genome.fa.s419.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold419
Parameters: 2 7 7 80 10 50 1000
Length:  103894

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5759--5783	2	12.5	2	100	0	50	52	0	0	48	1.00
6431--6469	20	2.0	20	85	10	53	35	2	0	61	1.10
8745--8788	12	3.3	13	87	12	63	59	0	2	38	1.10
8743--8794	12	3.7	14	75	15	54	63	0	1	34	1.06
11581--11646	20	3.7	20	73	26	83	34	12	18	34	1.88
11602--11659	13	3.9	13	73	26	53	36	13	17	32	1.89
11582--11679	33	3.0	33	96	1	180	35	12	17	34	1.87
11700--11725	13	2.0	13	100	0	52	30	15	15	38	1.88
11713--11841	52	2.5	52	96	0	240	34	17	18	28	1.94
15875--15900	13	2.0	13	100	0	52	30	23	15	30	1.95
15990--16048	21	2.7	22	89	5	93	38	10	20	30	1.86
16084--16220	53	2.6	53	95	1	247	27	17	18	37	1.93
16190--16260	20	3.5	20	77	11	74	29	12	16	40	1.86
16300--16340	21	2.0	21	85	9	57	39	9	12	39	1.76
17784--17808	13	1.9	13	100	0	50	32	16	16	36	1.90
18365--18411	23	2.0	24	84	12	62	61	19	4	14	1.49
19847--19888	21	2.0	21	85	0	57	21	30	4	42	1.73
21529--21554	13	2.0	13	100	0	52	30	23	15	30	1.95
21644--21702	21	2.7	22	89	5	93	38	10	20	30	1.86
21738--21874	53	2.6	53	95	1	247	27	17	18	37	1.93
21844--21914	20	3.5	20	77	11	74	29	12	16	40	1.86
21954--21994	21	2.0	21	85	9	57	39	9	12	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32926--33052	52	2.4	52	94	0	218	27	16	18	37	1.93
32926--33074	52	2.9	52	89	2	192	29	16	18	35	1.93
33063--33087	13	1.9	13	100	0	50	36	16	16	32	1.90
33132--33217	32	2.7	32	90	0	145	36	16	13	33	1.88
33159--33215	13	3.9	13	74	24	51	31	17	15	35	1.92
38952--39022	27	2.6	27	95	0	124	22	42	19	15	1.89
42529--42592	25	2.5	25	77	10	67	20	23	23	32	1.98
48120--48196	20	3.9	19	80	8	91	42	14	12	29	1.83
49342--49843	155	3.3	155	77	6	551	38	19	16	25	1.92
49509--49814	144	2.1	144	81	4	341	38	20	16	24	1.92
50260--50301	20	2.0	20	86	9	57	57	2	0	40	1.12
50292--50332	4	10.2	4	84	10	57	21	0	0	78	0.76
50292--50332	20	2.0	20	95	0	73	21	0	0	78	0.76
51414--51468	20	2.8	20	91	0	92	34	12	12	40	1.82
55679--55704	13	2.0	13	100	0	52	30	15	15	38	1.88
55760--55856	20	4.8	20	94	2	160	27	18	13	40	1.88
55743--55856	40	2.8	40	89	5	176	28	16	14	41	1.87
55743--55856	60	1.9	60	85	7	160	28	16	14	41	1.87
58176--58319	51	2.8	51	80	2	146	33	24	9	33	1.87
58306--58377	28	2.6	29	88	4	103	23	31	18	26	1.97
58291--58566	108	2.6	106	84	6	351	26	24	15	34	1.95
58415--58485	28	2.6	26	80	10	81	22	30	19	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58443--58643	79	2.6	77	85	6	251	27	24	14	32	1.95
58256--58566	108	2.9	106	81	6	344	27	24	14	33	1.94
59765--59796	15	2.1	16	94	5	57	53	0	12	34	1.39
61139--61274	43	3.2	43	70	16	122	45	11	22	20	1.83
61294--61410	42	2.8	42	70	15	116	47	12	21	17	1.81
60967--61687	336	2.1	337	82	6	861	44	13	22	18	1.85
60967--62330	85	16.2	85	74	9	748	45	12	22	19	1.84
61007--62291	169	7.6	169	75	8	425	45	12	22	19	1.84
61206--62316	167	6.6	166	74	10	589	45	12	22	19	1.84
60973--62140	252	4.6	253	78	8	622	44	12	23	19	1.85
62191--62328	42	3.3	42	73	8	129	49	10	21	19	1.77
62413--62830	35	11.5	35	75	7	323	45	12	21	20	1.84
62552--62827	70	3.9	70	88	2	372	45	10	22	22	1.82
62837--63078	35	6.9	35	79	4	256	44	16	20	19	1.87
62715--62949	122	1.9	121	83	3	301	43	14	20	21	1.87
62645--63022	192	2.0	191	82	2	461	43	13	21	21	1.87
63160--63522	47	7.8	47	79	4	283	38	16	22	22	1.93
63170--63522	139	2.5	138	77	4	341	38	16	22	22	1.93
63160--63522	93	3.9	92	77	7	349	38	16	22	22	1.93
63160--63522	46	7.8	47	80	5	283	38	16	22	22	1.93
65433--65600	82	2.0	82	100	0	336	41	14	18	26	1.88
65882--65934	20	2.7	20	88	11	74	30	18	13	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65965--66016	19	2.7	20	87	3	70	34	17	15	32	1.91
65988--66049	33	1.9	33	90	3	99	40	17	16	25	1.90
67288--67313	13	2.0	13	100	0	52	30	15	15	38	1.88
67268--67331	32	2.0	33	90	3	103	28	14	15	42	1.86
69400--69442	20	2.1	20	86	4	59	9	25	44	20	1.81
76075--76138	32	2.0	33	87	3	94	28	12	15	43	1.83
83693--84084	200	2.0	199	97	0	739	26	20	20	31	1.97
84861--84913	19	2.7	20	88	2	72	33	18	15	32	1.92
84883--84946	33	2.0	32	87	3	92	37	18	17	26	1.93
89732--90329	155	3.9	155	80	4	607	39	19	17	24	1.92
89732--90350	310	2.0	308	80	3	690	39	19	17	24	1.92
92264--92668	159	2.5	164	82	7	443	49	8	11	30	1.69
95524--95549	2	13.0	2	100	0	52	50	0	0	50	1.00
99648--99687	19	2.1	19	100	0	80	27	25	5	42	1.75
103862--103894	11	2.8	12	86	9	50	0	84	9	6	0.76

Tables:   1

The End!