Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold42
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3911082
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Warning! 18191 characters in sequence are not A, C, G, or T
File 24 of 24
Found at i:3820399 original size:475 final size:476
Alignment explanation
Indices: 3818686--3823845 Score: 6394
Period size: 476 Copynumber: 10.9 Consensus size: 476
3818676 TTATATGGAT
* * * * ** *
3818686 CCCAATTCTTTTCAAGATTGAGCACCATAAATACAGTCTTCTCATTTGGATACA-CGATATTGAA
1 CCCAA-TCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATC-ATATTGAT
* * * * * * *
3818750 GTTTTGGTTTCACAAGAAATGCATTTTCAC-CTCCAATTTTTGTAAAGTCTAAGTTCATACCTCA
64 GCTTTGGTTTCGCAAGAAAAGCTTTTTC-CTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCA
* *
3818814 AATGAGACAAACATGGGTT-TAAGTAATGATCTTCATTCATTTTGGGATTAGGAACTATAAACAC
128 AATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACAC
*
3818878 ATTCTCCT-TATTAGGATAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
192 ATTCTCCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
3818942 TACTTTCCTTTAAATCAAAGTTCATACCATAAATAAGACAAGCATCGATTCTCGTAATAGTCTCC
256 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCC
* *
3819007 ATTCTTTTCAAGATTGGGAAGCGAAAACACA-TCCCTTCATTAGGATACAAGACATTGATGCTTT
321 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3819071 GGTGTCGCAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAC
386 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
3819136 GATAAACGTGAATACTCATACTAATC
451 GACAAACATGAATACTCATACTAATC
* * ** * * *
3819162 CCTATTCTTTTCAAAATTTGGCAGCATAAACATAGTCTTCTTC-TAGGGATACATCATATTGATG
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTC-TCATAAGGATACATCATATTGATG
* * * * *
3819226 CCTTGGCTTCGCAAGAAAGGCTTTCTCCTCACCAATTTTTGTAAAGTCTATGTTAATGCCTCAAA
65 CTTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* ** *
3819291 TTAGACAAACATGGATTCTAGTAATGATCTT--TAAATTTTGTGATTAGGCACTATAAACACATT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATT
* *** * *
3819354 CTCCTCTTTAGTATAAATGATACCAATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTGTT
195 CTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* *
3819419 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGTATCGATTCTCGTAACAATCTT-CATT
260 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TTCCATT
* * *
3819483 CTTTTCAAAATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACGTGACATTGATGCTTTGGG
324 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * ** * *
3819548 GTCGTAAGAAAAGTTTTTCTTTCCATTGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGAC
389 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * **
3819613 AAACCTGATTACTCATACCGATC
454 AAACATGAATACTCATACTAATC
* * * ** * * * *
3819636 CCCAATCTTTTCAGTATTGGGAACCATAAACATTGTCTTCTCATTTGAATACATGATATTGAAGT
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * * * ** * *
3819701 TTTGGTTTCGCAAGAAATGCATTTTTCC-CACCAAATTTTGGAAAGTCTAGGTTTGTTCCTTAAA
66 TTTGGTTTCGCAAGAAAAGC-TTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* * * * * *
3819765 TGAGAGAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTGGGAACTACAAACACATT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATT
** *
3819830 CTCCTAGTTAGGATAAATGATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTGCCCTATT
195 CTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * *
3819895 TTCCTTTAAATCAGAGTTCATACCTTAAATAAGACAAGCATCGACTCTTGTAACAGTTTCCATTC
260 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTC
* * * * *
3819960 TTTTCAAGATTGGGAAGGCAAAACACATTCCCTTTATTAGGATTCAAGACTTTGATGCTTTGGTG
325 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * * *
3820025 TCGCAAGAAAAGCTTTT-TTTCCTACCATTTTTGAAAGAATCAAAGTTTGTCTCTTAAATACGAT
390 TCGCAAGAAAAGCTTTTCTTTCC-ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
3820089 AAACATGAATACTTATTCTGATC
454 AAACATGAATACTCATACTAATC
* *
3820112 CCCAATCTTTTCAAGATTGGGCACCATAAA-ATAGTCTTCTTC-TAAGGATACATCATGTTGATG
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTC-TCATAAGGATACATCATATTGATG
* * * * ** * *
3820175 CCTTGGTTTTGCAAGAAAGGCATTTTCCTTGCCAATTTTTGTAAAGTCTATGTGCCTGCCTCAAA
65 CTTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* * **
3820240 TGAGACAAACATGGATTCTAGTAATGATCTTGATTCATTTTGTGAGTAGTTACTATAAACACATT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATT
* *
3820305 CTCCTCTTTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
195 CTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * * * *
3820370 TTCCTTTAAATCCAAGTTTATATCTTAAATAAGACAAGCATCGATTCTCATATCAATTTCCATTA
260 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTC
** * * * *
3820435 TTTTCTTGATTGGGAAGCTAAAACGCATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTG
325 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
3820500 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCGAAGTTTGTGTCTTAAATAAGACA
390 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
*
3820565 AAC-TAGAATACTCACACTAATC
455 AACAT-GAATACTCATACTAATC
* * *
3820587 CCCAATCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCCTAAGGATACATCATATTGCTGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* *
3820652 TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCTTGCCTTAAAT
66 TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAAT
* * * * *
3820717 GAGACAAACATGGATTCTAGTAATGATCTTGATTTATTTTGTGATTAGGCATTATAAACAAATTC
131 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTC
* * * * *
3820782 TCCTTTTTAGGATAATTAATATCGATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
196 TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * *
3820847 TCCTTTAAATCAAAGCTCATATCTTAAATAAGACAAGCATCGATTCTCGTATCAGTTTCCATTCT
261 TCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTCT
** * * *
3820912 TTTCTTGATTGGGAAGCTAAAACACATTCCCTTCATTAGGATACATGATATTGATGCTTAGGTGT
326 TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
* * * *
3820977 CGTAAGAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAA
391 CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
*
3821042 AC-TAGAATACTCACACTAATC
456 ACAT-GAATACTCATACTAATC
* * *
3821063 CCCAATCTTTTCAGGATTAGGCACCATAGACATAGTCTTCTCCTAAGGATACATCATATTGATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * *
3821128 TTTGGTTTTGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCTTGCCTCAAGT
66 TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAAT
* * * *
3821193 GAGACAAACATGGATTCTAGTAATGATCTTGATTTATTTTGTGATTAGGCATTATAAACACATTC
131 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTC
* * * * *
3821258 TCCTCTTTAGGATAATTAATATCGATGTTTTTCTTTTGCATGGAAATCTTTTTTTTG-CCTAATT
196 TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATT
** ** * * * * * *
3821322 TTTGTTTAAATCAAAGTTCATACCTTAAACCAGACATGCATTGATTCTTGTAAAAGTCTCCATTT
260 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTC
* *
3821387 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTTATTAGGATACATGACATTGATGGTTTGAG-
325 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG-GT
* ** **
3821451 GTCGTAAGAAAAGCTTTTCTTTCCTTCGTTTTTGATAGAATCAAAGTTTAACTCTTAAATAAGAC
389 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
3821516 AAACTTGAATACTCATAGTAATC
454 AAACATGAATACTCATACTAATC
* * * * *
3821539 CCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * * *
3821604 TTTGGTTTTGCAAGAAAAGCATTTTCAC-CTCCAATTTTTGTAAAGTCTAAGTTC--GCACTTCA
66 TTTGGTTTCGCAAGAAAAGCTTTTTC-CTCACCAATTTTTGTAAAGTCTATGTTCATGC-C-TCA
* * * * * *
3821666 AATGATACAAACATGGGTTTTCGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACA
128 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACA
* * * *
3821731 TTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATGGAATTCTTTTCTTTTTGCCT
193 TTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC--TTTGCCC
* * *
3821796 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGATAAGCATCGATTCTCATAAGAGTCTT-
256 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGT-TTC
* *
3821860 TATTCTTTTCAAGATTGGGAAGCCAAAACACATTTCCTTCATTAGGATACATGACATTGATGCTT
320 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * ** * * * *
3821925 TGGGGCCAAAAGAAAAGCTTTTCTTTCCGCCATTTTTAATAGAATCAAAGTGTGTCTCTTAAATA
385 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
*
3821990 AGACAAA-ATGAATACTCATACAAATC
450 AGACAAACATGAATACTCATACTAATC
* * * * *
3822016 CCCAATCTTTTCGGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATTATATTAATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * * * * * * * * * *
3822081 TTTGGATAT-GCAAGAAAGGCTTTTTTCTCACAAATTTTTGTAATGCCAAAGTTCGTACTTCAAA
66 TTTGG-TTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* * ** * * * * **
3822145 TGAGGCAAACATGGGTTCTAGTAACAATCTTTAATCATTTTGCGATTAGGAACTACAAATGCATT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATT
*** * *
3822210 CTCCTCACCAGGATAAATCATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATT
195 CTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
* * * * *
3822275 TTCCTTTAAATCAAAGTTCACACCTTAAATAAGATAAGTATCGATTCTCGTAACAGTCTCCATTA
260 TTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTC
* * *
3822340 TTTTCAAGATTGGGAAGCCAAAACACATTTCCTTCATTAGGATACAAGACATTGATGCTTTAGTG
325 TTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
* * *
3822405 TCGCAAGAAAAGCTTTTCTTTGCACCGTTTTTGATAGAATGAAAGTTTGTCTCTTAAATACGACA
390 TCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* * *
3822470 AACGTTAATACTCATACTGATC
455 AACATGAATACTCATACTAATC
** * *
3822492 CTTATTCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCTTAAGGATACATCATATTGATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* *
3822557 TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCTTGCCTTAAAT
66 TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAAT
* * * * *
3822622 GAGACAAGCATGGATTCTAGTAATGATCTTGATTTA-TTTGTGATTAGGCATTATAAACACATTC
131 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTC
* * * * *
3822686 TCCTCTTTAGGATAATTAATATCGATGTTTTTCTTTTACATGGAAAT-TTTT-TTTGCCCTATTT
196 TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * * *
3822749 T-CTTTAAAATCACAGTTCATACCTTAAACAAGACAAGCATTGATTCTCGTAATAGTCTCCATTC
261 TCCTTT-AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTC
* * * * * *
3822813 TTTTCAAGATTGGGAAG-TAAATACACATTCCATTCACTATGACACATGACATTGATGCTTTGGG
325 TTTTCAAGATTGGGAAGCCAAA-ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * *
3822877 GTTGAAAGAAAAACTTTTCTTTCCACTGTTTTTTAATTA-AATCAAAGTTTGTCTCTTAAATAAG
389 GTCGCAAGAAAAGCTTTTCTTTCCACCG-TTTTTGA-TAGAATCAAAGTTTGTCTCTTAAATAAG
* *
3822941 ATAAAAATGAATACTCATACTAATC
452 ACAAACATGAATACTCATACTAATC
* * * * *
3822966 CCCAATCTTTTTAGGATTAGGCCCCATAAACATGGTCTTCTCATTAGGATACATCATATTGATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * * * *
3823031 TTTGGTTACGCAAGAAAAGCTTTTTTCC-CACCAATTTTTGT-ATGTCTAAGTTCGTACCTCAAA
66 TTTGGTTTCGCAAGAAAAGC-TTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* * * * * **
3823094 TGAGACAAACATGGGTTCTAGTAAGGATCTTCATTCATTTTGGGATTGGGAACTACAAATGCATT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATT
* * * * * * * *
3823159 CTCCACATTGGGATAAATGATATTAACGATTTTCTTTTGCATGAAAAAT-TTTTCTTTACCATAT
195 CTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAAATCTTTTCTTTGCCCTAT
* *
3823223 TTTCCTTTAAATCAAAGATCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
259 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATT
* * * *
3823288 CTTTTCAAGATTGGGAAGCCGAAATACATTCCCTTCATTCGGATACAAGACATTGATGCTTTGGT
324 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* * * * * * * *
3823353 GTCGTAAGAAAAGCATTTCTTTCCACTGTTTTTGATTGATTCTAAGTTTGTCTCTTAAATACGAT
389 GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* *
3823418 AAACGTGAATACTCATACTGATC
454 AAACATGAATACTCATACTAATC
** * * * *
3823441 CCCTTTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGACACATCATACTGATGC
1 CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
* * *
3823506 CTTGGCTTT-GCAAGAAAGGC-TTTTCCTCACCAATATTTGTAAAGTCTATGTTCATGCCTCAAA
66 TTTGG-TTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAA
* * * *
3823569 CGCGACAAACATGGATTCTAGTAATGATCTTCAATCATTTTG-GAATTAGGAACTACAAACACAT
130 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTG-ATTAGGAACTATAAACACAT
* * *
3823633 TCTCCACATTAGGATAAATGATATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTAT
194 TCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
** * *
3823698 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGTGAAGCATCGATTTTCATAACAGTTTCCATT
259 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATT
** * * *
3823763 CTTTTCTTGATTAGGAAGCCAAAACACATGCCCTTCATTCGGATACATGACATTGATGCTTTGGT
324 CTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGT
* *
3823828 GTCTCAAGAAAGGCTTTT
389 GTCGCAAGAAAAGCTTTT
3823846 TCCCCACCAA
Statistics
Matches: 4045, Mismatches: 586, Indels: 107
0.85 0.12 0.02
Matches are distributed among these distances:
472 7 0.00
473 359 0.09
474 454 0.11
475 1169 0.29
476 1643 0.41
477 233 0.06
478 176 0.04
479 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (476 bp):
CCCAATCTTTTCAGGATTGGGCACCATAAACATAGTCTTCTCATAAGGATACATCATATTGATGC
TTTGGTTTCGCAAGAAAAGCTTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAAT
GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTATAAACACATTC
TCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTTTCCATTCT
TTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGT
CGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
ACATGAATACTCATACTAATC
Found at i:3820484 original size:159 final size:156
Alignment explanation
Indices: 3818859--3824051 Score: 712
Period size: 159 Copynumber: 32.8 Consensus size: 156
3818849 TTCATTTTGG
* * * * * *
3818859 GATTAGGAACTATAAACACATTCTCCTT-ATTAGGATAAATGACATTGATGATTTTCTTTTGCAT
1 GATTAGGAACTATAAACACATTCT-CTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * * *
3818923 GGAAATCTTTTCTTTGCCCTACTTTCCTTTAAATCAAAGTTCATACCATAAATAAGACAAGCATC
65 GAAAAGCTTTTCTTT-CCCTA-TTT-TTTTAAATCAAAGTTTATATCTTAAATAAGACAAACATC
* * * * **
3818988 GATTCTCGTAAT-AGTCTCCATTCTTTTCAA
127 GATTCTCAT-ATCAATTTCCATTATTTTCTT
* * * * * * *
3819018 GATTGGGAAGCGA-AAACACA-TCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* ** * * * * * *
3819081 AAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACGT-
65 GAAAAGCTTTTCTTTCC-CTATTTTT-TTA-AATCAAAGTTTATATCTTAAATAAGACAAACATC
* * * **
3819145 GAATACTCATA-CTAA-TCCCTATTCTTTTCAA
127 G-ATTCTCATATC-AATTTCC-ATTATTTTCTT
* * * * * * *
3819176 AATTTGGCAGC-ATAAACATAGTCTTCTTC--TAGGGATACATCATATTGATGCCTTGGC-TTCG
1 GATTAGG-AACTATAAACACATTC-TCTTCATTA-GGATACATGATATTGATG-CTTTGCTTTCG
* * * * * * * ** * *
3819237 CAAGAAAGGC-TTTCTCCTCACCAATTTTTGTAAAGTCTATGTTAATGCCTCAAATTAGACAAAC
62 CAAGAAAAGCTTTTCT-TTC-CCTATTTTTTTAAA-TCAAAGTTTATATCTTAAATAAGACAAAC
* * * * *
3819301 ATGGATTCT-AGTAAT-GATCTT-TA-AATTTT-GT
124 ATCGATTCTCA-T-ATCAAT-TTCCATTATTTTCTT
* * * * * *** * * * *
3819332 GATTAGGCACTATAAACACATTCTCCTCTTTAGTATAAATGATACCAATGATTTTCTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
* * * * * * **
3819397 GAAATCTTTTTTTTGCCCTGTTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGTATCG
66 AAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCG
* * * **
3819462 ATTCTCGTAACAATCTT-CATTCTTTTCAA
128 ATTCTCATATCAAT-TTCCATTATTTTCTT
* * * * * * *** *
3819491 AATTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACGTGACATTGATGCTTTGGGGTCGTAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * *
3819555 GAAAAGTTTTTCTTTCCATTGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCT-
65 GAAAAGCTTTTCTTTCC-CTATTTTTT-TA-AATCAAAGTTTATATCTTAAATAAGACAAACATC
* * ** * * *
3819619 GATTACTCATACCGATCCCCAATCTTTTC-A
127 GATT-CTCATATCAATTTCCATTATTTTCTT
* * * * * * * *
3819649 GTATTGGGAACCAT-AA-ACATTGTCTTCTCATTTGAATACATGATATTGAAGTTTTGGTTTCGC
1 G-ATTAGGAACTATAAACACATTCTC-T-TCATTAGGATACATGATATTGATGCTTTGCTTTCGC
* ** * * ** * * * * *
3819712 AAGAAATGCATTTT-TCCCACCAAATTTTGGAAAGTCTAGGTTTGT-TCCTTAAATGAGAGAAAC
63 AAGAAAAGC-TTTTCTTTC-CCTATTTTTTTAAA-TCAAAGTTTATAT-CTTAAATAAGACAAAC
* * * * **
3819775 GTGGGTTCT-AGTAAT-GATCTT-CATTCATTTT-GG
124 ATCGATTCTCA-T-ATCAAT-TTCCATT-ATTTTCTT
* * * * * * * * *
3819808 GATTGGGAACTACAAACACATTCTCCT-AGTTAGGATAAATGATATTGATGATTTTCTTTTGTAT
1 GATTAGGAACTATAAACACATTCTCTTCA-TTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * *
3819872 GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAGAGTTCATACCTTAAATAAGACAAGCATC
65 GAAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATC
* ** * * * **
3819937 GACTCTTGTAACAGTTTCCATTCTTTTCAA
127 GATTCTCATATCAATTTCCATTATTTTCTT
* * * * * * *
3819967 GATTGGGAAGGC-A-AAACACATTCCCTTTATTAGGATTCAAGACT-TTGATGCTTTGGTGTCGC
1 GATTAGGAA--CTATAAACACATTCTCTTCATTAGGATACATGA-TATTGATGCTTTGCTTTCGC
* ** * * * *
3820029 AAGAAAAGCTTTT-TTTCCTACCATTTTTGAAAGAATCAAAGTTTGTCTCTTAAATACGATAAAC
63 AAGAAAAGCTTTTCTTTCC--CTATTTTT-TTA-AATCAAAGTTTATATCTTAAATAAGACAAAC
* * * ** * * **
3820093 AT-GAATACTTAT-TCTGATCCCCAATCTTTTCAA
124 ATCG-ATTCTCATATC-AATTTCCATTATTTTCTT
* * * * * * * * * * *
3820126 GATTGGGCACCATAAA-ATAGTCTTCTTC-TAAGGATACATCATGTTGATGCCTTGGTTTTGCAA
1 GATTAGGAACTATAAACACATTC-TCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * * * *** ** * * *
3820189 GAAAGGCATTTTCCTTGCCAATTTTTGTAAAGTCTATGTGCCTGCCTCAAATGAGACAAACATGG
65 GAAAAGC-TTTTCTTTCCCTATTTTTTTAAA-TCAAAGTTTATATCTTAAATAAGACAAACATCG
* * *
3820254 ATTCT-AGTAAT-GATCTT-GATTCATTTT-GT
128 ATTCTCA-T-ATCAAT-TTCCATT-ATTTTCTT
* ** * * * * * * * *
3820283 GAGTAGTTACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTTCTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
* * *
3820348 AAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCCAAGTTTATATCTTAAATAAGACAAGCATCG
66 AAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCG
3820413 ATTCTCATATCAATTTCCATTATTTTCTT
128 ATTCTCATATCAATTTCCATTATTTTCTT
* * * *
3820442 GATTGGGAAGCTA-AAACGCATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTGTCGCAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * *
3820506 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCGAAGTTTGTGTCTTAAATAAGACAAAC-TA
65 GAAAAGCTTTTCTTTCC-CTATTTTT-TTA-AATCAAAGTTTATATCTTAAATAAGACAAACATC
* * ** * * **
3820570 GAATACTCACA-CTAATCCCCAATCTTTTCAG
127 G-ATTCTCATATC-AATTTCCATTATTTTCTT
* * * * * * * * *
3820601 GATTAGGCACCATAAACATAGTCT-TCTCCTAAGGATACATCATATTGCTGCTTTGGTTTCGCAA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * ** *
3820665 GAAAAGCTTTT-TCCTCACCAATTTTTGTAAAGTCTATGTTCT-TGCCTTAAATGAGACAAACAT
65 GAAAAGCTTTTCT-TTC-CCTATTTTTTTAAA-TCAAAGTT-TATATCTTAAATAAGACAAACAT
* * * *
3820728 GGATTCT-AGTAAT-GATCTT-GATTTATTTT-GT
126 CGATTCTCA-T-ATCAAT-TTCCA-TTATTTTCTT
* * * * * * * * *
3820759 GATTAGGCATTATAAACAAATTCTCCTT-TTTAGGATA-ATTAATATCGATGTTTTTCTTTTGCA
1 GATTAGGAACTATAAACACATTCT-CTTCATTAGGATACA-TGATATTGATGCTTTGCTTTCGCA
* * * * * *
3820822 TGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGCTCATATCTTAAATAAGACAAGCAT
64 AGAAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACAT
* * *
3820887 CGATTCTCGTATCAGTTTCCATTCTTTTCTT
126 CGATTCTCATATCAATTTCCATTATTTTCTT
* * * * * *
3820918 GATTGGGAAGCTA-AAACACATTCCCTTCATTAGGATACATGATATTGATGCTTAGGTGTCGTAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * *
3820982 GAAATGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTGTCTTAAATAAGACAAAC-TA
65 GAAAAGCTTTTCTTTCC-CTATTTTT-TTA-AATCAAAGTTTATATCTTAAATAAGACAAACATC
* * ** * * **
3821046 GAATACTCACA-CTAATCCCCAATCTTTTCAG
127 G-ATTCTCATATC-AATTTCCATTATTTTCTT
* * * * * * * * * *
3821077 GATTAGGCACCATAGACATAGTCT-TCTCCTAAGGATACATCATATTGATGCTTTGGTTTTGCAA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * ** * * *
3821141 GAAAAGCTTTT-TCCTCACCAATTTTTGTAAAGTCTATGTTCT-TGCCTCAAGTGAGACAAACAT
65 GAAAAGCTTTTCT-TTC-CCTATTTTTTTAAA-TCAAAGTT-TATATCTTAAATAAGACAAACAT
* * * *
3821204 GGATTCT-AGTAAT-GATCTT-GATTTATTTT-GT
126 CGATTCTCA-T-ATCAAT-TTCCA-TTATTTTCTT
* * * * * * * * * *
3821235 GATTAGGCATTATAAACACATTCTCCTCTTTAGGATA-ATTAATATCGATGTTTTTCTTTTGCAT
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACA-TGATATTGATGCTTTGCTTTCGCAA
* * * * * * ** ** *
3821299 GGAAATCTTTTTTTTGCCTAATTTTTGTTTAAATCAAAGTTCATACCTTAAACCAGACATGCATT
65 GAAAAGCTTTTCTTTCCCT-A-TTTT-TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATC
** * * * **
3821364 GATTCTTGTA-AAAGTCTCCATTTTTTTCAA
127 GATTCTCATATCAA-TTTCCATTATTTTCTT
* * * * * * *** *
3821394 GATTGGGAAGCCA-AAACACATTCCCTTTATTAGGATACATGACATTGATGGTTTGAGGTCGTAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * *
3821458 GAAAAGCTTTTCTTTCCTTCGTTTTTGATAGAATCAAAGTTTA-ACTCTTAAATAAGACAAAC-T
65 GAAAAGCTTTTCTTTCCCT-ATTTTT-TTA-AATCAAAGTTTATA-TCTTAAATAAGACAAACAT
* * ** * *
3821521 TGAATACTCATAGT-AATCCCCATTCTTTT-TAG
126 CG-ATTCTCATA-TCAATTTCCATTATTTTCT-T
* * * * * * *
3821553 GATTTGGCACCATAAACATAGTCT-TCTCATTAGGATACATGATATTGATGCTTTGGTTTTGCAA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
** * * * *** * *
3821617 GAAAAGCATTTTC-ACCTCCAATTTTTGTAAAGTCTAAGTTCGCA-CTTCAAATGATACAAACAT
65 GAAAAGC-TTTTCTTTC-CCTATTTTTTTAAA-TCAAAGTTTATATCTT-AAATAAGACAAACAT
* * * * * **
3821680 GGGTTTTCGTAAT-GATCTT-CATTCATTTT-GG
126 CGATTCTCAT-ATCAAT-TTCCATT-ATTTTCTT
* * * * * * * *
3821711 GATTAGGAACTACAAACACATTCTCCTCATTAAGATAAATGATATTGATGATTTTCTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
* ** * * * * *
3821776 GAATTCTTTTCTTTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGATAAGCAT
66 AAAAGCTTTTC--TTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACAT
** * * * **
3821841 CGATTCTCATAAGAGTCTT-TATTCTTTTCAA
126 CGATTCTCATATCAAT-TTCCATTATTTTCTT
* * * **** **
3821872 GATTGGGAAGCCA-AAACACATT-TCCTTCATTAGGATACATGACATTGATGCTTTGGGGCCAAA
1 GATTAGGAA-CTATAAACACATTCT-CTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCA
* * * * *
3821935 AGAAAAGCTTTTCTTTCCGCCATTTTTAATAGAATCAAAGTGTGTCTCTTAAATAAGACAAA-AT
64 AGAAAAGCTTTTCTTTCC-CTATTTTT-TTA-AATCAAAGTTTATATCTTAAATAAGACAAACAT
* ** * * **
3821999 -GAATACTCATA-CAAATCCCCAATCTTTTCGG
126 CG-ATTCTCATATC-AATTTCCATTATTTTCTT
* * * * * * * *
3822030 GATTAGGCACCATAAACATAGTCT-TCTCATTAGGATACATTATATTAATGCTTTGGATAT-GCA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTT-GCTTTCGCA
* ** * ** * *
3822093 AGAAAGGCTTTT-TTCTCACAAATTTTTGT-AATGCCAAAGTTCGTA-CTTCAAATGAGGCAAAC
64 AGAAAAGCTTTTCTT-TC-CCTATTTTTTTAAAT--CAAAGTTTATATCTT-AAATAAGACAAAC
* * * ** *
3822155 ATGGGTTCT-AGTAACAATCTTTAATCATTTTGC--
124 ATCGATTCTCA-TATCAAT-TTCCATTATTTT-CTT
* ** * ** * * * * * *
3822188 GATTAGGAACTACAAATGCATTCTCCTCACCAGGATAAATCATATTGATGATTTTCTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
* * * * * * **
3822253 GAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCACACCTTAAATAAGATAAGTATCG
66 AAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCG
* * * * **
3822318 ATTCTCGTAACAGTCTCCATTATTTTCAA
128 ATTCTCATATCAATTTCCATTATTTTCTT
* * * * *
3822347 GATTGGGAAGCCA-AAACACATT-TCCTTCATTAGGATACAAGACATTGATGCTTTAG-TGTCGC
1 GATTAGGAA-CTATAAACACATTCT-CTTCATTAGGATACATGATATTGATGCTTT-GCTTTCGC
** * * * *
3822409 AAGAAAAGCTTTTCTTTGCACCGT-TTTTGATAGAATGAAAGTTTGTCTCTTAAATACGACAAAC
63 AAGAAAAGCTTTTCTTT-C-CC-TATTTTTTTA-AATCAAAGTTTATATCTTAAATAAGACAAAC
* ** * * * **
3822473 GTTAATACTCATA-C--TGATCCTTATTCTTTTCAG
124 ATCGATTCTCATATCAAT-TTCC--ATTATTTTCTT
* * * * * * *
3822506 GATTGGGCACCATAAACATAGTCT-TCTC-TTAAGGATACATCATATTGATGCTTTGGTTTCGCA
1 GATTAGGAACTATAAACACATTCTCT-TCATT-AGGATACATGATATTGATGCTTTGCTTTCGCA
* * * * * ** * *
3822569 AGAAAAGCTTTT-TCCTCACCAATTTTTGTAAAGTCTATGTTCT-TGCCTTAAATGAGACAAGCA
64 AGAAAAGCTTTTCT-TTC-CCTATTTTTTTAAA-TCAAAGTT-TATATCTTAAATAAGACAAACA
* * * *
3822632 TGGATTCT-AGTAAT-GATCTT-GATT-TATTT-GT
125 TCGATTCTCA-T-ATCAAT-TTCCATTAT-TTTCTT
* * * * * * * * ** *
3822663 GATTAGGCATTATAAACACATTCTCCTCTTTAGGATA-ATTAATATCGATGTTTTTCTTTTACAT
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACA-TGATATTGATGCTTTGCTTTCGCAA
* * * * * * * *
3822727 GGAAA--TTTTTTTTGCCCTATTTTCTTTAAAATCACAGTTCATACCTTAAACAAGACAAGCATT
65 GAAAAGCTTTTCTTT-CCCTATTTT-TTT-AAATCAAAGTTTATATCTTAAATAAGACAAACATC
* * * * **
3822790 GATTCTCGTAAT-AGTCTCCATTCTTTTCAA
127 GATTCTCAT-ATCAATTTCCATTATTTTCTT
* * * * * * ** *
3822820 GATTGGGAAGTA-AATACACATTC-CATTCACTATGACACATGACATTGATGCTTTGGGGTT-GA
1 GATTAGGAACTATAA-ACACATTCTC-TTCATTAGGATACATGATATTGATGCTTT-GCTTTCGC
* * * * * *
3822882 AAGAAAAACTTTTCTTTCCACTGTTTTTTAATTAAATCAAAGTTTGTCTCTTAAATAAGATAAAA
63 AAGAAAAGCTTTTCTTTCC-CT-ATTTTT--TTAAATCAAAGTTTATATCTTAAATAAGACAAAC
* ** * * *
3822947 AT-GAATACTCATA-CTAATCCCCAATCTTTT-TAG
124 ATCG-ATTCTCATATC-AATTTCCATTATTTTCT-T
** * *** * * *
3822980 GATTAGGCCCCATAAACATGGTCT-TCTCATTAGGATACATCATATTGATGCTTTGGTTACGCAA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * ** * ** * * * *
3823044 GAAAAGCTTTT-TTCCCACCAATTTTTGTATGTCTAAGTTCGTACCTCAAATGAGACAAACATGG
65 GAAAAGCTTTTCTT-TC-CCTATTTTTTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCG
* *** **
3823108 GTTCT-AGTAAGGATCTT-CATTCATTTT-GG
128 ATTCTCA-TATCAAT-TTCCATT-ATTTTCTT
* * ** ** * * * * * * * *
3823137 GATTGGGAACTACAAATGCATTCTCCACATTGGGATAAATGATATTAACGATTTTCTTTTGCATG
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
** * * * * *
3823202 AAAAATTTTTCTTTACCATATTTTCCTTTAAATCAAAGATCATACCTTAAATAAGACAAGCATCG
66 AAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCG
* * * * * **
3823267 ATTCTCGTAACAGTCTCCATTCTTTTCAA
128 ATTCTCATATCAATTTCCATTATTTTCTT
* ** * * * * * * * *
3823296 GATTGGGAAGC-CGAAATACATTCCCTTCATTCGGATACAAGACATTGATGCTTTGGTGTCGTAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * * * * * * *
3823360 GAAAAGCATTTCTTTCCACTGTTTTTGATTGATTCTAAGTTTGTCTCTTAAATACGATAAACGT-
65 GAAAAGCTTTTCTTTCC-CTATTTTT--TTAAATCAAAGTTTATATCTTAAATAAGACAAACATC
* * ** * * **
3823424 GAATACTCATA-CTGATCCCCTTTCTTTTCAA
127 G-ATTCTCATATC-AATTTCCATTATTTTCTT
* * * * * * * * * * *
3823455 GATTGGGCACCATAAACATAGTCT-TCTCCTAAGGACACATCATACTGATGCCTTGGCTTT-GCA
1 GATTAGGAACTATAAACACATTCTCT-TCATTAGGATACATGATATTGATG-CTTTGCTTTCGCA
* * * * * * * * ** * *** *
3823518 AGAAAGGCTTTTC-CTCACCAATATTTGTAAAGTCTATGTTCATGCCTCAAACGCGACAAACATG
64 AGAAAAGCTTTTCTTTC-CCTATTTTTTTAAA-TCAAAGTTTATATCTTAAATAAGACAAACATC
* * * *
3823582 GATTCT-AGTAAT-GATCTTCAATCA-TTT-TG
127 GATTCTCA-T-ATCAAT-TTCCATTATTTTCTT
* ** * * * ** *
3823611 GAATTAGGAACTACAAACACATTCTCCACATTAGGATAAATGATATTGATGATTTTCTTTTTCAT
1 G-ATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* * * * ** *
3823676 GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGTGAAGCATC
65 GAAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACAAACATC
* * * *
3823741 GATTTTCATAACAGTTTCCATTCTTTTCTT
127 GATTCTCATATCAATTTCCATTATTTTCTT
* * * * * * * *
3823771 GATTAGGAAGCCA-AAACACATGCCCTTCATTCGGATACATGACATTGATGCTTTGGTGTCTCAA
1 GATTAGGAA-CTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAA
* ** * * * * * * * * *
3823835 GAAAGGCTTTT-TCCCCACCAATTTTTGTAAAGTCTATGTTCATGA-CTCAAATGAGATAAACGT
65 GAAAAGCTTTTCT-TTC-CCTATTTTTTTAAA-TCAAAGTTTAT-ATCTTAAATAAGACAAACAT
* * * *
3823898 GGATTCT-AGTAGT-GATCTT-GATTAATTTT-GT
126 CGATTCTCA-TA-TCAAT-TTCCATT-ATTTTCTT
* * * * * * * * *
3823929 GATTAGGCACAATAAACACATTCTCCTCTTTAGGATA-ATTGATTTTGATGTTTTTCTTTTGCAT
1 GATTAGGAACTATAAACACATTCTCTTCATTAGGATACA-TGATATTGATGCTTTGCTTTCGCAA
* * * *
3823993 GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
65 GAAAAGCTTTTCTTT-CCCTATTTT--TTTAAATCAAAGTTTATATCTTAAATAAGACA
3824052 TGCATTGATT
Statistics
Matches: 3512, Mismatches: 1184, Indels: 676
0.65 0.22 0.13
Matches are distributed among these distances:
155 24 0.01
156 111 0.03
157 471 0.13
158 1029 0.29
159 1552 0.44
160 217 0.06
161 98 0.03
162 10 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
GATTAGGAACTATAAACACATTCTCTTCATTAGGATACATGATATTGATGCTTTGCTTTCGCAAG
AAAAGCTTTTCTTTCCCTATTTTTTTAAATCAAAGTTTATATCTTAAATAAGACAAACATCGATT
CTCATATCAATTTCCATTATTTTCTT
Found at i:3829056 original size:12 final size:11
Alignment explanation
Indices: 3829039--3829144 Score: 75
Period size: 12 Copynumber: 9.9 Consensus size: 11
3829029 CCATCTTCTT
3829039 CTCCTATCATCC
1 CTCCTATC-TCC
3829051 CTCCTATCT--
1 CTCCTATCTCC
*
3829060 CTACTATCT--
1 CTCCTATCTCC
*
3829069 CTACTATCTCTC
1 CTCCTATCTC-C
3829081 CTCCTATCATCC
1 CTCCTATC-TCC
3829093 CTCCTATCT--
1 CTCCTATCTCC
*
3829102 CTACTATCT--
1 CTCCTATCTCC
3829111 CTCCTATCTCTC
1 CTCCTATCTC-C
3829123 CTCCTATCATCC
1 CTCCTATC-TCC
*
3829135 CTCATATCTC
1 CTCCTATCTC
3829145 TTATTTCTCT
Statistics
Matches: 81, Mismatches: 5, Indels: 17
0.79 0.05 0.17
Matches are distributed among these distances:
9 33 0.41
11 4 0.05
12 40 0.49
13 4 0.05
ACGTcount: A:0.16, C:0.44, G:0.00, T:0.40
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:3829122 original size:9 final size:9
Alignment explanation
Indices: 3829051--3829124 Score: 73
Period size: 9 Copynumber: 8.6 Consensus size: 9
3829041 CCTATCATCC
3829051 CTCCTATCT
1 CTCCTATCT
*
3829060 CTACTATCT
1 CTCCTATCT
*
3829069 CTACTATCT
1 CTCCTATCT
*
3829078 CTCCT-CCT
1 CTCCTATCT
* *
3829086 AT-C-ATCC
1 CTCCTATCT
3829093 CTCCTATCT
1 CTCCTATCT
*
3829102 CTACTATCT
1 CTCCTATCT
3829111 CTCCTATCT
1 CTCCTATCT
3829120 CTCCT
1 CTCCT
3829125 CCTATCATCC
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 45 0.87
ACGTcount: A:0.15, C:0.43, G:0.00, T:0.42
Consensus pattern (9 bp):
CTCCTATCT
Found at i:3829154 original size:42 final size:42
Alignment explanation
Indices: 3829039--3829145 Score: 196
Period size: 42 Copynumber: 2.5 Consensus size: 42
3829029 CCATCTTCTT
3829039 CTCCTATCATCCCTCCTATCTCTACTATCTCTACTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTACTATCTCTC
*
3829081 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTACTATCTCTC
*
3829123 CTCCTATCATCCCTCATATCTCT
1 CTCCTATCATCCCTCCTATCTCT
3829146 TATTTCTCTT
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.16, C:0.44, G:0.00, T:0.40
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTATCTCTACTATCTCTACTATCTCTC
Found at i:3832298 original size:476 final size:472
Alignment explanation
Indices: 3830749--3834064 Score: 3773
Period size: 475 Copynumber: 7.0 Consensus size: 472
3830739 GTTTTCATCA
* *
3830749 TCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* * * * *
3830814 GC-TTGCTGTCGCAAGAAAAGCTTTTCTTTCTATCATTTTTGATAGAATCAAAGTTTATCTCTTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
3830878 AATAAGACAAACCTGAATACTCATACTAATCGCCATTCTTTTCAGGATTTGGCACCGTAAACATA
131 AATAAGACAAA--TGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * * * * * *
3830943 GTCTTCTCATTAGGATACATGATATCGATGCCTTGGTTTCGCAAGAAATGCATTTTCACCTCTAA
194 GTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTC-CCACCAA
* * * * * *
3831008 TTTTTTTAAAGTCTAACTTCGTATCTCAAATCAGACAAACATGGATTCTAGCAATGATCGTCATT
258 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * ** * *
3831073 CATTATGGGATTAGAAACTACAAACACATTCTCCT-TATTAGGATAAAAGATATTGATAGTTTTC
323 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCT-TTAGGATAAATGATATTGATA-TTTTC
* *
3831137 TTTTGCGTGGAAATATTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGA
386 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGA
* * *
3831202 CAAGCATTGATTCTCATAGCAG
451 CAAGCATCGATTCTCGTAACAG
* *
3831224 TCTCCATTCTTTTCAAGATTGGAAAGCCAAAACACATTCCCTTCCTTAGGATACAAGACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
*
3831289 GCTTTGGTGGT-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAATA-TTTTTCTCT
66 GCTTTGGT-GTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAA-AGTTTGTCTCT
* * *
3831352 TAAATACGACAAATGTGAATGCTCATACCGATCCCTATCCCCATTCTTTTCAAGATTGGGCACCA
129 TAAATAAGACAAA--TGAATACTCATA-C--T---GATCCCCATTCTTTTCAAGATTGGGCACCA
** * * **
3831417 TAAATGTAGTCTTCTCCTAAAAATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTC
186 TAAACATAGTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTC
* * * * *
3831482 CTCACCAATTTTTGTAAAGTCTATGTTCATGCCACAAATGAGACAAACATAGATTCTAGTAATGA
251 C-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGA
* *
3831547 TCTTCATTCATTTTGTGATTAGGCACTATAAACAGAATC-CCAT-TTTAGGATAAATGATATTGA
315 TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCC-TCTTTAGGATAAATGATATTGA
*
3831610 TGATTTTCTATTATG--TGGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
379 T-ATTTTCT-TT-TGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
3831673 GTAAATAAGTCAAGCATCGATTCTCGAAACAG
441 TTAAATAAGACAAGCATCGATTCTCGTAACAG
* ** * ** ** *
3831705 TCTCCATTGTTTTCTTGATTGGGAAGCCAAAAGACATTCTTTTTTTTAGGATACATGACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* *
3831770 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTATTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * * *
3831835 CAA-AAGACAAACTCAAATACTCATACTAATCCCCAATGTTTTCAGGATTTGGCACCATAAACAT
131 -AATAAGACAAA-T-GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACAT
* * * * *
3831899 AGTCTTCTCATTAGGAGACATTATATTGATGCTTTGGTTTCGCAAGAAATGCGTTTTTCCCACCA
193 AGTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCA
* *
3831964 ATTTTTGTAAAGTCTAAGTTTGTTCCTCAAATTG-GACAAACATGGATTCTAGTAATGATCTTCA
257 ATTTTTGTAAAGTCTAAGTTCGTACCTCAAA-TGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
3832028 ATCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGAACAAATGATATTAGCA-ATTT
321 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATT-G-ATATTT
* * *
3832092 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAATTCATGCCTTAAATAA
384 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAA
* * * * *
3832157 GAGAAGCGTTGATTCTTGTAACGG
449 GACAAGCATCGATTCTCGTAACAG
* *
3832181 TCTCCATTCTTTTCAAGATCGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTAAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* * * *
3832246 GCTTTGGTGTCGCAAGAGAAGCTATTCTTTCCCCCGCTTTTGATAGAATCAAAGTTTGTCTCTTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
3832311 AATATGACAAATATGAATGCTAATACTGATCCCCATCCTTTTCAAGATTGAGCACCATAAACATA
131 AATAAGAC-AA-ATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * * * *
3832376 GCCTTCTCCTAACGATAAATCATATTGATGCCTTGGTTTTGCAACG--A-------T---A--AA
194 GTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAA-GAAAGGCTTTTTCCCACCAA
** * * *
3832427 -TCATGT----TC--A--T-G--CCTCAAATAAGACAAACATGGATTCTAGTAATTATTTTCATT
258 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * *
3832480 CATTTTGTGATTAGGCACTATAAACACATTCGCCTCTTTAGGATAAATGATACTAATGATTTTCT
323 CATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGAT-ATTTTCT
* ** *
3832545 TTTGCCTGGAAATCTTTTCTTTGCTATATTATCCTTTAAATCAAAGTTCATACCTTAAATAAGAC
387 TTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGAC
* * * *
3832610 AAGCCTCAATTCCCGTAA-TG
452 AAGCATCGATTCTCGTAACAG
* * * * *
3832630 ATCTCCATTCTTTTCAAGATTGGGAAGACAATACACATTCCTTTCATTAGGATACATGACATTAA
1 -TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGA
* * ** * * * **
3832695 TGCTTTGGGGCCAAAAGAAAAGCTTTTATTTCCACCGGTTTTAATAGAATCAAAGTTTACCTCTT
65 TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTT
* ** * ** *
3832760 AGATAAGACAAAAATGAATACTCATACT--T--AGACTC-TTT-GGGATTAGGCACCATAAACAT
130 AAATAAGAC--AAATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACAT
* * * ***
3832819 AGTCTTCTCATGAGGATACCTTATATTGATAATTTGGTTTTGCAAGAAAGGCTTTTTTCCCACCA
193 AGTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCA
* * *
3832884 ATTTTTGTAATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAACGATCTTCAT
257 ATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAT
* * * * *
3832949 TCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTATGATAAATGATATTGATAATTTTC
322 TCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGAT-ATTTTC
** * * *
3833014 TTTTGCCCGGAAATCTTTTCTTTGCCTTATTTTCTTTTAAATCAAAGTTCATAGCTTAAATAAGA
386 TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGA
* * *
3833079 CAAGCATTGATTCTCATAATAG
451 CAAGCATCGATTCTCGTAACAG
* *
3833101 TCTCCATTCTTTTCAAGATTGGGAGGCCAAAACACATTCCCTTCATTAGGATACAAGACACTGAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* *
3833166 GCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
3833231 AATACGACAAACGTGAATACTTATACTGATCCCCATTATTTTCAAGATTGGGCACCATAAACATG
131 AATAAGACAAA--TGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * * * * *
3833296 GTCTTCTCATTAGGATATATGATATCGATGCTTTGGTTTTGCAAGAAATGCATTTTTCCTACCAA
194 GTCTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCAA
* * * *
3833361 TTTTTGTAAAGTCTAAGTTCATACCTCAAACGAGTCAAACATGGGTTCTAGTGAA-GATCTTCAT
258 TTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGT-AATGATCTTCAT
* * * * * * * *
3833425 TC-TTTATTTGATTATGAATTACAAA-GCATTCTCTTCATTAGGATAAATGATATTGATGATTTT
322 TCATTT-TGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGAT-ATTTT
**
3833488 CTTTTGCATGGAAATCTTTTCTTTGCTTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
385 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
*
3833553 AC-AGCCATCGATTCTCATAACAG
450 ACAAG-CATCGATTCTCGTAACAG
* * * *
3833576 TCTCCAATCTTTTCAAGACTGGGAGGCCAAAACACATTCCTTTCATTAGGATACAAGACATTGAT
1 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* ** * * * * *
3833641 GCTTTGGGGTCATAAGAAAAGCTTTTCTTTCTACCATTTTTGTTAGAATCAATGTTTGTCTCCTA
66 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
3833706 AATACGACAAATGTGAATACTAATACTGATCTCCATTCTTTTCAAGATTGGGCGCCATAAACATA
131 AATAAGACAAA--TGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * * * *** *
3833771 TTATTCTCTTTATGG-TACATCATATTGAGGCCTTGGTTTCATAAG-AAGGCTTTTTTCTCACCA
194 GTCTTCTCATTA-GGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGC-TTTTTCCCACCA
* *
3833834 ATTTTTGTAAAGTCTATGTTC-AAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
257 ATTTTTGTAAAGTCTAAGTTCGTA-CCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCA
* * *
3833898 TTCATTTTCTGATTAGGCACTATAAACACATTCTTCTCTTTAGGATAAATGATACTGATGATTTT
321 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGAT-ATTTT
*
3833963 CTTTTGCATGGAAATCGTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
385 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
*
3834028 ATAAGCATCGATTCTCGTAACAG
450 ACAAGCATCGATTCTCGTAACAG
3834051 TCTCCATTCTTTTC
1 TCTCCATTCTTTTC
3834065 TTCCCATCAT
Statistics
Matches: 2404, Mismatches: 357, Indels: 160
0.82 0.12 0.05
Matches are distributed among these distances:
443 1 0.00
444 52 0.02
445 4 0.00
446 2 0.00
448 2 0.00
449 2 0.00
450 295 0.12
451 3 0.00
452 1 0.00
453 2 0.00
455 1 0.00
456 1 0.00
457 2 0.00
458 2 0.00
459 4 0.00
461 4 0.00
462 2 0.00
463 2 0.00
464 1 0.00
465 1 0.00
467 2 0.00
468 4 0.00
470 296 0.12
471 1 0.00
472 1 0.00
473 3 0.00
474 91 0.04
475 685 0.28
476 519 0.22
477 11 0.00
478 3 0.00
479 1 0.00
480 5 0.00
481 228 0.09
482 168 0.07
483 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (472 bp):
TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
AATAAGACAAATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGT
CTTCTCATTAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTCCCACCAATTT
TTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
TTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATATTGATATTTTCTTTTG
CATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
ATCGATTCTCGTAACAG
Found at i:3834876 original size:872 final size:872
Alignment explanation
Indices: 3833187--3834926 Score: 2388
Period size: 872 Copynumber: 2.0 Consensus size: 872
3833177 GCAAGAAAAG
* * * * *
3833187 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATACGACAAACGTGAATACT
1 CTTTTCTTCCCACCATTTTTGATAGAATCAAAGTTCGTCACTTAAATAAGACAAACCTGAATACT
* * * * *
3833252 TATACTGATCCCCATTATTTTCAAGATTGGGCACCATAAACATGGTCTTCTCATTAGGATATATG
66 CATACTAATCCCCATTATTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACACG
* *
3833317 ATATCGATGCTTTGGTTTTGCAAGAAATGCATTTTTCCTACCAATTTTTGTAAAGTCTAAGTTCA
131 ATATCGATGCTTTGGTTTTGCAAGAAATGCAGTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
* * * *
3833382 TACCTCAAACGAGTCAAACATGGGTTCTAGTGAAGATCTTCATTCTTTATTTGATTATGAATTAC
196 TACCTCAAACGAGACAAACATGGGTTCTAGTGAAGATCTTCATTCTTTATATGATTAGGAACTAC
* * *
3833447 AAAGCATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT
261 AAACCATTCTCTTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
**
3833512 GCTTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAGCCATCGATTCTCATAACAGT
326 GCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAGCCATCGATTCTCATAACAGT
* *
3833577 CTCCAATCTTTTCAAGACTGGGAGGCCAAAACACATTCCTTTCATTAGGATACAAGACATTGATG
391 CTCCAATCTTTTCAAGACTGGGAAGCCAAAACACATTCCTTTCACTAGGATACAAGACATTGATG
* *
3833642 CTTTGGGGTCATAAGAAAAGCTTTTCTTTCTACCATTTTTGTTAGAATCAATGTTTGTCTCCTAA
456 CTTTGGGGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGTTAGAATCAAAGTTTGTCTCCTAA
* ** * * * * *
3833707 ATACGACAAATGTGAATACTAATACTGATCTCCATTCTTTTCAAGATTGGGCGCCATAAACATAT
521 ATACGAAAAACCTGAATACTAATACTAATCCCCATTCTTTTCAAGATTGGGCACCATAAACACAG
* * * * * * * * *
3833772 TATTCTCTTTATGGTACATCATATTGAGGCCTTGGTTTCATAAGAAGGCTTTTTTCTCACCAATT
586 TATTCTCATGAAGATAAATCATAATGAGGCCTTCGTTTCACAAGAAGGCTTTTTTCCCACCAATT
* *
3833837 TTTGTAAAGTCTATGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
651 CTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * *
3833902 TTTTCTGATTAGGCACTATAAACACATTCTTCTCTTTAGGATAAATGATACTGATGATTTTCTTT
716 TTTTATGATTAGGCACTATAAACACACTCTCCTCTTTAGGATAAATGATACTGATGATTTTCTTT
*
3833967 TGCATGGAAATCGTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGATAA
781 TGCATGGAAATCGTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA
3834032 GCATCGATTCTCGTAACAGTCTCCATT
846 GCATCGATTCTCGTAACAGTCTCCATT
* * *
3834059 CTTTTCTTCCCATCATTTTTGATTGAATCAAAGTTTC-TCACTTAAATAAGATAAACCTGAATAC
1 CTTTTCTTCCCACCATTTTTGATAGAATCAAAG-TTCGTCACTTAAATAAGACAAACCTGAATAC
* * * * *
3834123 TCATATTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACAC
65 TCATACTAATCCCCATTATTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACAC
* * *
3834188 GATATTGATGCTTTGGTTTTGCAAGAAATGC-GTTTTCCCACTAATTTTTGTAAAGTCTATGTTC
130 GATATCGATGCTTTGGTTTTGCAAGAAATGCAGTTTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * *
3834252 ATACCTCAAATGAGACAAACATGGGTTCTAGT-AATTATCTTCATTCATTT-TATGATTAGGTAC
195 ATACCTCAAACGAGACAAACATGGGTTCTAGTGAA-GATCTTCATTC-TTTATATGATTAGGAAC
* *
3834315 TATAAACCCATTCTCCTT-TTTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATT
258 TACAAA-CCATTCT-CTTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATT
* ** * **
3834379 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAG-TGTTGATTCTTGT
321 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGAC-AGCCATCGATTCTCAT
* * * ** * * *
3834443 ACCAGTCTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCCTTTTACTAGGATACATGACA
385 AACAGTCTCCAATCTTTTCAAGACTGGGAAGCCAAAACACATTCCTTTCACTAGGATACAAGACA
* *
3834508 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCT-CCGTTTTT-TATAGAATCAAAGTTTG
450 TTGATGCTTTGGGGTCACAAGAAAAGCTTTTCTTT-CTACCATTTTTGT-TAGAATCAAAGTTTG
* * *
3834571 TCTCTTACAA-A-GAAAAACCTGAATACTCATACTAATCCCCATTCTTTTCAAGATTTGGCACCA
513 TCTCCTA-AATACGAAAAACCTGAATACTAATACTAATCCCCATTCTTTTCAAGATTGGGCACCA
* * * ** *
3834634 TAAACACAGTCTTCTCATGAAGATAAATGATAATGATGTTTTCGTTTCACAAGAAAGGTTTTTTT
577 TAAACACAGTATTCTCATGAAGATAAATCATAATGAGGCCTTCGTTTCACAAG-AAGGCTTTTTT
** *
3834699 CCCACCAATTCTTGTAAAGTCTAAGTTCCTGCCTTAAATGAGACAAACATGGATTCTAGTAATGA
641 CCCACCAATTCTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGA
* * * *
3834764 TCTTTATTCATTTTATGATTCGGCAGTATAAACACACTCTCCTTTTTAGGATAAATGATA-TAGA
706 TCTTCATTCATTTTATGATTAGGCACTATAAACACACTCTCCTCTTTAGGATAAATGATACT-GA
* *
3834828 TGATTTAT-TTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTTAAATCAAAGTTCATACCT
770 TGATTT-TCTTTTGCATGGAAATCGTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCT
* *
3834892 TAAATAAGACGAGCGTCGATTCTCGTAACAGTCTC
834 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
3834927 GATTTGTTTC
Statistics
Matches: 756, Mismatches: 100, Indels: 24
0.86 0.11 0.03
Matches are distributed among these distances:
870 2 0.00
871 167 0.22
872 574 0.76
873 13 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (872 bp):
CTTTTCTTCCCACCATTTTTGATAGAATCAAAGTTCGTCACTTAAATAAGACAAACCTGAATACT
CATACTAATCCCCATTATTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACACG
ATATCGATGCTTTGGTTTTGCAAGAAATGCAGTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCA
TACCTCAAACGAGACAAACATGGGTTCTAGTGAAGATCTTCATTCTTTATATGATTAGGAACTAC
AAACCATTCTCTTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
GCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAGCCATCGATTCTCATAACAGT
CTCCAATCTTTTCAAGACTGGGAAGCCAAAACACATTCCTTTCACTAGGATACAAGACATTGATG
CTTTGGGGTCACAAGAAAAGCTTTTCTTTCTACCATTTTTGTTAGAATCAAAGTTTGTCTCCTAA
ATACGAAAAACCTGAATACTAATACTAATCCCCATTCTTTTCAAGATTGGGCACCATAAACACAG
TATTCTCATGAAGATAAATCATAATGAGGCCTTCGTTTCACAAGAAGGCTTTTTTCCCACCAATT
CTTGTAAAGTCTAAGTTCAAGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
TTTTATGATTAGGCACTATAAACACACTCTCCTCTTTAGGATAAATGATACTGATGATTTTCTTT
TGCATGGAAATCGTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA
GCATCGATTCTCGTAACAGTCTCCATT
Found at i:3834952 original size:475 final size:475
Alignment explanation
Indices: 3834059--3835064 Score: 1433
Period size: 475 Copynumber: 2.1 Consensus size: 475
3834049 AGTCTCCATT
* * * * * *
3834059 CTTTTCTTCCCATCATTTTTGATTGAATCAAAGTTTCTCACTTAAATAAGATAAACCTGAATACT
1 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACCTGAATACT
* * * * * * *
3834124 CATATTAATCCCCATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACACG
66 CATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACACAGTCTTCTCATGAAGATAAACG
* * ** * * * *
3834189 ATATTGATGCTTTGGTTTTGCAAGAAATGCGTTTTCCCACTAATTTTTGTAAAGTCTATGTTCAT
131 ATAATGATGCTTTCGTTTCACAAGAAAGGCGTTTTCCCACCAATTCTTGTAAAGTCTAAGTTCAT
* * *
3834254 ACCTCAAATGAGACAAACATGGGTTCTAGTAATTATCTTCATTCATTTTATGATTAGGTACTATA
196 ACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATA
* * *
3834319 AACCCATTCTCCTTTTTAGGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCATTTCTTT
261 AACACACTCTCCTTTTTAGGATAAACGATATAGATGATTTTCTTTTGCATGGAAATCATTTCTTT
* * * * *
3834384 GCCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGTGTTGATTCTTGTACCAGT
326 GCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATTCTCGTAACAGT
* * * *
3834449 CTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCCTTTTACTAGGATACATGACATTGATG
391 CTCCATTGTTTTCTTGATTGGCAAGCCAAAACACATTCCTTTCACTAGGATACAAGACATTGATA
3834514 CTTTGGTGTCACAAGAAAAG
456 CTTTGGTGTCACAAGAAAAG
* * * *
3834534 CTTTTCTTTCCTCCGTTTTTTATAGAATCAAAGTTTGTCTCTTACA-AAGAAAAACCTGAATACT
1 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACCTGAATACT
*
3834598 CATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACACAGTCTTCTCATGAAGATAAATG
66 CATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACACAGTCTTCTCATGAAGATAAACG
* ** *
3834663 ATAATGATGTTTTCGTTTCACAAGAAAGGTTTTTTTCCCACCAATTCTTGTAAAGTCTAAGTTCC
131 ATAATGATGCTTTCGTTTCACAAGAAAGG-CGTTTTCCCACCAATTCTTGTAAAGTCTAAGTTCA
* * * * *
3834728 TGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTTATTCATTTTATGATTCGGCAGTAT
195 TACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTAT
* *
3834793 AAACACACTCTCCTTTTTAGGATAAATGATATAGATGATTTAT-TTTTGCATGGAAATCTTTTCT
260 AAACACACTCTCCTTTTTAGGATAAACGATATAGATGATTT-TCTTTTGCATGGAAATCATTTCT
* *
3834857 TTGCCCTATTTTTCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCGTCGATTCTCGTAACA
324 TTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATTCTCGTAACA
* * *
3834922 GTCTCGATT-TGTTTCTTGATTGGCAAGCCAAAACACATTCCTTTCATTAGGGTACAAGACATTG
389 GTCTCCATTGT-TTTCTTGATTGGCAAGCCAAAACACATTCCTTTCACTAGGATACAAGACATTG
*
3834986 ATACTTTGGTGTCGCAAGAAAAG
453 ATACTTTGGTGTCACAAGAAAAG
*
3835009 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
1 CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAAC
3835065 AAGAATCATT
Statistics
Matches: 464, Mismatches: 63, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
474 98 0.21
475 357 0.77
476 9 0.02
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (475 bp):
CTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAAAAACCTGAATACT
CATACTAATCCCCATTCTTTTCAAGATTTGGCACCATAAACACAGTCTTCTCATGAAGATAAACG
ATAATGATGCTTTCGTTTCACAAGAAAGGCGTTTTCCCACCAATTCTTGTAAAGTCTAAGTTCAT
ACCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATA
AACACACTCTCCTTTTTAGGATAAACGATATAGATGATTTTCTTTTGCATGGAAATCATTTCTTT
GCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATTCTCGTAACAGT
CTCCATTGTTTTCTTGATTGGCAAGCCAAAACACATTCCTTTCACTAGGATACAAGACATTGATA
CTTTGGTGTCACAAGAAAAG
Found at i:3835279 original size:264 final size:262
Alignment explanation
Indices: 3834809--3835325 Score: 766
Period size: 264 Copynumber: 2.0 Consensus size: 262
3834799 ACTCTCCTTT
* *
3834809 TTAGGATAAATGATATAGATGATTTATTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTT
1 TTAGGATAAATGATATAGATGATTTATTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTT
* * ** **
3834874 AAATCAAAGTTCATACCTTAAATAAGACGAGCGTCGATTCTCGTAACAGTCTCGATTTGTTTCTT
66 AAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCATAACAGTCTCGATTCCTTTCAA
* *
3834939 GATTGGCAAGCCAAAACACATTCCTTTCATTAGGGTACAAGACATTGATACTTTGGTGTCGCAAG
131 GATTGGCAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTTGGTGTCGCAAG
3835004 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGA
196 AAAAGCTTTTCTTT-CACCATTTTTGATAGAATCAAAGTTTG-CTCTTAAATAAGACAAACAAGA
3835069 ATCA
259 ATCA
* *
3835073 TTAGGATAAATGATATTGATGATTT-TCTTTTGCATGGAAATCTTTTCTTTATCCTATTTTCCTT
1 TTAGGATAAATGATATAGATGATTTAT-TTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTT
* * * * * *
3835137 TAAATGAAAGTTCATATCTTAAATAAGACTAGTATCGATTCTCATAATAGTCTCTATTCCTTTCA
65 TAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCATAACAGTCTCGATTCCTTTCA
* * * *
3835202 AGGTTGGGAAGCCAAAACACATTCCCTTCATTCGGATACAAGACATTGATTCTTTGGTGTCGCAA
130 AGATTGGCAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTTGGTGTCGCAA
* ** *
3835267 GAAAAGCTTTTCTTTTACTGTTTTTGATAGAATCAAAGTTTGCTCTTAAATAGGACAAA
195 GAAAAGCTTTTCTTTCACCATTTTTGATAGAATCAAAGTTTGCTCTTAAATAAGACAAA
3835326 TGTGAAAACT
Statistics
Matches: 226, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
262 16 0.07
263 25 0.11
264 185 0.82
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (262 bp):
TTAGGATAAATGATATAGATGATTTATTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCCTTT
AAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCATAACAGTCTCGATTCCTTTCAA
GATTGGCAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATACTTTGGTGTCGCAAG
AAAAGCTTTTCTTTCACCATTTTTGATAGAATCAAAGTTTGCTCTTAAATAAGACAAACAAGAAT
CA
Found at i:3836941 original size:476 final size:474
Alignment explanation
Indices: 3835073--3839308 Score: 4977
Period size: 476 Copynumber: 8.9 Consensus size: 474
3835063 ACAAGAATCA
* **
3835073 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTATCCTATTTTCCTTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTT
* * * * * * * * *
3835138 AAATGAAAGTTCATATCTTAAATAAGACTAGTATCGATTCTCATAATAGTCTCTATTCCTTTCAA
66 AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTA
* * *
3835203 GGTTGGGAAGCCAAAACACATTCCCTTCATTCGGATACAAGACATTGATTCTTTGGTGTCGCAAG
131 GATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAG
* * *
3835268 AAAAGCTTTTCTTTT-ACTGTTTTTGATAGAATCAAAGTTTG-CTCTTAAATAGGACAAATGTGA
196 AAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGA
* * * * *
3835331 AAACTCATATTGATCCCTATTTTTTTCAAAATTGGGCACCATAAACATAGTCTTCTTC-TTAGGA
261 ATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTC-TCATTAGGA
* * * * * *
3835395 TACATC-ATATTGATGCCTTCGTTTCGAAAGAAAGGC-TTTTTACTCACCAATTTTTGTAAAGTC
325 TACA-CGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTT-CCCACCAATTTTTGTAAAGTC
* ** *
3835458 TATGTTCACGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATAA
388 TAAGTTCATACCTCAAATGAGACAAACATGG-TTCTAGTAATGATCTTCATTCATTTTGTGATTA
**
3835523 GGCACTATATGCACATTCTCCTC
452 GGCACTATAAACACATTCTCCTC
* * **
3835546 TTCATGATAAATGATAATGATGATTTT-TTTTGCATGAAAATCTTTTCTTTATCCTATTTTCCTT
1 TT-AGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * **
3835610 TAAATTAAAGTTTATACCTTAAATAAGATAAGCATTAATTCTCGTAACAGTCTCCATTCTTTTCT
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* * * * * * * * *
3835675 TGATTGGGAAGCAAAAACACTTTCCGTTCGTTAGGATGCACGACATTGATGATTTGGTGTCGCAT
130 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
* * **
3835740 GAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACAAG
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTG
* * * * *
3835805 AATACTTATACGGATTCCCATTCTTTTCAATATTGGGCACCATAAACATAGTCTTCTCATTTGGA
260 AATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGA
** * * * *
3835870 TATGCGATATTAAAGCTTTGGCTTCGCAAGAAATGTATTTTTCCCACTAATTTTTGTAAAGTCTA
325 TACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTA
* * ** *
3835935 AGTTCGTACCTCAATTGAGACAAACATGGGTTCTAGTTGTGATCTTCATTCATTTTGGGATTAGG
390 AGTTCATACCTCAAATGAGACAAACAT-GGTTCTAGTAATGATCTTCATTCATTTTGTGATTAGG
* *
3836000 AACTACAAACACATTCTCCTC
454 CACTATAAACACATTCTCCTC
* *
3836021 ATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATATTTTCTTTGCCTTATTTTCCTT
1 -TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3836086 AAAATCGAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCA
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* * * * * *
3836151 AGGTTGGGAAGCCAAAACACATTCTCTTAATTAGGATACAAGACATGGATGTTTTGGTGTCACAA
130 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
* * * *
3836216 GAAAA-CTTTTCTTTTCGCCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGACAAATGTG
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTG
*** * * * * *
3836280 AATACTTGCACTGATTCCCATTCTTTTCAAGATTGGGCACCATAAACATTGTTTTCTCCTAAGGA
260 AATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGA
* * * * * * *
3836345 CACATC-ATATTGATGCCTTGGTTTCACACGAAAGGC-TTTTTCCTTACCAATTTTTGTAAAGTC
325 TACA-CGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCC-CACCAATTTTTGTAAAGTC
* * * *
3836408 TATGTTCATGCCTCAAATGAAACAAACATGGATTCTAGTAAT-ACTTTTCATTCATTTTGTGATT
388 TAAGTTCATACCTCAAATGAGACAAACATGG-TTCTAGTAATGA-TCTTCATTCATTTTGTGATT
*
3836472 AGGCACTATAAACACATTTTCCTC
451 AGGCACTATAAACACATTCTCCTC
* * * *
3836496 TTCATGATAAATGATACTGATGGCTTTT-TTTTGCATGAAAATCTTTTCTTTGTCCTATTTTCCT
1 TT-AGGATAAATGATATTGAT-GATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* * ** * *
3836560 TCAAATTAAAGTTTTTATCC-TAAATAAGATAAGAATCGATTCTCGTAACAGTCTCCATTCTTTT
64 TTAAATCAAAGTTCATA-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTT
* * * * * * *
3836624 CTTGATTGGGAAGCAAAAACACTTTCCCTTTATTAGGATGCATGACATTGATGATTTGGTGTCGC
128 CTAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGC
* *
3836689 AAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAACA
193 AAGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACG
* * * * *
3836754 AGAATACTTATACGGATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTTG
258 TGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAG
* *
3836819 GATACGCGATATTGAAGCTTTGGTTTCGCAAGAAATGTATTTTTCCCACCAATTTTTGTAAAGTC
323 GATACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTC
** * *
3836884 TAAGTTTGTACCTCAATTGAGACAAACATTGGTTCTAGTAATGATCTTCATTCATTTTGGGATTA
388 TAAGTTCATACCTCAAATGAGACAAACA-TGGTTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * *
3836949 AGAACTACAAACACAATCTCCT-
452 GGCACTATAAACACATTCTCCTC
* * * *
3836971 TAATAGGATAAATGATATTGATGATTTTTTTTTGCATGGATATCTTTTCTTTGCCTTATTTTCCT
1 T--TAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCT
* *
3837036 TTAAATCAAAGTTCATACCTTAAATAAGACAACCATCAATTCTCGTAACAGTCTCCATTCTTTTC
64 TTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * * * * *
3837101 AAGGTTGGGGAGCCAAAACACATTCCCTTCATTCGGATACAAGAGATTGTTGCTCTGGTGTCGCA
129 TAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCA
* * * *
3837166 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTTTCTCTTAAATACGACAAACGT
194 AGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT
* * * *
3837231 GAAAACTCACACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTCAGG
259 GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGG
* * * *
3837296 ATACATC-ATATTGATGCCTTGGTTTCGTAAGAAAGGC-TTTTTCCTCACCAATTTTTGTAAAGT
324 ATACA-CGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCC-CACCAATTTTTGTAAAGT
* * * * *
3837359 CCATGTTCAT-CCTCAAATGAGGCAAACATGGATTGTAGTAATGATCTTCATTCATTTTGTGATC
387 CTAAGTTCATACCTCAAATGAGACAAACATGG-TTCTAGTAATGATCTTCATTCATTTTGTGATT
*
3837423 AGGCACTATAAACACATTCTCCATT
451 AGGCACTATAAACACATTCTCC-TC
* *
3837448 TTAGGATAAATGATACTGATGATTTTCTTTTGCA-CAGAAATCTTTTCTTTGCCCTATTTTCCTT
1 TTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
3837512 TAAATCAAAGTTCATACCTTAAATAAGATAA-CATTGATTCTCATAACAGTCTTCATTCTTTTCA
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* ** * * * *
3837576 AGATTGGGAAGCCGATTCGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGAAA
130 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
* * * * *
3837641 GAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGTTTATCTCTTAAATAAGAC-AAGGCT
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACG-T
* * * *
3837705 GAATACTCATACTAATCCACATTCTTTT-AAGGATTTGGCACCATAAACGTAGTCTTCTCATTAG
259 GAATACTCATACTGATCCCCATTCTTTTCAA-GATTGGGCACCATAAACATAGTCTTCTCATTAG
** * * * * * * *
3837769 GATACATAATTTTGATGCTTTAGTTTTGAAAGAAATGCATTTTTCCCACCAATTTTTGCAAAGTA
323 GATACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTC
* *
3837834 TAAGTTCATACCACAAATGAGACAAACATGGGTTCTAGTAATTATCTTCATTCATTTT-TGGATT
388 TAAGTTCATACCTCAAATGAGACAAACAT-GGTTCTAGTAATGATCTTCATTCATTTTGT-GATT
* *
3837898 AGGAACTATAAA-GCATTCTCCTC
451 AGGCACTATAAACACATTCTCCTC
* * * *
3837921 ATTAGGATAAATGATATTGATGATTTTCTTTTACGTGGAAATCTTTTCTTTACCCTATTTTCCTT
1 -TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
** * * * * * *
3837986 TAAATTGAAGTTCATTCCTT-AATAAAACAAGCATCAATTCACATAATAGTCTCCATTCTTTTCT
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* * * * ** *
3838050 TGATTGGAAAGCCAAAACACATTCCCTTCATTAGGATATATGACATTGATGCTTTCATGTCACAA
130 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
* * *
3838115 GGAAAGCTTTTCTTTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATACA-ACAAACGT
195 GAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACGT
* * * *
3838179 GAATACTTATACTGATCCCCATTCTTTTCATGATTGGGCCCCATAAACCTAGTCTTCTCATTAGG
259 GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGG
* * * *
3838244 ATACACTATATTGACGCTTTGGCTTCACAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCT
324 ATACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCT
* * * * * * * * * *
3838309 AGGTTCGTGCCTCAAAAGAGACAAACATGAATTCTAATAATAATCTTCATTTATTTTGTTATAAG
389 AAGTTCATACCTCAAATGAGACAAACATG-GTTCTAGTAATGATCTTCATTCATTTTGTGATTAG
*
3838374 GCGCTATAAACACATTCTCCTC
453 GCACTATAAACACATTCTCCTC
* * * *
3838396 TTTTGGATAAATGGTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATT
1 -TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
3838461 TAAATGAAAGTTCATAACTTAAATAAGACAAGCATTGATTTTCGTAATAGTCTCTATTCTTTT-T
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* * * * * *
3838525 AAGGTTAGGAAGCTAATACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
130 -AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCA
* * * * * *
3838590 AGGAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGACAAATGT
194 AGAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT
* * * * *
3838655 GAATACTCATTCTGATCCACATTCTTTTCAAGATTAGGCACCATAAACACAGTCCTCTCATTAGG
259 GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGG
* * *
3838720 ATACACTG-TATT-AATGCTTTCGTATCACAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGT
324 ATACAC-GATATTGAA-GCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGT
*** * * * * *
3838783 CCGTGTTCGT-GCTACAAAAGAGACAAATA-GAGATTCTAGTAATGATCTTCATTCATTTTATGA
387 CTAAGTTCATACCT-CAAATGAGACAAACATG-G-TTCTAGTAATGATCTTCATTCATTTTGTGA
* *
3838846 TTAGGCACTATACAGACATTCTCCTC
449 TTAGGCACTATAAACACATTCTCCTC
* * * * *
3838872 TTTTGGATAAATGATATTGAAGATTTTCTTCTGCATGAAAATCATTTGTTTGCCCTATTTTCCTT
1 -TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * * *
3838937 TAAATCAAAGTTTATACCTTGAATAAAACAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCT
65 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCT
* *
3839002 AGATTAGGAAGCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
130 AGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA
* *
3839067 -AAAATGCTTTTC-TTT--CC----ATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGT
195 GAAAA-GCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGT
* ** * * *
3839124 GAATACTCATACTGATCGCCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGG
259 GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGG
** * * *
3839189 ATACGTGATATTAAAGCTTTCG--TCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCT
324 ATACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCT
3839252 AAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT
389 AAGTTCATACCTCAAATGAGACAAACAT-GGTTCTAGTAATGATCTTCATTCATTTT
3839309 ATACCTTGAA
Statistics
Matches: 3195, Mismatches: 507, Indels: 128
0.83 0.13 0.03
Matches are distributed among these distances:
467 82 0.03
468 4 0.00
469 108 0.03
470 2 0.00
473 174 0.05
474 688 0.22
475 914 0.29
476 1208 0.38
477 15 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTT
AAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTA
GATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAG
AAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGA
ATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGAT
ACACGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAA
GTTCATACCTCAAATGAGACAAACATGGTTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCA
CTATAAACACATTCTCCTC
Found at i:3839606 original size:359 final size:359
Alignment explanation
Indices: 3838947--3839667 Score: 1415
Period size: 359 Copynumber: 2.0 Consensus size: 359
3838937 TAAATCAAAG
*
3838947 TTTATACCTTGAATAAAACAAGCATTGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAA
1 TTTATACCTTGAATAAAACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAA
3839012 GCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAATGCTTT
66 GCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAATGCTTT
3839077 TCTTTCCATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCG
131 TCTTTCCATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCG
3839142 CCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTAAAGCT
196 CCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTAAAGCT
3839207 TTCGTCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAG
261 TTCGTCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAG
3839272 ACAAACATGGGTTCTAGTAATGATCTTCATTCAT
326 ACAAACATGGGTTCTAGTAATGATCTTCATTCAT
3839306 TTTATACCTTGAATAAAACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAA
1 TTTATACCTTGAATAAAACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAA
3839371 GCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAATGCTTT
66 GCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAATGCTTT
*
3839436 TCTTTGCATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCG
131 TCTTTCCATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCG
*
3839501 CCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTGAAGCT
196 CCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTAAAGCT
3839566 TTCGTCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAG
261 TTCGTCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAG
3839631 ACAAACATGGGTTCTAGTAATGATCTTCATTCAT
326 ACAAACATGGGTTCTAGTAATGATCTTCATTCAT
3839665 TTT
1 TTT
3839668 GGGATTAGGA
Statistics
Matches: 359, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
359 359 1.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.34
Consensus pattern (359 bp):
TTTATACCTTGAATAAAACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAA
GCCAAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAAAAATGCTTT
TCTTTCCATGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCG
CCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTAAAGCT
TTCGTCGCAAGAAATGCATTTTTCCCACAAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAG
ACAAACATGGGTTCTAGTAATGATCTTCATTCAT
Found at i:3840409 original size:476 final size:477
Alignment explanation
Indices: 3839309--3844205 Score: 6061
Period size: 476 Copynumber: 10.3 Consensus size: 477
3839299 CATTCATTTT
* * *
3839309 ATACCTTGAATAAAACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
*
3839374 AAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA-AAAATGCTTTTC
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAA-GCTTTTC
* *
3839438 TTT---GCA----TGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACT
130 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACT
* ** * * * * *
3839496 GATCGCCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTG
195 GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
* * * * *
3839561 AAGCTTTCG--TCGCAAGAAATGCATTTTTCC-CACAAATTTTTGTAAAGTCTAAGTTCATACCT
260 ATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCT
* * * * * *
3839623 CAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAACCT
325 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * **
3839688 CATTCTCCT-TAATAGGGTAGA-TGATATTGATGATTTTCTTTTGCGTGGTTATCTTTTCTTTGC
390 CATTCTCCTCT-TTAGGATA-ATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* *
3839751 CGTATTTTCCTTTAAAACAAAAGTTC
453 CCTATTTTCCTTTAAATC-AAAGTTC
* * * * * * *
3839777 ATTCCTTAAATAACACAAGCATCGATTCTCGTAATAGTCTCCATTGTTTACAAGGTTGGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
* * *
3839842 AAAACACATTCCCTTCATTCGGATACAAGACATTGCTGCTTTGGTATCGCAAGAAAAGCTTTTCT
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * *
3839907 TTCCACCGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATTCTA
131 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTG
* ** * *
3839972 ATCCCCGTTCTTTTCAAGATTGGGCGGCATAAACATAGTCTTCTCCTCAGGATACATCATATTGA
196 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* *
3840037 TGCTTTAGTTTTGCAAGAAAGGC-TTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
261 TGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
* *
3840101 AAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCATTTTTTGATTAGGCACTATAAACAC
326 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
3840166 ATTCTCTTCTTTAGGATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
391 ATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
3840231 ATTTTCCTTTAAATCAAAGTTC
456 ATTTTCCTTTAAATCAAAGTTC
* * *
3840253 ATACCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCTTGATTAGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
* * * * * *
3840318 AAAACACATTTCCTTCATTAGGGTACAAGACATTGATGCTTTGGGGTCGTAGGAAAAGCTTTTTT
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
3840383 TTCCACCATTTTTGATAGAATCAAAGTTTTTCTCTTAAATACGGCAAACGTGAAAACTCACACTG
131 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTG
* *
3840448 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTCAGGATACATCATATTGA
196 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * ** * *
3840513 TGCCTTGGTTTCTTAAGAAAGGC-TTTTTCCTCACCAATTTTTGTAAAGTCCATGTTCAT-CCTC
261 TGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
* * * *
3840576 AAATGAGGCAAACATGGATTGTAGTAATGATCTTCATTCATTTTGTGATCATGCACTATAAACAC
326 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* * *
3840641 ATTCTCCAT-TTTAGGATAAATGATACTGATGATTTTCTTTTGCACGGAAATCTTTTCTTTGCCC
391 ATTCTCC-TCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
3840705 TATTTTCCTTTAAATCAAAGTTC
455 TATTTTCCTTTAAATCAAAGTTC
* * * * * * *
3840728 ATACCTTAAATAAGATAAGCATTGATTCTCATAACAGTCTTCATTCTTTTCAAGATTGGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
* ** * * * *
3840793 GATTCCCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGAAAGAAAAGCTTTTCT
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * *
3840858 TTCCATCGTTTTTGATAGAATTAAAGTTTATCTCTTAAATAAGAC-AATGCTGAATACTCATACT
131 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACG-TGAATACTCATACT
* * * * * *
3840922 AATCCACATTCTTTT-AAGGATTTGGCACCATAAACGTAGTCTTCTCATTAGGATACATAATTTT
195 GATCCCCATTCTTTTCAA-GATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATT
* * * * * *
3840986 GATGCTTTAGTTTTGAAAGAAATGCATTTTTCC-CACCAATTTTTGCAAAGTATAAGTTCATACC
259 GATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCC
* * * * *
3841050 ACAAATGAGACAAACATGGGTTCTAGTAATTATCTTCATTCATTTT-TGGATTAGGAACTACAAA
324 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGT-GATTAGGCACTATAAA
* * * * *
3841114 -GCATTCTCCTCATTAGGATAA-TGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTAC
388 CACATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
**
3841177 CCTATTTTCCTTTAAATTGAAGTTC
453 CCTATTTTCCTTTAAATCAAAGTTC
* * * * * *
3841202 ATTCCTT-AATAAAACAAGCATCAATTCACATAATAGTCTCCATTCTTTTCTTGATT-GGAAAGC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGG-AAGC
* * ** * *
3841265 CAAAACACATTCCCTTCATTAGGATATATGACATTGATGCTTTCTTGTCACAAGGAAAGCTTTTC
65 CAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
3841330 TTTTCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATACA-ACAAACGTGAATACTTATAC
130 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACGTGAATACTCATAC
* * * *
3841394 TGATCCCCATTCTTTTCATGATTGGGCCCCATAAACCTAGTCTTCTCATTAAGATACA-CTATAT
194 TGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATAT
* * * * * *
3841458 TGACGCTTTGGCTTCACAAGAAATGCATTTTT-CTCACCAATTTTTGTAAAGTCTAGGTTCGTGC
258 TGATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGC
* * * * * * * *
3841522 CTCAAAAGAGACAAACATGAATTCTAATAATAATCTTCATTTATTTTGTTATAAGGCGCTATAAA
323 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * *
3841587 CACATTCTCCTCTTTTGGATAAATGGTATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
388 CACATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
* * *
3841652 CCGATTTTCATTTAAATGAAAGTTC
453 CCTATTTTCCTTTAAATCAAAGTTC
* * * *
3841677 ATAACTTAAATAAGACAAGCATCGATTTTCGTAATAGTCTCTATTCTTTT-TAAGGTTAGGAAGC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCT-AGATTAGGAAGC
* * * * * *
3841741 TAATACACATTCCTTTCATTAAGATACATGACATTGATGCTTTGGTGTCGCAAGGAAAGCTTTTC
65 CAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
** * * * *
3841806 TTTCCACTGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGACAAATGTGAATACTCATTCT
130 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACT
* * * * *
3841871 GATCCACATTCTTTTCAAGATTAGGCACCATAAACAGAGTCCTCTCATTAGGATACA-CTGTATT
195 GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATC-ATATT
* * * * *** *
3841935 AATGCTTTCGTATCACAAGAAATGCATTTTTCC-CACCAATTTTTGTAAAGTCCGGGTTCGTG-C
259 GATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCC
* * * * *
3841998 TACAAAAGAGACAAATA-GAGATTCTAGTAATGATCCTCATTCATTTTATGATTAGGCACTATAC
324 T-CAAATGAGACAAACATG-GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
* * * * * * * *
3842062 AGACATTCTCCTCTTTCGGATAAATGATATTGAAGATTTTCTTCTGCACGGAAATCATTTGTTTG
387 ACACATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG
*
3842127 CCCTATTTTCCTTTAAATCAAAGTTT
452 CCCTATTTTCCTTTAAATCAAAGTTC
* *
3842153 ATACCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
*
3842218 AAAACACTTTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAA-AAAATGCTTTTC
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAA-GCTTTTC
* *
3842282 TTT---CCA----TGATAGAATCAAAGTTTGTCTTTTAAATACGACAAACGTGAATACTCATACT
130 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACT
* ** * * * * *
3842340 GATCGCCAGCCTTTTCAAGATTTGGCACCATAAACATTGTCTTCTCATTTGGATACGTGATATTG
195 GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTG
* * * * *
3842405 AAGCTTTCG--TCGCAAGAAATGCATTTTTCC-CACAAATTTTTGTAAAGTCTAAGTTCATACCT
260 ATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCT
* * * * * *
3842467 CTAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACT
325 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* * * ** *
3842532 CATTCTCCT-TAATAGGGTAGA-TGATATTGATGATTTTCTTTTGCGTGGTTATCTTTTCTTTCC
390 CATTCTCCTCT-TTAGGATA-ATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
3842595 CCTATTTTCCTTTAAAACAAAAGTTC
453 CCTATTTTCCTTTAAATC-AAAGTTC
* * * * * *
3842621 ATTCCTTAAATAACACAAGCATCGATTCTCGTAATAGTCTCCATTGTTTTCAAGGTTGGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
* * *
3842686 AAAACACATTCCCTTCATTCGGATACAAGACATTGCTGCTTTGGTATCGCAAGAAAAGCTTTTCT
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * *
3842751 TTCCACCGTTTTTGATAGATTCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATTCTA
131 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTG
* * * *
3842816 ATCCCCGTTCTTTTCAAGATTGGGCGCCATAAACATAGTCTTCTCCTCAGGATACATCATATTGA
196 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
* * *
3842881 TGCTTTAGTTTTGTAAGAAAGGC-TTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
261 TGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
* *
3842945 AAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCATTTTTTGATTAGGCACTATAAACAC
326 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
* *
3843010 ATTCTCTTCTTTAGGATAATTGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
391 ATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
3843075 ATTTTCCTTTAAATCAAAGTTC
456 ATTTTCCTTTAAATCAAAGTTC
* * * *
3843097 ATACCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTTGTTGATTAGGAAGC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC-TTTTCTAGATTAGGAAGC
* * * * *
3843162 CAAAACACATTTCCTTCATTAGGGTACAAGACATTGATGCTTTGGGGTCGTAGGAAAAGCTTTTC
65 CAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* * *
3843227 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATACA-ACAAATGCGAATACTCATAC
130 TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACGTGAATACTCATAC
* * ** * * * *
3843291 TGATCCTCATTCTTTTCAGGATTGGGTGCCATAAACATAGTCTTCTGATTTGGATATAACATATT
194 TGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATT
* * * *
3843356 GATGCCTT-GTTTTCGCAAGAAAAGC-TTTTTCCTCACCAATTTTTGCAAAGCCTATGTTCATGC
259 GATGCTTTAG-TTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGC
* * *
3843419 CTCAAATGAGACAAACATGGATTCTAGTAATTATCTTCATTCATTTTGTGGTTAGGCAATATAAA
323 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAA
* * * *
3843484 CACATTCTCCTCTTTAGGATAATTGTTATTAATGTTTTTCTTTTGCATGGAAAACTTTTCTTTGC
388 CACATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC
*
3843549 CCTATTTTACTTTAAATCAAAGTTC
453 CCTATTTTCCTTTAAATCAAAGTTC
* * * * *
3843574 ATACCTTAAATAAGACAAGCATCGACTCTCGTAACAGTCTCCATTCTTTTCGAGGTTGGGAAGCC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
* * * * * *
3843639 AAAACACATTCCCTTCATTAGGATACATGCCATTGATGCTTTTGTGTCGCATGAAAGGTTTTTCT
66 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * * * *
3843704 TTTCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAATATGACAAATGTGAAAACACATGCTG
131 TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTG
* * * *
3843769 ATGCCCATTCTTTTCAAGATTGGGC-CCTATAAACATAGTCTTCTCCTAAGGATACATCATATTT
196 ATCCCCATTCTTTTCAAGATTGGGCACC-ATAAACATAGTCTTCTCATTAGGATACATCATATTG
* * * * * * *
3843833 ATGCCTTGGTTTCACAAGAAAGGCA-TTTTCCTTACCAATTGTTGTAAAATCTATGTTCATGCCT
260 ATGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCT
*
3843897 CAAATGAGACAAATATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTAT-AACA
325 CAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACA
* *
3843961 CATTCTCCTCTTTAGGATAATTGATATTGGTGTTTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
390 CATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* *
3844025 AATTTTCCTTTACATCAAAGTTC
455 TATTTTCCTTTAAATCAAAGTTC
** * * * * *
3844048 ATATTTTAAATAAGACATGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGATT-GAGAAGC
1 ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAG-GAAGC
* * * * * *
3844112 CAATACACATTCCCTTCTTTAGGATACATGATATTGATGCTTTGGGGTCGTAAGAAAAGCTTTTC
65 CAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
*
3844177 TTTCCAACATTTTTGATAGAATCAAAGTT
130 TTTCCACCATTTTTGATAGAATCAAAGTT
3844206 GTTAGGATCT
Statistics
Matches: 3809, Mismatches: 555, Indels: 124
0.85 0.12 0.03
Matches are distributed among these distances:
466 1 0.00
467 158 0.04
468 239 0.06
469 115 0.03
471 3 0.00
472 3 0.00
473 304 0.08
474 252 0.07
475 769 0.20
476 1204 0.32
477 758 0.20
478 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (477 bp):
ATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTAGATTAGGAAGCC
AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
TTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACGTGAATACTCATACTG
ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGA
TGCTTTAGTTTCGCAAGAAATGCATTTTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTC
AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACAC
ATTCTCCTCTTTAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
ATTTTCCTTTAAATCAAAGTTC
Found at i:3844531 original size:13 final size:13
Alignment explanation
Indices: 3844513--3844537 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3844503 AACAGATTGC
3844513 ATTGTATCGATAT
1 ATTGTATCGATAT
3844526 ATTGTATCGATA
1 ATTGTATCGATA
3844538 CATGACCAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (13 bp):
ATTGTATCGATAT
Found at i:3844553 original size:20 final size:21
Alignment explanation
Indices: 3844528--3844580 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
3844518 ATCGATATAT
**
3844528 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
3844548 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
3844569 TGTATCGATACA
1 TGTATCGATACA
3844581 GGTCATTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:3844650 original size:13 final size:13
Alignment explanation
Indices: 3844632--3844657 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3844622 ACATATAGTA
3844632 TGTATCGATACAT
1 TGTATCGATACAT
3844645 TGTATCGATACAT
1 TGTATCGATACAT
3844658 CATAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3844673 original size:33 final size:32
Alignment explanation
Indices: 3844612--3844679 Score: 109
Period size: 33 Copynumber: 2.1 Consensus size: 32
3844602 GTGGCCAAAT
**
3844612 TTGTATCGATACATATAGTATGTATCGATACA
1 TTGTATCGATACATATAAAATGTATCGATACA
3844644 TTGTATCGATACATCATAAAATGTATCGATACA
1 TTGTATCGATACAT-ATAAAATGTATCGATACA
3844677 TTG
1 TTG
3844680 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 14 0.42
33 19 0.58
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.37
Consensus pattern (32 bp):
TTGTATCGATACATATAAAATGTATCGATACA
Found at i:3846276 original size:9 final size:9
Alignment explanation
Indices: 3846259--3846294 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
3846249 TCAACCATCA
*
3846259 AAGACGATG
1 AAGATGATG
3846268 AAGATGATG
1 AAGATGATG
3846277 AAGATGATG
1 AAGATGATG
*
3846286 ATGATGATG
1 AAGATGATG
3846295 GTGACTCAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.42, C:0.03, G:0.33, T:0.22
Consensus pattern (9 bp):
AAGATGATG
Found at i:3850109 original size:52 final size:52
Alignment explanation
Indices: 3850039--3850159 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
3850029 GAAAATTTAT
*
3850039 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
*
3850091 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
3850143 CTGCATGTATCGATACA
1 CTGCATGTATCGATACA
3850160 AAGATCAGTG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (52 bp):
CTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGC
Found at i:3850172 original size:52 final size:51
Alignment explanation
Indices: 3850039--3850179 Score: 212
Period size: 52 Copynumber: 2.7 Consensus size: 51
3850029 GAAAATTTAT
3850039 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* *
3850091 CTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
3850143 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
3850180 ATGTATCGAT
Statistics
Matches: 82, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
51 2 0.02
52 80 0.98
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:3850186 original size:13 final size:13
Alignment explanation
Indices: 3850168--3850192 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3850158 CAAAGATCAG
3850168 TGTATCGATACAA
1 TGTATCGATACAA
3850181 TGTATCGATACA
1 TGTATCGATACA
3850193 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3850275 original size:13 final size:13
Alignment explanation
Indices: 3850257--3850281 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3850247 CAAAAAAATA
3850257 TGTATCGATACAT
1 TGTATCGATACAT
3850270 TGTATCGATACA
1 TGTATCGATACA
3850282 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3850277 original size:33 final size:33
Alignment explanation
Indices: 3850235--3850301 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3850225 AGTAGCTTAA
3850235 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3850268 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3850301 A
1 A
3850302 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3851380 original size:49 final size:49
Alignment explanation
Indices: 3851238--3851804 Score: 735
Period size: 49 Copynumber: 11.6 Consensus size: 49
3851228 GATGTCAACG
* *
3851238 TGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAATGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAGA--TGCCAATA
* *
3851290 TGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
3851333 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * *
3851382 TGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G--G-TGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
3851425 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * * *
3851474 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
*
3851523 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* * * *
3851572 TGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
3851621 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATA
* * *
3851673 TGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATG
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
* *
3851722 TGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGATGCCAATA
* *
3851774 TGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 TGCTGATTCAAGGCCAGCTACATTGGACTTA
3851805 GAGGGGTTGC
Statistics
Matches: 456, Mismatches: 41, Indels: 36
0.86 0.08 0.07
Matches are distributed among these distances:
43 70 0.15
44 5 0.01
45 2 0.00
46 3 0.01
47 1 0.00
48 5 0.01
49 252 0.55
50 3 0.01
51 3 0.01
52 112 0.25
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATA
Found at i:3851542 original size:98 final size:99
Alignment explanation
Indices: 3851171--3851804 Score: 911
Period size: 98 Copynumber: 6.4 Consensus size: 99
3851161 AAAAGTGATA
* * * * *
3851171 AAGATGCCAATATGTTGATTCATGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGATGTCAA
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT--G---AAGG-TGCCAA
* * *
3851236 CGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGG
60 TGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
* *
3851276 AAAATGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A--AAGGTGCCAATGTG
1 AAGA--TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
*
3851335 CTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
3851370 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
3851429 GAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
3851462 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
3851527 GAGTCAAGGCCAGCTACATTGGACTTAAAGAT-G
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
3851560 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
1 AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
3851625 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
66 GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
* *
3851659 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTG
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTG
3851724 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
64 CTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
* * *
3851760 AAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTA
1 --AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
3851805 GAGGGGTTGC
Statistics
Matches: 503, Mismatches: 15, Indels: 26
0.92 0.03 0.05
Matches are distributed among these distances:
92 128 0.25
94 4 0.01
95 41 0.08
96 5 0.01
98 146 0.29
99 1 0.00
101 141 0.28
103 1 0.00
105 3 0.01
107 33 0.07
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (99 bp):
AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCT
GAGTCAAGGCCAGCTACATTGGACTTAAAGATGG
Found at i:3851922 original size:35 final size:35
Alignment explanation
Indices: 3851871--3852358 Score: 633
Period size: 35 Copynumber: 14.1 Consensus size: 35
3851861 GGGCTTTGGG
*
3851871 AAGGAAAAA-AGATGCCACGGAGTTGTGGAC-TTAA
1 AAGGAAAAAGAG-TGCCACGGAGTTGTGGGCTTTAA
3851905 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
3851941 AA-GAAAAA-AGTGCCACGGAGTTGTGGGC-TTAG
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* * *
3851973 AAGGAAAAAGAGTACCACAGAGTTGTGGGC-TTAG
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
3852007 AAGG-AAAAGAGTGCCACGTAGTTGTGGGCTTT-A
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
*
3852040 AAGG-AAAAGAGTGGCACGGAGTTGTGGGCTTTGAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
*
3852075 AAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
1 AA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* *
3852111 AAAGAAAAAG-GTGCCACGGGGTTGTGGGCTTTGAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
*
3852146 AAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTAA
1 AA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* * *
3852182 AAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
3852217 AA-GAAAAAG-GTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
3852251 AAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
1 AA-GGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* * *
3852287 AAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
* *
3852322 GATGAAAAA-AGTGCCACGGAGTTGTGGGCTTTGAA
1 AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT-AA
3852357 AA
1 AA
3852359 AAGTCCCCAC
Statistics
Matches: 407, Mismatches: 29, Indels: 35
0.86 0.06 0.07
Matches are distributed among these distances:
32 5 0.01
33 99 0.24
34 88 0.22
35 111 0.27
36 36 0.09
37 68 0.17
ACGTcount: A:0.35, C:0.11, G:0.34, T:0.20
Consensus pattern (35 bp):
AAGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTAA
Found at i:3851958 original size:33 final size:35
Alignment explanation
Indices: 3851858--3852358 Score: 591
Period size: 33 Copynumber: 14.4 Consensus size: 35
3851848 CACCGACTTG
* *
3851858 TGTGGGCTTTGGGAAGGAAAAA-AGATGCCACGGAGT
1 TGTGGGCTTT-GAAAAGAAAAAGAG-TGCCACGGAGT
*
3851894 TGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGGAGT
3851929 TGTGGGCTTT-AAAAGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
* * * *
3851962 TGTGGGCTTAG-AAGGAAAAAGAGTACCACAGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
* * *
3851996 TGTGGGC-TT-AGAAGGAAAAGAGTGCCACGTAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
* *
3852029 TGTGGGCTTT--AAAGGAAAAGAGTGGCACGGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
*
3852062 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGGAGT
* *
3852099 TGTGGGCTTTAAAAAGAAAAAG-GTGCCACGGGGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
*
3852133 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGT
1 TGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGGAGT
* * *
3852170 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
3852205 TGTGGGCTTT-AAAAGAAAAAG-GTGCCACGGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
3852238 TGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTGAAAA--GAAAAAGAGTGCCACGGAGT
* * *
3852275 TGTGGGCTTTAAAAAGAAAAAGTGTGCCACAGAGT
1 TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
*
3852310 TGTGGGCTTT-AAGATGAAAAA-AGTGCCACGGAGT
1 TGTGGGCTTTGAA-AAGAAAAAGAGTGCCACGGAGT
3852344 TGTGGGCTTTGAAAA
1 TGTGGGCTTTGAAAA
3852359 AAGTCCCCAC
Statistics
Matches: 407, Mismatches: 37, Indels: 44
0.83 0.08 0.09
Matches are distributed among these distances:
33 108 0.27
34 89 0.22
35 101 0.25
36 28 0.07
37 81 0.20
ACGTcount: A:0.34, C:0.11, G:0.34, T:0.21
Consensus pattern (35 bp):
TGTGGGCTTTGAAAAGAAAAAGAGTGCCACGGAGT
Found at i:3852245 original size:176 final size:173
Alignment explanation
Indices: 3851876--3852359 Score: 705
Period size: 176 Copynumber: 2.8 Consensus size: 173
3851866 TTGGGAAGGA
* *
3851876 AAAAAGATGCCACGGAGTTGTGGAC-TT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * *
3851939 -AAAAGAAAAAAGTGCCACGGAGTTGTGGGC-TTAGAAGGAAAAAGAGTACCACAGAGTTGTGGG
66 AAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGG
* *
3852002 C-TT-AGAAGGAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAG
131 CTTTAAAAAGAAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAG
* * *
3852043 GAAAAGAGTGGCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTT
1 AAAAAG-GTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTT
*
3852108 TAAAAAGAAAAAGGTGCCACGGGGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACAGAGTTGT
65 TAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTT-AAAA-GGAAAAAGAGTGCCACAGAGTTGT
*
3852173 GGGCTTTAAAAAGAAAAAGTGTGCCACAG-AGTTGTGGGCTTTAAAAG
128 GGGCTTTAAAAAGAAAAAGAGTGCCAC-GTAGTTGTGGGCTTT-AAAG
3852220 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
1 AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
* * * *
3852285 AAAAAGAAAAAGTGTGCCACAGAGTTGTGGGCTTTAAGATGAAAAA-AGTGCCACGGAGTTGTGG
66 AAAAAGAAAAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGG
3852349 GCTTTGAAAAA
130 GCTTT-AAAAA
3852360 AGTCCCCACA
Statistics
Matches: 284, Mismatches: 20, Indels: 18
0.88 0.06 0.06
Matches are distributed among these distances:
167 5 0.02
168 16 0.06
169 2 0.01
170 35 0.12
171 28 0.10
172 2 0.01
173 3 0.01
174 49 0.17
175 13 0.05
176 101 0.36
177 30 0.11
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.20
Consensus pattern (173 bp):
AAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTT
AAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGAAAAAGAGTGCCACAGAGTTGTGGG
CTTTAAAAAGAAAAAGAGTGCCACGTAGTTGTGGGCTTTAAAG
Found at i:3858695 original size:20 final size:20
Alignment explanation
Indices: 3858664--3858720 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
3858654 GTCAAAACCC
*
3858664 TGAAAAGTATCGATACACAT
1 TGAAATGTATCGATACACAT
* *
3858684 TTAAATGTATCGATACAGAT
1 TGAAATGTATCGATACACAT
* *
3858704 TGCATTGTATCGATACA
1 TGAAATGTATCGATACA
3858721 TTGTATCGAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (20 bp):
TGAAATGTATCGATACACAT
Found at i:3858724 original size:13 final size:13
Alignment explanation
Indices: 3858706--3858734 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
3858696 ATACAGATTG
3858706 CATTGTATCGATA
1 CATTGTATCGATA
3858719 CATTGTATCGATA
1 CATTGTATCGATA
3858732 CAT
1 CAT
3858735 GACCAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:3858747 original size:20 final size:21
Alignment explanation
Indices: 3858722--3858774 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
3858712 ATCGATACAT
**
3858722 TGTATCGATACATGACCA-AA
1 TGTATCGATACATGAAAAGAA
*
3858742 TGTATCGATACTTGAAAAGAA
1 TGTATCGATACATGAAAAGAA
3858763 TGTATCGATACA
1 TGTATCGATACA
3858775 AGTCATTAGC
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.54
21 13 0.46
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (21 bp):
TGTATCGATACATGAAAAGAA
Found at i:3858844 original size:13 final size:13
Alignment explanation
Indices: 3858826--3858851 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3858816 ACACACAGTA
3858826 TGTATCGATACAT
1 TGTATCGATACAT
3858839 TGTATCGATACAT
1 TGTATCGATACAT
3858852 CATAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3858867 original size:33 final size:32
Alignment explanation
Indices: 3858806--3858873 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 32
3858796 GTAGCCAAAT
**
3858806 TTGTATCGATACACACAGTATGTATCGATACA
1 TTGTATCGATACACACAAAATGTATCGATACA
*
3858838 TTGTATCGATACATCATAAAATGTATCGATACA
1 TTGTATCGATACA-CACAAAATGTATCGATACA
3858871 TTG
1 TTG
3858874 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (32 bp):
TTGTATCGATACACACAAAATGTATCGATACA
Found at i:3861102 original size:476 final size:476
Alignment explanation
Indices: 3859614--3864442 Score: 5455
Period size: 476 Copynumber: 10.1 Consensus size: 476
3859604 TGAGCTTTCA
* * * * *
3859614 AAAGTTTATCTCTTAAATAAGACAAACCTGAATACTCATACTAATCCCTATTCTTTTCAAGATTT
1 AAAGTTTA-CTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTG
* * * * * *
3859679 GGCACCATAAACATAGTATTCTCATTGGGATACAC-GATATTGATGCTTTGGTTTCGCAAAAAAT
65 GGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAG
* * * * *
3859743 GCATTTTT-CTCACCAATTTTTGTAAAGTCTAAGTTCATACCACAAATGAGACAAATATGGGTTT
130 GC-TTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTC
* * * *
3859807 TAGTAATGATCTTCATTCATTTTGGGGTTAGGAACTGCAAACGA-ATTCTCTTCATTAGGATAAA
194 TAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAAC-ACATTCTCCTCTTTAGGATAAA
*
3859871 TGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCAAAG
258 TGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAG
* * * * **
3859935 TTCAGT-TCTTAAAAAAGATAAGCATCGATTCTCGTAACATTCTCCATTCTTTTCTTGATTGGGA
322 TTCA-TACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGA
* * *
3859999 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAAGAAAAGCTT
386 AGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* *
3860064 TTCTTTCCACCGTTCTTGATAAAATC
451 TTCTTTCCACCGTTTTTGATAGAATC
* * * * *
3860090 AAAGTTT-GTAATTAAA-AAGACAAACATGAATA-TGTATAC-GAATCCCCATTCTTTTCAAGAT
1 AAAGTTTACT-CTTAAATACGACAAACGTGAATACT-CATACTG-ATCCCCATTCTTTTCAAGAT
* * * * *
3860151 TGGTCACCATAAAGATAGTCTTCTCATTTTGGATACA-TGATATTGAAGCTTTGGTTTTGCAAGA
63 TGGGCACCATAAACATAGTCTTCTCA-TTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGA
* ** ** * *
3860215 AAGGTTTTTTTCC-CACCAATTTTTGTTGAGTCTAAGTTCGCGCCTCAAAAGCGACAAACGTGGG
127 AAGG-CTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGG
* * * *
3860279 TTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATA
191 TTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
* * *
3860344 AATAATACTGATGATTTTCTTTTGCATCG-AAATCTTTTCTTT-CCCTTATTTTCTTTCATAAAT
256 AATGATATTGATGATTTTCTTTTGCAT-GAAAATCTTTTCTTTGCCC-TATTTTCCTT--TAAAT
* * * *
3860407 CAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCAATCTTTTCAAGGTT
317 CAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATT
* * * * * * *
3860472 GGGAAGCTAATACACATTCCCTTTATTAGGATACATGGCATTGATGCTTTGATGTCACAA-AGAA
382 GGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGA-AA
*
3860536 AGCTTTTCTTTTCACCGTTTTTGATAGAATC
446 AGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * * * *
3860567 AAAGTTTGTCTCTCAAATACAACAAACGTGAATACTCATTCTGATCCACATTCTTTTCAAGATTG
1 AAAGTTT-ACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTG
* * * * *
3860632 GGCACCATAAACACAGTCCTCTCATTAGGATACACT-ATATTGATGCTTTGGTATCGCAAGAAAT
65 GGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAG
* * * *
3860696 GCATTTTTCCT-ACCAATTTTTGTAAAATCTAGGTTCATGCCTCAAAAAAGACAAACATGGATTC
130 GC-TTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTC
** * * * *
3860760 TAGTAATGATCTTCATTCATTTTCTGATTAGGCATTATAAACACATTCTCCTCTTTCGGATAAAT
194 TAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAAAT
* * *
3860825 GATATCGATGATTTTCTTCTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTCTAAATCAAAGTT
259 GATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTT
* * * *
3860890 TATACCTTGAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCTAGATTGGGAAGC
324 CATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGC
* * *
3860955 CAAAACATATTCCCTTCATTAGGATACAAGACATTGATGCTTTGATGTCACAAGAAAAGCTTTTC
389 CAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* *
3861020 TTTCCACCGTTTTCGAGAGAATC
454 TTTCCACCGTTTTTGATAGAATC
* * * *
3861043 AAAGTTTGAATCTTAAATATGACAAACGTGAATACTCATACTGATCCCCATTTTTTTCAAAATTT
1 AAAGTTT-ACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGA--T
* * * * * * * *
3861108 TGAGCACCATAAACATAATCTTTTCCTAAGGATGCA-TCATATTGAAGCCTTGGTTTTGCAAGAA
63 TGGGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAA
* * * * *
3861172 AGGCTTTTTCCTCACCAATTTTTGTAAACTCTATGTTAATGCCTCAAAATAGAC-AACATGGATT
128 AGGCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTT
* * * * *
3861236 CCAGTAATGATCTTGATTCATTTTGTGG-TTTGGTACTATAAACACATTCTCCTCTTTAGGATAA
193 CTAGTAATGATCTTCATTCATTTTG-GGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAA
* ** * *
3861300 TTGATATTGATGCCTTTCTTTTACATGAGAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAG
257 ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAG
* * * *
3861365 TTCATACCTTAAATAAGACATGCATCGATTCTCATAACAGTCTCTATTCTTTTCAAGATTAGGAA
322 TTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * * *
3861430 G-CAAACACGCATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAAGGAAAGCTT
387 GCCAAA-ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
* **
3861494 TTCTTTCCATCACTTTTGATAGAATC
451 TTCTTTCCACCGTTTTTGATAGAATC
* * ** * * * *
3861520 AAAGTTTATCTCTTAAATAAGACAAACCTGAATACTCATACCAATCCCCAATCTCTTCAGGATTT
1 AAAGTTTA-CTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTG
* * *
3861585 GGCACCAT-AACATAGTCTTCTCATTAGGGTAC-CTGATATTGATGCTTTGGTTTTGCAAAAAAG
65 GGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAG
* * * * * * *
3861648 GTTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACCAATATGGATTC
130 G-CTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTC
* * ** *
3861712 TAGAAATGATCTTCATTCATTTTGGGATTAGGAATTACAAATGCATTCTCCTCATTAGGATAAAT
194 TAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAAAT
* * * * *
3861777 AATATTGATGATTTT-TTTTCGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTGAAATCAAAGT
259 GATATTGATGATTTTCTTTT-GCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* * **
3861841 TCATGCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCTTGATTGGGAAG
323 TCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAG
* * *
3861906 CCAAAACACATTCCCTTTACTAAGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
388 CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* ** *
3861971 CATTCCATTGTTTTTGAAAGAATC
453 CTTTCCACCGTTTTTGATAGAATC
* * *
3861995 AAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATA-TGGATGCCCATTCTTTTCTAGATT
1 AAAGTTTA-CTCTTAAATACGACAAACGTGAATACTCATACT-GATCCCCATTCTTTTCAAGATT
* * * * * * *
3862059 -TGCACCGTAAACATAGTCTTCTCATTTGGATACGC-GATGTTGAAGCTTTGGTTTTTGCAAGAA
64 GGGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGG-TTTTGCAAGAA
** * * *
3862122 ATACATTTTT-CTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGGT
128 AGGC-TTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGT
* * * * ** *
3862186 TTTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTACAAACACTTTCTCCT-TAACAGGGTA
192 TCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCT-TTAGGATA
* * * * * *
3862250 AGTGGTATTGATGACTTTCTTTTGCA-CAGATATCTTTTCTTTGCCCTATTTTCCTTTAAATAAA
256 AATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAA
* * * *
3862314 AGCTCATACCTTAAATAAGACAACCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGGTTGGG
320 AGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * ** * * *
3862379 AAGCCAAAACACATTTCCTTTATTCGAATACAAGACATTGCGGCTTTGGTGCCGTAAGAAAGGCT
385 AAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
*
3862444 TTTCTTTCCACCATTTTTGATAGAATC
450 TTTCTTTCCACCGTTTTTGATAGAATC
* * * * * * *
3862471 ATAATTTTTCTCTTCAATATGACAAATGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTC
1 A-AAGTTTACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTG
* * * * **
3862536 GGCACCATAAACATAGTCTTCTCCTAAGGATACA-TCATATTGATGCCTTGGTTTCGTGAGAAAG
65 GGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAG
* * *
3862600 GCTTTTTCATCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGGTTCT
130 GCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTCT
* * * * *
3862665 AGTAAAGATCTTCATTCATTTTGAGATTAGGAACTACAAA-GCATTCTCCTCATTATGATAAATG
195 AGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAAATG
** *
3862729 ATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTACCTTTAAATCAAAGTTC
260 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTC
**
3862794 ATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCC
325 ATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC
* * * *
3862859 AAAACACATTCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCA
390 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
**
3862924 TTCCATTGTTTTTGATAGAATC
455 TTCCACCGTTTTTGATAGAATC
* * *
3862946 AAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATA-TGGATGCCCATTCTTTTCTAGATT
1 AAAGTTTA-CTCTTAAATACGACAAACGTGAATACTCATACT-GATCCCCATTCTTTTCAAGATT
* * * * * * *
3863010 -TGCACCGTAAACATAGTCTTCTCATTTGGATACGC-GATGTTGAAGCTTTGGTTTTTGCAAGAA
64 GGGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGG-TTTTGCAAGAA
** * * *
3863073 ATACATTTTT-CTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGACAAACATGGGT
128 AGGC-TTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGT
* * * * ** *
3863137 TTTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTACAAACACTTTCTCCT-TAACAGGGTA
192 TCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCT-TTAGGATA
* * * * * *
3863201 AGTGGTATTGATGACTTTCTTTTGCA-CAGATATCTTTTCTTTGCCCTATTTTCCTTTAAATAAA
256 AATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAA
* * * *
3863265 AGCTCATACCTTAAATAAGACAACCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGGTTGGG
320 AGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGG
* * * * ** * * *
3863330 AAGCCAAAACACATTTCCTTTATTCGAATACAAGACATTGCGGCTTTGGTGCCGTAAGAAAGGCT
385 AAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
*
3863395 TTTCTTTCCACCATTTTTGATAGAATC
450 TTTCTTTCCACCGTTTTTGATAGAATC
* * * * * * *
3863422 ATAATTTTTCTCTTCAATATGACAAATGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTC
1 A-AAGTTTACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTG
* * * * * **
3863487 AGCACCATAAACATAGTCTTCTCCTAAGGATACA-TCATATTGATGCCTTGGTTTCGTGAGAAAG
65 GGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAG
* * *
3863551 GCTTTTTCATCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGGTTCT
130 GCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTCT
* * * *
3863616 AGTAATGATCTTCATTCATTTTGAGATTAGGAACTACAAA-GCATTCTCCTCATTATGATAAATG
195 AGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAAATG
** *
3863680 ATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTACCTTTAAATCAAAGTTC
260 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTC
** **
3863745 ATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGGCTGGGAAGCC
325 ATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCC
** * * *
3863810 AAAACACATTTACTTCCTTAGGATACAAGACATTAAGGCTTTGGTGTCGCAAGAAAAGCTTTTCT
390 AAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* *
3863875 TACCATCGTTTTTGATAGAATC
455 TTCCACCGTTTTTGATAGAATC
* * * * * * *
3863897 AAAGTTTGTCCCTTAAATATGAAAAACATGAACACTCATACTGATCCCCATTTTTTTTCAAGATT
1 AAAGTTT-ACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCA-TTCTTTTCAAGATT
* ** * * * * * *** *
3863962 TGGTGCCATAAACGTAGTCTTCTCCTAAGGATATA-GCATATTGATGCCCCGGTTTTGCAAGAAT
64 GGGCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAA
* * * * * * **
3864026 GGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCC-AAAAATAAGACAAACATGGAAT
129 GGCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAA-GAGACAAACATGGGTT
* * * * *
3864090 CTAGTAATGATCTTGATTCAATTT-GTATTAGGCACTATAAACA-ATTTCTCCTCTTTAGGATAA
193 CTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACA-TTCTCCTCTTTAGGATAA
* * * * * * **
3864153 TTGATATTAATGTTTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTTCGATAAATCAAAG
257 ATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAG
* * * * * *
3864218 TTCATACCTTAAATAAGACAAGCATCGCTCCTCATAACAGTCTTCATTCCTTTCAAGGTTGGGAA
322 TTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA
* * * *
3864283 GCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTGTGGTGTCACAAGAAAAGCTCT
387 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
*
3864348 TCTTTCCACCGTTTTTGATTGAATC
452 TCTTTCCACCGTTTTTGATAGAATC
* * * * * * *
3864373 AAAAATTTTCTCTTAAATACAACAAATGTGAAAACGT-AAACTGATCCTCATTCTTTTCAAGATT
1 -AAAGTTTACTCTTAAATACGACAAACGTGAATAC-TCATACTGATCCCCATTCTTTTCAAGATT
3864437 GGGCAC
64 GGGCAC
3864443 TAGAAAACAT
Statistics
Matches: 3663, Mismatches: 613, Indels: 155
0.83 0.14 0.03
Matches are distributed among these distances:
473 1 0.00
474 208 0.06
475 1163 0.32
476 1382 0.38
477 563 0.15
478 282 0.08
479 62 0.02
480 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
AAAGTTTACTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTGG
GCACCATAAACATAGTCTTCTCATTAGGATACACTCATATTGATGCTTTGGTTTTGCAAGAAAGG
CTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAAGAGACAAACATGGGTTCTA
GTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCTTTAGGATAAATGA
TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA
TACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA
AAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
TCCACCGTTTTTGATAGAATC
Found at i:3862774 original size:951 final size:947
Alignment explanation
Indices: 3859622--3864442 Score: 5932
Period size: 951 Copynumber: 5.1 Consensus size: 947
3859612 CAAAAGTTTA
* * * * *
3859622 TCTCTTAAATAAGACAAACCTGAATACTCATACTAATCCCTATTCTTTTCAAGATTTGGCACCAT
1 TCTCTTAAATAAGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
* * * *
3859687 AAACATAGTATTCTCATTGGGATACA-CGATATTGATGCTTTGGTTTCGCAAAAAATGCATTTTT
66 AAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTTT
* * * *
3859751 CTCACCAATTTTTGTAAAGTCTAAGTTCATACCACAAATGAGACAAATATGGGTTTTAGTAATGA
129 CTCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGA
* * * * *
3859816 TCTTCATTCATTTTGGGGTTAGGAACTGCAAACGAATTCTCTTCATTAGGATAAATGATATTGAT
194 TCTTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGAT
* * *
3859881 GATTTTCTTTTGCATAGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGTTCAGT-TCTT
259 GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA-TACCTT
* * *
3859945 AAAAAAGATAAGCATCGATTCTCGTAACATTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACAC
323 AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACAC
* * * * * * *
3860010 ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCGTAAGAAAAGCTTTTCTTTCCACC
388 ATTCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCATC
* * ** * * * * * *
3860075 GTTCTTGATAA-AATCAAAGTTTGT-AATTAAA-AAGACAAACATGAATATGTATACGAATCCCC
453 GTTTTTGA-AAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATCCCC
* * **
3860137 ATTCTTTTCAAGATTGGTCACCATAAAGATAGTCTTCTCATTTTGGATACATGATATTGAAGCTT
517 ATTCTTTTCAAGATTTG-CACCATAAACATAGTCTTCTCA-TTTGGATACGCGATATTGAAGCTT
* * * * ** * * *
3860202 TGGTTTTGCAAGAAAGGTTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGCGCCTCAAAAGC
580 TGGTTTTGCAAGAAATG-CTTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGA
* * * * * * *
3860267 GACAAACGTGGGTTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTC
644 GACAAACATGGGTTCTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTATAAACACTTTCTC
* * * *
3860332 CTCTTTAGGATAAATAATACTGATGATTTTCTTTTGCATC-GAAATCTTTTCTTT-CCCTTATTT
709 CTCTTTAGGATAAGTGATATTGATGACTTTCTTTTGCA-CAGAAATCTTTTCTTTGCCC-TATTT
* * * *
3860395 TCTTTCATAAATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTCGTAATAGTCTCCAAT
772 TCCTT--TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * * *
3860460 CTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTTATTAGGATACATGGCATTGATGCTTTGAT
835 CTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGT
* * * *
3860525 GTCAC-AAAGAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTG
900 G-C-CGTAAGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA-TTTT
* * * * *
3860575 TCTCTCAAATACA-ACAAACGTGAATACTCATTCTGATCCACATTCTTTTCAAGATTGGGCACCA
1 TCTCTTAAATA-AGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCA
* * * *
3860639 TAAACACAGTCCTCTCATTAGGATACA-CTATATTGATGCTTTGGTATCGCAAGAAATGCATTTT
65 TAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTTT
* * ** *
3860703 TC-CTACCAATTTTTGTAAAATCTAGGTTCATGCCTCAAAAAAGACAAACATGGATTCTAGTAAT
128 TCTC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAAT
** * * * * * * *
3860767 GATCTTCATTCATTTTCTGATTAGGCATTATAAACACATTCTCCTCTTTCGGATAAATGATATCG
192 GATCTTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTG
* * * *
3860832 ATGATTTTCTTCTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTCTAAATCAAAGTTTATACCT
257 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCT
* * *
3860897 TGAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCTAGATTGGGAAGCCAAAACA
322 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACA
* * * * * * *
3860962 TATTCCCTTCATTAGGATACAAGACATTGATGCTTTGATGTCACAAGAAAAGCTTTTCTTTCCAC
387 CATTCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCAT
* * * * *
3861027 CGTTTTCGAGAGAATCAAAGTTTGA-ATCTTAAATATGACAAACGTGAATACTCATACT-GATCC
452 CGTTTTTGAAAGAATCAAAGTTT-ATCTCTTAAATACGACAAACGTGAATACGCATA-TGGATCC
* * * * * ** * *
3861090 CCATTTTTTTCAAAATTTTGAGCACCATAAACATAATCTTTTCCTAAGGATGCATC-ATATTGAA
515 CCATTCTTTTCAAGA-TTT--GCACCATAAACATAGTCTTCTCATTTGGATAC-GCGATATTGAA
* * * * **
3861154 GCCTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAATTTTTGTAAACTCTATGTTAATGCCTCAA
576 GCTTTGGTTTTGCAAGAAATGCTTTTT-CTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAA
* * * * * * *
3861219 AATAGAC-AACATGGATTCCAGTAATGATCTTGATTCATTTTGTGG-TTTGGTACTATAAACACA
640 AAGAGACAAACATGGGTTCTAGTAATGATCTTGATTCAATTTG-GGATTAGGAACTATAAACACT
* *
3861282 TTCTCCTCTTTAGGATAATTGATATTGATGCCTTTCTTTT--ACATGAGAATCTTTTCTTTGCCC
704 TTCTCCTCTTTAGGATAAGTGATATTGATGACTTTCTTTTGCACA-GA-AATCTTTTCTTTGCCC
* * *
3861345 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACATGCATCGATTCTCATAACAGTCTCT
767 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * * * *
3861410 ATTCTTTTCAAGATTAGGAAG-CAAACACGCATTCCCTTCATTAGGATACATGACATTGATGCTT
832 ATTCTTTTCAAGGTTGGGAAGCCAAA-ACACATTCCCTTTATTAGGATACAAGACATTGATGCTT
* * * * *
3861474 TGGGGTCGTAAGGAAAGCTTTTCTTTCCATCACTTTTGATAGAATCAAAGTTTA
896 TGGTGCCGTAA-GAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA-TTTT
* * ** * * * *
3861528 TCTCTTAAATAAGACAAACCTGAATACTCATACCAATCCCCAATCTCTTCAGGATTTGGCACCAT
1 TCTCTTAAATAAGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
* * * * * *
3861593 -AACATAGTCTTCTCATTAGGGTACCTGATATTGATGCTTTGGTTTTGCAAAAAAGGTTTTTTTC
66 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTTTTC
* * * * * * *
3861657 CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACCAATATGGATTCTAGAAATGAT
130 TCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
* * * *
3861722 CTTCATTCATTTTGGGATTAGGAATTACAAATGCATTCTCCTCATTAGGATAAATAATATTGATG
195 CTTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATG
* * * *
3861787 ATTTT-TTTTCGCATGGAAATCTTTTTTTTGCCCTATTTTTCTTGAAATCAAAGTTCATGCCTTA
260 ATTTTCTTTT-GCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTA
*
3861851 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTATTTTCTTGATTGGGAAGCCAAAACACA
324 AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACA
* *
3861916 TTCCCTTTACTAAGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCATTG
389 TTCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCATCG
*
3861981 TTTTTGAAAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATGCCCAT
454 TTTTTGAAAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATCCCCAT
* * *
3862046 TCTTTTCTAGATTTGCACCGTAAACATAGTCTTCTCATTTGGATACGCGATGTTGAAGCTTTGGT
519 TCTTTTCAAGATTTGCACCATAAACATAGTCTTCTCATTTGGATACGCGATATTGAAGCTTTGG-
*
3862111 TTTTGCAAGAAATACATTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGAC
583 TTTTGCAAGAAATGC-TTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGAC
* *
3862176 AAACATGGGTTTTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTACAAACACTTTCTCCT-
647 AAACATGGGTTCTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTATAAACACTTTCTCCTC
** * * *
3862240 TAACAGGGTAAGTGGTATTGATGACTTTCTTTTGCACAGATATCTTTTCTTTGCCCTATTTTCCT
712 T-TTAGGATAAGTGATATTGATGACTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCT
* * * *
3862305 TTAAATAAAAGCTCATACCTTAAATAAGACAACCATCGATTCTTGTAACAGTCTCCATTCTTTTC
776 TTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTC
* * * **
3862370 AAGGTTGGGAAGCCAAAACACATTTCCTTTATTCGAATACAAGACATTGCGGCTTTGGTGCCGTA
841 AAGGTTGGGAAGCCAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGTGCCGTA
3862435 AGAAAGGCTTTTCTTTCCACCATTTTTGATAGAATCATAATTTT
906 AGAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCA-AATTTT
* * *
3862479 TCTCTTCAATATGACAAATGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
1 TCTCTTAAATAAGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
* * * **
3862544 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGTGAGAAAGGCTTTTTCA
66 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTC-
* *
3862609 TCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAAAGAT
130 TCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
*
3862674 CTTCATTCATTTTGAGATTAGGAACTACAAA-GCATTCTCCTCATTATGATAAATGATATTGATG
195 CTTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATG
* *
3862738 ATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTACCTTTAAATCAAAGTTCATACCTTAA
260 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAA
3862803 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACAT
325 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACAT
* *
3862868 TCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAATCTTTTCATTCCATTGT
390 TCCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCATCGT
* *
3862933 TTTTGATAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATGCCCATT
455 TTTTGAAAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATCCCCATT
* * *
3862998 CTTTTCTAGATTTGCACCGTAAACATAGTCTTCTCATTTGGATACGCGATGTTGAAGCTTTGGTT
520 CTTTTCAAGATTTGCACCATAAACATAGTCTTCTCATTTGGATACGCGATATTGAAGCTTTGG-T
*
3863063 TTTGCAAGAAATACATTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGACA
584 TTTGCAAGAAATGC-TTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGACA
* *
3863128 AACATGGGTTTTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTACAAACACTTTCTCCT-T
648 AACATGGGTTCTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTATAAACACTTTCTCCTCT
** * * *
3863192 AACAGGGTAAGTGGTATTGATGACTTTCTTTTGCACAGATATCTTTTCTTTGCCCTATTTTCCTT
713 -TTAGGATAAGTGATATTGATGACTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
3863257 TAAATAAAAGCTCATACCTTAAATAAGACAACCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
777 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCA
* * * **
3863322 AGGTTGGGAAGCCAAAACACATTTCCTTTATTCGAATACAAGACATTGCGGCTTTGGTGCCGTAA
842 AGGTTGGGAAGCCAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGTGCCGTAA
3863387 GAAAGGCTTTTCTTTCCACCATTTTTGATAGAATCATAATTTT
907 GAAA-GCTTTTCTTTCCACCATTTTTGATAGAATCA-AATTTT
* * * *
3863430 TCTCTTCAATATGACAAATGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCAGCACCAT
1 TCTCTTAAATAAGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
* * * **
3863495 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGTGAGAAAGGCTTTTTCA
66 AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTC-
*
3863560 TCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
130 TCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
*
3863625 CTTCATTCATTTTGAGATTAGGAACTACAAA-GCATTCTCCTCATTATGATAAATGATATTGATG
195 CTTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATG
* *
3863689 ATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTACCTTTAAATCAAAGTTCATACCTTAA
260 ATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAA
**
3863754 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGGCTGGGAAGCCAAAACACAT
325 ATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACAT
** * * *
3863819 TTAC-TTCCTTAGGATACAAGACATTAAGGCTTTGGTGTCGCAAGAAAAGCTTTTC-TTACCATC
390 TCCCTTTAC-TAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATT-CCATC
* * * * * * * *
3863882 GTTTTTGATAGAATCAAAGTTTGTCCCTTAAATATGAAAAACATGAACACTCATACT-GATCCCC
453 GTTTTTGAAAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATA-TGGATCCCC
* ** * * ** * * *
3863946 ATTTTTTTTCAAGATTTGGTGCCATAAACGTAGTCTTCTCCTAAGGATATAGC-ATATTGATGCC
517 A-TTCTTTTCAAGATTT-GCACCATAAACATAGTCTTCTCATTTGGATA-CGCGATATTGAAGCT
** * * * *
3864010 CCGGTTTTGCAAG-AATGGCTTTTTCCTCACCAAATTTTGAAAAGC-CTATGTTCATGCC-AAAA
579 TTGGTTTTGCAAGAAAT-GCTTTTT-CTCACCAAATTTTGTAAA-CTCTAAGTTCGTGCCTCAAA
* ** * * *
3864072 ATAAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTT-GTATTAGGCACTATAAACAATT
641 A-GAGACAAACATGGGTTCTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTATAAACACTT
* * ** * **
3864136 TCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTAT
705 TCTCCTCTTTAGGATAAGTGATATTGATGACTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTAT
* ** * * * *
3864201 TTTTCGATAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTCCTCATAACAGTCTTCATT
770 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
* * * *
3864266 CCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTGTGGT
835 CTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGT
* ** * * * *
3864331 GTCACAAGAAAAGCTCTTCTTTCCACCGTTTTTGATTGAATCAAAAATTT
900 GCCGTAAG-AAAGCTTTTCTTTCCACCATTTTTGATAGAATC-AAATTTT
* * * *
3864381 TCTCTTAAATACA-ACAAATGTGAAAACGT-AAACTGATCCTCATTCTTTTCAAGATTGGGCAC
1 TCTCTTAAATA-AGACAAACGTGAAAAC-TCATACTGATCCCCATTCTTTTCAAGATTCGGCAC
3864443 TAGAAAACAT
Statistics
Matches: 3423, Mismatches: 388, Indels: 116
0.87 0.10 0.03
Matches are distributed among these distances:
948 1 0.00
949 38 0.01
950 64 0.02
951 1792 0.52
952 639 0.19
953 645 0.19
954 10 0.00
955 141 0.04
956 74 0.02
957 18 0.01
958 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (947 bp):
TCTCTTAAATAAGACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTCGGCACCAT
AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCT
CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGATC
TTCATTCATTTTGAGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAA
TAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACATT
CCCTTTACTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCATTCCATCGTT
TTTGAAAGAATCAAAGTTTATCTCTTAAATACGACAAACGTGAATACGCATATGGATCCCCATTC
TTTTCAAGATTTGCACCATAAACATAGTCTTCTCATTTGGATACGCGATATTGAAGCTTTGGTTT
TGCAAGAAATGCTTTTTCTCACCAAATTTTGTAAACTCTAAGTTCGTGCCTCAAAAGAGACAAAC
ATGGGTTCTAGTAATGATCTTGATTCAATTTGGGATTAGGAACTATAAACACTTTCTCCTCTTTA
GGATAAGTGATATTGATGACTTTCTTTTGCACAGAAATCTTTTCTTTGCCCTATTTTCCTTTAAA
TCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGGT
TGGGAAGCCAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGTGCCGTAAGAAA
GCTTTTCTTTCCACCATTTTTGATAGAATCAAATTTT
Found at i:3864713 original size:793 final size:794
Alignment explanation
Indices: 3863621--3865867 Score: 3741
Period size: 793 Copynumber: 2.8 Consensus size: 794
3863611 GTTCTAGTAA
* * * * * *
3863621 TGATCTTCATTCATTTT-GAGATTAGGAACTACAAAGCATTCTCCTCATTAT-GATAAATGATAT
1 TGATCCTCATTC-TTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATT-TGGATAAATGATAT
* *
3863684 TGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTACCTTTAAATCAAAGTTCATAC
64 TGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATAC
*
3863749 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGGCTGGGAAGCCAAAA
129 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAA
* * *
3863814 CACATTTACTTCCTTAGGATACAAGACATTAAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTACC
194 CACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
*
3863879 ATCGTTTTTGATAGAATCAAAGTTTGTCCCTTAAATATGAAAAACATGAACACTCATACTGATCC
259 ATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCATACTGATCC
* *
3863944 CCATTTTTTTTCAAGATTTGGTGCCATAAACGTAGTCTTCTCCTAAGGATATAGCATATTGATGC
324 CCATTTTTTTTCAAGATTTGGCGCCATAAACGTAGTCTTCTCCTAAGGATACAGCATATTGATGC
* *
3864009 CCCGGTTTTGCAAGAATGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAAT
389 CTCGGTTTTGCAAGAAAGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAAT
*
3864074 AAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGT-ATTAGGCACTATAAACAATTTC
454 GAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTC
*
3864138 TCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTT
519 TCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
* * * *
3864203 TTCGATAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTCCTCATAACAGTCTTCATTCC
584 TCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTCTCATAACAGTCTCCATTCC
*
3864268 TTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTGTGGTGT
649 TTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGGTACAAGACATTGATGCTGTGGTGT
*
3864333 CA-CAAGAAAAGCTCTTCTTTCCACCGTTTTTGATTGAATCAAAAATTTTCTCTTAAATACAACA
714 -AGCAAGAAAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATACAACA
3864397 AATGTGAAAACGTAAAC
778 AATGTGAAAACGTAAAC
3864414 TGATCCTCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTG
1 TGATCCTCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTG
* *
3864479 TTGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGCTCATACCT
66 ATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCT
*
3864544 TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAACA
131 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAACA
*
3864609 CATTCACTTCCTTAGGATATAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
196 CATTCACTTCCTTAGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
* * * *
3864674 CATTTTTGATAAAATCAAAGTTTGTCTCTTAAGTATGAAAAACATGAACACTCATACTGATCCCT
261 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCATACTGATCCCC
* * *
3864739 ATTATTTTTCAAGATTTCGCGCCATAAACGCAGTCTTCTCCTAAGGATACAGCATATTGATGCCT
326 ATTTTTTTTCAAGATTTGGCGCCATAAACGTAGTCTTCTCCTAAGGATACAGCATATTGATGCCT
3864804 CGGTTTTGCAAGAAAGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAATGA
391 CGGTTTTGCAAGAAAGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAATGA
3864869 GACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTC
456 GACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTC
3864934 CTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
521 CTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
*
3864999 CGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGCTTCTCATAACAGTCTCCATTCCTT
586 CGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTCTCATAACAGTCTCCATTCCTT
* *
3865064 TCATGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGGTACAAGACATTGATGCTTTGGTGTAG
651 TCAAGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGGTACAAGACATTGATGCTGTGGTGTAG
* **
3865129 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAAT
716 CAAGAAAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATACAACAAAT
3865194 GTGAAAACGTAAAC
781 GTGAAAACGTAAAC
* *
3865208 TGATCCCCATTCTTGTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTG
1 TGATCCTCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTG
3865273 ATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCC-TCTAAATCAAAGTTCATACC
66 ATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTC-AAATCAAAGTTCATACC
* * * * * *
3865337 TTAAATAAAATAAGAATCAATTCTCGTAACAGTCTCTATTCTTTTCTTGACTAGGAAGCCAAAAC
130 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAAC
* *
3865402 ACATTCACTTCCTTAGGATACAAGACACTAATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCA
195 ACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * *
3865467 TTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAACACTCATTCTGATCCC
260 TCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCATACTGATCCC
* * * * **
3865532 CA-TTTTTTTCAAGATTGGGCACCATAAACATAGTGTTCTCCTAAACATACAGCATATTGATGCC
325 CATTTTTTTTCAAGATTTGGCGCCATAAACGTAGTCTTCTCCTAAGGATACAGCATATTGATGCC
* * * * * *
3865596 TTGGTTTTGCGAGAAAGGCTCTTTCCTCACCAACTTTTGAAAAGCCTATATTCATGCCTAAAATG
390 TCGGTTTTGCAAGAAAGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAATG
* * *
3865661 AGACAAACATAGAATCTAGTAATGATTTTGATTCAATTTGTGATTAGGGACTATAAACAATTTCT
455 AGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCT
* *
3865726 CCTCTTTATGATAATTGATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
520 CCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT
* *
3865791 CCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTTTCATAACAGTCTCCATTCTT
585 CCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTCTCATAACAGTCTCCATTCCT
*
3865856 TTCAAGATTGGG
650 TTCAAGGTTGGG
3865868 CACTAGAAAA
Statistics
Matches: 1361, Mismatches: 88, Indels: 10
0.93 0.06 0.01
Matches are distributed among these distances:
792 5 0.00
793 771 0.57
794 585 0.43
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (794 bp):
TGATCCTCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTG
ATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGTTCATACCT
TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAACA
CATTCACTTCCTTAGGATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAT
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATGAACACTCATACTGATCCCC
ATTTTTTTTCAAGATTTGGCGCCATAAACGTAGTCTTCTCCTAAGGATACAGCATATTGATGCCT
CGGTTTTGCAAGAAAGGCTTTTTCCTCACCAAATTTTGAAAAGCCTATGTTCATGCCAAAAATGA
GACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTC
CTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTC
CGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTCTCATAACAGTCTCCATTCCTT
TCAAGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGGTACAAGACATTGATGCTGTGGTGTAG
CAAGAAAAGCTCTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATACAACAAAT
GTGAAAACGTAAAC
Found at i:3864735 original size:317 final size:318
Alignment explanation
Indices: 3864135--3864754 Score: 804
Period size: 317 Copynumber: 2.0 Consensus size: 318
3864125 TATAAACAAT
* * *
3864135 TTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTA
1 TTCTCCTCTTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * *
3864200 TTTTTCGATAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTCCTCATAACAGTCTTCAT
66 TTTTTCCATAAATCAAAGCTCATACCTTAAATAAGACAAGCATCGATCCTCATAACAGTCTCCAT
** * * *
3864265 TCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTGTGG
131 TCCTTTCAAGACTGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGACATTAATGCTGTGG
* **
3864330 TGTCACAAGAAAAGCTCTTCTTTCCACCGTTTTTGATTGAATCAAAAATTTTCTCTTAAATACAA
196 TGTCACAAGAAAAGCTCTTCTTTCCACCATTTTTGATAAAATCAAAAATTTTCTCTTAAATACAA
**
3864395 CAAATGTGAAAACGTAAACTGAT-CCTCATT-CTTTTCAAGATTGGGCACTAGAAAACA
261 CAAACATGAAAACGTAAACTGATCCCT-ATTACTTTTCAAGATTGGGCACTAGAAAACA
** *
3864452 TTCTCCTCATTT-GGATAAATGATATTGTTGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCT
1 TTCTCCTC-TTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* *
3864516 A-TTTTCCTTCAAATCAAAGCTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
65 ATTTTTCCAT-AAATCAAAGCTCATACCTTAAATAAGACAAGCATCGATCCTCATAACAGTCTCC
* ** * * *
3864580 ATTCTTTTCTTGACTGGGAAGCCAAAACACATTCACTTCCTTAGGATATAAGACATTAATGCTTT
129 ATTCCTTTCAAGACTGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGACATTAATGCTGT
* * * * *
3864645 GGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAAAATC-AAAGTTTGTCTCTTAAGTA
194 GGTGTCACAAGAAAAGCTCTTCTTTCCACCATTTTTGATAAAATCAAAAATTT-TCTCTTAAATA
* * * *
3864709 TGAA-AAACATGAACAC-TCATACTGATCCCTATTATTTTTCAAGATT
258 -CAACAAACATGAAAACGT-AAACTGATCCCTATTACTTTTCAAGATT
3864755 TCGCGCCATA
Statistics
Matches: 259, Mismatches: 37, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
316 13 0.05
317 227 0.88
318 19 0.07
ACGTcount: A:0.30, C:0.20, G:0.13, T:0.37
Consensus pattern (318 bp):
TTCTCCTCTTTAGGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
TTTTTCCATAAATCAAAGCTCATACCTTAAATAAGACAAGCATCGATCCTCATAACAGTCTCCAT
TCCTTTCAAGACTGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGACATTAATGCTGTGG
TGTCACAAGAAAAGCTCTTCTTTCCACCATTTTTGATAAAATCAAAAATTTTCTCTTAAATACAA
CAAACATGAAAACGTAAACTGATCCCTATTACTTTTCAAGATTGGGCACTAGAAAACA
Found at i:3865530 original size:317 final size:316
Alignment explanation
Indices: 3864929--3866187 Score: 1081
Period size: 317 Copynumber: 4.0 Consensus size: 316
3864919 TATAAACAAT
* * *
3864929 TTCTCCTC-TTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
1 TTCTCCTCATTT-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* *** *
3864993 ATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGCTTCTCATAACAGTCTCCA
65 ATTTTCC-TTAAATCAAAGTTCATACCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCTCCA
* * ** * * * * * *
3865058 TTCCTTTCATGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGGTACAAGACATTGATGCTTTG
129 TTCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTTTG
* * *
3865123 GTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTT-TCTCTTAAATAT
194 GTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATAT
* ** * *
3865187 GACAAATGTGAAAACGT-AAACTGATCCCCATTCTTGTCAAGATTGGGCACTAGAAAACA
258 GAAAAACATGAAAAC-TCATACTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACA
*
3865246 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTA
1 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * *
3865311 TTTTCCTCTAAATCAAAGTTCATACCTTAAATAAAATAAGAATCAATTCTCGTAACAGTCTCTAT
66 TTTTCCT-TAAATCAAAGTTCATACCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCTCCAT
* *
3865376 TCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACACTAATGCTTTTG
130 TCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGG
* *
3865441 TGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGA
195 TGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGA
* * * * * *
3865506 AAAACAAGAACACTCATTCTGATCCCCATTTTTTTCAAGATTGGGCACCA-TAAACA
260 AAAACATGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACA
* * * **** * ** ** * *
3865562 TAGTGTTCTCCTAAACATACA-GCATATTGATGCCTTGGTTTTGC--GAGAAAGGCTCTTTC-CT
1 T--TCTCCTCATTTGGATAAATG-ATATTGATGATTTTCTTTTGCATG-GAAA-TCT-TTTCTTT
* ** * * * * * * *
3865623 -CACCAACTTTT--GAAAAGCCTATA-TTCATGCCTAAAATGAGACAA-ACAT-AGAATCTAGTA
60 GC-CCTA-TTTTCCTTAAA-TC-AAAGTTCATACCTTAAATAAGACAAGA-ATCA-ATTCTCGTA
* * ** * * * * * * * * * *
3865682 A-TGATTTTGATTCAATTT-GTGATTAGGGA-CTATAAACA-ATTTCTCCTCTTTATGATA-ATT
119 ACAG-TCTCCATTC-TTTTCTTGACTAGGAAGCCA-AAACACA-TTCACTTCCTTAGGATACA-A
* ** ** * * * * * * * *
3865742 GATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT-ATTTTCCGTTA-AATCAAAG
179 GACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT-CCATCGTTTT-TGATAGAATCAAAG
** * * * **** * *
3865805 TTCATAC-CTTAAATAAGACAAGCATCG-CTTTTCATAACAG-TCTCCATTCTTTTCAAGATTGG
242 TTTGT-CTCTTAAATATGAAAAACAT-GAAAACTCAT-ACTGATCCCCATTCTTTTCAAGATTGG
3865867 GCACTAGAAAACA
304 GCACTAGAAAACA
**
3865880 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAACCTA
1 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * * *
3865945 TTTTCCTTTAAATCAAAGTTCATACCTTAAATGAGACAAGCATCGATTCTCGTAATAGTCTCCAT
66 TTTTCC-TTAAATCAAAGTTCATACCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCTCCAT
3866010 TCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGG
130 TCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGG
* *
3866075 TGTTGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGA
195 TGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGA
* * *
3866140 AAAACATTAAAACTCATACTAATCCCCATTTTTTTCAAGATTGGGCAC
260 AAAACATGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCAC
3866188 CATAAACATA
Statistics
Matches: 717, Mismatches: 177, Indels: 96
0.72 0.18 0.10
Matches are distributed among these distances:
315 8 0.01
316 72 0.10
317 563 0.79
318 66 0.09
319 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (316 bp):
TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
TTTTCCTTAAATCAAAGTTCATACCTTAAATAAGACAAGAATCAATTCTCGTAACAGTCTCCATT
CTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTTTGGT
GTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAA
AAACATGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACA
Found at i:3865935 original size:158 final size:158
Alignment explanation
Indices: 3865722--3866016 Score: 459
Period size: 158 Copynumber: 1.9 Consensus size: 158
3865712 TATAAACAAT
* * **
3865722 TTCTCCTCTTTATGATAATTGATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
1 TTCTCCTCTTTAGGATAAATGATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTAACCTA
* *
3865787 TTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTTTCATAACAGTCTCCAT
66 TTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAT
3865852 TCTTTTCAAGATTGGGCACTAGAAAACA
131 TCTTTTCAAGATTGGGCACTAGAAAACA
*
3865880 TTCTCCTCATTT-GGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTAACC
1 TTCTCCTC-TTTAGGATAAATGATATTAAT-ATTTTTCTTTTGCATGGAAATCTTTTCTTTAACC
* * * *
3865943 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATGAGACAAGCATCGATTCTCGTAATAGTCTCC
64 TATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
3866008 ATTCTTTTC
129 ATTCTTTTC
3866017 TTGACTAGGA
Statistics
Matches: 124, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
158 120 0.97
159 4 0.03
ACGTcount: A:0.28, C:0.19, G:0.11, T:0.42
Consensus pattern (158 bp):
TTCTCCTCTTTAGGATAAATGATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTAACCTA
TTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCAT
TCTTTTCAAGATTGGGCACTAGAAAACA
Found at i:3866051 original size:634 final size:634
Alignment explanation
Indices: 3865214--3866493 Score: 2139
Period size: 634 Copynumber: 2.0 Consensus size: 634
3865204 AAACTGATCC
*
3865214 CCATTCTTGTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGATGATT
1 CCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGATGATT
* **
3865279 TTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTTCCTCTAAATCAAAGTTCATACCTTAAATA
66 TTCTTTTGCATGGAAATCTTTTCTTTAACCTATTTTCCTCTAAATCAAAGTTCATACCTTAAATA
* *
3865344 AAATAAGAATCAATTCTCGTAACAGTCTCTATTCTTTTCTTGACTAGGAAGCCAAAACACATTCA
131 AAACAAGAATCAATTCTCGTAACAGTCTCCATTCTTTTCTTGACTAGGAAGCCAAAACACATTCA
* **
3865409 CTTCCTTAGGATACAAGACACTAATGCTTTTGTGTCGCAAGAAAAGCTTTTCTTTCCATTGTTTT
196 CTTCCTTAGGATACAAGACACTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTT
* * *
3865474 TGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAACACTCATTCTGATCCCCATTTTT
261 TGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAAAACTCATACTAATCCCCATTTTT
* *
3865539 TTCAAGATTGGGCACCATAAACATAGTGTTCTCCTAAACATACAGCATATTGATGCCTTGGTTTT
326 TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAACATACAGCATATTGATGCCTTGATTTT
* *
3865604 GCGAGAAAGGCTCTTTCCTCACCAACTTTTGAAAAGCCTATATTCATGCCTAAAATGAGACAAAC
391 GCAAGAAAGGCTCTTTCCTCACCAACTTTTGAAAAGCCTATATTCACGCCTAAAATGAGACAAAC
* * *
3865669 ATAGAATCTAGTAATGATTTTGATTCAATTTGTGATTAGGGACTATAAACAATTTCTCCTCTTTA
456 ATAGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTC-CTA
* *
3865734 -TGATAATTGATATTAATATTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAA
520 GGGATAATTGATATTAATATTTTTCTCTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAA
* *
3865798 ATCAAAGTTCATACCTTAAATAAGACAAGCATCGCTTTTCATAACAGTCT
585 ATCAAAGTTCATACATTAAATAAGACAAGCATCGCTTCTCATAACAGTCT
3865848 CCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGATGATT
1 CCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGATGATT
* *
3865913 TTCTTTTGCATGGAAATCTTTTCTTTAACCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATG
66 TTCTTTTGCATGGAAATCTTTTCTTTAACCTATTTTCCTCTAAATCAAAGTTCATACCTTAAATA
* * * *
3865978 AGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCTTGACTAGGAAGCCAAAACACATTCA
131 AAACAAGAATCAATTCTCGTAACAGTCTCCATTCTTTTCTTGACTAGGAAGCCAAAACACATTCA
* * *
3866043 CTTCCTTAGGATACAAGACATTAATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCATTTT
196 CTTCCTTAGGATACAAGACACTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTT
**
3866108 TGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACATTAAAACTCATACTAATCCCCATTTTT
261 TGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAAAACTCATACTAATCCCCATTTTT
**
3866173 TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACAGCATATTGATGCCTTGATTTT
326 TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAACATACAGCATATTGATGCCTTGATTTT
* * * * *
3866238 GCAAGAAAGGCTTTTTCCTCACTAATTTTTGAAAAGCCTATGTTCACGCCTAAAATGAGACAAAT
391 GCAAGAAAGGCTCTTTCCTCACCAACTTTTGAAAAGCCTATATTCACGCCTAAAATGAGACAAAC
*
3866303 ATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCCTAG
456 ATAGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCCTAG
*
3866368 GGATAATTGATATTAATTTTTTTCTCTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAA
521 GGATAATTGATATTAATATTTTTCTCTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAA
*
3866433 TCAAAGTTCATACATTAAATAAGATAAGCATCGCTTCTCATAACAGTCT
586 TCAAAGTTCATACATTAAATAAGACAAGCATCGCTTCTCATAACAGTCT
*
3866482 CCATTCCTTTCA
1 CCATTCTTTTCA
3866494 TGGTTAGGAA
Statistics
Matches: 600, Mismatches: 45, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
633 2 0.00
634 598 1.00
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (634 bp):
CCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGATGATT
TTCTTTTGCATGGAAATCTTTTCTTTAACCTATTTTCCTCTAAATCAAAGTTCATACCTTAAATA
AAACAAGAATCAATTCTCGTAACAGTCTCCATTCTTTTCTTGACTAGGAAGCCAAAACACATTCA
CTTCCTTAGGATACAAGACACTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTT
TGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAACAAGAAAACTCATACTAATCCCCATTTTT
TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAACATACAGCATATTGATGCCTTGATTTT
GCAAGAAAGGCTCTTTCCTCACCAACTTTTGAAAAGCCTATATTCACGCCTAAAATGAGACAAAC
ATAGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCCTAG
GGATAATTGATATTAATATTTTTCTCTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAA
TCAAAGTTCATACATTAAATAAGACAAGCATCGCTTCTCATAACAGTCT
Found at i:3866612 original size:476 final size:473
Alignment explanation
Indices: 3864433--3866776 Score: 1599
Period size: 476 Copynumber: 4.9 Consensus size: 473
3864423 TTCTTTTCAA
* * * * * ** *
3864433 GATTGGGCACTAGAAA-ACATTCTCCTCATTTGGATAAATGATATTGTTGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACACATTCTCCTC-CTAGGATAATTGATATTAATGTTTTTCTTTTGCATG
* *
3864497 GGAATCTTTTCTTTGCCCTATTTTCC-TTCAAATCAAAGCTCATACCTTAAATAAGACAAGCATC
65 GAAATCTTTTCTTTGCCCTATTTTCCGTT-AAATCAAAGTTCATACCTTAAATAAGACAAGCATC
* * *
3864561 GATTCTCATAACAGTCTCCATTCTTTTCTTGACTGGGAAGCCAAAACACATTCACTTCCTTAGGA
129 GCTTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAAAACACATTCACTTCCTTAGGA
* * *
3864626 TATAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTGATAAAATCA
194 TACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-TCATTTTTGATAGAATCA
* * * * *
3864691 AAGTTTGTCTCTTAAGTATGAAAAACATGAACACTCATACTGATCCCTATTATTTTTCAAGATTT
258 AAATTT-TCTCTTAAATATGAAAAACATGAAAACTCATACTGATCCCCATT-TTTTTCAAGATTG
* * ** * * *
3864756 CGCGCCATAAACGCAGTCTTCTCCTAAGGATACA-GCATATTGATGCCTCGGTTTTGCA-AGAAA
321 GGCACCATAAACATAGTCTCCTCCTAAGGATACATG-ATATTGATGCCTTGCTTTTGCATAGAAA
* * * * * * *
3864819 GGCTTTT-TCCT-CACCAAATTT-TGAAAAGCCTATGTTCATGCCAAAAATGAGACAAACATGGA
385 -GCTTTTCT-CTGCA-CTATTTTCTGAAAA-CCAAAGTTCATACCTAAAATAAGACAAACATGGA
*
3864881 ATCTAGTAA-TGATCTTGATTCAATTT-GT
446 ATCTAGTAACAG-TCTTGATTC-ATTTCGT
*
3864909 GATTAGGCACTATAAACA-ATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCAT
1 GATTAGGCACTATAAACACA-TTCTCCTC-CTAGGATAATTGATATTAATGTTTTTCTTTTGCAT
*
3864973 GGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATT
64 GGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
* * * * * *
3865038 GCTTCTCATAACAGTCTCCATTCCTTTCATGGTTGGGAAGCCAAAACACATTCCCTTCATCAGGG
129 GCTTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAAAACACATTCACTTCCTTAGGA
* * *
3865103 TACAAGACATTGATGCTTTGGTGTAGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA
194 TACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-TCATTTTTGATAGAATC-
* ** * * *
3865168 AAAATTTTCTCTTAAATATGACAAATGTGAAAACGT-AAACTGATCCCCATTCTTGTCAAGATTG
257 AAAATTTTCTCTTAAATATGAAAAACATGAAAAC-TCATACTGATCCCCATTTTTTTCAAGATTG
* * * ** * ** * * *
3865232 GGCACTAGAAAACAT--TCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGGAA
321 GGCACCA-TAAACATAGTCTCCTCCTAAGGATACATGATATTGATGCCTTGCTTTTGCATAGAAA
* * * ** * * * * *
3865295 TCTTTTCTTTGCCCTATTTTCCTCTAAATCAAAGTTCATACCTTAAATAAAATAAGA-AT-CAAT
385 GCTTTTCTCTGCACTATTTT-CTGAAAACCAAAGTTCATACCTAAAATAAGACAA-ACATGGAA-
* * *
3865358 TCTCGTAACAGTCTCT-ATTCTTTTCTT
447 TCTAGTAACAGTCT-TGATTCATTTCGT
* * * * * * * * * * * *
3865385 GACTAGGAAGCCA-AAACACATTCACTTCCTTAGGATACA-AGACACTAATGCTTTTGTGTCGCA
1 GATTAGGCA-CTATAAACACATTCTCCTCC-TAGGATA-ATTGATATTAATGTTTTTCTTTTGCA
* * * * ** * ** * * *
3865448 AGAAAAGCTTTTCTTT-CCAT-TGTTTTTGATAGAATCAAAGTTTGT-CTCTTAAATATGAAAAA
63 TGGAAATCTTTTCTTTGCCCTAT-TTTCCGTTA-AATCAAAGTTCATAC-CTTAAATAAGACAAG
* * * * * * * * * *
3865510 CA-AGAAC-ACTCAT-TCTGATCCCCATTTTTTTCAAGATTGGGCA-CCATAAACATAGTGT-TC
125 CATCG--CTTCTCATAACAG-TCTCCATTCTTTTCATGATTGGGAAGCCA-AAACACA-T-TCAC
* ** * * * * * * * *
3865570 -TCCTAAACATAC-AGCATATTGATGCCTTGGTTTTGCGAGAAAGGCTCTTTC-CTCAC-CAACT
184 TTCCTTAGGATACAAG-ACATTGATGCTTTGGTGTCGCAAGAAAAGCT-TTTCTTTC-CTC-ATT
* ** * * * * ***
3865631 TTTGA-A-AAGC-CTATATTCATGCCTAAA-ATGAGACAAACAT-AGAA-TCTAGTAATGATTTT
245 TTTGATAGAATCAAAATTTTC-T-CTTAAATATGA-A-AAACATGAAAACTC-A-TACTGATCCC
* ** ** * * * * * *
3865690 GATTCAATTT-GTGATTAGGG-ACTATAAACA-ATTTCTCCTCTTTATGATA-ATTGATATTAAT
304 CATT-TTTTTCAAGATT-GGGCACCATAAACATA-GTCTCCTCCTAAGGATACA-TGATATTGAT
*** * * * * * * * * *
3865751 ATTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTA
365 GCCTTGCTTTTGCATAGAAAGCTTTTCTCTGCACTATTTTCTG-AAAACCAAAGTTCATACCTAA
* * ** * ** * **
3865816 AATAAGACAAGCATCGCTTTTCA-TAACAGTCTCCATTCTTTTCAA
429 AATAAGACAAACATGGAATCT-AGTAACAGTCTTGATTCATTTCGT
* * * * * * *
3865861 GATTGGGCACTAGAAA-ACATTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATG
1 GATTAGGCACTATAAACACATTCTCCTC-CTAGGATAATTGATATTAATGTTTTTCTTTTGCATG
** * *
3865925 GAAATCTTTTCTTTAACCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATGAGACAAGCATCG
65 GAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCG
* * * * * *
3865990 ATTCTCGTAATAGTCTCCATTCTTTTCTTGACTAGGAAGCCAAAACACATTCACTTCCTTAGGAT
130 CTTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAAAACACATTCACTTCCTTAGGAT
* * *
3866055 ACAAGACATTAATGCTTTGGTGTTGCAATAAAAGCTTTTCTTTCCATCATTTTTGATAGAATCAA
195 ACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-TCATTTTTGATAGAATCAA
* * *
3866120 AGTTTGTCTCTTAAATATGAAAAACATTAAAACTCATACTAATCCCCATTTTTTTCAAGATTGGG
259 AATTT-TCTCTTAAATATGAAAAACATGAAAACTCATACTGATCCCCATTTTTTTCAAGATTGGG
* *
3866185 CACCATAAACATAGTCTTCTCCTAAGGATACA-GCATATTGATGCCTTGATTTTGCA-AGAAAGG
323 CACCATAAACATAGTCTCCTCCTAAGGATACATG-ATATTGATGCCTTGCTTTTGCATAGAAA-G
* * ** * *
3866248 CTTTT-TCCT-CACTAATTTT-TGAAAAGCCTATGTTCACGCCTAAAATGAGACAAATATGGAAT
386 CTTTTCT-CTGCACT-ATTTTCTGAAAA-CCAAAGTTCATACCTAAAATAAGACAAACATGGAAT
*
3866310 CTAGTAA-TGATCTTGATTCAATTT-GT
448 CTAGTAACAG-TCTTGATTC-ATTTCGT
* *
3866336 GATTAGGCACTATAAACA-ATTTCTCCTCCTAGGGATAATTGATATTAATTTTTTTCTCTTGCAT
1 GATTAGGCACTATAAACACA-TTCTCCTCCTA-GGATAATTGATATTAATGTTTTTCTTTTGCAT
* *
3866400 GGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACATTAAATAAGATAAGCATC
64 GGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
* * * * * *
3866465 GCTTCTCATAACAGTCTCCATTCCTTTCATGGTTAGGAAGCCAAAACACATTCCCTTCATTAGGG
129 GCTTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAAAACACATTCACTTCCTTAGGA
*
3866530 TACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCTGCATTTTTGATAGAATCA
194 TACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCT-CATTTTTGATAGAATC-
* * * ** * * *
3866595 AAAAATTTCTTTTAAATATGACAAATGTGAAAACGT-AAACTGATCCCCATTCTTTTCAAGAATG
257 AAAATTTTCTCTTAAATATGAAAAACATGAAAAC-TCATACTGATCCCCATTTTTTTCAAGATTG
* * * ** * ** * * *
3866659 GGCACTAGAAAACAT--TCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGGAA
321 GGCACCA-TAAACATAGTCTCCTCCTAAGGATACATGATATTGATGCCTTGCTTTTGCATAGAAA
* * * ** * * *
3866722 TCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAACTTAAATAAGACAA
385 GCTTTTCTCTGCACTATTTT-CTGAAAACCAAAGTTCATACCTAAAATAAGACAA
3866777 GGATCGATTG
Statistics
Matches: 1421, Mismatches: 347, Indels: 200
0.72 0.18 0.10
Matches are distributed among these distances:
472 6 0.00
473 6 0.00
474 31 0.02
475 338 0.24
476 717 0.50
477 302 0.21
478 19 0.01
479 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (473 bp):
GATTAGGCACTATAAACACATTCTCCTCCTAGGATAATTGATATTAATGTTTTTCTTTTGCATGG
AAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGC
TTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAAAACACATTCACTTCCTTAGGATA
CAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCATTTTTGATAGAATCAAAA
TTTTCTCTTAAATATGAAAAACATGAAAACTCATACTGATCCCCATTTTTTTCAAGATTGGGCAC
CATAAACATAGTCTCCTCCTAAGGATACATGATATTGATGCCTTGCTTTTGCATAGAAAGCTTTT
CTCTGCACTATTTTCTGAAAACCAAAGTTCATACCTAAAATAAGACAAACATGGAATCTAGTAAC
AGTCTTGATTCATTTCGT
Found at i:3867508 original size:316 final size:317
Alignment explanation
Indices: 3866935--3867527 Score: 870
Period size: 316 Copynumber: 1.9 Consensus size: 317
3866925 ATATTAATGC
* *
3866935 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCGGTTAAATCAAAGTTCATACCTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATAACTTAAA
* * *** *
3867000 TAAGACAAGCATTGCTTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGGAAGCCAAAACACATT
66 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGACGGGGAAGCCAAAACACAAT
* * *
3867065 CCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTT
131 CACTTCATTAGGATACAAGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTT
*
3867130 TTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTAAACTGATCCCCATTC
196 TTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAAAGTGAAAACGTAAACTGATCCCCATTC
3867195 TTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGACCA
261 TTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGACCA
* *
3867252 TTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTA-TTTCCTTTAAATCAAAGTTCATAACTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATAACTTAAA
* * * **
3867316 TAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACGGGGAAGCCAAAACACAAT
66 TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGACGGGGAAGCCAAAACACAAT
* * ** **
3867381 CACTTCCTTAGGATACAGGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCATTGTT
131 CACTTCATTAGGATACAAGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTT
* * * *
3867446 TTTGATAGAATC-AAAGTTTGTCTCTTAAATATGA-AAAAGATGAACAC-TCATACTGGTCCCCA
196 TTTGATAGAATCAAAAATTT-TCTCTTAAATATGACAAAAG-TGAAAACGT-AAACTGATCCCCA
3867508 TTCTTTTCAAGATTGGGCAC
258 TTCTTTTCAAGATTGGGCAC
3867528 CATAAACATA
Statistics
Matches: 244, Mismatches: 29, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
315 11 0.05
316 200 0.82
317 33 0.14
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (317 bp):
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATAACTTAAA
TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCCTTTCAAGACGGGGAAGCCAAAACACAAT
CACTTCATTAGGATACAAGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTT
TTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAAAGTGAAAACGTAAACTGATCCCCATTC
TTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATATTGACCA
Found at i:3868301 original size:316 final size:317
Alignment explanation
Indices: 3867699--3868359 Score: 771
Period size: 316 Copynumber: 2.1 Consensus size: 317
3867689 AAACAATTTA
* * * *
3867699 TCCTC-TTTAGGATAATTAATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTGTT
1 TCCTCATTT-GGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTATT
* * * * * * * * *
3867763 TTATGTTAAATTAAAGTTCATACCTTAAATAAGACGAACATTGCTTCTCATAATAGTTTCCATTC
65 TTATGTTAAATCAAAGTTCATACATTAAATAACACAAACATCGATTCCCATAACAGTCTCCATTC
* * * * *
3867828 CTTTCAAGGTTGGGACGCCAAAACACTTTCCCTTTATTAGGGTACAAGACATTGATGCTTTGGTG
130 CTTTCAAGATTAGGAAGCCAAAACACATTCCCTTTATTAGGGTACAAGACATTAATGCTTTGGTG
* *
3867893 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACA
195 TCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTCAAATACGACA
* * *
3867958 AATGTGAAAACGTAAATTGATCCCCATTCTTT-TCAAGATTGGGCACTAGAAAGCAT-TC
260 AACGTGAAAACGTAAACTGATCCCCATT-TTTGTCAAGATTGGGCACCAGAAA-CATATC
* * * *
3868016 TCCTCATTTGGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATCTTTTCTTTGCCTTATTT
1 TCCTCATTTGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTATTT
* * * *
3868081 TCTTTTAAATCAAAGTTCATTCATT-AATAACACAAACATCGATTCCCGTAACAGTCTCCACTT-
66 TATGTTAAATCAAAGTTCATACATTAAATAACACAAACATCGATTCCCATAACAGTCTCCA-TTC
* ** * *
3868144 TTTTCTTGATTAGGAAGCCAAAACACATTCCCTTTATT-GGGATACATGACATTAATGTTTTGGT
130 CTTTCAAGATTAGGAAGCCAAAACACATTCCCTTTATTAGGG-TACAAGACATTAATGCTTTGGT
* * * ** *
3868208 GTCACAAGAAATGTTTTTCTTTCTGCCGTTTTTGATAGAATC-AAAGTTTGTCTCTCAAATACGA
194 GTCACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAAATTT-TCTCTCAAATACGA
*
3868272 CAAACGTGAAAAC-TAATACTGATCCCCATTTTTGTCAAGATTGGGCACCATAAACATAGTC
258 CAAACGTGAAAACGTAA-ACTGATCCCCATTTTTGTCAAGATTGGGCACCAGAAACATA-TC
** * *
3868333 TTATCATTTGGATACATCATATTGATG
1 TCCTCATTTGGATAAATAATATTGATG
3868360 CTTTGGTTTC
Statistics
Matches: 289, Mismatches: 47, Indels: 16
0.82 0.13 0.05
Matches are distributed among these distances:
315 18 0.06
316 168 0.58
317 100 0.35
318 3 0.01
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (317 bp):
TCCTCATTTGGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTATTT
TATGTTAAATCAAAGTTCATACATTAAATAACACAAACATCGATTCCCATAACAGTCTCCATTCC
TTTCAAGATTAGGAAGCCAAAACACATTCCCTTTATTAGGGTACAAGACATTAATGCTTTGGTGT
CACAAGAAAAGCTTTTCATTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTCAAATACGACAA
ACGTGAAAACGTAAACTGATCCCCATTTTTGTCAAGATTGGGCACCAGAAACATATC
Found at i:3868380 original size:792 final size:791
Alignment explanation
Indices: 3866855--3868796 Score: 2871
Period size: 792 Copynumber: 2.5 Consensus size: 791
3866845 GATACAAGAC
* * *
3866855 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGCCACTATAACCAATTTTTCCTCTTTAGGGT
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAA-TTTTCCTCTTTAGGAT
* *
3866920 AATTGATATTAATGCTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCGGTTAAATCAA
65 AATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTGTTAAATCAA
*
3866985 AGTTCATACCTTAAATAAGAC-AAGCATTGCTTCTCATAACAGTCTCCATTCCTTTCAAGGTTGG
130 AGTTCATACCTTAAATAAGACGAA-CATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGG
3867049 GAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGC
194 GAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGC
3867114 TTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGT
259 TTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGT
*
3867179 AAACTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGAT
324 AAATTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGAT
*
3867244 ATTGACCATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTCCTTTAAATCAAAGTTCATA
389 ATTGACCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCCTTTAAATCAAAGTTCATA
* ** * *
3867309 ACTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACGGGGAAGCCAAA
454 ACTTAAATAACACAAACATCGATTCCCGTAACAGTCTCCATTCTTTTCTTGACGAGGAAGCCAAA
* **
3867374 ACACAATCACTTCCTTAGGATACAGGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTC
519 ACACAATCACTTCATTAGGATACAGGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTC
** * * * * *
3867439 CATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGAAAAAGATGAACACTCATACTGGTC
584 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGAAAAAGATGAAAACTAATACTGATC
* *
3867504 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACAGCATATTGATGC
649 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTATCATAAGGATACAGCATATTGATGC
**
3867569 CTTGGTTTTGCAAGAAAGGCTTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAAAAT
714 CTTGGTTTCACAAGAAAGGCTTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAAAAT
*
3867634 GAGACAAACATGG
779 AAGACAAACATGG
*
3867647 AATCTAGTAAAGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTATCCTCTTTAGGAT
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTT-TCCTCTTTAGGAT
* * * * *
3867712 AATTAATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTGTTTTATGTTAAATTAA
65 AATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTGTTAAATCAA
*
3867777 AGTTCATACCTTAAATAAGACGAACATTGCTTCTCATAATAGTTTCCATTCCTTTCAAGGTTGGG
130 AGTTCATACCTTAAATAAGACGAACATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGGG
* * *
3867842 ACGCCAAAACACTTTCCCTTTATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
195 AAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
*
3867907 TTTCATTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTA
260 TTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTA
*
3867972 AATTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAGCATTCTCCTCATTTGGATAAATGATA
325 AATTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATA
** * * * *
3868037 TTGATGATTTTCTTTTTCGTGGAAATCTTTTCTTTGCCTTATTTTCTTTTAAATCAAAGTTCAT-
390 TTGACCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTTCCTTTAAATCAAAGTTCATA
* **
3868101 TCATT-AATAACACAAACATCGATTCCCGTAACAGTCTCCACTT-TTTTCTTGATTAGGAAGCCA
454 AC-TTAAATAACACAAACATCGATTCCCGTAACAGTCTCCA-TTCTTTTCTTGACGAGGAAGCCA
* * * * * * * *
3868164 AAACACATTCCCTTTATTGGGATACATGACATTAATGTTTTGGTGTCACAAGAAATGTTTTTCTT
517 AAACACAATCACTTCATTAGGATACAGGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
** *
3868229 TCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGACAAACG-TGAAAACTAATACTG
582 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGA-AAAAGATGAAAACTAATACTG
** *
3868293 ATCCCCATT-TTTGTCAAGATTGGGCACCATAAACATAGTCTTATCATTTGGATACATCATATTG
646 ATCCCCATTCTTT-TCAAGATTGGGCACCATAAACATAGTCTTATCATAAGGATACAGCATATTG
* * ** * * * *
3868357 ATGCTTTGGTTTCACAAGAAAGGCTTTTTCCTCCCCAATTTTTGTATAGTCTATGTTCATGCCTA
710 ATGCCTTGGTTTCACAAGAAAGGCTTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTA
3868422 AAATAAGACAAACATGG
775 AAATAAGACAAACATGG
* * * *
3868439 ATTCTAGTAATGATCTTGTTTCATTTTGTGATTAGGCACTATAAACATATTCTT-TTCTTTAGGA
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACA-ATT-TTCCTCTTTAGGA
* * *
3868503 TAATTGATCTTAATTTTTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCT-TTAAATC
64 TAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CTGTTAAATC
*** * * *
3868567 AAAGTTCATACCTTAAATAAGACGAGA-ATCAATTATCATAATAGTCTCTATTCTTTTCAAGGTT
128 AAAGTTCATACCTTAAATAAGACGA-ACATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTT
*
3868631 GGGAAGCCAAAACACATTCCCTTCAATAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAA
192 GGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAA
* *
3868696 GCTTTTCTTTCCACCGTTTTTTGATAGAATCAAAATTTTTCTCTTAAATATTACAAATGTG-AAA
257 GCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAA
* *
3868760 CCTCAAACTT-ATCCCCATTTTTTTCAAGATTGGGCAC
321 CGT-AAA-TTGATCCCCATTCTTTTCAAGATTGGGCAC
3868797 CATAAACATA
Statistics
Matches: 1036, Mismatches: 100, Indels: 27
0.89 0.09 0.02
Matches are distributed among these distances:
791 6 0.01
792 919 0.89
793 108 0.10
794 3 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (791 bp):
AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTTCCTCTTTAGGATA
ATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTGTTAAATCAAA
GTTCATACCTTAAATAAGACGAACATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGGGA
AGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTT
TTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTAA
ATTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATAT
TGACCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCCTTTAAATCAAAGTTCATAAC
TTAAATAACACAAACATCGATTCCCGTAACAGTCTCCATTCTTTTCTTGACGAGGAAGCCAAAAC
ACAATCACTTCATTAGGATACAGGACATTAATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCA
CCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGAAAAAGATGAAAACTAATACTGATCCC
CATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTATCATAAGGATACAGCATATTGATGCCT
TGGTTTCACAAGAAAGGCTTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAAAATAA
GACAAACATGG
Found at i:3868845 original size:477 final size:475
Alignment explanation
Indices: 3868002--3871009 Score: 4012
Period size: 477 Copynumber: 6.3 Consensus size: 475
3867992 AAGATTGGGC
* * * * *
3868002 ACTAGAAAGCATTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATCTTT
1 ACTAAAAATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * * * * *
3868067 TCTTTGCCTTATTTTCTTTTAAATCAAAGTTCATTCATT-AATAACACAAACATCGATTCCCGTA
66 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCATA
* * * *
3868131 ACAGTCTCCACTT-TTTTCTTGATTAGGAAGCCAAAACACATTCCCTTTATTGGGATACATGACA
131 ATAGTCTCCA-TTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACA
* * * * ** *
3868195 TTAATGTTTTGGTGTCACAAGAAATGTTTTTCTTTCTGCCGTTTTTGATAGAATCAAAGTTTGTC
195 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTC
* *
3868260 TCTCAAATACGACAAACGTGAAAACT-AATACTGATCCCCATT-TTTGTCAAGATTGGGCACCAT
260 TCTTAAATATGACAAACGTGAAAACTCAA-ACTGATCCCCATTCTTT-TCAAGATTGGGCACCAT
* * ** *
3868323 AAACATAGTCTTATCATTTGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCC
323 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCC
* * * * * * *
3868388 TCCCCAATTTTTGTATAGTCTATGTTCATGCCTAAAATAAGACAAACATGGATTCTAGTAATGAT
388 TCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
** * *
3868453 CTTGTTTCATTTTGTGATTAGGC
453 CTTCATTCATTTTGGGATTAGGA
** * * * * ** *
3868476 ACTATAAACAT-ATTCTTTTCTTTAGGATAATTGATCTTAATTTTTTTCTTTTGCGTGGAAATCT
1 ACTA-AAA-ATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCT
* * *
3868540 TTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGAATCAATTATCA
64 TTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCA
* ** * * * *
3868605 TAATAGTCTCTATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCAATAGGGTACA-AGA
129 TAATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATA-A
*
3868669 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTTGATAGAATCAAAATTT
193 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCG-TTTTTGATAGAATCAAAGTTT
* * * * *
3868734 TTCTCTTAAATATTACAAATGTGAAACCTCAAACTTATCCCCATTTTTTTCAAGATTGGGCACCA
257 TTCTCTTAAATATGACAAACGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCACCA
*
3868799 TAAACATAGTCTTCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTC
322 TAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTC
** ** * *
3868864 CTCACCAATTTTCATAAAGTCTAAGTTTGTACCTCAAATGAGACAAACAGGGGTTCTAGTTATGA
387 CTCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGA
3868929 TCTTCATTCATTTTGGGATTAGGA
452 TCTTCATTCATTTTGGGATTAGGA
* * *
3868953 ACAAAAAATTCATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTT
1 ACTAAAAA-TCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * *
3869018 TCCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACGTTAAATAAGACAAGCAGTGC--TTCTC
65 TTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA-T-CAATTCTC
*
3869081 ATAATAGTCACCATTCTTTTCTTGATTAGGAAG--AAAACACATTCCCTTCATTAGGATACATAA
128 ATAATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAA
* *
3869144 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGTATCAAAGTTTT
193 CATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTT
** * * **
3869209 TCTCTTAAATACCACAAACATGAAAACTCATACTGATCCTTATTCTTTTCAAGATTGGGCACCAT
258 TCTCTTAAATATGACAAACGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCACCAT
* * * * **
3869274 AAACATAGTCTTCTCCTTAGGATACCTGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTGC
323 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTT-C
* * * *
3869339 C-AACCAATTTTTGTAAAGTTTAAGTTCATACCTCAAATGAGACAAATATGGGTTCTAGTAATGG
387 CTCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGA
**
3869403 TCTTCATTTTTTTTGGGATTAGGA
452 TCTTCATTCATTTTGGGATTAGGA
* * *
3869427 ACGACAAAA-CATTCTCCTCATTAGGATAAATGGTATTGATGATTTTCTTTTGCATGGGAATCTT
1 ACTA-AAAATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
** * * *
3869491 TTCTTTATCCTATTTTCCTTTAAATCAGAGTTGATACCTTAAATAACACAAGCATCAATTCTCAT
65 TTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCAT
* * *
3869556 AATAGTCACCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTGCGTTAGGATACATAACA
130 AATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACA
* * *
3869621 TTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATTGAATCAAAGTTTTTC
195 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTC
* * * *
3869686 TTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCATTCTTTTCAAGATTGGGCACCAT
260 TCTTAAATATGACAAACGTGAAAACTCAAACTGATC--CCCATTCTTTTCAAGATTGGGCACCAT
* ****
3869751 AAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGTGGGAAAGGCTTTTTCC
323 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCC
* * * * *
3869816 TCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGT
388 TCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
*
3869881 CTTCATTCATTTTGGGATTTGGA
453 CTTCATTCATTTTGGGATTAGGA
* * *
3869904 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
1 ACTAAAAATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * *
3869969 TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
66 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCATA
* * ** * * *
3870034 ACAGTCTCCATTATTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACA-AGACA
131 ATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATA-ACA
* * * *
3870098 TTGATGCTTTGGGGTCACAAGAAAACCTTTTCCTTCCACCGTTTTTGATAGAATCAAAATTTTTC
195 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTC
* * *
3870163 TCTTAAATATGACAAATGGGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATAA
260 TCTTAAATATGACAAACGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCACCATAA
* *
3870228 ACATAGTCTTCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGTAAGGCTTTTTCCTC
325 ACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTC
** *
3870293 ACCAATTTTTGTAAAGTCTAAGTTTGTACCT-AAATTGAGACAAACA-GGGTTCTAGTACTGATC
390 ACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAA-TGAGACAAACATGGGTTCTAGTAATGATC
*
3870356 TTCATTCATTTTCGGATTAGGA
454 TTCATTCATTTTGGGATTAGGA
* *
3870378 ACTACAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTT
1 ACTAAAAAT-CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTT
* * * * *
3870443 TTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCTTTACTTCTCGT
65 TTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCAT
* * * * *
3870508 AATAGTCACCATTGTTTTCCTGATTAGGAAGCCAAAACACATTCCCTGCGTTAGGATACATAACA
130 AATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACA
* * *
3870573 TTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATTGAATCAAAGTTTTTC
195 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTC
* * * *
3870638 TTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCATTCTTTTCAAGATTGGGCACCAT
260 TCTTAAATATGACAAACGTGAAAACTCAAACTGATC--CCCATTCTTTTCAAGATTGGGCACCAT
* ****
3870703 AAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGTGGGAAAGGCTTTTTCC
323 AAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCC
* * * * *
3870768 TCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGT
388 TCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
*
3870833 CTTCATTCATTTTGGGATTTGGA
453 CTTCATTCATTTTGGGATTAGGA
* * *
3870856 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
1 ACTAAAAATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* *
3870921 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
66 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCATA
3870986 ATAGTCTCCATTCTTTTCTTGATT
131 ATAGTCTCCATTCTTTTCTTGATT
3871010 GGGCACCATA
Statistics
Matches: 2213, Mismatches: 290, Indels: 59
0.86 0.11 0.02
Matches are distributed among these distances:
471 1 0.00
472 1 0.00
473 137 0.06
474 260 0.12
475 654 0.30
476 114 0.05
477 992 0.45
478 53 0.02
479 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
ACTAAAAATCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCATA
ATAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACAT
TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCT
CTTAAATATGACAAACGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAA
CATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTCA
CCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTT
CATTCATTTTGGGATTAGGA
Found at i:3869140 original size:792 final size:777
Alignment explanation
Indices: 3866855--3869176 Score: 2517
Period size: 792 Copynumber: 2.9 Consensus size: 777
3866845 GATACAAGAC
* * *
3866855 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGCCACTATAACCAATTTTTCCTCTTTAGGGT
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTTT--TCTTTAGGAT
* **
3866920 AATTGATATTAATGCTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCGGTTAAATCAA
64 AATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTTAAATCAA
* * *
3866985 AGTTCATACCTTAAATAAGACAAGCATTGCTTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGG
129 AGTTCATACCTTAAATAAGACGAGAATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGGG
3867050 AAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
194 AAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
3867115 TTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTA
259 TTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTA
*
3867180 AACTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAACATTCTCCTCATTTGGATAAATGATA
324 AACTTATCCCCATTCTTTTCAAGATTGGGCACTA-AAAACATTCTCCTCATTTGGATAAATGATA
* * *
3867245 TTGA--CCATTTTCTTTTGCATGGGAATCTTTTCTTTGCCCTATTTCCTTTAAATCAAAGTTCAT
388 TTGATGCC--TTTCTTTTACA-GGAAATCTTTTC-TT-CCCTATTTTCTTTAAATCAAAGTTCAT
* ** ***
3867308 AACTTAAATAAGACAAGGATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGACGGGGAAGCCAA
448 -ACCTAAATAAGACAAACATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTAGGAA-CCAA
* * * * * * * *
3867373 AACACAATCACTTCCTTAGGATACAGGACATTAATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT
511 AACACATTCACTTCATTAGGATACATGACATTAATG-TTTTGTTTTGCAAGGAAATCTTTCCTTT
* *
3867438 -CCATTGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATATGA-AAAAGATGAACACTCATACTG
575 GCCATT-TTTTT--TAGAATCAAAGTTTG--TCTTAAATAAGACAACAG-TG-ACACTCATACT-
* * * *
3867501 GTCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACAGCATATTGA
632 GTCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTATCATTAGGATACATCATATTGA
* * *
3867566 TGCCTTGGTTTTGCAAGAAAGGCTTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAA
697 TGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAA
*
3867631 AATGAGACAAACATGG
762 AATAAGACAAACATGG
* *
3867647 AATCTAGTAAAGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTATCCTCTTTAGGAT
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTT-T-TTCTTTAGGAT
* * * *
3867712 AATTAATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCGTGTTTT-ATGTTAAATTA
64 AATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCAT-TTAAATCA
*
3867776 AAGTTCATACCTTAAATAAGACGA-ACATTGCTTCTCATAATAGTTTCCATTCCTTTCAAGGTTG
128 AAGTTCATACCTTAAATAAGACGAGA-ATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTG
* * *
3867840 GGACGCCAAAACACTTTCCCTTTATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAG
192 GGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAG
*
3867905 CTTTTCATTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACG
257 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACG
*
3867970 TAAA-TTGATCCCCATTCTTTTCAAGATTGGGCACTAGAAAGCATTCTCCTCATTTGGATAAATG
322 TAAACTT-ATCCCCATTCTTTTCAAGATTGGGCACTA-AAAACATTCTCCTCATTTGGATAAATG
** * * *
3868034 ATATTGATGATTTTCTTTTTCGTGGAAATCTTTTCTTTGCCTTATTTTCTTTTAAATCAAAGTTC
385 ATATTGATGCCTTTCTTTTAC-AGGAAATCTTTTC-TT-CCCTATTTTC-TTTAAATCAAAGTTC
* * * * *
3868099 ATTCATTAATAACACAAACATCGATTCCCGTAACAGTCTCCACTT-TTTTCTTGATTAGGAAGCC
446 ATACCTAAATAAGACAAACATCGATTCTCGTAACAGTCTCCA-TTCTTTTCTTGATTAGGAA-CC
* * * * * * *
3868163 AAAACACATTCCCTTTATTGGGATACATGACATTAATGTTTTGGTGT-CACAAGAAATGTTTTTC
509 AAAACACATTCACTTCATTAGGATACATGACATTAATGTTTTGTTTTGCA-AGGAAA--TCTTTC
* * ** * * *
3868227 TTTCTGCCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATACGACAA-ACGTGAAAACTAATAC
571 CTT-TGCCATTTTTTTTAGAATCAAAGTTTGTCT-T-AAATAAGACAACA-GTG-ACACTCATAC
*
3868291 TGATCCCCATT-TTTGTCAAGATTGGGCACCATAAACATAGTCTTATCATTTGGATACATCATAT
631 TG-TCCCCATTCTTT-TCAAGATTGGGCACCATAAACATAGTCTTATCATTAGGATACATCATAT
* ** * * * *
3868355 TGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCTCCCCAATTTTTGTATAGTCTATGTTCATGCC
694 TGATGCTTTGGTTTCGCAAGAAAGGCTTTTTCCTAACCAATTTTTGAAAAGCCTATATTCATGCC
3868420 TAAAATAAGACAAACATGG
759 TAAAATAAGACAAACATGG
* * *
3868439 ATTCTAGTAATGATCTTGTTTCATTTTGTGATTAGGCACTATAAACATATTCTTTTCTTTAGGAT
1 AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACA-ATT-TTTTCTTTAGGAT
* * * *
3868504 AATTGATCTTAATTTTTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAA
64 AATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTTAAATCAA
*** * * *
3868569 AGTTCATACCTTAAATAAGACGAGAATCAATTATCATAATAGTCTCTATTCTTTTCAAGGTTGGG
129 AGTTCATACCTTAAATAAGACGAGAATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGGG
*
3868634 AAGCCAAAACACATTCCCTTCAATAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
194 AAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCT
* * *
3868699 TTTCTTTCCACCGTTTTTTGATAGAATCAAAATTTTTCTCTTAAATATTACAAATGTG-AAACCT
259 TTTCTTTCCACCG-TTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGT
* * * * * ** ** *
3868763 CAAACTTATCCCCATTTTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATTCATC
323 -AAACTTATCCCCATTCTTTTCAAGATTGGGCACTAAAAACAT--TCTCCTCATTTGGATAAATG
** * * * * * * * *
3868828 ATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTCACCAATTTTC-ATAAAGTCTAAGTTT
385 ATATTGATGCCTTTCTTTTACAGGAAA-TC-TTTTCTTC-CCTATTTTCTTTAAA-TCAAAGTTC
* * ** * * * * * **
3868892 GTACCTCAAATGAGACAAACAGGGGTTCTAGTTA-TGATCTTCATTCATTTT-GGGATTAGGAA-
446 ATACCT-AAATAAGACAAACATCGATTCTCGTAACAG-TCTCCATTC-TTTTCTTGATTAGGAAC
* * * * * * * *
3868954 CAAAAAATTCATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTT
508 CAAAACA--CATTCACTTCATTAGGATACATGACATTAATG-TTTTGTTTTGCAAGGAAATCTTT
** *
3869019 CCTTTGCCATATTTTCCTTTA-AATCAAAGTTCATACGTTAAATAAGACAAGCAGTG-CTTCTCA
570 CCTTTGCCAT-TTTT--TTTAGAATCAAAGTTTGT-C-TTAAATAAGACAA-CAGTGAC-ACTCA
* * ** * ** * * * *
3869082 TAATAGTCACCATTCTTTTCTTGATTAGG-AAGA-AAACACATTCCCT-TCATTAGGATACATAA
628 TACT-GTCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGT-CTTATCATTAGGATACATCA
* * *
3869144 CATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
691 TATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
3869177 CTTTCCACCG
Statistics
Matches: 1290, Mismatches: 187, Indels: 106
0.81 0.12 0.07
Matches are distributed among these distances:
790 5 0.00
791 15 0.01
792 950 0.74
793 139 0.11
794 144 0.11
795 33 0.03
796 4 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (777 bp):
AATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTTTTCTTTAGGATAA
TTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCATTTAAATCAAAG
TTCATACCTTAAATAAGACGAGAATTGCTTCTCATAATAGTCTCCATTCCTTTCAAGGTTGGGAA
GCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTT
TCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGTAAA
CTTATCCCCATTCTTTTCAAGATTGGGCACTAAAAACATTCTCCTCATTTGGATAAATGATATTG
ATGCCTTTCTTTTACAGGAAATCTTTTCTTCCCTATTTTCTTTAAATCAAAGTTCATACCTAAAT
AAGACAAACATCGATTCTCGTAACAGTCTCCATTCTTTTCTTGATTAGGAACCAAAACACATTCA
CTTCATTAGGATACATGACATTAATGTTTTGTTTTGCAAGGAAATCTTTCCTTTGCCATTTTTTT
TAGAATCAAAGTTTGTCTTAAATAAGACAACAGTGACACTCATACTGTCCCCATTCTTTTCAAGA
TTGGGCACCATAAACATAGTCTTATCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAA
AGGCTTTTTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAAAATAAGACAAACATGG
Found at i:3871056 original size:952 final size:949
Alignment explanation
Indices: 3868002--3871009 Score: 4341
Period size: 952 Copynumber: 3.2 Consensus size: 949
3867992 AAGATTGGGC
* * * * * * *
3868002 ACTAGAAAGCATTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATCTTT
1 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
* * * * * *
3868067 TCTTTGCCTTATTTTCTTTTAAATCAAAGTTCATTCATT-AATAAC-ACAAACATCGATTCCCGT
66 TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAAT-ACGACAAGCATCGATTCTCAT
* *
3868130 AACAGTCTCCACTT-TTTTCTTGATTAGGAAGCCAAAACACATTCCCTTTATTGGGATACATGAC
130 AACAGTCTCCA-TTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGAC
* * * * ** *
3868194 ATTAATGTTTTGGTGTCACAAGAAATGTTTTTCTTTCTGCCGTTTTTGATAGAATCAAAGTTTGT
194 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTT
* *
3868259 CTCTCAAATACGACAAACGTGAAAACT-AATACTGATCCCCATT-TTTGTCAAGATTGGGCACCA
259 CTCTTAAATACGACAAACGTGAAAACTCAA-ACTGATCCCTATTCTTT-TCAAGATTGGGCACCA
* * *
3868322 TAAACATAGTCTTATCATTTGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTC
322 TAAACATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTC
* * * * * *
3868387 CTCCCCAATTTTTGTATAGTCTATGTTCATGCCTAAAATAAGACAAACATGGATTCTAGTAATGA
387 CTCACCAATTTTTGTAAAGTCTAAGTTCATACCT-AAATGAGACAAACATGGGTTCTAGTAATGA
** * * * ** * * * *
3868452 TCTTGTTTCATTTTGTGATTAGGCACTATAAACATATTCTTTTCTTTAGGATAATTGATCTTAAT
451 TCTTCATTCATTTTG-GATTAGGAACTACAAA-ACATTCTCCTCATTAGGATAAATGATATTGAT
** * *
3868517 TTTTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTA
514 GATTTTCTTTTGCATGGGAATCTTTTCTTTG-CCTATTTTCCTTTAAATCAAAGTTCATACCTTA
* * * * * * * *
3868582 AATAAGACGAGAATCAATTATCATAATAGTCTCTATTCTTTTCAAGGTTGGGAAGCCAAAACACA
578 AATAAGACAAGCATCAATTCTCATAATAGTCACCATTCTTTTCATGATTAGGAAGCCAAAACACA
* ** * * *
3868647 TTCCCTTCAATAGGGTACA-AGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACC
643 TTCCCTGCGTTAGGATACATA-ACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * * *
3868711 GTTTTTTGATAGAATCAAAATTTTTCTCTTAAATATTACAAATGTGAAACCTCAAACTTATC--C
707 G-TTTTTGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTC
* * *
3868774 CCATTTTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATTCATCATATTGATGCC
771 CCATTCTTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCC
**** * ** * * ** *
3868839 TTGGTTTCACAAGAAAGGCTTTTTCCTCACCAATTTTCATAAAGTCTAAGTTTGTACCTCAAATG
836 TTGGTTTCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATG
* * * *
3868904 AGACAAACAGGGGTTCTAGTTATGATCTTCATTCATTTTGGGATTAGGA
901 AGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
* * * * **
3868953 ACAAAAAATTCATTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTT
1 ACTACAAA-TCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTT
* * * * *
3869018 TCCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACGTTAAATAAGACAAGCAGT-GCTTCTCA
65 TTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCA-TCGATTCTCA
* * *
3869082 TAATAGTCACCATTCTTTTCTTGATTAGGAAG--AAAACACATTCCCTTCATTAGGATACATAAC
129 TAACAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGAC
* *
3869145 ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGTATCAAAGTTTTT
194 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTT
* * * *
3869210 CTCTTAAATACCACAAACATGAAAACTCATACTGATCCTTATTCTTTTCAAGATTGGGCACCATA
259 CTCTTAAATACGACAAACGTGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATA
* * **
3869275 AACATAGTCTTCTCCTTAGGATACCTGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTGCC
324 AACATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTT-CC
* * * *
3869340 -AACCAATTTTTGTAAAGTTTAAGTTCATACCTCAAATGAGACAAATATGGGTTCTAGTAATGGT
388 TCACCAATTTTTGTAAAGTCTAAGTTCATACCT-AAATGAGACAAACATGGGTTCTAGTAATGAT
** * *
3869404 CTTCATTTTTTTTGGGATTAGGAACGACAAAACATTCTCCTCATTAGGATAAATGGTATTGATGA
452 CTTCATTCATTTT-GGATTAGGAACTACAAAACATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
3869469 TTTTCTTTTGCATGGGAATCTTTTCTTTATCCTATTTTCCTTTAAATCAGAGTTGATACCTTAAA
516 TTTTCTTTTGCATGGGAATCTTTTCTTT-GCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAA
* *
3869534 TAACACAAGCATCAATTCTCATAATAGTCACCATTCTTTTCTTGATTAGGAAGCCAAAACACATT
580 TAAGACAAGCATCAATTCTCATAATAGTCACCATTCTTTTCATGATTAGGAAGCCAAAACACATT
3869599 CCCTGCGTTAGGATACATAACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
645 CCCTGCGTTAGGATACATAACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTT
3869664 TTTGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCAT
710 TTTGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCAT
3869729 TCTTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGG
775 TCTTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGG
3869794 TTTCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGAC
840 TTTCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGAC
3869859 AAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
905 AAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
3869904 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
1 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
3869969 TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
66 TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
* ** * * * *
3870034 ACAGTCTCCATTATTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACAT
131 ACAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACAT
* * * *
3870099 TGATGCTTTGGGGTCACAAGAAAACCTTTTCCTTCCACCGTTTTTGATAGAATCAAAATTTTTCT
196 TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCT
* * *
3870164 CTTAAATATGACAAATGGGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAA
261 CTTAAATACGACAAACGTGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAA
* * * *
3870229 CATAGTCTTCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGTAAGGCTTTTTCCTCA
326 CATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCTCA
** *
3870294 CCAATTTTTGTAAAGTCTAAGTTTGTACCTAAATTGAGACAAACA-GGGTTCTAGTACTGATCTT
391 CCAATTTTTGTAAAGTCTAAGTTCATACCTAAA-TGAGACAAACATGGGTTCTAGTAATGATCTT
*
3870358 CATTCATTTTCGGATTAGGAACTACAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATT
455 CATTCATTTT-GGATTAGGAACTACAAA-ACATTCTCCTCATTAGGATAAATGATATTGATGATT
3870423 TTCTTTTGCATGGGAATCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACCTTAAATA
518 TTCTTTTGCATGGGAATCTTTTCTTTGCC-TATTTTCCTTTAAATCAAAGTTCATACCTTAAATA
* * * * * *
3870488 AGACAAGCTTTACTTCTCGTAATAGTCACCATTGTTTTCCTGATTAGGAAGCCAAAACACATTCC
582 AGACAAGCATCAATTCTCATAATAGTCACCATTCTTTTCATGATTAGGAAGCCAAAACACATTCC
3870553 CTGCGTTAGGATACATAACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
647 CTGCGTTAGGATACATAACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
3870618 TGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCATTC
712 TGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCATTC
3870683 TTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTT
777 TTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTT
3870748 TCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGACAA
842 TCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGACAA
3870813 ACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
907 ACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
3870856 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
1 ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
*
3870921 TCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
66 TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
*
3870986 ATAGTCTCCATTCTTTTCTTGATT
131 ACAGTCTCCATTCTTTTCTTGATT
3871010 GGGCACCATA
Statistics
Matches: 1845, Mismatches: 192, Indels: 39
0.89 0.09 0.02
Matches are distributed among these distances:
949 53 0.03
950 327 0.18
951 489 0.27
952 934 0.51
953 41 0.02
954 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (949 bp):
ACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTT
TCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATA
ACAGTCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACAT
TGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCT
CTTAAATACGACAAACGTGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAA
CATAGTCTTCTCCTTAGGATACATCATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTCCTCA
CCAATTTTTGTAAAGTCTAAGTTCATACCTAAATGAGACAAACATGGGTTCTAGTAATGATCTTC
ATTCATTTTGGATTAGGAACTACAAAACATTCTCCTCATTAGGATAAATGATATTGATGATTTTC
TTTTGCATGGGAATCTTTTCTTTGCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGAC
AAGCATCAATTCTCATAATAGTCACCATTCTTTTCATGATTAGGAAGCCAAAACACATTCCCTGC
GTTAGGATACATAACATTGATCCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
TGAATCAAAGTTTTTCTTTTAAATATGAAAAACGTGAAAACTCATACTTATCGTCCCATTCTTTT
CAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGT
GGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAAATGAGACAAACAT
GGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGA
Found at i:3871250 original size:316 final size:315
Alignment explanation
Indices: 3870674--3871328 Score: 1184
Period size: 316 Copynumber: 2.1 Consensus size: 315
3870664 CATACTTATC
**
3870674 GTCCCATTCTTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGAT
1 GTCCCATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGAT
* *
3870739 GCCTTGGTTTCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAA
66 GCCTTGGTTTCGCGGGAAAGACTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAA
3870804 ATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGAACTACAAATCATT
131 ATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGAACTACAAATCATT
3870869 CTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
196 CTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* *
3870934 TTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCATAATA
261 TTCCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCATAATA
3870989 GTCTCCATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGA
1 GTC-CCATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGA
* *
3871054 TGCCTTGGTTTCGCGGGAACGACTTTTTCCTCCCCAATTTTTGTAAAATCTAAGTTCATGCCTCA
65 TGCCTTGGTTTCGCGGGAAAGACTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCA
*
3871119 AATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGTTTTGGAACTACAAATCAT
130 AATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGAACTACAAATCAT
*
3871184 TCTCCTCATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
195 TCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
*
3871249 TTTCCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCGTAATA
260 TTTCCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCATAATA
*
3871305 GTCCACATTTTTTTCTTGATTGGG
1 GTCC-CATTCTTTTCTTGATTGGG
3871329 AAGCCAAAAC
Statistics
Matches: 326, Mismatches: 12, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
315 4 0.01
316 322 0.99
ACGTcount: A:0.27, C:0.20, G:0.15, T:0.38
Consensus pattern (315 bp):
GTCCCATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGAT
GCCTTGGTTTCGCGGGAAAGACTTTTTCCTCCCCAATTTTTGTAAAATCTAACTTCATGCCTCAA
ATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGATTTGGAACTACAAATCATT
CTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
TTCCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCATAATA
Found at i:3871256 original size:793 final size:791
Alignment explanation
Indices: 3870202--3871725 Score: 2175
Period size: 793 Copynumber: 1.9 Consensus size: 791
3870192 ACTGATCCCT
*
3870202 ATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATTCATCATATTGATGCCTT
1 ATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTT
* * * **
3870267 GGTTTCACAAGTAAGGCTTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTTGTACCTAAATTGAG
66 GGTTTCACAAGGAAGACTTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATACCTAAATTGAG
*
3870332 ACAAACAGGGTTCTAGTACTGATCTTCATTCATTTTCGGATTAGGAACTACAAATGCATTCTCCT
131 ACAAACAGGGTTCTAGTAATGATCTTCATTCATTTTCGGATTAGGAACTACAAATGCATTCTCCT
* **
3870397 CATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCATATTTTCCT
196 CATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCATATTTTCCT
* * **
3870462 TTAAATCAAAGTTCATACCTTAAATAAGACAAGC-TTTACTTCTCGTAATAGT-CACCATTGTTT
261 TTAAATCAAAGTTAATACCTAAAATAAGACAAGCATCGA-TTCTCGTAATAGTCCA-CATTGTTT
* * * *
3870525 TCCTGATTAGGAAGCCAAAACACATTCCCTGCGTTAGGATACATA-ACATTGATCCTTTGGTGTC
324 TCCTGATTAGGAAGCCAAAACACATTCCCTGCCTTAAGATACA-AGACATTAAGCCTTTGGTGTC
* * *
3870589 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATTGAATCAAAGTTTTTCTTTTAAATATGAAAAA
388 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTGTCTATTAAATATGAAAAA
* * * *
3870654 CGTGAAAACTCATACTTATCGTCCCATTCTTTTCAAGATTGGGCACCATAAACGTAGTCTTCTCC
452 CATGAAAACTCATACTGATC-T-CCATTCTTTTCAAGATTGGGCACCATAAACCTAGCCTTCTCC
* **** * * **
3870719 TAAGGATACATCATATTGATGCCTTGGTTTCGTGGGAAAGGCTTTTTCCTCCCCAATTTTTGTAA
515 TAAGGATACATCATATTGATACCTTGGTTTCACAAGAAAGGCATTTTCCTCACCAATTTTCATAA
* * *
3870784 AATCTAACTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGG
580 AATCTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGGG
* * * * *
3870849 ATTTGGAACTACAAA-TCATTCTCCTCA-TTAGGATAAACGATATTGATGATTTTCTTTTGCATG
645 ATTCGGAACTACAAACACAATCT-CTCATTTAGGATAAACGATAATGATGATTTTCTTTTAC-TG
*
3870912 A-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATC
708 AGAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATC
3870976 GATTCTCATAATAGTCTCC
773 GATTCTCATAATAGTCTCC
** *
3870995 ATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACATCATATTGATGCCTT
1 ATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTT
* * * *
3871060 GGTTTCGC-GGGAACGACTTTTTCCTCCCCAATTTTTGTAAAATCTAAGTTCATGCCTCAAA-TG
66 GGTTTCACAAGGAA-GACTTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATACCT-AAATTG
* * * *
3871123 AGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGTTTTGGAACTACAAAT-CATTCT
129 AGACAAACA-GGGTTCTAGTAATGATCTTCATTCATTTTCGGATTAGGAACTACAAATGCATTCT
*
3871187 CCTCATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTT
193 CCTCATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCATATTTT
* *
3871252 CCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCGTAATAGTCCACATTTTT
258 CCTTTAAATCAAAGTTAATACCTAAAATAAGACAAGCATCGATTCTCGTAATAGTCCACATTGTT
* * * *
3871317 TTCTTGATTGGGAAGCCAAAACACATTCCCTTCCTTAAGATACAAGACATTAAGGCTTTGGTGTC
323 TTCCTGATTAGGAAGCCAAAACACATTCCCTGCCTTAAGATACAAGACATTAAGCCTTTGGTGTC
* *
3871382 GCAAGAAAATCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTGTCTATTAAATATGAAAAAC
388 GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTGTCTATTAAATATGAAAAAC
* * *
3871447 ATGAACACTCATACTGATCTCCATTTTTTTCAAGATTGGGCACCATAAGCCTAGCCTTCTCCTAA
453 ATGAAAACTCATACTGATCTCCATTCTTTTCAAGATTGGGCACCATAAACCTAGCCTTCTCCTAA
* * *
3871512 TGATATATCATATTGATACCTTGGTTTCACAAGAAAGGCATTTTCCTCACCAATTTTCATAAAGT
518 GGATACATCATATTGATACCTTGGTTTCACAAGAAAGGCATTTTCCTCACCAATTTTCATAAAAT
** * *
3871577 CTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCTTTCATTTTGTGATT
583 CTAACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGGGATT
* * * * *
3871642 CGGCACTATAAACACAATCTCTTATTTAGGATAAATGATAATGATGATTTTCTTTTACTTAGAAA
648 CGGAACTACAAACACAATCTCTCATTTAGGATAAACGATAATGATGATTTTCTTTTACTGAGAAA
*
3871707 TCTTTTCTTTACCGTATTT
713 TCTTTTCTTTACCCTATTT
3871726 AGGATAAATG
Statistics
Matches: 643, Mismatches: 79, Indels: 20
0.87 0.11 0.03
Matches are distributed among these distances:
790 166 0.26
791 56 0.09
792 40 0.06
793 331 0.51
794 50 0.08
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.37
Consensus pattern (791 bp):
ATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTT
GGTTTCACAAGGAAGACTTTTTCCTCACCAATTTTTGTAAAATCTAAGTTCATACCTAAATTGAG
ACAAACAGGGTTCTAGTAATGATCTTCATTCATTTTCGGATTAGGAACTACAAATGCATTCTCCT
CATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCATATTTTCCT
TTAAATCAAAGTTAATACCTAAAATAAGACAAGCATCGATTCTCGTAATAGTCCACATTGTTTTC
CTGATTAGGAAGCCAAAACACATTCCCTGCCTTAAGATACAAGACATTAAGCCTTTGGTGTCGCA
AGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTGTCTATTAAATATGAAAAACATG
AAAACTCATACTGATCTCCATTCTTTTCAAGATTGGGCACCATAAACCTAGCCTTCTCCTAAGGA
TACATCATATTGATACCTTGGTTTCACAAGAAAGGCATTTTCCTCACCAATTTTCATAAAATCTA
ACTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGGGATTCGG
AACTACAAACACAATCTCTCATTTAGGATAAACGATAATGATGATTTTCTTTTACTGAGAAATCT
TTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATACGACAAGCATCGATTCTCA
TAATAGTCTCC
Found at i:3871267 original size:158 final size:158
Alignment explanation
Indices: 3870783--3871267 Score: 511
Period size: 158 Copynumber: 3.1 Consensus size: 158
3870773 AATTTTTGTA
* *
3870783 AAATCTAACTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGG
1 AAATCAAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGG
3870848 GATTTGGAACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGA
66 GATTTGGAACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGA
3870913 AAATCTTTTCTTTGCCCTATTTTCCTTT
131 AAATCTTTTCTTTGCCCTATTTTCCTTT
* * * * * * *
3870941 AAATCAAAGTTCATACCTTAAAT-ACGACAAGCATCGATTCTCA-TAATAGTCTCCATTC-TTTT
1 AAATCAAAGTTCATGCCTCAAATGA-GACAAACATGGGTTCT-AGTAATGGTCTTCATTCATTTT
** * * * * * * * * * ** ** *
3871003 CTTGATTGGGCACCATAAA-CGTAGTCTTCTCCTAAGGATACATC-ATATTGATGCCTTGGTTTC
64 -GGGATTTGGAACTACAAATC--ATTCTCCTCATTAGGATA-AACGATATTGATGATTTTCTTTT
** * * * * *
3871066 GCGGGAACGA-CTTTT-TCCTCCCCAATTTT--TGTA
125 GCATGAA-AATCTTTTCT-TTGCCCTATTTTCCT-TT
*
3871099 AAATCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGG
1 AAATCAAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGG
* *
3871164 GTTTTGGAACTACAAATCATTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGA
66 GATTTGGAACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGA
3871229 AAATCTTTTCTTTGCCCTATTTTCCTTT
131 AAATCTTTTCTTTGCCCTATTTTCCTTT
3871257 AAATCAAAGTT
1 AAATCAAAGTT
3871268 AATACCTAAA
Statistics
Matches: 243, Mismatches: 66, Indels: 36
0.70 0.19 0.10
Matches are distributed among these distances:
156 2 0.01
157 55 0.23
158 128 0.53
159 55 0.23
160 3 0.01
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.38
Consensus pattern (158 bp):
AAATCAAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGG
GATTTGGAACTACAAATCATTCTCCTCATTAGGATAAACGATATTGATGATTTTCTTTTGCATGA
AAATCTTTTCTTTGCCCTATTTTCCTTT
Found at i:3872505 original size:477 final size:471
Alignment explanation
Indices: 3870993--3872905 Score: 1686
Period size: 477 Copynumber: 4.0 Consensus size: 471
3870983 ATAATAGTCT
** ** *
3870993 CCATTCTTTTCTTGATTGGGCACCATAAACGTAGTCTTCTCCTAAGGATACA-TCATATTGATGC
1 CCATTCTTTTCAAGATTGGGCACCATAAACACAGTCCTCTCCTAAGGATACACT-ATATTGATGC
** * * * * *
3871057 CTTGGTTTCGCGGGAACGACTTTTTCCTCC--CCAATTTTTGTAAAA-TCTA-AGTTCATGCCTC
65 CTTGGTTTCGCAAGAAAGGC-ATTT-CTCCAACCAATTTTTG-AAAAGCCTAGA-TTCATGCCTA
** * * * * ** * * *
3871118 AAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCATTTTGGGTTTTGGAACTACAAATC-
126 AAATGAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGACTAGGCACTATAAA-CA
* * * ** * *
3871182 A-TTCTCCTCATTAGGATAAAGGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
190 ATTTCTCCTCTTTAGGATAAATGATATTAACCATTTTCTTTTGCATGGAAATCTTTTTTTTGCCC
* * * * * * * *
3871246 TATTTTCCTTTAAATCAAAGTTAATACCTAAAATACGACAAGCATCGATTCTCGTAATAGTC-CA
255 TATTTTCCGTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCTCATAACAGTCTC-
* ** * * * *
3871310 CATTTTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCCTTAAGATACAAGACATTAAGGCTT
319 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGAC-TTGATGCTT
* * * * *
3871375 TGGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTGTCTATTAAATAT
383 TGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTGTCTCTTAAATAC
* * * *
3871440 GAAAAACATGAACACTCATACTGATCT
448 GAAAAA-GTGAAAACT-A-ATTGATCC
* * * *
3871467 CCATTTTTTTCAAGATTGGGCACCATAAGC-CTAG-CCTTCTCCTAATGATATA-TCATATTGAT
1 CCATTCTTTTCAAGATTGGGCACCATAAACAC-AGTCC-TCTCCTAAGGATACACT-ATATTGAT
* * * * *
3871529 ACCTTGGTTTCACAAGAAAGGCATTT-TCCTCACCAA-TTTTCATAAAGTCTATG-TTCATGCCT
63 GCCTTGGTTTCGCAAGAAAGGCATTTCTCC-AACCAATTTTTGA-AAAGCCTA-GATTCATGCCT
* * * ** * * *
3871591 CAAATGAGACAAACATGGATTCTAGTAACGATCTTCTTTCATTTTGTGATTCGGCACTATAAACA
125 AAAATGAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGACTAGGCACTATAAACA
* * * * * ** * * * * *
3871656 CA-ATCTCTTATTTAGGATAAATGATAATGATGATTTTCTTTTACTTAGAAATCTTTTCTTTACC
190 -ATTTCTCCTCTTTAGGATAAATGATATTAACCATTTTCTTTTGCATGGAAATCTTTTTTTTGCC
* * * * ** * *
3871720 GTA-TTT-AG---GAT-AAA--TGATAA--TAAGATAAG-C---TTTCAATTCTCTTAACAGTCT
254 CTATTTTCCGTTAAATCAAAGTTCATAACTTAA-ATAAGACAAACATCGATTCTCATAACAGTCT
* *
3871771 CCATTCTTTTCAAGATTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
318 CCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGAC-TTGATGCT
* * * * * *
3871836 TTTGTGTCGTAAGGAAAGCTTTT-TTTCCCCCATTTTTGATAGAATCAAAGTTTGCCTTTTAAAT
382 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG-TTGTCTCTTAAAT
*
3871900 AC-AACAAACGTGAATACTTATATTGATCC
446 ACGAA-AAA-GTGAAAAC-TA-ATTGATCC
* * * * *
3871929 CCATTCTTTTCAAGATTGGGCACCATAAGCACAGTCCTCTCTTTAGGTTACACTATATTGATGCT
1 CCATTCTTTTCAAGATTGGGCACCATAAACACAGTCCTCTCCTAAGGATACACTATATTGATGCC
* * * * ** * **
3871994 TTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTTTAGGTTTGTGCCTCAAAA-
66 TTGGTTTCGCAAGAAAGGCATTTCTCCAACCAATTTTTGAAAAGCCTAGATTCATGCCT-AAAAT
* * * * * *
3872058 GAGACAAACATGGATTCTAGTGATGATCTT-TTTCCATTTTGTGGCTATGCACTATAAACACA-T
130 GAGACAAACATGGAATCTAGTAATGATCTTGATT-CAATTTGTGACTAGGCACTATAAACA-ATT
* * *
3872121 TCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGGAATCTTTTTTTTTGCCCTA
193 TCTCCTCTTTAGGATAAATGATATTAACCATTTTCTTTTGCATGGAAATC-TTTTTTTTGCCCTA
* **
3872186 TTTTCCTTTAAATCAAAGTTCATAACTTAAATAAGACAAGGATCGATTCTCGA-AACAGTCTCCA
257 TTTTCCGTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCTC-ATAACAGTCTCCA
* ** ** * * *
3872250 ATCTTTTCTTGACGGGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACTTCAATGCTTTG
321 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACTT-GATGCTTTG
* * **
3872315 GTGTTGGAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTCTGTCTCTTAAATACG
385 GTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT-TGTCTCTTAAATACG
* *
3872380 AAAAAGATGAACACTCATGCTGATCC
449 AAAAAG-TGAAAACTAAT--TGATCC
* * *
3872406 CCATTCTTTTTAAGATTGGGCACCATAAACATAGTCTTCTCCTAAGGATACAAC-ATATTGATGC
1 CCATTCTTTTCAAGATTGGGCACCATAAACACAGTCCTCTCCTAAGGATAC-ACTATATTGATGC
* *
3872470 CTTGGTTTTGCAAGAAAGGC-TTTCTCCTAACCAATTTTTGAAAAGCCTATATTCATGCCTAAAA
65 CTTGGTTTCGCAAGAAAGGCATTTCTCC-AACCAATTTTTGAAAAGCCTAGATTCATGCCTAAAA
*
3872534 TGAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTT
129 TGAGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGACTAGGCACTATAAACAATTT
* *** *
3872599 CTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTGTT
194 CTCCTCTTTAGGATAAATGATATTAACCATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTATT
* * *
3872664 TTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAACATTGCTTCTCATAACAGTCTCCATTC
259 TTCCGTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTC
* * ** * * *
3872729 CTTTCAAGGTTGGGACCCCAAAAACACTTTCCCTTTATTAGGGTACAAGACCTTGATGCTTTGGT
324 TTTTCAAGATTGGGAAGCC-AAAACACATTCCCTTCATTAGGATACAAGA-CTTGATGCTTTGGT
* * * *
3872794 GTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATATGAC
387 GTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC-AAAGTTGTCTCTTAAATACGA-
*
3872859 AAATGTGAAAACGTAAATTGATCC
450 AAAAGTGAAAAC-T-AATTGATCC
3872883 CCATTCTTTTCAAGATTGGGCAC
1 CCATTCTTTTCAAGATTGGGCAC
3872906 TAGAAAGCAT
Statistics
Matches: 1175, Mismatches: 205, Indels: 115
0.79 0.14 0.08
Matches are distributed among these distances:
461 30 0.03
462 302 0.26
463 27 0.02
464 3 0.00
465 3 0.00
466 4 0.00
467 4 0.00
468 2 0.00
469 6 0.01
470 2 0.00
471 8 0.01
472 6 0.01
473 16 0.01
474 141 0.12
475 59 0.05
476 183 0.16
477 359 0.31
478 18 0.02
479 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (471 bp):
CCATTCTTTTCAAGATTGGGCACCATAAACACAGTCCTCTCCTAAGGATACACTATATTGATGCC
TTGGTTTCGCAAGAAAGGCATTTCTCCAACCAATTTTTGAAAAGCCTAGATTCATGCCTAAAATG
AGACAAACATGGAATCTAGTAATGATCTTGATTCAATTTGTGACTAGGCACTATAAACAATTTCT
CCTCTTTAGGATAAATGATATTAACCATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTATTTT
CCGTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTT
TTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACTTGATGCTTTGGTGTCG
TAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTGTCTCTTAAATACGAAAAAGT
GAAAACTAATTGATCC
Found at i:3873172 original size:316 final size:317
Alignment explanation
Indices: 3872597--3873261 Score: 802
Period size: 316 Copynumber: 2.1 Consensus size: 317
3872587 TATAAACAAT
* * * *
3872597 TTCTCCTC-TTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTTTTTGCCCT
1 TTCTCCTCATTT-GGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* * * * *
3872661 GTTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAACATTGCTTCTCATAACAGTCTCCA
65 ATTTTCCGTTAAATCAAAGTTCATACATTAAATAAGACAAACATCGATTCCCATAACAGTCTCCA
* * * * * * *
3872726 TTCCTTTCAAGGTTGGGACCCCAAAAACACTTTCCCTTTATTAGGGTACAAGACCTTGATGCTTT
130 CTCCTTTCAAGATTGGGAACCCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTT
* * *
3872791 GGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTTTCTCTTAAATAT
195 GGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAAATTTTCTCTCAAATAT
* * *
3872856 GACAAATGTGAAAACGTAA-ATTGATCCCCATTCTTT-TCAAGATTGGGCACTAGAAAGCA
260 GACAAACGTGAAAAC-TAATACTGATCCCCATT-TTTGTCAAGATTGGGCACCAGAAA-CA
* * *
3872915 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATCTTTTCTTTGCCTTA
1 TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
* * *
3872980 TTTTCCTTTAAATCAAAGTTCATTCATT-AATAAGACAAACATCGATTCCCGTAACAGTCTCCAC
66 TTTTCCGTTAAATCAAAGTTCATACATTAAATAAGACAAACATCGATTCCCATAACAGTCTCCAC
* ** * * * *
3873044 TCTTTTCTTGATTGGGAAGCC-AAAACACATTCCCTTTATTAGGATACATGGCATTAATGTTTTG
131 TCCTTTCAAGATTGGGAACCCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTTG
** * ** *
3873108 GTGTGGCAAGAAATGCTTTTCTTTCTGCCATTTTTGATAGAATC-AAAGTTTATCTCTCAAATAT
196 GTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAAATTT-TCTCTCAAATAT
* *
3873172 GACAAACGTGAAAACTAATACTGATCCCTATTTTTGTCAAGATTGGGCACCATAAACA
260 GACAAACGTGAAAACTAATACTGATCCCCATTTTTGTCAAGATTGGGCACCAGAAACA
** * *
3873230 TAGTCTTGTCATTTGGATACATCATATTGATG
1 T--TCTCCTCATTTGGATAAATGATATTGATG
3873262 CCTTGGTTTC
Statistics
Matches: 294, Mismatches: 47, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
315 15 0.05
316 127 0.43
317 71 0.24
318 78 0.27
319 3 0.01
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (317 bp):
TTCTCCTCATTTGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
TTTTCCGTTAAATCAAAGTTCATACATTAAATAAGACAAACATCGATTCCCATAACAGTCTCCAC
TCCTTTCAAGATTGGGAACCCAAAAACACATTCCCTTTATTAGGATACAAGACATTAATGCTTTG
GTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAAATTTTCTCTCAAATATG
ACAAACGTGAAAACTAATACTGATCCCCATTTTTGTCAAGATTGGGCACCAGAAACA
Found at i:3873339 original size:793 final size:796
Alignment explanation
Indices: 3872118--3873699 Score: 2243
Period size: 793 Copynumber: 2.0 Consensus size: 796
3872108 ACTATAAACA
* *
3872118 CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGGAATCTTTTTTTTTGCC
1 CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGAAATCTTTTTCTTTGCC
** *
3872183 CTATTTTCCTTTAAATCAAAGTTCATAACTTAAATAAGACAAGGATCGATTCTCGAAACAGTCTC
66 CTATTTTCCTTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCCCGAAACAGTCTC
*
3872248 CAATCTTTTCTTGACGGGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACTTCAATGCTT
131 CAATCTTTTCTTGACGGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGACTTCAATGCTT
*** * *
3872313 TGGTGTTGGAAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTCTGTCTCTTAAATA
196 TGGTGTTGGAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTCTATCTCTCAAATA
* * * *
3872378 CGAAAAAGATGAACACTCATGCTGATCCCCATTCTTTTTAAGATTGGGCACCATAAACATAGTCT
261 CGAAAAAGATGAAAACTAATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* **
3872443 TCTCCTAAGGATACAACATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTCTCCTAACCAATTTT
326 TCTCATAAGGATACAACATATTGATGCCTTGGTTTCACAAGAAAGGCTTTCTCCTAACCAATTTT
*
3872508 TGAAAAGCCTATATTCATGCCTAAAATGAGACAAACATGGAATCTAGTAATGATCTTGATTCAAT
391 TGAAAAGCCTATATTCATGCCTAAAATAAGACAAACATGGAATCTAGTAATGATCTTGATTCAAT
3872573 TTGTGATTAGGCACTATAAACA-ATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTT
456 TTGTGATTAGGCACTATAAACATA-TTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTT
* *
3872637 GCATGGAAATCTTTTTTTTGCCCTGTTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAA
520 GCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAA
* * * * *
3872702 CATTGCTTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGGACCCCAAAAACACTTTCCCTTTAT
585 CATCGATTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGGA-ACCAAAAACACATTCCCTTCAT
* *
3872767 TAGGGTACAAGACCTTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATA
649 TAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGGTTTTTGATA
* * *
3872831 GAATCAAAAATTTTCTCTTAAATATGACAAATGTGAAAACGT-AAATTGATCCCCA-TTCTTTTC
714 GAATCAAAAATTTTCACTTAAATATGACAAATGTG-AAACCTCAAACTGATCCCCACTTCTTTTC
*
3872894 AAGATTGGGCACTAGAAAG
778 AAGATAGGGCACTAGAAAG
** * *
3872913 CATTCTCCTCATTT-GGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATC-TTTTCTTTGC
1 CATTCTCCTC-TTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGAAATCTTTTTCTTTGC
* * *
3872976 CTTATTTTCCTTTAAATCAAAGTTCAT-TCATT-AATAAGACAAACATCGATTCCCGTAACAGTC
65 CCTATTTTCCTTTAAATCAAAGTTCATAAC-TTAAATAAGACAAACATCGATTCCCGAAACAGTC
* ** * * * *
3873039 TCCACTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTTATTAGGATACATGGCATT-AATG
129 TCCAATCTTTTCTTGACGGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGAC-TTCAATG
* * ** *
3873103 TTTTGGTG-TGGCAAGAAATGCTTTTCTTTCTGCCATTTTTGATAGAATCAAAGTTTATCTCTCA
193 CTTTGGTGTTGG-AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTCTATCTCTCA
* * *
3873167 AATATGACAAACG-TGAAAACTAATACTGATCCCTATT-TTTGTCAAGATTGGGCACCATAAACA
257 AATACGA-AAAAGATGAAAACTAATACTGATCCCCATTCTTT-TCAAGATTGGGCACCATAAACA
* ** * * **
3873230 TAGTCTTGTCATTTGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTCCCC
320 TAGTCTTCTCATAAGGATACAACATATTGATGCCTTGGTTTCACAAGAAAGGCTTTCTCCTAACC
* * * * * *
3873295 AATTTTTGTATAGTCTATGTTCATGCCTAAAATAAGACAAACATGGATTCTAGTAATGATCTTGT
385 AATTTTTGAAAAGCCTATATTCATGCCTAAAATAAGACAAACATGGAATCTAGTAATGATCTTGA
* ** * *
3873360 TTCATTTTGTGATTAGGCACTATAAACATATTCTTTTCTTTAGGATAATTGATCTTAATTTTTTT
450 TTCAATTTGTGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAATTGATATTAATGTTTTT
* *
3873425 CTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
515 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAG
* * * * * * *
3873490 ACGAGCATCGATTCTCATAATAGTCTCTATTCTTTTCAAGGTTGGGAAGCGAAAACACATTCCCT
580 ACAAACATCGATTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGGAACCAAAAACACATTCCCT
3873555 TCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGGTTTTT
645 TCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGGTTTTT
* * *
3873620 GATAGAATCAAAATTTTTCACTTAAATATTACAAATGTGAAACCTCAAACTGATCCCCACTTTTT
710 GATAGAATCAAAAATTTTCACTTAAATATGACAAATGTGAAACCTCAAACTGATCCCCACTTCTT
3873685 TTCAAGATAGGGCAC
775 TTCAAGATAGGGCAC
3873700 CATAAACATA
Statistics
Matches: 693, Mismatches: 84, Indels: 21
0.87 0.11 0.03
Matches are distributed among these distances:
792 80 0.12
793 504 0.73
794 62 0.09
795 44 0.06
796 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (796 bp):
CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGAAATCTTTTTCTTTGCC
CTATTTTCCTTTAAATCAAAGTTCATAACTTAAATAAGACAAACATCGATTCCCGAAACAGTCTC
CAATCTTTTCTTGACGGGGAAGCCAAAACACATTCACTTCATTAGGATACAAGACTTCAATGCTT
TGGTGTTGGAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTCTATCTCTCAAATA
CGAAAAAGATGAAAACTAATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
TCTCATAAGGATACAACATATTGATGCCTTGGTTTCACAAGAAAGGCTTTCTCCTAACCAATTTT
TGAAAAGCCTATATTCATGCCTAAAATAAGACAAACATGGAATCTAGTAATGATCTTGATTCAAT
TTGTGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTG
CATGGAAATCTTTTCTTTGCCCTATTTTCCGTTAAATCAAAGTTCATACCTTAAATAAGACAAAC
ATCGATTCTCATAACAGTCTCCATTCCTTTCAAGGTTGGGAACCAAAAACACATTCCCTTCATTA
GGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGGTTTTTGATAGA
ATCAAAAATTTTCACTTAAATATGACAAATGTGAAACCTCAAACTGATCCCCACTTCTTTTCAAG
ATAGGGCACTAGAAAG
Found at i:3876049 original size:475 final size:475
Alignment explanation
Indices: 3872913--3883663 Score: 12411
Period size: 475 Copynumber: 22.6 Consensus size: 475
3872903 CACTAGAAAG
* *
3872913 CATTCTCCTCATTT-GGATAAATGATATTGATGATTTTCTTTTTCGTGGAAATCTTTTCTTTGCC
1 CATTCTCCTC-TTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * * *
3872977 TTATTTTCCTTTAAATCAAAGTTCATTCATT-AATAAGACAAACATCGATTCCCGTAACAGTCTC
65 -TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* ** * * * *
3873041 CACTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTTATTAGGATACATGGCATTAATGTTT
129 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * ** * * *
3873106 TGGTGTGGCAAGAAATGCTTTTCTTTCTGCCATTTTTGATAGAATCAAAGTTTATCTCTCAAATA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * *
3873171 TGACAAACGTGAAAACTAATACTGATCCCTATT-TTTGTCAAGATTGGGCACCATAAACATAGTC
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTT-TCAAGATTGGGCACCATAAACATAGTC
* * * * * *
3873235 TTGTCATTTGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTCCCCAATTT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTT
* * * * **
3873300 TTGTATAGTCTATGTTCATGCCTAAAATAAGACAAACATGGATTCTAGTAATGATCTTGTTTCAT
388 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
*
3873365 TTTGTGATTAGGCACTATAAACA
453 TTTGTGATTAGGAACTATAAACA
* ** * * * ** *
3873388 TATTCTTTTCTTTAGGATAATTGATCTTAATTTTTTTCTTTTGCGTGGAAATCTTTTCTTTGCCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
* * * *
3873453 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCATAATAGTCTCT
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * * *
3873518 ATTCTTTTCAAGGTTGGGAAGCGAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
3873583 GGTGTCACAAGAAAAGCTTTTCTTTCCACCGGTTTTTGATAGAATCAAAATTTTTCACTTAAATA
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * * * *
3873648 TTACAAATGTGAAACCTCAAACTGATCCCCACTTTTTTTCAAGATAGGGCACCATAAACATAATC
259 CAACAAACGTGAAAACTCATACTGATCCCCA-TTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * *
3873713 TTCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGAAAGGCTTTTTCCTCACCAATTT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTT
** * * * *
3873778 TTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAATATGGGTTCTAGTTATGATCTTCATTCAT
388 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* * * **
3873843 TTTGGGATTAGGAACAAAAAATT
453 TTTGTGATTAGGAACTATAAACA
* * * * * *
3873866 CACTCTCTTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTCCTTTACCA
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
* * * * * *
3873931 TATTTTCCTTTAAATCAGAGCTCATACGTTAAATAAGACAAGCATCGCTTCTCGTAATAGTCACC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * *
3873996 ATTCTTTTCTTGATTAGGAAG--AAAACACATTCCCTTCCTTAGGATACATAACATTGATGCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
** * * *
3874059 GGTGTCGCAAGAAAAGCTTTTCTTTCCGTCGGTTTTGATAGTATCAAAGTTTTTCTCTTAAATAC
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAC
* * * *
3874124 CACAAACATGAAAACTCATACTAAT-CCTATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
260 AACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
* * * *
3874188 CTCCTTAGGATACCTGATATTGATGCTTTGGTTTTGCAAGAAAGGCTTTTTGCC-AACCAATTTT
325 CTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTT-CCTCACCAATTTT
* * * * * **
3874252 TGTAAAGTTTAAGTTCATACCTCAAATGAGACAAATATGGGTTCTAGTAATGGTCTTCATTTTTT
389 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* * *
3874317 TTGGGATTAGGAACGACAAA-A
454 TTGTGATTAGGAACTATAAACA
* * * *
3874338 CATTCTCCTCATTAGGATAAATGGTATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTATCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCC
* * * * * * * *
3874403 TATTTTCCTTCAAATCAGAGTTGATACCTTAAATAACACAAGCATCAATTCTCATAATAGTCACC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * * *
3874468 ATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCGTTAGGATACATAACATTGATCCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3874533 AGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATAT
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-
* * *
3874598 GAA-AAACGTGAAAACTCATACTTATCCTTCAATTCTTTTCAAGATTGGGCACCATAAACATAGT
259 CAACAAACGTGAAAACTCATACTGATCC--CCATTCTTTTCAAGATTGGGCACCATAAACATAGT
* * ** *
3874662 CTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGCGGGAAAGGCTTTTTCCTCCCCAATT
322 CTTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATT
* * *
3874727 TTTGTAAAATCTAAGTTCATGCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTCA
387 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
3874792 TTTTGGGATTTGGAACTACAAA-T
452 TTTTGTGATTAGGAACTATAAACA
* * *
3874815 CATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
* * * *
3874880 TATTTTCCTTTAAATCAAAGTTCATATCTTAAATACGACAAGCATCGATTCTCGTAATAGTCTGC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * * * *
3874945 ATTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCCTTAAGATACAAGACATTAAGGCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3875010 GGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTTGATAGAATTAAAG-TTGTCTCTTAAATAT
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-
* * * * * * *
3875074 GAA-AAACATGAACACTCGTACTGATCCCCATTTTTTTCAAGATTGGGCACCATAAGCCTAGTCT
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* * ** * * *
3875138 TCTCCTAATGATATATCATATTGATACCTTGGTTTCACAAGAAAGGCATTTTCCTCACCAATTTT
324 TCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTTT
** * * *
3875203 CATAAAGTTTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATT
389 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
*
3875268 TTGTGATTAGGCACTATAAACA
454 TTGTGATTAGGAACTATAAACA
* * * * * * * *
3875290 CAATCTCTTATTTAGGATAAATGATAATGATGATTTTCTTTTACTTAGAAATCTTTTCTTTACCG
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
* * * * * *
3875355 TA------TTTAGGAT-AAA--T--GA---T-AATAAGATAAGCTTTCAATTCTCCTAACAGTCT
65 TATTTTCCTTTA-AATCAAAGTTCATACCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTCT
* *
3875405 CCATTCTTTTCAACATTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
128 CCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
3875470 TTTGTGTCGTAAGTAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * *
3875535 ACAACAAACGTGAATACTTATATTGATCCCCATTCTTTTCAAGATTGGGCACCATAAGCACAGTC
258 ACAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * * *
3875600 CTCTCTTTAGGTTACGCT-ATATTGATGCTTTGGTTTCGCAAGAAATGCATTTTTCC-CACCAAT
323 TTCTCCTTAGGATAC-CTCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAAT
* * ** * *
3875663 TTTTGTAAAGTTTAGGTTTGTGCCTCAAAGGAGACAAACATGGATTCTAGTGATGATCTTC-TTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT-
* *
3875727 CATTTTGTGACTAGGCACTATAAACA
450 CATTTTGTGATTAGGAACTATAAACA
* **
3875753 CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
* * *
3875818 ATTTTCCTTTAAATCAAATTTCATACCTTAAATAAGACAAGTATCGATTCTCATAACAGTCTCCA
66 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
3875883 TTCTTTTCAAGGTTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCTTTT
131 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * *
3875948 GTGTCGTAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTTTTAAATACA
196 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACA
* * * *
3876013 ACAAATGTGAATACTTATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAGCATAGTCTTC
261 ACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTC
* * * * *
3876078 TCTTTAGGTTACGCT-ATATTGATGCTTTGGTTTCGCAAGAAATGCATTTTTCC-CACTAATTTT
326 TCCTTAGGATAC-CTCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAATTTT
* * * ** * *
3876141 TATAAAGTTTAGGTTTGTGCCTTAAAAGAGACAAACATGGATTCTAGTAATGATCTTC-TTCCAT
389 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT-CAT
* *
3876205 TTTGTGACTAGGCACTATAAACA
453 TTTGTGATTAGGAACTATAAACA
* ** *
3876228 CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTCTGCATGGAAATCTTTTCTTTGCCT
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
* *
3876293 ATTTGCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCGTAACAGTCTCCA
66 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
3876358 TTCTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
131 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * *
3876423 GTGTCGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGAAAGAGTCAAAGTTTGTCTCTCT-AATAC
196 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAATAC
* * * * * * * *
3876487 GACTAACGTGAATACTCATACTGATCCCCCTTTTTTTTCAAAATTTTGGGCACCATGAACATGGT
260 AACAAACGTGAAAACTCATACTGAT-CCCCATTCTTTTCAAGA--TTGGGCACCATAAACATAGT
* * *
3876552 CTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAATT
322 CTTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATT
* * * * * * *
3876617 TTTGTAAACTCTATGTCCATGCCTCAAAAGACACAAACATGGATTCCAGTAATGATCTTGATTCA
387 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * *
3876682 TTTTGTGGTTTGGCACTATAAACA
452 TTTTGTGATTAGGAACTATAAACA
* *
3876706 CATTCTCCTCTTTAGGATAATTGATATTGATG-TCTTTCTTTTGCATGGGAATCTTTTCTTTGCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGAT-TTTCTTTTGCATGGAAATCTTTTCTTTG-C
* *
3876770 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACATGCATCGATTCTCATAACAGTCTC
64 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
*
3876835 CATTCTTTTCAAGATTAGGAAG-CAAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
129 CATTCTTTTCAAGATTGGGAAGCCAAA-ACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * *
3876899 TTGGGGTCGTAAGAAAAGCTTTTCTTTCCATCGCTTTTGATAGAATCAAAGTTTATCTCTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * ** * * * *
3876964 AAAGACAAACCTGAATACTCATACCAATCCCCAATCTCTTCAGGATTTGGCACCAT-AACATAGT
258 ACA-ACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGT
* * * * * *
3877028 CTTCTCAC-TAGGATACCTAATATTGATGCTTTGCTTTTGCAAGAAAGGTTTTTTTCTCACCAAT
322 CTTCTC-CTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAAT
* * * * * *
3877092 TTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACCAATATGGGTTCTAGTAATGATATTCATTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * **
3877157 ATTTTGGGATTAGGAACTACAAATG
451 ATTTTGTGATTAGGAACTATAAACA
* * *
3877182 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTTTTTGCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTG-C
*
3877247 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATTCTCGTAACAGTCTC
64 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * * * * *
3877312 CATTATTTTCTTA-ATTGGGAAGACAAAACACATTCCC-T-ACTAAGATACAAGACATTAATGCT
129 CATTCTTTTC-AAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * ** * **
3877374 TTGGTGTCGCAAGGAAAGCTTTTTTTTCTATTGTTTTTGATAGAATCAAAGTTTATCTCCCAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * * * * * *
3877439 ATGACAAACATGAATACACATACGGATCCCCATTCTTTTCAAGATTTGGCACCATAAATATAGTC
258 ACAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * * * * * * *
3877504 TTCTCATTTGGATACGTGATGTTGAAGCTTTGGTTTTGCAAGAAATGCATTTTT-CTCACCAATT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAATT
* * * * *
3877568 TTTGTAAAGTCTAAGTTCGTGCCTCAAAAGAGGCAAACATGGGTTTTAGTAATGATCTTCATTCA
387 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC-
* *
3877633 ATTTAG-GATTAGGAACTACAAACA
451 ATTTTGTGATTAGGAACTATAAACA
** * ** * *
3877657 -ATTTCTCCTCAATAGGGTATGTGATATTGATGATTTTCTTTTGCTTGGATATCTTTTCTTTGCC
1 CA-TTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-C
* *
3877721 CTATTTTCCTTTAAATCAAAGTTCATACATTAAATAAGATAAGCATCGATTCTCGTAACAGTCTC
64 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * ** * * * *
3877786 CATTCTTCTCAAGGTTGGGAAGCCAAAACACATTTGCTTTATTCGGATACAAGACATTGCTGCTT
129 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
** * * * *
3877851 TGGTCCCGCAAGAAAGGCTTTTCTTTCCACCATTTTTGATAGAATCATAA-TTTTTCTCTTCAAT
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCA-AAGTTTGTCTCTTAAAT
* * * * * *
3877915 ATGAA-AAATGTGAAAACTCATACTGATCCCCGTTCTTTTCAGGATTAGGCACCATAAACAAAGT
258 A-CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGT
* * * * * * *
3877979 TTTCTCCTAACGATACATCATATTGATGCCTTAGTTTCGCGAGAAAGGCTTTTTCAC-CACCATT
322 CTTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTC-CTCACCAAT
** * * * *
3878043 TTTTGTAAAGAATATGTTCAAGCCTCAAAGGAGACAAACATGGGTTCTAGTAATGATCTTCATTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * *
3878108 ATTTTGGGATTAGGAACAACAAA-G
451 ATTTTGTGATTAGGAACTATAAACA
* * * *
3878132 CATTCTCCTCATTAGGATAAATGATATTGATGACTTTTTTTTTCCATGGAAATATTTTCTTTGCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTG-C
* *
3878197 CTATTTTCCTTTAAATCAAAGTTCATACCTTCAATAAGACAAGCATCGATTCTCATAACAGTCTC
64 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
** * * * * *
3878262 CATTCTTTTCTTGACTGGGAAGCCAAAACACATTCACTTCCTTAGGATACAAGACATTAATGCTT
129 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * *
3878327 TGGTGTCGCAAGAAAAGCTTTTCCTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAAAA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
3878392 TGAA-AAACATGAACACTCATATTGATCCCTATTTTTTTCAAGATTGGGCACCATAAACATAGTC
259 -CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * ** *
3878456 TTTTCCTAAGGATACAACATATTGATGCCTTGGTTTTGCAAGAAAGGCTTTTTCCTCACCAATTT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTT
* * * * *
3878521 TTGAAAAGCCTATGTTCATGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCAT
388 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
3878586 TTTGTGATTA-GATACTATAAACA
453 TTTGTGATTAGGA-ACTATAAACA
* * * *
3878609 CATTCTCCTCTTTGGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
* * * * *
3878674 TATTTTCCGTTAAATCAAAGTTCATACCTAAAATAAGACAAGCATCGCTTCTCATAACAGTCTCT
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * * * *
3878739 ATTCCTTTCAAGGTTGGAAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3878804 GGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAAATTT-TCTCTTAAATA
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC-AAAGTTTGTCTCTTAAATA
** * * * * *
3878868 TGACAAATGTGAAAACTTAAATTGATCCCTATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* * * * *
3878933 TCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGTAAGGCTTTTTCCTCACCAATTTT
324 TCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTTT
** * * * *
3878998 TGTAAAGTCTAAGTTTGTACCT-AAATTGAGACAAACA-GGGTTCTAGTACTAATCTTCATTCAT
389 TGTAAAGTCTAAGTTCATGCCTCAAA-TGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
* **
3879061 TTTCG-GATTAGGAACTACAAATG
453 TTT-GTGATTAGGAACTATAAACA
* *
3879084 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCA
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
* * * *
3879149 TATTTTCCTTTAAATCAAAGTTCATTCCTT-AATAAGAGAAACATCGATTCCCGTAACAGTCTCC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* ** * *
3879213 ACTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATCT-GGATACATGACATTAATGTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT-TAGGATACATGACATTGATGCTT
* * * *
3879277 TGGTGTCGCCAGAAATGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAATA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
3879342 CGACAAACGTGAAAACTCATACTGATCCCCATTTTTTTCAAGATTCGGCACCATAAACATAGTCT
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* * * * *
3879407 TGTCATTTGGATACATCATATTGGTGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTTT
324 TCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTTT
* * * *
3879472 TGAAAAGTCTATGTTCATGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCATT
389 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
*
3879537 TTGTGATTAGGTACTATAAACA
454 TTGTGATTAGGAACTATAAACA
* * * *
3879559 CATTCTCCTCATTTTGTGAT-TA-GGTA---ATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGC
1 CATTCTCCTC-TTTAG-GATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-
*
3879619 CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
63 CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
* * *
3879684 CCATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCT
128 CCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
3879749 TTGGGGTCACAAGAAAACCTTTTCCTTCCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * * * *
3879814 ATGACAAATGGGAAAACTCAAACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAACATAGTC
258 ACAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * * *
3879879 TTCTCCTAAGGATTCATCATATTGATGCCTTGGTTTCACAAGTAAGGCTTTTTCCTCACCAATTT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTT
** * * * *
3879944 TTGTAAAGTCTAAGTTTGTACCT-AAGTTGAGACAAACA-GGGTTCTAGTACTGATCTTCATTCA
388 TTGTAAAGTCTAAGTTCATGCCTCAA-ATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* **
3880007 TTTTCG-GATTAGGAACTACAAATG
452 TTTT-GTGATTAGGAACTATAAACA
* *
3880031 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTGCCA
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
* * *
3880096 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCTTC-ACTTCTCGTAATAGTCAC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGA-TTCTCGTAACAGTCTC
* ** * *
3880160 CATTGTTTTCCTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACATTGATGCTT
129 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* *
3880225 TGGTGTCGCAAGAAAAGTTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTTTCTCTTAAATA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
3880290 CCATAAACATGAAAACTCATACTAATCCCCATT-TTTTCAAAATTGGGCACGATAAACATAGTCT
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* * * *
3880354 TCTCCTTAGGATTCCTGATATTGATGCTTTGGATTT-GCAAGAAAGGCTTTTTTCC-CACCAACT
324 TCTCCTTAGGATACCTCATATTGATGCCTTGG-TTTCGCAAGAAAGGC-TTTTTCCTCACCAATT
* * * ** *
3880417 TTTGTAAAGTATAAGTTCGTTCCTCAAATGAGACAAATTTGGCTTCTAGTAATGATCTTCATTCA
387 TTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCA
* * * *
3880482 TTTTGGGATTAGGAACGACAAA-G
452 TTTTGTGATTAGGAACTATAAACA
* * *
3880505 CATTCTCCTCTTTAGGATAAATGGTATTGATGATTTTCTTTTGCATGGGAATCTTTTCTTTATCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCC
* * * * * *
3880570 TATTTCCCTTTAAATCAAAGTTCATACCTAAAATAAGACAAGCATCAATTCTCATAATAGTCACC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * *
3880635 ATTCTTTTCTTGATTTGGAAGCCAAAACACATTCCCCTCATTAGGATACATAACATTGATGCTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *
3880700 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGTTTTTCTCTTAAATAT
195 GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-
* * *
3880765 GAA-AAACGTGAAAACTCATACTTATCCCCCCATTCTTTTCAAGATTGGGCACCATAAACGTAGT
259 CAACAAACGTGAAAACTCATACTGAT--CCCCATTCTTTTCAAGATTGGGCACCATAAACATAGT
* * ***
3880829 CTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGTGGGAAAGGCTTTTTCCTC-CCTAAT
322 CTTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACC-AAT
* * * * *
3880893 TTTTGTAAAATCTAATTTCATCCCTCAAATGAGACAAACATGGGTTCTAGTAATGGTCTTCATTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * *
3880958 ATTTTGGGATTTGGAACTACAAA-G
451 ATTTTGTGATTAGGAACTATAAACA
* * *
3880982 CATTCTCCTCATTAGGATAAATGATATTGAAGATTTTCTTTTGCATGGAAATCTTTTCTTTACCT
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-
* *
3881047 TATTTTCCTTTAAATCAAAGTTCATAGCTTAAATACGACAAGCATCGATTCTCGTAACAGTCTCC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* ** * * * * *
3881112 ATTCATTTCTTGACTGGGAAGCAAAAACACATTCCCTTGC-TTAGGATACAAGACATTAAGGCTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTT-CATTAGGATACATGACATTGATGCTT
* * *
3881176 TGGTGTCGCAAGAAAATCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGTCTCTAAAATA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * * *
3881241 TGAA-AAACATGAACATTCATACTGATCCCTATTTTTTTCAAGATTGGGCACCATAAACATAGTC
259 -CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * * * *
3881305 TTCTCCTAAGAATACATCATATTGATGCCTTGGTTTCACAAAAAAGGCATTTTCCTCACCAATTT
323 TTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTT
* * * *
3881370 TCGTAAAGTCTATGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAGTGATCTTCATTCAT
388 TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCAT
*
3881435 TTTGTGATTAGGCACTATAAACA
453 TTTGTGATTAGGAACTATAAACA
* * * * * * *
3881458 CAATCTCCTATTTAGGATAAATGATAATGATGATTTTCTTTTACTTAGAAATCTTTTCTTTACCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT-GCC
* * * * * *
3881523 TA------TTTAGGAT-AAA--T--GA---T-AATAAGATAAGCTTTCGATTCTCCTAATAGTCT
65 TATTTTCCTTTA-AATCAAAGTTCATACCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTCT
*
3881573 CCATTCTTTTCAAGATTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
128 CCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * * *
3881638 TTTGTGTCGTAAGGAAAGCTTTTCTTTCTACCATTTTTGATGGAATCAAAGTTTGTCTTTTAAAT
193 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
** * * * * *
3881703 ACAGTAAACGTGAATACTTATACTAATCCCTATTCTTTTCAAGATTGGGCACCATAAACGTAGTC
258 ACAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTC
* * * *
3881768 TTCTCTTTAGGATACGC-CATATTGATGCTTTGGTTTCGCAACAAATGCATTTTTCC-CACCAAT
323 TTCTCCTTAGGATAC-CTCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAAT
* * * * *
3881831 TTTTGTAAAGTTTAGGTTTATGCCTTAAAAGAGACAAACATGGATTCTAGTAATGATCTTC-TTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT-
* *
3881895 CATTTTGTGACTAGGCACTATAAACA
450 CATTTTGTGATTAGGAACTATAAACA
* ** * ***
3881921 CATTCTCCTCTTTCGGATAAATGATATTGACCATTTTCTTCTGCACAAAAATCTTTTCTTTGCCT
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
*
3881986 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
66 ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
3882051 TTCTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
131 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
* * * * **
3882116 GTGTCGCAAGGAAAGCTTTTCTTTCCATCGTTTTTGATAGAGTCAAAGTTTGTCTCTCAAATATG
196 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACA
* * * * * ** * *
3882181 ACTAACATGAATACTCATACTAATCCCCATTCTTTTCAAGAGTAAGCAGCATAAACATAGTCCTC
261 ACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTC
* * * * * * * *
3882246 TCATTATGATGCACT-ATATTAATGCTTTGGTTTCGCAAGAAATGCATTTTTAC-CACCAATATT
326 TCCTTAGGATAC-CTCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAATTTT
* * * * * * *
3882309 TGTAAAGTCTAGGCTCGTGCCTCAAAAGAGACAAACATCGATTCTTGTAATGATCTTCATTCGTT
389 TGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATT
* *
3882374 TTGCGATTAGGCACTATAAACA
454 TTGTGATTAGGAACTATAAACA
* * *
3882396 CATTCTCGTCTTTCGGATAAATGATATTTATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
* * * *
3882461 TATTTTCATTTAAATCAAATTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAATAGTCTCT
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* * *
3882526 ATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAAGATACATGATGACATTGATTC
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC---ATGACATTGATGC
* * * * *
3882591 TTTGGTGTCGCTAGAAAAGCTTTTCTTTCCACCATTTTTGATTGAATCAAAGTTTGCCACTTAAA
192 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * **
3882656 TACAACAAACATGGATACTCA-AATGGATCCCCATTCTTTTCTTGATTGGGCACCATAAACATAG
257 TACAACAAACGTGAAAACTCATACT-GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAG
* * * * *
3882720 TCTTCTCCTTAGTATACCTAATATTGATGCTTTGGTTTCGCATGAAAGGCTTTTTTCTCACCAAT
321 TCTTCTCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAAT
* *
3882785 TTTTGTAAAGTCTAAGTTCATGTCTCAAATGAGACAAACATGGATTCTAGTATTGATCTTCATTC
386 TTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTC
* *
3882850 ATTTTATGATTAGGCACTATAAACA
451 ATTTTGTGATTAGGAACTATAAACA
* * * * *
3882875 CGTTCACCTTTTTAGGCTAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-CC
* * * ** *
3882940 TACTTTCTTTTAAGTCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCAAAATAGTCTCC
65 TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
** * * * *
3883005 ATTCTTTTCAAGATTGGGAAGTGAAAACATATTCCTTTTATTAGGATACATGACA-TGATGGTTT
130 ATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * ** * * * * * *
3883069 GGGGCCAAAAGAAAAGCTTTTCTTTCAAGATACATGACATTTTTTATTGAATCAAAGTTTGCCAC
195 GGTGTCGCAAGAAAAGCTTTTCTTTC------CA--CCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * * *
3883134 TTAAATACGACAAACATGAATACTCA-AATGGATCCCCATTTTTTTCATGATTGGGCACCATAAA
252 TTAAATACAACAAACGTGAAAACTCATACT-GATCCCCATTCTTTTCAAGATTGGGCACCATAAA
*** * ** * **
3883198 CATAGTCTTCTCCTTAGGATACAC-CATAAACATAG-TTTTCTTT--CATGATTGGCTTTTTCCT
316 CATAGTCTTCTCCTTAGGATAC-CTCATATTGAT-GCCTTGGTTTCGCAAGAAAGGCTTTTTCCT
* * * * * *
3883259 CACCAATTTTAGAAAAGCCTATGTTCATGCCTTAAGTGAGACAAACATGGA-TCTAGTAATGATC
379 CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATC
* * *
3883323 TTGATTCAATTTGTGATTAGGCACTATAAACA
444 TTCATTCATTTTGTGATTAGGAACTATAAACA
* * *
3883355 -ATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCC
1 CA-TTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTG-C
* * ** *
3883419 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGATAAGCATCAATTCTTATAACAATCTC
64 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * *
3883484 CATTCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTT
129 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
3883549 TGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAAAA
194 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
** * * * *
3883614 TGACAAATGTGAAAACTTAAACTGATCCCCATTCTTTTCATGATTGGGCA
259 CAACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCA
3883664 GTAGAAAGCA
Statistics
Matches: 8881, Mismatches: 1230, Indels: 332
0.85 0.12 0.03
Matches are distributed among these distances:
461 10 0.00
462 141 0.02
463 595 0.07
464 13 0.00
465 1 0.00
466 1 0.00
467 5 0.00
468 15 0.00
469 7 0.00
470 14 0.00
471 6 0.00
472 253 0.03
473 522 0.06
474 1103 0.12
475 2106 0.24
476 1568 0.18
477 1011 0.11
478 489 0.06
479 589 0.07
480 219 0.02
481 92 0.01
483 119 0.01
484 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCT
ATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTG
GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACA
ACAAACGTGAAAACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTC
TCCTTAGGATACCTCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTCACCAATTTTTG
TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGAACTATAAACA
Found at i:3876051 original size:159 final size:158
Alignment explanation
Indices: 3875405--3876063 Score: 376
Period size: 158 Copynumber: 4.2 Consensus size: 158
3875395 CTAACAGTCT
*
3875405 CCATTCTTTTCAACATTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAA-CCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
3875470 TTTGTGTCGTAAGTAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTTTTAAA
65 TTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTATACTTTTAAA
* *
3875534 TACAACAAACGTGAATACTTAT-ATTGATCC
129 TACAACAAATGTG-ATACTTATAACTGATCC
* * * * * *
3875564 CCATTCTTTTCAAGATTGGGCACC-ATAAGCACAGT-CCTCTCTTTAGGTTACGCT-ATATTGAT
1 CCATTCTTTTCAAGATTGGGAACCAAT-A-CACATTCCCT-TCATTAGGATAC-ATGACATTGAT
* * * * ** * * * *
3875626 GCTTTGGTTTCGCAA-GAAATGCATTT-TTCCCACCAATTTTTG-TAAAGTTTAGGTTTGTGCCT
62 GCTTTTGTGTCGCAAGGAAA-GCTTTTCTTTCCACC-ATTTTTGATAAA-TCAAAGTTTATACTT
** * * * * *
3875688 CAAAGGAGACAA-ACATG-GATTC-TAGTGA-TGATCT
124 TTAA--ATACAACAAATGTGATACTTA-TAACTGATCC
* ** * * * * * * * * *
3875722 TC-TTCCATTTT-GTGACTAGGCACTATAAACACATTCTCC-TCTTTCGGATAAATGATATTGA-
1 CCATT-C-TTTTCAAGATTGGGAACCA-ATACACATTC-CCTTCATTAGGATACATGACATTGAT
* * * * * * * * *
3875783 CCATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTATTTTCCT-TTAAATCAAA-TTTCATAC-
62 GC-TTTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTT--TGATAAATCAAAGTTT-ATACT
* * * * * * *
3875844 CTTAAATA-AGACAAGTATCGATTCTCATAACAG-TCT
123 TTTAAATACA-ACAAATGT-GATACTTATAACTGATCC
*
3875880 CCATTCTTTTCAAGGTTGGGAAGCCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
1 CCATTCTTTTCAAGATTGGGAA-CCAATACACATTCCCTTCATTAGGATACATGACATTGATGCT
*
3875945 TTTGTGTCGTAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTAT-CTTTTAAA
65 TTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTATACTTTTAAA
3876009 TACAACAAATGTGAATACTTAT-ACTGATCC
129 TACAACAAATGTG-ATACTTATAACTGATCC
*
3876039 CCATTCTTTTCAAGATTGGGCACCA
1 CCATTCTTTTCAAGATTGGGAACCA
3876064 TAAGCATAGT
Statistics
Matches: 362, Mismatches: 93, Indels: 91
0.66 0.17 0.17
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 2 0.01
157 27 0.07
158 161 0.44
159 152 0.42
160 11 0.03
161 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTGGGAACCAATACACATTCCCTTCATTAGGATACATGACATTGATGCTT
TTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATAAATCAAAGTTTATACTTTTAAATA
CAACAAATGTGATACTTATAACTGATCC
Found at i:3876085 original size:159 final size:159
Alignment explanation
Indices: 3875405--3876116 Score: 366
Period size: 159 Copynumber: 4.5 Consensus size: 159
3875395 CTAACAGTCT
* * * *
3875405 CCATTCTTTTCAACATTGGGAAGCCA-ATA-CACATTC-CCTTCATTAGGATACATGACATTGAT
1 CCATTCTTTTCAAGATTGGGCA-CCATA-AGCACAGTCTCC-TCTTTAGGATACATGACATTGAT
* * *
3875467 GCTTTTGTGTCGTAAGTAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTTTT
63 GCTTTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTATACTTTT
* *
3875531 AAATACAACAAACGTGAATACTTAT-ATTGATCC
127 AAATACAACAAATGTG-ATACTTATAACTGATCC
* * *
3875564 CCATTCTTTTCAAGATTGGGCACCATAAGCACAGTC-CTCTCTTTAGGTTACGCT-ATATTGATG
1 CCATTCTTTTCAAGATTGGGCACCATAAGCACAGTCTC-CTCTTTAGGATAC-ATGACATTGATG
* * * * ** * * * * *
3875627 CTTTGGTTTCGCAA-GAAATGCATTT-TTCCCACCAATTTTTG-TAAAGTTTAGGTTTGTGCCTC
64 CTTTTGTGTCGCAAGGAAA-GCTTTTCTTTCCACC-ATTTTTGATAAA-TCAAAGTTTATACTTT
* * * * * *
3875689 AAAGGAGACAA-ACATG-GATTC-TAGTGA-TGATCT
126 TAA--ATACAACAAATGTGATACTTA-TAACTGATCC
* ** * * * * * * * * *
3875722 TC-TTCCATTTT-GTGACTAGGCACTATAAACACATTCTCCTCTTTCGGATAAATGATATTGA-C
1 CCATT-C-TTTTCAAGATTGGGCACCATAAGCACAGTCTCCTCTTTAGGATACATGACATTGATG
* * * * * * * * *
3875784 CATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CTATTTTCCT-TTAAATCAAA-TTTCATAC-C
64 C-TTTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTT--TGATAAATCAAAGTTT-ATACTT
* * * * * *
3875845 TTAAATA-AGACAAGTATCGATTCTCATAACAG-TCT
125 TTAAATACA-ACAAATGT-GATACTTATAACTGATCC
* * * *
3875880 CCATTCTTTTCAAGGTTGGGAAGCCA-ATA-CACATTC-CCTTCATTAGGATACATGACATTGAT
1 CCATTCTTTTCAAGATTGGGCA-CCATA-AGCACAGTCTCC-TCTTTAGGATACATGACATTGAT
*
3875942 GCTTTTGTGTCGTAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTAT-CTTTT
63 GCTTTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTATACTTTT
3876006 AAATACAACAAATGTGAATACTTAT-ACTGATCC
127 AAATACAACAAATGTG-ATACTTATAACTGATCC
* * * * *
3876039 CCATTCTTTTCAAGATTGGGCACCATAAGCATAGTCTTCTCTTTAGGTTACGCT-ATATTGATGC
1 CCATTCTTTTCAAGATTGGGCACCATAAGCACAGTCTCCTCTTTAGGATAC-ATGACATTGATGC
* *
3876103 TTTGGTTTCGCAAG
65 TTTTGTGTCGCAAG
3876117 AAATGCATTT
Statistics
Matches: 404, Mismatches: 102, Indels: 94
0.67 0.17 0.16
Matches are distributed among these distances:
154 1 0.00
155 3 0.01
156 2 0.00
157 25 0.06
158 165 0.41
159 192 0.48
160 11 0.03
161 5 0.01
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.38
Consensus pattern (159 bp):
CCATTCTTTTCAAGATTGGGCACCATAAGCACAGTCTCCTCTTTAGGATACATGACATTGATGCT
TTTGTGTCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATAAATCAAAGTTTATACTTTTAAAT
ACAACAAATGTGATACTTATAACTGATCC
Found at i:3883944 original size:316 final size:317
Alignment explanation
Indices: 3883369--3883975 Score: 869
Period size: 316 Copynumber: 1.9 Consensus size: 317
3883359 CTCCTCTTTA
* * *
3883369 GGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAA
1 GGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAA
* * ** *
3883434 TCAAAGTTCATACCTTAAATAAGATAAGCATCAATTCTTATAACAATCTCCATTCCTTTCAAGGT
66 TCAAAGTTCATACCTTAAATAAGACAAACATCAATTCACATAACAATCTCCATTCCTTTCAAGAT
* *
3883499 TGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAA
131 TGGGAAGCCAAAACACATTCCCATCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAA
* * * *
3883564 AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAAAATGACAAATGTGAAAA
196 AGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAATTTTTCTCTCAAAAACGACAAACGTGAAAA
* *
3883629 CTTAAACTGATCCCCATTCTTTTCATGATTGGGCAGTAGAAAGCATTCTCCTTATTT
261 CTCAAACTGATCCCCATTCTTTTCAAGATTGGGCAGTAGAAAGCATTCTCCTTATTT
* *
3883686 GGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAA
1 GGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAA
* * * * * * **
3883751 TCAAAGTTCATTCCTT-AATAAGACAAACATCATTTCACGTAACAGTCTCTACTT-TTTTCTTGA
66 TCAAAGTTCATACCTTAAATAAGACAAACATCAATTCACATAACAATCTCCA-TTCCTTTCAAGA
* * *
3883814 TTGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAA
130 TTGGGAAGCCAAAACACATTCCCATCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAA
* * *
3883879 ATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTT-TCTCAAATACGACAAACGTGAA
195 AAGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAATTT-TTCTCTCAAAAACGACAAACGTGAA
* *
3883943 AACTCACACTGATCCCCATTTTTTTCAAGATTG
259 AACTCAAACTGATCCCCATTCTTTTCAAGATTG
3883976 TGCACCATAA
Statistics
Matches: 254, Mismatches: 34, Indels: 5
0.87 0.12 0.02
Matches are distributed among these distances:
316 175 0.69
317 79 0.31
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (317 bp):
GGATAAATGATATTAATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAA
TCAAAGTTCATACCTTAAATAAGACAAACATCAATTCACATAACAATCTCCATTCCTTTCAAGAT
TGGGAAGCCAAAACACATTCCCATCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAA
AGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAATTTTTCTCTCAAAAACGACAAACGTGAAAA
CTCAAACTGATCCCCATTCTTTTCAAGATTGGGCAGTAGAAAGCATTCTCCTTATTT
Found at i:3883965 original size:158 final size:155
Alignment explanation
Indices: 3883498--3883975 Score: 355
Period size: 158 Copynumber: 3.0 Consensus size: 155
3883488 CCTTTCAAGG
* * * *
3883498 TTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAA
1 TTGGGAAGCCAAAACACATTCCC-TCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAA
* * * *
3883563 AAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAA-AATGACAAATGTGAA
65 ATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTTT-TC-TAAATAA-GACAAACGTGAA
* *
3883627 AACTTAAACTGATCCCCATTCTTTTCATGA
127 AACTCACACTGATCCCCATT-TTTTCATGA
* * * * * * * * * * **
3883657 TTGGGCAG-TAGAAA-GCATTCTCCTTATTTGGATAAATGATATTGATGATTTT-CTTTTGCGTG
1 TTGGGAAGCCA-AAACACATTC-CCTCATTAGGATACATGACATTGATG-TTTTGGTGTCGC-AA
* *** * * * *
3883719 GAAAT-CTTTTCTTTGCC-CCATTTTCCTTTA-AATCAAAGTTCATTCCTTAATAAGACAAACAT
62 GAAATGCTTTTCTTT-CCACCGTTTT-AGATAGAATCAAAGTT-TTTTCTAAATAAGACAAACGT
* ** * * * *
3883781 --CATTTCACGTAACAG-TCTCTACTTTTTTCTTGA
124 GAAAACTCAC---ACTGATCCCCA-TTTTTTCATGA
3883814 TTGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAA
1 TTGGGAAGCCAAAACACATTCCC-TCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAA
*
3883879 ATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTTTCTCAAATACGACAAACGTGAAA
65 ATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTT-TTTCT-AAATAAGACAAACGTGAAA
*
3883944 ACTCACACTGATCCCCATTTTTTTCAAGA
128 ACTCACACTGATCCCCA-TTTTTTCATGA
3883973 TTG
1 TTG
3883976 TGCACCATAA
Statistics
Matches: 229, Mismatches: 66, Indels: 48
0.67 0.19 0.14
Matches are distributed among these distances:
155 3 0.01
157 47 0.21
158 121 0.53
159 53 0.23
161 5 0.02
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (155 bp):
TTGGGAAGCCAAAACACATTCCCTCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAAA
TGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTTTTCTAAATAAGACAAACGTGAAAACT
CACACTGATCCCCATTTTTTCATGA
Found at i:3884212 original size:792 final size:791
Alignment explanation
Indices: 3882892--3884455 Score: 2239
Period size: 792 Copynumber: 2.0 Consensus size: 791
3882882 CTTTTTAGGC
* * *
3882892 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCTTTTAAGTCA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCACTTTCCTTTAAATCA
* *
3882957 AAGTTCATACCTTAAATAAGACAAGCATCGATTCTCAAAATAGTCTCCATTCTTTTCAAGATTGG
66 AAGTTCATACCTTAAATAAGACAAACATCGATTCTCAAAACAGTCTCCATTCTTTTCAAGATTGG
** * ** *
3883022 GAAGTGAAAACATATTCCTTTTATTAGGATACATGACATGATGGTTTGGGGCCAAAAGAAAAGCT
131 GAAGCCAAAACACATTCCCATCATTAGGATACATGACATGATGGTTTGGGGCCAAAAGAAAAGCT
** * *
3883087 TTTCTTTCAAGATACATGACATTTTTTATTGAATCAAAGTTTGCCACTTAAATACGACAAACATG
196 TTTCTTTC-----ACA-GACATTTTAGATAGAATCAAAGTTTGCCACTCAAATACGACAAACATG
* * *
3883152 AATACTCAAATGGATCCCCATTTTTTTCATGATTGGGCACCATAAACATAGTCTTCTCCTTAGGA
255 AAAACTCAAATGGATCCCCATTTTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGA
* * * **
3883217 TACACCATAAACATAGTTTTCTTTCATGATTGGCTTTTTCCTCACCAATTTTAGAAAAGCCTATG
320 TACACCATAAACATAGCTTGCTTTCAAGAAAGGCTTTTTCCTCACCAATTTTAGAAAAGCCTATG
* *
3883282 TTCATGCCTTAAGTGAGACAAACATGGATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCAC
385 TTCATGCCTAAAATGAGACAAACATGGATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCAC
3883347 TATAAACAATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTT
450 TATAAACAATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTT
* * *
3883412 CTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGATAAGCATCAATTCTTATAA
515 CTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCACAA
3883477 CAATCTCCATTCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATT
580 CAATCTCCATTCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATT
* * *
3883542 GATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAATTTTTCTC
645 GATGCTTTGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAATTTTTCTC
* *
3883607 TTAAAAATGACAAATGTGAAAACTTAAACTGATCCCCATTCTTTTCATGATTGGGCAGTAGAAAG
710 TTAAAAATGACAAATGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCAGTAGAAAG
3883672 CATTCTCCTTATTTGGA
775 CATTCTCCTTATTTGGA
* * *
3883689 TAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAATCA
1 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCACTTTCCTTTAAATCA
* * * **
3883754 AAGTTCATTCCTT-AATAAGACAAACATC-ATT-TCACGTAACAGTCTCTACTT-TTTTCTTGAT
66 AAGTTCATACCTTAAATAAGACAAACATCGATTCTCA--AAACAGTCTCCA-TTCTTTTCAAGAT
* * * **
3883815 TGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAAA
128 TGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACA-TGATGGTTTGGGGCCAAAAGAAA
* * * *** *
3883880 TGCTTTTCTTTC-CA-CCGTTTTAGATAGAATCAAAGTTTGTTTCTCAAATACGACAAACGTGAA
192 AGCTTTTCTTTCACAGACATTTTAGATAGAATCAAAGTTTGCCACTCAAATACGACAAACATGAA
* * * * *
3883943 AACTCACACT-GATCCCCATTTTTTTCAAGATTGTGCACCATAAACGTAGTCTTGTCATTTGGAT
257 AACTCA-AATGGATCCCCATTTTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGAT
* *** * * * * *
3884007 ACATCATATTGAT-GCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTTTTGTAAAGTCTA
321 ACACCATAAACATAG-CTTGCTTT--CAAGAAAGGCTTTTTCCTCACCAATTTTAGAAAAGCCTA
*
3884071 TGTTCATGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTGATTCATTTTGTGATTAGG
383 TGTTCATGCCTAAAATGAGACAAACATGGA-TCTAGTAATGATCTTGATTCAATTTGTGATTAGG
* *
3884136 TAGTATAAACACA-TTCTCCTCTTTAAGG-TAATTGATATTAATGTTTTTCTTTTGCATGGAAAT
447 CACTATAAACA-ATTTCTCCTCTTT-AGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAAT
*
3884199 CTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCT
510 CTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCT
* *
3884264 CACAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAG
575 CACAACAATCTCCATTCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAG
3884329 ACATTGATGCTTTGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAATTT
640 ACATTGATGCTTTGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAATTT
*
3884394 TTCTCTTAAATATGACAAATGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCA
705 TTCTCTTAAAAATGACAAATGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCA
3884456 CCATAAACAT
Statistics
Matches: 682, Mismatches: 74, Indels: 27
0.87 0.09 0.03
Matches are distributed among these distances:
788 1 0.00
789 106 0.16
790 2 0.00
791 62 0.09
792 333 0.49
793 4 0.01
794 3 0.00
795 3 0.00
796 66 0.10
797 102 0.15
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (791 bp):
TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCCACTTTCCTTTAAATCA
AAGTTCATACCTTAAATAAGACAAACATCGATTCTCAAAACAGTCTCCATTCTTTTCAAGATTGG
GAAGCCAAAACACATTCCCATCATTAGGATACATGACATGATGGTTTGGGGCCAAAAGAAAAGCT
TTTCTTTCACAGACATTTTAGATAGAATCAAAGTTTGCCACTCAAATACGACAAACATGAAAACT
CAAATGGATCCCCATTTTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACACC
ATAAACATAGCTTGCTTTCAAGAAAGGCTTTTTCCTCACCAATTTTAGAAAAGCCTATGTTCATG
CCTAAAATGAGACAAACATGGATCTAGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAA
CAATTTCTCCTCTTTAGGATAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGC
CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCACAACAATCT
CCATTCCTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCT
TTGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAAA
ATGACAAATGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCAGTAGAAAGCATTCT
CCTTATTTGGA
Found at i:3884459 original size:476 final size:476
Alignment explanation
Indices: 3883672--3885852 Score: 2798
Period size: 476 Copynumber: 4.6 Consensus size: 476
3883662 CAGTAGAAAG
* *
3883672 CATTCTCCT-TATTTGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC
1 CATTCTCCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * *
3883736 CCATTTTCCTTTAAATCAAAGTTCATTCCTT-AATAAGACAAACATC-ATT-TCACGTAACAGTC
65 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCA--TAACAGTC
* *
3883798 TCTACTT-TTTTCTTGATTGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACATTGATG
128 TCCA-TTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATG
* * * * *
3883862 TTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGTTTCTCAA
192 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * * *
3883927 ATACGACAAACGTGAAAACTCACACTGATCCCCATTTTTTTCAAGATTGTGCACCATAAACGTAG
257 ATAAGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAG
*
3883992 TCTTGTCATTTGGATACATC-ATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAA
322 TCTTCTCATTTGGATACA-CAATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAA
* * * * *
3884056 TTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTGATT
386 TTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATT
* * *
3884121 CATTTT-GTGATTAGGTAGTATAAACA
451 CATTTTAG-GATTAGGAACTACAAACA
* * *
3884147 CATTCTCCTCTTTAAGG-TAATTGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCC
1 CATTCTCCTCTTT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
*
3884211 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTC
65 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* ** * * *
3884276 CATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTT
130 CATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * *
3884341 TGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAATA
195 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
3884406 TGACAAATGTGAAAACTCAAACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
260 AGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* ** * * * *
3884471 TCTCCTAAGGATTCATC-ATATTGATGCCTTGGTTTCACAAGTAAGGCTTTTTCCTCACCAATTT
325 TCTCATTTGGATACA-CAATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTT
** * * * *
3884535 TTGTAAAGTCTAAGTTTGTACCTCAATTGCGATAAACA-GGGTTCTAGTATTGATCTTCATTCAT
389 TTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCAT
* **
3884599 TTTCGGATTAGGAACTACAAATG
454 TTTAGGATTAGGAACTACAAACA
*
3884622 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTG-AATCTTTTCTTTGCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAAATCTTTTCTTTGCC
* * * * * *
3884686 ATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCGTCGATTCTCGTAATAGTCAC
65 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* *
3884751 CATTATTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACATTGATGCTT
130 CATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * *
3884816 TGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGACAGAATCAAAGTTTATCTTTTAAATA
195 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
3884881 AGACAAACCTGAATACTTATACTAATCCCTATTCTTTTCAAGATTTGGCACCATAAACATAGTCT
260 AGACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* * * * * *
3884946 TCTCATTGGGATACACGATATTGATGCTTTTGTTTCGCAAGAAATGCATTTTTCTCACCAATTTT
325 TCTCATTTGGATACACAATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTTT
* * * * * *
3885011 TGTAAAGTCTAGGTTCATATCTCAAATAAGACAAACATAGGTTTTAGTAATGATCTTTATTCATT
390 TGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATT
* *
3885076 TTAGGGTTAGGAACTACAAACG
455 TTAGGATTAGGAACTACAAACA
* *
3885098 CATTCTCCT-TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC
1 CATTCTCCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* *
3885162 CTATTTTCCTTTAAATCAAAGTTTAGT-CCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCT
65 CTATTTTCCTTTAAATCAAAGTTCA-TACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCT
** *
3885226 CCATTCCTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGTTACATGACATTGATGCT
129 CCATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
3885291 TTGGGGTCGCAAAAAAAGCTTTTCTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
194 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * *
3885356 AAGACAAACAT-AGATACAT-ATAC-GAATCCCCATTTTTTTCAAGATTGGTCACCATAAACATA
259 AAGACAAACGTGA-ATAC-TCATACTG-ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * * * * *
3885418 GTCTTCTCAATTGGATACACAATATTGAAGCTTTGGTTTCGCAAGAAAGACTTTTTTCCCACCAG
321 GTCTTCTCATTTGGATACACAATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAA
** * * * *
3885483 TTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGTGACAAACATGGGTTCTAGTAATAATCTTCATT
386 TTTTTGTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATT
* *
3885548 CATTTT-GTGATTAGGCACTATAAACA
451 CATTTTAG-GATTAGGAACTACAAACA
* * * **
3885574 CATTCTCGTCTTTAGGATGAATGATACTGATGATTTTCTTTTGCATCAAAATCTTTTCTTT-CCC
1 CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
* * * *
3885638 TTATTTTCTTTTAAATCAAAGTTCATACCTTAAATAAGGCGAGCATCGATTCTCATAATAGTCTC
66 -TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
* * * * *
3885703 CATTATTTT-TAAGGTTGGGAAGCTAATACACATTCCCTTCATTAGGATACATGACATTGATGAT
130 CATTATTTTCT-TGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
3885767 TTAGTGTCGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAAT
194 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
*
3885832 ACGACAAACGTGAATACTCAT
259 AAGACAAACGTGAATACTCAT
3885853 TCTGGTTGTC
Statistics
Matches: 1483, Mismatches: 199, Indels: 47
0.86 0.12 0.03
Matches are distributed among these distances:
474 4 0.00
475 496 0.33
476 973 0.66
477 7 0.00
478 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (476 bp):
CATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCC
TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC
ATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACGTGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
CTCATTTGGATACACAATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAATTTTT
GTAAAGTCTAAGTTCATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTT
TAGGATTAGGAACTACAAACA
Found at i:3884853 original size:792 final size:790
Alignment explanation
Indices: 3883249--3884837 Score: 1838
Period size: 792 Copynumber: 2.0 Consensus size: 790
3883239 TTCATGATTG
* * * * *
3883249 GCTTTTTCCTCACCAATTTTAGAAAAGCCTATGTTCATGCCTTAAGTGAGACAAACATGGATCTA
1 GCTTTTTTCTCACCAATTTTTGTAAAGCCTATGTTCATGCCTAAAATGAGACAAACATGGATCTA
3883314 GTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCTTTAGGATAATTGA
66 GTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCTTTAGGATAATTGA
3883379 TATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA
131 TATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA
* * *
3883444 TACCTTAAATAAGATAAGCATCAATTCTTATAACAATCTCCATTCCTTTCAAGGTTGGGAAGCCA
196 TACCTTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCCTTTCAAGGTTGGGAAGCCA
* *
3883509 AAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTT
261 AAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTATCACAAGAAAAGCTATTCTT
* *
3883574 TCCACCGTTTTTGATAGAATCAAAATTTTTCTCTTAAAAATGACAAATGTGAAAACTTAAACTGA
326 TCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAAAATGACAAATGTGAAAACTCAAACTGA
* ** * ** *
3883639 TCCCCATTCTTTTCATGATTGGGCAGTAGAAAGCATTCTCCTTATTTGGATAAATGATATTGATG
391 TCCCCATTCTTTTCAAGATTGGGCACCAGAAAGCATTCTCCTCATAAGGATAAATCATATTGATG
* * ** ** * * * * * *
3883704 ATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCCATTTTCCTTTAAATCAAAGTTCATTCCTTAA
456 ACTTGCTTTCACAAGGAAAGCTTTTCTCTGCCCAATTTT-CTGTAAATCAAAGTTCATACCTCAA
* * *
3883769 TAAGACAAACATCATTTCACGTAACAGTCTCTACTTTTTTCTTGATTGGGAAGCCAAAACACATT
520 TAAGACAAACAGCATTTCACGTAACAGTCTCTACTTTTTTCTGGATTAGGAAGCCAAAACACATT
* * *
3883834 CCCATCATTAGGATACATGACATTGATGTTTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTT
585 CCCATCATTAGGATAAATGACATTGATGTTTTGCTGTCGCAAGAAATGCTTTTCTTTCCACCATT
** ** * * * *
3883899 TTAGATAGAATCAAAGTTTGTTTCTCAAATACGACAAACGTGAAAACTCACACTGATCCCCATTT
650 TTAGATAGAATCAAAGTTCATACCTCAAATAAGACAAACGTGAAAACTCACAATGATCACCATTA
* ** * * * * *
3883964 TTTTCAAGATTGTGCACCATAAACGTAGTCTTGTCATTTGGATACATCATATTGATGCCTTGGTT
715 TTTTCAAGATTGTGAACCATAAACACAGTCCTGTCATTAGGATACATAACATTGATGCCTTGGTG
* *
3884029 TCGCAAGAAAG
780 TCACAAGAAAA
*
3884040 GCTTTTTTCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTAAAATGAGACAAACATGGATTCT
1 GCTTTTTTCTCACCAATTTTTGTAAAGCCTATGTTCATGCCTAAAATGAGACAAACATGGA-TCT
* * *
3884105 AGTAATGATCTTGATTCATTTTGTGATTAGGTAGTATAAACACA-TTCTCCTCTTTAAGG-TAAT
65 AGTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACA-ATTTCTCCTCTTT-AGGATAAT
3884168 TGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
128 TGATATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* * *
3884233 TCATACCTTAAATAAGACAAGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGGTTGGGAAG
193 TCATACCTTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCCTTTCAAGGTTGGGAAG
3884298 CCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTATCACAAGAAAAGCTATT
258 CCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTATCACAAGAAAAGCTATT
*
3884363 CTTTCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAATATGACAAATGTGAAAACTCAAAC
323 CTTTCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAAAATGACAAATGTGAAAACTCAAAC
* * * **
3884428 TGATCCCCATTCTTTTCAAGATTGGGCACCATAAA-CATAGTCTTCTCCTAAGGATTCATCATAT
388 TGATCCCCATTCTTTTCAAGATTGGGCACCAGAAAGCAT--TCTCCTCATAAGGATAAATCATAT
* * * * * **
3884492 TGATGCCTTGGTTTCACAAGTAAGGCTTTT-TCCT-CACCAATTTT-TGTAAAGTCTAAGTTTGT
451 TGATGACTTGCTTTCACAAGGAAAGCTTTTCT-CTGC-CCAATTTTCTGTAAA-TCAAAGTTCAT
** * ** **
3884554 ACCTCAATTGCGATAAACAG-GGTTCTA-GT-ATTGATCT-T-CATTCATTTTC-GGATTAGGAA
513 ACCTCAA-TAAGACAAACAGCATTTC-ACGTAACAG-TCTCTAC-TT--TTTTCTGGATTAGGAA
* ** * * * * *
3884613 -CTACAAATGCATTCTCC-TCATTAGGATAAATGATATTGATGATTTT-CTTTTGCATGTGAAT-
572 GCCA-AAACACATTC-CCATCATTAGGATAAATGACATTGATG-TTTTGCTGTCGCAAG-AAATG
* *** * * * *
3884674 CTTTTCTTTGCCA-TATTTTCCTTTA-AATCAAAGTTCATACCTTAAATAAGACGAGCGTCG-AT
633 CTTTTCTTT-CCACCATTTT-AGATAGAATCAAAGTTCATACCTCAAATAAGACAAACGT-GAAA
* ** ** *
3884736 TCTCGTAAT-AGTCACCATTATTTTCTTGATTAG-GAAGCCA-AAACACATTCCCT-TCATTAGG
695 ACTCACAATGA-TCACCATTATTTTCAAGATT-GTGAA-CCATAAACACAGT-CCTGTCATTAGG
*
3884797 ATACATAACATTGATGCTTTGGTGTCACAAGAAAA
756 ATACATAACATTGATGCCTTGGTGTCACAAGAAAA
3884832 GCTTTT
1 GCTTTT
3884838 CTTTCCATCA
Statistics
Matches: 668, Mismatches: 105, Indels: 49
0.81 0.13 0.06
Matches are distributed among these distances:
790 1 0.00
791 71 0.11
792 514 0.77
793 82 0.12
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (790 bp):
GCTTTTTTCTCACCAATTTTTGTAAAGCCTATGTTCATGCCTAAAATGAGACAAACATGGATCTA
GTAATGATCTTGATTCAATTTGTGATTAGGCACTATAAACAATTTCTCCTCTTTAGGATAATTGA
TATTAATGTTTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA
TACCTTAAATAAGACAAGCATCAATTCTCACAACAATCTCCATTCCTTTCAAGGTTGGGAAGCCA
AAACACATTCCCTTCATTAGGGTACAAGACATTGATGCTTTGGTATCACAAGAAAAGCTATTCTT
TCCACCATTTTTGATAGAATCAAAATTTTTCTCTTAAAAATGACAAATGTGAAAACTCAAACTGA
TCCCCATTCTTTTCAAGATTGGGCACCAGAAAGCATTCTCCTCATAAGGATAAATCATATTGATG
ACTTGCTTTCACAAGGAAAGCTTTTCTCTGCCCAATTTTCTGTAAATCAAAGTTCATACCTCAAT
AAGACAAACAGCATTTCACGTAACAGTCTCTACTTTTTTCTGGATTAGGAAGCCAAAACACATTC
CCATCATTAGGATAAATGACATTGATGTTTTGCTGTCGCAAGAAATGCTTTTCTTTCCACCATTT
TAGATAGAATCAAAGTTCATACCTCAAATAAGACAAACGTGAAAACTCACAATGATCACCATTAT
TTTCAAGATTGTGAACCATAAACACAGTCCTGTCATTAGGATACATAACATTGATGCCTTGGTGT
CACAAGAAAA
Found at i:3885271 original size:951 final size:950
Alignment explanation
Indices: 3883671--3885851 Score: 2926
Period size: 951 Copynumber: 2.3 Consensus size: 950
3883661 GCAGTAGAAA
* * *
3883671 GCATTCTCCTTATTTGGATAAATGATATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC
1 GCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGG-AATCTTTTCTTTGCC
** * * * * *
3883736 CCATTTTCCTTTAAATCAAAGTTCATTCCTT-AATAAGACAAACATC-ATTTCACGTAACAGTCT
65 ATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGA-TTCTCGTAATAGTCT
* * *
3883799 CTACTT-TTTTCTTGATTGGGAAGCCAAAACACATTCCCATCATTAGGATACATGACATTGATGT
129 CCA-TTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGA
* *
3883863 TTTGGTGTCGCAAGAAATGCTTTTCTTTCCACCGTTTTAGATAGAATCAAAGTTTGT-TTCTCAA
193 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTT-TCAA
* * * *
3883927 ATACGACAAACGTGAAAACTCACACTGATCCCCATTTTTTTCAAGATTGTGCACCATAAACGTAG
257 ATACGACAAACGTGAATACTCACACTAATCCCCATTCTTTTCAAGATTGTGCACCATAAACATAG
* * *
3883992 TCTTGTCATTTGGATACATCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTTTTTCTCACCAAT
322 TCTTCTCATTGGGATACATCATATTGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCTCACCAAT
* * *
3884057 TTTTGTAAAGTCTATGTTCATGCCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTGATTC
387 TTTTGTAAAGTCTAGGTTCATACCTAAAATAAGACAAACATGGATTCTAGTAATGATCTTGATTC
* * * * *
3884122 ATTTTGTGATTAGGTAGTATAAACACATTCTCCTCTTTAAGGTAATTGATATTAATGTTTTTCTT
452 ATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAAGGTAAATGATATTAATGATTTTCTT
* *
3884187 TTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
517 TTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
* *
3884252 AGCATCGATTCTCACAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCCAAAACACATTCCCTTCA
582 AGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* *
3884317 TTAGGGTACAAGACATTGATGCTTTGGTATCACAAGAAAAGCTATTCTTTCCACCATTTTTGATA
647 TTAGGGTACAAGACATTGATGCTTTGGGATCACAAAAAAAGCTATTCTTTCCACCATTTTTGATA
* * **
3884382 GAATCAAAATTTTTCTCTTAAATATGACAAATGT-GAAA-ACTCAAACTG-ATCCCCATTCTTTT
712 GAATCAAAATTTGTCTCTTAAATAAGACAAACATAGAAACA-T-AAAC-GAATCCCCATTCTTTT
* *
3884444 CAAGATTGGGCACCATAAACATAGTCTTCTCCTAA-GGATTCATC-ATATTGATGCCTTGGTTTC
774 CAAGATTGGGCACCATAAACATAGTCTTCT-C-AATGGATACA-CAATATTGAAGCCTTGGTTTC
* * * * *
3884507 ACAAGTAAGGC-TTTTTCCTCACCAATTTTTGTAAAGTCTAAGTTTGTACCTCAATTGCGATAAA
836 ACAAGAAAGACTTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGCGACAAA
* * *
3884571 CA-GGGTTCTAGTATTGATCTTCATTCATTTTCG-GATTAGGAACTACAAAT
900 CATGGGTTCTAGTAATAATCTTCATTCATTTT-GTGATTAGGAACTACAAAC
3884621 GCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGTGAATCTTTTCTTTGCC
1 GCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATG-GAATCTTTTCTTTGCC
* *
3884686 ATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCGTCGATTCTCGTAATAGTCAC
65 ATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCGTAATAGTCTC
* * *
3884751 CATTATTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACATAACATTGATGCTT
130 CATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGATT
* * * * * *
3884816 TGGTGTCACAAGAAAAGCTTTTCTTTCCATCATTTTTGACAGAATCAAAGTTTATCTTTTAAATA
195 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTTTCAAATA
* * * * *
3884881 AGACAAACCTGAATACTTATACTAATCCCTATTCTTTTCAAGATT-TGGCACCATAAACATAGTC
260 CGACAAACGTGAATACTCACACTAATCCCCATTCTTTTCAAGATTGT-GCACCATAAACATAGTC
* * *
3884945 TTCTCATTGGGATACA-CGATATTGATGCTTTTGTTTCGCAAGAAATGCATTTTTCTCACCAATT
324 TTCTCATTGGGATACATC-ATATTGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCTCACCAATT
* * * *
3885009 TTTGTAAAGTCTAGGTTCATATCTCAAATAAGACAAACATAGG-TTTTAGTAATGATCTTTATTC
388 TTTGTAAAGTCTAGGTTCATACCTAAAATAAGACAAACAT-GGATTCTAGTAATGATCTTGATTC
* * *
3885073 ATTTTAG-GGTTAGGAACTACAAACGCATTCTCCT-TATT-AGGATAAATGATATTGATGATTTT
452 ATTTT-GTGATTAGGAACTACAAACACATTCTCCTCT-TTAAGG-TAAATGATATTAATGATTTT
*
3885135 CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTTAGT-CCTTAAATAA
514 CTTTTGCATGAAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCA-TACCTTAAATAA
** **
3885199 GACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTCTTGATTGGGAAGCCAAAACACATTCCC
578 GACAAGCATCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * * * *
3885264 TTCATTAGGTTACATGACATTGATGCTTTGGGGTCGCAAAAAAAGCTTTTCTTTTCACCGTTTTT
643 TTCATTAGGGTACAAGACATTGATGCTTTGGGATCACAAAAAAAGCTATTCTTTCCACCATTTTT
* * * *
3885329 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATAGATACATATACGAATCCCCATTTTTT
708 GATAGAATCAAAATTTGTCTCTTAAATAAGACAAACATAGAAACATAAACGAATCCCCATTCTTT
* * *
3885394 TCAAGATTGGTCACCATAAACATAGTCTTCTCAATTGGATACACAATATTGAAGCTTTGGTTTCG
773 TCAAGATTGGGCACCATAAACATAGTCTTCTCAA-TGGATACACAATATTGAAGCCTTGGTTTCA
* ** * *
3885459 CAAGAAAGACTTTTTTCCCACCAGTTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGTGACAAACA
837 CAAGAAAGACTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGCGACAAACA
* *
3885524 TGGGTTCTAGTAATAATCTTCATTCATTTTGTGATTAGGCACTATAAAC
902 TGGGTTCTAGTAATAATCTTCATTCATTTTGTGATTAGGAACTACAAAC
* * * * * ** *
3885573 ACATTCTCGTCTTTAGGATGAATGATACTGATGATTTTCTTTTGCATCAAAATCTTTTCTTTCCC
1 GCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAT-GGAATCTTTTCTTTGCC
* * * *
3885638 TTATTTTCTTTTAAATCAAAGTTCATACCTTAAATAAGGCGAGCATCGATTCTCATAATAGTCTC
65 ATATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCGTAATAGTCTC
* * * *
3885703 CATTATTTT-TAAGGTTGGGAAGCTAATACACATTCCCTTCATTAGGATACATGACATTGATGAT
130 CATTATTTTCT-TGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGAT
* * *
3885767 TTAGTGTCGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTCAAAT
194 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTTTCAAAT
3885832 ACGACAAACGTGAATACTCA
259 ACGACAAACGTGAATACTCA
3885852 TTCTGGTTGT
Statistics
Matches: 1074, Mismatches: 134, Indels: 44
0.86 0.11 0.04
Matches are distributed among these distances:
949 2 0.00
950 99 0.09
951 670 0.62
952 302 0.28
953 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (950 bp):
GCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAATCTTTTCTTTGCCA
TATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACGAGCATCGATTCTCGTAATAGTCTCC
ATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGATTT
GGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTTTCAAATAC
GACAAACGTGAATACTCACACTAATCCCCATTCTTTTCAAGATTGTGCACCATAAACATAGTCTT
CTCATTGGGATACATCATATTGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCTCACCAATTTTT
GTAAAGTCTAGGTTCATACCTAAAATAAGACAAACATGGATTCTAGTAATGATCTTGATTCATTT
TGTGATTAGGAACTACAAACACATTCTCCTCTTTAAGGTAAATGATATTAATGATTTTCTTTTGC
ATGAAAATCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
TCGATTCTCACAACAGTCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAG
GGTACAAGACATTGATGCTTTGGGATCACAAAAAAAGCTATTCTTTCCACCATTTTTGATAGAAT
CAAAATTTGTCTCTTAAATAAGACAAACATAGAAACATAAACGAATCCCCATTCTTTTCAAGATT
GGGCACCATAAACATAGTCTTCTCAATGGATACACAATATTGAAGCCTTGGTTTCACAAGAAAGA
CTTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGCGACAAACATGGGTTCTA
GTAATAATCTTCATTCATTTTGTGATTAGGAACTACAAAC
Found at i:3891931 original size:476 final size:475
Alignment explanation
Indices: 3890943--3895164 Score: 5153
Period size: 476 Copynumber: 8.9 Consensus size: 475
3890933 GTTGTCATCA
* *
3890943 ATAAACATAGTCTTCT-CATTAGGATATATCATATTGATGCTTT-GTCTTCGCAAGAAAGGCTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGT-TTCGCAAGAAAGGCTTT
* * * *
3891006 TCTCCCACCAAGTTTTGCAAAGTC-AAGTTCATGGCTCAAATGAGACAAACATGGATTCTACTAA
65 T-TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAA
* *
3891070 TGATCTTCATTCATTGTGTGATTAGGCACTACAAACACATTCTCCCATTAGGATAAATGATATTG
129 TGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCCTTTAGGATAAATGATATTG
* * *
3891135 ATGATTTTCTTTTCCATGAAAATCTTTTATTTGCCCTATTTTCC-TTAAATTCAAAGTTCAT-CA
194 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATAC-
* * * **
3891198 CTTAAATAAGACAAGCCTCTATTCTCGT---A----CCATTATTTTCAAGATTAGGAAGGTAAAA
257 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAA
* * * * *
3891256 CACATTCCTTTCATTAGGATATATGACATTCATGCTTTGCTGTCGCAGGAAAAGCTTTTCTTTCC
322 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * *
3891321 ACCGTTTTTTGATAGAATAAAAGTTTGTCTCTTAAATACGACAAACATGAAAACTCATACTAATC
387 ACCG-TTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATC
3891386 CCCATTCTTTTCAAGATTGGGCACC
451 CCCATTCTTTTCAAGATTGGGCACC
* * * * * * * *
3891411 ACAAACATATTCTTCTCC-TTAAGATAGATGATATTGAAGCTTTGGTATCGCAAGAAAGGTTTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGG-CTTT
** * *
3891475 TTCCCAATAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAATATGGATTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * *
3891540 GATCTTTATTCATTTTATGATTAGGTACTATAAACACATTCTCTCCTTTAGGATAAATAATATTA
130 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTC-CCTTTAGGATAAATGATATTG
* * *
3891605 ATGATTTTCTTTTGCATTGAAATCTTCTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCACACCT
194 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCT
* * * *
3891670 TAAACAAGAGAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCTAGATTAGGAAGCCAAAACA
259 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACA
* * * *
3891735 AATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCCTTTCTTTTCAC
324 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC
* * ** *
3891800 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGATAAACGTGAATACTCATACCGCGCCCT
389 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCCCC
*
3891865 ATTCTTTTCAAGATTGGACACC
454 ATTCTTTTCAAGATTGGGCACC
* * *
3891887 ATAAACATAGTCTTCTCCTTTA-GACACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
3891951 TCCCGACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
66 TCCC-ACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
*
3892016 GATCTTCATTCATTTTTGTGATTAGGCACTACAAACACATTCTCCTCTTTAGGATAAAAGATATT
130 GATCTTCATTCA-TTTTGTGATTAGGCACTACAAACACATTCTCC-CTTTAGGATAAATGATATT
* *
3892081 GGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAATGTTCATACC
193 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * *
3892146 TAAAATAAGACTAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAAGATTACGAAGCCAAAAC
258 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAAC
* * * *
3892211 ACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGGGTCGTAAAAAAAGCTTTTCTTTCCA
323 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * *
3892276 CCGTTTTTGACAGAATCAAAGTTTATCTCTTAAATATGACAAACGTGAATACTCATACTGA-CAC
388 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATC-C
3892340 CCATTCTTTTCAAGATTGGGCACC
452 CCATTCTTTTCAAGATTGGGCACC
* * *
3892364 ATAAACATAGTCTTCTCC-TAAGGATACATCATATTGATGCCTTGGATTCGCAAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* * * * *
3892428 TCCTCACGAATTTTTGTAAAGTCTATGTTCATGTCTCAAATTAGACAAACATGGATTCCAGTAAT
66 TCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * * * *
3892493 CATTTTTATTCATTTTATGATTAGGCACTATAAACACATTCTCCACTTTAGGATAAATGATACTA
130 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCC-CTTTAGGATAAATGATATTG
* * *
3892558 ATGATTTT-TTTT-AATGGAACTCTTTTCTTTACCCTATTTTCCTTTAAATCAAAGTTCATACCT
194 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCT
* * * * **
3892621 TAAATAGGACAAGCATTGATTCTCGTAATAGTTTCCATTCTTTTCTTGATTAGGAAGCCAAAACA
259 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACA
* * * * *
3892686 CATTCCCTTCATTAGGATACAAGACATTGTTGCTTTGGTGTCACAAGGAAAGCTTTTC-CTCCAA
324 CATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-A
** * * * * *
3892750 TTGTTTTTGACAGAATCAAAGTTTATCTCTTAAATACGAAAAATGTGAATACTCTTACTGATCCC
388 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCCC
* *
3892815 CGTTCTTCTCAAGATTGGGCACC
453 CATTCTTTTCAAGATTGGGCACC
* * * * *
3892838 ATAAACGTAGTCTTCT--TGTAAGGATACGTCATATTGACGCCTTGGTTTCGCAAGAAAGGCTTT
1 ATAAACATAGTCTTCTCCT-TTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * * *
3892901 TTCCTCACCAATTTTTGTAACGTCTATGTTTATGTCTCAAATTAGACAAACATGGATTCTGGTAA
65 TTCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAA
* * * * * * * *
3892966 TGATCTTTATTCATTTTGTGATTAGGCACTATAAGCACCTTCTCTTCTTTAAGATAAATGACACT
129 TGATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTC-CCTTTAGGATAAATGATATT
* *
3893031 AATGATTTTCTTTTGCATGGAAATATTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
193 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * *
3893096 TTAAATAAGATAAGTATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAAC
258 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAAC
* * * * * * ** *
3893161 ACATTCCATTCGTTAGGATACCTGGCATTAATGCTTTGGGGTCATAAGAAAAGCTTTTCTTTTCA
323 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * *
3893226 TCGTTTTTTATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTGAATACTCATACTGATCCC
388 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCCC
*
3893291 TATTCTTTTCAAGATTGGGCACC
453 CATTCTTTTCAAGATTGGGCACC
* * * * * *
3893314 ATAAACATTGTCTTCTCATTT-GGATACGTGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTT
* ** * *
3893378 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTATCTCAAATGAGACAAACATGGGTTCTTGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
3893443 AATCTTCATTCATTTTGGGATAAGGAACTACAAACACATTCT-CCTAGTTAGGATAAATGATACT
130 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCCT--TTAGGATAAATGATATT
* * *
3893507 GATGATTTTTTTTTGCATGAAAATATTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
193 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * *
3893572 TTAACTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAAGGTTGGGAAGCCAAAAC
258 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAAC
* * ** *
3893637 ACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCACTGGAAAAGCTTTTCTTTTCA
323 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
** * * *
3893702 CCGTTTTTGATAGAATCAAAGTTTGTCAATTAAATACGAAAAATGTGAATACTCATAGTGATCCC
388 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCCC
* *
3893767 CATTATTTTCTAGATTGGGCACC
453 CATTCTTTTCAAGATTGGGCACC
* * * * * * * *
3893790 ATAAATATAATCTTC-CCTTTTGGATACATGATATTGAAGCTTTAGTTTCACAAGAAATGCATTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTT
* ** * *
3893854 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTATCTCAAGTGAGACAAACATGGGTTCTAGTAAT
65 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * * *
3893919 GATTTTCATTCATTTTGGGATT-GTGAACTACAAACACATTCTCCTCATGAGGATAAATGATATT
130 GATCTTCATTCATTTTGTGATTAG-GCACTACAAACACATTCTCC-CTTTAGGATAAATGATATT
* * * * *
3893983 GACGATTTTCTTTT-AATGAAAATCTTTTCTTTGCGCTATTTTCGTTTAAATCAAAGTTCATACC
193 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
3894047 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCAAGATTGGGAAGCCAATAC
258 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAAC
* * * ** *
3894112 ACATTCCCTTCATTAGGATACTTGGCATTGATGCTTTAGG-GCCAAAAAAAAAGCTTTTCTTTCC
323 ACATTCCCTTCATTAGGATACATGACATTGATGCTTT-GGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * ** * * *
3894176 ACCGTTTTTAATAGAATCGAAGTTTGCCTCTTAAATAAGACAAAAATGAATACTCGTGCTAATCC
387 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCC
* *** * *
3894241 CCAATCTTTTTGGGATTAGGCACA
452 CCATTCTTTTCAAGATTGGGCACC
* * *
3894265 ATAAACATAGTCTTCTCC-TTAGGATAAATCATATTGATGCTTTGGTTTCACAAGAAATGCTTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TTT
* ** * * * **
3894329 TTCCCACCAATTTTTGTAATGTCTAAGTTTGTTCCTCAAATGAGACAAATATGGGTTCTAGTGTT
65 TTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * * ** * * *
3894394 GATCTTCAATCATTTTGGGATTAGGAAAAACAAACACATTCAACTCATTAGGATAAATGATATTG
130 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTC-TCCCTTTAGGATAAATGATATTG
* * *
3894459 ATGATTTTCTCTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATTAGAGTTCATACCT
194 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCT
* * * * * * * *
3894524 TAAATAAGACAAGCATTGATTCTTGTAACAATTTCAATTTTTTTTTACA-ATTGGGAAGCCAAAA
259 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA-TTCTTTTCA-AGATTAGGAAGCCAAAA
* * * *
3894588 CACATGCCCTTTATTAGGATACAAGACACT-AGTGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
322 CACATTCCCTTCATTAGGATACATGACATTGA-TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
3894652 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGATAAACATGAATACTTATACTGATC
386 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATC
* *
3894717 CCCAATCTTTTCAAGATTGGGCTCC
451 CCCATTCTTTTCAAGATTGGGCACC
* * * * * * *
3894742 GTAAACATAGTCTTCTTC-TAAGGATTCATCATATTAATGCCTTGGTTTCACAAGAAAGGCTTTT
1 ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* * *
3894806 TCCTCACCAATTTTTGTAAAGTTTATGTTCATGCCTCAAATAAGACAAACATGGATTCTAGTAAT
66 TCC-CACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAT
* * *
3894871 CATCTTCATTCATTTTGTGATTAGGCACTATAAACAAATT-TCCTCTTTAGGATAAATGATACTT
130 GATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCC-CTTTAGGATAAATGATA-TT
* * * *
3894935 -ATGATTTTCTTTTGCATGGGAATCATTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATATC
193 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * * * ** *
3894999 TCAAATAACACAAGCATCGATTCTCGTATCAGTTTCCATTCTTTCCTCGATTAGGAAGCTAAAAC
258 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAAC
** * *
3895064 ACATTCCCTTCATTAGGATACATGGTATTGATGCTTTGGTGTAGCAAGAAAAGCTTTTTTTTCCA
323 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* *
3895129 CCGTTTTTTATAGAATCAAAGTTTGTGTCTTAAATA
388 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
3895165 AAACAAACAG
Statistics
Matches: 3253, Mismatches: 449, Indels: 97
0.86 0.12 0.03
Matches are distributed among these distances:
468 65 0.02
469 82 0.03
470 91 0.03
471 6 0.00
473 4 0.00
474 416 0.13
475 533 0.16
476 1255 0.39
477 797 0.25
478 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
ATAAACATAGTCTTCTCCTTTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
TCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATG
ATCTTCATTCATTTTGTGATTAGGCACTACAAACACATTCTCCCTTTAGGATAAATGATATTGAT
GATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTA
AATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACA
TTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
TTTTTGATAGAATCAAAGTTTGTCTCTTAAATACGACAAACGTGAATACTCATACTGATCCCCAT
TCTTTTCAAGATTGGGCACC
Found at i:3893719 original size:159 final size:156
Alignment explanation
Indices: 3891651--3894199 Score: 466
Period size: 159 Copynumber: 16.1 Consensus size: 156
3891641 TATTTTCCTT
* * * *
3891651 TAAATCAAAGTTCACACCTTAAACAAGAGAAGCATCGATTCTCGTAA-AAGTCTCCATTCTTTTC
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAA-TCTCCATTCTTTTC
* * * * *
3891715 TAGATTAGGAAGCCAAAACAAATTCCCTTCATTAGAATACATGACATTGATGCTTTGGTGTCGCA
65 AAGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGT--CA
*
3891780 -AGAAAAGCCTTTCTTTTCACCGTTTTTGA
127 TAGAAAAGCTTTTCTTTTCACCGTTTTTGA
** * * * * * * ***
3891809 TAGAATCAAAGTTTGT-CTCTTAAATACGATAAACGT-GAATACTCATACCGCGC-CCTATTCTT
1 TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAACAATCTCC-ATTCTT
* * * * * * * * *
3891871 TTCAAGATT-GGACACCATAAACATAGTCTTCTCCTTTA-GACACATGATATTGATGCTTTGGTT
62 TTCAAGATTGGGA-ACCA-AAACACATTC-CCTTCATTAGGATACAAGACATTGATGCTTTGGTG
** *
3891934 TCGCA-AGAAAAGC-TTT-TTCCCGACCAATTTTTG-
124 T--CATAGAAAAGCTTTTCTTTTC-ACC-GTTTTTGA
* * * * * * ** *
3891967 TAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTT
1 TAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTC-TTTT
*** * * * * * * * * ** *
3892032 TGTGATTAGGCACTACAAACACATTCTCC-TCTTTAGGATAAAAGATATTGGTGATTTTCTTTTG
64 CAAGATTGGGAACCA-AAACACATTC-CCTTCATTAGGATACAAGACATTGATG-CTTTGGTGT-
* * * **
3892096 CAT-GGAAATCTTTTCTTTGC-CC-TATTTTCCTT
125 CATAGAAAAGCTTTTCTTTTCACCGT-TTTT--GA
* * * * * *
3892128 TAAATCAATGTTCATACCTAAAATAAGACTAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCA
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
** * * *
3892193 AGATTACGAAGCCAAAACACATTCCCTTCATTAGGATACACGACATTGATGCTTTGGGGTCGTAA
66 AGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCAT-A
* *
3892258 AAAAAGCTTTTCTTTCCACCGTTTTTGA
129 GAAAAGCTTTTCTTTTCACCGTTTTTGA
* * * * * *
3892286 CAGAATCAAAGTTTAT-CTCTTAAATATGACAAACGT-GAATACTCAT-ACTGACA-C-CCATTC
1 TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAAC--A-ATCTCCATTC
* * * * * * ** * *
3892346 TTTTCAAGATTGGGCACCATAAACATAGT-CTTCTCCTAAGGATACATCATATTGATGCCTTGGA
60 TTTTCAAGATTGGGAACCA-AAACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGG-
* **
3892410 T-TCGCA-AGAAAGGCTTTT-TCCTCA-CGAATTTTTG-
122 TGT--CATAGAAAAGCTTTTCTTTTCACCG--TTTTTGA
* * ** * * * * **
3892444 TAAAGTCTATGTTCATGTCTCAAATTAGACAAACATGGATTC-CAGTAATC-ATTTTTATTCATT
1 TAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTC-GTAA-CAATCTCCATTC-TT
* * * * * * * * * * ** *
3892507 TT-ATGATTAGGCACTATAAACACATTCTCC-ACTTTAGGATA-AATGATACTAATGATTTTTTT
62 TTCAAGATTGGGAACCA-AAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTG
* * ** * **
3892569 TAAT-GGAACTCTTTTC-TTT-ACCCTATTTTCCTT
124 TCATAGAAAAGCTTTTCTTTTCACCGT-TTTT--GA
* * * * * * *
3892602 TAAATCAAAGTTCATACCTTAAATAGGACAAGCATTGATTCTCGTAATAGTTTCCATTCTTTTCT
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * *
3892667 TGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGTTGCTTTGGTGTCACAA
66 AGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCA-TA
* * * **
3892732 GGAAAGCTTTTC-CTCCAATTGTTTTTGA
129 GAAAAGCTTTTCTTTTC-ACCGTTTTTGA
* * * * * * * * *
3892760 CAGAATCAAAGTTTAT-CTCTTAAATACGA-AAA-ATGTGAATACTC-TTACTGATCCCCGTTCT
1 TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACAT-CG-ATTCTCGTAAC-AATCTCCATTCT
* * ** * * *** * * *
3892821 TCTCAAGATTGGGCACCATAAACGTAGT--CTTCTTGTAAGGATACGTCATATTGACGCCTTGGT
61 TTTCAAGATTGGGAACCA-AAACACATTCCCTTCAT-T-AGGATACAAGACATTGATGCTTTGGT
* * ** *
3892884 TTCGCA-AGAAAGGCTTTT-TCCTCACCAATTTTTG-
123 GT--CATAGAAAAGCTTTTCTTTTCACC-GTTTTTGA
* * * * ** * * * * ** **
3892918 TAACGTCTATGTTTATGTCTCAAATTAGACAAACATGGATTCTGGTAATGATCTTTATTCATTTT
1 TAA-ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTC-TTTT
** * * * * * * * * * * * ** *
3892983 -GTGATTAGGCACTATAAGCACCTTCTCTTCTTTAAGATA-AATGACACTAATGATTTTCTTTTG
64 CAAGATTGGGAACCA-AAACACATTCCCTTCATTAGGATACAA-GACATTGATG-CTTTGGTGT-
* * **
3893046 CATGGAAATA--TTTTCTTTGC-CC-TATTTTCCTT
125 CATAGAAA-AGCTTTTCTTTTCACCGT-TTTT--GA
* ** *
3893078 TAAATCAAAGTTCATACCTTAAATAAGATAAGTATCGATTCTCGTAACAGTCTCCATTCTTTTCA
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
* * * ** * * *
3893143 AAATTGGGAAGCCAAAACACATTCCATTCGTTAGGATACCTGGCATTAATGCTTTGGGGTCATAA
66 AGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCAT-A
* *
3893208 GAAAAGCTTTTCTTTTCATCGTTTTTTA
129 GAAAAGCTTTTCTTTTCACCGTTTTTGA
* * * * *
3893236 TAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACCT-GAATACTCAT-ACTGATC-CCTATTCT
1 TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAAC-AATCTCC-ATTCT
* * * * * ** * * *
3893297 TTTCAAGATTGGGCACCATAA-ACATTGTCTTCTCATTTGGATACGTGATATTGAAGCTTTGGTT
61 TTTCAAGATTGGGAACCAAAACACATT-CCCT-TCATTAGGATACAAGACATTGATGCTTTGGTG
* * ** *
3893361 TCGCA-AGAAATGCATTT-TTCCCACCAATTTTTG-
124 T--CATAGAAAAGCTTTTCTTTTCACC-GTTTTTGA
* * * * * * * * * *
3893394 TAAAGTCTAAGTTCGTATCTCAAATGAGACAAACATGGGTTCTTGTAATAATCTTCATTCATTTT
1 TAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTC-TTTT
** ** * * * * ** *
3893459 -GGGATAAGGAACTACAAACACATTCTCC-T-AGTTAGGATA-AATGATACTGATGATTTTTTTT
64 CAAGATTGGGAACCA-AAACACATTC-CCTTCA-TTAGGATACAA-GACATTGATG-CTTTGGTG
** * **
3893520 TGCAT-GAAAATATTTTCTTTGC-CC-TATTTTCCTT
124 T-CATAGAAAAGCTTTTCTTTTCACCGT-TTTT--GA
* *
3893554 TAAATCAAAGTTCATACCTTAACTAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCA
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
* *
3893619 AGGTTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCACTG
66 AGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCA-TA
3893684 GAAAAGCTTTTCTTTTCACCGTTTTTGA
129 GAAAAGCTTTTCTTTTCACCGTTTTTGA
** * * * * * *** * *
3893712 TAGAATCAAAGTTTGT-CAATTAAATACGA-AAA-ATGTGAATACTCATAGTGATCCCCATTATT
1 TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACAT-CG-ATTCTCGTAACAATCTCCATTCTT
* * * * * * * *
3893774 TTCTAGATTGGGCACCATAAATATAATCTTCCCTT--TT-GGATACATGATATTGAAGCTTTAGT
62 TTCAAGATTGGGAACCA-AAACA-CA--TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGT
* * * * ** *
3893836 TTCACAAGAAATGCATTT-TTCCCACCAATTTTTG-
123 GTCA-TAGAAAAGCTTTTCTTTTCACC-GTTTTTGA
* * * * * * * * * ** * *
3893870 TAAAGTCTAAGTTCGTATCTCAAGTGAGACAAACATGGGTTCTAGTAATGATTTTCATTCATTTT
1 TAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTC-TTTT
** * * * * * * ** * *
3893935 -GGGATTGTGAACTACAAACACATTCTCC-TCATGAGGATA-AATGATATTGACGATTTTCTTTT
64 CAAGATTGGGAACCA-AAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTC
* * * ** * *
3893997 A-ATGAAAATCTTTTCTTTGCGCTATTTTCGTT
126 ATA-GAAAAGCTTTTCTTTTCACCGTTTTTG-A
* * *
3894029 TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAATCTTTTCA
1 TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
* ** * * *
3894094 AGATTGGGAAGCCAATACACATTCCCTTCATTAGGATACTTGGCATTGATGCTTTAGG-GCCAAA
66 AGATTGGGAA-CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTT-GGTGTC-AT
* * *
3894158 AAAAAAGCTTTTCTTTCCACCGTTTTTAA
128 AGAAAAGCTTTTCTTTTCACCGTTTTTGA
*
3894187 TAGAATCGAAGTT
1 TA-AATCAAAGTT
3894200 TGCCTCTTAA
Statistics
Matches: 1667, Mismatches: 545, Indels: 357
0.65 0.21 0.14
Matches are distributed among these distances:
154 1 0.00
155 9 0.01
156 23 0.01
157 151 0.09
158 511 0.31
159 829 0.50
160 119 0.07
161 17 0.01
162 7 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (156 bp):
TAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCCATTCTTTTCA
AGATTGGGAACCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCATAGA
AAAGCTTTTCTTTTCACCGTTTTTGA
Found at i:3896196 original size:13 final size:13
Alignment explanation
Indices: 3896178--3896234 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
3896168 CATAAAGTGT
3896178 TGTATCGATACAA
1 TGTATCGATACAA
3896191 TGTATCGATACATAA
1 TGTATCGATAC--AA
3896206 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
3896223 TGTATCGATACA
1 TGTATCGATACA
3896235 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3896213 original size:32 final size:32
Alignment explanation
Indices: 3896158--3896258 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
3896148 TTCAACGATT
3896158 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACAT-AAGTGTTGTATCGATACAA
3896191 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
3896223 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
3896255 TGTA
1 TGTA
3896259 AGCTACTACC
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 54 0.81
33 13 0.19
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:3896215 original size:19 final size:18
Alignment explanation
Indices: 3896156--3896253 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
3896146 ATTTCAACGA
3896156 TTTGTATCGATACATAAAG
1 TTTGTATCGATACAT-AAG
3896175 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
3896191 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
3896207 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
3896223 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
3896239 TTTTGTATCGATACA
1 -TTTGTATCGATACA
3896254 ATGTAAGCTA
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
15 4 0.06
17 4 0.06
19 24 0.36
20 12 0.18
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:3896315 original size:13 final size:13
Alignment explanation
Indices: 3896297--3896321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3896287 ATTACTCAAA
3896297 TGTATCGATACAT
1 TGTATCGATACAT
3896310 TGTATCGATACA
1 TGTATCGATACA
3896322 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3897536 original size:29 final size:29
Alignment explanation
Indices: 3897504--3897585 Score: 68
Period size: 29 Copynumber: 3.0 Consensus size: 29
3897494 TCATGATTAA
3897504 ATCAAGTCCAAAACTCTAATCTTTGAACC
1 ATCAAGTCCAAAACTCTAATCTTTGAACC
* *** **
3897533 ATCAGGTCTGGAA-TC--ATGATT-AA--
1 ATCAAGTCCAAAACTCTAATCTTTGAACC
3897556 ATCAAGTCCAAAACTCTAATCTTTGAACC
1 ATCAAGTCCAAAACTCTAATCTTTGAACC
3897585 A
1 A
3897586 AAATGGCCTT
Statistics
Matches: 35, Mismatches: 12, Indels: 12
0.59 0.20 0.20
Matches are distributed among these distances:
23 9 0.26
24 2 0.06
25 2 0.06
26 8 0.23
27 2 0.06
28 2 0.06
29 10 0.29
ACGTcount: A:0.38, C:0.23, G:0.11, T:0.28
Consensus pattern (29 bp):
ATCAAGTCCAAAACTCTAATCTTTGAACC
Found at i:3897560 original size:52 final size:52
Alignment explanation
Indices: 3897482--3897585 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
3897472 ATTTAGTTTT
3897482 TCAGGTCTGGAATCATGATTAAATCAAGTCCAAAACTCTAATCTTTGAACCA
1 TCAGGTCTGGAATCATGATTAAATCAAGTCCAAAACTCTAATCTTTGAACCA
3897534 TCAGGTCTGGAATCATGATTAAATCAAGTCCAAAACTCTAATCTTTGAACCA
1 TCAGGTCTGGAATCATGATTAAATCAAGTCCAAAACTCTAATCTTTGAACCA
3897586 AAATGGCCTT
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.37, C:0.21, G:0.13, T:0.29
Consensus pattern (52 bp):
TCAGGTCTGGAATCATGATTAAATCAAGTCCAAAACTCTAATCTTTGAACCA
Found at i:3902069 original size:51 final size:52
Alignment explanation
Indices: 3901959--3902086 Score: 240
Period size: 51 Copynumber: 2.5 Consensus size: 52
3901949 CGAAATATGA
*
3901959 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
3902011 AAATTTGCCTGCATGTATCGATACATTT-ATAGAGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
3902062 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
3902087 ATGTATCGAT
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
51 47 0.63
52 28 0.37
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
Found at i:3902092 original size:13 final size:13
Alignment explanation
Indices: 3902074--3902099 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3902064 ATTTGCCTGC
3902074 ATGTATCGATACA
1 ATGTATCGATACA
3902087 ATGTATCGATACA
1 ATGTATCGATACA
3902100 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3902178 original size:32 final size:33
Alignment explanation
Indices: 3902137--3902205 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
3902127 GGCAGTAGCT
3902137 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
3902169 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
3902202 TACA
1 TACA
3902206 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:3902179 original size:13 final size:13
Alignment explanation
Indices: 3902161--3902185 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3902151 ACAAAACTTA
3902161 TGTATCGATACAT
1 TGTATCGATACAT
3902174 TGTATCGATACA
1 TGTATCGATACA
3902186 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3903182 original size:58 final size:58
Alignment explanation
Indices: 3903112--3903362 Score: 312
Period size: 58 Copynumber: 4.3 Consensus size: 58
3903102 AGAGGACACG
* * *
3903112 GACTTGTCGGCTTTTGAAGGTTGCCACTGATTTATGGGCTTT-GAAAAAGGGTGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAA-GGTGCCACT
* *
3903170 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTTGGCTTTGGGAAAAAGGTACCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTT-GGAAAAAGGTGCCACT
* * * * *
3903229 GATTTGTGGAC-TTTGAAGGTTGCCATTGACTTGTGGGCTTTGGGAGAAGGGTGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTT-GGAAAAAGGTGCCACT
* * *
3903287 GATTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTT-GACAAAGATGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGTGCCACT
* *
3903343 AACTTGTGGGCTTTTAAAGG
1 GACTTGTGGGCTTTTGAAGG
3903363 GTGAGGAATA
Statistics
Matches: 170, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
56 21 0.12
57 7 0.04
58 119 0.70
59 17 0.10
60 6 0.04
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (58 bp):
GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGTGCCACT
Found at i:3903263 original size:27 final size:27
Alignment explanation
Indices: 3903112--3903356 Score: 213
Period size: 27 Copynumber: 8.5 Consensus size: 27
3903102 AGAGGACACG
*
3903112 GACTTGTCGGCTTTTGAAGGTTGCCACT
1 GACTTGTGGGC-TTTGAAGGTTGCCACT
* * *
3903140 GATTTATGGGCTTTGAAAAAGGGTGCCACT
1 GACTTGTGGGCTTTG---AAGGTTGCCACT
3903170 GACTTGTGGGCTTTTGAAGGTTGCCACT
1 GACTTGTGGGC-TTTGAAGGTTGCCACT
* *
3903198 GACTTGTTGGCTTTGGGAAAAAGG-TACCACT
1 GACTTGTGGGCTTT--G---AAGGTTGCCACT
* * *
3903229 GATTTGTGGACTTTGAAGGTTGCCATT
1 GACTTGTGGGCTTTGAAGGTTGCCACT
*
3903256 GACTTGTGGGCTTTGGGAGAAGGGTGCCACT
1 GACTTGTGGGCTTT----GAAGGTTGCCACT
*
3903287 GATTTGTGGGCTTTGAAGGTTGCCACT
1 GACTTGTGGGCTTTGAAGGTTGCCACT
* *
3903314 GACTTGTGGGCTTTGACAAAGATGCCACT
1 GACTTGTGGGCTTTG--AAGGTTGCCACT
*
3903343 AACTTGTGGGCTTT
1 GACTTGTGGGCTTT
3903357 TAAAGGGTGA
Statistics
Matches: 177, Mismatches: 24, Indels: 31
0.76 0.10 0.13
Matches are distributed among these distances:
26 4 0.02
27 50 0.28
28 29 0.16
29 25 0.14
30 20 0.11
31 45 0.25
32 4 0.02
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.33
Consensus pattern (27 bp):
GACTTGTGGGCTTTGAAGGTTGCCACT
Found at i:3904809 original size:15 final size:13
Alignment explanation
Indices: 3904791--3904898 Score: 80
Period size: 13 Copynumber: 7.9 Consensus size: 13
3904781 TTTCAGACCC
3904791 TTTTTGTTGTTGTT
1 TTTTTGTT-TTGTT
3904805 GTTTTTGTTTT-TGT
1 -TTTTTGTTTTGT-T
*
3904819 TTTTTGCTTTGTT
1 TTTTTGTTTTGTT
3904832 TTTTTGTTTTTTGTT
1 TTTTTG--TTTTGTT
3904847 TTTTTGTTTT-TT
1 TTTTTGTTTTGTT
*
3904859 GCTTTTGTTTT-TT
1 -TTTTTGTTTTGTT
*
3904872 TTTTATTTATTTGGTT
1 TTTT-TGT-TTT-GTT
3904888 TTTTT-TTTTGT
1 TTTTTGTTTTGT
3904899 GGAGGACGCC
Statistics
Matches: 79, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
12 7 0.09
13 37 0.47
14 8 0.10
15 21 0.27
16 6 0.08
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.81
Consensus pattern (13 bp):
TTTTTGTTTTGTT
Found at i:3904865 original size:48 final size:46
Alignment explanation
Indices: 3904791--3904896 Score: 124
Period size: 48 Copynumber: 2.3 Consensus size: 46
3904781 TTTCAGACCC
* * * * *
3904791 TTTTTGTTGTTGTTGTTTTTGTTTTTGTTTTTTGCTTTGTTTTTTTGT
1 TTTTTGTT-TTTTTGTTTTTGCTTTTGTTTTTT-CTTTATTTATTTGG
*
3904839 TTTTTGTTTTTTTGTTTTTTGCTTTTGTTTTTTTTTTATTTATTTGG
1 TTTTTGTTTTTTTG-TTTTTGCTTTTGTTTTTTCTTTATTTATTTGG
3904886 TTTTT-TTTTTT
1 TTTTTGTTTTTT
3904897 GTGGAGGACG
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
46 6 0.12
47 20 0.39
48 25 0.49
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (46 bp):
TTTTTGTTTTTTTGTTTTTGCTTTTGTTTTTTCTTTATTTATTTGG
Found at i:3904875 original size:41 final size:42
Alignment explanation
Indices: 3904792--3904896 Score: 114
Period size: 41 Copynumber: 2.6 Consensus size: 42
3904782 TTCAGACCCT
* *
3904792 TTTTG-TTGTTGTTGTTTTTG-TTTTTGTTTTTTGCTTTGTTT
1 TTTTGTTTTTTGTT-TTTTTGTTTTTTGTCTTTTGCTTTGTTT
3904833 TTTTGTTTTTTGTTTTTTTGTTTTTTG-CTTTTG-TTT-TTT
1 TTTTGTTTTTTGTTTTTTTGTTTTTTGTCTTTTGCTTTGTTT
* *
3904872 TTTTATTTATTTGGTTTTTT-TTTTT
1 TTTTGTTT-TTTGTTTTTTTGTTTTT
3904897 GTGGAGGACG
Statistics
Matches: 57, Mismatches: 4, Indels: 8
0.83 0.06 0.12
Matches are distributed among these distances:
39 15 0.26
40 13 0.23
41 16 0.28
42 13 0.23
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (42 bp):
TTTTGTTTTTTGTTTTTTTGTTTTTTGTCTTTTGCTTTGTTT
Found at i:3904888 original size:20 final size:19
Alignment explanation
Indices: 3904791--3904895 Score: 90
Period size: 20 Copynumber: 5.3 Consensus size: 19
3904781 TTTCAGACCC
3904791 TTTTTGTTGTTGTT-GTTTTT
1 TTTTTGTT-TT-TTGGTTTTT
*
3904811 GTTTTTGTTTTTTGCTTTGTT
1 -TTTTTGTTTTTTGGTTT-TT
3904832 TTTTTGTTTTTT-GTTTTT
1 TTTTTGTTTTTTGGTTTTT
*
3904850 TTGTTT-TTTGCTTTTGTTTTT
1 TT-TTTGTTT--TTTGGTTTTT
*
3904871 TTTTTATTTATTTGGTTTTT
1 TTTTTGTTT-TTTGGTTTTT
3904891 TTTTT
1 TTTTT
3904896 TGTGGAGGAC
Statistics
Matches: 73, Mismatches: 4, Indels: 15
0.79 0.04 0.16
Matches are distributed among these distances:
18 7 0.10
19 8 0.11
20 37 0.51
21 21 0.29
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (19 bp):
TTTTTGTTTTTTGGTTTTT
Found at i:3904892 original size:35 final size:35
Alignment explanation
Indices: 3904815--3904894 Score: 99
Period size: 36 Copynumber: 2.3 Consensus size: 35
3904805 GTTTTTGTTT
* **
3904815 TTGTTTTTTGCTTTGTTTTTTTGTTTTTTGTTTTT
1 TTGTTTTTTGCTTTGTTTTTTTGTTTTTTATTTGG
3904850 TTGTTTTTTGCTTTTGTTTTTTT-TTTATTTATTTGG
1 TTGTTTTTTGC-TTTGTTTTTTTGTTT-TTTATTTGG
*
3904886 TTTTTTTTT
1 TTGTTTTTT
3904895 TTGTGGAGGA
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
35 14 0.36
36 25 0.64
ACGTcount: A:0.03, C:0.03, G:0.12, T:0.82
Consensus pattern (35 bp):
TTGTTTTTTGCTTTGTTTTTTTGTTTTTTATTTGG
Found at i:3904897 original size:32 final size:30
Alignment explanation
Indices: 3904803--3904898 Score: 90
Period size: 32 Copynumber: 3.1 Consensus size: 30
3904793 TTTGTTGTTG
* *
3904803 TTGTTTTTGTTTTTGTTTTTTGCTTTGTTTTT
1 TTGTTTTT-TTTTT-TTTTTTGGTTTTTTTTT
* *
3904835 TTG--TTTTTTGTTTTTTT-GTTTTTTGCTT
1 TTGTTTTTTTTTTTTTTTTGGTTTTTT-TTT
3904863 TTGTTTTTTTTTTATTTATTTGGTTTTTTTTT
1 TTGTTTTTTTTTT-TTT-TTTGGTTTTTTTTT
3904895 TTGT
1 TTGT
3904899 GGAGGACGCC
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
27 5 0.10
28 11 0.21
29 4 0.08
30 10 0.19
31 3 0.06
32 12 0.23
33 7 0.13
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (30 bp):
TTGTTTTTTTTTTTTTTTTGGTTTTTTTTT
Found at i:3909828 original size:13 final size:13
Alignment explanation
Indices: 3909810--3909835 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3909800 CAATTTTTGG
3909810 TGTATCGATACAT
1 TGTATCGATACAT
3909823 TGTATCGATACAT
1 TGTATCGATACAT
3909836 ACTTGGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3909848 original size:32 final size:33
Alignment explanation
Indices: 3909790--3909853 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3909780 ACAAAGCCAA
**
3909790 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
*
3909823 TGTATCGATAC-ATACTTGGTTTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
3909854 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Done.