Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold421
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 441760
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
File 1 of 3
Found at i:5946 original size:10 final size:9
Alignment explanation
Indices: 5920--5945 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
5910 TAATCTTCAT
5920 AAAAAAAAC
1 AAAAAAAAC
5929 AAAAAAAAC
1 AAAAAAAAC
5938 AAAAAAAA
1 AAAAAAAA
5946 AGGGAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:6902 original size:31 final size:32
Alignment explanation
Indices: 6882--7186 Score: 256
Period size: 33 Copynumber: 9.0 Consensus size: 32
6872 AAAGTCCATG
*
6882 ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACG
1 ACTCCGTGGCACCTTTTTC-TTT-AAAGCCCACA
* *
6916 ACTCAGTGGCA-TTTTTTCTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTCTTTAAAGCCCACA
* * *
6947 ACTCCGTGGCACCTTGTTCCTTTTAAGTCCACA
1 ACTCCGTGGCACCTT-TTTCTTTAAAGCCCACA
* *
6980 ACTCCATGGCACTTTTTTCATTTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTC---TTTAAAGCCCACA
**
7015 ACTCTATGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCAC-CTTTTT--C-TTT-AAAGCCCACA
7052 ACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTC--TTTAAAGCCCACA
7086 ACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCAC-CTTTTT--C-TTT-AAAGCCCACA
* * * *
7123 ACTACGTGGCACTCTTTTCCTTTTAAGTCCACA
1 ACTCCGTGGCAC-CTTTTTCTTTAAAGCCCACA
* * *
7156 AGTCGGTGGCAACCTTCTTC--TAAAGCCCACA
1 ACTCCGTGGC-ACCTTTTTCTTTAAAGCCCACA
7187 CAAGTCGGTG
Statistics
Matches: 228, Mismatches: 28, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
31 28 0.12
32 8 0.04
33 53 0.23
34 38 0.17
35 33 0.14
36 19 0.08
37 48 0.21
38 1 0.00
ACGTcount: A:0.22, C:0.32, G:0.12, T:0.33
Consensus pattern (32 bp):
ACTCCGTGGCACCTTTTTCTTTAAAGCCCACA
Found at i:6919 original size:34 final size:34
Alignment explanation
Indices: 6882--7176 Score: 298
Period size: 37 Copynumber: 8.6 Consensus size: 34
6872 AAAGTCCATG
*
6882 ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACG
1 ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACA
* *
6916 ACTCAGTGGCA-TTTTTTC-TTT-AAAGCCCACA
1 ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACA
* *
6947 ACTCCGTGGCACCTTGTTCCTTTT--AAGTCCACA
1 ACTCCGTGGCACCTT-TTTCTTTTCAAAGCCCACA
* * *
6980 ACTCCATGGCACTTTTTTCATTTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTC-TTTTCAAAGCCCACA
**
7015 ACTCTATGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACA
*
7052 ACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACA
1 ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACA
7086 ACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACA
* * *
7123 ACTACGTGGCACTCTTTTCCTTTT--AAGTCCACA
1 ACTCCGTGGCAC-CTTTTTCTTTTCAAAGCCCACA
* * *
7156 AGTCGGTGGCAACCTTCTTCT
1 ACTCCGTGGC-ACCTTTTTCT
7177 AAAGCCCACA
Statistics
Matches: 222, Mismatches: 26, Indels: 27
0.81 0.09 0.10
Matches are distributed among these distances:
31 19 0.09
32 8 0.04
33 55 0.25
34 42 0.19
35 30 0.14
36 11 0.05
37 56 0.25
38 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.35
Consensus pattern (34 bp):
ACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACA
Found at i:7046 original size:37 final size:36
Alignment explanation
Indices: 6882--7146 Score: 315
Period size: 37 Copynumber: 7.7 Consensus size: 36
6872 AAAGTCCATG
*
6882 ACTCCGTGGCAC-CTTTTT-CTTTTCAAAGCCCACG
1 ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
*
6916 ACTCAGTGGCA-T-TTTTT-C-TTT-AAAGCCCACA
1 ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
* *
6947 ACTCCGTGGCAC-CTTGTTCCTTTT--AAGTCCACA
1 ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
* * *
6980 ACTCCATGGCACT-TTTTTCATTTTTAAAGCCCACA
1 ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
**
7015 ACTCTATGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTCTTTTT-CCTTTTCAAAGCCCACA
*
7052 ACTCCGTGGCAC-CTTTTT-CTTTTTAAAGCCCACA
1 ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
7086 ACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACA
1 ACTCCGTGGCACTCTTTTT-CCTTTTCAAAGCCCACA
*
7123 ACTACGTGGCACTC-TTTTCCTTTT
1 ACTCCGTGGCACTCTTTTTCCTTTT
7147 AAGTCCACAA
Statistics
Matches: 201, Mismatches: 17, Indels: 25
0.83 0.07 0.10
Matches are distributed among these distances:
31 19 0.09
32 7 0.03
33 35 0.17
34 40 0.20
35 32 0.16
36 15 0.07
37 53 0.26
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.35
Consensus pattern (36 bp):
ACTCCGTGGCACTCTTTTTCCTTTTCAAAGCCCACA
Found at i:7096 original size:71 final size:69
Alignment explanation
Indices: 6882--7171 Score: 335
Period size: 71 Copynumber: 4.2 Consensus size: 69
6872 AAAGTCCATG
* * *
6882 ACTCCGTGGCACCTTTTT-CTTTTCAAAGCCCACGACTCAGTGGCA--TTTTT-TCTTTAAAGCC
1 ACTCCGTGGCACCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCC
6943 CACA
66 CACA
* * * *
6947 ACTCCGTGGCACCTTGTTCCTTTT--AAGTCCACAACTCCATGGCACTTTTTTCATTTTTAAAGC
1 ACTCCGTGGCACCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTTAAAGC
7010 CCACA
65 CCACA
**
7015 ACTCTATGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAG
1 ACTCCGTGGCAC-CTTTTT-CCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAG
7080 CCCACA
64 CCCACA
* *
7086 ACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTACGTGGCA-CTCTTTTCCTTTT-AA
1 ACTCCGTGGCAC-CTTTTT-CCTTTTCAAAGCCCACAACTCCGTGGCACCT-TTTTCTTTTTAAA
*
7149 GTCCACA
63 GCCCACA
* *
7156 AGTCGGTGGCAACCTT
1 ACTCCGTGGC-ACCTT
7172 CTTCTAAAGC
Statistics
Matches: 195, Mismatches: 19, Indels: 17
0.84 0.08 0.07
Matches are distributed among these distances:
64 16 0.08
65 17 0.09
66 10 0.05
68 24 0.12
69 5 0.03
70 27 0.14
71 71 0.36
72 25 0.13
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (69 bp):
ACTCCGTGGCACCTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCC
CACA
Found at i:7218 original size:32 final size:33
Alignment explanation
Indices: 7152--7272 Score: 210
Period size: 33 Copynumber: 3.7 Consensus size: 33
7142 CTTTTAAGTC
7152 CACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTC-TCTAAAGCCCA
7185 CACAAGTCGGTGGCAACCCTTCTC-AAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
*
7217 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCA
1 CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
7250 CACAAGTCGGTGGCAACCCTTCT
1 CACAAGTCGGTGGCAACCCTTCT
7273 AAGCCCAATA
Statistics
Matches: 84, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
32 31 0.37
33 48 0.57
34 5 0.06
ACGTcount: A:0.27, C:0.35, G:0.19, T:0.19
Consensus pattern (33 bp):
CACAAGTCGGTGGCAACCCTTCTCTAAAGCCCA
Found at i:7227 original size:65 final size:63
Alignment explanation
Indices: 7152--7279 Score: 222
Period size: 65 Copynumber: 2.0 Consensus size: 63
7142 CTTTTAAGTC
7152 CACAAGTCGGTGGCAACC-TTCTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTCAAAGCCC
1 CACAAGTCGGTGGCAACCATTC-TCTAAAGCCCACACAAGTCGGTGGCAACCCTTCT--AAGCCC
7216 A
63 A
7217 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
1 CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
7280 ATATAGCTGG
Statistics
Matches: 62, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
63 7 0.11
65 52 0.84
66 3 0.05
ACGTcount: A:0.28, C:0.35, G:0.19, T:0.18
Consensus pattern (63 bp):
CACAAGTCGGTGGCAACCATTCTCTAAAGCCCACACAAGTCGGTGGCAACCCTTCTAAGCCCA
Found at i:7330 original size:49 final size:49
Alignment explanation
Indices: 7272--8170 Score: 1122
Period size: 49 Copynumber: 18.8 Consensus size: 49
7262 GCAACCCTTC
*
7272 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7321 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7364 TAAGCCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7407 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7456 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7499 TAAGCCCAATATAGCTGACCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7548 TAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7597 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7640 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATCGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
7689 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7738 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * * *
7787 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
*
7836 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * *
7885 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* * * *
7934 TAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
7982 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
* *
8025 TAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGACACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTT
* * * *
8077 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC----T-TCATCTT
* * * * *
8132 TAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
8171 TCTTTATCAC
Statistics
Matches: 756, Mismatches: 63, Indels: 56
0.86 0.07 0.06
Matches are distributed among these distances:
43 194 0.26
45 4 0.01
47 3 0.00
48 44 0.06
49 430 0.57
50 1 0.00
52 38 0.05
53 2 0.00
55 39 0.05
56 1 0.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.31
Consensus pattern (49 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTT
Found at i:8100 original size:52 final size:55
Alignment explanation
Indices: 8022--8172 Score: 191
Period size: 52 Copynumber: 2.8 Consensus size: 55
8012 ACATTGGCAC
*
8022 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGACA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * *
8074 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
* * * * * *
8129 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATC
8173 TTTATCACTT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
52 38 0.46
53 2 0.02
54 5 0.06
55 38 0.46
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGACATCCTTTTTCTCAT
Found at i:8110 original size:95 final size:92
Alignment explanation
Indices: 7931--8121 Score: 267
Period size: 95 Copynumber: 2.0 Consensus size: 92
7921 GCACCTTCAT
* * *
7931 CTTTAAATCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTTAAGTCCAATGTAG
1 CTTTAAATCCAATATAGCTAGCCTTGAATCAGCACATTGACACCTCACCTTTAAGTCCAATGTAG
*
7996 CTGGCCTTGAATCAGCACATTGGCA-C
66 CTGGCCTTGAATCAGCACATTGACATC
* * * *
8022 CTTTAAGTCCAATATAGCTAGCCTTGAATCAGCATATTGACACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAATCCAATATAGCTAGCCTTGAATCAGCACATTGACACC---T-CACCTTTAAGTCCAAT
8087 GTAGCTGGCCTTGAATCAGCACATTGACATC
62 GTAGCTGGCCTTGAATCAGCACATTGACATC
8118 CTTT
1 CTTT
8122 TTCTCATCTT
Statistics
Matches: 87, Mismatches: 8, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
91 39 0.45
94 1 0.01
95 42 0.48
96 5 0.06
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (92 bp):
CTTTAAATCCAATATAGCTAGCCTTGAATCAGCACATTGACACCTCACCTTTAAGTCCAATGTAG
CTGGCCTTGAATCAGCACATTGACATC
Found at i:9011 original size:33 final size:33
Alignment explanation
Indices: 8974--9040 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
8964 TTCAACGATT
8974 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
9007 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
9040 T
1 T
9041 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:9012 original size:13 final size:13
Alignment explanation
Indices: 8994--9018 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8984 CATAAAATGT
8994 TGTATCGATACAA
1 TGTATCGATACAA
9007 TGTATCGATACA
1 TGTATCGATACA
9019 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:9100 original size:13 final size:13
Alignment explanation
Indices: 9082--9106 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9072 ATTACTCAAA
9082 TGTATCGATACAT
1 TGTATCGATACAT
9095 TGTATCGATACA
1 TGTATCGATACA
9107 CCGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:9171 original size:52 final size:52
Alignment explanation
Indices: 9115--9235 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
9105 CACCGATCTT
*
9115 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATCAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATCAAA
* *
9167 TGTATCGATACATGCAAGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATCAAA
9219 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
9236 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATCAAA
Found at i:10361 original size:77 final size:77
Alignment explanation
Indices: 10251--10405 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
10241 CAAGTTAAGT
10251 TCAAGCTAGCCTCAATCAATGAGGATTAGCTTGGATTTAAGCTTTTTATCAAATTGACACTTCAA
1 TCAAGCTAGCCTCAATCAATGAGGATTAGCTTGGATTTAAGCTTTTTATCAAATTGACACTTCAA
10316 TCTTGGGGTAAA
66 TCTTGGGGTAAA
10328 TCAAGCTAGCCTCAATCAATGAGGATTAGCTTGGATTTAAGCTTTTTATCAAATTGACACTTCAA
1 TCAAGCTAGCCTCAATCAATGAGGATTAGCTTGGATTTAAGCTTTTTATCAAATTGACACTTCAA
10393 TCTTGGGGTAAA
66 TCTTGGGGTAAA
10405 T
1 T
10406 TTAGTTTCCT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (77 bp):
TCAAGCTAGCCTCAATCAATGAGGATTAGCTTGGATTTAAGCTTTTTATCAAATTGACACTTCAA
TCTTGGGGTAAA
Found at i:21335 original size:21 final size:19
Alignment explanation
Indices: 21288--21341 Score: 63
Period size: 19 Copynumber: 2.7 Consensus size: 19
21278 GCAGGGTAGC
21288 TTTGTATCGATACAGCACT
1 TTTGTATCGATACAGCACT
* **
21307 TATGTATCGATACATTTACT
1 TTTGTATCGATACA-GCACT
21327 ATTTGTATCGATACA
1 -TTTGTATCGATACA
21342 AATTGTTGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.41
Consensus pattern (19 bp):
TTTGTATCGATACAGCACT
Found at i:25672 original size:37 final size:37
Alignment explanation
Indices: 25597--25678 Score: 110
Period size: 37 Copynumber: 2.2 Consensus size: 37
25587 TTATATCATA
* *
25597 AAAAAATAAATATATATAATATTCTAGCATAAACATT
1 AAAAAATAAACATATATAATATTCTAACATAAACATT
* ** *
25634 AAAGAATAAACATATATAATATTCTAATGTAAATATT
1 AAAAAATAAACATATATAATATTCTAACATAAACATT
25671 AAAAAATA
1 AAAAAATA
25679 TGTTATTTAT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.59, C:0.06, G:0.04, T:0.32
Consensus pattern (37 bp):
AAAAAATAAACATATATAATATTCTAACATAAACATT
Found at i:32109 original size:18 final size:18
Alignment explanation
Indices: 32086--32122 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
32076 TATGAAGGAA
*
32086 TATTTTTGGAATACTCTT
1 TATTTTTAGAATACTCTT
32104 TATTTTTAGAATACTCTT
1 TATTTTTAGAATACTCTT
32122 T
1 T
32123 TTAATCTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.11, G:0.08, T:0.57
Consensus pattern (18 bp):
TATTTTTAGAATACTCTT
Found at i:32334 original size:30 final size:29
Alignment explanation
Indices: 32278--32333 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
32268 ATAAATTCAC
* *
32278 AAAATAAAATAGGAGAGAAAAGAAAAACG
1 AAAAGAAAATAGGAAAGAAAAGAAAAACG
32307 AAAAGAAAATGAGGAAAG-AAAGAAAAA
1 AAAAGAAAAT-AGGAAAGAAAAGAAAAA
32334 AAGAGAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 18 0.75
30 6 0.25
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (29 bp):
AAAAGAAAATAGGAAAGAAAAGAAAAACG
Found at i:38990 original size:18 final size:19
Alignment explanation
Indices: 38967--39008 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
38957 AATATTAATG
38967 AAAAATT-AATTTTATATT
1 AAAAATTGAATTTTATATT
* *
38985 AAAAATTGATTTTTCTATT
1 AAAAATTGAATTTTATATT
39004 AAAAA
1 AAAAA
39009 AATGGGTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
AAAAATTGAATTTTATATT
Found at i:40496 original size:28 final size:28
Alignment explanation
Indices: 40420--40498 Score: 74
Period size: 28 Copynumber: 2.8 Consensus size: 28
40410 AGCATAAAAT
*
40420 ATTTGTTAATTAAATTTAA-AATAAGAAA
1 ATTT-TTAATTAAATTTAATATTAAGAAA
** *
40448 ATAATT-ATTAATATATT-ATATTAATAAA
1 ATTTTTAATTAA-AT-TTAATATTAAGAAA
40476 ATTTTTAATTAAATTTAATATTA
1 ATTTTTAATTAAATTTAATATTA
40499 TCAAATTAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
26 5 0.12
27 7 0.17
28 23 0.57
29 5 0.12
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.47
Consensus pattern (28 bp):
ATTTTTAATTAAATTTAATATTAAGAAA
Found at i:49393 original size:2 final size:2
Alignment explanation
Indices: 49382--49424 Score: 59
Period size: 2 Copynumber: 21.0 Consensus size: 2
49372 GTGTGTGTGT
* *
49382 GA GA GT GA GA GA GA GA GA GA GA GA GA GA GA GA GCT GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G-A GA GA GA GA
49425 CAAAAGGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
2 35 0.97
3 1 0.03
ACGTcount: A:0.44, C:0.02, G:0.49, T:0.05
Consensus pattern (2 bp):
GA
Found at i:49806 original size:24 final size:24
Alignment explanation
Indices: 49774--49822 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
49764 AATTAAAAAC
49774 TTCTCACCAAAATCCATCATTCAT
1 TTCTCACCAAAATCCATCATTCAT
*
49798 TTCTCACCAAAATCCATTATTCAT
1 TTCTCACCAAAATCCATCATTCAT
49822 T
1 T
49823 CTTTTGTACA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.31, G:0.00, T:0.37
Consensus pattern (24 bp):
TTCTCACCAAAATCCATCATTCAT
Found at i:58345 original size:51 final size:51
Alignment explanation
Indices: 58220--58387 Score: 250
Period size: 51 Copynumber: 3.3 Consensus size: 51
58210 ATTTTTGAGA
* *
58220 GGATACTCCAACCCCGGTTTTATTTTCAAAACACTGATTTTTCACT-A-TCG
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCGATTTTTCA-TAATTAG
* *
58270 GGATACTCCAACCCCGGTTTTATTTTCAGAACACCGATTTTCCATAATTAG
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCGATTTTTCATAATTAG
* * *
58321 GGATACTCCAACCTCGGTTTTATTTTTAAAACACCGATTTTTCATAATCAG
1 GGATACTCCAACCCCGGTTTTATTTTCAAAACACCGATTTTTCATAATTAG
58372 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
58388 TTATTTTCGA
Statistics
Matches: 106, Mismatches: 10, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
49 1 0.01
50 42 0.40
51 63 0.59
ACGTcount: A:0.27, C:0.26, G:0.13, T:0.33
Consensus pattern (51 bp):
GGATACTCCAACCCCGGTTTTATTTTCAAAACACCGATTTTTCATAATTAG
Found at i:58454 original size:79 final size:79
Alignment explanation
Indices: 58320--58779 Score: 418
Period size: 79 Copynumber: 5.8 Consensus size: 79
58310 TCCATAATTA
* * * *
58320 GGGATACTCCAAC-CTCGGTTTTATTTTTAAAACACCGATTTTTCATAATC-AGGGATACTCCAA
1 GGGATACTCCAACTC-CGATTTTATTTTTAAAACATCAAATTTTCATAATCGA-GGATACTCCAA
58383 CCCCGTTATTTTCGAG
64 CCCCGTTATTTTCGAG
* * *
58399 GGGATACTCCAACTCCGATTTTATTTTTAAAACATCAAATTTTCATAATCGGGGATACTTCAACT
1 GGGATACTCCAACTCCGATTTTATTTTTAAAACATCAAATTTTCATAATCGAGGATACTCCAACC
* *
58464 CCGTTATTTCCAAG
66 CCGTTATTTTCGAG
* * ** * * * *
58478 GGAATACTCTAACTCC-AGTTTTATTTCCAAAACACCGATTTTTCATAATCGAGGATACTTCAAC
1 GGGATACTCCAACTCCGA-TTTTATTTTTAAAACATCAAATTTTCATAATCGAGGATACTCCAAC
* *
58542 CTCGTTATTTTTGAG
65 CCCGTTATTTTCGAG
* * * **
58557 GGGATACTCCAA-TCCTGGTTTTATTTTCAAAACATCAATTTTTCACCATCG-GGATACTCCAAC
1 GGGATACTCCAACTCC-GATTTTATTTTTAAAACATCAAATTTTCATAATCGAGGATACTCCAAC
*
58620 CCCATTATTTTCGAG
65 CCCGTTATTTTCGAG
* * * ** *
58635 GTGATACTCCAA-TCCCGATTTTTATTTCTAAAATA-CTGATTTTCCATAATC-AGGATACTTCA
1 GGGATACTCCAACT-CCGA-TTTTATTTTTAAAACATCAAATTTT-CATAATCGAGGATACTCCA
* *
58697 ACCCCATTATTTTCGAA
63 ACCCCGTTATTTTCGAG
* * * * * * *
58714 GGAATGCTCCAAC-CCCACTTTATTTTTAAAACATC-GATTTTCTACAATCGAAGATACTCCAAC
1 GGGATACTCCAACTCCGATTTTATTTTTAAAACATCAAATTTTC-ATAATCGAGGATACTCCAAC
58777 CCC
65 CCC
58780 AGTTTTATTT
Statistics
Matches: 312, Mismatches: 56, Indels: 27
0.79 0.14 0.07
Matches are distributed among these distances:
76 1 0.00
77 24 0.08
78 63 0.20
79 223 0.71
80 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (79 bp):
GGGATACTCCAACTCCGATTTTATTTTTAAAACATCAAATTTTCATAATCGAGGATACTCCAACC
CCGTTATTTTCGAG
Found at i:58770 original size:157 final size:154
Alignment explanation
Indices: 58319--58780 Score: 527
Period size: 158 Copynumber: 2.9 Consensus size: 154
58309 TTCCATAATT
* *
58319 AGGGATACTCCAACCTCG-GTTTTATTTTTAAAACACCGATTTTTCATAATCAGGGATACTCCAA
1 AGGGATACTCCAACC-CGAGTTTTATTTCTAAAACACCGATTTTTCATAATCA-GGATACTTCAA
*
58383 CCCCGTTATTTTCGAGGGGATACTCCAACTCCGATTTTATTTTTAAAACATCAAATTTTC-ATAA
64 CCCCGTTATTTTCGAGGGGATACTCCAAC-CCGATTTTATTTTTAAAACATC-AATTTTCTACAA
* * *
58447 TCGGGGATACTTCAACTCCGTTATTTCCA
127 TC-GGGATACTCCAACCCCATTATTTCCA
* *
58476 AGGGAATACTCTAACTCC-AGTTTTATTTCCAAAACACCGATTTTTCATAATCGAGGATACTTCA
1 AGGG-ATACTCCAAC-CCGAGTTTTATTTCTAAAACACCGATTTTTCATAATC-AGGATACTTCA
* * * * * *
58540 ACCTCGTTATTTTTGAGGGGATACTCCAATCCTGGTTTTATTTTCAAAACATCAATTTT-TCACC
63 ACCCCGTTATTTTCGAGGGGATACTCCAA-CCCGATTTTATTTTTAAAACATCAATTTTCT-ACA
* *
58604 ATCGGGATACTCCAACCCCATTATTTTCG
126 ATCGGGATACTCCAACCCCATTATTTCCA
* * * *
58633 AGGTGATACTCCAATCCCGATTTTTATTTCTAAAATACTGATTTTCCATAATCAGGATACTTCAA
1 AGG-GATACTCCAA-CCCGAGTTTTATTTCTAAAACACCGATTTTTCATAATCAGGATACTTCAA
* * * * * * *
58698 CCCCATTATTTTCGAAGGAATGCTCCAACCCCACTTTATTTTTAAAACATCGATTTTCTACAATC
64 CCCCGTTATTTTCGAGGGGATACTCCAACCCGATTTTATTTTTAAAACATCAATTTTCTACAATC
*
58763 GAAGATACTCCAACCCCA
129 G-GGATACTCCAACCCCA
58781 GTTTTATTTC
Statistics
Matches: 257, Mismatches: 36, Indels: 24
0.81 0.11 0.08
Matches are distributed among these distances:
156 29 0.11
157 94 0.37
158 131 0.51
159 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (154 bp):
AGGGATACTCCAACCCGAGTTTTATTTCTAAAACACCGATTTTTCATAATCAGGATACTTCAACC
CCGTTATTTTCGAGGGGATACTCCAACCCGATTTTATTTTTAAAACATCAATTTTCTACAATCGG
GATACTCCAACCCCATTATTTCCA
Found at i:59073 original size:21 final size:23
Alignment explanation
Indices: 59016--59064 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
59006 TTTATCCCTT
**
59016 TTTTATGTATTTTTGTGTGTTTA
1 TTTTATGTAAATTTGTGTGTTTA
59039 TTTTATGTAAATTTGTGTG-TTA
1 TTTTATGTAAATTTGTGTGTTTA
59061 TTTT
1 TTTT
59065 CTTTAATTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 7 0.29
23 17 0.71
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.67
Consensus pattern (23 bp):
TTTTATGTAAATTTGTGTGTTTA
Found at i:61764 original size:16 final size:16
Alignment explanation
Indices: 61712--61764 Score: 54
Period size: 16 Copynumber: 3.4 Consensus size: 16
61702 TTTTCGTTTT
61712 AATTTTTTTTA-TTCA
1 AATTTTTTTTAGTTCA
** *
61727 AATTTTTTAAAGTTTA
1 AATTTTTTTTAGTTCA
* *
61743 AGTTTTTTTTAGTTCG
1 AATTTTTTTTAGTTCA
61759 AATTTT
1 AATTTT
61765 GGGTTTAATT
Statistics
Matches: 28, Mismatches: 9, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
15 9 0.32
16 19 0.68
ACGTcount: A:0.26, C:0.04, G:0.08, T:0.62
Consensus pattern (16 bp):
AATTTTTTTTAGTTCA
Found at i:61981 original size:18 final size:18
Alignment explanation
Indices: 61943--61982 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
61933 TCAAAATGAT
*
61943 ATAAAATTAATTTGTTAC
1 ATAAAATTAATTTATTAC
*
61961 ATAAAATTAATTTATTTC
1 ATAAAATTAATTTATTAC
61979 ATAA
1 ATAA
61983 TTGATTATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (18 bp):
ATAAAATTAATTTATTAC
Found at i:65177 original size:15 final size:16
Alignment explanation
Indices: 65146--65180 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
65136 ATCATACTTA
65146 AAATATTTTATAATTT
1 AAATATTTTATAATTT
65162 AAATATTTTA-AATTT
1 AAATATTTTATAATTT
65177 AAAT
1 AAAT
65181 TTTAACAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 9 0.47
16 10 0.53
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AAATATTTTATAATTT
Found at i:65190 original size:15 final size:15
Alignment explanation
Indices: 65123--65190 Score: 50
Period size: 15 Copynumber: 4.5 Consensus size: 15
65113 ATTTTTTAAG
65123 TTAAAATTTAAATA-
1 TTAAAATTTAAATAT
* * * *
65137 TCATACTTAAAATATT
1 TTAAAATTTAAATA-T
*
65153 TTATAATTTAAATAT
1 TTAAAATTTAAATAT
*
65168 TTTAAATTTAAAT-T
1 TTAAAATTTAAATAT
65182 TTAACAATT
1 TTAA-AATT
65191 ATTTTTATTA
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
14 14 0.34
15 16 0.39
16 11 0.27
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAAAATTTAAATAT
Found at i:67227 original size:22 final size:23
Alignment explanation
Indices: 67175--67227 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
67165 ATTATTAAAA
*
67175 TATTATTTTTTATTAATATTTTT
1 TATTATTTTTAATTAATATTTTT
67198 TATATATTTTATAATT-A-ATTTTT
1 TAT-TATTTT-TAATTAATATTTTT
67221 TATTATT
1 TATTATT
67228 AAATAATAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 4 0.15
23 12 0.44
24 7 0.26
25 4 0.15
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
TATTATTTTTAATTAATATTTTT
Found at i:67237 original size:21 final size:22
Alignment explanation
Indices: 67188--67239 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
67178 TATTTTTTAT
**
67188 TAAT-ATTTTTTATATATTTTA
1 TAATAATTTTTTATATATTAAA
67209 TAATTAATTTTTTAT-TATTAAA
1 TAA-TAATTTTTTATATATTAAA
67231 TAATAATTT
1 TAATAATTT
67240 AAATTAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
21 9 0.33
22 9 0.33
23 9 0.33
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
TAATAATTTTTTATATATTAAA
Found at i:67608 original size:22 final size:21
Alignment explanation
Indices: 67575--67633 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
67565 GTTATCAAGT
67575 ATTTTAATATTTAATTCAAATA
1 ATTTTAATATTTAATT-AAATA
67597 ATTTATAA-ATTTAATTAAAT-
1 ATTT-TAATATTTAATTAAATA
* * *
67617 TTTTTCATTTTTAATTA
1 ATTTTAATATTTAATTA
67634 GTACCGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
19 2 0.06
20 11 0.34
21 4 0.12
22 12 0.38
23 3 0.09
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (21 bp):
ATTTTAATATTTAATTAAATA
Found at i:69030 original size:13 final size:13
Alignment explanation
Indices: 69014--69041 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
69004 GGGAAAAAAA
69014 TTGTGTTTATTTT
1 TTGTGTTTATTTT
69027 TTGTGTTTATTTT
1 TTGTGTTTATTTT
69040 TT
1 TT
69042 CACTTATTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.07, C:0.00, G:0.14, T:0.79
Consensus pattern (13 bp):
TTGTGTTTATTTT
Found at i:69102 original size:16 final size:16
Alignment explanation
Indices: 69063--69104 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
69053 AATATTATAA
*
69063 ATTTATACAAAATTTT
1 ATTTATATAAAATTTT
*
69079 ATTTATATATAATTTT
1 ATTTATATAAAATTTT
69095 ATTTATATAA
1 ATTTATATAA
69105 TTTTTTACGT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTATATAAAATTTT
Found at i:76134 original size:28 final size:28
Alignment explanation
Indices: 76102--76156 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
76092 TTAATTTTTA
* *
76102 TTTAAATTTTAA-AAAATAAGCATAAAGC
1 TTTAAATTATAAGAAAA-AAGAATAAAGC
*
76130 TTTAACTTATAAGAAAAAAGAATAAAG
1 TTTAAATTATAAGAAAAAAGAATAAAG
76157 ATACTTGACA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 19 0.83
29 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.09, T:0.29
Consensus pattern (28 bp):
TTTAAATTATAAGAAAAAAGAATAAAGC
Found at i:77962 original size:11 final size:11
Alignment explanation
Indices: 77948--78004 Score: 55
Period size: 11 Copynumber: 5.2 Consensus size: 11
77938 TACATTTTTG
77948 TTATGTTTTA-A
1 TTAT-TTTTATA
77959 TTATTTTTATA
1 TTATTTTTATA
*
77970 TTATTATTATA
1 TTATTTTTATA
*
77981 TTATATCTTA-A
1 TTAT-TTTTATA
*
77992 TTAATTTTATA
1 TTATTTTTATA
78003 TT
1 TT
78005 TGATATAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
10 9 0.23
11 26 0.67
12 4 0.10
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.65
Consensus pattern (11 bp):
TTATTTTTATA
Found at i:78375 original size:34 final size:34
Alignment explanation
Indices: 78301--78375 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 34
78291 AAATCTTATA
* *
78301 TATT-TATATAAATTTTAATATATTAATAATTTG
1 TATTATATAAAAATTTTAATAAATTAATAATTTG
* *
78334 TAATATATAAAAATTTTAATAAATTTATATATTT-
1 TATTATATAAAAATTTTAATAAATTAATA-ATTTG
78368 TATTATAT
1 TATTATAT
78376 TTATATTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
33 3 0.09
34 28 0.80
35 4 0.11
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (34 bp):
TATTATATAAAAATTTTAATAAATTAATAATTTG
Found at i:78377 original size:18 final size:18
Alignment explanation
Indices: 78298--78421 Score: 80
Period size: 18 Copynumber: 6.9 Consensus size: 18
78288 TTAAAATCTT
78298 ATATATTTATATAAATTTTA
1 ATATATTTATAT--ATTTTA
*
78318 ATATATTAATA-ATTTGTA
1 ATATATTTATATATTT-TA
* *
78336 ATATA--TAAAAATTTTA
1 ATATATTTATATATTTTA
*
78352 ATAAATTTATATATTTTA
1 ATATATTTATATATTTTA
*
78370 TTATATTTATATTATTTT-
1 ATATATTTATA-TATTTTA
* *
78388 TTATA-TGATAATTATTTTA
1 ATATATTTAT-A-TATTTTA
*
78407 AAATA-TTATATATTT
1 ATATATTTATATATTT
78422 ATATAAATTT
Statistics
Matches: 85, Mismatches: 12, Indels: 17
0.75 0.11 0.15
Matches are distributed among these distances:
16 8 0.09
17 16 0.19
18 39 0.46
19 12 0.14
20 10 0.12
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.56
Consensus pattern (18 bp):
ATATATTTATATATTTTA
Found at i:78426 original size:116 final size:118
Alignment explanation
Indices: 78225--78468 Score: 345
Period size: 116 Copynumber: 2.1 Consensus size: 118
78215 TTGCATATAG
* * * *
78225 TTTTATTAATTTTATTTATTTATATTATATTTATATATTTTTTTTACGTATGTGATAATTATTTT
1 TTTTAATAAATTTATATATTTATATTATATTTATATATATTTTTTAC-TA-GTGATAATTATTTT
* *
78290 AAAATCTTATATATTTATATAAATTTTAATATA-TTAATAATTTGTAATATATAAAAA
64 AAAATATTATATATTTATATAAATTTTAATA-AGTTAATAATTT-AAAT-TATAAAAA
78347 TTTTAATAAATTTATATATTT-TATTATATTTATAT-TATTTTTTA-TA-TGATAATTATTTTAA
1 TTTTAATAAATTTATATATTTATATTATATTTATATATATTTTTTACTAGTGATAATTATTTTAA
*
78408 AATATTATATATTTATATAAATTTTAATAAGTTAATAATTTAAATTATATAAA
66 AATATTATATATTTATATAAATTTTAATAAGTTAATAATTTAAATTATAAAAA
78461 TTTTAATA
1 TTTTAATA
78469 CTGTGCTTAT
Statistics
Matches: 114, Mismatches: 7, Indels: 10
0.87 0.05 0.08
Matches are distributed among these distances:
114 15 0.13
115 4 0.04
116 53 0.46
118 2 0.02
120 8 0.07
121 14 0.12
122 18 0.16
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (118 bp):
TTTTAATAAATTTATATATTTATATTATATTTATATATATTTTTTACTAGTGATAATTATTTTAA
AATATTATATATTTATATAAATTTTAATAAGTTAATAATTTAAATTATAAAAA
Found at i:81749 original size:16 final size:16
Alignment explanation
Indices: 81728--81807 Score: 79
Period size: 16 Copynumber: 5.0 Consensus size: 16
81718 ATGTTTGATC
*
81728 AATTTTTGTTTAAAAT
1 AATTTTTATTTAAAAT
*
81744 AATTTTTATTTAGAAT
1 AATTTTTATTTAAAAT
** *
81760 AATTCATATTTAAAAC
1 AATTTTTATTTAAAAT
* *
81776 AATTTTTATTCAAAAC
1 AATTTTTATTTAAAAT
* *
81792 AATTTGTGTTTAAAAT
1 AATTTTTATTTAAAAT
81808 TATACTTTTT
Statistics
Matches: 51, Mismatches: 13, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 51 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (16 bp):
AATTTTTATTTAAAAT
Found at i:81804 original size:32 final size:32
Alignment explanation
Indices: 81727--81806 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
81717 AATGTTTGAT
* * * *
81727 CAATTTTTGTTTAAAATAATTTTTATTTAGAA
1 CAATTTATGTTTAAAACAATTTTTATTCAAAA
* * *
81759 TAATTCATATTTAAAACAATTTTTATTCAAAA
1 CAATTTATGTTTAAAACAATTTTTATTCAAAA
*
81791 CAATTTGTGTTTAAAA
1 CAATTTATGTTTAAAA
81807 TTATACTTTT
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.41, C:0.06, G:0.05, T:0.47
Consensus pattern (32 bp):
CAATTTATGTTTAAAACAATTTTTATTCAAAA
Found at i:85217 original size:3 final size:3
Alignment explanation
Indices: 85209--85246 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
85199 TGGCTTTTAA
85209 AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
85247 TGTTATGTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.06
3 32 0.94
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:89482 original size:21 final size:22
Alignment explanation
Indices: 89449--89489 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
89439 TTTAATATTT
*
89449 ATAATATTTTTTATTTTAAATA
1 ATAATATTTTTTATATTAAATA
89471 ATAATA-TTTTTATATTAAA
1 ATAATATTTTTTATATTAAA
89490 AAGTTTAGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (22 bp):
ATAATATTTTTTATATTAAATA
Found at i:89641 original size:42 final size:42
Alignment explanation
Indices: 89589--89749 Score: 173
Period size: 42 Copynumber: 3.7 Consensus size: 42
89579 TTAATGATAT
*
89589 AAATATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATC
1 AAATATTTTATTTACGAACTAACTTTGAGATGAGCAGTGATC
* * **
89631 AAATGTTTTATTTACGACCTAACTTTGAGCCGAGCAAG-GATC
1 AAATATTTTATTTACGAACTAACTTTGAGATGAGC-AGTGATC
*
89673 ATGTACAATTATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATC
1 ----A-AA-TATTTTATTTACGAACTAACTTTGAGATGAGCAGTGATC
*
89721 AAATGTTTTATTTAC-AACCTAACTTTGAG
1 AAATATTTTATTTACGAA-CTAACTTTGAG
89750 CCGAGCAAGG
Statistics
Matches: 98, Mismatches: 12, Indels: 18
0.77 0.09 0.14
Matches are distributed among these distances:
41 2 0.02
42 55 0.56
43 4 0.04
44 1 0.01
46 1 0.01
47 4 0.04
48 31 0.32
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (42 bp):
AAATATTTTATTTACGAACTAACTTTGAGATGAGCAGTGATC
Found at i:89689 original size:48 final size:45
Alignment explanation
Indices: 89589--89768 Score: 160
Period size: 42 Copynumber: 4.1 Consensus size: 45
89579 TTAATGATAT
* * **
89589 AAATATTTTATTTACGAACTAAGTTTGAGATGAGC-AGTGATC---
1 AAATATTTTATTTACGACCTAACTTTGAGCCGAGCAAG-GATCATG
*
89631 AAATGTTTTATTTACGACCTAACTTTGAGCCGAGCAAGGATCATG
1 AAATATTTTATTTACGACCTAACTTTGAGCCGAGCAAGGATCATG
* * **
89676 TACAATTATTTTATTTACGAACTAAGTTTGAGATGAGC-AGTGATC---
1 -A-AA-TATTTTATTTACGACCTAACTTTGAGCCGAGCAAG-GATCATG
* *
89721 AAATGTTTTATTTACAACCTAACTTTGAGCCGAGCAAGGATCATG
1 AAATATTTTATTTACGACCTAACTTTGAGCCGAGCAAGGATCATG
89766 AAA
1 AAA
89769 AATGAGATTA
Statistics
Matches: 110, Mismatches: 16, Indels: 21
0.75 0.11 0.14
Matches are distributed among these distances:
42 64 0.58
43 6 0.05
44 1 0.01
45 3 0.03
46 1 0.01
47 4 0.04
48 31 0.28
ACGTcount: A:0.34, C:0.14, G:0.18, T:0.33
Consensus pattern (45 bp):
AAATATTTTATTTACGACCTAACTTTGAGCCGAGCAAGGATCATG
Found at i:89745 original size:90 final size:90
Alignment explanation
Indices: 89592--89765 Score: 339
Period size: 90 Copynumber: 1.9 Consensus size: 90
89582 ATGATATAAA
*
89592 TATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATCAAATGTTTTATTTACGACCTAACTTT
1 TATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATCAAATGTTTTATTTACAACCTAACTTT
89657 GAGCCGAGCAAGGATCATGTACAAT
66 GAGCCGAGCAAGGATCATGTACAAT
89682 TATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATCAAATGTTTTATTTACAACCTAACTTT
1 TATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATCAAATGTTTTATTTACAACCTAACTTT
89747 GAGCCGAGCAAGGATCATG
66 GAGCCGAGCAAGGATCATG
89766 AAAAATGAGA
Statistics
Matches: 83, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 83 1.00
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34
Consensus pattern (90 bp):
TATTTTATTTACGAACTAAGTTTGAGATGAGCAGTGATCAAATGTTTTATTTACAACCTAACTTT
GAGCCGAGCAAGGATCATGTACAAT
Found at i:89924 original size:24 final size:25
Alignment explanation
Indices: 89892--89940 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
89882 ATTGTATATT
*
89892 TAATTTAATTG-ATTTTTATAAAAA
1 TAATATAATTGAATTTTTATAAAAA
*
89916 TAATATAATTGAATTTTTTTAAAAA
1 TAATATAATTGAATTTTTATAAAAA
89941 ATTGAAAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.45
25 12 0.55
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (25 bp):
TAATATAATTGAATTTTTATAAAAA
Found at i:90920 original size:6 final size:6
Alignment explanation
Indices: 90909--90958 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
90899 GAGGGGGGCC
* * * * *
90909 GGAAGA GGAAGA GTAAGA GGAGGA GGAGGA GGACGA AGAAGA GGAAGA
1 GGAAGA GGAAGA GGAAGA GGAAGA GGAAGA GGAAGA GGAAGA GGAAGA
90957 GG
1 GG
90959 TTGGTGGTGG
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.44, C:0.02, G:0.52, T:0.02
Consensus pattern (6 bp):
GGAAGA
Found at i:90966 original size:3 final size:3
Alignment explanation
Indices: 90960--90988 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
90950 AGGAAGAGGT
90960 TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
1 TGG TGG TGG TGG TGG TGG TGG TGG TGG TG
90989 TATTAGGGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.66, T:0.34
Consensus pattern (3 bp):
TGG
Found at i:91476 original size:19 final size:19
Alignment explanation
Indices: 91454--91510 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
91444 TTTATATTAA
91454 TTTTATTAAATAAATTTAT
1 TTTTATTAAATAAATTTAT
*
91473 TTTTA--AAATTAAATTTAAA
1 TTTTATTAAA-TAAATTT-AT
*
91492 TTTT-TTAATTAAA-TTAT
1 TTTTATTAAATAAATTTAT
91509 TT
1 TT
91511 ATTTTATATT
Statistics
Matches: 31, Mismatches: 3, Indels: 10
0.70 0.07 0.23
Matches are distributed among these distances:
17 6 0.19
18 9 0.29
19 14 0.45
20 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTATTAAATAAATTTAT
Found at i:91916 original size:32 final size:34
Alignment explanation
Indices: 91876--91955 Score: 119
Period size: 32 Copynumber: 2.4 Consensus size: 34
91866 ATTTCTTGAG
*
91876 CTAACTCCAGTTCTACCGACC-AAGA-AAAAGAA
1 CTAACTCCAGTTCTACCGACCAAAAAGAAAAGAA
* *
91908 CTAGCTCCAGTCCTACCGACCAAAAAGAAAAGAA
1 CTAACTCCAGTTCTACCGACCAAAAAGAAAAGAA
91942 CTAACTCCAGTTCT
1 CTAACTCCAGTTCT
91956 GTTGTGACTT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
32 19 0.46
33 3 0.07
34 19 0.46
ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17
Consensus pattern (34 bp):
CTAACTCCAGTTCTACCGACCAAAAAGAAAAGAA
Found at i:92105 original size:17 final size:17
Alignment explanation
Indices: 92083--92127 Score: 56
Period size: 16 Copynumber: 2.7 Consensus size: 17
92073 TTTTAAAAAT
*
92083 TTTAAATTATTTTTAAG
1 TTTAAATTATTTTCAAG
*
92100 TTTAAA-TAATTTCAAG
1 TTTAAATTATTTTCAAG
*
92116 TTTAGATTATTT
1 TTTAAATTATTT
92128 CGGATTTAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.36, C:0.02, G:0.07, T:0.56
Consensus pattern (17 bp):
TTTAAATTATTTTCAAG
Found at i:92159 original size:16 final size:16
Alignment explanation
Indices: 92137--92175 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
92127 TCGGATTTAG
92137 ATCATTTT-GAATTCGA
1 ATCATTTTAG-ATTCGA
*
92153 ATTATTTTAGATTCGA
1 ATCATTTTAGATTCGA
92169 ATCATTT
1 ATCATTT
92176 CGGATTCGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.31, C:0.10, G:0.10, T:0.49
Consensus pattern (16 bp):
ATCATTTTAGATTCGA
Found at i:92181 original size:16 final size:16
Alignment explanation
Indices: 92124--92188 Score: 51
Period size: 16 Copynumber: 4.1 Consensus size: 16
92114 AGTTTAGATT
*
92124 ATTTCGGATT-TAGATC
1 ATTTCGGATTCGA-ATC
* * *
92140 ATTTTGAATTCGAATT
1 ATTTCGGATTCGAATC
**
92156 ATTTTAGATTCGAATC
1 ATTTCGGATTCGAATC
*
92172 ATTTCGGATTCGGATC
1 ATTTCGGATTCGAATC
92188 A
1 A
92189 ATCGAATTTA
Statistics
Matches: 38, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
16 37 0.97
17 1 0.03
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (16 bp):
ATTTCGGATTCGAATC
Found at i:93118 original size:16 final size:16
Alignment explanation
Indices: 93022--93118 Score: 92
Period size: 16 Copynumber: 6.1 Consensus size: 16
93012 TTCAAATCTT
*
93022 TTTAAATTTAAATTAT
1 TTTAAATTTAAATTAA
*
93038 TTTAAATTTAAATTAT
1 TTTAAATTTAAATTAA
*
93054 TTTAAGTTTTAAATT-A
1 TTTAA-ATTTAAATTAA
* **
93070 -TTAATTTTTTATTAA
1 TTTAAATTTAAATTAA
*
93085 TATAAA-TTAAATTAAA
1 TTTAAATTTAAATT-AA
93101 TTTAAATTTAAATTAA
1 TTTAAATTTAAATTAA
93117 TT
1 TT
93119 AATTAATTAA
Statistics
Matches: 67, Mismatches: 9, Indels: 10
0.78 0.10 0.12
Matches are distributed among these distances:
14 7 0.10
15 10 0.15
16 35 0.52
17 15 0.22
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (16 bp):
TTTAAATTTAAATTAA
Found at i:94831 original size:30 final size:30
Alignment explanation
Indices: 94795--94851 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 30
94785 TTGAGGAAGG
* * *
94795 AATACCATACAAATAATAGAATTCAATAAA
1 AATACCACACAAAGAATAGAAATCAATAAA
*
94825 AATACCACAGAAAGAATAGAAATCAAT
1 AATACCACACAAAGAATAGAAATCAAT
94852 GCAAAGTTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.60, C:0.14, G:0.07, T:0.19
Consensus pattern (30 bp):
AATACCACACAAAGAATAGAAATCAATAAA
Found at i:95146 original size:2 final size:2
Alignment explanation
Indices: 95139--95174 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
95129 AGAAAACCAA
95139 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
95175 TTTAACGAAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100094 original size:43 final size:42
Alignment explanation
Indices: 100033--100119 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 42
100023 GGTATTTACT
100033 TTTCGTACTCCTCGTTATTTGAGGTCAATGTGAAAAAAGGGAA
1 TTTCGTACTCCTCGTTATTTGAGGTCAATG-GAAAAAAGGGAA
*
100076 TTTCGTACTCCTCGTTATTTGAGGTCAATGGGAAAAAGGGAA
1 TTTCGTACTCCTCGTTATTTGAGGTCAATGGAAAAAAGGGAA
100118 TT
1 TT
100120 CTTGTGCATG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
42 13 0.30
43 30 0.70
ACGTcount: A:0.29, C:0.14, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCGTACTCCTCGTTATTTGAGGTCAATGGAAAAAAGGGAA
Found at i:103005 original size:2 final size:2
Alignment explanation
Indices: 102998--103036 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
102988 ACTTCACTTC
102998 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
103037 GGTGTTAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:106987 original size:88 final size:87
Alignment explanation
Indices: 106775--107094 Score: 321
Period size: 88 Copynumber: 3.7 Consensus size: 87
106765 GGGAATATAA
* * * * * * *
106775 GCATGGGATATCAGA-TTCTTTCTGATACAATAGATAATATTTGACTAATATC-TAATAAATTTC
1 GCATGGG-TATTAGATTTCTTT-TGACACAACAAAAAATATTTGAATAAT-GCATAATAAATTTC
*
106838 TTGGAACTCGAAAGAT-TGACAGAT
63 TTGGAATTCGAAAGATGTGACAGAT
* *
106862 GCATGGGTATCAGATTTCTTTTGACACGACAAAAAATA-TTGAAATAATGCATAATAAATTTCTT
1 GCATGGGTATTAGATTTCTTTTGACACAACAAAAAATATTTG-AATAATGCATAATAAATTTCTT
*
106926 GGAATTAGAAAGATGTGACAGAT
65 GGAATTCGAAAGATGTGACAGAT
* * * * * *
106949 GCATAGGGTATTGGATTTCTTTTGACACAATAGAAAATATTTGACTAGTGCTTAATAAATTTCTT
1 GCAT-GGGTATTAGATTTCTTTTGACACAACAAAAAATATTTGAATAATGCATAATAAATTTCTT
* *
107014 -GTATCCCGAAAGATGTGACAGAT
65 GGAAT-TCGAAAGATGTGACAGAT
** * *
107037 GCATGAGGTATTAGA-TTCTTTTGACATGACAAAAAATATTTGACTAATG-ATAAAAAAT
1 GCATG-GGTATTAGATTTCTTTTGACACAACAAAAAATATTTGAATAATGCATAATAAAT
107095 ATTGACCAAT
Statistics
Matches: 197, Mismatches: 28, Indels: 17
0.81 0.12 0.07
Matches are distributed among these distances:
85 4 0.02
86 56 0.28
87 58 0.29
88 76 0.39
89 3 0.02
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.33
Consensus pattern (87 bp):
GCATGGGTATTAGATTTCTTTTGACACAACAAAAAATATTTGAATAATGCATAATAAATTTCTTG
GAATTCGAAAGATGTGACAGAT
Found at i:107080 original size:19 final size:20
Alignment explanation
Indices: 107056--107097 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
107046 ATTAGATTCT
107056 TTTGAC-ATGACAAAAAATA
1 TTTGACAATGACAAAAAATA
*
107075 TTTGACTAATGATAAAAAATA
1 TTTGAC-AATGACAAAAAATA
107096 TT
1 TT
107098 GACCAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
21 14 0.70
ACGTcount: A:0.50, C:0.07, G:0.10, T:0.33
Consensus pattern (20 bp):
TTTGACAATGACAAAAAATA
Found at i:111032 original size:20 final size:20
Alignment explanation
Indices: 111007--111046 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
110997 CAAATAGTAA
*
111007 ATGTATTGATACATTTACTT
1 ATGTATCGATACATTTACTT
111027 ATGTATCGATACATTTACTT
1 ATGTATCGATACATTTACTT
111047 GGCAGTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (20 bp):
ATGTATCGATACATTTACTT
Found at i:111184 original size:9 final size:8
Alignment explanation
Indices: 111140--111186 Score: 55
Period size: 7 Copynumber: 6.0 Consensus size: 8
111130 ATATTGATAC
111140 AAATTATAA
1 AAATTAT-A
111149 AAATT-TA
1 AAATTATA
111156 AAATT-TA
1 AAATTATA
111163 AAATT-TA
1 AAATTATA
111170 AAATTATA
1 AAATTATA
111178 CAAATTATA
1 -AAATTATA
111187 TATCGGATGC
Statistics
Matches: 36, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.56
8 3 0.08
9 13 0.36
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (8 bp):
AAATTATA
Found at i:112026 original size:79 final size:79
Alignment explanation
Indices: 111962--112772 Score: 752
Period size: 79 Copynumber: 10.4 Consensus size: 79
111952 TATTTTAGAG
* * *
111962 ATAAAA-AGGGGTCGGAGTA-CCTCCTCAGAAATAACGGGGTTGGAGTATCTCTAATGGTGGAAA
1 ATAAAACAGGGGTTGGAGTATCC-CCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAA
112025 ATTGATGTTTTGGAA
65 ATTGATGTTTTGGAA
* ** *
112040 ATAAAACCA-GGGTTGGAGTATCCCC-CTGAAAATAACGGGGTCAGAGTATCCCTGATTGTGGAA
1 ATAAAA-CAGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCTCTGATTGTGGAA
*
112103 AATTGGTGTTTTGGAA
64 AATTGATGTTTTGGAA
* * * * *
112119 ATAAAACCGGAGTTTGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTTTGATTGTGAAAAA
1 ATAAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAAA
*
112184 TTGGTGTTTTGGAA
66 TTGATGTTTTGGAA
* ** * * *
112198 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAA
1 ATAAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAAA
* *
112263 TCGATGTTTTGAAA
66 TTGATGTTTTGGAA
** * *
112277 ATAAAATTGGGGTTAGAGTATCCCCTC-GAAAATAA------T-G-GTATC-CTCGATTATGGAA
1 ATAAAACAGGGGTTGGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCTCT-GATTGTGGAA
* *
112332 AATTGGTGTTTTGAAA
64 AATTGATGTTTTGGAA
** * * * * ** * *
112348 ATAAAATTGAGATTGGAGTATCCCCTCGGGAATAACAAGGTTGGAGTATCCCTAATTGT-GAAAA
1 ATAAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAAA
*
112412 TTCGATGTTTTGAAA
66 TT-GATGTTTTGGAA
* * * * *
112427 ATAAAACCGAGGTTGAAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAA
1 ATAAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAAA
112492 TT-AGTGTTTTGGAA
66 TTGA-TGTTTTGGAA
* * * *
112506 ATAAAATC-GAGGTTGGAGTATCCTCTCAAAAATAACGGGGTTGGAGTATC-CTCGATTGTGAAA
1 ATAAAA-CAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCT-GATTGTGGAA
*
112569 AATTGGTGTTTTGGAA
64 AATTGATGTTTTGGAA
* * * * * * * ** *
112585 ATGAAATC-GGAGCTGGAGTATTCCTTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAA
1 AT-AAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAA
112649 ATTGATGTTTTGGAA
65 ATTGATGTTTTGGAA
* * * *
112664 ATAAAACTA-GGGTTGGAGTATCCCCTCGGAAATAAC-GTGTTGGAGTAT-TCCCGATTGTGAAA
1 ATAAAAC-AGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCT-CTGATTGTGGAA
* *
112726 AATCGATGTTTTGGGA
64 AATTGATGTTTTGGAA
112742 ATAAAATC-GGGGTTGGAGTATCCCCTC-GAAA
1 ATAAAA-CAGGGGTTGGAGTATCCCCTCAGAAA
112773 ATAAAAATAT
Statistics
Matches: 621, Mismatches: 81, Indels: 63
0.81 0.11 0.08
Matches are distributed among these distances:
70 1 0.00
71 56 0.09
72 2 0.00
73 1 0.00
77 5 0.01
78 85 0.14
79 452 0.73
80 19 0.03
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (79 bp):
ATAAAACAGGGGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTCTGATTGTGGAAAA
TTGATGTTTTGGAA
Found at i:112231 original size:158 final size:158
Alignment explanation
Indices: 111975--112772 Score: 858
Period size: 158 Copynumber: 5.1 Consensus size: 158
111965 AAAAGGGGTC
* * * *
111975 GGAGTA-CCTCCTCAGAAATAACGGGGTTGGAGTATCTCTAATGGTGGAAAATTGATGTTTTGGA
1 GGAGTATCC-CCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTTGGA
* * * ** *
112039 AATAAAACCAGGGTTGGAGTATCCCC-CTGAAAATAACGGGGTCAGAGTATCCCTGATTGTGGAA
65 AATAAAACCGGGGTTGGAGTATCCCCTCAG-AAATAACAGGGTTGGAGTATCCCTGATTGTGAAA
* *
112103 AATTGGTGTTTTGGAAATAAAACCGGAGTT
129 AATTGATGTTTTGGAAATAAAATCGGAGTT
* ** *
112133 TGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCTTTGATTGTGAAAAATTGGTGTTTTGGAA
1 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTTGGAA
* *
112198 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAAGGTTGGAGTATCCCCGATTGTGAAAAA
66 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTATCCCTGATTGTGAAAAA
* * * *
112263 TCGATGTTTTGAAAATAAAATTGGGGTT
131 TTGATGTTTTGGAAATAAAATCGGAGTT
* * *
112291 AGAGTATCCCCTC-GAAAATAA------T-G-GTAT-CCTCGATTATGGAAAATTGGTGTTTTGA
1 GGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCT-GATTGTGGAAAATTGGTGTTTTGG
** * * * * * *
112346 AAATAAAATTGAGATTGGAGTATCCCCTCGGGAATAACAAGGTTGGAGTATCCCTAATTGTG-AA
64 AAATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTATCCCTGATTGTGAAA
* *
112410 AATTCGATGTTTTGAAAATAAAA-CCGAGGTT
129 AATT-GATGTTTTGGAAATAAAATCGGA-GTT
* * *
112441 GAAGTATCCCTTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTAGTGTTTTGGAA
1 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTTGGAA
* * * * *
112506 ATAAAATCGAGGTTGGAGTATCCTCTCAAAAATAACGGGGTTGGAGTAT-CCTCGATTGTGAAAA
66 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTATCCCT-GATTGTGAAAA
* * *
112570 ATTGGTGTTTTGGAAATGAAATCGGAGCT
130 ATTGATGTTTTGGAAATAAAATCGGAGTT
* * * ** * *
112599 GGAGTATTCCTTCGGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAA
1 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTTGGAA
** * *
112664 ATAAAACTAGGGTTGGAGTATCCCCTCGGAAATAAC-GTGTTGGAGTATTCCC-GATTGTGAAAA
66 ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTA-TCCCTGATTGTGAAAA
* * *
112727 ATCGATGTTTTGGGAATAAAATCGGGGTT
130 ATTGATGTTTTGGAAATAAAATCGGAGTT
112756 GGAGTATCCCCTC-GAAA
1 GGAGTATCCCCTCAGAAA
112773 ATAAAAATAT
Statistics
Matches: 537, Mismatches: 82, Indels: 44
0.81 0.12 0.07
Matches are distributed among these distances:
149 7 0.01
150 116 0.22
151 2 0.00
152 1 0.00
156 5 0.01
157 60 0.11
158 328 0.61
159 18 0.03
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.29
Consensus pattern (158 bp):
GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCTGATTGTGGAAAATTGGTGTTTTGGAA
ATAAAACCGGGGTTGGAGTATCCCCTCAGAAATAACAGGGTTGGAGTATCCCTGATTGTGAAAAA
TTGATGTTTTGGAAATAAAATCGGAGTT
Found at i:112382 original size:71 final size:71
Alignment explanation
Indices: 112243--112375 Score: 194
Period size: 71 Copynumber: 1.9 Consensus size: 71
112233 CAAGGTTGGA
* * *
112243 GTATCCCCGATTGTGAAAAATCGATGTTTTGAAAATAAAATTGGGGTTAGAGTATCCCCTCGAAA
1 GTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAAAATTGAGATTAGAGTATCCCCTCGAAA
112308 ATAATG
66 ATAATG
* * * * *
112314 GTATCCTCGATTATGGAAAATTGGTGTTTTGAAAATAAAATTGAGATTGGAGTATCCCCTCG
1 GTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAAAATTGAGATTAGAGTATCCCCTCG
112376 GGAATAACAA
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
71 54 1.00
ACGTcount: A:0.33, C:0.14, G:0.22, T:0.32
Consensus pattern (71 bp):
GTATCCCCGATTATGAAAAATCGATGTTTTGAAAATAAAATTGAGATTAGAGTATCCCCTCGAAA
ATAATG
Found at i:119199 original size:22 final size:24
Alignment explanation
Indices: 119174--119223 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
119164 AACGGAAAAG
**
119174 AAAATAACG-A-ACAAATTTACAT
1 AAAATAACGCACACAAAAATACAT
119196 AAAATAACGCACACAAAAATACAT
1 AAAATAACGCACACAAAAATACAT
119220 AAAA
1 AAAA
119224 AGGATGGATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 9 0.38
23 1 0.04
24 14 0.58
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (24 bp):
AAAATAACGCACACAAAAATACAT
Found at i:119552 original size:79 final size:79
Alignment explanation
Indices: 119452--119794 Score: 379
Period size: 79 Copynumber: 4.3 Consensus size: 79
119442 TCCCCTGATG
* * * * * **
119452 AAAAATTTGATATTTTGGAGATAAAATC-AGGGTTGAAGTATCCCCTTAAAAATAGCGGGGTTGA
1 AAAAAATTGATATTTTAGAAATAAAATCGA-GGTTGGAGTATCCCCTCAAAAATAATGGGGTTGA
**
119516 AGTATCCCTGA-GAGT
65 AGTATCCCCAATG-GT
* * * * **
119531 AAAAAATCGATATTTTAGAGATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAATGGGGTTGGC
1 AAAAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGAA
119596 GTATCCCCAATGGT
66 GTATCCCCAATGGT
* * * *
119610 GAAAAATTGATATTTT-GAAAATAAAATCGAGGTTGGAGTATTCCCTCAGAAATAATGGGGTTGG
1 AAAAAATTGATATTTTAG-AAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGA
119674 AGTATCCCCAATGGT
65 AGTATCCCCAATGGT
* * * * *
119689 GAAAAAA-TGAATATTTTAAAAATAAAATCGACGTTGGAGTATCCTCTCGAAAATAATGGGGTTA
1 -AAAAAATTG-ATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTG
*
119753 AAGTATCCCAAATGGT
64 AAGTATCCCCAATGGT
*
119769 AAAAAATTGATATTTTAAAAATAAAA
1 AAAAAATTGATATTTTAGAAATAAAA
119795 ATGGGATTAG
Statistics
Matches: 226, Mismatches: 31, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
78 1 0.00
79 156 0.69
80 69 0.31
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (79 bp):
AAAAAATTGATATTTTAGAAATAAAATCGAGGTTGGAGTATCCCCTCAAAAATAATGGGGTTGAA
GTATCCCCAATGGT
Found at i:119738 original size:159 final size:158
Alignment explanation
Indices: 119450--119794 Score: 426
Period size: 159 Copynumber: 2.2 Consensus size: 158
119440 CATCCCCTGA
* * * *
119450 TGAAAAATTTGATATTTTGGAGATAAAATCAGGGTTGAAGTATCCCCTTAAAAATAGCGGGGTTG
1 TGAAAAA-TTGATATTTTGAAAATAAAATCAGGGTTGAAGTATCCCCTCAAAAATAACGGGGTTG
** * * *
119515 AAGTATCCCTGAGAGTAAAAAATCGATATTTTAGAGATAAAACCGAGGTTGGAGTATCCCCTCGA
65 AAGTATCCCCAAGAGTAAAAAATCGATATTTTAAAAATAAAACCGACGTTGGAGTATCCCCTCGA
*** *
119580 AAATAATGGGGTTGGCGTATCCCCAATGG
130 AAATAATGGGGTTAAAGTATCCCAAATGG
* * * *
119609 TGAAAAATTGATATTTTGAAAATAAAATC-GAGGTTGGAGTATTCCCTCAGAAATAATGGGGTTG
1 TGAAAAATTGATATTTTGAAAATAAAATCAG-GGTTGAAGTATCCCCTCAAAAATAACGGGGTTG
* * *
119673 GAGTATCCCCAATG-GTGAAAAAAT-GAATATTTTAAAAATAAAATCGACGTTGGAGTATCCTCT
65 AAGTATCCCCAA-GAGT-AAAAAATCG-ATATTTTAAAAATAAAACCGACGTTGGAGTATCCCCT
119736 CGAAAATAATGGGGTTAAAGTATCCCAAATGG
127 CGAAAATAATGGGGTTAAAGTATCCCAAATGG
* *
119768 TAAAAAATTGATATTTTAAAAATAAAA
1 TGAAAAATTGATATTTTGAAAATAAAA
119795 ATGGGATTAG
Statistics
Matches: 160, Mismatches: 22, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
157 1 0.01
158 59 0.37
159 100 0.62
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (158 bp):
TGAAAAATTGATATTTTGAAAATAAAATCAGGGTTGAAGTATCCCCTCAAAAATAACGGGGTTGA
AGTATCCCCAAGAGTAAAAAATCGATATTTTAAAAATAAAACCGACGTTGGAGTATCCCCTCGAA
AATAATGGGGTTAAAGTATCCCAAATGG
Found at i:122640 original size:20 final size:20
Alignment explanation
Indices: 122605--122652 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 20
122595 TCGCCAAGAA
*
122605 AACC-AAAAAA-ACCAAAAC
1 AACCAAAAAAATAACAAAAC
122623 AACCAAAAAAATAACAAAAC
1 AACCAAAAAAATAACAAAAC
122643 AA--AAAAAAAT
1 AACCAAAAAAAT
122653 TGATACTTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
18 12 0.44
19 6 0.22
20 9 0.33
ACGTcount: A:0.77, C:0.19, G:0.00, T:0.04
Consensus pattern (20 bp):
AACCAAAAAAATAACAAAAC
Found at i:122650 original size:9 final size:9
Alignment explanation
Indices: 122598--122633 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
122588 TAAGAACTCG
*
122598 CCAAGAAAA
1 CCAAAAAAA
122607 CCAAAAAAA
1 CCAAAAAAA
*
122616 CCAAAACAA
1 CCAAAAAAA
122625 CCAAAAAAA
1 CCAAAAAAA
122634 TAACAAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.72, C:0.25, G:0.03, T:0.00
Consensus pattern (9 bp):
CCAAAAAAA
Found at i:130547 original size:80 final size:78
Alignment explanation
Indices: 130446--130695 Score: 283
Period size: 79 Copynumber: 3.2 Consensus size: 78
130436 AATAACGGGG
130446 TTGGAGTATCCCCTTCA-AAATAACGGGGTTGGAGTATCCCCAATTGTTAAAAAATAGATGATTT
1 TTGGAGTATCCCCTT-AGAAATAACGGGGTTGGAGTATCCCCAATTG-TAAAAAATAGATGATTT
130510 CAAAATAAAATCGAGA
64 CAAAATAAAATCG-GA
* * * * * * *
130526 TTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGACTATAAAAAATTGACG-TTTTA
1 TTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCAATTGTAAAAAATAGATGATTTCA
* *
130590 GAAATAAAACTGGGG
66 -AAATAAAA-TCGGA
* * * *
130605 TTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATCA-AT-ATCTG
1 TTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCAATTGTAAAAAAT-AGATGATTTC
*
130668 GAAATAAAATCGGA
65 AAAATAAAATCGGA
130682 GTTGGAGTATCCCC
1 -TTGGAGTATCCCC
130696 GATTATGGAA
Statistics
Matches: 142, Mismatches: 22, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
77 3 0.02
78 25 0.18
79 71 0.50
80 43 0.30
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.26
Consensus pattern (78 bp):
TTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCAATTGTAAAAAATAGATGATTTCA
AAATAAAATCGGA
Found at i:130693 original size:50 final size:51
Alignment explanation
Indices: 130632--130810 Score: 211
Period size: 51 Copynumber: 3.5 Consensus size: 51
130622 AAATAACGGG
* * * * *
130632 GTTGGAGTATCCCCAATTGTGAAAAATCAAT-ATCTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGA
* * * *
130682 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGA
* * *
130733 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGG-
1 GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGA
*
130783 GATTGGAGTATCCCCGA-GATGAAAAATC
1 G-TTGGAGTATCCCCGATTATGAAAAATC
130811 TAGCAATTTA
Statistics
Matches: 109, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
50 34 0.31
51 75 0.69
ACGTcount: A:0.36, C:0.12, G:0.25, T:0.27
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTATGAAAAATCGATGTTTTGGAAATAAAATCGGA
Found at i:133124 original size:20 final size:19
Alignment explanation
Indices: 133099--133172 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
133089 AAAATGCCTG
*
133099 AATGTATCGATACATTGTAA
1 AATGTATCGATACAATG-AA
*
133119 AATGTATCGATACAATGAGC
1 AATGTATCGATACAATGA-A
133139 AATGTATCGATACAATGCAA
1 AATGTATCGATACAATG-AA
133159 AATGTATCGATACA
1 AATGTATCGATACA
133173 TCTGGGTAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:133657 original size:42 final size:43
Alignment explanation
Indices: 133598--133732 Score: 132
Period size: 42 Copynumber: 3.1 Consensus size: 43
133588 CCCGTTTTTC
* * *
133598 GAGGATAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTCTCT
1 GAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
* * *
133640 GAGGACAAAAGAAAAA-GGAAAATAAAGTGCGTCCTACTCTTT
1 GAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
* ** *
133682 GAGGACAAAAGACAAAAGAAGG-GAAGAAAGTGTGTCCTACTCTTT
1 GAGGACAAAAGA-AAAAG--GGAAAAGAAAGTACGTCCTACTCTCT
133727 GAGGAC
1 GAGGAC
133733 TGAAAAGTGC
Statistics
Matches: 79, Mismatches: 9, Indels: 7
0.83 0.09 0.07
Matches are distributed among these distances:
41 8 0.10
42 39 0.49
43 4 0.05
45 26 0.33
46 2 0.03
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.17
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
Found at i:133696 original size:49 final size:45
Alignment explanation
Indices: 133627--133732 Score: 146
Period size: 45 Copynumber: 2.4 Consensus size: 45
133617 AAACGAAATA
* * *
133627 CGTCCTACTCTCTGAGGACAAAAGA-AAAAG--GAAAATAAAGTG
1 CGTCCTACTCTTTGAGGACAAAAGACAAAAGAAGGAAAGAAAGTG
*
133669 CGTCCTACTCTTTGAGGACAAAAGACAAAAGAAGGGAAGAAAGTG
1 CGTCCTACTCTTTGAGGACAAAAGACAAAAGAAGGAAAGAAAGTG
*
133714 TGTCCTACTCTTTGAGGAC
1 CGTCCTACTCTTTGAGGAC
133733 TGAAAAGTGC
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
42 24 0.43
43 5 0.09
45 27 0.48
ACGTcount: A:0.39, C:0.18, G:0.24, T:0.20
Consensus pattern (45 bp):
CGTCCTACTCTTTGAGGACAAAAGACAAAAGAAGGAAAGAAAGTG
Found at i:133804 original size:61 final size:61
Alignment explanation
Indices: 133715--133944 Score: 297
Period size: 61 Copynumber: 3.8 Consensus size: 61
133705 AAGAAAGTGT
* *
133715 GTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGC
* * *
133776 GTCCTGCCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAA-AGAAA-GC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGA-AAAGGC
* * * *
133837 ATCCTGTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGC
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAGGC
* * *
133898 GTCCTGCTCTTTGAGGACTG-AAGGTGCCACCAGCTTGTGTTGGCTTT
1 GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT
133945 TAAAGGCATC
Statistics
Matches: 146, Mismatches: 18, Indels: 11
0.83 0.10 0.06
Matches are distributed among these distances:
59 4 0.03
60 26 0.18
61 109 0.75
62 7 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (61 bp):
GTCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGC
Found at i:133862 original size:122 final size:121
Alignment explanation
Indices: 133722--133944 Score: 367
Period size: 122 Copynumber: 1.8 Consensus size: 121
133712 TGTGTCCTAC
*
133722 TCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCCTGCCCT
1 TCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCCCT
133786 TTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTGT
65 TTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTGT
* * *
133844 TCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCTGCTCTT
1 TCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCCTT
* *
133909 TGAGGACTGAAGGTGCCACCAGCTTGTGTTGGCTTT
66 TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTT
133945 TAAAGGCATC
Statistics
Matches: 94, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
121 30 0.32
122 64 0.68
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (121 bp):
TCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCCTT
TGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTGT
Found at i:134103 original size:60 final size:60
Alignment explanation
Indices: 133979--134104 Score: 211
Period size: 60 Copynumber: 2.1 Consensus size: 60
133969 CAAAAAGACG
133979 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTA-GAAGTGCCACCAACTTGTGTGGGCTTTA
134040 AAAGGAGA-AGGCGTCCTGCTCTTTGAGGACT-GAAGGTGCCACCAACTTGTGTGGGCTTTA
1 AAAGGAGAGA-GCGTCCTGCTCTTTGAGGACTAGAA-GTGCCACCAACTTGTGTGGGCTTTA
134100 AAAGG
1 AAAGG
134105 CATCCTGCTC
Statistics
Matches: 63, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
59 3 0.05
60 31 0.49
61 29 0.46
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (60 bp):
AAAGGAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGTGCCACCAACTTGTGTGGGCTTTA
Found at i:134118 original size:154 final size:154
Alignment explanation
Indices: 133838--134257 Score: 716
Period size: 154 Copynumber: 2.7 Consensus size: 154
133828 AAAGAAAGCA
* **
133838 TCCTGTTCTTTGAGGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
* *
133903 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTTGGCTTTTAAAGGCATCCTGCTCTTTGAAG
66 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTG-AG
133968 G-CAAAAAGACGAAAGGAGAGAGCG
130 GACAAAAAGACGAAAGGAGAGAGCG
133992 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
*
134057 GCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
66 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
*
134122 ACAAAAAGGCGAAAGGAGAGAGCG
131 ACAAAAAGACGAAAGGAGAGAGCG
* *
134146 TCCTGCTCTTTAAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCT
1 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
* * *
134211 GCTCTTTGAGGACTGAAAGTGACACCAGCTTATGTGGGCTTTAAAAG
66 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAG
134258 AAAAAGGCAT
Statistics
Matches: 252, Mismatches: 13, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
153 3 0.01
154 249 0.99
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (154 bp):
TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
GCTCTTTGAGGACTGAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGG
ACAAAAAGACGAAAGGAGAGAGCG
Found at i:134212 original size:61 final size:60
Alignment explanation
Indices: 134143--134455 Score: 344
Period size: 61 Copynumber: 5.3 Consensus size: 60
134133 AAAGGAGAGA
* *
134143 GCGTCCTGCTCTTTAAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAG
1 GCGTCCTGCTCTTTGAGGACT-GGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * * * *
134204 GCATCCTGCTCTTTGAGGACTGAAAGTGACACCAGCTTATGTGGGCTTTAAAAGAAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * * * *
134264 GCATCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTGTGGGCTTTAAAAGAAAAAA
1 GCGTCCTGCTCTTTGAGGACTGGA-AGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* * *
134325 GCGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTT------AAAAG
1 GCGTCCTGCTCTTTGAGGACTGGA-AGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
* *
134380 GCGTCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAG
1 GCGTCCTGCTCTTTGAGGACTGGAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
134435 GCGTCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
134456 AAAAGGTGAA
Statistics
Matches: 225, Mismatches: 24, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
55 72 0.32
60 56 0.25
61 97 0.43
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (60 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
Found at i:134409 original size:55 final size:55
Alignment explanation
Indices: 134320--134463 Score: 216
Period size: 55 Copynumber: 2.6 Consensus size: 55
134310 CTTTAAAAGA
* * *
134320 AAAAAGCGTCCTGCTCTTTGAGGACTGGAGGGTGCCACCAACTCGTATGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTATGGGCTTT
* * *
134375 AAAAGGCGTCTTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTATGGGCTTT
* *
134430 GAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTG
1 AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTG
134464 AAAGGAGAGA
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
55 80 1.00
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (55 bp):
AAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTCGTATGGGCTTT
Found at i:135545 original size:1 final size:1
Alignment explanation
Indices: 135534--135577 Score: 52
Period size: 1 Copynumber: 44.0 Consensus size: 1
135524 CTTTTCTCTC
* * * *
135534 TTTTTTCTTTTTTTTTTTGTTTTTTTTTTGTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
135578 ATAAGATAAG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
1 35 1.00
ACGTcount: A:0.00, C:0.02, G:0.07, T:0.91
Consensus pattern (1 bp):
T
Found at i:135556 original size:18 final size:18
Alignment explanation
Indices: 135534--135577 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
135524 CTTTTCTCTC
*
135534 TTTTTTCTTTTTTTTTTTG
1 TTTTTT-TTTTGTTTTTTG
135553 TTTTTTTTTTGTTTTTTG
1 TTTTTTTTTTGTTTTTTG
135571 TTTTTTT
1 TTTTTTT
135578 ATAAGATAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.00, C:0.02, G:0.07, T:0.91
Consensus pattern (18 bp):
TTTTTTTTTTGTTTTTTG
Found at i:145894 original size:4 final size:4
Alignment explanation
Indices: 145885--145909 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
145875 AAAACAAAAC
145885 AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT A
145910 CCTCAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:146657 original size:62 final size:62
Alignment explanation
Indices: 146586--146730 Score: 290
Period size: 62 Copynumber: 2.3 Consensus size: 62
146576 CCCTATGCAA
146586 ATGCAGAGGGTTACTCACGAAAGACATAGGTAATTTACATCTCGAAAGGTATTGCCATGCCT
1 ATGCAGAGGGTTACTCACGAAAGACATAGGTAATTTACATCTCGAAAGGTATTGCCATGCCT
146648 ATGCAGAGGGTTACTCACGAAAGACATAGGTAATTTACATCTCGAAAGGTATTGCCATGCCT
1 ATGCAGAGGGTTACTCACGAAAGACATAGGTAATTTACATCTCGAAAGGTATTGCCATGCCT
146710 ATGCAGAGGGTTACTCACGAA
1 ATGCAGAGGGTTACTCACGAA
146731 GGCGGATAGC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 83 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.25
Consensus pattern (62 bp):
ATGCAGAGGGTTACTCACGAAAGACATAGGTAATTTACATCTCGAAAGGTATTGCCATGCCT
Found at i:148149 original size:79 final size:77
Alignment explanation
Indices: 148049--148298 Score: 288
Period size: 79 Copynumber: 3.2 Consensus size: 77
148039 AATAATGGGG
* * *
148049 TTGGAGTATCCCCTTCAAAATAACGGGGTTGGAGTATCCACGATTGTGAAAAATCCATGATTTCG
1 TTGGAGTATCCCC-TCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATACAT-ATTTAG
*
148114 AAATAAAGTCGAGA
64 AAATAAAATCGAGA
* * * * *
148128 TTGGAGTATCTCCTCGAAAATAACGGGGTTGGACTATCCCCGACTATAAAAAATTGACAT-TTTA
1 TTGGAGTATCCCCTC-AAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAA-T-ACATATTTA
* *
148192 GAAATAAAACCGGGA
63 GAAATAAAATCGAGA
** *
148207 TTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTGA
1 TTGGAGTATCCCCTCA-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATACATATTTAG-
148272 AAATAAAATCGA-A
64 AAATAAAATCGAGA
148285 GTTGGAGTATCCCC
1 -TTGGAGTATCCCC
148299 GATTATGGAA
Statistics
Matches: 143, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
77 2 0.01
78 9 0.06
79 128 0.90
80 1 0.01
81 3 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (77 bp):
TTGGAGTATCCCCTCAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATACATATTTAGAA
ATAAAATCGAGA
Found at i:148297 original size:51 final size:50
Alignment explanation
Indices: 148234--148412 Score: 191
Period size: 51 Copynumber: 3.5 Consensus size: 50
148224 AAATAACGGG
* *
148234 GTTGGAGTATCCCCGATTGTGAAAAATTGATATTTTGAAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAATCG-A
* * *
148285 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTT-AGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGA-AAATAAAATC-GA
* * * * * * *
148336 GTTAGAGTATCCCTGATTAAGAAAAATTGATGTTTTGGAAATGAAACCGG
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAATCGA
*
148386 GATTGGAGTATCCCCGA-GATGAAAAAT
1 G-TTGGAGTATCCCCGATTATGAAAAAT
148413 CTAGCAATTT
Statistics
Matches: 105, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
50 11 0.10
51 93 0.89
52 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (50 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTGAAAATAAAATCGA
Found at i:150730 original size:20 final size:20
Alignment explanation
Indices: 150705--150759 Score: 92
Period size: 20 Copynumber: 2.8 Consensus size: 20
150695 AAAATGCTTG
*
150705 AATGTATCGATACATTGTAA
1 AATGTATCGATACATTGCAA
*
150725 AATGTATCGATACAATGCAA
1 AATGTATCGATACATTGCAA
150745 AATGTATCGATACAT
1 AATGTATCGATACAT
150760 CTGGGTAAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGCAA
Found at i:151727 original size:42 final size:42
Alignment explanation
Indices: 151681--151774 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
151671 TCGTTTTTCG
* *
151681 AGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTCCTTA
1 AGGACAAAAGAAAAA-GGAAAAGAAAGTACGTCCTACTCCTTA
* * * *
151723 AGGACAAAAGAAAAAGGAAAATAAAGTACGTCCTGCTCTTTG
1 AGGACAAAAGAAAAAGGAAAAGAAAGTACGTCCTACTCCTTA
151765 AGGACAAAAG
1 AGGACAAAAG
151775 TGAAAAGAAG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 8 0.18
42 37 0.82
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.15
Consensus pattern (42 bp):
AGGACAAAAGAAAAAGGAAAAGAAAGTACGTCCTACTCCTTA
Found at i:152458 original size:42 final size:42
Alignment explanation
Indices: 152384--152477 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
152374 TCGTTTTTCG
* *
152384 AGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACT-TCTTA
1 AGGACAAAAGAAAAAGGGAAAAGAAATACGTCCTACTCT-TTA
* * *
152426 AGGACAAAAGAAAAA-GGAAAATAAAGTGCGTCCTACTCTTTG
1 AGGACAAAAGAAAAAGGGAAAAGAAA-TACGTCCTACTCTTTA
152468 AGGACAAAAG
1 AGGACAAAAG
152478 TGAAAAGAAG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 8 0.18
42 36 0.80
43 1 0.02
ACGTcount: A:0.47, C:0.15, G:0.22, T:0.16
Consensus pattern (42 bp):
AGGACAAAAGAAAAAGGGAAAAGAAATACGTCCTACTCTTTA
Found at i:153147 original size:42 final size:42
Alignment explanation
Indices: 153088--153188 Score: 123
Period size: 42 Copynumber: 2.4 Consensus size: 42
153078 CTCGTTTTTC
* *
153088 GAGGACAAAGGAAAAAGGGAAACGAAA-TACATCCTACTCTCT
1 GAGGACAAAAGAAAAA-GGAAAAGAAAGTACATCCTACTCTCT
* * * *
153130 GAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTACTCTTT
1 GAGGACAAAAGAAAAAGGAAAAGAAAGTACATCCTACTCTCT
153172 GAGGACAAAAGAGAAAA
1 GAGGACAAAAGA-AAAA
153189 TAACGGAAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
41 8 0.16
42 39 0.76
43 4 0.08
ACGTcount: A:0.49, C:0.15, G:0.23, T:0.14
Consensus pattern (42 bp):
GAGGACAAAAGAAAAAGGAAAAGAAAGTACATCCTACTCTCT
Found at i:153877 original size:42 final size:42
Alignment explanation
Indices: 153796--153890 Score: 118
Period size: 42 Copynumber: 2.2 Consensus size: 42
153786 TTTCGAGGGT
*
153796 AAAAGAAAAAGGGAAACAAAATACGTCCTACTCTCTGAGGAC
1 AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
* * * * * *
153838 AAAAGAAAAAGGAAAATAAAGTGCGTCGTGCTCTTTGAGGAC
1 AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
153880 AAAAGAGAAAA
1 AAAAGA-AAAA
153891 TAACGGAAGG
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 41 0.91
43 4 0.09
ACGTcount: A:0.49, C:0.14, G:0.22, T:0.15
Consensus pattern (42 bp):
AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
Found at i:154000 original size:702 final size:703
Alignment explanation
Indices: 151129--165818 Score: 23520
Period size: 703 Copynumber: 20.9 Consensus size: 703
151119 TGAGCACAAT
*
151129 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* *
151194 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGTCGTTTCTGAGTATCAGGAATAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * *
151259 ACAAATAGATACCATTTTGTCCGCGGCCGCTTGCGGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
151324 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGC-AGTTCCGATGGAAAAATGAGTTTGTA
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGA-TTCCGATGGAAAAATGAGTTTGT-
*
151388 AGGG-TTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCACCTTAGATAGGTGTTGG
259 AGGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGG
* * *
151452 TTACTGTAGGCTTTAGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTAGGTGCTGCCAATTTGT
324 TTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGT
151517 GCAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGA
389 GCAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGA
* * *
151582 ATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGGGAAGAAAAAGAAAATGTCCTACTTCTTGA
454 ATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGA
* *
151647 GGACAAAGTGAAAAAGAGTACGTCTCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
519 GGACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
* * *
151712 CCTACTC-CTTAAGGACAAAAGAAAAAGGAAAATAAAGTACGTCCTGCTCTTTGAGGACAAAAGT
584 CCTACTCTC-TGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGA
* *
151776 GAAAAGAAGGGAAGGAAGTGCGTCCTACTCTTTGAGGATTGAAAAGTGCCACCAAC
648 GAAAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
151832 TCGTCCCCACATATGTCCAATCCTCCACCAACTAACTAGGCTTCAAGTTTTTGAAAATTGGCTCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * * * *
151897 GCCAAAATGAAATATCTACAGCTGCCCCTCTTTGGCCATTTCTGAGTATCAGGAATAACGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
151962 ATAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
*
152027 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCAGCTG-TTCCGATGGAAAAATGAGTTTGTA
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGC-GATTCCGATGGAAAAATGAGTTTGTA
152091 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
260 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
*
152156 TACTGTAGGCTTTGGAAAGGTTTGCCACCATCTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
325 TACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
152221 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
390 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
* *
152286 TGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGGGAAGAAAAAGAAAATGTCCTGCTTCTTGAG
455 TGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
** * *
152351 GACAAAGTGAAAAAGAACACGTCTCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTC
520 GACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTC
* * *
152416 CTACT-TCTTAAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGTG
585 CTACTCTC-TGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAG
* *
152480 AAAAGAAGGGAAGGAAGTGCGTCCTACTCTTTGAAGACTGAAAAGTGCCACCAAC
649 AAAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
152535 TCGTCCCCACATATGTCCAATTCTCCACCAACTAACTAGGCTTCAAGTT-TTCGAAAATTGGCTC
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTT-GAAAATTGGCCC
* * * *
152599 GCACAAAAAGTAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAACGCAAA
65 GGACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAA
* * * * * * *
152664 GATAAATTGGCTCCATTTTGCCCACGACCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTT
130 GACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTT
* *
152729 CGATTAAAGCTTCGCCATGATGAAGAGTGTATTGGTGGCGGTTCCGATGGAAAAATGAGTTTGTA
195 CGATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTA
**
152794 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTTCTAAGGCTTGACCTTATTAGATAGGTGTTGG
260 GGGTTTGTCCTCCCTACTAGGTTTTGAGA-TTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGG
* *
152859 TTACTGTAGGCTTTGGAAATGTTTGCCACCATCTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGT
324 TTACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGT
* *
152924 GCAGACTTCAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGACA
389 GCAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGA
* *
152989 ATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGGGAAGAAAAACAAAGTGTCCTGCTTCTTGA
454 ATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGA
* * * *
153054 GGACAAAGTGAATAAAAAGTACGTCTCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACA
519 GGACAAAGTGAA-AAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACG
*
153119 TCCTACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGA
583 TCCTACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGA
* * * * *
153184 GAAAATAACGGAAGGAAGTGTGTCCTACTCTTTGGGGACTGATAAGAGCCACCAAC
648 GAAAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
153240 TCATCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGATTCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * **
153305 AACAAAATGAAGTGTCTGCAGCTGCCCCTCTTTGGCCGTTTTTGAGTATTGGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
** * *
153370 ACAAATAGACACCATTTTGTCCATGGCCGCATGCTGTGAGCTTGGAGTGATTAAAAAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* *
153435 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGACGATTCCGATGGAAAAATGAGTGTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
153500 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCGTGACCTCCTTAGATAAGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* * *
153565 ACTGTAGGCTTTGGAAAAGTTTGCCACCAACTTGTGTGGGC-TTTTAGGTGCTCCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * * *
153629 AGATTTTAGGAGGGGAAAGAAATTGAAGGGGTGCCCCACTTTTTGAGGACAAAGGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* *
153694 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGTGAAGAAAAAGAAAGTGTCCTGCTTCTTGGGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
** * ** * *
153759 ACAAAGTGAAAAAGAGTACAACCCGTTTTTCGAGGGTAAAAGAAAAAGGGAAACAAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
153824 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCGTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* * * * *
153889 AATAACGGAAGGAAGTGTGTCCTACTCTTTGGGGACTGATAAGAGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
153942 TCATCCCCACATATGTCCAATCCTCCGCCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCTG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* ** * * * * *
154007 GATAAAATGAAGCATCTACAACTGCTCCTCTTTGGCCGTTTTTGAGTATCAAGAATAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* *
154072 ACAAATAGACACAATTTTGCCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * * *
154137 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGTGGCGATTCTGATGGAGAAATCAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
154202 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGTTTGACCTCCTGAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
** * *
154267 ACTGTAGGCAATGGAAAGGTTTGCCACCAACTTATGTGGGCTTTTTGGGCGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
154332 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* * * *
154397 GAAATAAGTCTTGCTCCTTGAGGGCAAAGGGAGAGAAGAAAAAAAAAGTGTCCAGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
** * *
154462 ACAAAGTGAAAAAGAGTACGTCCTGTTTTTTGAGG---ATGGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* * * *
154524 TACTATCTGAGGACAAAAGAAAATGGAAAATAAAGTGCGTCTTGCTTTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
** * * * * *
154589 AA-AAAAGAAGGTAGTGTGTCTTACTATTTGAGGACTGAAAAATGCCACTAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
*
154641 TTGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * *
154706 GACAAAATGAAGTGTCTACAGCTACCCTTCTTTGGTCGTTTCTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * *
154771 ACAAATAAACACCATTTTGTCTGCGGCCGCATGCTGTGACCTTGGAGTGAATAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* *
154836 GATTAAAGCTTCGCCATGATGAAGAATGTATTGGCGACGATTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
154901 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* *
154966 ACTGTAGTCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGTTGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * *
155031 AGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAAGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
155096 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* ** *
155161 ACAAAGTGAAAAAGAGTACATCCCATTTTTCGAGGGTAAAAGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
155226 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAATGCGTCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* * * *
155291 AAGAAGGGAAAGAAGTGTGTCCTAGTCTCTGAGGACAGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
155344 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAGGTTGTCGAAAATTGACCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* ** * * *
155409 GACAAAAAGAAGCATCTACAACTGCCCCTCTTTGGCCGTTTTTGAGTATCAGGAATAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* *
155474 ACAAATAGACACAATTTTGCCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * *
155539 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGTGGCGATTCTGATGGAAAAATCAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* * *
155604 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGTTTGACCGCCTGAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* ** * * * *
155669 ACTGGAGGCAATGGAAAGCTTTGCCACGAACTTATGTGGGCTTTTTGGGCGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
**
155734 AGACTTTAGGAGGGGAAAGATGTGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* * *
155799 GAAATAAGTCTTGCTCCTTGAGGGCAAAGGGAGAGAAGAAAAAGAAAGTGTCCAGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
155864 ACAAAGTGAAAAAGAGTACGTCCTATTTTTTGGGGAC---GGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* * * *
155926 TACTATCTGAGGACAAAAGAAAATGGAAAATAAAGTGCGTCTTGCTTTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
** ** * *
155991 AA-AAAAGAAGGTTGTGTGTCCTACTCTTTGAGGACTGAAAAATGCCACTAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
156043 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * *
156108 AACAAAATGAAGTGTCTACAGCTACCCTTCTTTGGTCGTTTCTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
156173 ACAAATAAACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
*
156238 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGACGATTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
*
156303 GGTTTCTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
*
156368 ACTGTAGGCTTTAGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* *
156433 AGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
*
156498 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCAGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
** * ** * *
156563 ACAAATGTGAAAAAGAGTACGTCCTGTTTTTTGAGGGTAAAAGAAAAAGGGAAACGAAATTCGTC
521 ACAAA-GTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTC
156628 CTACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGA
585 CTACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGA
*
156693 AAAGAAGGGAAGGAAGAGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
650 AAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
156747 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * * *
156812 GACAAAATGAAGGGTCTACAGCTACCCTTCTTTGGTCGTTTTTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
156877 ACAAATAGACACCATTTTGTCTGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* *
156942 GATTAAAGCTTCGCCATGATAAAGAGTGTATTGGCGACGATTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
157007 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* * *
157072 ACTGTAGTCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACCTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * *
157137 AGACTTTAGGAGGGTAAAGAGATTGAA-GGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* * * * *
157201 GAAATAGGTCCTGCTCCTTGAGGACAAACGGAGAGACGAAAAAGAAAGTGTCTTACTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
157266 ACAAAGTGAAAAAGAGTACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* * * * *
157331 TACTCTCTGAGGATAGAAGAAAAAGGAAAATAAAGTGCGTCCTGCTATTTGTGAACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* * * *
157396 AAGAGGGGAAGGAAGTGTGTCTTACTCATTGGGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * * * *
157449 TCGTCCCCACATATGTCCAATCCTCTACCAACTAGCTAGGCTTCAGGTTGTCGAAAATTGACCCA
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * * *
157514 GAGAAAAAGAAGTGTCTACAGCTGCCCCTCTTCGGCCGTTTTTGAGTATCAGGAACAGCACAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * * *
157579 ATAAATAGACACCATTTTCTCCACGACCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * *
157644 GATTAAAGCTTCGCCATGATGAAGAGTGTAGTGGCGGCGGTTTCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
*
157709 GGTTTGTCCTCCCTACTTGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* *
157774 ACTGTAGGCTTTGGAAAAGTTTGCCACCAACTTGTGTGGGC-TTTTAGGTGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* *
157838 AGATTTTAGGAGGGGAAAGAAATTGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
*
157903 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGGGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
157968 ACAAAGGGAAAAAGGGTACGTCCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* *
158033 TACTCTTTGAGGACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
158098 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
*
158151 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCA
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * *
158216 GACAAAATGAAGTGTCCACAGCTGCCCCTCTTTGGCCGTTTCTAAGTATCAGAAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * * * *
158281 AAAAATAAACACCATTTTGTCCGCGACCGCATGCTGTGACCTTTGAGTAATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * * * *
158346 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGACGGTTCTGAGGGAAAAATTAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
158411 GGTTTGTCCTCCCAACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTC
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* *
158476 ATTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTACCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* *
158541 AGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
*
158606 GAAATAGGTCTTACTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * ** *
158671 ACAAAGTGAAAAAGAGTACATCCTATTTTTCGAGGGTAAAAGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
158736 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* *
158801 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGCAC-AAGAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGA-AAAGTGCCACCAAC
** *
158854 TCGTCCCCACATATGTCCAATCCTCTGCCAACAAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* *** * * * *
158919 GACAAAATAAAACATCTACAACTACCCCTCTTTGGCCGTTTTTGAGTATCAGGAATAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
** *
158984 ACAAATAGACAGAATTTTGCCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * *
159049 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGTGGCGATTCTGATGGAAAAATCAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* * *
159114 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGTTTGACCTCCTAAGATAGGTATTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* * *
159179 ACTGTAGGCATTGGAAAGGTTTGCCACCAACTTATGTGGGCTTTTTGGGCGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
*
159244 AGACTTTAGGAGGGGAAAGAAATTGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* *
159309 GAAATAAGTCTTGCTCCTTGAAGG-CAAAGGGAGAGAAGAAAAAGAAAGTGTCCAGCTTCTTGAG
456 GAAATAGGTCTTGCTCCTTG-AGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
** * *
159373 GACAAAGTGAAAAAGAGTACGTCCTGTTTTTTGAGGAC---GAAAAAAGGGAAACGAAATACGTC
520 GACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTC
* * * * * *
159435 CTACTATCTGAGGACAAAAGAAAATGGAAAATAAAGTGCATCTTGCTTTTTGAGGACAAAAGGGA
585 CTACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGA
** * * * *
159500 AAA-AAAAGAAGGTAGTGCGTCCTACTCTTTGAGGACTGAAAAATGCCACTAAC
650 AAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
*
159553 TCGTCCCCACATATGTCCGATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * ** *
159618 AACAAAATGAAGTGTCTACAGCTACCCTTCTTTGTTCGTTACTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
159683 ACAAATAAACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* **
159748 GATAAAAGCTTCGCCATGATGAAGAGTGTATTGGCGATGATTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
159813 GGTTTGTCCTTCCTACTAGCTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
*
159878 ACTGTAGTCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* *
159943 AGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* *
160008 GAAATAGGTCTTGCTCTTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGATG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* ** *
160073 ACAAAGTGAAAAAGAGTACATCCCATTTTTCGAGGGTAAAAGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
160138 TACTCTCTGAGGGCAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* *
160203 AAGAAAGGAAGGAAGTGTGTCCTATTCTTTGAGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* ** *
160256 TCGTCCCCACATATGTCCAATCTTCCACCAACTAGCTAGGAATCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * *
160321 GATAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTTTGAGTATCAGGAACAACGCAAAA
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* *
160386 ACAAATAGACACCATTTTGTCCACGGCCGCATGCTATGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
*
160451 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAACGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
160516 GGTTTGTCCTCCTTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* *
160581 ACTGTAGGCTTTGGAAAGGGTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGT
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * * *
160646 AGACTTTAGGAGGGGAAAAAAATTGATGGGGTGTCCCACTTTTTAAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* * * *
160711 GAAATAGGTCCTGCTCCTTGAGGACAAAGGGAGAGACGAAAAAGAAAGTGTCTTACTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
160776 ACAAAGTGAAAAAGAGTACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* * * * *
160841 TACTCTCTGAGGACAGAAGAAAAAGGAAAATAAAATGCGTCCTGCTATTTGTGAACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* * *
160906 AAGAGGGGAAGGAAGTGTGTCTTACTCTTTGGGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
160959 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAGGTTGTCGAAAATTGACCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * *
161024 GACAAAAAGAAGTGTCTACAGCTGCCCCTCTTTGGCCATTTTTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * * *
161089 ATAAATAGACACCATTTTCTCCACGACCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * *
161154 GATTAAAGCTTCACCATGATGAAGAGTGTATTGGTGGC-AGTTCCGATGGAAAAATGAGTTCGTA
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGA-TTCCGATGGAAAAATGAGTTTGTA
*
161218 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCCCCTTAGATAGGTGTTGGT
260 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
* *
161283 TACTGTAGGCTTTGGAAATGTTTGCCACCAACTTGTGTGGGCTTTTTTGGTGCTGCCAACTTGTG
325 TACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
161348 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
390 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
* *
161413 TGAAATAGGTCTTGCTCATTGAGGACAAAGGGAGGGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
455 TGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
* *
161478 GACAAAGTGAAAAA-AGGTACGTCTCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
520 GACAAAGTGAAAAAGA-GTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
* *
161542 CCTACTCTCTGAGGATAAAAGAAAAAGGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGA
584 CCTACTCTCTGAGGACAAAAGAAAAAGG-AAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGA
* * *
161607 GAAAAGAACGGAAGGAAGTGTGTCGTACTCTTTGGGGACTGAAAAGTGCCACCAAC
648 GAAAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
161663 TCGTCCCCACATATGTTCAATCCTCCACCAACTAGCTAGGATTCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * ** ***
161728 GACAAAATGAAGTGTTTGCAGCTGCCCCTCTTTGGCTGTTTCTGAGTATTGGGAACAATACAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
161793 ACAAATAGACACCATTTTGTCCACGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
** *
161858 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
*
161923 GGTTTGTCCTCCCTACTTGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* * *
161988 ACTGTAGGCTTTGGAAAAGTTTGCCACCAACTTGTGTGGGC-TTTTAGGTGCTGCCAACTTGTGT
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * *
162052 AGATTTTAGGATGGGAAAGAAATTGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
*
162117 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAAAAAGTGTCCTGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
162182 ACAAAGTGAAAAAGAGTACGCCCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
162247 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
162312 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
162365 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
*
162430 GACAAAATGAAGTGTCCACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
162495 ACAAATAAACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* **
162560 GATAAAAGCTTCGCCATGATGAAGAGTGTATTGGCGATGATTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
162625 GGTTTGTCCTTCCTACTAGCTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
*
162690 ACTGTAGTCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* *
162755 AGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* *
162820 GAAATAGGTCTTGCTCTTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGATG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* ** *
162885 ACAAAGTGAAAAAGAGTACATCCCATTTTTCGAGGGTAAAAGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
162950 TACTCTCTGAGGGCAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* *
163015 AAGAAAGGAAGGAAGTGTGTCCTATTCTTTGAGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* ** *
163068 TCGTCCCCACATATGTCCAATCTTCCACCAACTAGCTAGGAATCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * *
163133 GATAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTTTGAGTATCAGGAACAACGCAAAA
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* *
163198 ACAAATAGACACCATTTTGTCCACGGCCGCATGCTATGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
*
163263 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAACGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
* *
163328 GGTTTGTCCTCCTTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* *
163393 ACTGTAGGCTTTGGAAAGGGTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGT
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * * *
163458 AGACTTTAGGAGGGGAAAAAAATTGATGGGGTGTCCCACTTTTTAAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
* * * *
163523 GAAATAGGTCCTGCTCCTTGAGGACAAAGGGAGAGACGAAAAAGAAAGTGTCTTACTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
163588 ACAAAGTGAAAAAGAGTACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
* * * * *
163653 TACTCTCTGAGGACAGAAGAAAAAGGAAAATAAAATGCGTCCTGCTATTTGTGAACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
* * *
163718 AAGAGGGGAAGGAAGTGTGTCTTACTCTTTGGGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
163771 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAGGTTGTCGAAAATTGACCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * *
163836 GACAAAAAGAAGTGTCTACAGCTGCCCCTCTTTGGCCATTTTTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * * *
163901 ATAAATAGACACCATTTTCTCCACGACCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * *
163966 GATTAAAGCTTCACCATGATGAAGAGTGTATTGGTGGC-AGTTCCGATGGAAAAATGAGTTCGTA
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGA-TTCCGATGGAAAAATGAGTTTGTA
*
164030 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCCCCTTAGATAGGTGTTGGT
260 GGGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
* *
164095 TACTGTAGGCTTTGGAAATGTTTGCCACCAACTTGTGTGGGCTTTTTTGGTGCTGCCAACTTGTG
325 TACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
164160 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
390 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
* *
164225 TGAAATAGGTCTTGCTCATTGAGGACAAAGGGAGGGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
455 TGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
* *
164290 GACAAAGTGAAAAA-AGGTACGTCTCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
520 GACAAAGTGAAAAAGA-GTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGT
* *
164354 CCTACTCTCTGAGGATAAAAGAAAAAGGAAAAATAAAGTGCGTCCTACTCTTTGAGGACAAAAGA
584 CCTACTCTCTGAGGACAAAAGAAAAAGG-AAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGA
* * *
164419 GAAAAGAACGGAAGGAAGTGTGTCGTACTCTTTGGGGACTGAAAAGTGCCACCAAC
648 GAAAAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
* * *
164475 TCGTCCCCACATATGTTCAATCCTCCACCAACTAGCTAGGATTCAAGTTGTCGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
* * * ** ***
164540 GACAAAATGAAGTGTTTGCAGCTGCCCCTCTTTGGCTGTTTCTGAGTATTGGGAACAATACAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
*
164605 ACAAATAGACACCATTTTGTCCACGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
** *
164670 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCAACGGTTCCGATGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
*
164735 GGTTTGTCCTCCCTACTTGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
261 GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
* * *
164800 ACTGTAGGCTTTGGAAAAGTTTGCCACCAACTTGTGTGGGC-TTTTAGGTGCTGCCAACTTGTGT
326 ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
* * *
164864 AGATTTTAGGATGGGAAAGAAATTGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
391 AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
*
164929 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAAAAAGTGTCCTGCTTCTTGAGG
456 GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
* * *
164994 ACAAAGTGAAAAAGAGTACGCCCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCC
521 ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
*
165059 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAGAA
586 TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
165124 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
651 AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
165177 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
1 TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
*
165242 GACAAAATGAAGTGTCCACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
66 GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
* * * *
165307 ACAAATAAACACCATTTTGTCCGCGGCCGCATGCTGTGACTTTTGAGTAATTAAACAAGAGGTTC
131 ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
* * * *
165372 GATTAAAGCTTCGCCATGATGAAGAGTGTATCGGCGGTGGTTCCGAGGGAAAAATGAGTTTGTAG
196 GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
165437 GGTTTGTCCT-CCTAACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
261 GGTTTGTCCTCCCT-ACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGT
* *
165501 CACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTACCAACTTGTG
325 TACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTG
* *
165566 CAGATTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAAAA
390 CAGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAA
*
165631 TTAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
455 TGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAG
* * * * * * *
165696 GACAATGTGAAAAAGAGTACATCCCGTTTTTCAAGGGCAAA-AAAAAAAGGAAACGAAATACGTC
520 GACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTC
*
165760 CTACTCTCTGAGGACAAAAAGAAAAAGGAAAATAAAGTGTGTCCTGCTCTTTGAGGACA
585 CTACTCTCTGAGGAC-AAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACA
165819 GAAAAGTGCC
Statistics
Matches: 12912, Mismatches: 1031, Indels: 88
0.92 0.07 0.01
Matches are distributed among these distances:
698 3 0.00
699 1622 0.13
700 286 0.02
701 47 0.00
702 2663 0.21
703 6271 0.49
704 1601 0.12
705 416 0.03
706 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.25
Consensus pattern (703 bp):
TCGTCCCCACATATGTCCAATCCTCCACCAACTAGCTAGGCTTCAAGTTGTTGAAAATTGGCCCG
GACAAAATGAAGTGTCTACAGCTGCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAG
ACAAATAGACACCATTTTGTCCGCGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTC
GATTAAAGCTTCGCCATGATGAAGAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAG
GGTTTGTCCTCCCTACTAGGTTTTGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTT
ACTGTAGGCTTTGGAAAGGTTTGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGC
AGACTTTAGGAGGGGAAAGAAATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAAT
GAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGG
ACAAAGTGAAAAAGAGTACGTCCCATTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCC
TACTCTCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGACAAAAGAGAA
AAGAAGGGAAGGAAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAAC
Found at i:155267 original size:42 final size:42
Alignment explanation
Indices: 155198--155293 Score: 129
Period size: 42 Copynumber: 2.3 Consensus size: 42
155188 TTTCGAGGGT
* *
155198 AAAAGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGAC
1 AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
* * * *
155240 AAAAGAAAAAGGAAAATAAAATGCGTCCTGCTCTTTGAGGAC
1 AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
155282 AAAAGAGAAAAG
1 AAAAGA-AAAAG
155294 AAGGGAAAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
42 42 0.89
43 5 0.11
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (42 bp):
AAAAGAAAAAGGAAAACAAAATACGTCCTACTCTCTGAGGAC
Found at i:155327 original size:45 final size:42
Alignment explanation
Indices: 155198--155327 Score: 113
Period size: 42 Copynumber: 3.0 Consensus size: 42
155188 TTTCGAGGGT
* ** * *
155198 AAAAGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGAC
1 AAAAGAAAAAGGAAAATAAAATGCGTCCTAGTCTCTGAGGAC
*
155240 AAAAGAAAAAGGAAAATAAAATGCGTCCT-GCTCTTTGAGGAC
1 AAAAGAAAAAGGAAAATAAAATGCGTCCTAG-TCTCTGAGGAC
* *
155282 AAAAGAGAAAA-GAAGGGAA-AGAAGTGTGTCCTAGTCTCTGAGGAC
1 AAAAGA-AAAAGGAA---AATA-AAATGCGTCCTAGTCTCTGAGGAC
155327 A
1 A
155328 GAAAAGTGCC
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
42 44 0.61
43 4 0.06
44 1 0.01
45 22 0.31
46 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.25, T:0.16
Consensus pattern (42 bp):
AAAAGAAAAAGGAAAATAAAATGCGTCCTAGTCTCTGAGGAC
Found at i:156647 original size:42 final size:43
Alignment explanation
Indices: 156601--156696 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 43
156591 TTTTGAGGGT
* *
156601 AAAAGAAAAAGGGAAACGAAA-TTCGTCCTACTCTCTGAGGAC
1 AAAAGAAAAAGGGAAAAGAAAGTGCGTCCTACTCTCTGAGGAC
* * *
156643 AAAAGAAAAA-GGAAAATAAAGTGCGTCCTGCTCTTTGAGGAC
1 AAAAGAAAAAGGGAAAAGAAAGTGCGTCCTACTCTCTGAGGAC
156685 AAAAGAGAAAAG
1 AAAAGA-AAAAG
156697 AAGGGAAGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
41 8 0.17
42 34 0.74
43 4 0.09
ACGTcount: A:0.47, C:0.15, G:0.23, T:0.16
Consensus pattern (43 bp):
AAAAGAAAAAGGGAAAAGAAAGTGCGTCCTACTCTCTGAGGAC
Found at i:156725 original size:45 final size:42
Alignment explanation
Indices: 156592--156729 Score: 118
Period size: 42 Copynumber: 3.2 Consensus size: 42
156582 CGTCCTGTTT
** * **
156592 TTTGAGGGTAAAAGAAAAAGGGAAACGAAA-TTCGTCCTACTC
1 TTTGAGGACAAAAGAAAAA-GGAAAAGAAAGAGCGTCCTACTC
* * * *
156634 TCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTC
1 TTTGAGGACAAAAGAAAAAGGAAAAGAAAGAGCGTCCTACTC
* *
156676 TTTGAGGACAAAAGAGAAAA-GAAGGGAAGGAAGAGTGTCCTACTC
1 TTTGAGGACAAAAGA-AAAAGGAA---AAGAAAGAGCGTCCTACTC
156721 TTTGAGGAC
1 TTTGAGGAC
156730 TGAAAAGTGC
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 8 0.10
42 43 0.55
43 4 0.05
45 23 0.29
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.19
Consensus pattern (42 bp):
TTTGAGGACAAAAGAAAAAGGAAAAGAAAGAGCGTCCTACTC
Found at i:157373 original size:42 final size:42
Alignment explanation
Indices: 157282--157360 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
157272 TGAAAAAGAG
*
157282 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAA
1 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAAAGAAA
*
157324 TACGTCCTAC-TCTCTGAGGATAGAA-GAAAAA-GGAAAA
1 TACGTCCTACTTCTC-GAGGACA-AAGGAAAAAGGGAAAA
157361 TAAAGTGCGT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
41 9 0.27
42 22 0.67
43 2 0.06
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.16
Consensus pattern (42 bp):
TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAAAGAAA
Found at i:158016 original size:42 final size:40
Alignment explanation
Indices: 157965--158100 Score: 101
Period size: 42 Copynumber: 3.2 Consensus size: 40
157955 CTGCTTCTTG
* * * *
157965 AGGACAAAGGGAAAAAGGGTACGTCCCATTTTTTGAGGACAA
1 AGGAAAAAGGGAAAAA--ATACGTCCCACTCTTTGAGGACAA
*
158007 AGGAAAAAGGGAAACGAAATACGTCCTACTCTTTGAGGACAA
1 AGGAAAAAGGGAAA--AAATACGTCCCACTCTTTGAGGACAA
* * * * **
158049 AAGAAAAAGGAAAATAAAGTGCATCCTGCTCTTTGAGGACAA
1 AGGAAAAAGGGAAA-AAA-TACGTCCCACTCTTTGAGGACAA
*
158091 AAGAGAAAAG
1 AGGA-AAAAG
158101 AAGGGAAGGA
Statistics
Matches: 79, Mismatches: 11, Indels: 7
0.81 0.11 0.07
Matches are distributed among these distances:
41 3 0.04
42 69 0.87
43 5 0.06
44 2 0.03
ACGTcount: A:0.44, C:0.14, G:0.25, T:0.17
Consensus pattern (40 bp):
AGGAAAAAGGGAAAAAATACGTCCCACTCTTTGAGGACAA
Found at i:158088 original size:119 final size:116
Alignment explanation
Indices: 157870--158091 Score: 268
Period size: 119 Copynumber: 1.9 Consensus size: 116
157860 TTGAAGGGGT
* * * * *
157870 GTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGG
1 GTCCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATACGTCCTACTCCTTGAGGACAAA-GAG
* *
157935 GAGAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACAAAGGGAAAAAGGGTAC
65 AAAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACAAAGGGAAAAAGGGTAC
* * *
157987 GTCCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTTTGAGGACAAA-A
1 GTCCCACTTTTTGAGGACAAAGG-AAAAGAG-AACGAAATACGTCCTACTCCTTGAGGACAAAGA
* *
158051 GAAAAAGGAAAATAAAGTGCATCCTGC-TCTTTGAGGACAAA
64 GAAAAAGAAAAAGAAAGTG--TCCTGCTTC-TTGAGGACAAA
158092 AGAGAAAAGA
Statistics
Matches: 88, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
117 37 0.42
118 8 0.09
119 43 0.49
ACGTcount: A:0.39, C:0.15, G:0.26, T:0.20
Consensus pattern (116 bp):
GTCCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATACGTCCTACTCCTTGAGGACAAAGAGA
AAAAGAAAAAGAAAGTGTCCTGCTTCTTGAGGACAAAGGGAAAAAGGGTAC
Found at i:158129 original size:45 final size:42
Alignment explanation
Indices: 157996--158133 Score: 145
Period size: 42 Copynumber: 3.2 Consensus size: 42
157986 CGTCCCATTT
* * *
157996 TTTGAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTC
1 TTTGAGGACAAAAGAAAAA-GGAAAAGAAAGTGCGTCCTACTC
* * *
158038 TTTGAGGACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTC
1 TTTGAGGACAAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTC
* *
158080 TTTGAGGACAAAAGAGAAAA-GAAGGGAAGGAAGTGTGTCCTACTC
1 TTTGAGGACAAAAGA-AAAAGGAA---AAGAAAGTGCGTCCTACTC
158125 TTTGAGGAC
1 TTTGAGGAC
158134 TGAAAAGTGC
Statistics
Matches: 80, Mismatches: 11, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.10
42 45 0.56
43 4 0.05
45 23 0.29
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
TTTGAGGACAAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTC
Found at i:158829 original size:45 final size:42
Alignment explanation
Indices: 158708--158838 Score: 131
Period size: 42 Copynumber: 3.0 Consensus size: 42
158698 TTTCGAGGGT
* * *
158708 AAAAGAAAAAGGGAAACGAAA-TACGTCCTACTCTCTGAGGAC
1 AAAAGAAAAA-GGAAAAGAAAGTGCGTCCTACTCTTTGAGGAC
* *
158750 AAAAGAAAAAGGAAAATAAAGTGCGTCCTGCTCTTTGAGGAC
1 AAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTCTTTGAGGAC
* * *
158792 AAAAGAGAAAA-GAAGGGAAGGAAGTGTGTCCTACTCTTTGAGCAC
1 AAAAGA-AAAAGGAA---AAGAAAGTGCGTCCTACTCTTTGAGGAC
158837 AA
1 AA
158839 GAAAGTGCCA
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
41 8 0.11
42 37 0.50
43 4 0.05
45 25 0.34
ACGTcount: A:0.44, C:0.15, G:0.24, T:0.17
Consensus pattern (42 bp):
AAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTCTTTGAGGAC
Found at i:160163 original size:42 final size:43
Alignment explanation
Indices: 160104--160205 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
160094 CCCATTTTTC
* *
160104 GAGGGTAAAAGAAAAAGGGAAACGAAA-TACGTCCTACTCTCT
1 GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
* * * *
160146 GAGGGCAAAAGAAAAA-GGAAAATAAAGTGCGTCCTGCTCTTT
1 GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
*
160188 GAGGACAAAAGAGAAAAG
1 GAGGGCAAAAGA-AAAAG
160206 AAAGGAAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.16
42 38 0.76
43 4 0.08
ACGTcount: A:0.45, C:0.14, G:0.26, T:0.15
Consensus pattern (43 bp):
GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
Found at i:160882 original size:42 final size:42
Alignment explanation
Indices: 160792--160883 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
160782 TGAAAAAGAG
* *
160792 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAA
1 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGAAAACAAAA
*
160834 TACGTCCTAC-TCTCTGAGGACAGAA-GAAAAAGGAAAATAAAA
1 TACGTCCTACTTCTC-GAGGACA-AAGGAAAAAGGAAAACAAAA
*
160876 TGCGTCCT
1 TACGTCCT
160884 GCTATTTGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (42 bp):
TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGAAAACAAAA
Found at i:161556 original size:42 final size:43
Alignment explanation
Indices: 161510--161612 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
161500 CTCGTTTTTC
* * *
161510 GAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTCTCT
1 GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
* * * *
161552 GAGGATAAAAGAAAAAGGAAAAATAAAGTGCGTCCTACTCTTT
1 GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
161595 GAGGACAAAAGAGAAAAG
1 GAGGACAAAAGA-AAAAG
161613 AACGGAAGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 22 0.43
43 24 0.47
44 5 0.10
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.15
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
Found at i:162138 original size:40 final size:42
Alignment explanation
Indices: 162094--162193 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
162084 GTCCCACTTT
** * *
162094 TTGAGGACAAAGGAAAAG-AGAATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
* * *
162134 TTGAGGACAAAGGGAGAGAAGAAAAAAAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
162176 TTGAGGACAAAGTGAAAA
1 TTGAGGACAAAG-GAAAA
162194 AGAGTACGCC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 16 0.33
41 9 0.19
42 20 0.42
43 3 0.06
ACGTcount: A:0.43, C:0.11, G:0.28, T:0.18
Consensus pattern (42 bp):
TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
Found at i:162271 original size:42 final size:42
Alignment explanation
Indices: 162210--162347 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 42
162200 CGCCCCATTT
* * *
162210 TTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTACTC
1 TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTGTCCTACTC
* * *
162252 TCTGAGGACAAAAGAAAAA-GGAAAATAAA-GTGCATCCTGCTC
1 TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTG--TCCTACTC
* * *
162294 TTTGAGGACAAAAGAGAAAAGAAGGGAAGGAAGTGTGTCCTACTC
1 TTTGAGGACAAAAGA-AAAAG--GGAAAAGAAATGTGTCCTACTC
162339 TTTGAGGAC
1 TTTGAGGAC
162348 TGAAAAGTGC
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
40 2 0.03
41 8 0.10
42 38 0.49
43 4 0.05
45 16 0.21
46 6 0.08
47 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTGTCCTACTC
Found at i:162299 original size:119 final size:117
Alignment explanation
Indices: 162086--162305 Score: 268
Period size: 119 Copynumber: 1.9 Consensus size: 117
162076 GAAGGGGTGT
* * * *
162086 CCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGA
1 CCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATAGGTCCTACTCCTTGAGGACAAAGAGAGA
*
162151 GAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
66 AAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
* * *
162203 CCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTACT-CTCTGAGGACAAA-AG
1 CCCACTTTTTGAGGACAAAGG-AAAAGAG-AACGAAATAGGTCCTACTCCT-TGAGGACAAAGAG
* *
162266 A-AAAAGGAAAATAAAGTGCATCCTGC-TCTTTGAGGACAAA
63 AGAAAAGAAAAAAAAAGTG--TCCTGCTTC-TTGAGGACAAA
162306 AGAGAAAAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
117 34 0.39
118 12 0.14
119 41 0.47
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (117 bp):
CCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATAGGTCCTACTCCTTGAGGACAAAGAGAGA
AAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
Found at i:162975 original size:42 final size:43
Alignment explanation
Indices: 162916--163017 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
162906 CCCATTTTTC
* *
162916 GAGGGTAAAAGAAAAAGGGAAACGAAA-TACGTCCTACTCTCT
1 GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
* * * *
162958 GAGGGCAAAAGAAAAA-GGAAAATAAAGTGCGTCCTGCTCTTT
1 GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
*
163000 GAGGACAAAAGAGAAAAG
1 GAGGGCAAAAGA-AAAAG
163018 AAAGGAAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.16
42 38 0.76
43 4 0.08
ACGTcount: A:0.45, C:0.14, G:0.26, T:0.15
Consensus pattern (43 bp):
GAGGGCAAAAGAAAAAGGGAAAAGAAAGTACGTCCTACTCTCT
Found at i:163694 original size:42 final size:42
Alignment explanation
Indices: 163604--163695 Score: 116
Period size: 42 Copynumber: 2.2 Consensus size: 42
163594 TGAAAAAGAG
* *
163604 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGGAAACGAAA
1 TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGAAAACAAAA
*
163646 TACGTCCTAC-TCTCTGAGGACAGAA-GAAAAAGGAAAATAAAA
1 TACGTCCTACTTCTC-GAGGACA-AAGGAAAAAGGAAAACAAAA
*
163688 TGCGTCCT
1 TACGTCCT
163696 GCTATTTGTG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
41 4 0.09
42 38 0.86
43 2 0.05
ACGTcount: A:0.41, C:0.20, G:0.22, T:0.17
Consensus pattern (42 bp):
TACGTCCTACTTCTCGAGGACAAAGGAAAAAGGAAAACAAAA
Found at i:164368 original size:42 final size:43
Alignment explanation
Indices: 164322--164424 Score: 127
Period size: 43 Copynumber: 2.4 Consensus size: 43
164312 CTCGTTTTTC
* * *
164322 GAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTCTCT
1 GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
* * * *
164364 GAGGATAAAAGAAAAAGGAAAAATAAAGTGCGTCCTACTCTTT
1 GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
164407 GAGGACAAAAGAGAAAAG
1 GAGGACAAAAGA-AAAAG
164425 AACGGAAGGA
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 22 0.43
43 24 0.47
44 5 0.10
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.15
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAGGAAAAAGAAAGTACGTCCTACTCTCT
Found at i:164950 original size:40 final size:42
Alignment explanation
Indices: 164906--165005 Score: 114
Period size: 42 Copynumber: 2.4 Consensus size: 42
164896 GTCCCACTTT
** * *
164906 TTGAGGACAAAGGAAAAG-AGAATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
* * *
164946 TTGAGGACAAAGGGAGAGAAGAAAAAAAAAGTGTCCTGCTTC
1 TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
164988 TTGAGGACAAAGTGAAAA
1 TTGAGGACAAAG-GAAAA
165006 AGAGTACGCC
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
40 16 0.33
41 9 0.19
42 20 0.42
43 3 0.06
ACGTcount: A:0.43, C:0.11, G:0.28, T:0.18
Consensus pattern (42 bp):
TTGAGGACAAAGGAAAAGAAGAAAAAAAAAGTGTCCTGCTCC
Found at i:165083 original size:42 final size:42
Alignment explanation
Indices: 165022--165159 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 42
165012 CGCCCCATTT
* * *
165022 TTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTACTC
1 TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTGTCCTACTC
* * *
165064 TCTGAGGACAAAAGAAAAA-GGAAAATAAA-GTGCATCCTGCTC
1 TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTG--TCCTACTC
* * *
165106 TTTGAGGACAAAAGAGAAAAGAAGGGAAGGAAGTGTGTCCTACTC
1 TTTGAGGACAAAAGA-AAAAG--GGAAAAGAAATGTGTCCTACTC
165151 TTTGAGGAC
1 TTTGAGGAC
165160 TGAAAAGTGC
Statistics
Matches: 77, Mismatches: 12, Indels: 11
0.77 0.12 0.11
Matches are distributed among these distances:
40 2 0.03
41 8 0.10
42 38 0.49
43 4 0.05
45 16 0.21
46 6 0.08
47 3 0.04
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.19
Consensus pattern (42 bp):
TTTGAGGACAAAAGAAAAAGGGAAAAGAAATGTGTCCTACTC
Found at i:165111 original size:119 final size:117
Alignment explanation
Indices: 164898--165117 Score: 268
Period size: 119 Copynumber: 1.9 Consensus size: 117
164888 GAAGGGGTGT
* * * *
164898 CCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGACAAAGGGAGA
1 CCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATAGGTCCTACTCCTTGAGGACAAAGAGAGA
*
164963 GAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
66 AAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
* * *
165015 CCCATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTACT-CTCTGAGGACAAA-AG
1 CCCACTTTTTGAGGACAAAGG-AAAAGAG-AACGAAATAGGTCCTACTCCT-TGAGGACAAAGAG
* *
165078 A-AAAAGGAAAATAAAGTGCATCCTGC-TCTTTGAGGACAAA
63 AGAAAAGAAAAAAAAAGTG--TCCTGCTTC-TTGAGGACAAA
165118 AGAGAAAAGA
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
117 34 0.39
118 12 0.14
119 41 0.47
ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20
Consensus pattern (117 bp):
CCCACTTTTTGAGGACAAAGGAAAAGAGAACGAAATAGGTCCTACTCCTTGAGGACAAAGAGAGA
AAAGAAAAAAAAAGTGTCCTGCTTCTTGAGGACAAAGTGAAAAAGAGTACGC
Found at i:167523 original size:703 final size:703
Alignment explanation
Indices: 165794--170172 Score: 6923
Period size: 703 Copynumber: 6.3 Consensus size: 703
165784 AAGGAAAATA
* *
165794 AAGTGTGTCCTGCTCTTTGAGGACAGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * * ** *
165859 CCGCCAACTAGCTAGGCTTCAAGTTGTCGAAATTTAGCCCGGACAAAATGAAGCATCCACAAG-T
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTAC-AGCT
* * *
165923 GCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAAACAAATAGACACCATTTTATCCG
130 GCCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCA
*
165988 CGGTCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAA
195 CGGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAA
* * ** *
166053 GAGTGTATTGGTGGTGATTTTGATGGAAAAAATCAGTTTGTAGGGTTTGTCCTCCCTACTAGGTT
260 GAGTGTATTGGCGGCGATTCCGATGG-AAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTT
* * *
166118 TTGAGATTGTCTAAGGTTTGACCT-CTTGAGATAGGTGTTGGTTACTGTAGGCATTGGAAAGGTT
324 TTGAGATTTTCTAAGGCTTGACCTCCTT-AGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTT
* *
166182 TGCCACCAACTTATGTGGGCTTTTTGGGCGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAA
388 TGCCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAA
*
166247 ATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAAGTCTTGCTCCTTGA
453 ATGGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGA
*
166312 GGACAAAGGGAGAGAAGAAAAAGAAAGTGTCC-AGCTTCTTGAGGACAAAGTGAAAAGGAGTACG
518 GGACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTA-CTTCTTGAGGACAAAGTGAAAAAGAGTACG
* * * *
166376 TCCTGTTTTTCGAGGAC---GAAAAAAGGGAAACGAAATACGTCCTACTATCTGAGGACAAAATA
582 TCCCGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGA
* ** *
166438 AAAAGGAAAATAAAGTGCGTCTTGCTTTTTGAGGACAAAAGAGAAAA-AAAAGAAGC
647 AAAAGGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
* * *
166494 TAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACTAACTCGTCCCCACATATGTCCAATCTT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * ** *
166559 CCACCAATTAGCTACGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGTGGTGTCTACAGCTA
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
* * * **
166624 CCCTTCTTTGGTCGTTTCTGATTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCGT
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
* *
166689 GGCCGCATG-TCGTGACCTTGGAGTGATTAAACATGAGGTTTGATTAAAGCTTCGCCATGATGAA
196 GGCCGCATGCT-GTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAA
* *
166753 GAGTGTATTGGCGACGATTCCGATGGAAAAATGAGTTTCTAGGGTTTGTCCTCCCTACTAGGTTT
260 GAGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTT
166818 TGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTG
325 TGAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTG
* * * *
166883 CCACCAACTTGTGTGGGCTTTTTGGGTGTTGCCAACCTGTGCAGACTTTAGGAGGGTAAAGAGAT
390 CCACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAAT
166948 GGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGG
455 GGAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGG
167013 ACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCC
520 ACAAAGGGAGAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCC
* * *
167078 CGTTTTTCGAGGACAAAGGAAAAAGGGAGACAAAATACGTCCTACTTTCTGAGGACAAAAGAAAA
585 CGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAA
*
167143 AGGAAAGTAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
650 AGGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
* *
167197 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTTGTCCCCACATATGTCCAATCTT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * *
167262 CCGCCAACTAGCTAGGCTTCAAGTTGTCCAAAATTGGCCCGGATAAAATGAAGTGTCTACAGCTG
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
* * * *
167327 CCCCTCTTTGGCCGTTTTTGAGTATCAGGAATAGCACAAAAACAAATAGACACCATTTTGTCCAC
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
*
167392 GGCCGCATGCTATGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
196 GGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
*
167457 AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCTTACTAGGTTTT
261 AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
*
167522 GAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
326 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
* * *
167587 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACATGTGCAGACTTTAGGAGGGGAAACAAATT
391 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
* * *
167652 GATGGGGTGTCCCACTTTTTAAGGACAAAGGAAAAGAGAATGAAATAGGTCCTGCTCCTTGAGGA
456 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
* *
167717 CAAAGGGAGAGACGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCT
521 CAAAGGGAGAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCC
*** *
167782 ACATCTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAAA
586 GTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAAA
* * * * * *
167847 GGAAAATAAAGTGCATCCTGCTATTTGTGAACAAAAGAGAAAAGAGGGGAAAG
651 GGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
* *
167900 AAGTGTGTCTTACTCTTTGGGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * *
167965 CCACCAACTAGCTAGGCTTCAGGTTGTCGAAAATTGACCCGGACAAAAAGAAGTGTCTACAGCTG
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
* * * *
168030 CCCCTCTTTGGCCATTTTTGAGTATCAGGAACAGCGCAAAGATAAATAGACACCATTTTCTCCAC
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
*
168095 GACCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
196 GGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
* * *
168160 AGTGTATTGGTGGCGGTTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTATTAGGTTTT
261 AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
168225 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
326 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
*
168290 CACCATCTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
391 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
*
168355 GAAGAGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
456 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
* * * * * * * * *
168420 GAAAAGGA-AGGAAG-AAAAGAAAGTGTCCTGCTTTTTGAGGACATATTGAAAAAAAGTAAGTCT
521 CAAAGGGAGA-GAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCC
*
168483 CGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACATCCTACTCTCTGAGGACAAAAGAAAA
585 CGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAA
* * * *
168548 AGGAAAATAAAGTGTGTCCTACTCTTTGAGGACAAAAGAGAAAAGAACGGAAGG
650 AGGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
* * *
168602 AAGTGTGTCCTACTCTTTGGGGACTGACAAGTGCCACCAACTCGTCCCCACATATGTTCAATCCT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * **
168667 CCACCAACTAGCTAGGATTCAAGTTGTCGAAAATTGGCCCGGACAAAATTAAGTGTCTGTAGCTG
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
** *
168732 CCCCTCTTTGGCCGTTTCTGAGTATTGGGAACAACGCAAAGACAAATAGACACCATTTTGT----
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
*
168793 ---CGCATGCTGTGACCCTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
196 GGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
* *
168855 AGTATATTGGCGACGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
261 AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
* *
168920 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTGGGCTTTGGAAAAGTTTGC
326 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
* * *
168985 CACCAACTTGTGTGGGC-TTTTAGGTGCTGCCAACTTGTGCAGATTTTAGGAGGGGAAAGAAATT
391 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
169049 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
456 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
* * * *
169114 CGAAGGGATAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTATGCCCC
521 CAAAGGGAGAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCC
* *
169179 ATTTTTTGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAAA
586 GTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAAA
* *
169244 GGAAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
651 GGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
*
169297 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCTT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* * * *
169362 CCACCAACTAGCTAGGCTTCAAGTTGTCAAAAATTGGTCTGGATAAAATGAAGTGTCTACAGCTG
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
* * * *
169427 CCCGTCTTTGGCCGTTTTTGAGTATCAGGAATAGCGCAAAAACAAATAGACACCATTTTGTCCAC
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
* * *
169492 GGCCGCATGCTATGACCTTGGAGTGATTAAACAAGAGGTTCAATTAAAGCTTCGCCGTGATGAAG
196 GGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
* * * *
169557 ATTGTATTGGCAGCGATTCCGATGAAAAAATGAGTTTGTAGGGTTTGTCCTCCTTACTAGGTTTT
261 AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
*
169622 GAGATTTTCTAAGGCTTGACCTCCTTAGACAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
326 GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
*
169687 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTATGCAGACTTTAGGAGGGGAAAGAAATG
391 CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
*
169752 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAATTAGGTCTTGCTCCTTGAGGA
456 GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
* *
169817 CAAAGGGAGAGAAGAAAAAGAAAGTGTCC-AGCTTCTTAAGGACAAAGTGAAAAAGAGTATGTCC
521 CAAAGGGAGAGAAGAAAAAGAAAGTGTCCTA-CTTCTTGAGGACAAAGTGAAAAAGAGTACGTCC
* * * * *
169881 CGTTTTTCAAGGAC---CGAAAAAGGGAAACGAAATACGTCCTACTATCTAAGGGCAAAAGAAAA
585 CGTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAA
* * **
169943 AGGAAAATAAAATGCGTCTTGCTTTTTGAGGACAAAAGAGAAAA-AAAAGAAGG
650 AGGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
* *
169996 TAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACTAACTCGTCCCCACATATGTCCAATCCT
1 AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
* *
170061 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGACCCGGACAAAATGAAGTGTCTACAGCTA
66 CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
* * *
170126 CCCTTCCTTGGTCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAAT
131 CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAAT
170173 GTCCATTCCT
Statistics
Matches: 3379, Mismatches: 279, Indels: 43
0.91 0.08 0.01
Matches are distributed among these distances:
694 117 0.03
695 526 0.16
699 465 0.14
700 338 0.10
702 603 0.18
703 1329 0.39
704 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (703 bp):
AAGTGTGTCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTCCCCACATATGTCCAATCCT
CCACCAACTAGCTAGGCTTCAAGTTGTCGAAAATTGGCCCGGACAAAATGAAGTGTCTACAGCTG
CCCCTCTTTGGCCGTTTCTGAGTATCAGGAACAGCGCAAAGACAAATAGACACCATTTTGTCCAC
GGCCGCATGCTGTGACCTTGGAGTGATTAAACAAGAGGTTCGATTAAAGCTTCGCCATGATGAAG
AGTGTATTGGCGGCGATTCCGATGGAAAAATGAGTTTGTAGGGTTTGTCCTCCCTACTAGGTTTT
GAGATTTTCTAAGGCTTGACCTCCTTAGATAGGTGTTGGTTACTGTAGGCTTTGGAAAGGTTTGC
CACCAACTTGTGTGGGCTTTTTGGGTGCTGCCAACTTGTGCAGACTTTAGGAGGGGAAAGAAATG
GAAGGGGTGTCCCACTTTTTGAGGACAAAGGAAAAGAGAATGAAATAGGTCTTGCTCCTTGAGGA
CAAAGGGAGAGAAGAAAAAGAAAGTGTCCTACTTCTTGAGGACAAAGTGAAAAAGAGTACGTCCC
GTTTTTCGAGGACAAAGGAAAAAGGGAAACGAAATACGTCCTACTCTCTGAGGACAAAAGAAAAA
GGAAAATAAAGTGCGTCCTGCTTTTTGAGGACAAAAGAGAAAAGAAGGGAAGG
Found at i:168550 original size:42 final size:43
Alignment explanation
Indices: 168491--168592 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
168481 CTCGTTTTTC
* *
168491 GAGGACAAAGGAAAAAGGGAAACGAAA-TACATCCTACTCTCT
1 GAGGACAAAAGAAAAAGGGAAAAGAAAGTACATCCTACTCTCT
* *** *
168533 GAGGACAAAAGAAAAA-GGAAAATAAAGTGTGTCCTACTCTTT
1 GAGGACAAAAGAAAAAGGGAAAAGAAAGTACATCCTACTCTCT
168575 GAGGACAAAAGAGAAAAG
1 GAGGACAAAAGA-AAAAG
168593 AACGGAAGGA
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
41 8 0.16
42 38 0.76
43 4 0.08
ACGTcount: A:0.48, C:0.14, G:0.24, T:0.15
Consensus pattern (43 bp):
GAGGACAAAAGAAAAAGGGAAAAGAAAGTACATCCTACTCTCT
Found at i:169316 original size:45 final size:42
Alignment explanation
Indices: 169183--169320 Score: 136
Period size: 42 Copynumber: 3.2 Consensus size: 42
169173 TGCCCCATTT
* * *
169183 TTTGAGGACAAAGGAAAAAGGGAAACGAAA-TACGTCCTACTC
1 TTTGAGGACAAAAGAAAAA-GGAAAAGAAAGTGCGTCCTACTC
* * * *
169225 TCTGAGGACAAAAGAAAAAGGAAAATAAAGTGCATCCTGCTC
1 TTTGAGGACAAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTC
* *
169267 TTTGAGGACAAAAGAGAAAA-GAAGGGAAGGAAGTGTGTCCTACTC
1 TTTGAGGACAAAAGA-AAAAGGAA---AAGAAAGTGCGTCCTACTC
169312 TTTGAGGAC
1 TTTGAGGAC
169321 TGAAAAGTGC
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
41 8 0.10
42 43 0.55
43 4 0.05
45 23 0.29
ACGTcount: A:0.41, C:0.14, G:0.26, T:0.18
Consensus pattern (42 bp):
TTTGAGGACAAAAGAAAAAGGAAAAGAAAGTGCGTCCTACTC
Done.