Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold416
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1156864
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
File 6 of 8
Found at i:690364 original size:99 final size:100
Alignment explanation
Indices: 690246--690439 Score: 248
Period size: 99 Copynumber: 1.9 Consensus size: 100
690236 GGCACCCTTA
* * *
690246 TCATCTTTAAGCCCAATATCGCTAAGCCTTAAATCAGCATAGTGGCATC-TTCATATTCTTAAGC
1 TCATCTTTAAGCCCAATATCGCT-AGCCTTAAATCAGCATAGTGGCATCTTTAAGATTCCTAAGC
* *
690310 CTA-ATTCGCTGGCCTCGAATCAGCACATTGCAACC
65 CCAGAATCGCTGGCCTCGAATCAGCACATTGCAACC
* ** * * *
690345 TCATCTTTAAGTCTGATATCGCTTGCCTTGAATCAGCATATTGGCATCTTTAAGATTCCTAAGCC
1 TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTTAAGATTCCTAAGCC
* *
690410 CAGAATCGTTGGCCTTGAATCAGCACATTG
66 CAGAATCGCTGGCCTCGAATCAGCACATTG
690440 GCATTCTTTT
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
98 22 0.28
99 34 0.43
100 24 0.30
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (100 bp):
TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTTAAGATTCCTAAGCC
CAGAATCGCTGGCCTCGAATCAGCACATTGCAACC
Found at i:690567 original size:60 final size:61
Alignment explanation
Indices: 690493--690628 Score: 157
Period size: 60 Copynumber: 2.2 Consensus size: 61
690483 AGCATATTAA
* * * * * ** * *
690493 CATTCTTCGCATCTTTAAGCCCACTATCGCTGGTCTTGAATTAGCATGTTGGCA-CCTTAT
1 CATTCTTCTCATCTTAAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCATCCTTAT
* *
690553 CATTCTTCTCATCTTAAAGCCCAATATTACTGGCCCCGAATCAGCATATTGGCATCTTTAT
1 CATTCTTCTCATCTTAAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCATCCTTAT
*
690614 CACTCTTCTCATCTT
1 CATTCTTCTCATCTT
690629 CATCATCTTT
Statistics
Matches: 63, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 44 0.70
61 19 0.30
ACGTcount: A:0.22, C:0.29, G:0.12, T:0.37
Consensus pattern (61 bp):
CATTCTTCTCATCTTAAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCATCCTTAT
Found at i:693911 original size:20 final size:20
Alignment explanation
Indices: 693886--693938 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
693876 GCCAAAGAAG
693886 TGTATCGATACATTAATAAA
1 TGTATCGATACATTAATAAA
* * *
693906 TGTATCGATACATTTATCAT
1 TGTATCGATACATTAATAAA
693926 TGTATCGATACAT
1 TGTATCGATACAT
693939 CTAGATTTCC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.36, C:0.13, G:0.11, T:0.40
Consensus pattern (20 bp):
TGTATCGATACATTAATAAA
Found at i:707726 original size:10 final size:10
Alignment explanation
Indices: 707711--707773 Score: 76
Period size: 10 Copynumber: 6.5 Consensus size: 10
707701 CCGCAAAAAC
707711 AAAAAACACA
1 AAAAAACACA
*
707721 AAAAAAAAC-
1 AAAAAACACA
*
707730 AAAAAACATA
1 AAAAAACACA
*
707740 AAAAAATACA
1 AAAAAACACA
*
707750 AAAAAATACA
1 AAAAAACACA
707760 AAAAAACA-A
1 AAAAAACACA
707769 AAAAA
1 AAAAA
707774 CAAACAACAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
9 13 0.28
10 33 0.72
ACGTcount: A:0.84, C:0.11, G:0.00, T:0.05
Consensus pattern (10 bp):
AAAAAACACA
Found at i:707729 original size:19 final size:18
Alignment explanation
Indices: 707705--707777 Score: 94
Period size: 18 Copynumber: 3.9 Consensus size: 18
707695 CGTCCTCCGC
707705 AAAAACAAAAAACACAAAA
1 AAAAACAAAAAA-ACAAAA
707724 AAAAAC-AAAAAACATAAA
1 AAAAACAAAAAAACA-AAA
* *
707742 AAAATACAAAAAAATACAA
1 AAAA-ACAAAAAAACAAAA
707761 AAAAACAAAAAAACAAA
1 AAAAACAAAAAAACAAA
707778 CAACAAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
17 3 0.06
18 23 0.49
19 14 0.30
20 7 0.15
ACGTcount: A:0.84, C:0.12, G:0.00, T:0.04
Consensus pattern (18 bp):
AAAAACAAAAAAACAAAA
Found at i:709089 original size:53 final size:52
Alignment explanation
Indices: 709013--709115 Score: 138
Period size: 53 Copynumber: 2.0 Consensus size: 52
709003 ATCTTTCATT
* *
709013 CCAATGTTGCTGATCTTGGATCAGCACGTT-GTCACCTTTCTTCATCTTTAAGA
1 CCAATGTTGCTGATCTTGAATCAGCACGTTGGT-ACC-TTCATCATCTTTAAGA
*
709066 CCAATGTTGCT-AGCTTTGAATCAGCACGTTGGTACCTTCATCATCTTTAA
1 CCAATGTTGCTGATC-TTGAATCAGCACGTTGGTACCTTCATCATCTTTAA
709116 CTCCAAATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
52 15 0.33
53 28 0.62
54 2 0.04
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.37
Consensus pattern (52 bp):
CCAATGTTGCTGATCTTGAATCAGCACGTTGGTACCTTCATCATCTTTAAGA
Found at i:709308 original size:62 final size:62
Alignment explanation
Indices: 709210--709370 Score: 196
Period size: 62 Copynumber: 2.6 Consensus size: 62
709200 AGACACTCAT
* * ** * * *
709210 CACCCTTTTAAATCCACAACTCCATGGCACTTTTTTCTTTCCAAAAGCCCACGACTTCGCGA
1 CACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTCTTTCCAAAAACCCACGACTCCACGA
* * * *
709272 CACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTCTTTCCAAAAATCTACGACTCCATGG
1 CACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTCTTTCCAAAAACCCACGACTCCACGA
* * *
709334 TATCCTTTTAAGTCCACGACTCCGTGGCACCCTTTTC
1 CACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTC
709371 AAAGCCTACA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.23, C:0.35, G:0.11, T:0.30
Consensus pattern (62 bp):
CACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTCTTTCCAAAAACCCACGACTCCACGA
Found at i:709399 original size:32 final size:32
Alignment explanation
Indices: 709357--709425 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 32
709347 CCACGACTCC
* *
709357 GTGGC-ACCCTTTTC-AAAGCCTACACAAGTCG
1 GTGGCAACCC-TTTCAAAAGCCCACACAAATCG
709388 GTGGCAACCCTTTCAAAAGCCCACACAAATCG
1 GTGGCAACCCTTTCAAAAGCCCACACAAATCG
709420 GTGGCA
1 GTGGCA
709426 TCTACTTCTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 9 0.26
32 25 0.74
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.19
Consensus pattern (32 bp):
GTGGCAACCCTTTCAAAAGCCCACACAAATCG
Found at i:709541 original size:52 final size:52
Alignment explanation
Indices: 709485--709676 Score: 171
Period size: 52 Copynumber: 3.8 Consensus size: 52
709475 CTTATCATCT
* * * *
709485 TTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTCAATATTC
1 TTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAATATTC
* * * * *
709537 TTAAGCCTAAT-TCGCTGGCCTCGAATCAGCACATT-GCAACCTC-AT-CT-
1 TTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAATATTC
* ** * * * *
709584 TTAAGTCTGATATCGCTTGCCTTGAATCAGCATATTGGCATCTTTAAGATTC
1 TTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAATATTC
* *
709636 CTAAGCCCAGA-ATCGTTGGCCTTGAATCAGCACATTGGCAT
1 TTAAGCCCA-ATATCGCTGGCCTTGAATCAGCACATTGGCAT
709677 TCTTTTCATC
Statistics
Matches: 108, Mismatches: 26, Indels: 12
0.74 0.18 0.08
Matches are distributed among these distances:
47 9 0.08
48 22 0.20
49 7 0.06
50 7 0.06
51 20 0.19
52 42 0.39
53 1 0.01
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (52 bp):
TTAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAATATTC
Found at i:709597 original size:99 final size:100
Alignment explanation
Indices: 709479--709672 Score: 264
Period size: 99 Copynumber: 1.9 Consensus size: 100
709469 GGCACCCTTA
* *
709479 TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTCAATATTCTTAAGCC
1 TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTCAAGATTCCTAAGCC
* *
709544 TA-ATTCGCTGGCCTCGAATCAGCACATTGCAACC
66 CAGAATCGCTGGCCTCGAATCAGCACATTGCAACC
* ** * * * *
709578 TCATCTTTAAGTCTGATATCGCTTGCCTTGAATCAGCATATTGGCATCTTTAAGATTCCTAAGCC
1 TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTCAAGATTCCTAAGCC
* *
709643 CAGAATCGTTGGCCTTGAATCAGCACATTG
66 CAGAATCGCTGGCCTCGAATCAGCACATTG
709673 GCATTCTTTT
Statistics
Matches: 81, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
99 57 0.70
100 24 0.30
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (100 bp):
TCATCTTTAAGCCCAATATCGCTAGCCTTAAATCAGCATAGTGGCATCTTCAAGATTCCTAAGCC
CAGAATCGCTGGCCTCGAATCAGCACATTGCAACC
Found at i:709833 original size:61 final size:61
Alignment explanation
Indices: 709726--709862 Score: 175
Period size: 61 Copynumber: 2.2 Consensus size: 61
709716 AGCATATTAA
* * * * ** * *
709726 CATTCTTCGCATCTTTAAGCCCACTATCGCTGGTCTTGAATTAGCATGTTGGCACCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCACCTTTAT
* *
709787 CATTCTTCTCATCTTTAAGCCCAATATTACTGGCCCCGAATCAGCATATTGGCATCTTTAT
1 CATTCTTCTCATCTTTAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCACCTTTAT
*
709848 CACTCTTCTCATCTT
1 CATTCTTCTCATCTT
709863 CATCATCTTT
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.38
Consensus pattern (61 bp):
CATTCTTCTCATCTTTAAGCCCAATATCACTGGCCCCGAATCAGCATATTGGCACCTTTAT
Found at i:710572 original size:47 final size:48
Alignment explanation
Indices: 710518--710632 Score: 135
Period size: 50 Copynumber: 2.4 Consensus size: 48
710508 ACTGCCAAGA
710518 AAATGTATCGATACATTCATTGTATCAATACATCTAGAT-TTCTTA-CC
1 AAATGTATCGATACATTCATTGTATCAATACATCTAGATATT-TTACCC
** * *
710565 AAATGTATCGATACATTGATCATTGTATCGTTACATCTGGGTATTTTACCC
1 AAATGTATCGATACA-T--TCATTGTATCAATACATCTAGATATTTTACCC
*
710616 AGATGTATCGATACATT
1 AAATGTATCGATACATT
710633 ATTCAATGTA
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
47 15 0.26
48 2 0.03
50 23 0.40
51 18 0.31
ACGTcount: A:0.31, C:0.17, G:0.13, T:0.38
Consensus pattern (48 bp):
AAATGTATCGATACATTCATTGTATCAATACATCTAGATATTTTACCC
Found at i:722911 original size:2 final size:2
Alignment explanation
Indices: 722904--722946 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
722894 TAGTTTTAAC
722904 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
722946 A
1 A
722947 GGTAGGGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:723751 original size:23 final size:23
Alignment explanation
Indices: 723725--723790 Score: 58
Period size: 23 Copynumber: 3.2 Consensus size: 23
723715 GTCTTCCTTG
723725 TAGCAATGCTTCAGTATTTCTGA
1 TAGCAATGCTTCAGTATTTCTGA
* *
723748 TAGCAGT-CTTC-----CT-TG-
1 TAGCAATGCTTCAGTATTTCTGA
723763 TAGCAATGCTTCAGTATTTCTGA
1 TAGCAATGCTTCAGTATTTCTGA
723786 TAGCA
1 TAGCA
723791 GTCTTCCTTG
Statistics
Matches: 31, Mismatches: 4, Indels: 16
0.61 0.08 0.31
Matches are distributed among these distances:
15 6 0.19
16 6 0.19
17 1 0.03
21 1 0.03
22 6 0.19
23 11 0.35
ACGTcount: A:0.24, C:0.20, G:0.18, T:0.38
Consensus pattern (23 bp):
TAGCAATGCTTCAGTATTTCTGA
Found at i:723754 original size:38 final size:38
Alignment explanation
Indices: 723703--723816 Score: 228
Period size: 38 Copynumber: 3.0 Consensus size: 38
723693 AGAAGTAGTG
723703 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
1 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
723741 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
1 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
723779 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
1 TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
723817 GTCTTAGTCG
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 76 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.39
Consensus pattern (38 bp):
TTTCTGATAGCAGTCTTCCTTGTAGCAATGCTTCAGTA
Found at i:729008 original size:3 final size:3
Alignment explanation
Indices: 728993--729024 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
728983 CATTATGTCT
*
728993 ATA ATA ATG ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
729025 TTACGTTGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:729751 original size:18 final size:18
Alignment explanation
Indices: 729713--729747 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
729703 TAAGTAATAA
729713 AAATAAAATTTTATATTT
1 AAATAAAATTTTATATTT
*
729731 AAATTAAA-TTTATATTT
1 AAATAAAATTTTATATTT
729748 TAAAAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAATAAAATTTTATATTT
Found at i:729801 original size:22 final size:23
Alignment explanation
Indices: 729775--729829 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
729765 ATAAATTTGT
729775 TTAAATTATTTT-T-ATAAAAAAA
1 TTAAATT-TTTTATAATAAAAAAA
729797 TTAAATTTTTTATAATAAAAAAA
1 TTAAATTTTTTATAATAAAAAAA
729820 TT-AATTTTTT
1 TTAAATTTTTT
729830 GTATATTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
21 4 0.13
22 16 0.52
23 11 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (23 bp):
TTAAATTTTTTATAATAAAAAAA
Found at i:731255 original size:19 final size:18
Alignment explanation
Indices: 731222--731258 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
731212 ATAAAAATTC
731222 ATAATAATAAATAATTTA
1 ATAATAATAAATAATTTA
*
731240 ATAATAAATTAATAATTTA
1 ATAAT-AATAAATAATTTA
731259 TTAAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATAATAATAAATAATTTA
Found at i:731557 original size:9 final size:9
Alignment explanation
Indices: 731539--731580 Score: 52
Period size: 8 Copynumber: 4.8 Consensus size: 9
731529 TTTTTAACCC
731539 TTTTT-ATT
1 TTTTTAATT
*
731547 TTGTT-ATT
1 TTTTTAATT
731555 TTTTTAATTT
1 TTTTTAA-TT
731565 TTTTTAATT
1 TTTTTAATT
731574 TTTTTAA
1 TTTTTAA
731581 AGAAATTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
8 11 0.37
9 10 0.33
10 9 0.30
ACGTcount: A:0.19, C:0.00, G:0.02, T:0.79
Consensus pattern (9 bp):
TTTTTAATT
Found at i:731727 original size:8 final size:8
Alignment explanation
Indices: 731714--731744 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
731704 TGCATATATT
731714 TTTTAAAA
1 TTTTAAAA
731722 TTTTAAAA
1 TTTTAAAA
731730 TTTTAAAA
1 TTTTAAAA
731738 TTTTAAA
1 TTTTAAA
731745 TGAATAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:731763 original size:26 final size:26
Alignment explanation
Indices: 731734--731792 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
731724 TTAAAATTTT
731734 AAAATT-T-TAAATGAATAAAATAATTA
1 AAAATTATATAAA-GAATAAAA-AATTA
* *
731760 AAAATTATATAAAGGATTAAAAATTA
1 AAAATTATATAAAGAATAAAAAATTA
731786 AAAATTA
1 AAAATTA
731793 ATTGTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 18 0.62
27 7 0.24
28 4 0.14
ACGTcount: A:0.63, C:0.00, G:0.05, T:0.32
Consensus pattern (26 bp):
AAAATTATATAAAGAATAAAAAATTA
Found at i:733369 original size:20 final size:21
Alignment explanation
Indices: 733316--733374 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
733306 TACATTAGTA
*
733316 AATGTATCGATACATGCTTAG
1 AATGTATCGATACATGCTTAC
*
733337 AATTGTATCGATACATTCTT-C
1 AA-TGTATCGATACATGCTTAC
*
733358 AATGTATTGATACATGC
1 AATGTATCGATACATGC
733375 AGGCAAATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
20 13 0.39
21 4 0.12
22 16 0.48
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATGCTTAC
Found at i:736230 original size:13 final size:13
Alignment explanation
Indices: 736212--736236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
736202 ATAATGCACA
736212 GTATCGATACATT
1 GTATCGATACATT
736225 GTATCGATACAT
1 GTATCGATACAT
736237 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:736270 original size:21 final size:21
Alignment explanation
Indices: 736222--736276 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
736212 GTATCGATAC
*
736222 ATTGTATCGATACATGACCAA
1 ATTGTATCGATACATGACAAA
*
736243 A-TGTATCGATACTTG-CAAA
1 ATTGTATCGATACATGACAAA
*
736262 GATTGTATCGTTACA
1 -ATTGTATCGATACA
736277 AGTGATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 3 0.11
20 14 0.50
21 11 0.39
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (21 bp):
ATTGTATCGATACATGACAAA
Found at i:736332 original size:20 final size:20
Alignment explanation
Indices: 736307--736359 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
736297 CTTAACTGTT
736307 TGTATCGATACA-GACAAAGA
1 TGTATCGATACATGACAAA-A
*
736327 TGTATCGATACATGACCAAA
1 TGTATCGATACATGACAAAA
736347 TGTATCGATACAT
1 TGTATCGATACAT
736360 TGGCTTGTAA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 26 0.84
21 5 0.16
ACGTcount: A:0.40, C:0.17, G:0.17, T:0.26
Consensus pattern (20 bp):
TGTATCGATACATGACAAAA
Found at i:741896 original size:33 final size:33
Alignment explanation
Indices: 741841--741903 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
741831 TTAGAAGCAA
* * *
741841 TGTATTGATACAATTCATCATGTATTGATACAT
1 TGTATCGATACAATTCACCATGTATCGATACAT
741874 TGTATCGATACAATGT-ACCATGTATCGATA
1 TGTATCGATACAAT-TCACCATGTATCGATA
741904 TAAATAGTGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.14, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACAATTCACCATGTATCGATACAT
Found at i:741979 original size:19 final size:19
Alignment explanation
Indices: 741939--741990 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
741929 CAGTTTCATA
**
741939 TATCGATACAATTGTCCATG
1 TATCGATACAA-TGAACATG
741959 TATCGATACAATGAACATG
1 TATCGATACAATGAACATG
* *
741978 TACCAATACAATG
1 TATCGATACAATG
741991 TATCGATACA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (19 bp):
TATCGATACAATGAACATG
Found at i:744533 original size:24 final size:24
Alignment explanation
Indices: 744506--744553 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
744496 GTTTCTGAGC
744506 TCGGCTCAAGTTGATGGTTTTAGA
1 TCGGCTCAAGTTGATGGTTTTAGA
744530 TCGGCTCAAGTTGATGGTTTTAGA
1 TCGGCTCAAGTTGATGGTTTTAGA
744554 AAGGTTTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.12, G:0.29, T:0.38
Consensus pattern (24 bp):
TCGGCTCAAGTTGATGGTTTTAGA
Found at i:747208 original size:97 final size:96
Alignment explanation
Indices: 747081--747326 Score: 341
Period size: 97 Copynumber: 2.5 Consensus size: 96
747071 TTTTTTGTTG
* * *
747081 AAAAACGGGGTTAGAGTATCCCTTGGAGGAATGGGGTAGGAGTGTCCCCGACAATGATAATTTTG
1 AAAAACGGGGTTGGAGTATCCC-TCGAGGAATGGGGTAGGAGTGTCCCCGACAATGATAATTTAG
*
747146 GTAGAAATAAGATTCAAATCTTGATAAGTTTT
65 GTAGAAATAAGATTCAAATATTGATAAGTTTT
* * *
747178 AAAAACGGGGTTGGAGTATCCCTCAGAGGAATAAGGTTA-AAGTGTCCCCGACAATGATAATTTA
1 AAAAACGGGGTTGGAGTATCCCTC-GAGGAAT-GGGGTAGGAGTGTCCCCGACAATGATAATTTA
747242 GGTAGAAATAAGATTCAAATATTGATAAGTTTT
64 GGTAGAAATAAGATTCAAATATTGATAAGTTTT
* * * *
747275 AAAAATGGGGTTGGAGTATCCCTTCGAAGGGATGGGGTTGGAGTATCCCCGA
1 AAAAACGGGGTTGGAGTATCCC-TCG-AGGAATGGGGTAGGAGTGTCCCCGA
747327 TGAATAAAAT
Statistics
Matches: 130, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
96 1 0.01
97 108 0.83
98 21 0.16
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (96 bp):
AAAAACGGGGTTGGAGTATCCCTCGAGGAATGGGGTAGGAGTGTCCCCGACAATGATAATTTAGG
TAGAAATAAGATTCAAATATTGATAAGTTTT
Found at i:754644 original size:52 final size:52
Alignment explanation
Indices: 754496--754624 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
754486 CGCAATATGA
754496 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
754548 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
754600 AAATTTACCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
754625 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:754651 original size:13 final size:13
Alignment explanation
Indices: 754633--754657 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
754623 CAAAGATCAG
754633 TGTATCGATACAA
1 TGTATCGATACAA
754646 TGTATCGATACA
1 TGTATCGATACA
754658 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:754724 original size:19 final size:19
Alignment explanation
Indices: 754700--754845 Score: 112
Period size: 19 Copynumber: 8.5 Consensus size: 19
754690 TAGCTTACAT
*
754700 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
754719 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
* *
754732 TGTATCAATACAGCACTTA
1 TGTATCGATACAACACTTA
754751 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
754771 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
754784 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
754803 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
754816 TGTATCGATACAACACTTTT
1 TGTATCGATACAACAC-TTA
754836 TGTATCGATA
1 TGTATCGATA
754846 TAAATCGTTG
Statistics
Matches: 102, Mismatches: 5, Indels: 39
0.70 0.03 0.27
Matches are distributed among these distances:
13 26 0.25
14 3 0.03
16 13 0.13
17 3 0.03
18 2 0.02
19 33 0.32
20 22 0.22
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.36
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:754736 original size:32 final size:32
Alignment explanation
Indices: 754695--754762 Score: 109
Period size: 32 Copynumber: 2.1 Consensus size: 32
754685 GGCAGTAGCT
*
754695 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCAATACAAAACTTATGTATCGA
**
754727 TACATTGTATCAATACAGCACTTATGTATCGA
1 TACATTGTATCAATACAAAACTTATGTATCGA
754759 TACA
1 TACA
754763 ACACTTTATG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
TACATTGTATCAATACAAAACTTATGTATCGA
Found at i:754772 original size:52 final size:51
Alignment explanation
Indices: 754700--754814 Score: 194
Period size: 52 Copynumber: 2.2 Consensus size: 51
754690 TAGCTTACAT
*
754700 TGTATCGATACAAAACTTATGTATCGATACATTGTATCAATACAGCACTTA
1 TGTATCGATACAAAACTTATGTATCGATACATTGTATCAATACAACACTTA
* *
754751 TGTATCGATACAACACTTTATGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACAAAAC-TTATGTATCGATACATTGTATCAATACAACACTTA
754803 TGTATCGATACA
1 TGTATCGATACA
754815 TTGTATCGAT
Statistics
Matches: 60, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
51 15 0.25
52 45 0.75
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (51 bp):
TGTATCGATACAAAACTTATGTATCGATACATTGTATCAATACAACACTTA
Found at i:754789 original size:13 final size:13
Alignment explanation
Indices: 754771--754827 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
754761 CAACACTTTA
754771 TGTATCGATACAT
1 TGTATCGATACAT
754784 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
754802 ATGTATCGATACAT
1 -TGTATCGATACAT
754816 TGTATCGATACA
1 TGTATCGATACA
754828 ACACTTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:754809 original size:32 final size:33
Alignment explanation
Indices: 754751--754845 Score: 174
Period size: 32 Copynumber: 2.9 Consensus size: 33
754741 ACAGCACTTA
754751 TGTATCGATACAACACTTTATGTATCGATACAT
1 TGTATCGATACAACACTTTATGTATCGATACAT
754784 TGTATCGATACAACAC-TTATGTATCGATACAT
1 TGTATCGATACAACACTTTATGTATCGATACAT
*
754816 TGTATCGATACAACACTTTTTGTATCGATA
1 TGTATCGATACAACACTTTATGTATCGATA
754846 TAAATCGTTG
Statistics
Matches: 60, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 32 0.53
33 28 0.47
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.37
Consensus pattern (33 bp):
TGTATCGATACAACACTTTATGTATCGATACAT
Found at i:755719 original size:98 final size:95
Alignment explanation
Indices: 755541--755815 Score: 358
Period size: 98 Copynumber: 2.9 Consensus size: 95
755531 TTGAAGATGC
* * * *
755541 GAAGAATGACAATGTGCTGCTTCATGGCCAGCGACATTGATCTTAAAGATGACGGTGCCAATATG
1 GAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATG
**
755606 CTGATTCAAAACCAGCGATACCAGACTTAAAGA
65 CTGATTCAAGGCCAGCGATACCAGACTT-AA-A
**
755639 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGGTATTGGTCTTAAAGATGACGGTGCCAATATG
1 -GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATG
*** *
755704 CTGATTCAAGGCCAGCGATATTGGGCTTAAA
65 CTGATTCAAGGCCAGCGATACCAGACTTAAA
* * *
755735 G--G-TGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACGGTGCCAATATGT
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGC
755797 TGATTCAAGGCCAGCGATA
66 TGATTCAAGGCCAGCGATA
755816 TTGGATTTAG
Statistics
Matches: 159, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
92 74 0.47
93 1 0.01
95 1 0.01
96 1 0.01
97 2 0.01
98 76 0.48
99 4 0.03
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (95 bp):
GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGC
TGATTCAAGGCCAGCGATACCAGACTTAAA
Found at i:755794 original size:92 final size:97
Alignment explanation
Indices: 755550--755837 Score: 367
Period size: 92 Copynumber: 3.0 Consensus size: 97
755540 CGAAGAATGA
* *
755550 CAATGTGCTGCTTCATGGCCAGCGACATT-GATCTTAAAGATGACGGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGA-CTTAAAGATGACGGTGCCAATATGCTGATTCA
** ***
755614 AAACCAGCGATACCAGACTTAAAGATGAAGATGC
65 AGGCCAGCGATATTGGACTTAAAGATG-AGATGC
** *
755648 CAATGTGCTGATTCAAGGCCAGCGGTATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
*
755713 GGCCAGCGATATTGGGCTT-AA-A-G-G-TGC
66 GGCCAGCGATATTGGACTTAAAGATGAGATGC
* *
755740 CAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACGGTGCCAATATGTTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
*
755805 GGCCAGCGATATTGGATTTAGAAGA--AGATGC
66 GGCCAGCGATATTGGACTTA-AAGATGAGATGC
755836 CA
1 CA
755838 CCAACTTGTG
Statistics
Matches: 166, Mismatches: 18, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
92 80 0.48
93 1 0.01
94 2 0.01
95 3 0.02
96 6 0.04
97 2 0.01
98 71 0.43
99 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (97 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAGATGAGATGC
Found at i:755819 original size:49 final size:49
Alignment explanation
Indices: 755550--755829 Score: 313
Period size: 49 Copynumber: 5.8 Consensus size: 49
755540 CGAAGAATGA
* * * *
755550 CAATGTGCTGCTTCATGGCCAGCGACATT-GATCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGA-CTTAAAGATGACGGTGC
** *** * *
755599 CAATATGCTGATTCAAAACCAGCGATACCAGACTTAAAGATGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGGTGC
* * *
755648 CAATGTGCTGATTCAAGGCCAGCGGTATTGGTCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGGTGC
*
755697 CAATATGCTGATTCAAGGCCAGCGATATTGGGCTT--A-A--A-GGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGGTGC
* * *
755740 CAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGGTGC
* *
755789 CAATATGTTGATTCAAGGCCAGCGATATTGGATTTAGAAGA
1 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGA
755830 AGATGCCACC
Statistics
Matches: 191, Mismatches: 32, Indels: 15
0.80 0.13 0.06
Matches are distributed among these distances:
43 36 0.19
44 1 0.01
45 1 0.01
46 2 0.01
47 1 0.01
48 1 0.01
49 143 0.75
50 6 0.03
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACGGTGC
Found at i:755867 original size:30 final size:28
Alignment explanation
Indices: 755846--756152 Score: 244
Period size: 28 Copynumber: 10.6 Consensus size: 28
755836 CACCAACTTG
*
755846 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTAACT
* * * *
755874 TATGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTAACT
755904 TGTGGGCTTTTGAAGGTTGCCACTAACT
1 TGTGGGCTTTTGAAGGTTGCCACTAACT
* * ***
755932 TGTGGGCTTTGGGAGAAGGGTGCCACTGGTT
1 TGTGGGCTTT---TGAAGGTTGCCACTAACT
* *
755963 TGTGCGC-TTTGAAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTTG---AAG-GTTGCCACTAACT
*
755993 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTAACT
* * * *
756021 TGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT-TG--AAGGTTGCCACTAACT
*
756052 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTAACT
* * * *
756079 TGTGGGCTTTGGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTT---TGAAGGTTGCCACTAACT
*
756110 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTAACT
756137 TGTGGGCTTTTGAAGG
1 TGTGGGCTTTTGAAGG
756153 GTGAGGAATA
Statistics
Matches: 231, Mismatches: 29, Indels: 38
0.78 0.10 0.13
Matches are distributed among these distances:
27 45 0.19
28 68 0.29
29 2 0.01
30 49 0.21
31 67 0.29
ACGTcount: A:0.17, C:0.16, G:0.35, T:0.32
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTAACT
Found at i:755925 original size:58 final size:55
Alignment explanation
Indices: 755846--756155 Score: 334
Period size: 58 Copynumber: 5.3 Consensus size: 55
755836 CACCAACTTG
* * *
755846 TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTT-G--AAGGTTGCCACTGACT
* * * **
755904 TGTGGGCTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGGAGAAGGGTGCCACTGGTT
1 TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTT----GAAGGTTGCCACTGACT
* *
755963 TGTGCGC-TTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTG---AAGGGTGCCACTGACTTGTGGGC-TTTGAAGGTTGCCACTGACT
* *
756021 TGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTT-TG--AAGGGTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACT
* *
756079 TGTGGGCTTTGGGAGAAGGGTGCCACTGATTTGTGGGCTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTT---TGAAGGGTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACT
756137 TGTGGGCTTTTGAAGGGTG
1 TGTGGGCTTTTGAAGGGTG
756156 AGGAATATCT
Statistics
Matches: 223, Mismatches: 18, Indels: 25
0.84 0.07 0.09
Matches are distributed among these distances:
55 8 0.04
58 143 0.64
59 45 0.20
60 3 0.01
61 21 0.09
62 3 0.01
ACGTcount: A:0.17, C:0.16, G:0.35, T:0.32
Consensus pattern (55 bp):
TGTGGGCTTTTGAAGGGTGCCACTGACTTGTGGGCTTTGAAGGTTGCCACTGACT
Found at i:755985 original size:89 final size:87
Alignment explanation
Indices: 755858--756120 Score: 341
Period size: 89 Copynumber: 3.0 Consensus size: 87
755848 TGGGCTTTTG
* * * *
755858 AAGGTTGCCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGGTTG
1 AAGGGTGCCACTGATTTGTGCGCTTT-GAAAA-GGTGCCACTGACTTGTGGGCTTTTGAAGGTTG
* *
755923 CCACTAACTTGTGGGCTTTGGGAG
64 CCACTGACTTGTGGGCTTTGGGAA
*
755947 AAGGGTGCCACTGGTTTGTGCGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTTG
1 AAGGGTGCCACTGATTTGTGCGCTTTG-AAAAG-GTGCCACTGACTTGTGGGCTTTTGAAGGTTG
756012 CCACTGACTTGTGGGCTTTGGGAA
64 CCACTGACTTGTGGGCTTTGGGAA
* * *
756036 AAGGGTGCCACTGATTTGTGGGCTTTG--AAGGTTGCCACTGACTTGTGGGCTTTGGGAGAAGGG
1 AAGGGTGCCACTGATTTGTGCGCTTTGAAAAGG-TGCCACTGACTTGTGGGCTTT---TGAAGGT
*
756099 TGCCACTGATTTGTGGGCTTTG
62 TGCCACTGACTTGTGGGCTTTG
756121 AAGGTTGCCA
Statistics
Matches: 156, Mismatches: 12, Indels: 12
0.87 0.07 0.07
Matches are distributed among these distances:
85 1 0.01
86 24 0.15
88 2 0.01
89 129 0.83
ACGTcount: A:0.18, C:0.16, G:0.35, T:0.31
Consensus pattern (87 bp):
AAGGGTGCCACTGATTTGTGCGCTTTGAAAAGGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCC
ACTGACTTGTGGGCTTTGGGAA
Found at i:756113 original size:147 final size:144
Alignment explanation
Indices: 755846--756152 Score: 510
Period size: 147 Copynumber: 2.1 Consensus size: 144
755836 CACCAACTTG
755846 TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGC
1 TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGC
*
755911 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGGAGAAGGGTGCCACTGGTTTGTGCGCTTTGAA
66 TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATTTGTGCGCTTTG--
755976 AAAGAG-TGCCACTGACT
129 -AAG-GTTGCCACTGACT
* *
755993 TGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGG
1 TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTT-GGAAAAGGGTGCCACTGACTTGTGGG
* *
756058 C-TTTGAAGGTTGCCACTGACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATTTGTGGGCTTTGA
65 CTTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATTTGTGCGCTTTGA
756122 AGGTTGCCACTGACT
130 AGGTTGCCACTGACT
756137 TGTGGGCTTTTGAAGG
1 TGTGGGCTTTTGAAGG
756153 GTGAGGAATA
Statistics
Matches: 153, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
143 1 0.01
144 30 0.20
147 96 0.63
148 26 0.17
ACGTcount: A:0.17, C:0.16, G:0.35, T:0.32
Consensus pattern (144 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTTGGAAAAGGGTGCCACTGACTTGTGGGC
TTTTGAAGGTTGCCACTAACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATTTGTGCGCTTTGAA
GGTTGCCACTGACT
Found at i:757606 original size:6 final size:6
Alignment explanation
Indices: 757589--757700 Score: 65
Period size: 6 Copynumber: 18.7 Consensus size: 6
757579 ACCCTTTTTG
* * * *
757589 TTGTTG TTGTTT TTGTTT TTCTTT CT-TTG TT-TTT TTGTTT TTGTTTT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TTG-TTT
* * *
757636 TTGTTT TT-TGTT TT-TTT TTGTTT TTTTCTT CTTCTTT TT-TTT TGGTTAT
1 TTGTTT TTGT-TT TTGTTT TTGTTT TTGT-TT -TTGTTT TTGTTT TTGTT-T
757685 TTGGTTT TT-TTT TTGT
1 TT-GTTT TTGTTT TTGT
757701 GGAGGACGCC
Statistics
Matches: 86, Mismatches: 10, Indels: 20
0.74 0.09 0.17
Matches are distributed among these distances:
5 21 0.24
6 44 0.51
7 15 0.17
8 6 0.07
ACGTcount: A:0.01, C:0.04, G:0.13, T:0.81
Consensus pattern (6 bp):
TTGTTT
Found at i:757617 original size:14 final size:13
Alignment explanation
Indices: 757600--757678 Score: 65
Period size: 14 Copynumber: 5.9 Consensus size: 13
757590 TGTTGTTGTT
757600 TTTGTTTTTCTTTC
1 TTTGTTTTT-TTTC
*
757614 TTTGTTTTTTTGTT
1 TTTGTTTTTTT-TC
*
757628 TTTGTTTTTTGTTT
1 TTTGTTTTTT-TTC
757642 TTTGTTTTTTTT-
1 TTTGTTTTTTTTC
*
757654 TGTT-TTTTTCTTC
1 T-TTGTTTTTTTTC
757667 TTCT-TTTTTTTT
1 TT-TGTTTTTTTT
757679 GGTTATTTGG
Statistics
Matches: 57, Mismatches: 3, Indels: 11
0.80 0.04 0.15
Matches are distributed among these distances:
12 9 0.16
13 15 0.26
14 32 0.56
15 1 0.02
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (13 bp):
TTTGTTTTTTTTC
Found at i:757698 original size:1 final size:1
Alignment explanation
Indices: 757598--757678 Score: 54
Period size: 1 Copynumber: 81.0 Consensus size: 1
757588 GTTGTTGTTG
* * * * * * * * *
757598 TTTTTGTTTTTCTTTCTTTGTTTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
757663 CTTCTTCTTTTTTTTT
1 TTTTTTTTTTTTTTTT
757679 GGTTATTTGG
Statistics
Matches: 56, Mismatches: 24, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 56 1.00
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:769866 original size:33 final size:33
Alignment explanation
Indices: 769829--769895 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
769819 TTCAACGATT
769829 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
769862 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
769895 T
1 T
769896 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:769867 original size:13 final size:13
Alignment explanation
Indices: 769849--769873 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
769839 CATAAAATGT
769849 TGTATCGATACAA
1 TGTATCGATACAA
769862 TGTATCGATACA
1 TGTATCGATACA
769874 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:769956 original size:13 final size:13
Alignment explanation
Indices: 769938--769962 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
769928 ATTACTCACA
769938 TGTATCGATACAT
1 TGTATCGATACAT
769951 TGTATCGATACA
1 TGTATCGATACA
769963 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:770027 original size:52 final size:52
Alignment explanation
Indices: 769971--770101 Score: 210
Period size: 52 Copynumber: 2.5 Consensus size: 52
769961 CACTGATCTT
*
769971 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACA-TTTTATAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTA-AA
*
770023 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
* *
770075 TGTATCGATACATGCAAGCAACTTTTC
1 TGTATCGATACATGCAGGCAAATTTTC
770102 ATATTTCGGG
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
52 69 0.95
53 4 0.05
ACGTcount: A:0.33, C:0.19, G:0.16, T:0.32
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTTCCCAGATGTATCGATACACTATTAAA
Found at i:776109 original size:13 final size:13
Alignment explanation
Indices: 776091--776117 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
776081 ACAATATTCC
776091 TTGTATCGATACA
1 TTGTATCGATACA
776104 TTGTATCGATACA
1 TTGTATCGATACA
776117 T
1 T
776118 GCAGTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:777829 original size:72 final size:72
Alignment explanation
Indices: 777712--777857 Score: 292
Period size: 72 Copynumber: 2.0 Consensus size: 72
777702 TCCAAACTTG
777712 AGCATCAATCCCCCCATACTCCGACTAACTCTAGTGACGACGAGTCTTAGATTTAGTCTCCGTAT
1 AGCATCAATCCCCCCATACTCCGACTAACTCTAGTGACGACGAGTCTTAGATTTAGTCTCCGTAT
777777 TAGGATT
66 TAGGATT
777784 AGCATCAATCCCCCCATACTCCGACTAACTCTAGTGACGACGAGTCTTAGATTTAGTCTCCGTAT
1 AGCATCAATCCCCCCATACTCCGACTAACTCTAGTGACGACGAGTCTTAGATTTAGTCTCCGTAT
777849 TAGGATT
66 TAGGATT
777856 AG
1 AG
777858 TTGCACCTGT
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
72 74 1.00
ACGTcount: A:0.27, C:0.27, G:0.17, T:0.29
Consensus pattern (72 bp):
AGCATCAATCCCCCCATACTCCGACTAACTCTAGTGACGACGAGTCTTAGATTTAGTCTCCGTAT
TAGGATT
Found at i:778699 original size:20 final size:19
Alignment explanation
Indices: 778676--778747 Score: 74
Period size: 20 Copynumber: 3.7 Consensus size: 19
778666 CACACCCATA
*
778676 TGTATCGATACATTATGCTT
1 TGTATCGATACATT-TGCAT
*
778696 TGTATCGATACATTTTCAT
1 TGTATCGATACATTTGCAT
* *
778715 TGTATCGATATA-TGGACAAT
1 TGTATCGATACATTTG-C-AT
778735 TGTATCGATACAT
1 TGTATCGATACAT
778748 GAAATTGGCA
Statistics
Matches: 43, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
18 1 0.02
19 15 0.35
20 27 0.63
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTGCAT
Found at i:778805 original size:20 final size:20
Alignment explanation
Indices: 778780--778825 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
778770 CCACTATTCG
*
778780 ATACATGGTACATTGTATCA
1 ATACATGATACATTGTATCA
** *
778800 ATACATGATGGATTGTATCG
1 ATACATGATACATTGTATCA
778820 ATACAT
1 ATACAT
778826 TGCTTTTAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (20 bp):
ATACATGATACATTGTATCA
Found at i:779909 original size:20 final size:20
Alignment explanation
Indices: 779880--779936 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 20
779870 ATAATCCAAA
779880 GTATCGATACATAGGTATTT
1 GTATCGATACATAGGTATTT
*
779900 GTATCAATACATAAATAGGTATTT
1 GTATCGATAC----ATAGGTATTT
779924 GTATCGATACATA
1 GTATCGATACATA
779937 AAGGTTGACT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
20 12 0.39
24 19 0.61
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (20 bp):
GTATCGATACATAGGTATTT
Found at i:779922 original size:24 final size:24
Alignment explanation
Indices: 779890--779938 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
779880 GTATCGATAC
779890 ATAGGTATTTGTATCAATACATAA
1 ATAGGTATTTGTATCAATACATAA
*
779914 ATAGGTATTTGTATCGATACATAA
1 ATAGGTATTTGTATCAATACATAA
779938 A
1 A
779939 GGTTGACTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.41, C:0.08, G:0.14, T:0.37
Consensus pattern (24 bp):
ATAGGTATTTGTATCAATACATAA
Found at i:780427 original size:34 final size:35
Alignment explanation
Indices: 780388--780461 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 35
780378 ATTTTCTACA
*
780388 TTTCAAAGAGCTTTTGTATT-CTTTGTTG-TTATTC
1 TTTCAAAGAGCATTTGTATTCCTTTG-TGCTTATTC
**
780422 TTTCAAAGCTCATTTGTATTCCTTTGTGCTTATTC
1 TTTCAAAGAGCATTTGTATTCCTTTGTGCTTATTC
780457 TTTCA
1 TTTCA
780462 CAAACACTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
34 19 0.54
35 16 0.46
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.54
Consensus pattern (35 bp):
TTTCAAAGAGCATTTGTATTCCTTTGTGCTTATTC
Found at i:781373 original size:19 final size:19
Alignment explanation
Indices: 781331--781374 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
781321 AATTACAAAA
781331 ATTAAA-ATTTTATAAAGT
1 ATTAAATATTTTATAAAGT
*
781349 AATAAATATTTATATAAA-T
1 ATTAAATATTT-TATAAAGT
781368 ATTAAAT
1 ATTAAAT
781375 TATATAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 5 0.23
19 11 0.50
20 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTAAATATTTTATAAAGT
Found at i:783446 original size:2 final size:2
Alignment explanation
Indices: 783439--783471 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
783429 TAATTTTAAC
783439 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
783472 TTGAGCTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:784503 original size:17 final size:17
Alignment explanation
Indices: 784477--784514 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
784467 GTCTCTCTGA
*
784477 TAATCTTATTCAACAAG
1 TAATCATATTCAACAAG
784494 TAATCATATTCAACAAG
1 TAATCATATTCAACAAG
784511 TAAT
1 TAAT
784515 TTATAAGTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (17 bp):
TAATCATATTCAACAAG
Found at i:784838 original size:13 final size:13
Alignment explanation
Indices: 784803--784837 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
784793 TTTTTTATAT
784803 TTTTCTTCTTCTTC
1 TTTTCTT-TTCTTC
784817 TTTTCTTTTCTTC
1 TTTTCTTTTCTTC
784830 TTTT-TTTT
1 TTTTCTTTT
784838 TATCAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 4 0.19
13 10 0.48
14 7 0.33
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTTCTTTTCTTC
Found at i:784960 original size:22 final size:22
Alignment explanation
Indices: 784935--784982 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 22
784925 TATATAATTG
*
784935 AATTA-AAAATAAGTTAATATAT
1 AATTAGAAAATAACTTAATA-AT
*
784957 AATTAGAATATAACTTAATAAT
1 AATTAGAAAATAACTTAATAAT
784979 AATT
1 AATT
784983 TAATTTAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 11 0.48
23 12 0.52
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (22 bp):
AATTAGAAAATAACTTAATAAT
Found at i:784990 original size:16 final size:16
Alignment explanation
Indices: 784921--784998 Score: 50
Period size: 16 Copynumber: 4.8 Consensus size: 16
784911 TATATTAAAG
*
784921 TTAATATATAATTGAA-
1 TTAATA-ATAATTTAAT
* *
784937 TTAAAAATAAGTTAAT
1 TTAATAATAATTTAAT
* * * *
784953 ATATAATTAGAATATAAC
1 -T-TAATAATAATTTAAT
784971 TTAATAATAATTTAAT
1 TTAATAATAATTTAAT
*
784987 TTAATGATAATT
1 TTAATAATAATT
784999 AAAGATAATT
Statistics
Matches: 45, Mismatches: 14, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
15 7 0.16
16 27 0.60
17 2 0.04
18 9 0.20
ACGTcount: A:0.51, C:0.01, G:0.05, T:0.42
Consensus pattern (16 bp):
TTAATAATAATTTAAT
Found at i:787631 original size:19 final size:19
Alignment explanation
Indices: 787596--787634 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
787586 TAAATAATAA
787596 TTTAAATTAAATCAAATCAT
1 TTTAAATTAAA-CAAATCAT
787616 TTTAAATTACAA-AAATCAT
1 TTTAAATTA-AACAAATCAT
787635 ATACCAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 9 0.50
21 2 0.11
ACGTcount: A:0.51, C:0.10, G:0.00, T:0.38
Consensus pattern (19 bp):
TTTAAATTAAACAAATCAT
Found at i:788108 original size:24 final size:23
Alignment explanation
Indices: 788076--788122 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
788066 ATACTTTATT
788076 TTTATATAAGAAAAATTTAAAAA
1 TTTATATAAGAAAAATTTAAAAA
* * *
788099 TTTATTATAATATATATTTAAAAA
1 TTTA-TATAAGAAAAATTTAAAAA
788123 CTTAAACCCG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (23 bp):
TTTATATAAGAAAAATTTAAAAA
Found at i:791609 original size:29 final size:29
Alignment explanation
Indices: 791563--791632 Score: 97
Period size: 29 Copynumber: 2.4 Consensus size: 29
791553 TTTTATACAA
* *
791563 CGATTCAAGCTTTCAACCT-AGGCTAGGTT
1 CGATTCAAGCTTTCAACCTGA-ACTAGGTC
*
791592 CGATTCAAGCTTTTAACCTGAACTAGGTC
1 CGATTCAAGCTTTCAACCTGAACTAGGTC
791621 CGATTCAAGCTT
1 CGATTCAAGCTT
791633 GGACAAGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 36 0.97
30 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (29 bp):
CGATTCAAGCTTTCAACCTGAACTAGGTC
Found at i:791956 original size:24 final size:25
Alignment explanation
Indices: 791910--791956 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
791900 TAAATTATAT
*
791910 AATAATATATATAAATATAAAAATA
1 AATAATATATATAAATAAAAAAATA
791935 AATAAT-TATAT-AATAGAAAAAA
1 AATAATATATATAAATA-AAAAAA
791957 GCCAAGGTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 4 0.20
24 10 0.50
25 6 0.30
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (25 bp):
AATAATATATATAAATAAAAAAATA
Found at i:795267 original size:21 final size:21
Alignment explanation
Indices: 795241--795287 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
795231 TCACTTGAAG
795241 TCCCAAAAAGAATGCTAATTC
1 TCCCAAAAAGAATGCTAATTC
795262 TCCCAAAAAGAATGCTAATTC
1 TCCCAAAAAGAATGCTAATTC
795283 TCCCA
1 TCCCA
795288 TCATGCTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.40, C:0.28, G:0.09, T:0.23
Consensus pattern (21 bp):
TCCCAAAAAGAATGCTAATTC
Found at i:800230 original size:20 final size:20
Alignment explanation
Indices: 800205--800258 Score: 92
Period size: 20 Copynumber: 2.7 Consensus size: 20
800195 GTTAGAAGTA
800205 ATGTATCGATACAAT-TCATC
1 ATGTATCGATACAATGT-ATC
800225 ATGTATCGATACAATGTATC
1 ATGTATCGATACAATGTATC
800245 ATGTATCGATACAA
1 ATGTATCGATACAA
800259 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 32 0.97
21 1 0.03
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACAATGTATC
Found at i:800311 original size:19 final size:21
Alignment explanation
Indices: 800287--800339 Score: 76
Period size: 19 Copynumber: 2.7 Consensus size: 21
800277 CTGCCAGTTT
*
800287 CATGTATCGATACAATG-A-A
1 CATGTATCGATACAAAGCATA
800306 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAAAGCATA
800327 -ATGTATCGATACA
1 CATGTATCGATACA
800340 TCTGGGTCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
19 16 0.52
20 14 0.45
21 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (21 bp):
CATGTATCGATACAAAGCATA
Found at i:800925 original size:19 final size:19
Alignment explanation
Indices: 800901--800965 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
800891 TAGCCAAACT
800901 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
800920 TGTATCGAT--AC--AAT-
1 TGTATCGATACACAAAATA
800934 T-TATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
800954 TGTATCGATACA
1 TGTATCGATACA
800966 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 7 0.18
14 1 0.03
15 5 0.13
17 2 0.05
19 12 0.32
20 1 0.03
21 10 0.26
ACGTcount: A:0.45, C:0.15, G:0.11, T:0.29
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:800944 original size:32 final size:33
Alignment explanation
Indices: 800903--800965 Score: 110
Period size: 34 Copynumber: 1.9 Consensus size: 33
800893 GCCAAACTTG
800903 TATCGATACAC-AAAATATGTATCGATACAATT
1 TATCGATACACAAAAATATGTATCGATACAATT
800935 TATCGATACACAAAAAATATGTATCGATACA
1 TATCGATACAC-AAAAATATGTATCGATACA
800966 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 11 0.38
34 18 0.62
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.29
Consensus pattern (33 bp):
TATCGATACACAAAAATATGTATCGATACAATT
Found at i:805030 original size:15 final size:15
Alignment explanation
Indices: 805010--805040 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
805000 TAAAAATGTC
*
805010 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
805025 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
805040 C
1 C
805041 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:807287 original size:20 final size:20
Alignment explanation
Indices: 807244--807289 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
807234 AAATCTTTTG
807244 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
807265 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
807285 CAAAA
1 CAAAA
807290 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:809665 original size:19 final size:19
Alignment explanation
Indices: 809641--809705 Score: 70
Period size: 21 Copynumber: 3.6 Consensus size: 19
809631 TAGCCAAACT
809641 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAATA
809660 TGTATCGAT--AC---A-A
1 TGTATCGATACACAAAATA
809673 TGTATCGATACACAAAAAATA
1 TGTATCGATACAC--AAAATA
809694 TGTATCGATACA
1 TGTATCGATACA
809706 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 9 0.24
20 1 0.03
21 13 0.34
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (19 bp):
TGTATCGATACACAAAATA
Found at i:809677 original size:13 final size:13
Alignment explanation
Indices: 809659--809684 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
809649 TACACAAAAT
809659 ATGTATCGATACA
1 ATGTATCGATACA
809672 ATGTATCGATACA
1 ATGTATCGATACA
809685 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:809682 original size:32 final size:33
Alignment explanation
Indices: 809641--809705 Score: 114
Period size: 34 Copynumber: 2.0 Consensus size: 33
809631 TAGCCAAACT
809641 TGTATCGATACAC-AAAATATGTATCGATACAA
1 TGTATCGATACACAAAAATATGTATCGATACAA
809673 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCGATACAC-AAAAATATGTATCGATACA
809706 TTGGCTTGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 13 0.42
34 18 0.58
ACGTcount: A:0.45, C:0.15, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAATATGTATCGATACAA
Found at i:810861 original size:155 final size:152
Alignment explanation
Indices: 810560--811309 Score: 643
Period size: 154 Copynumber: 4.9 Consensus size: 152
810550 TCCTATCACA
* * * * *
810560 GTGACAACCTAAAACTTGATTTTAGAAAAATTATAAAAATGCCCCTATGGTATACCTTCAACATG
1 GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATG-CCCTA-GGTATACCTTCGACATG
*
810625 AAAGTATCCCGGTAACTTTAACGAAA-TTAAAAATGATCATAAATGGGATGAACCTATCCTAAAT
64 AAAGTATCCCGGTAAC-CTAA--AAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAAT
** *
810689 GCACACTTTTGGTATAAAAGCATCCTA
126 GCACACTTTTGACATAAAAGCATCCTG
* ** * * *
810716 ATGACAACCTAGGACTCGGTTTTAAAAAAATTATAAAAATGCTCCTAGGATATACCTTTGACATA
1 GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATGC-CCTAGG-TATACCTTCGACATG
*** *
810781 AAAGTATCTTAGTAACCCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATTC
64 AAAGTATCCCGGTAA-CCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGC
* *
810846 ATACTTTTGACATAAAAACAT-CTCG
128 ACACTTTTGACATAAAAGCATCCT-G
** * * * * **
810871 GTGACAACCTAAAACTCGG-TTTGGAAAAATTACAAAAATGCCTTAGGAAATATCTTTGATGTGA
1 GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATGCCCTAGG-TATACCTTCGACATGA
* *
810935 AAGTA-CCTCGATAACCTAAAAAGACTTCAAAAA-GATCATAAATGAGATGAACCTATCCTAAAT
65 AAGTATCC-CGGTAACCT-AAAA-ACTT-AAAAATGATCATAAATGGGATGAACCTATCCTAAAT
* *
810998 ACACACCTTT-ACCATAAAAGCATCCTG
126 GCACACTTTTGA-CATAAAAGCATCCTG
* ** ** * * *
811025 GTAACAACCTAGGACTTAGTTCTAAGAAAATTACAAAAATGCCTCTAAGGTATACCTTCGTCATG
1 GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATGCC-CT-AGGTATACCTTCGACATG
* * * * *
811090 AAAGTATCCCGGTAACCTTAAAGCTTAGAAATGATCATAAATGGGGTGAACTTATCCTAAATGCA
64 AAAGTATCCCGGTAACCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGCA
* * *
811155 CACTTTTGGCATAGAAGCATCCCG
129 CACTTTTGACATAAAAGCATCCTG
* * * ** * ** * * * * *
811179 CTAACAACCTAAGACTTAGTTCTATGAAAATTAC-GAAATACCTTTAGGTATACCATCGATATGA
1 GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATGCC-CTAGGTATACCTTCGACATGA
* * * * * * *
811243 AAATATCCTGTTAACCTTAAAAGAATTGAAAATGATCATAAAT-GGATGACCCTATCCTAAACGC
65 AAGTATCCCGGTAACC-TAAAA-ACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGC
811307 ACA
128 ACA
811310 ACCTTGGGCT
Statistics
Matches: 486, Mismatches: 89, Indels: 41
0.79 0.14 0.07
Matches are distributed among these distances:
152 33 0.07
153 66 0.14
154 187 0.38
155 104 0.21
156 90 0.19
157 6 0.01
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (152 bp):
GTGACAACCTAAAACTCGGTTTTAAAAAAATTACAAAAATGCCCTAGGTATACCTTCGACATGAA
AGTATCCCGGTAACCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATGCACA
CTTTTGACATAAAAGCATCCTG
Found at i:811211 original size:309 final size:307
Alignment explanation
Indices: 810649--811303 Score: 721
Period size: 308 Copynumber: 2.1 Consensus size: 307
810639 ACTTTAACGA
* * ***
810649 AATT-AAAAATGATCATAAATGGGATGAACCTATCCTAAATGCACACTTTTGGTATAAAAGCATC
1 AATTCAAAAA-GATCATAAAT-GGATGAACCTATCCTAAATACACACCTTTACCATAAAAGCATC
* * * * *
810713 CTAATGACAACCTAGGACTCGGTTTTAAAAAAATTATAAAAATGCTCCTAGGATATACCTTTGAC
64 CTAATAACAACCTAGGACTCAGTTCTAAAAAAATTACAAAAATGCTCCTAGGATATACCTTCGAC
**
810778 ATAAAAGTATCTTAGTAACCCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAA
129 ATAAAAGTATCCCAGTAACCCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAA
* * * * * *
810843 TTCATACTTTTGACATAAAAACATCTCGGTGACAACCTAAAACTCGGTTTGGAAAAATTACAAAA
194 TGCACACTTTTGACATAAAAACATCCCGCTAACAACCTAAAACTCAGTTTGGAAAAATTAC-AAA
* * * * * *
810908 ATGCC-TTAGGAAATATCTTTGATGTGAAAGTA-CCTCGATAACCTAAAAAG
258 ATACCTTTAGG-AATACCATCGATATGAAAATATCCT-GATAACCTAAAAAG
*
810958 ACTTCAAAAAGATCATAAATGAGATGAACCTATCCTAAATACACACCTTTACCATAAAAGCATCC
1 AATTCAAAAAGATCATAAATG-GATGAACCTATCCTAAATACACACCTTTACCATAAAAGCATCC
** * * *
811023 TGGTAACAACCTAGGACTTAGTTCTAAGAAAATTACAAAAATGC-CTCTAAGG-TATACCTTCGT
65 TAATAACAACCTAGGACTCAGTTCTAAAAAAATTACAAAAATGCTC-CT-AGGATATACCTTCGA
* * * * * * *
811086 CATGAAAGTATCCCGGTAA-CCTTAAAGCTTAGAAATGATCATAAATGGGGTGAACTTATCCTAA
128 CATAAAAGTATCCCAGTAACCCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAA
* * * * * * *
811150 ATGCACACTTTTGGCATAGAAGCATCCCGCTAACAACCTAAGACTTAGTTCTATG-AAAATTACG
193 ATGCACACTTTTGACATAAAAACATCCCGCTAACAACCTAAAACTCAGTT-T-GGAAAAATTACA
* * *
811214 AAATACCTTTAGGTATACCATCGATATGAAAATATCCTGTTAACCTTAAAAG
256 AAATACCTTTAGGAATACCATCGATATGAAAATATCCTGATAACCTAAAAAG
* * *
811266 AATTGAAAATGATCATAAATGGATGACCCTATCCTAAA
1 AATTCAAAAAGATCATAAATGGATGAACCTATCCTAAA
811304 CGCACAACCT
Statistics
Matches: 287, Mismatches: 51, Indels: 18
0.81 0.14 0.05
Matches are distributed among these distances:
307 16 0.06
308 132 0.46
309 130 0.45
310 9 0.03
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.27
Consensus pattern (307 bp):
AATTCAAAAAGATCATAAATGGATGAACCTATCCTAAATACACACCTTTACCATAAAAGCATCCT
AATAACAACCTAGGACTCAGTTCTAAAAAAATTACAAAAATGCTCCTAGGATATACCTTCGACAT
AAAAGTATCCCAGTAACCCTAAAAACTTAAAAATGATCATAAATGGGATGAACCTATCCTAAATG
CACACTTTTGACATAAAAACATCCCGCTAACAACCTAAAACTCAGTTTGGAAAAATTACAAAATA
CCTTTAGGAATACCATCGATATGAAAATATCCTGATAACCTAAAAAG
Found at i:814310 original size:20 final size:19
Alignment explanation
Indices: 814255--814310 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
814245 AAAACCCTTA
*
814255 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
814275 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
814295 AATGTATCGATACATG
1 AAAGTATCGATACATG
814311 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:814387 original size:13 final size:13
Alignment explanation
Indices: 814369--814394 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
814359 TACAGCAATT
814369 ATGTATCGATACA
1 ATGTATCGATACA
814382 ATGTATCGATACA
1 ATGTATCGATACA
814395 CGAAAAAGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:814439 original size:86 final size:86
Alignment explanation
Indices: 814294--814502 Score: 377
Period size: 86 Copynumber: 2.4 Consensus size: 86
814284 ATACATGTTG
*
814294 CAATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
*
814359 TACAGCAATTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
814380 CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
1 CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
814445 TACAGCAAGTATGTATCGATA
66 TACAGCAAGTATGTATCGATA
814466 CAATGTATCGATACAC-AAAAA-ATTGTATCGATACATT
1 CAATGTATCGATACACGAAAAAGA-TGTATCGATACATT
814503 GGCTTGTAAC
Statistics
Matches: 120, Mismatches: 2, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
84 1 0.01
85 19 0.16
86 100 0.83
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (86 bp):
CAATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGA
TACAGCAAGTATGTATCGATA
Found at i:814473 original size:13 final size:13
Alignment explanation
Indices: 814455--814480 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
814445 TACAGCAAGT
814455 ATGTATCGATACA
1 ATGTATCGATACA
814468 ATGTATCGATACA
1 ATGTATCGATACA
814481 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:816730 original size:21 final size:21
Alignment explanation
Indices: 816697--816741 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
816687 TTGCAAGTTG
*
816697 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
816719 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
816739 AAA
1 AAA
816742 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:818565 original size:15 final size:15
Alignment explanation
Indices: 818545--818575 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
818535 TAAAATTGTC
*
818545 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
818560 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
818575 C
1 C
818576 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:820672 original size:13 final size:13
Alignment explanation
Indices: 820654--820692 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
820644 ACATTTTTCT
820654 TTGTATCGATACA
1 TTGTATCGATACA
820667 TTGTATCGATACA
1 TTGTATCGATACA
820680 TTGTATCGATACA
1 TTGTATCGATACA
820693 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:820856 original size:20 final size:20
Alignment explanation
Indices: 820813--820858 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
820803 AAATCTTTTG
820813 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
820834 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
820854 CAAAA
1 CAAAA
820859 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:823267 original size:73 final size:73
Alignment explanation
Indices: 823165--823323 Score: 309
Period size: 73 Copynumber: 2.2 Consensus size: 73
823155 ACATGTTGCA
*
823165 ATGTATCGATACATGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGATA
1 ATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGATA
823230 CAGCAAGT
66 CAGCAAGT
823238 ATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGATA
1 ATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGATA
823303 CAGCAAGT
66 CAGCAAGT
823311 ATGTATCGATACA
1 ATGTATCGATACA
823324 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 85 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (73 bp):
ATGTATCGATACACGAAAAAGATGTATCGATACATTTCTTGGCAGTAGCCAAACTTGTATCGATA
CAGCAAGT
Found at i:823329 original size:13 final size:13
Alignment explanation
Indices: 823311--823336 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
823301 TACAGCAAGT
823311 ATGTATCGATACA
1 ATGTATCGATACA
823324 ATGTATCGATACA
1 ATGTATCGATACA
823337 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:825183 original size:17 final size:17
Alignment explanation
Indices: 825161--825202 Score: 84
Period size: 17 Copynumber: 2.5 Consensus size: 17
825151 AAAAGGTAAT
825161 TTGAATAGAGGACTTAA
1 TTGAATAGAGGACTTAA
825178 TTGAATAGAGGACTTAA
1 TTGAATAGAGGACTTAA
825195 TTGAATAG
1 TTGAATAG
825203 GTCAATTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.40, C:0.05, G:0.24, T:0.31
Consensus pattern (17 bp):
TTGAATAGAGGACTTAA
Found at i:829425 original size:16 final size:16
Alignment explanation
Indices: 829399--829440 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
829389 GGAAGAAAAT
*
829399 AAATCAAAATTTGTTGA
1 AAAT-AAAATTTCTTGA
829416 AAATAAAA-TTCTTGA
1 AAATAAAATTTCTTGA
*
829431 AAAGAAAATT
1 AAATAAAATT
829441 GTCGAACTAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 13 0.59
16 5 0.23
17 4 0.18
ACGTcount: A:0.55, C:0.05, G:0.10, T:0.31
Consensus pattern (16 bp):
AAATAAAATTTCTTGA
Found at i:832097 original size:16 final size:16
Alignment explanation
Indices: 832073--832104 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
832063 AAAGGCTTTC
*
832073 AAAATTTTTAATAGAA
1 AAAAGTTTTAATAGAA
832089 AAAAGTTTTAATAGAA
1 AAAAGTTTTAATAGAA
832105 GAAATGTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.34
Consensus pattern (16 bp):
AAAAGTTTTAATAGAA
Found at i:833480 original size:20 final size:21
Alignment explanation
Indices: 833455--833493 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
833445 ATTTTTTAGA
*
833455 ATGTATTGATACAT-TGAATG
1 ATGTATCGATACATATGAATG
833475 ATGTATCGATACATATGAA
1 ATGTATCGATACATATGAA
833494 AAAACTCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (21 bp):
ATGTATCGATACATATGAATG
Found at i:833670 original size:21 final size:20
Alignment explanation
Indices: 833646--833693 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
833636 TAAATCTTTC
833646 TCAAAATTCATCT-TTTTCACA
1 TCAAAATT-ATCTGTTTT-ACA
* *
833667 TCAAAACTATCTGTTTTTCA
1 TCAAAATTATCTGTTTTACA
833687 TCAAAAT
1 TCAAAAT
833694 ATTTATCAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 12 0.52
21 11 0.48
ACGTcount: A:0.35, C:0.21, G:0.02, T:0.42
Consensus pattern (20 bp):
TCAAAATTATCTGTTTTACA
Found at i:835921 original size:13 final size:13
Alignment explanation
Indices: 835903--835929 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
835893 ACATTATGCT
835903 TTGTATCGATACA
1 TTGTATCGATACA
835916 TTGTATCGATACA
1 TTGTATCGATACA
835929 T
1 T
835930 GCTCTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:835940 original size:19 final size:19
Alignment explanation
Indices: 835915--835969 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 19
835905 GTATCGATAC
835915 ATTGTATCGATACATGCTCT
1 ATTGTATCGATACATGCT-T
* * *
835935 -TTGTATAGATATATTCTT
1 ATTGTATCGATACATGCTT
835953 AATTGTATCGATACATG
1 -ATTGTATCGATACATG
835970 AAACTGGTAG
Statistics
Matches: 27, Mismatches: 6, Indels: 4
0.73 0.16 0.11
Matches are distributed among these distances:
18 1 0.04
19 14 0.52
20 12 0.44
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (19 bp):
ATTGTATCGATACATGCTT
Found at i:837350 original size:23 final size:22
Alignment explanation
Indices: 837316--837359 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
837306 ATAATAATTT
* *
837316 ATTAAATTACATAATGGAAAAA
1 ATTAAATAACATAATCGAAAAA
*
837338 ATTAAATCAACATTATCGAAAA
1 ATTAAAT-AACATAATCGAAAA
837360 CCATCAGAGG
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.57, C:0.09, G:0.07, T:0.27
Consensus pattern (22 bp):
ATTAAATAACATAATCGAAAAA
Found at i:843200 original size:79 final size:79
Alignment explanation
Indices: 843063--843649 Score: 503
Period size: 79 Copynumber: 7.3 Consensus size: 79
843053 TTGGAGATAG
* *
843063 TAACGGGGTTGGAGTATCCCCGATTATCGA-AAATTGATGTTTTAAAAATAAAATCGGGGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTAT-GAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGA
843127 GTATCCCCGT-GAAAA
65 GTATCCCC-TCGAAAA
* * * ** **
843142 TAATGGGGTTGGAGTATCCCCGATTATGAGAAATCGATATTTTAGAAATAAGGCCGGGGTTAAAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
*
843207 TATCCCCGATTTTGAGAAA
66 TATCCCC----TCGA-AAA
**** * * ***
843226 TCAA-TATTTTAGAAATAAAGCCGAGGTTGGA-GTATCCCCGATGAAAAGTTGATGTTTTAGAAA
1 T-AACGGGGTT-GGAGTATCCCCGA--TT--ATG-A-----GA----AA-TTGATGTTTTAGAAA
* * * ** *
843289 TAAAATCAGGATTGGAGTATCCTTTCGAAAG
49 TAAAACCGGGGTTGGAGTATCCCCTCGAAAA
* * *
843320 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACTGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
*
843385 TATCCCCTCGGAAA
66 TATCCCCTCGAAAA
* * * *
843399 TAACGGGGTTGGAGAATCCCCG---ATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
* *
843461 TATCCCCTCGGAAG
66 TATCCCCTCGAAAA
* * * *
843475 TAACGGGGTTGGAGTATCTCCGATTATGAGTAATTAATATTTTAGAAATAAAACCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
843540 TATCCCCTCGAAAA
66 TATCCCCTCGAAAA
*
843554 TAACGGGGTTGGAGTATCCCCG---ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
*
843616 TGTCCCCTC-AGAAA
66 TATCCCCTCGA-AAA
843630 TAACGGGGTTGGAGTATCCC
1 TAACGGGGTTGGAGTATCCC
843650 TAATGATTAA
Statistics
Matches: 404, Mismatches: 75, Indels: 61
0.75 0.14 0.11
Matches are distributed among these distances:
75 1 0.00
76 134 0.33
78 2 0.00
79 184 0.46
80 2 0.00
82 1 0.00
83 2 0.00
84 8 0.02
85 10 0.02
87 2 0.00
88 1 0.00
89 4 0.01
90 1 0.00
91 2 0.00
93 10 0.02
94 7 0.02
95 3 0.01
98 2 0.00
99 28 0.07
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (79 bp):
TAACGGGGTTGGAGTATCCCCGATTATGAGAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAG
TATCCCCTCGAAAA
Found at i:843212 original size:51 final size:51
Alignment explanation
Indices: 843154--843267 Score: 174
Period size: 51 Copynumber: 2.2 Consensus size: 51
843144 ATGGGGTTGG
* * *
843154 AGTATCCCCGATTATGAGAAATCGATATTTTAGAAATAAGGCCGGGGTTAA
1 AGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGAGGTTAA
* **
843205 AGTATCCCCGATTTTGAGAAATCAATATTTTAGAAATAAAGCCGAGGTTGG
1 AGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGAGGTTAA
843256 AGTATCCCCGAT
1 AGTATCCCCGAT
843268 GAAAAGTTGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.34, C:0.16, G:0.22, T:0.28
Consensus pattern (51 bp):
AGTATCCCCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGAGGTTAA
Found at i:843479 original size:76 final size:76
Alignment explanation
Indices: 843250--843649 Score: 532
Period size: 76 Copynumber: 5.2 Consensus size: 76
843240 ATAAAGCCGA
* * * * **
843250 GGTTGGAGTATCCCCGATGAAAAGTTGATGTTTTAGAAATAAAATCAGGATTGGAGTATCCTTTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC
843315 -GAAAGTAACGG
66 GGAAA-TAACGG
* * * *
843326 GGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACTGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCG---ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
843391 CTCGGAAATAACGG
63 CTCGGAAATAACGG
* * *
843405 GGTTGGAGAATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC
*
843470 GGAAGTAACGG
66 GGAAATAACGG
* ** * *
843481 GGTTGGAGTATCTCCGATTATGAGTAATTAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCC
1 GGTTGGAGTATCCCCG---ATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCC
*
843546 CTCGAAAATAACGG
63 CTCGGAAATAACGG
*
843560 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC
*
843625 AGAAATAACGG
66 GGAAATAACGG
843636 GGTTGGAGTATCCC
1 GGTTGGAGTATCCC
843650 TAATGATTAA
Statistics
Matches: 281, Mismatches: 36, Indels: 14
0.85 0.11 0.04
Matches are distributed among these distances:
76 150 0.53
79 127 0.45
80 4 0.01
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (76 bp):
GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTC
GGAAATAACGG
Found at i:843534 original size:155 final size:155
Alignment explanation
Indices: 843250--843649 Score: 665
Period size: 155 Copynumber: 2.6 Consensus size: 155
843240 ATAAAGCCGA
* * **
843250 GGTTGGAGTATCCCCGATGAAAAGTTGATGTTTTAGAAATAAAATCAGGATTGGAGTATCCTTTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
* *
843315 GAAAGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACTGGGGT
66 GGAAGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGT
*
843380 TGGAGTATCCCCTCGGAAATAACGG
131 TGGAGTATCCCCTCGAAAATAACGG
*
843405 GGTTGGAGAATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
* *
843470 GGAAGTAACGGGGTTGGAGTATCTCCGATTATGAGTAATTAATATTTTAGAAATAAAACCGGGGT
66 GGAAGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGT
843535 TGGAGTATCCCCTCGAAAATAACGG
131 TGGAGTATCCCCTCGAAAATAACGG
* * *
843560 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTGTCCCCTC
1 GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
* *
843625 AGAAATAACGGGGTTGGAGTATCCC
66 GGAAGTAACGGGGTTGGAGTATCCC
843650 TAATGATTAA
Statistics
Matches: 228, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
155 228 1.00
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.27
Consensus pattern (155 bp):
GGTTGGAGTATCCCCGATGAAAAATTGATGTTTTAGAAATAAAATCGGGATTGGAGTATCCCCTC
GGAAGTAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAATATTTTAGAAATAAAACCGGGGT
TGGAGTATCCCCTCGAAAATAACGG
Found at i:843813 original size:51 final size:50
Alignment explanation
Indices: 843666--843846 Score: 211
Period size: 51 Copynumber: 3.5 Consensus size: 50
843656 TTAATGGGGC
** * *
843666 TGGAGTATCCCCGATTGTAAAAAATTAGTATTTTTGGAAATAAAATC-GGAGT
1 TGGAGTATCCCCGATTGTGGAAAATTAGT-GTTTT-GAAATAAAACCAGG-GT
* * ** *
843718 TGGGGCATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCAGGGT
1 TGGAGTATCCCCGATT-GTGGAAAATTAGTGTTTTG-AAATAAAACCAGGGT
843770 TGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCAGGGT
1 TGGAGTATCCCCGATTGTGGAAAATTAGTGTTTT-GAAATAAAACCAGGGT
*
843821 TGGAGTATCCCCGATTGTGCAAAATT
1 TGGAGTATCCCCGATTGTGGAAAATT
843847 GAGAAACTTA
Statistics
Matches: 110, Mismatches: 15, Indels: 9
0.82 0.11 0.07
Matches are distributed among these distances:
51 56 0.51
52 44 0.40
53 10 0.09
ACGTcount: A:0.34, C:0.13, G:0.24, T:0.29
Consensus pattern (50 bp):
TGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTGAAATAAAACCAGGGT
Found at i:845294 original size:27 final size:27
Alignment explanation
Indices: 845264--845326 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
845254 GAAAGCCAAG
845264 GAACACAAAAAAGTCCTAAACTACCAC
1 GAACACAAAAAAGTCCTAAACTACCAC
*
845291 GAACAAAAAAAAGTCCTAAACTACCAC
1 GAACACAAAAAAGTCCTAAACTACCAC
845318 -AA-ACAAAAA
1 GAACACAAAAA
845327 CCACAAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
25 6 0.18
26 2 0.06
27 26 0.76
ACGTcount: A:0.59, C:0.25, G:0.06, T:0.10
Consensus pattern (27 bp):
GAACACAAAAAAGTCCTAAACTACCAC
Found at i:846249 original size:13 final size:13
Alignment explanation
Indices: 846231--846256 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
846221 ACAAAGATCG
846231 ATGTATCGATACA
1 ATGTATCGATACA
846244 ATGTATCGATACA
1 ATGTATCGATACA
846257 TTTCCTTGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:846347 original size:19 final size:19
Alignment explanation
Indices: 846287--846348 Score: 54
Period size: 19 Copynumber: 3.2 Consensus size: 19
846277 TAGCGATACA
*
846287 TTGTATCAATACAAAACT-T
1 TTGTATCGATAC-AAACTGT
* **
846306 ATGTATCGATACATTTTCTGT
1 TTGTATCGATACA--AACTGT
846327 TTGTATCGATACAAACTGT
1 TTGTATCGATACAAACTGT
846346 TTG
1 TTG
846349 AAGTTCAAAA
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
18 1 0.03
19 17 0.52
20 2 0.06
21 13 0.39
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.42
Consensus pattern (19 bp):
TTGTATCGATACAAACTGT
Found at i:846404 original size:21 final size:21
Alignment explanation
Indices: 846378--846433 Score: 103
Period size: 21 Copynumber: 2.7 Consensus size: 21
846368 GTTGGGACCT
846378 TGTATCGATACATTCTACAAA
1 TGTATCGATACATTCTACAAA
*
846399 TGTATCGATACATTCTATAAA
1 TGTATCGATACATTCTACAAA
846420 TGTATCGATACATT
1 TGTATCGATACATT
846434 TGGATAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.38
Consensus pattern (21 bp):
TGTATCGATACATTCTACAAA
Found at i:847131 original size:42 final size:42
Alignment explanation
Indices: 847084--847270 Score: 164
Period size: 43 Copynumber: 4.3 Consensus size: 42
847074 CCTGTTTTTC
*
847084 GAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCT
1 GAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTTT
* ** *
847126 AAGGACAAAAGG-AAAA-GGAAAATAAAGTGCGTCCTACTCTTT
1 GAGGAC-AAAGGAAAAAGGGAAACGAAA-TACGTCCTACTCTTT
* * * *
847168 GAGGACTAGAAGGGAAAAGAAGGAAA-TAAAGAGTGTCCTACTCTTT
1 GAGGAC-A-AA-GGAAAA-AGGGAAACGAAATA-CGTCCTACTCTTT
* * *
847214 GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTCTTT
1 GAGGACAAAGGA-AAAAGGGAAACGAAATACGTCCTACTCTTT
*
847257 GAGGACAAAAGAAA
1 GAGGACAAAGGAAA
847271 GAGGAAAATA
Statistics
Matches: 117, Mismatches: 18, Indels: 20
0.75 0.12 0.13
Matches are distributed among these distances:
41 8 0.07
42 30 0.26
43 37 0.32
44 10 0.09
45 4 0.03
46 23 0.20
47 5 0.04
ACGTcount: A:0.44, C:0.14, G:0.26, T:0.16
Consensus pattern (42 bp):
GAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTTT
Found at i:847276 original size:42 final size:40
Alignment explanation
Indices: 847084--847304 Score: 163
Period size: 42 Copynumber: 5.2 Consensus size: 40
847074 CCTGTTTTTC
* * * *
847084 GAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCT
1 GAGGACAAAAG-AAAA-GGAAAAGAAATGCGTCCTACTCTTT
* *
847126 AAGGACAAAAGGAAAAGGAAAATAAAGTGCGTCCTACTCTTT
1 GAGGACAAAA-GAAAAGGAAAAGAAA-TGCGTCCTACTCTTT
* * * * *
847168 GAGGACTAGAAGGGAAAAGAAGGAAATAAAGAGTGTCCTACTCTTT
1 GAGGAC-A-AA-AGAAAAG--GAAAAGAAA-TGCGTCCTACTCTTT
*
847214 GAGGACAAAGGAGAAAAGGAAAACGAAATGCGTCCTGCTCTTT
1 GAGGACAAA--AGAAAAGGAAAA-GAAATGCGTCCTACTCTTT
* * *
847257 GAGGACAAAAGAAAGAGGAAAATAAAGTGAGTCCTGCTCTTT
1 GAGGACAAAAGAAA-AGGAAAAGAAA-TGCGTCCTACTCTTT
*
847299 AAGGAC
1 GAGGAC
847305 TACAAAATGC
Statistics
Matches: 148, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
41 16 0.11
42 56 0.38
43 27 0.18
44 13 0.09
45 8 0.05
46 28 0.19
ACGTcount: A:0.43, C:0.14, G:0.26, T:0.17
Consensus pattern (40 bp):
GAGGACAAAAGAAAAGGAAAAGAAATGCGTCCTACTCTTT
Found at i:847434 original size:55 final size:54
Alignment explanation
Indices: 847350--847642 Score: 347
Period size: 55 Copynumber: 5.3 Consensus size: 54
847340 GAAAAAAGCG
* * * *
847350 TCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * *
847405 TCCTGCTCTTTAAAGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG-A
1 TCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * * *
847459 GTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCG
1 -TCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * *
847515 TCCTGCTCTTTGAGGACT-GAAGGGTGCCACCAACTCGTGTGGGCTTTAAACGGCG
1 TCCTGCTCTTTGAGGACTGGAA--GTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
* * *
847570 TCCTGTTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGA-AGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
*
847625 TCCTGCTCTTTAAGGACT
1 TCCTGCTCTTTGAGGACT
847643 AAAGGGTGAA
Statistics
Matches: 208, Mismatches: 23, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
54 6 0.03
55 198 0.95
56 4 0.02
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
Found at i:847602 original size:165 final size:166
Alignment explanation
Indices: 847280--847647 Score: 442
Period size: 165 Copynumber: 2.2 Consensus size: 166
847270 AGAGGAAAAT
**
847280 AAAGTGAGTCCTGCTCTTTAAGGACTACAAAATGCCACCAACTTGTGTGGGCTTTGAAAAGAAAA
1 AAAG-GAGTCCTGCTCTTTAAGGACTA-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG----
* * *
847345 AAGCGTCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCATCCTG
60 -AGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTG
* *
847410 CTCTTTAAAGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTA
124 CTCTTTAAAGACTGGGAAGTGCCACCAACTCGTGTGGGCTTTA
* *
847453 AAAGGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTG-AAAG-GCGT
1 AAAGGAGTCCTGCTCTTTAAGGACT-AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGCGT
** * *
847516 CCTGCTCTTTGAGGACT-GAAGGGTGCCACCAACTCGTGTGGGCTTT-AAACGGCGTCCTGTTCT
65 CCTGCTCTTTGAGGACTGGAA-AATGCCACCAACTCGTGTGGGCTTTGAAA-GGCATCCTGCTCT
* * *
847579 TTGAGGACT-GGAGGGTGCCACCAACTCGTGTGGGCTTTA
128 TTAAAGACTGGGA-AGTGCCACCAACTCGTGTGGGCTTTA
847618 AAAGGCA-TCCTGCTCTTTAAGGACTAAAGG
1 AAAGG-AGTCCTGCTCTTTAAGGACTAAAGG
847648 GTGAAAAAAG
Statistics
Matches: 173, Mismatches: 17, Indels: 19
0.83 0.08 0.09
Matches are distributed among these distances:
164 14 0.08
165 104 0.60
166 1 0.01
171 4 0.02
172 45 0.26
173 5 0.03
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (166 bp):
AAAGGAGTCCTGCTCTTTAAGGACTAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAGCGTC
CTGCTCTTTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCATCCTGCTCTTTA
AAGACTGGGAAGTGCCACCAACTCGTGTGGGCTTTA
Found at i:847648 original size:110 final size:110
Alignment explanation
Indices: 847342--847650 Score: 406
Period size: 110 Copynumber: 2.8 Consensus size: 110
847332 TTTGAAAAGA
* * ** *
847342 AAAAAGCGTCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTGAAAGGCATC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
* **
847407 CTGCTCTTTAAAGA-T-TGGGAAGTGCCACCAACTTGTGTGGGCTTT
66 CTGCTCTTTAAGGACTAAAGG--GTGCCACCAACTTGTGTGGGCTTT
* * * *
847452 AAAAGGAGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCGTC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
* * *
847517 CTGCTCTTTGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTT
66 CTGCTCTTTAAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT
* * * * *
847562 AAACGGCGTCCTGTTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATC
1 AAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
847627 CTGCTCTTTAAGGACTAAAGGGTG
66 CTGCTCTTTAAGGACTAAAGGGTG
847651 AAAAAAGAGC
Statistics
Matches: 172, Mismatches: 25, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
110 169 0.98
111 1 0.01
112 2 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.28
Consensus pattern (110 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATC
CTGCTCTTTAAGGACTAAAGGGTGCCACCAACTTGTGTGGGCTTT
Found at i:847756 original size:61 final size:59
Alignment explanation
Indices: 847661--847967 Score: 313
Period size: 55 Copynumber: 5.3 Consensus size: 59
847651 AAAAAAGAGC
*
847661 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCATCCTGCTCTTTGAGGACTAGAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAG
* * *
847722 GCATCCTACTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGG-TTT----TGAAAG
1 GCATCCTGCTCTTTGAGGACT-AGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAG
* * * * *
847777 GCGTCCTGCTCTTTGAGGGCTGGAAAATGCCATCAACTCGTGTGGGCTTT-----GAAAG
1 GCATCCTGCTCTTTGAGGACTAG-AAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAG
* *
847832 GCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCATCCTGCTCTTTGAGGACTA-GAAATGCCACCAACTTGTGTGGGCTTTAAAAGGA-AAG
* *
847893 GCATCCTACTCTTTGAGGACTA-AAAGGTGCCACCAGCTTGTGTGGGCTTT---A--AAAG
1 GCATCCTGCTCTTTGAGGACTAGAAA--TGCCACCAACTTGTGTGGGCTTTAAAAGGAAAG
847948 GCATCCTGCTCTTTGAGGAC
1 GCATCCTGCTCTTTGAGGAC
847968 AAAAAGGCGA
Statistics
Matches: 215, Mismatches: 19, Indels: 30
0.81 0.07 0.11
Matches are distributed among these distances:
54 1 0.00
55 112 0.52
56 7 0.03
58 1 0.00
59 2 0.01
60 5 0.02
61 83 0.39
62 4 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (59 bp):
GCATCCTGCTCTTTGAGGACTAGAAATGCCACCAACTTGTGTGGGCTTTAAAAGGAAAG
Found at i:847788 original size:265 final size:259
Alignment explanation
Indices: 847402--847887 Score: 694
Period size: 265 Copynumber: 1.9 Consensus size: 259
847392 GCTTTGAAAG
* * *
847402 GCATCCTGCTCTTTAAAGATTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTGCT
1 GCATCCTGCTCTTTAAAGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTACT
* **
847467 CTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
66 CTTTGAGGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
** * *
847532 T-GAAGGGTGCCACCAACTCGTGTGGGCTTT-AAACGGCGTCCTGTTCTTTGAGGACT-GGAGGG
131 TGGAA-AATGCCACCAACTCGTGTGGGCTTTGAAA-GGCGTCCTGCTCTTTGAGGACTAGGA-AG
847594 TGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAAAAGA
193 TGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAAAAGA
847659 GC
258 GC
* *
847661 GCATCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCA
1 GCATCCTGCTCTTTAAAGACTGAGAA-GTGCCACCAACTTGTGTGGGCTTTAAAA-G-G-A-G--
*
847725 TCCTACTCTTTGAGGACTGAGAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTCT
59 TCCTACTCTTTGAGGACTGA-AAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* *
847789 TTGAGGGCTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
123 TTGAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
*
847854 GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
188 GGAAGTGCCACCAACTCGTGTGGGCTTTAAAAGG
847888 AGAAGGCATC
Statistics
Matches: 200, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
258 3 0.01
259 46 0.23
260 1 0.00
261 1 0.00
262 1 0.00
263 1 0.00
265 136 0.68
266 11 0.05
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (259 bp):
GCATCCTGCTCTTTAAAGACTGAGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTACT
CTTTGAGGACTGAAAGATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
TGGAAAATGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAGGAAGTGC
CACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAAAAGAGC
Found at i:847792 original size:210 final size:204
Alignment explanation
Indices: 847460--847853 Score: 551
Period size: 210 Copynumber: 1.9 Consensus size: 204
847450 TTAAAAGGAG
* * *
847460 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
** *
847525 TGAGGACTGAAGGGTGCCACCAACTCGTGTGGGCTTTAAACGGCGTCCTGTTCTTTGAGGACTGG
66 TGAGGACTGAAGAATGCCACCAACTCGTGTGGGCTTTAAACGGCGTCCTGCTCTTTGAGGACTGG
***
847590 AGGGTGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAA
131 AAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAA
847655 AAGAGCGCA
196 AAGAGCGCA
847664 TCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCC
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCATCC
*
847728 TACTCTTTGAGGACTG-AGAAATGCCACCAACTCGTGTGGGTTTTGAAA-GGCGTCCTGCTCTTT
59 TACTCTTTGAGGACTGAAG-AATGCCACCAACTCGTGTGGGCTTT-AAACGGCGTCCTGCTCTTT
* * * * *
847791 GAGGGCTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
122 GAGGACTGGAAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTA
847854 GGAAGTGCCA
Statistics
Matches: 166, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
203 1 0.01
204 44 0.27
209 4 0.02
210 114 0.69
211 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.27
Consensus pattern (204 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTACTCTT
TGAGGACTGAAGAATGCCACCAACTCGTGTGGGCTTTAAACGGCGTCCTGCTCTTTGAGGACTGG
AAAATGCCACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAA
AAGAGCGCA
Found at i:847894 original size:116 final size:109
Alignment explanation
Indices: 847661--847967 Score: 321
Period size: 116 Copynumber: 2.7 Consensus size: 109
847651 AAAAAAGAGC
**
847661 GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCAT
1 GCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCAT
* *
847726 CCTACTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGTTTTGAAAG
59 CCTGCTCTTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGTTTGGAAAG
* * * * *
847777 GCGTCCTGCTCTTTGAGGGCTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 GCATCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
* *
847842 CTTTGAGGACT-AGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
65 CTTTGAGGACTGA-GAAATGCCACCAACTCGTGTGGG-TTT----GGA-AAG
* * *
847893 GCATCCTACTCTTTGAGGACT-AAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGC
1 GCATCCTGCTCTTTGAGGACTGAAAA--TGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGC
847957 TCTTTGAGGAC
64 TCTTTGAGGAC
847968 AAAAAGGCGA
Statistics
Matches: 162, Mismatches: 20, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
109 1 0.01
110 43 0.27
111 5 0.03
114 4 0.02
115 2 0.01
116 107 0.66
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (109 bp):
GCATCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCTC
TTTGAGGACTGAGAAATGCCACCAACTCGTGTGGGTTTGGAAAG
Found at i:848062 original size:326 final size:321
Alignment explanation
Indices: 847346--848562 Score: 1570
Period size: 326 Copynumber: 3.8 Consensus size: 321
847336 AAAAGAAAAA
* * * *
847346 AGCGTCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTT-----G-AAAGGCA
1 AGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * * * * *
847405 TCCTGCTCTTTAAAGATTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGTCCTGCTCT
66 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * **
847469 TTGAGGACTGAAAGGTGCCACCAACTTTTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT-
131 TTGAGGACTGAAA-ATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
* * * * ** *
847533 GAAGGGTGCCACCAACTCGTGTGGGCTTTA-AACGGCGTCCTGTTCTTTGAGGACTGGAGGGTGC
195 GAA-GGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGC
* * * * * ** *
847597 CACCAACTCGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACTAAAGGGTGAAAAAAGAG
259 CACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAAGGAGGG
* * * *
847660 CGCATCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGC
1 AGCGTCCTGCTCTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGC
* * * *
847724 ATCCTACTCTTTGAGGACTGAGAA-ATGCCACCAACTCGTGTGGGTTTTGAAAGGCGTCCTGCTC
65 ATCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
*
847788 TTTGAGGGCTGGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
130 TTTGAGGACT-GAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACT
*
847853 AGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTACTCTTTGAGGACTAAA
194 A-GAAGGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCATCCTGCTCTTTGAGGACTAAA
*
847917 AGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACAAAAAGGCGAAAGG
253 AGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAAGG
847982 AGGG
318 AGGG
* * *
847986 AGTGTCCTGGTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 AGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * *
848051 TCCTGCTCTTTGAGGACT-ACAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCGTCCTACTCT
66 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* **
848115 TTGAGGACTGGAAAATGCCATCAACTCATGTGGGCTTTGAAAGGTATCCTGCTCTTTGAGGACTA
131 TTGAGGACT-GAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTA
*
848180 GGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTTTGAGGACTAAAA
195 -GAAGGTGCCACCAACTTGTGTGGGCTTT---A-GA-AAGGCATCCTGCTCTTTGAGGACTAAAA
*
848244 GGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAAGGA
254 GGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAAGGA
848309 GGG
319 GGG
* * *
848312 AGCGTCCTACTCTTTGAGGACTGGGAAGTTCCACCAACTTGTGTGGGCTTTATAAGGAAAAGGCA
1 AGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * * *
848377 TCCTGCTCTTTGAGGACTCA-AAGGTGCCACCAGCTTGTTTGGGCTTTGAAAGGCGTCCTGCTTT
66 TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* *
848441 TTGAGGACT-AAAAGGTGCCA-CTAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTCTTTGAGGAC
131 TTGAGGACTGAAAA--TGCCATC-AACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGAC
* *
848504 TAAAAGGCGCCACCAACTTGTGTGGGCTTT-GAAAGGCATCCTGCTCTTTGAGGACTAAA
193 TAGAAGGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCATCCTGCTCTTTGAGGACTAAA
848563 GGGCGAAAGG
Statistics
Matches: 801, Mismatches: 79, Indels: 40
0.87 0.09 0.04
Matches are distributed among these distances:
313 2 0.00
314 41 0.05
319 1 0.00
320 163 0.20
321 6 0.01
322 3 0.00
323 1 0.00
324 4 0.00
325 7 0.01
326 569 0.71
327 4 0.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (321 bp):
AGCGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
TCCTGCTCTTTGAGGACTGAGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
TTGAGGACTGAAAATGCCATCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGACTAG
AAGGTGCCACCAACTTGTGTGGGCTTTAGAAAGGCATCCTGCTCTTTGAGGACTAAAAGGTGCCA
CCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTAAGGACAAAAAGGCGAAAGGAGGG
Found at i:848116 original size:155 final size:155
Alignment explanation
Indices: 847834--848455 Score: 850
Period size: 155 Copynumber: 3.9 Consensus size: 155
847824 TTTGAAAGGC
*
847834 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* *
847899 TACTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
847964 GGACAAAAAGGCGAAAGGAGGGAGT
131 GGACAAAAAGGCGAAAGGAGGGAGT
* * *
847989 GTCCTGGTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * *
848054 TGCTCTTTGAGGACTACAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCGTCCTACTCTTTGA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
* * *
848119 GGACTGGAAAATGCCATCAACTCATGTG-GGCTTTGAAAGGT
131 GGAC---AAAAAGGC--GAA---A-G-GAGG----G--A-GT
* * *
848160 ATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
*
848225 TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTAA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
*
848290 GGACAAAAAGGCGAAAGGAGGGAGC
131 GGACAAAAAGGCGAAAGGAGGGAGT
* * * *
848315 GTCCTACTCTTTGAGGACTGGGAAGTTCCACCAACTTGTGTGGGCTTTATAAGGAAAAGGCATCC
1 GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
* * * *
848380 TGCTCTTTGAGGACTCAAAGGTGCCACCAGCTTGTTTGGGCTTTGAAAGGCGTCCTGCTTTTTGA
66 TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
*
848445 GGACTAAAAGG
131 GGACAAAAAGG
848456 TGCCACTAAC
Statistics
Matches: 410, Mismatches: 39, Indels: 36
0.85 0.08 0.07
Matches are distributed among these distances:
155 254 0.62
156 1 0.00
158 7 0.02
160 2 0.00
161 1 0.00
162 3 0.01
163 2 0.00
164 3 0.01
165 1 0.00
166 2 0.00
168 7 0.02
170 1 0.00
171 126 0.31
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (155 bp):
GTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCC
TGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCATCCTGCTCTTTGA
GGACAAAAAGGCGAAAGGAGGGAGT
Found at i:848134 original size:55 final size:55
Alignment explanation
Indices: 847990--848293 Score: 306
Period size: 55 Copynumber: 5.3 Consensus size: 55
847980 GGAGGGAGTG
* * *
847990 TCCTGGTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCA
** * * *
848051 TCCTGCTCTTTGAGGACTACAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
* * * ** *
848106 TCCTACTCTTTGAGGACTGGAAAATGCCATCAACTCATGTGGGCTTTGAAAGGTA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
*
848161 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCA
* *
848222 TCCTGCTCTTTGAGGACT-AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
*
848277 TCCTGCTCTTTAAGGAC
1 TCCTGCTCTTTGAGGAC
848294 AAAAAGGCGA
Statistics
Matches: 204, Mismatches: 30, Indels: 24
0.79 0.12 0.09
Matches are distributed among these distances:
55 110 0.54
56 5 0.02
60 4 0.02
61 85 0.42
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCA
Found at i:848220 original size:116 final size:109
Alignment explanation
Indices: 848044--848293 Score: 315
Period size: 116 Copynumber: 2.2 Consensus size: 109
848034 TTTAAAAGGA
*
848044 AAAGGCATCCTGCTCTTTGAGGACTACAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGCGTCC
1 AAAGGCATCCTGCTCTTTGAGGACTACAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
*
848109 TACTCTTTGAGGACTGGAAAA-TGCCATCAACTCATGTGGGCTTTG
66 TACTCTTTGAGGACT--AAAAGTGCCACCAACTCATGTGGGCTTTG
* *
848154 AAAGGTATCCTGCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAA
1 AAAGGCATCCTGCTCTTTGAGGACTA-CAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AA
* * **
848218 GGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAGCTTGTGTGGGCTTTG
59 GGCGTCCTACTCTTTGAGGACTAAAA-GTGCCACCAACTCATGTGGGCTTTG
*
848270 AAAGGCATCCTGCTCTTTAAGGAC
1 AAAGGCATCCTGCTCTTTGAGGAC
848294 AAAAAGGCGA
Statistics
Matches: 121, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
110 48 0.40
111 2 0.02
114 4 0.03
115 2 0.02
116 65 0.54
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (109 bp):
AAAGGCATCCTGCTCTTTGAGGACTACAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCC
TACTCTTTGAGGACTAAAAGTGCCACCAACTCATGTGGGCTTTG
Done.