Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold424
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 897778
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 1 of 6
Found at i:2080 original size:20 final size:21
Alignment explanation
Indices: 2054--2101 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
2044 TTTGTTGAAG
2054 ATTTTGATG-AAAAATAGA-GA
1 ATTTTGATGCAAAAA-AGATGA
*
2074 GTTTTGATGCAAAAAAGATGA
1 ATTTTGATGCAAAAAAGATGA
2095 ATTTTGA
1 ATTTTGA
2102 AAAAGATTTG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 11 0.46
21 13 0.54
ACGTcount: A:0.44, C:0.02, G:0.21, T:0.33
Consensus pattern (21 bp):
ATTTTGATGCAAAAAAGATGA
Found at i:6713 original size:15 final size:15
Alignment explanation
Indices: 6695--6723 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
6685 CGAGTCAACT
6695 TCTTCATCATCATTA
1 TCTTCATCATCATTA
6710 TCTTCATCATCATT
1 TCTTCATCATCATT
6724 GATGGTTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.24, C:0.28, G:0.00, T:0.48
Consensus pattern (15 bp):
TCTTCATCATCATTA
Found at i:8302 original size:20 final size:20
Alignment explanation
Indices: 8277--8331 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
8267 ATTGGGCTTA
* *
8277 ATGTATCGATACATTTTACC
1 ATGTATCGATACAATTCACC
*
8297 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCACC
8317 ATGTATCGATACAAT
1 ATGTATCGATACAAT
8332 GTATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACAATTCACC
Found at i:8335 original size:13 final size:13
Alignment explanation
Indices: 8317--8341 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8307 ACAATTCATC
8317 ATGTATCGATACA
1 ATGTATCGATACA
8330 ATGTATCGATAC
1 ATGTATCGATAC
8342 TGAGTGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:8434 original size:32 final size:33
Alignment explanation
Indices: 8391--8452 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
8381 CTTTTCAAGG
* *
8391 TGTATCTATACTATG-AACATGTATCGATATAA
1 TGTATCGATACTAAGCAACATGTATCGATATAA
8423 TGTATCGATACTAAGCAACATGTATCGATA
1 TGTATCGATACTAAGCAACATGTATCGATA
8453 CTTTCTGGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACTAAGCAACATGTATCGATATAA
Found at i:9225 original size:13 final size:13
Alignment explanation
Indices: 9207--9233 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
9197 TTTTTACAAT
9207 TTGTATCGATACA
1 TTGTATCGATACA
9220 TTGTATCGATACA
1 TTGTATCGATACA
9233 T
1 T
9234 AAGTTTTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:9264 original size:20 final size:21
Alignment explanation
Indices: 9218--9272 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
9208 TGTATCGATA
9218 CATTGTATCGATACA-TAAGT
1 CATTGTATCGATACATTAAGT
* *
9238 -TTTGTATCGATACATTTA-T
1 CATTGTATCGATACATTAAGT
*
9257 CATTGTATTGATACAT
1 CATTGTATCGATACAT
9273 CTGGGTAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.44
Consensus pattern (21 bp):
CATTGTATCGATACATTAAGT
Found at i:9626 original size:20 final size:21
Alignment explanation
Indices: 9584--9626 Score: 54
Period size: 20 Copynumber: 2.1 Consensus size: 21
9574 GAGCTCTGAC
*
9584 CAGCCACCATTACATTAATAT
1 CAGCCACCATTACATCAATAT
9605 CAGCCACC-TTAC-TCAATCAT
1 CAGCCACCATTACATCAAT-AT
9625 CA
1 CA
9627 TGCTGCTAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
19 4 0.20
20 8 0.40
21 8 0.40
ACGTcount: A:0.35, C:0.35, G:0.05, T:0.26
Consensus pattern (21 bp):
CAGCCACCATTACATCAATAT
Found at i:15372 original size:24 final size:24
Alignment explanation
Indices: 15319--15374 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
15309 ATTTTTTTTC
* * *
15319 TTTTTCTTTCTTTCTTCTTCATCT
1 TTTTTTTTTCTTTCTTCCTCAACT
*
15343 TCTTTTTTTCTTTCTTACCT-AACT
1 TTTTTTTTTCTTTCTT-CCTCAACT
15367 TTTTTTTT
1 TTTTTTTT
15375 AGCCCATAAC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 24 0.92
25 2 0.08
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (24 bp):
TTTTTTTTTCTTTCTTCCTCAACT
Found at i:16269 original size:20 final size:20
Alignment explanation
Indices: 16244--16317 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
16234 GGAAAAAAAG
* *
16244 AGAATGCATCGATAAATTGA
1 AGAATGTATCGATACATTGA
* *
16264 AGAATGAATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
16284 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
16304 AAAATGTATCGATA
1 AGAATGTATCGATA
16318 TATCTGGGTA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.96
21 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.16, T:0.28
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:17018 original size:48 final size:48
Alignment explanation
Indices: 16935--17200 Score: 288
Period size: 48 Copynumber: 5.6 Consensus size: 48
16925 GAAGGAGTGC
* * * *
16935 CAATGTGCTAATTCAAGGCCAACGACATCAAGCTAAGGGAAAAGTGGA
1 CAATGTGTTGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
* ** * *
16983 CAATGTGTTGATTTAAGGTTAGCAACATTAAGCTAAAGGAAAAGTGGA
1 CAATGTGTTGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
* *
17031 CAATGTGTTGATTCAAGGCCAACGACATTGAGCTAAGGGAAAAGTGGA
1 CAATGTGTTGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
* * *
17079 CAATGT-TCTAATTCAAGGCCAGCGACATTGAGCTAAGGGAAAAGTTGA
1 CAATGTGT-TGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
* * * * *
17127 CAATGTGCTT-ATTCAAGGCCAGCAAAATTGAGCTAA--TAAAGGTGGA
1 CAATGTG-TTGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
* * *
17173 CAATATGCTGATTCAAGGCTAGCGACAT
1 CAATGTGTTGATTCAAGGCCAGCGACAT
17201 CGGACTTGAA
Statistics
Matches: 185, Mismatches: 29, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
45 1 0.01
46 28 0.15
47 1 0.01
48 153 0.83
49 1 0.01
50 1 0.01
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (48 bp):
CAATGTGTTGATTCAAGGCCAGCGACATTAAGCTAAGGGAAAAGTGGA
Found at i:17349 original size:28 final size:28
Alignment explanation
Indices: 17290--18521 Score: 686
Period size: 28 Copynumber: 43.8 Consensus size: 28
17280 CACTAACTTA
*
17290 TGTGGGCTTTGAAGGGGTATGCCACTGACT
1 TGTGGGCTTTGAAAGGG--TGCCACTGACT
* * *
17320 TGTGGGCTTTAAAAGGGTGCCATTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
17348 TGTGAGCTTTGGAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
17376 TGTGGGCTTTGGAAGGGTGCCACTGATTT
1 TGTGGGCTTTGAAAGGGTGCCACTGA-CT
17405 GTGTGGGCTTTGAAAGGGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGG-TGCCACTGACT
* *
17435 TGTGGGCTTTGAAGAGAGTTGCCACCGACTT
1 TGTGGGCTTTGAA-AG-GGTGCCACTGAC-T
**
17466 GTGTGGGCTTTGAAAGGGTGCCACCAACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
17495 TGTGGACTTTGAAAGGATGCCACTCATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
17523 TGTGGGCTTTGAAAAGGTGCCACTGACTT
1 TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* * *
17552 ATGTGGGCTTTGAAAAGGATGCCACCGAAT
1 -TGTGGGCTTTG-AAAGGGTGCCACTGACT
* * * *
17582 TATGGACTTTGAAAGGATGCCACTGACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
17610 TGTGGGCTTTGAAAGGGTGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
17638 TGTGGGCTTTGAAAGGATGCCACTGATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
17666 TGTGGGCTTTAAAAAGATGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
17694 TATGGGCTTTGAAAAGAGTGCCACCGACT
1 TGTGGGCTTTG-AAAGGGTGCCACTGACT
* * *
17723 TATGGACTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
17751 TGTGGGCTTTGAAAGGGTGCCACCGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
17779 TGTGGACTTTGAAAGGATGCCACTCATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
17807 TGTGGGCTTTGAAAGGGTGCCACTGACTT
1 TGTGGGCTTTGAAAGGGTGCCACTGAC-T
* * * *
17836 GTGTGGGCTTTGAAAAAGATGCCACGGAGT
1 -TGTGGGCTTTG-AAAGGGTGCCACTGACT
* * * * *
17866 TGTGGACTTTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
17894 TGTGGACCTTAAAAGAGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
17922 TGTGGACTTTAAAAGGGTGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* ** * *
17950 TGTGGACTTAAAAATGGTGCCA-TGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
* * * *
17978 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
18005 TGTGGACCTTAAAAGGTTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
18033 TGTGGAC-TTAAAAGGTTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
18060 TGTGGAC-TTGAAAGGTTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
18087 TATGGAC-TTAAAATTGGTGCCA-TGGAGT
1 TGTGGGCTTTGAAA-GGGTGCCACT-GACT
* * *
18115 TGTGGACTTTAAAAGGGTGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* * * * *
18143 TATGGAC-TT-AAAAGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
18169 TGTGGAC-TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
18196 TGTGGACTTTAAAAGGATGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
18224 TGTGGACTTTAAAATGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
18252 TGTGGACTTTAAAAGGATGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* * * * *
18280 TGTGGAC-TTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** * *
18307 TGTGGACTTAAAAATGGTGCCA-TGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACT-GACT
* * *
18335 TGTGGACTTTGAAACGGTGCCA-TGAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* * * * *
18363 TGTGGACCTTAAAACGGTGCCAC-GAAGT
1 TGTGGGCTTTGAAAGGGTGCCACTG-ACT
* * * * * *
18391 TATGGAC-TTAAAAGGATGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
18418 TGTGGAC-TTAAAAGTGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
18445 TGTGGAC-TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * * *
18472 TGTGGACTTTAAAAGGTTGCCACGGAGT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
18500 TGTGGAC-TTAAAAGGTTGCCAC
1 TGTGGGCTTTGAAAGGGTGCCAC
18522 GCAGTTATGG
Statistics
Matches: 1044, Mismatches: 123, Indels: 73
0.84 0.10 0.06
Matches are distributed among these distances:
26 22 0.02
27 222 0.21
28 607 0.58
29 66 0.06
30 77 0.07
31 37 0.04
32 13 0.01
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.27
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:18594 original size:27 final size:27
Alignment explanation
Indices: 17621--18592 Score: 958
Period size: 28 Copynumber: 35.1 Consensus size: 27
17611 GTGGGCTTTG
* * * *
17621 AAAGGGTGCCACCGACTTGTGGGCTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * * *
17649 AAAGGATGCCACTGATTTGTGGGCTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * * * * *
17677 AAAAGATGCCACCGACTTATGGGCTTTGA
1 AAAGGGTGCCACGGAGTTGTGGAC-TT-A
* * * * *
17706 AAAGAGTGCCACCGACTTATGGACTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * * * *
17734 AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * *
17762 AAAGGGTGCCACCGACTTGTGGACTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* ** * * *
17790 AAAGGATGCCACTCATTTGTGGGCTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * *
17818 AAAGGGTGCCACTGACTTGTGTGGGCTTTGA
1 AAAGGGTGCCACGGA-GT-TGTGGAC-TT-A
* *
17849 AAAAGATGCCACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
*
17877 AAAGGATGCCACGGAGTTGTGGACCTTA
1 AAAGGGTGCCACGGAGTTGTGGA-CTTA
*
17905 AAAGAGTGCCACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
*
17933 AAAGGGTGCCACGAAGTTGTGGACTTAA
1 AAAGGGTGCCACGGAGTTGTGGACTT-A
* *
17961 AAATGGTGCCATGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
17988 AAAGGGTGCCACGGAGTTGTGGACCTTA
1 AAAGGGTGCCACGGAGTTGTGGA-CTTA
*
18016 AAAGGTTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
18043 AAAGGTTGCCACGGAGTTGTGGACTTG
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
18070 AAAGGTTGCCACGGAGTTATGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* *
18097 AAATTGGTGCCATGGAGTTGTGGACTTTA
1 AAA-GGGTGCCACGGAGTTGTGGAC-TTA
* *
18126 AAAGGGTGCCACGAAGTTATGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18153 AAA-GGTGCCACAGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18179 AAAGGGTGCCACAGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* *
18207 AAAGGATGCCACAGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* *
18235 AAATGATGCCACGGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* *
18263 AAAGGATGCCACGAAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18290 AAAGGATGCCACGGAGTTGTGGACTTAA
1 AAAGGGTGCCACGGAGTTGTGGACTT-A
* * *
18318 AAATGGTGCCATGGAGTTGTGGACTTTG
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
* * *
18346 AAACGGTGCCATGAAGTTGTGGACCTTA
1 AAAGGGTGCCACGGAGTTGTGGA-CTTA
* * *
18374 AAACGGTGCCACGAAGTTATGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18401 AAAGGATGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18428 AAAGTGTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18455 AAAGGGTGCCACAGAGTTGTGGACTTTA
1 AAAGGGTGCCACGGAGTTGTGGAC-TTA
*
18483 AAAGGTTGCCACGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* * *
18510 AAAGGTTGCCACGCAGTTATGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
* * * *
18537 AAAGGTTACCATGGAGTTGTGGGCTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
*
18564 AAAGGGTG-CATGGAGTTGTGGACTTA
1 AAAGGGTGCCACGGAGTTGTGGACTTA
18590 AAA
1 AAA
18593 AGGAATGCCA
Statistics
Matches: 834, Mismatches: 94, Indels: 34
0.87 0.10 0.04
Matches are distributed among these distances:
26 43 0.05
27 267 0.32
28 456 0.55
29 45 0.05
30 11 0.01
31 12 0.01
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.26
Consensus pattern (27 bp):
AAAGGGTGCCACGGAGTTGTGGACTTA
Found at i:19736 original size:22 final size:21
Alignment explanation
Indices: 19667--19758 Score: 73
Period size: 22 Copynumber: 4.2 Consensus size: 21
19657 CATGTCCTCG
*
19667 TTTTTTTATTTTTGTTGTT-ACC
1 TTTTTTTATTTTTCTT-TTCA-C
* *
19689 TTTCTTTATTTTACTTTTGCAC
1 TTTTTTTATTTTTCTTTT-CAC
19711 TTTTTTTATTTTTCTTTTCA-
1 TTTTTTTATTTTTCTTTTCAC
*
19731 -TTTTTTATGCTTTTGCTTTTGAC
1 TTTTTTTAT--TTTT-CTTTTCAC
19754 TTTTT
1 TTTTT
19759 CGTAATTTTG
Statistics
Matches: 57, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
19 8 0.14
21 8 0.14
22 36 0.63
23 1 0.02
24 4 0.07
ACGTcount: A:0.10, C:0.12, G:0.07, T:0.72
Consensus pattern (21 bp):
TTTTTTTATTTTTCTTTTCAC
Found at i:26786 original size:50 final size:50
Alignment explanation
Indices: 26672--26817 Score: 222
Period size: 50 Copynumber: 2.9 Consensus size: 50
26662 TTTTAACTAG
* *
26672 ATGTATCGATACATTGAAAAATGTATCAATACATCTGGG-AAAAAAGACAGA
1 ATGTATCGATACATTGAAAAATGTATC--GACATCTGGGTAAAAAAAACAGA
26723 ATGTATCGATACATTGAAAAATGTATCGACATCTGGGTAAAAAAAACAGA
1 ATGTATCGATACATTGAAAAATGTATCGACATCTGGGTAAAAAAAACAGA
*
26773 ATGTATCGATACATTGAAAAATGTATCGATACATCTGGATAAAAA
1 ATGTATCGATACATTGAAAAATGTATCG--ACATCTGGGTAAAAA
26818 TATGATTTTT
Statistics
Matches: 89, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
49 9 0.10
50 39 0.44
51 27 0.30
52 14 0.16
ACGTcount: A:0.46, C:0.12, G:0.17, T:0.25
Consensus pattern (50 bp):
ATGTATCGATACATTGAAAAATGTATCGACATCTGGGTAAAAAAAACAGA
Found at i:32135 original size:68 final size:68
Alignment explanation
Indices: 32026--32164 Score: 260
Period size: 68 Copynumber: 2.0 Consensus size: 68
32016 AGACAAAGAG
*
32026 TAACCTTTTTCATTTTGAACAATGTTGCAATATGTGATAAATATTTCTAAATATTCATCTTTGGT
1 TAACCTTTTTCATTTTAAACAATGTTGCAATATGTGATAAATATTTCTAAATATTCATCTTTGGT
32091 ACT
66 ACT
*
32094 TAACCTTTTTCATTTTAAACAATGTTGCAATATGTGATAAATATTTCTAAATCTTCATCTTTGGT
1 TAACCTTTTTCATTTTAAACAATGTTGCAATATGTGATAAATATTTCTAAATATTCATCTTTGGT
32159 ACT
66 ACT
32162 TAA
1 TAA
32165 AAAGAGAACC
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.32, C:0.14, G:0.09, T:0.45
Consensus pattern (68 bp):
TAACCTTTTTCATTTTAAACAATGTTGCAATATGTGATAAATATTTCTAAATATTCATCTTTGGT
ACT
Found at i:33769 original size:33 final size:33
Alignment explanation
Indices: 33727--33791 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
33717 CATTTCATGG
*
33727 TGTATCGATACAAAGCAATTTGTATCAATACAA
1 TGTATCGATACAAAGCAATTAGTATCAATACAA
** *
33760 TGTATCGATACTTAGCAATTAGTATCGATACA
1 TGTATCGATACAAAGCAATTAGTATCAATACA
33792 TCTGAGCGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (33 bp):
TGTATCGATACAAAGCAATTAGTATCAATACAA
Found at i:33913 original size:23 final size:21
Alignment explanation
Indices: 33883--33925 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
33873 GCATCGAAGT
*
33883 ATTTTTACTTTGAAAAACATTG
1 ATTTTTAC-TTAAAAAACATTG
33905 ATTTATTACTTAAAAAACATT
1 ATTT-TTACTTAAAAAACATT
33926 TAAACTTGTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.42, C:0.09, G:0.05, T:0.44
Consensus pattern (21 bp):
ATTTTTACTTAAAAAACATTG
Found at i:34471 original size:12 final size:12
Alignment explanation
Indices: 34432--34474 Score: 59
Period size: 12 Copynumber: 3.3 Consensus size: 12
34422 TAATTGATTT
34432 ATTTAATTAAAA
1 ATTTAATTAAAA
34444 ATATTAATAATAAAA
1 AT-TTAAT--TAAAA
34459 ATTTAATTAAAA
1 ATTTAATTAAAA
34471 ATTT
1 ATTT
34475 TTATGTCAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 11 0.39
13 5 0.18
14 5 0.18
15 7 0.25
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
ATTTAATTAAAA
Found at i:34477 original size:14 final size:13
Alignment explanation
Indices: 34433--34475 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
34423 AATTGATTTA
34433 TTTAATTAAAAAT
1 TTTAATTAAAAAT
*
34446 ATTAATAATAAAAA-
1 TTTAAT--TAAAAAT
34460 TTTAATTAAAAAT
1 TTTAATTAAAAAT
34473 TTT
1 TTT
34476 TATGTCAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
12 6 0.24
13 8 0.32
14 5 0.20
15 6 0.24
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTAATTAAAAAT
Found at i:37184 original size:13 final size:13
Alignment explanation
Indices: 37166--37191 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37156 CAATTTTTTG
37166 TGTATCGATACAT
1 TGTATCGATACAT
37179 TGTATCGATACAT
1 TGTATCGATACAT
37192 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:37940 original size:21 final size:21
Alignment explanation
Indices: 37899--37942 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37889 CTCCCCTTTA
* *
37899 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
37920 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
37941 TC
1 TC
37943 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:37991 original size:61 final size:61
Alignment explanation
Indices: 37916--38037 Score: 244
Period size: 61 Copynumber: 2.0 Consensus size: 61
37906 CGTTTATTAA
37916 TAATTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCATATATCTATTTTCT
1 TAATTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCATATATCTATTTTCT
37977 TAATTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCATATATCTATTTTCT
1 TAATTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCATATATCTATTTTCT
38038 CTCCCCCTTT
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.33, C:0.20, G:0.03, T:0.44
Consensus pattern (61 bp):
TAATTCTCCCCCTTAATCAAGTAATTCATATCAAAAATTTATTTGCATATATCTATTTTCT
Found at i:41572 original size:15 final size:15
Alignment explanation
Indices: 41552--41582 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
41542 ATTTCGTTTG
*
41552 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
41567 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
41582 G
1 G
41583 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:43415 original size:21 final size:21
Alignment explanation
Indices: 43386--43430 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
43376 AAGTTTTCAT
*
43386 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
43406 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
43428 TTT
1 TTT
43431 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:46830 original size:13 final size:13
Alignment explanation
Indices: 46812--46838 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
46802 ACATCATGCT
46812 TTGTATCGATACA
1 TTGTATCGATACA
46825 TTGTATCGATACA
1 TTGTATCGATACA
46838 T
1 T
46839 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:46849 original size:33 final size:33
Alignment explanation
Indices: 46812--46956 Score: 94
Period size: 33 Copynumber: 4.5 Consensus size: 33
46802 ACATCATGCT
46812 TTGTATCGATACATTGTATCGATACATGGACAA
1 TTGTATCGATACATTGTATCGATACATGGACAA
*
46845 TTGTATCGATACA-TG-A---A-AC-TGG-CAG
1 TTGTATCGATACATTGTATCGATACATGGACAA
* *
46870 TAGCTACTCTATCACTATTTGTATCGATACATGGTAC-A
1 TTG-TA-TCGAT-AC-A-TTGTATCGATACATGG-ACAA
* * *
46908 TTATATCGATACATTGTATCGATACAT-AATGAA
1 TTGTATCGATACATTGTATCGATACATGGA-CAA
*
46941 TTGTATCGACACATTG
1 TTGTATCGATACATTG
46957 CTTGTAACGG
Statistics
Matches: 85, Mismatches: 11, Indels: 32
0.66 0.09 0.25
Matches are distributed among these distances:
25 4 0.05
26 5 0.06
27 6 0.07
28 3 0.04
29 1 0.01
31 4 0.05
32 3 0.04
33 42 0.49
34 1 0.01
35 3 0.04
36 6 0.07
37 5 0.06
38 1 0.01
39 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (33 bp):
TTGTATCGATACATTGTATCGATACATGGACAA
Found at i:46922 original size:13 final size:13
Alignment explanation
Indices: 46904--46934 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
46894 CGATACATGG
46904 TACATTATATCGA
1 TACATTATATCGA
*
46917 TACATTGTATCGA
1 TACATTATATCGA
46930 TACAT
1 TACAT
46935 AATGAATTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (13 bp):
TACATTATATCGA
Found at i:47468 original size:19 final size:18
Alignment explanation
Indices: 47444--47500 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
47434 GATTTATATT
47444 GATACATAAGTGTTGTATC
1 GATACATAAGT-TTGTATC
47463 GATAC--AA---TGTATC
1 GATACATAAGTTTGTATC
47476 GATACATAAGTTTTGTATC
1 GATACATAAG-TTTGTATC
47495 GATACA
1 GATACA
47501 GTGTATCGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.34
15 2 0.06
17 2 0.06
19 17 0.53
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (18 bp):
GATACATAAGTTTGTATC
Found at i:47475 original size:13 final size:13
Alignment explanation
Indices: 47457--47481 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47447 ACATAAGTGT
47457 TGTATCGATACAA
1 TGTATCGATACAA
47470 TGTATCGATACA
1 TGTATCGATACA
47482 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:47485 original size:32 final size:32
Alignment explanation
Indices: 47444--47508 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 32
47434 GATTTATATT
47444 GATACATAAGTGTTGTATCGATACAATGTATC
1 GATACATAAGTGTTGTATCGATACAATGTATC
* *
47476 GATACATAAGTTTTGTATCGATACAGTGTATC
1 GATACATAAGTGTTGTATCGATACAATGTATC
47508 G
1 G
47509 CTACGAAGCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.12, G:0.20, T:0.35
Consensus pattern (32 bp):
GATACATAAGTGTTGTATCGATACAATGTATC
Found at i:47627 original size:52 final size:52
Alignment explanation
Indices: 47586--47714 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
47576 CACTGATCTT
47586 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATGAAA
* * *
47638 TGTATCGATACATACAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATGAAA
47690 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
47715 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCAATACACTATGAAA
Found at i:56772 original size:13 final size:13
Alignment explanation
Indices: 56754--56780 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
56744 ACAATATTCC
56754 TTGTATCGATACA
1 TTGTATCGATACA
56767 TTGTATCGATACA
1 TTGTATCGATACA
56780 T
1 T
56781 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:59298 original size:20 final size:20
Alignment explanation
Indices: 59275--59336 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
59265 TGCTTTGTAT
*
59275 TGATACATTGTATCAATACA
1 TGATACATTGTATCGATACA
59295 TGAT-CATTGTATCGATACA
1 TGATACATTGTATCGATACA
*
59314 T-AGACAATTGTATCGATACA
1 TGATAC-ATTGTATCGATACA
59334 TGA
1 TGA
59337 AACTGGCAGT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
18 1 0.03
19 16 0.43
20 19 0.51
21 1 0.03
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (20 bp):
TGATACATTGTATCGATACA
Found at i:59399 original size:13 final size:13
Alignment explanation
Indices: 59381--59410 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
59371 AATACATGGT
59381 ACATTGTATCGAC
1 ACATTGTATCGAC
*
59394 ACATTGTATCGAT
1 ACATTGTATCGAC
59407 ACAT
1 ACAT
59411 GATGAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (13 bp):
ACATTGTATCGAC
Found at i:59420 original size:33 final size:33
Alignment explanation
Indices: 59364--59432 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 33
59354 CTATCACTGT
*
59364 TTGTATCAATACATGGTACATTGTATCGACACA
1 TTGTATCAATACATGATACATTGTATCGACACA
* * *
59397 TTGTATCGATACATGATGA-ATTGTATTGATACA
1 TTGTATCAATACATGAT-ACATTGTATCGACACA
59430 TTG
1 TTG
59433 CTTGTAACGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
33 30 0.97
34 1 0.03
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (33 bp):
TTGTATCAATACATGATACATTGTATCGACACA
Found at i:60253 original size:32 final size:36
Alignment explanation
Indices: 60208--60300 Score: 106
Period size: 36 Copynumber: 2.7 Consensus size: 36
60198 CAACACTATC
60208 TTTC-AAGGCTAAGATAGAAAC-CT-T-CCTATC-T
1 TTTCAAAGGCTAAGATAGAAACTCTCTCCCTATCTT
** *
60239 TTTCACGGGCTAAGATAGAACCTCTCTCCCTATCTT
1 TTTCAAAGGCTAAGATAGAAACTCTCTCCCTATCTT
* *
60275 TTTCAAAAGCTAAGATAGAACCTCTC
1 TTTCAAAGGCTAAGATAGAAACTCTC
60301 AATCACTTAG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
31 4 0.08
32 14 0.27
33 2 0.04
34 1 0.02
35 6 0.12
36 24 0.47
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (36 bp):
TTTCAAAGGCTAAGATAGAAACTCTCTCCCTATCTT
Found at i:63220 original size:48 final size:48
Alignment explanation
Indices: 63149--63244 Score: 192
Period size: 48 Copynumber: 2.0 Consensus size: 48
63139 AAAATCCATC
63149 CATCAATAGAAATTTACAGGGCTTTAAAGCTTGAAATTAAATATTCCT
1 CATCAATAGAAATTTACAGGGCTTTAAAGCTTGAAATTAAATATTCCT
63197 CATCAATAGAAATTTACAGGGCTTTAAAGCTTGAAATTAAATATTCCT
1 CATCAATAGAAATTTACAGGGCTTTAAAGCTTGAAATTAAATATTCCT
63245 AATCTTAATC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (48 bp):
CATCAATAGAAATTTACAGGGCTTTAAAGCTTGAAATTAAATATTCCT
Found at i:64026 original size:150 final size:150
Alignment explanation
Indices: 63755--64054 Score: 555
Period size: 150 Copynumber: 2.0 Consensus size: 150
63745 CAAATGGCAA
*
63755 ACATATTGTAACAAACTGGGCCAATCAACATCGTTTTTAATCTAAAAGATACCTAGAAAAACCAT
1 ACATATTGTAACAAACTGGGCCAACCAACATCGTTTTTAATCTAAAAGATACCTAGAAAAACCAT
*
63820 AACATTTAGTTTGTTTTTTTGCATGCAGAAAAACAGATACTTCCAACAGAATTTTAGAATAACAT
66 AACATTTAGTTTGTTTTTTTGCATGCAGAAAAACAGATACTTCCAACAGAACTTTAGAATAACAT
63885 TGGAAGATATGCCCCCACCT
131 TGGAAGATATGCCCCCACCT
*
63905 ACATATTGTAACAAACTGGGCCAACCAACATCGTTTTTAATCTAAAAGATACCTAGAAAAAGCAT
1 ACATATTGTAACAAACTGGGCCAACCAACATCGTTTTTAATCTAAAAGATACCTAGAAAAACCAT
* *
63970 AACATTTAGTTTGTTTTTTTGCATGCAGACAAACAGATACTTCCAGCAGAACTTTAGAATAACAT
66 AACATTTAGTTTGTTTTTTTGCATGCAGAAAAACAGATACTTCCAACAGAACTTTAGAATAACAT
64035 TGGAAGATATGCCCCCACCT
131 TGGAAGATATGCCCCCACCT
64055 TAACCTCTGT
Statistics
Matches: 145, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
150 145 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (150 bp):
ACATATTGTAACAAACTGGGCCAACCAACATCGTTTTTAATCTAAAAGATACCTAGAAAAACCAT
AACATTTAGTTTGTTTTTTTGCATGCAGAAAAACAGATACTTCCAACAGAACTTTAGAATAACAT
TGGAAGATATGCCCCCACCT
Found at i:71212 original size:10 final size:10
Alignment explanation
Indices: 71197--71222 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
71187 TTTGAAATAT
71197 TATATTTTTA
1 TATATTTTTA
71207 TATATTTTTA
1 TATATTTTTA
71217 TATATT
1 TATATT
71223 AATAATTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TATATTTTTA
Found at i:71219 original size:23 final size:23
Alignment explanation
Indices: 71158--71263 Score: 56
Period size: 25 Copynumber: 4.3 Consensus size: 23
71148 AAGAAAAAAA
* *
71158 TTTATGTATTTGTAT-TTATATTT
1 TTTATATATTTATATATTATA-TT
* *
71181 TTTATAT-TTGAAATATTATATT
1 TTTATATATTTATATATTATATT
71203 TTTATATATTTTTATATATTAATAATT
1 TTTATATA--TTTATATATT-AT-ATT
* *
71230 TATTTTAT-TTTATGTATATTTTATT
1 T-TTATATATTTA--TATATTATATT
71255 TTATATATA
1 TT-TATATA
71264 AAAGAAAAAA
Statistics
Matches: 63, Mismatches: 9, Indels: 19
0.69 0.10 0.21
Matches are distributed among these distances:
22 13 0.21
23 11 0.17
24 1 0.02
25 20 0.32
26 3 0.05
27 10 0.16
28 5 0.08
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (23 bp):
TTTATATATTTATATATTATATT
Found at i:71249 original size:16 final size:16
Alignment explanation
Indices: 71193--71263 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 16
71183 TATATTTGAA
*
71193 ATATTATATTTT-TAT
1 ATATTTTATTTTATAT
71208 ATATTTTTATATATTAATAAT
1 ATA-TTTTAT-T-TT-AT-AT
* *
71229 TTATTTTATTTTATGT
1 ATATTTTATTTTATAT
71245 ATATTTTATTTTATAT
1 ATATTTTATTTTATAT
71261 ATA
1 ATA
71264 AAAGAAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
15 3 0.07
16 23 0.51
17 3 0.07
18 4 0.09
19 1 0.02
20 7 0.16
21 4 0.09
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.65
Consensus pattern (16 bp):
ATATTTTATTTTATAT
Found at i:71554 original size:11 final size:11
Alignment explanation
Indices: 71518--71560 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
71508 TCGTATCATG
71518 TTTATATTATTT
1 TTTA-ATTATTT
* *
71530 TTTGATTATGT
1 TTTAATTATTT
71541 TTTAATTATTT
1 TTTAATTATTT
*
71552 TTTATTTAT
1 TTTAATTAT
71561 ATTATGTTCA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
11 23 0.88
12 3 0.12
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.72
Consensus pattern (11 bp):
TTTAATTATTT
Found at i:72462 original size:16 final size:16
Alignment explanation
Indices: 72437--72486 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
72427 TATAAAAAAT
*
72437 TATAATATAATATAAA
1 TATAAAATAATATAAA
*
72453 TATAAAATAATGTAAA
1 TATAAAATAATATAAA
*
72469 TAT-AAAT-ATACAAA
1 TATAAAATAATATAAA
72483 TATA
1 TATA
72487 TTAAATTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
14 8 0.28
15 4 0.14
16 17 0.59
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (16 bp):
TATAAAATAATATAAA
Found at i:72472 original size:22 final size:23
Alignment explanation
Indices: 72445--72492 Score: 73
Period size: 22 Copynumber: 2.1 Consensus size: 23
72435 ATTATAATAT
72445 AATATAAATATA-AAATA-ATGTA
1 AATATAAATATACAAATATAT-TA
72467 AATATAAATATACAAATATATTA
1 AATATAAATATACAAATATATTA
72490 AAT
1 AAT
72493 TTTATATAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 12 0.50
23 10 0.42
24 2 0.08
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.33
Consensus pattern (23 bp):
AATATAAATATACAAATATATTA
Found at i:73126 original size:19 final size:19
Alignment explanation
Indices: 73102--73147 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
73092 ATGTTTTTAG
73102 TATATATTAGATA-TATATA
1 TATATATTA-ATATTATATA
*
73121 TATATATTAATATTTTATA
1 TATATATTAATATTATATA
73140 TATATATT
1 TATATATT
73148 TTTAGTTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (19 bp):
TATATATTAATATTATATA
Found at i:76942 original size:79 final size:79
Alignment explanation
Indices: 76840--77271 Score: 371
Period size: 78 Copynumber: 5.5 Consensus size: 79
76830 TTTTCGATGA
* * * * * * *
76840 AAAAATTAATATTTTGGAGATAAAAACGAGGTTGGAGTATCCTCTCGAAAACAACGGGGTTAGAG
1 AAAAATTGATATTTTAGAAATAAAAACGGGGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAG
76905 TATCATCGATGGTG
66 TATCATCGATGGTG
* * * * *
76919 AAAAATTGATATTTTAGAAAT-AAAACTGGGGTTGGAGCATCCTTTTGGAAATAA-AGGGGATGG
1 AAAAATTGATATTTTAGAAATAAAAAC-GGGGTTGGAGTATCCTCTCGAAAATAACA-GGGTTGG
*
76982 AGTATCCTCGATGGTG
64 AGTATCATCGATGGTG
* * * * * *
76998 AAAAATTGATATTTTGGAAATAAAAATGGAGTTGGAGTAT-TTCCTCGGAAA-AACAAGGTTGGA
1 AAAAATTGATATTTTAGAAATAAAAACGGGGTTGGAGTATCCT-CTCGAAAATAACAGGGTTGGA
* *
77061 GT-TCCTCGATGGTA
65 GTATCATCGATGGTG
* * * *
77075 AAAAATCGATATTTT-GAAA-ATAAAACTGGGGTTAGAGTTTTC-CTC-ACAAATAACAGGGTTG
1 AAAAATTGATATTTTAGAAATA-AAAAC-GGGGTTGGAGTATCCTCTCGA-AAATAACAGGGTTG
*
77136 GAGTATCATTGATGGTG
63 GAGTATCATCGATGGTG
* * * **
77153 AAATATTGATATTTTAGAAATAAAATCGGGGTTGGAGTATCC-CTTGAAAATAACATAGTTGGAG
1 AAAAATTGATATTTTAGAAATAAAAACGGGGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAG
** * * * *
77217 TATCCCCAACGATA
66 TATCATCGATGGTG
* * * *
77231 AAAAATCGATATTTTAAAAATATAACCGGGGTTGGAGTATC
1 AAAAATTGATATTTTAGAAATAAAAACGGGGTTGGAGTATC
77272 TCCGATAGTG
Statistics
Matches: 284, Mismatches: 55, Indels: 29
0.77 0.15 0.08
Matches are distributed among these distances:
75 1 0.00
76 14 0.05
77 48 0.17
78 110 0.39
79 106 0.37
80 5 0.02
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (79 bp):
AAAAATTGATATTTTAGAAATAAAAACGGGGTTGGAGTATCCTCTCGAAAATAACAGGGTTGGAG
TATCATCGATGGTG
Found at i:77096 original size:77 final size:79
Alignment explanation
Indices: 76839--77270 Score: 305
Period size: 79 Copynumber: 5.5 Consensus size: 79
76829 TTTTTCGATG
** * * * * * * ** *
76839 AAAAAATTAATATTTTGGAGATAAAAACGAGGTTGGAGTA-TCCTCTCGAAAACAACGGGGTTAG
1 AAAAAATCGATATTTTGAAAATAAAAATGGGGTTGGAGTATTTC-CTCGAAAATAACAAGGTTGG
*
76903 AGTATCATCGATGGT
65 AGTATCCTCGATGGT
* * * * * * * *
76918 GAAAAATTGATATTTT-AGAAATAAAACTGGGGTTGGAGCA--TCCTTTTGGAAATAA-AGGGGA
1 AAAAAATCGATATTTTGA-AAATAAAAATGGGGTTGGAGTATTTCC--TCGAAAATAACA-AGGT
76979 TGGAGTATCCTCGATGGT
62 TGGAGTATCCTCGATGGT
* * * * *
76997 GAAAAATTGATATTTTGGAAATAAAAATGGAGTTGGAGTATTTCCTCGGAAA-AACAAGGTTGGA
1 AAAAAATCGATATTTTGAAAATAAAAATGGGGTTGGAGTATTTCCTCGAAAATAACAAGGTTGGA
77061 GT-TCCTCGATGGT
66 GTATCCTCGATGGT
* * *
77074 AAAAAATCGATATTTTGAAAATAAAACTGGGGTTAGAGT-TTTCCTC-ACAAATAACAGGGTTGG
1 AAAAAATCGATATTTTGAAAATAAAAATGGGGTTGGAGTATTTCCTCGA-AAATAACAAGGTTGG
* *
77137 AGTATCATTGATGGT
65 AGTATCCTCGATGGT
* * * * *
77152 GAAATATTGATATTTT-AGAAAT-AAAATCGGGGTTGGAGTA-TCCCTTGAAAATAACATA-GTT
1 AAAAAATCGATATTTTGA-AAATAAAAAT-GGGGTTGGAGTATTTCCTCGAAAATAACA-AGGTT
* * * *
77213 GGAGTATCCCCAACGAT
63 GGAGTATCCTCGATGGT
* * **
77230 AAAAAATCGATATTTTAAAAATATAACCGGGGTTGGAGTAT
1 AAAAAATCGATATTTTGAAAATAAAAATGGGGTTGGAGTAT
77271 CTCCGATAGT
Statistics
Matches: 281, Mismatches: 53, Indels: 38
0.76 0.14 0.10
Matches are distributed among these distances:
76 10 0.04
77 63 0.22
78 102 0.36
79 103 0.37
81 3 0.01
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (79 bp):
AAAAAATCGATATTTTGAAAATAAAAATGGGGTTGGAGTATTTCCTCGAAAATAACAAGGTTGGA
GTATCCTCGATGGT
Found at i:78330 original size:21 final size:21
Alignment explanation
Indices: 78306--78346 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
78296 CTAAGTAAAA
78306 ATACGTATT-GTATCAATACAT
1 ATAC-TATTGGTATCAATACAT
*
78327 ATACTATTGGTATTAATACA
1 ATACTATTGGTATCAATACA
78347 CAAAGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACTATTGGTATCAATACAT
Found at i:78411 original size:20 final size:19
Alignment explanation
Indices: 78386--78456 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
78376 ATCTTGAAAA
78386 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
78406 GTATCGATACAGATTGCAT
1 GTATCGATACACATTAAAT
**
78425 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
78446 GTATCGATACA
1 GTATCGATACA
78457 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:78509 original size:53 final size:53
Alignment explanation
Indices: 78426--78562 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
78416 AGATTGCATA
78426 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
78480 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
78533 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
78563 TTGGTAGTAG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
53 67 0.83
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:78601 original size:10 final size:10
Alignment explanation
Indices: 78586--78616 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
78576 AATCTCATTT
78586 TCACTATTCA
1 TCACTATTCA
78596 TCACTATTCA
1 TCACTATTCA
*
78606 TCACTGTTCA
1 TCACTATTCA
78616 T
1 T
78617 GTATCGATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (10 bp):
TCACTATTCA
Found at i:78638 original size:21 final size:22
Alignment explanation
Indices: 78604--78658 Score: 103
Period size: 21 Copynumber: 2.5 Consensus size: 22
78594 CATCACTATT
78604 CATCACTGTTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
78626 CATCACT-TTCATGTATCGATA
1 CATCACTGTTCATGTATCGATA
78647 CATCACTGTTCA
1 CATCACTGTTCA
78659 CACTATTCAC
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
21 21 0.66
22 11 0.34
ACGTcount: A:0.27, C:0.25, G:0.11, T:0.36
Consensus pattern (22 bp):
CATCACTGTTCATGTATCGATA
Found at i:78689 original size:45 final size:46
Alignment explanation
Indices: 78627--78720 Score: 129
Period size: 45 Copynumber: 2.0 Consensus size: 46
78617 GTATCGATAC
* *
78627 ATCACTTTCATGTATCGAT-ACATCACTGTTCA-CACTATTCACGT
1 ATCACTTTCATGTATCGATAAAATCACTGTACATCACTATTCACGT
*
78671 ATCACTATTCATGTATCGATAAAAATCACTGTACATCACTATTCATGT
1 ATCACT-TTCATGTATCGAT-AAAATCACTGTACATCACTATTCACGT
78719 AT
1 AT
78721 TGATACATTG
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
44 6 0.14
45 13 0.30
47 11 0.26
48 13 0.30
ACGTcount: A:0.32, C:0.23, G:0.09, T:0.36
Consensus pattern (46 bp):
ATCACTTTCATGTATCGATAAAATCACTGTACATCACTATTCACGT
Found at i:80861 original size:69 final size:67
Alignment explanation
Indices: 80721--81409 Score: 390
Period size: 61 Copynumber: 11.0 Consensus size: 67
80711 AAGTAGATAA
* * * * *
80721 GTGCCACCAACTTGTGTGGGCTTTAAGATAGAAAAGAGAGAGGCATCTTGCTTTTTGAGGACTAG
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGA-GCGTCCTGCTCTTTGAGGACTAG
80786 AAG
65 AAG
* * *
80789 GTGCCACCAGCTTGTATGGGCTTTAAAAGAGAAAAAGAGAGAGACGTCCTACTCTTTGAGGACTA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAG-AAAAGAGAGAG-CGTCCTGCTCTTTGAGGACTA
80854 GAAG
64 GAAG
* * * ** *
80858 GTGCTACCTAGCTTGTGTGGGCTTTAAAAGAGAAAAG-GA-AGTGTCCTGCTCTTTGAACACTAA
1 GTGCCACC-AACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAG
80921 AAG
65 AAG
* * * ** *
80924 GTGCCACCAACTTATGTGGGCTTTGAAA-AG--AA-A-AG-GCATTTTGCTATTTGAGGACTA-A
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
80982 AGG
66 A-G
* * * * * * *
80985 GTGCCACTAGCTTGTGTGGACTTT-TAA-AG----GA-A-AGTGTCCTGGTCTTTGAGGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81042 AG
66 AG
** * * *
81044 GTGCCACCAACTTGTGTAAGCTTTGAAA-AG--AA-A-AG-GCGTCTTGCTCTTTGAGGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81103 AG
66 AG
** * ** * *
81105 GTGCCACTTACTTGAGTGGG-TTTTTAA-AG----GA-A-AGTGTCCTGCTCTTTGAGGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81162 AG
66 AG
* * * *
81164 GTGCCACCAACTTGTGTGGGCTTTGAAA-AG--AA-A-AGA-CATCCTGCTCTTTGAGGA-AAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81222 AG
66 AG
* * * * *
81224 GTGCCACCAACTTGTGTGGGCTTTAAAAG-G----GAAAG-GCATCCTGTTCTTTAAGGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81283 AG
66 AG
* * * * * *
81285 GTGCCACTAACTTGTGTGGGTTTTGAAAG-G---AGA-AG-GCATCTTGCTTTTTGAGGACT-GA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAG-
81343 AAG
65 AAG
* * * * * * *
81346 CTACCACCAACTTGTGTGGGCTTTGAAAGA-AAAA-A-AG-GCATCTTGCTCTTTGAAGACTAAA
1 GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
81407 AG
66 AG
81409 G
1 G
81410 ATAAAAGGTT
Statistics
Matches: 507, Mismatches: 83, Indels: 67
0.77 0.13 0.10
Matches are distributed among these distances:
59 82 0.16
60 77 0.15
61 174 0.34
62 5 0.01
63 25 0.05
64 3 0.01
65 17 0.03
66 27 0.05
67 2 0.00
68 30 0.06
69 43 0.08
70 22 0.04
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (67 bp):
GTGCCACCAACTTGTGTGGGCTTTAAAAGAGAAAAGAGAGAGCGTCCTGCTCTTTGAGGACTAGA
AG
Found at i:80988 original size:61 final size:61
Alignment explanation
Indices: 80835--81409 Score: 590
Period size: 61 Copynumber: 9.4 Consensus size: 61
80825 GAGAGAGACG
* * * * * *
80835 TCCTACTCTTTGAGGACTAGAAGGTGCTACCTAGCTTGTGTGGGCTTTAAAAGAGAAAAGGAA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACC-AACTTGTGTGGGCTTTGAAA-AGAAAAGGCA
** *
80898 GTGTCCTGCTCTTTGAACACTAAAAGGTGCCACCAACTTATGTGGGCTTTGAAAAGAAAAGGCA
1 ---TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
** * * * * * * *
80962 TTTTGCTATTTGAGGACTAAAGGGTGCCACTAGCTTGTGTGGACTTT-TAAAGGAAAGTG--
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAG-GCA
* ** *
81021 TCCTGGTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTAAGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* ** * ** *
81082 TCTTGCTCTTTGAGGACTAAAAGGTGCCACTTACTTGAGTGGG-TTTTTAAAGGAAAGTG--
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAG-GCA
*
81141 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGACA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* *
81202 TCCTGCTCTTTGAGGA-AAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGGAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAGGCA
* * * * * *
81262 TCCTGTTCTTTAAGGACTAAAAGGTGCCACTAACTTGTGTGGGTTTTGAAAGGAGAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* * * * * *
81323 TCTTGCTTTTTGAGGACTGAAAGCTACCACCAACTTGTGTGGGCTTTGAAAGAAAAAAAGGCA
1 TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTG-AA-AAGAAAAGGCA
* *
81386 TCTTGCTCTTTGAAGACTAAAAGG
1 TCCTGCTCTTTGAGGACTAAAAGG
81410 ATAAAAGGTT
Statistics
Matches: 418, Mismatches: 78, Indels: 29
0.80 0.15 0.06
Matches are distributed among these distances:
59 81 0.19
60 88 0.21
61 164 0.39
62 5 0.01
63 28 0.07
64 9 0.02
65 17 0.04
66 26 0.06
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
Found at i:81067 original size:120 final size:119
Alignment explanation
Indices: 80840--81374 Score: 624
Period size: 120 Copynumber: 4.4 Consensus size: 119
80830 AGACGTCCTA
* * *
80840 CTCTTTGAGGACTAGAAGGTGCTACCTAGCTTGTGTGGGCTTTAAAAGAGAAAAGGAAGTGTCCT
1 CTCTTTGAGGACTAAAAGGTGCCA-CTA-CTTGTGTGGGCTTTTAAAG-G---A--AAGTGTCCT
** * *
80905 GCTCTTTGAACACTAAAAGGTGCCACCAACTTATGTGGGCTTTGAAAAGAAAAGGCATTTTG
58 GCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCTTG
* * * *
80967 CTATTTGAGGACTAAAGGGTGCCACTAGCTTGTGTGGACTTTTAAAGGAAAGTGTCCTGGTCTTT
1 CTCTTTGAGGACTAAAAGGTGCCACTA-CTTGTGTGGGCTTTTAAAGGAAAGTGTCCTGCTCTTT
** *
81032 GAGGACTAAAAGGTGCCACCAACTTGTGTAAGCTTTGAAAAGAAAAGGCGTCTTG
65 GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCTTG
* *
81087 CTCTTTGAGGACTAAAAGGTGCCACTTACTTGAGTGGGTTTTTAAAGGAAAGTGTCCTGCTCTTT
1 CTCTTTGAGGACTAAAAGGTGCCAC-TACTTGTGTGGGCTTTTAAAGGAAAGTGTCCTGCTCTTT
* *
81152 GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGACATCCTG
65 GAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCTTG
* * * *
81207 CTCTTTGAGGA-AAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGAAAG-GCATCCTGTTC
1 CTCTTTGAGGACTAAAAGGTGCCA-CTACTTGTGTGGGCTTTTAAA-GGAAAGTG--TCCTGCTC
* * * * *
81270 TTTAAGGACTAAAAGGTGCCACTAACTTGTGTGGGTTTTGAAAGGAGAAGGCATCTTG
62 TTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCTTG
* * * * * *
81328 CTTTTTGAGGACTGAAAGCTACCACCAACTTGTGTGGGCTTTGAAAG
1 CTCTTTGAGGACTAAAAGGTGCCA-CTACTTGTGTGGGCTTTTAAAG
81375 AAAAAAAGGC
Statistics
Matches: 358, Mismatches: 44, Indels: 18
0.85 0.10 0.04
Matches are distributed among these distances:
119 28 0.08
120 187 0.52
121 71 0.20
122 30 0.08
125 1 0.00
126 21 0.06
127 20 0.06
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.28
Consensus pattern (119 bp):
CTCTTTGAGGACTAAAAGGTGCCACTACTTGTGTGGGCTTTTAAAGGAAAGTGTCCTGCTCTTTG
AGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCATCTTG
Found at i:95699 original size:158 final size:157
Alignment explanation
Indices: 95421--95759 Score: 359
Period size: 158 Copynumber: 2.1 Consensus size: 157
95411 CATTCCCCGA
* * * * * *
95421 TGAAAAATTTAATATTTTGGATATAAAAACGGGGTTAAAGTATCTCGTCAAAATAACGAGGTTAT
1 TGAAAAA-TTGATATTTTGGAAATAAAAACGGGGTTAAAGTATCCCCTCAAAATAACAAGGTTAG
* * ** * *
95486 AGTATCCCCGATAGTGAAAAATCGATATTTTCAAAATAAAATCGGGGTTGGAGTAT-CCTTTTGA
65 AGTATCCCCGATAGTGAAAAATAGATATTTTCAAAATAAAATCGGGGCTAAAGTATCCCCTTAG-
95550 AAATAA-TAGGGTTGAAG--TCTCTCCGATGG
129 AAATAACT-GGGTTGAAGCATC-CT-CGATGG
* * * *
95579 TGAAAAATTGATATTTTGGAAATAAAAATGGGGTTAGAA-TATCCCCTCGGAAATAACAATGTTG
1 TGAAAAATTGATATTTTGGAAATAAAAACGGGGTTA-AAGTATCCCCTC-AAAATAACAAGGTTA
* *
95643 GAGTATCCTCGATGGTGAAAAATAGATATTTT-AGAAATAAAAAT-GGGGCTAAAGTATCCCCTT
64 GAGTATCCCCGATAGTGAAAAATAGATATTTTCA-AAAT-AAAATCGGGGCTAAAGTATCCCCTT
* *
95706 AGAAATAACTGGGTTGGAGCATCCTTGATGG
127 AGAAATAACTGGGTTGAAGCATCCTCGATGG
*
95737 TGAAAAATTGATATTTTGAAAAT
1 TGAAAAATTGATATTTTGGAAAT
95760 TAAACTAGGG
Statistics
Matches: 152, Mismatches: 21, Indels: 16
0.80 0.11 0.08
Matches are distributed among these distances:
157 34 0.22
158 103 0.68
159 13 0.09
160 2 0.01
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.30
Consensus pattern (157 bp):
TGAAAAATTGATATTTTGGAAATAAAAACGGGGTTAAAGTATCCCCTCAAAATAACAAGGTTAGA
GTATCCCCGATAGTGAAAAATAGATATTTTCAAAATAAAATCGGGGCTAAAGTATCCCCTTAGAA
ATAACTGGGTTGAAGCATCCTCGATGG
Found at i:95778 original size:79 final size:79
Alignment explanation
Indices: 95421--95781 Score: 284
Period size: 79 Copynumber: 4.6 Consensus size: 79
95411 CATTCCCCGA
* * * * * * * * *
95421 TGAAAAATTTAATATTTTGGATATAAAAACGGGGTTAAAGTATCTCGTCA-AAATAACGAGGTTA
1 TGAAAAA-TTGATATTTTGAAAATAAAAATGGGGTTAGAGTATCCCCTCAGAAATAACAAGGTTG
* * * *
95485 TAGTATCCCCGATAG
65 GAGCATCCTCGATGG
* * * * ** * *
95500 TGAAAAATCGATATTTTCAAAAT-AAAATCGGGGTTGGAGTAT-CCTTTTGAAAATAATAGGGTT
1 TGAAAAATTGATATTTTGAAAATAAAAAT-GGGGTTAGAGTATCCCCTCAG-AAATAACAAGGTT
*
95563 GAAG--TCTCTCCGATGG
64 GGAGCATC-CT-CGATGG
* * * *
95579 TGAAAAATTGATATTTTGGAAATAAAAATGGGGTTAGAATATCCCCTCGGAAATAACAATGTTGG
1 TGAAAAATTGATATTTTGAAAATAAAAATGGGGTTAGAGTATCCCCTCAGAAATAACAAGGTTGG
*
95644 AGTATCCTCGATGG
66 AGCATCCTCGATGG
* * * * **
95658 TGAAAAATAGATATTTT-AGAAATAAAAATGGGGCTAAAGTATCCCCTTAGAAATAACTGGGTTG
1 TGAAAAATTGATATTTTGA-AAATAAAAATGGGGTTAGAGTATCCCCTCAGAAATAACAAGGTTG
*
95722 GAGCATCCTTGATGG
65 GAGCATCCTCGATGG
* * * *
95737 TGAAAAATTGATATTTTGAAAATTAAACTAGGGTTGGAGTATCCC
1 TGAAAAATTGATATTTTGAAAATAAAAATGGGGTTAGAGTATCCC
95782 TGATGGCAAA
Statistics
Matches: 221, Mismatches: 50, Indels: 22
0.75 0.17 0.08
Matches are distributed among these distances:
77 8 0.04
78 23 0.10
79 176 0.80
80 12 0.05
81 2 0.01
ACGTcount: A:0.37, C:0.11, G:0.22, T:0.30
Consensus pattern (79 bp):
TGAAAAATTGATATTTTGAAAATAAAAATGGGGTTAGAGTATCCCCTCAGAAATAACAAGGTTGG
AGCATCCTCGATGG
Found at i:95794 original size:51 final size:51
Alignment explanation
Indices: 95712--95809 Score: 135
Period size: 51 Copynumber: 1.9 Consensus size: 51
95702 CCTTAGAAAT
* ** *
95712 AACTGGGTTGGAGCATCCTTGATGGTGAAAAATTGATATTTT-GAAAATTA
1 AACTGGGTTGGAGCATCCCTGATGGCAAAAAATCGATATTTTAGAAAATTA
*
95762 AACTAGGGTTGGAGTATCCCTGATGGCAAAAAATCGATATTTTAGAAA
1 AACT-GGGTTGGAGCATCCCTGATGGCAAAAAATCGATATTTTAGAAA
95810 TAAAATCGAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
50 4 0.10
51 33 0.80
52 4 0.10
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (51 bp):
AACTGGGTTGGAGCATCCCTGATGGCAAAAAATCGATATTTTAGAAAATTA
Found at i:95874 original size:130 final size:131
Alignment explanation
Indices: 95639--95916 Score: 309
Period size: 130 Copynumber: 2.1 Consensus size: 131
95629 AAATAACAAT
** *
95639 GTTGGAGTAT-CCTCGATGGTGAAAAATAGATATTTTAGAAATAAAAATGGGGCTAAAGTATCCC
1 GTTGGAGTATCCCTCGATGGCAAAAAATAGATATTTTAGAAATAAAAATGAGGCTAAAGTATCCC
* * * * * *
95703 CTTAGAAATAACTGGGTTGGAGCATCCTTGATGGTGAAAAATTGATATTTT-GAAAATTAAACTA
66 CTTAGAAATAACGGGGTTAGAGCATCCCTGACGGTGAAAAATCGATATTTTAG-AAA-TAAAATA
95767 -GG
129 GGG
* * *
95769 GTTGGAGTATCCCT-GATGGCAAAAAATCGATATTTTAGAAAT-AAAATCGAGGTTAGAGTAT-C
1 GTTGGAGTATCCCTCGATGGCAAAAAATAGATATTTTAGAAATAAAAAT-GAGGCTAAAGTATCC
* * *
95831 TCTTCGGAAATAACGGGGTTAGAGTATCCCTGACGGT-AGAAAATCGATATTTTAGAAATAAAAT
65 CCTT-AGAAATAACGGGGTTAGAGCATCCCTGACGGTGA-AAAATCGATATTTTAGAAATAAAAT
95895 AGGG
128 AGGG
*
95899 GTTAGAGTATCCCCTCGA
1 GTTGGAGTAT-CCCTCGA
95917 AAATAACAGG
Statistics
Matches: 124, Mismatches: 16, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
129 16 0.13
130 98 0.79
131 8 0.06
132 2 0.02
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (131 bp):
GTTGGAGTATCCCTCGATGGCAAAAAATAGATATTTTAGAAATAAAAATGAGGCTAAAGTATCCC
CTTAGAAATAACGGGGTTAGAGCATCCCTGACGGTGAAAAATCGATATTTTAGAAATAAAATAGG
G
Found at i:95902 original size:79 final size:79
Alignment explanation
Indices: 95766--96131 Score: 393
Period size: 79 Copynumber: 4.6 Consensus size: 79
95756 AAATTAAACT
* * * *
95766 AGGGTTGGAGTATCCCTGATGGCAAAAAATCGATATTTTAGAAATAAAATCGAGGTT-AGAGTAT
1 AGGGTTGGAGTATCCCTGATGGTAGAAAATCGATATTTTAGAAATAAAATGGGGGTTGA-AGTAT
* * *
95830 CTCTTCGGAAATAAC
65 CCCCTCGAAAATAAC
* * * *
95845 GGGGTTAGAGTATCCCTGACGGTAGAAAATCGATATTTTAGAAATAAAATAGGGGTT-AGAGTAT
1 AGGGTTGGAGTATCCCTGATGGTAGAAAATCGATATTTTAGAAATAAAATGGGGGTTGA-AGTAT
95909 CCCCTCGAAAATAAC
65 CCCCTCGAAAATAAC
* * *
95924 AGGGTTGGAGTAT-CCTCGATGAT-GAAAAATTGATATTTTAGAAATAAAATGGGGGTTGTAGTA
1 AGGGTTGGAGTATCCCT-GATGGTAG-AAAATCGATATTTTAGAAATAAAATGGGGGTTGAAGTA
* *
95987 TCCCTTTGAAAATAAC
64 TCCCCTCGAAAATAAC
* * *
96003 AGGGCTGGAGTAT-CCTCGATGATAGAAAATTGATATTTTAGAAATAAAATGGGGGTTGAAGTAT
1 AGGGTTGGAGTATCCCT-GATGGTAGAAAATCGATATTTTAGAAATAAAATGGGGGTTGAAGTAT
* *
96067 CTCCTCGGAAATAAC
65 CCCCTCGAAAATAAC
** * * *
96082 AAAGTTGGAGTATCCCTAATGGTGAAGAAAATC-ATATCTTGGAAATAAAA
1 AGGGTTGGAGTATCCCTGATGGT--AGAAAATCGATATTTTAGAAATAAAA
96132 ACATCAATGA
Statistics
Matches: 247, Mismatches: 33, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
78 4 0.02
79 217 0.88
80 19 0.08
81 7 0.03
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.28
Consensus pattern (79 bp):
AGGGTTGGAGTATCCCTGATGGTAGAAAATCGATATTTTAGAAATAAAATGGGGGTTGAAGTATC
CCCTCGAAAATAAC
Found at i:95989 original size:209 final size:209
Alignment explanation
Indices: 95554--95991 Score: 514
Period size: 209 Copynumber: 2.1 Consensus size: 209
95544 TTTTGAAAAT
* * ** * * *
95554 AATAGGGTTGAAGTCTCTCC-GATGGTGAAAAATTGATATTTTGGAAATAAAAATGGGGTTAGAA
1 AATAGGGTTGGAGTATC-CCTGATGGCAAAAAATCGATATTTTAGAAATAAAAATGAGGTTAGAA
* * *
95618 TATCCCCTCGGAAATAACAATGTTGGAGTATCCTCGATGGTGAAAAATAGATATTTTAGAAATAA
65 TATCCCCTCGGAAATAACAAGGTTAGAGTATCCTCGACGGTGAAAAATAGATATTTTAGAAATAA
* * * *
95683 AAATGGGGCTAAAGTATCCCCTTAGAAATAACTGGGTTGGAGCATCCTTGATGGTGAAAAATTGA
130 AAATGGGGCTAAAGTATCCCCTGAGAAATAACAGGGTTGGAGCATCCTCGATGATGAAAAATTGA
95748 TATTTTGAAAATTAA
195 TATTTTGAAAATTAA
* *
95763 ACTAGGGTTGGAGTATCCCTGATGGCAAAAAATCGATATTTTAGAAAT-AAAATCGAGGTTAGAG
1 AATAGGGTTGGAGTATCCCTGATGGCAAAAAATCGATATTTTAGAAATAAAAAT-GAGGTTAGAA
* * ** *
95827 TATCTCTTCGGAAATAACGGGGTTAGAGTATCC-CTGACGGT-AGAAAATCGATATTTTAGAAAT
65 TATCCCCTCGGAAATAACAAGGTTAGAGTATCCTC-GACGGTGA-AAAATAGATATTTTAGAAAT
* * *
95890 -AAAATAGGGGTTAGAGTATCCCCTCGA-AAATAACAGGGTTGGAGTATCCTCGATGATGAAAAA
128 AAAAAT-GGGGCTAAAGTATCCCCT-GAGAAATAACAGGGTTGGAGCATCCTCGATGATGAAAAA
95953 TTGATATTTT-AGAAA-TAA
191 TTGATATTTTGA-AAATTAA
* *
95971 AATGGGGGTTGTAGTATCCCT
1 AAT-AGGGTTGGAGTATCCCT
95992 TTGAAAATAA
Statistics
Matches: 194, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
208 20 0.10
209 173 0.89
210 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.29
Consensus pattern (209 bp):
AATAGGGTTGGAGTATCCCTGATGGCAAAAAATCGATATTTTAGAAATAAAAATGAGGTTAGAAT
ATCCCCTCGGAAATAACAAGGTTAGAGTATCCTCGACGGTGAAAAATAGATATTTTAGAAATAAA
AATGGGGCTAAAGTATCCCCTGAGAAATAACAGGGTTGGAGCATCCTCGATGATGAAAAATTGAT
ATTTTGAAAATTAA
Found at i:96002 original size:288 final size:289
Alignment explanation
Indices: 95502--96046 Score: 714
Period size: 288 Copynumber: 1.9 Consensus size: 289
95492 CCCGATAGTG
* * * *
95502 AAAAATCGATATTTTCAAAATAAAATCGGGGTTGGAGTATCCTTTTGAAAATAATAGGGTTGAAG
1 AAAAATCGATATTTTCAAAATAAAATCGAGGTTAGAGTATCCTTTCGAAAATAACAGGGTTGAAG
* * * * *
95567 TCTCTCCGATGGTGAAAAATTGATATTTTGGAAATAAAAATGGGGTTAGAATATCCCCTCGGAAA
66 TATCTCCGACGGTGAAAAATCGATATTTTAGAAATAAAAATGGGGTTAGAATATCCCCTCGAAAA
* *
95632 TAACAATGTTGGAGTATCCTCGATGGTGAAAAATAGATATTTTAGAAATAAAAATGGGGCTAAAG
131 TAACAAGGTTGGAGTATCCTCGATGATGAAAAATAGATATTTTAGAAATAAAAATGGGGCTAAAG
* * * *
95697 TATCCCCTTAGAAATAACTGGGTTGGAGCATCCTTGATGGT-GAAAAATTGATATTTT-GAAAAT
196 TATCCCCTTAGAAATAACAGGGCTGGAGCATCCTCGATGATAG-AAAATTGATATTTTAGAAAAT
95760 TAAACTAGGGTTGGAGTATCCCTGATGGCA
260 TAAACTAGGGTTGGAGTATCCCTGATGGCA
* *
95790 AAAAATCGATATTTT-AGAAATAAAATCGAGGTTAGAGTAT-CTCTTCGGAAATAACGGGGTT-A
1 AAAAATCGATATTTTCA-AAATAAAATCGAGGTTAGAGTATCCT-TTCGAAAATAACAGGGTTGA
*
95852 GAGTATC-CCTGACGGT-AGAAAATCGATATTTTAGAAAT-AAAATAGGGGTTAGAGTATCCCCT
64 -AGTATCTCC-GACGGTGA-AAAATCGATATTTTAGAAATAAAAAT-GGGGTTAGAATATCCCCT
* *
95914 CGAAAATAACAGGGTTGGAGTATCCTCGATGATGAAAAATTGATATTTTAGAAAT-AAAATGGGG
125 CGAAAATAACAAGGTTGGAGTATCCTCGATGATGAAAAATAGATATTTTAGAAATAAAAAT-GGG
* ** * *
95978 GTTGTAGTAT-CCCTTTGAAAATAACAGGGCTGGAGTATCCTCGATGATAGAAAATTGATATTTT
189 GCTAAAGTATCCCCTTAG-AAATAACAGGGCTGGAGCATCCTCGATGATAGAAAATTGATATTTT
96042 AGAAA
253 AGAAA
96047 TAAAATGGGG
Statistics
Matches: 222, Mismatches: 25, Indels: 19
0.83 0.09 0.07
Matches are distributed among these distances:
287 23 0.10
288 194 0.87
289 5 0.02
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.29
Consensus pattern (289 bp):
AAAAATCGATATTTTCAAAATAAAATCGAGGTTAGAGTATCCTTTCGAAAATAACAGGGTTGAAG
TATCTCCGACGGTGAAAAATCGATATTTTAGAAATAAAAATGGGGTTAGAATATCCCCTCGAAAA
TAACAAGGTTGGAGTATCCTCGATGATGAAAAATAGATATTTTAGAAATAAAAATGGGGCTAAAG
TATCCCCTTAGAAATAACAGGGCTGGAGCATCCTCGATGATAGAAAATTGATATTTTAGAAAATT
AAACTAGGGTTGGAGTATCCCTGATGGCA
Found at i:99153 original size:15 final size:15
Alignment explanation
Indices: 99133--99162 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
99123 TTCAATTAAA
99133 TGCTTTATAAATTTT
1 TGCTTTATAAATTTT
99148 TGCTTTATAAATTTT
1 TGCTTTATAAATTTT
99163 GTACCAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.07, G:0.07, T:0.60
Consensus pattern (15 bp):
TGCTTTATAAATTTT
Found at i:101709 original size:21 final size:21
Alignment explanation
Indices: 101676--101720 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
101666 TTGCAAGTTG
*
101676 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
101698 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
101718 AAA
1 AAA
101721 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:105653 original size:13 final size:13
Alignment explanation
Indices: 105635--105660 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
105625 ACATTTTTCT
105635 TTGTATCGATACA
1 TTGTATCGATACA
105648 TTGTATCGATACA
1 TTGTATCGATACA
105661 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:108226 original size:13 final size:13
Alignment explanation
Indices: 108208--108233 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
108198 TACAGCAAGT
108208 ATGTATCGATACA
1 ATGTATCGATACA
108221 ATGTATCGATACA
1 ATGTATCGATACA
108234 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:112074 original size:19 final size:19
Alignment explanation
Indices: 112050--112087 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
112040 TTGCTTGGAT
112050 GTTTTTATGTTTT-TTGTTG
1 GTTTTTAT-TTTTCTTGTTG
*
112069 GTTTTTGTTTTTCTTGTTG
1 GTTTTTATTTTTCTTGTTG
112088 TTCTTCAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.03, C:0.03, G:0.21, T:0.74
Consensus pattern (19 bp):
GTTTTTATTTTTCTTGTTG
Found at i:113545 original size:22 final size:22
Alignment explanation
Indices: 113520--113565 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
113510 GATTATCTCT
113520 GATCAGAGAGTTATGATTTTTG
1 GATCAGAGAGTTATGATTTTTG
*
113542 GATCAGGGAGTTATGATTTTTG
1 GATCAGAGAGTTATGATTTTTG
113564 GA
1 GA
113566 AGTTCGGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.26, C:0.04, G:0.30, T:0.39
Consensus pattern (22 bp):
GATCAGAGAGTTATGATTTTTG
Found at i:114202 original size:27 final size:28
Alignment explanation
Indices: 114172--114243 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
114162 TTTTATTATC
114172 GGGGATACTCCAAACCC-GCTC-TTCTGA
1 GGGGATACTCCAAACCCTGCTCTTTC-GA
114199 GGGGATACTCC-AACCCTGCTCTTTCGA
1 GGGGATACTCCAAACCCTGCTCTTTCGA
114226 GGGGATACTCC-AACCCTG
1 GGGGATACTCCAAACCCTG
114244 TTTTTCTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 5 0.12
27 35 0.81
28 3 0.07
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.22
Consensus pattern (28 bp):
GGGGATACTCCAAACCCTGCTCTTTCGA
Found at i:116367 original size:14 final size:14
Alignment explanation
Indices: 116348--116391 Score: 88
Period size: 14 Copynumber: 3.1 Consensus size: 14
116338 CCATCAGGTG
116348 ATAGGGGCAAGCCA
1 ATAGGGGCAAGCCA
116362 ATAGGGGCAAGCCA
1 ATAGGGGCAAGCCA
116376 ATAGGGGCAAGCCA
1 ATAGGGGCAAGCCA
116390 AT
1 AT
116392 TGCATTAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.36, C:0.20, G:0.34, T:0.09
Consensus pattern (14 bp):
ATAGGGGCAAGCCA
Found at i:121546 original size:13 final size:13
Alignment explanation
Indices: 121505--121547 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
121495 ATACATTGTT
*
121505 CATTGTATCAATA
1 CATTGTATCGATA
* *
121518 CAATATATCGATA
1 CATTGTATCGATA
121531 CATTGTATCGATA
1 CATTGTATCGATA
121544 CATT
1 CATT
121548 TAGGCATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.37, C:0.16, G:0.09, T:0.37
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:123626 original size:28 final size:26
Alignment explanation
Indices: 123593--123663 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 26
123583 TTTCACAAAT
123593 GGGATACTCCAATCCCGTTATTTCATCGA
1 GGGATACTCCAA-CCCGTTATTTC-T-GA
123622 -GGATACTCCAACCCTGTTATTTCTGA
1 GGGATACTCCAACCC-GTTATTTCTGA
123648 GGGGATACTCCAACCC
1 -GGGATACTCCAACCC
123664 CGGCATTATT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
26 2 0.05
27 4 0.10
28 33 0.85
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GGGATACTCCAACCCGTTATTTCTGA
Found at i:123713 original size:51 final size:51
Alignment explanation
Indices: 123651--123763 Score: 154
Period size: 51 Copynumber: 2.2 Consensus size: 51
123641 TTTCTGAGGG
*
123651 GATACTCCAACCCCGGCATTATTTCCAAAATATTGATTTCTCACAATCGGA
1 GATACTCCAACCCCGGCATTATTTCCAAAACATTGATTTCTCACAATCGGA
** * * * * *
123702 GATACTCCAACCTTGGCCTTATTTCTAAAGCATTGATTTTTCACAATCGGG
1 GATACTCCAACCCCGGCATTATTTCCAAAACATTGATTTCTCACAATCGGA
123753 GATACTCCAAC
1 GATACTCCAAC
123764 AGCATTATTT
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (51 bp):
GATACTCCAACCCCGGCATTATTTCCAAAACATTGATTTCTCACAATCGGA
Found at i:123803 original size:79 final size:78
Alignment explanation
Indices: 123720--123919 Score: 208
Period size: 79 Copynumber: 2.5 Consensus size: 78
123710 AACCTTGGCC
* *
123720 TTATTTCTAAAGCATTGATTTT-TCACAATCGGGGATACTCCAACAGC-ATTATTT-TCGAGGGG
1 TTATTTCTAAA-CATTGATTTTCT-ATAATCGGGGATACTCCAAC-CCTATTATTTCT-GAGGGG
123782 ATACTCCAACCCCGATT
62 ATACTCCAACCCCGATT
* * ** ** *
123799 TTATTTTCAAAATATCAATTTTCTATAATCACGGATACTCCAACCCTGTTATTTCTGAGGGGATA
1 TTA-TTTCTAAACATTGATTTTCTATAATCGGGGATACTCCAACCCTATTATTTCTGAGGGGATA
*
123864 CTCCAACCCTGATT
65 CTCCAACCCCGATT
* * *
123878 TTATTTCCAAAACATCGATTTTCTATAATTGGGGATACTCCA
1 TTATTT-CTAAACATTGATTTTCTATAATCGGGGATACTCCA
123920 GCTCCGTTGT
Statistics
Matches: 101, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
78 4 0.04
79 88 0.87
80 9 0.09
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (78 bp):
TTATTTCTAAACATTGATTTTCTATAATCGGGGATACTCCAACCCTATTATTTCTGAGGGGATAC
TCCAACCCCGATT
Found at i:124699 original size:13 final size:13
Alignment explanation
Indices: 124681--124706 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
124671 ACACCAAAGT
124681 ATGTATCGATACA
1 ATGTATCGATACA
124694 ATGTATCGATACA
1 ATGTATCGATACA
124707 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:124704 original size:33 final size:33
Alignment explanation
Indices: 124662--124726 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
124652 TAGCCAAACT
* *
124662 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
124695 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
124727 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:130915 original size:13 final size:13
Alignment explanation
Indices: 130897--130935 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
130887 ACATTTTTCT
130897 TTGTATCGATACA
1 TTGTATCGATACA
130910 TTGTATCGATACA
1 TTGTATCGATACA
*
130923 CTGTATCGATACA
1 TTGTATCGATACA
130936 GGGGGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:132262 original size:38 final size:38
Alignment explanation
Indices: 132211--132287 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
132201 CCTATTTCTC
132211 GACCTCGCATCATCGGTTCCAAATCCATGGCCAAAATT
1 GACCTCGCATCATCGGTTCCAAATCCATGGCCAAAATT
132249 GACCTCGCATCATCGGTTCCAAATCCATGGCCAAAATT
1 GACCTCGCATCATCGGTTCCAAATCCATGGCCAAAATT
132287 G
1 G
132288 GCTATGTGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.23
Consensus pattern (38 bp):
GACCTCGCATCATCGGTTCCAAATCCATGGCCAAAATT
Found at i:133545 original size:13 final size:13
Alignment explanation
Indices: 133527--133552 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
133517 ACACCAAAGT
133527 ATGTATCGATACA
1 ATGTATCGATACA
133540 ATGTATCGATACA
1 ATGTATCGATACA
133553 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:133550 original size:33 final size:33
Alignment explanation
Indices: 133508--133572 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
133498 GTAGCCAACT
* *
133508 TGTATCGATACAC-CAAAGTATGTATCGATACAA
1 TGTATCGATACACAAAAAAT-TGTATCGATACAA
133541 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
133573 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:143108 original size:60 final size:61
Alignment explanation
Indices: 143014--143149 Score: 204
Period size: 60 Copynumber: 2.2 Consensus size: 61
143004 AAAAATGATG
* * * *
143014 AAGATGAGAAGAGTGATAAAGGTGCCAATATGCTGATTC-AGAGCTAGTGATATTGGGCTTA
1 AAGATGAGAAGAATGATAAAGGTGCCAATATGCTGATTCAAG-GCCAGCGATATTAGGCTTA
143075 AAGATGAGAA-AATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTA
1 AAGATGAGAAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTA
*
143135 AAGATGTGAAGAATG
1 AAGATGAGAAGAATG
143150 TCAATGTGCT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
60 52 0.76
61 16 0.24
ACGTcount: A:0.38, C:0.10, G:0.28, T:0.24
Consensus pattern (61 bp):
AAGATGAGAAGAATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTA
Found at i:143459 original size:202 final size:203
Alignment explanation
Indices: 143088--143524 Score: 543
Period size: 202 Copynumber: 2.2 Consensus size: 203
143078 ATGAGAAAAT
* * * *
143088 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGGCTTAAAGATGTGAAGAATGTCA
1 GATAAAGGTGCCAATATGCTGATTCAAAGCCAGCGACAGTAGGCTTAAAGA-GTGAAGAATGCCA
* * * * *
143153 ATGTGCTGATTCACGGCCAGCGATATTAGACTTGAAGATGAGAAGGATGCCAATTTGCTGATTCA
65 ATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAGAAGAATGCCAATGTGCTGATTCA
* * * * * * *
143218 AGGCTAGTGACGTTGGGCTTAGGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAATGATAT
130 AGGCTAGTGACATTGGACTCA-GAAGGTAAAAGATGCCAATATGCTGATTCAAGGCCAACGACAT
143283 CGGACTTAAA
194 CGGACTTAAA
* * *
143293 GATAAAGGTGCCAATGTGCTGATTCAAAGCCAGTGACAGT-GGACTTAAAGA-TGAAG-GTGCCA
1 GATAAAGGTGCCAATATGCTGATTCAAAGCCAGCGACAGTAGG-CTTAAAGAGTGAAGAATGCCA
*
143355 ATGTGCTGATTCAAGGCTAGCGACATTAGACTTAAAGATGAGAAGAATGCCAATGTGCTGATTCA
65 ATGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAGAAGAATGCCAATGTGCTGATTCA
* *
143420 AGGCTAGTGACATTGGACTCA-AAGGTGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACA
130 AGGCTAGTGACATTGGACTCAGAAGGT-AAAAG-ATGCCAATATGCTGATTCAAGGCCAACGACA
*
143484 TTGGAC-T---
193 TCGGACTTAAA
*
143491 --TAAAGGTGCCAATATGTTGATTCAAAGCCAGCGA
1 GATAAAGGTGCCAATATGCTGATTCAAAGCCAGCGA
143525 TATTGAGCTT
Statistics
Matches: 203, Mismatches: 26, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
196 31 0.15
200 4 0.02
201 5 0.02
202 113 0.56
203 5 0.02
204 2 0.01
205 43 0.21
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (203 bp):
GATAAAGGTGCCAATATGCTGATTCAAAGCCAGCGACAGTAGGCTTAAAGAGTGAAGAATGCCAA
TGTGCTGATTCAAGGCCAGCGACATTAGACTTAAAGATGAGAAGAATGCCAATGTGCTGATTCAA
GGCTAGTGACATTGGACTCAGAAGGTAAAAGATGCCAATATGCTGATTCAAGGCCAACGACATCG
GACTTAAA
Found at i:143498 original size:52 final size:51
Alignment explanation
Indices: 143086--143495 Score: 391
Period size: 52 Copynumber: 8.0 Consensus size: 51
143076 AGATGAGAAA
* * *
143086 ATGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTAGG-CTTAAAG
1 ATGA-AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAG
** * * * * *
143138 ATGTGAAGAATGTCAATGTGCTGATTCACGGCCAGCGATATTAGACTTGAAG
1 ATGAAAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * * * * * *
143190 ATGAGAAGGATGCCAATTTGCTGATTCAAGGCTAGTGACGTTGGGCTT-AGG
1 ATGA-AAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * ** * *
143241 AATGTTAAAGATGCCAATATGCTGATTCAAGGCCAATGATATCGGACTTAAAG
1 -ATG-AAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * * *
143294 AT--AAAGGTGCCAATGTGCTGATTCAAAGCCAGTGACAGTGGACTTAAAG
1 ATGAAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * *
143343 ATG--AAGGTGCCAATGTGCTGATTCAAGGCTAGCGACATTAGACTTAAAG
1 ATGAAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
* * * *
143392 ATGAGAAGAATGCCAATGTGCTGATTCAAGGCTAGTGACATTGGACTCAAAG
1 ATGAAAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
*
143444 GTGAAAAGAATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
1 ATGAAAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
143496 GTGCCAATAT
Statistics
Matches: 296, Mismatches: 52, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
49 86 0.29
51 9 0.03
52 197 0.67
53 4 0.01
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (51 bp):
ATGAAAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
Found at i:143551 original size:39 final size:40
Alignment explanation
Indices: 143454--143738 Score: 303
Period size: 39 Copynumber: 7.0 Consensus size: 40
143444 GTGAAAAGAA
*
143454 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT--A-G
* * *
143497 TGCCAATATGTTGATTCAAAGCCAGCGATATT-GAGCTT-G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGA-CTTAG
*
143536 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT--A-G
* * *
143579 TGCCAATATGTTGATTCAAAGCCAGCGATATT-GAGCTT-G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGA-CTTAG
*
143618 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT--A-G
* * *
143661 TGCCAATATGTTGATTCAAAGCCAGCGATATT-GAGCTT-G
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGA-CTTAG
*
143700 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA
143739 AAGATGACAA
Statistics
Matches: 203, Mismatches: 24, Indels: 33
0.78 0.09 0.13
Matches are distributed among these distances:
39 97 0.48
40 5 0.02
42 6 0.03
43 95 0.47
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (40 bp):
TGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAG
Found at i:143591 original size:82 final size:82
Alignment explanation
Indices: 143454--143741 Score: 558
Period size: 82 Copynumber: 3.5 Consensus size: 82
143444 GTGAAAAGAA
143454 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
143519 CAGCGATATTGAGCTTG
66 CAGCGATATTGAGCTTG
143536 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
143601 CAGCGATATTGAGCTTG
66 CAGCGATATTGAGCTTG
143618 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
143683 CAGCGATATTGAGCTTG
66 CAGCGATATTGAGCTTG
* *
143700 TGCCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
143742 ATGACAAAGG
Statistics
Matches: 204, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 204 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (82 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGGTGCCAATATGTTGATTCAAAGC
CAGCGATATTGAGCTTG
Found at i:143820 original size:51 final size:52
Alignment explanation
Indices: 143702--143833 Score: 160
Period size: 51 Copynumber: 2.6 Consensus size: 52
143692 TGAGCTTGTG
* *
143702 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGCG
1 CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAAGCA
* * * * *
143754 CCAATATGTTAATTCAAGGCCAGCGATATTGGAT-TT-AAGATGATAAAAGTA
1 CCAATATGCTGATTCAAGGCCAGCGACATTGG-TCTTAAAGATGACAAAAGCA
* *
143805 CCAATGTGCTGATTCAAGGCCAGTGACAT
1 CCAATATGCTGATTCAAGGCCAGCGACAT
143834 CAGACCTAAA
Statistics
Matches: 67, Mismatches: 12, Indels: 3
0.82 0.15 0.04
Matches are distributed among these distances:
51 35 0.52
52 31 0.46
53 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (52 bp):
CCAATATGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACAAAAGCA
Found at i:144042 original size:32 final size:33
Alignment explanation
Indices: 143903--144099 Score: 151
Period size: 34 Copynumber: 6.1 Consensus size: 33
143893 TGTGTGGGCT
* * *
143903 TTGAAAA-AAAAAGGTGCCATGAAGTTGTGGAC
1 TTGAAAAGGAAAAGGTGCCACGGAGTTGTGGAC
* *
143935 TT-AAAAGAAAAAAGGGTGCCACAGAGTTGTGGA-
1 TTGAAAAG-GAAAA-GGTGCCACGGAGTTGTGGAC
* * * *
143968 TT---TA--AAAAGGTGCCACAGAGTTATGGGC
1 TTGAAAAGGAAAAGGTGCCACGGAGTTGTGGAC
* * *
143996 TTTGCAAAGGAAAAGGTGCCATGGAATTGTGGAC
1 -TTGAAAAGGAAAAGGTGCCACGGAGTTGTGGAC
* *
144030 TT-AAAAGGAAAAGGTGCCACAGAGTTGTGGGC
1 TTGAAAAGGAAAAGGTGCCACGGAGTTGTGGAC
*
144062 TTTGAAAAGAAAAAGGTTGCCACGGAGTTGTGGAC
1 -TTGAAAAGGAAAAGG-TGCCACGGAGTTGTGGAC
144097 TTG
1 TTG
144100 GAGAAAAGAT
Statistics
Matches: 132, Mismatches: 20, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
27 17 0.13
28 4 0.03
29 2 0.02
31 5 0.04
32 28 0.21
33 11 0.08
34 49 0.37
35 16 0.12
ACGTcount: A:0.36, C:0.11, G:0.31, T:0.22
Consensus pattern (33 bp):
TTGAAAAGGAAAAGGTGCCACGGAGTTGTGGAC
Found at i:144061 original size:66 final size:67
Alignment explanation
Indices: 143972--144098 Score: 202
Period size: 66 Copynumber: 1.9 Consensus size: 67
143962 TGTGGATTTA
* * *
143972 AAAAGGTGCCACAGAGTTATGGGCTTTGCAAAGGAAAAGG-TGCCATGGAATTGTGGACTTAAAA
1 AAAAGGTGCCACAGAGTTATGGGCTTTGAAAAGAAAAAGGTTGCCACGGAATTGTGGACTTAAAA
144036 GG
66 GG
* *
144038 AAAAGGTGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGGTTGCCACGGAGTTGTGGACTT
1 AAAAGGTGCCACAGAGTTATGGGCTTTGAAAAGAAAAAGGTTGCCACGGAATTGTGGACTT
144099 GGAGAAAAGA
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
66 37 0.67
67 18 0.33
ACGTcount: A:0.33, C:0.13, G:0.32, T:0.22
Consensus pattern (67 bp):
AAAAGGTGCCACAGAGTTATGGGCTTTGAAAAGAAAAAGGTTGCCACGGAATTGTGGACTTAAAA
GG
Found at i:145396 original size:8 final size:7
Alignment explanation
Indices: 145383--145427 Score: 51
Period size: 6 Copynumber: 6.7 Consensus size: 7
145373 CCTTTGCATT
145383 TTTTTTGG
1 TTTTTT-G
145391 TTTTTTG
1 TTTTTTG
145398 -TTTTT-
1 TTTTTTG
145403 TTTTTTG
1 TTTTTTG
145410 TTTTTT-
1 TTTTTTG
*
145416 TTTTGTG
1 TTTTTTG
145423 TTTTT
1 TTTTT
145428 GCTTTTGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
6 15 0.47
7 11 0.34
8 6 0.19
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTTTG
Found at i:145397 original size:19 final size:19
Alignment explanation
Indices: 145375--145415 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
145365 TGATTTTGCC
145375 TTTGCATTTTTTTTGGTTT
1 TTTGCATTTTTTTTGGTTT
** *
145394 TTTGTTTTTTTTTTTGTTT
1 TTTGCATTTTTTTTGGTTT
145413 TTT
1 TTT
145416 TTTTGTGTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.83
Consensus pattern (19 bp):
TTTGCATTTTTTTTGGTTT
Found at i:145424 original size:13 final size:12
Alignment explanation
Indices: 145391--145441 Score: 66
Period size: 12 Copynumber: 4.1 Consensus size: 12
145381 TTTTTTTTGG
145391 TTTTTTGTTTTT
1 TTTTTTGTTTTT
145403 TTTTTTGTTTTT
1 TTTTTTGTTTTT
145415 TTTTTGTGTTTTT
1 TTTTT-TGTTTTT
**
145428 GCTTTTGATTTTT
1 TTTTTTG-TTTTT
145441 T
1 T
145442 CATCATTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
12 19 0.56
13 15 0.44
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:145426 original size:19 final size:19
Alignment explanation
Indices: 145392--145441 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
145382 TTTTTTTGGT
145392 TTTTTGTTTTTT-TTTTTG
1 TTTTTGTTTTTTGTTTTTG
145410 TTTTT-TTTTTGTGTTTTTG
1 TTTTTGTTTTT-TGTTTTTG
*
145429 CTTTTGATTTTTT
1 TTTTTG-TTTTTT
145442 CATCATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 5 0.19
18 6 0.22
19 10 0.37
20 1 0.04
21 5 0.19
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (19 bp):
TTTTTGTTTTTTGTTTTTG
Found at i:145433 original size:25 final size:23
Alignment explanation
Indices: 145391--145441 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
145381 TTTTTTTTGG
* *
145391 TTTTTTGTTTTTTTTTTTGTTTT
1 TTTTTTGTTTTTTCTTTTGATTT
145414 TTTTTTGTGTTTTTGCTTTTGATTT
1 TTTTTTGT-TTTTT-CTTTTGATTT
145439 TTT
1 TTT
145442 CATCATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 8 0.33
24 5 0.21
25 11 0.46
ACGTcount: A:0.02, C:0.02, G:0.12, T:0.84
Consensus pattern (23 bp):
TTTTTTGTTTTTTCTTTTGATTT
Found at i:148136 original size:13 final size:13
Alignment explanation
Indices: 148101--148137 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
148091 AAGGATCTTA
*
148101 GTATCGATACACT
1 GTATCGATATACT
*
148114 GTATCGATATATT
1 GTATCGATATACT
148127 GTATCGATATA
1 GTATCGATATA
148138 AAGGCACTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38
Consensus pattern (13 bp):
GTATCGATATACT
Found at i:150111 original size:20 final size:20
Alignment explanation
Indices: 150055--150113 Score: 68
Period size: 19 Copynumber: 3.0 Consensus size: 20
150045 TTTGAAACAA
150055 AAAGAGGGAGAAATATTTTTC
1 AAAGAGGGAGAAA-ATTTTTC
* *
150076 AAAAAGGAAG-AAATTTTAT-
1 AAAGAGGGAGAAAATTTT-TC
150095 AAAGAGGGAGAAAATTTTT
1 AAAGAGGGAGAAAATTTTT
150114 TTATTAAGGG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 14 0.44
20 10 0.31
21 8 0.25
ACGTcount: A:0.49, C:0.02, G:0.22, T:0.27
Consensus pattern (20 bp):
AAAGAGGGAGAAAATTTTTC
Found at i:150135 original size:22 final size:23
Alignment explanation
Indices: 150089--150136 Score: 71
Period size: 23 Copynumber: 2.1 Consensus size: 23
150079 AAGGAAGAAA
*
150089 TTTTATAAAGAGGGAGAAAATTT
1 TTTTATTAAGAGGGAGAAAATTT
150112 TTTTATTAAG-GGCGAGAAAATTT
1 TTTTATTAAGAGG-GAGAAAATTT
150135 TT
1 TT
150137 AATTAAAGGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 2 0.09
23 21 0.91
ACGTcount: A:0.38, C:0.02, G:0.21, T:0.40
Consensus pattern (23 bp):
TTTTATTAAGAGGGAGAAAATTT
Found at i:150145 original size:23 final size:23
Alignment explanation
Indices: 150094--150149 Score: 71
Period size: 23 Copynumber: 2.4 Consensus size: 23
150084 AGAAATTTTA
*
150094 TAAAGAGGGAGAAAATTTTTTTAT
1 TAAAG-GGGAGAAAATTTTTTAAT
150118 T-AAGGGCGAGAAAA-TTTTTAAT
1 TAAAGGG-GAGAAAATTTTTTAAT
150140 TAAAGGGGAG
1 TAAAGGGGAG
150150 TTATGTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
22 13 0.45
23 15 0.52
24 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.27, T:0.30
Consensus pattern (23 bp):
TAAAGGGGAGAAAATTTTTTAAT
Found at i:150876 original size:20 final size:20
Alignment explanation
Indices: 150851--150904 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
150841 CTACCATTAT
* *
150851 TTGTATCGATACATGGTACA
1 TTGTATCGATACATAGTAAA
150871 TTGTATCGATACATAGTAAA
1 TTGTATCGATACATAGTAAA
**
150891 AAGTATCGATACAT
1 TTGTATCGATACAT
150905 TGTGCTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
TTGTATCGATACATAGTAAA
Found at i:152764 original size:39 final size:41
Alignment explanation
Indices: 152694--152837 Score: 121
Period size: 42 Copynumber: 3.5 Consensus size: 41
152684 CTTTATAGCA
* **
152694 CCTTTTAGTCCTCAAAGAGCAACACTAATTTC-CTT-CTTTT
1 CCTTTT-GTCCTCAAAGAGCAAGACGCATTTCACTTCCTTTT
* *
152734 CCTTTTGTCCTCAAAGAGCAGGACGCATTTCATTTCCTTTT
1 CCTTTTGTCCTCAAAGAGCAAGACGCATTTCACTTCCTTTT
* * * * * *
152775 CTCCTTTGTCCTTAAAGAGCATGATGCATTTTATTCTCCTTTT
1 C-CTTTTGTCCTCAAAGAGCAAGACGCATTTCACT-TCCTTTT
* * *
152818 CCCTTTGTCTTCAAGGAGCA
1 CCTTTTGTCCTCAAAGAGCA
152838 GGATGCTTTC
Statistics
Matches: 87, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
39 21 0.24
40 8 0.09
41 6 0.07
42 44 0.51
43 8 0.09
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.40
Consensus pattern (41 bp):
CCTTTTGTCCTCAAAGAGCAAGACGCATTTCACTTCCTTTT
Found at i:152843 original size:42 final size:41
Alignment explanation
Indices: 152729--152847 Score: 143
Period size: 42 Copynumber: 2.9 Consensus size: 41
152719 TAATTTCCTT
* * *
152729 CTTTTCCTTTTGTCCTCAAAGAGCAGGACGCATTTCATTTC
1 CTTTTCCCTTTGTCTTCAAAGAGCAGGATGCATTTCATTTC
* *
152770 CTTTTCTCCTTTGTCCTT-AAAGAGCATGATGCATTTTATTCTC
1 CTTTTC-CCTTTGT-CTTCAAAGAGCAGGATGCATTTCATT-TC
*
152813 CTTTTCCCTTTGTCTTCAAGGAGCAGGATGC-TTTC
1 CTTTTCCCTTTGTCTTCAAAGAGCAGGATGCATTTC
152848 TTTTTTCCCT
Statistics
Matches: 66, Mismatches: 8, Indels: 8
0.80 0.10 0.10
Matches are distributed among these distances:
41 12 0.18
42 44 0.67
43 10 0.15
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (41 bp):
CTTTTCCCTTTGTCTTCAAAGAGCAGGATGCATTTCATTTC
Found at i:153252 original size:87 final size:87
Alignment explanation
Indices: 153106--153304 Score: 328
Period size: 87 Copynumber: 2.3 Consensus size: 87
153096 TACTCGAGTT
* * *
153106 AAAGCTCACACGAGTTAGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
1 AAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
* *
153171 GGAGGTTAAAG-CTTAGAATGTC
66 AGAGGTT-AAGCCTTAGAATGCC
153193 AAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
1 AAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
153258 AGAGGTTAAGCCTTAGAATGCC
66 AGAGGTTAAGCCTTAGAATGCC
*
153280 AAAGCCCACATGAGTTGGTGGCACC
1 AAAGCCCACACGAGTTGGTGGCACC
153305 CCAATCAAAG
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
86 3 0.03
87 102 0.97
ACGTcount: A:0.30, C:0.23, G:0.24, T:0.24
Consensus pattern (87 bp):
AAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
AGAGGTTAAGCCTTAGAATGCC
Found at i:153406 original size:118 final size:118
Alignment explanation
Indices: 153191--153421 Score: 363
Period size: 118 Copynumber: 2.0 Consensus size: 118
153181 GCTTAGAATG
* * **
153191 TCAAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCT
1 TCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
* *
153256 AAAGAGGTTAAGCCTTAGAATGCCAAAGCCCACATGAGTTGGTGGCACCCCAA
66 AAAGAGGTTAAGCCTTAGAATGCCAAAACCCACACGAGTTGGTGGCACCCCAA
* *
153309 TCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTATTTGGCACCTGTCT
1 TCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
* * *
153374 AAGGAGGTTAAGGCTTAGAATGTCAAAACCCACACGAGTTGGTGGCAC
66 AAAGAGGTTAAGCCTTAGAATGCCAAAACCCACACGAGTTGGTGGCAC
153422 TTAAGTCTGA
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
118 102 1.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.21
Consensus pattern (118 bp):
TCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
AAAGAGGTTAAGCCTTAGAATGCCAAAACCCACACGAGTTGGTGGCACCCCAA
Found at i:153429 original size:205 final size:205
Alignment explanation
Indices: 153106--153540 Score: 717
Period size: 205 Copynumber: 2.1 Consensus size: 205
153096 TACTCGAGTT
* * * * ***
153106 AAAGCTCACACGAGTTAGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
1 AAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCTAA
*
153171 GGAGGTTAAAGCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCC
66 GGAGGTTAAAGCTTAGAATGTCAAAACCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCC
*
153236 ACATTAGTTGGCACCTATCTAAAGAGGTTAAGCCTTAGAATGCCAAAGCCCACATGAGTTGGTGG
131 ACATTAGTTGGCACCTATCTAAAGAGGTTAAGCCTTAGAATGCCAAAGCCCACACGAGTTGGTGG
153301 CACCCCAATC
196 CACCCCAATC
* *
153311 AAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTATTTGGCACCTGTCTAA
1 AAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCTAA
* *
153376 GGAGGTTAAGGCTTAGAATGTCAAAACCCACACGAGTTGGTGGCACTTAAGTCTGAGTCAAGTCC
66 GGAGGTTAAAGCTTAGAATGTCAAAACCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCC
* * *
153441 ATATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGG
131 ACATTAGTTGGCACCTATCTAAAGAGGTTAAGCCTTAGAATGCCAAAGCCCACACGAGTTGGTGG
*
153506 CACCCCAGTC
196 CACCCCAATC
153516 AAAGCCCACACAAGTTGGCGGCACC
1 AAAGCCCACACAAGTTGGCGGCACC
153541 CGAGTCAAAG
Statistics
Matches: 213, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
205 213 1.00
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (205 bp):
AAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCTAA
GGAGGTTAAAGCTTAGAATGTCAAAACCCACACGAGTTGGTGGCACCTAAGTCTGAGTCAAGTCC
ACATTAGTTGGCACCTATCTAAAGAGGTTAAGCCTTAGAATGCCAAAGCCCACACGAGTTGGTGG
CACCCCAATC
Found at i:153455 original size:87 final size:87
Alignment explanation
Indices: 153309--153509 Score: 312
Period size: 87 Copynumber: 2.3 Consensus size: 87
153299 GGCACCCCAA
* * * *
153309 TCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCAAGTCAAGTCCACATTATTTGGCACCTGTCT
1 TCAAAGCCCACACGAGTTGGTGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
*
153374 AAGGAGGTTAAGGCTTAGAATG
66 AAGGAGGTTAAGCCTTAGAATG
* * ** *
153396 TCAAAACCCACACGAGTTGGTGGCACTTAAGTCTGAGTCAAGTCCATATTAGTTGGCACCTATCT
1 TCAAAGCCCACACGAGTTGGTGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
153461 AAGGAGGTTAAGCCTTAGAATG
66 AAGGAGGTTAAGCCTTAGAATG
153483 TCAAAGCCCACACGAGTTGGTGGCACC
1 TCAAAGCCCACACGAGTTGGTGGCACC
153510 CCAGTCAAAG
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
87 102 1.00
ACGTcount: A:0.29, C:0.24, G:0.23, T:0.23
Consensus pattern (87 bp):
TCAAAGCCCACACGAGTTGGTGGCACCTAAGTCCAAGTCAAGTCCACATTAGTTGGCACCTATCT
AAGGAGGTTAAGCCTTAGAATG
Found at i:153520 original size:31 final size:31
Alignment explanation
Indices: 153482--153571 Score: 144
Period size: 31 Copynumber: 2.9 Consensus size: 31
153472 GCCTTAGAAT
153482 GTCAAAGCCCACACGAGTTGGTGGCACCCCA
1 GTCAAAGCCCACACGAGTTGGTGGCACCCCA
* * *
153513 GTCAAAGCCCACACAAGTTGGCGGCACCCGA
1 GTCAAAGCCCACACGAGTTGGTGGCACCCCA
*
153544 GTCAAAGCCCACACGAGTTGATGGCACC
1 GTCAAAGCCCACACGAGTTGGTGGCACC
153572 TAAGTCTGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.28, C:0.34, G:0.26, T:0.12
Consensus pattern (31 bp):
GTCAAAGCCCACACGAGTTGGTGGCACCCCA
Found at i:153690 original size:87 final size:87
Alignment explanation
Indices: 153544--153745 Score: 350
Period size: 87 Copynumber: 2.3 Consensus size: 87
153534 CGGCACCCGA
153544 GTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATC
1 GTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATC
* *
153609 TAAGAATGTTAAGCTTTAGAAT
66 TAAGAAGGTTAAGCCTTAGAAT
* *
153631 GTCAAAGCCCACAAGAGTTGATGGCATCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATC
1 GTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATC
*
153696 TAAGGAGGTTAAGCCTTAGAAT
66 TAAGAAGGTTAAGCCTTAGAAT
*
153718 GTCAAAGCCCACACGAGTTGGTGGCACC
1 GTCAAAGCCCACACGAGTTGATGGCACC
153746 CTAGTCAAAG
Statistics
Matches: 107, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
87 107 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (87 bp):
GTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATC
TAAGAAGGTTAAGCCTTAGAAT
Found at i:153692 original size:236 final size:235
Alignment explanation
Indices: 153279--153893 Score: 901
Period size: 236 Copynumber: 2.6 Consensus size: 235
153269 CTTAGAATGC
** * ** **
153279 CAAAGCCCACATGAGTTGGTGGCACCCCAATCAAAGCCCACACAAGTTGGCGGCACCTAAGTCCA
1 CAAAGCCCACACAAGTTGGTGGCACCCGAATCAAAGCCCACACAAGTTGATGGCACCTAAGTCTG
* * * * *
153344 AGTCAAGTCCACATTATTTGGCACCTGTCTAAGGAGGTTAAGGCTTAGAATGTCAAAACCCACAC
66 AGTCAAGTCCACATTAGTTGGCACCTATCTAAGAAGGTTAA-GCTTAGAATGTCAAAGCCCACAA
* *
153409 GAGTTGGTGGCACTTAAGTCTGAGTCAAGTCCATATTAGTTGGCACCTATCTAAGGAGGTTAAGC
130 GAGTTGATGGCACTTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGC
153474 CTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGT
195 CTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGT
* * *
153515 CAAAGCCCACACAAGTTGGCGGCACCCGAGTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTG
1 CAAAGCCCACACAAGTTGGTGGCACCCGAATCAAAGCCCACACAAGTTGATGGCACCTAAGTCTG
*
153580 AGTCAAGTCCACATTAGTTGGCACCTATCTAAGAATGTTAAGCTTTAGAATGTCAAAGCCCACAA
66 AGTCAAGTCCACATTAGTTGGCACCTATCTAAGAAGGTTAAGC-TTAGAATGTCAAAGCCCACAA
153645 GAGTTGATGGCA-TCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAG
130 GAGTTGATGGCACT-TAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAG
*
153709 CCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGT
194 CCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGT
* * * *
153751 CAAAGCCCACACAAGTTGGTGGCACTCGACTCAAAGCCCACACAAGTTGCTGGCACCTAAGTTTG
1 CAAAGCCCACACAAGTTGGTGGCACCCGAATCAAAGCCCACACAAGTTGATGGCACCTAAGTCTG
* ** *
153816 AGTAAAGTCCACATTAGTTGGCACCCCTCTAA-AGGGGTTAAGCCTTAGAATGTCAAAGCCCACA
66 AGTCAAGTCCACATTAGTTGGCACCTATCTAAGA-AGGTTAAG-CTTAGAATGTCAAAGCCCACA
** *
153880 CTAGTTGGTGGCAC
129 AGAGTTGATGGCAC
153894 CCTAGTCAAA
Statistics
Matches: 341, Mismatches: 33, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
235 4 0.01
236 336 0.99
237 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.23, T:0.22
Consensus pattern (235 bp):
CAAAGCCCACACAAGTTGGTGGCACCCGAATCAAAGCCCACACAAGTTGATGGCACCTAAGTCTG
AGTCAAGTCCACATTAGTTGGCACCTATCTAAGAAGGTTAAGCTTAGAATGTCAAAGCCCACAAG
AGTTGATGGCACTTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCC
TTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGT
Found at i:153756 original size:31 final size:31
Alignment explanation
Indices: 153718--153807 Score: 135
Period size: 31 Copynumber: 2.9 Consensus size: 31
153708 GCCTTAGAAT
* *
153718 GTCAAAGCCCACACGAGTTGGTGGCACCCTA
1 GTCAAAGCCCACACAAGTTGGTGGCACCCGA
*
153749 GTCAAAGCCCACACAAGTTGGTGGCACTCGA
1 GTCAAAGCCCACACAAGTTGGTGGCACCCGA
* *
153780 CTCAAAGCCCACACAAGTTGCTGGCACC
1 GTCAAAGCCCACACAAGTTGGTGGCACC
153808 TAAGTTTGAG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 53 1.00
ACGTcount: A:0.28, C:0.33, G:0.23, T:0.16
Consensus pattern (31 bp):
GTCAAAGCCCACACAAGTTGGTGGCACCCGA
Found at i:153789 original size:149 final size:148
Alignment explanation
Indices: 153632--154040 Score: 608
Period size: 149 Copynumber: 2.8 Consensus size: 148
153622 CTTTAGAATG
*
153632 TCAAAGCCCACAAGAGTTGATGGCATCTAAGTCTGAGTCAAGTCCACATTAGTTGGCACCTATCT
1 TCAAAGCCCACAAGAGTTGATGGCACCTAAGT-TGAGTCAAGTCCACATTAGTTGGCACCTATCT
153697 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCACA
65 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCACA
*
153762 CAAGTTGGTGGCA-CTCGAC
130 CAAGTTGGCGGCACCT-GAC
* * **
153781 TCAAAGCCCACACA-AGTTGCTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCCCTC
1 TCAAAGCCCACA-AGAGTTGATGGCACCTAAG-TTGAGTCAAGTCCACATTAGTTGGCACCTATC
* *
153845 TAAAGG-GGTTAAGCCTTAGAATGTCAAAGCCCACACTAGTTGGTGGCACCCTAGTCAAAGCCCG
64 T-AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCA
*
153909 CACAAGTTGGCGGCACCTGAG
128 CACAAGTTGGCGGCACCTGAC
* * *
153930 TCAAAGCCCACACGAGTTGGTGGCACCTAAGTTGTGTCAAGTCCACATTAGTTGGCACCTATCTA
1 TCAAAGCCCACAAGAGTTGATGGCACCTAAGTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
* * * *
153995 AGGAGGTTAAGCCTTCGAATGCCAAAGTCCACATGAGTTGGTGGCA
66 AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCA
154041 TCTAAGTTCG
Statistics
Matches: 234, Mismatches: 20, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
147 4 0.02
148 66 0.28
149 156 0.67
150 8 0.03
ACGTcount: A:0.28, C:0.26, G:0.24, T:0.22
Consensus pattern (148 bp):
TCAAAGCCCACAAGAGTTGATGGCACCTAAGTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCACAC
AAGTTGGCGGCACCTGAC
Found at i:153957 original size:31 final size:30
Alignment explanation
Indices: 153867--153958 Score: 130
Period size: 31 Copynumber: 3.0 Consensus size: 30
153857 GCCTTAGAAT
*
153867 GTCAAAGCCCACACTAGTTGGTGGCACCCTA
1 GTCAAAGCCCACACAAGTTGGTGGCA-CCTA
* *
153898 GTCAAAGCCCGCACAAGTTGGCGGCACCTGA
1 GTCAAAGCCCACACAAGTTGGTGGCACCT-A
*
153929 GTCAAAGCCCACACGAGTTGGTGGCACCTA
1 GTCAAAGCCCACACAAGTTGGTGGCACCTA
153959 AGTTGTGTCA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
30 4 0.07
31 50 0.93
ACGTcount: A:0.26, C:0.32, G:0.26, T:0.16
Consensus pattern (30 bp):
GTCAAAGCCCACACAAGTTGGTGGCACCTA
Found at i:154081 original size:87 final size:86
Alignment explanation
Indices: 153931--154129 Score: 326
Period size: 87 Copynumber: 2.3 Consensus size: 86
153921 GCACCTGAGT
*
153931 CAAAGCCCACACGAGTTGGTGGCACCTAAGTTGTGTCAAGTCCACATTAGTTGGCACCTATCTAA
1 CAAAGCCCACACGAGTTGGTGGCACCTAAGTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
*
153996 GGAGGTTAAGCCTTCGAATGC
66 GGAGGTTAAGCCTTAGAATGC
* * * *
154017 CAAAGTCCACATGAGTTGGTGGCATCTAAGTTCGAGTCAAGTCCATATTAGTTGGCACCTATCTA
1 CAAAGCCCACACGAGTTGGTGGCACCTAAGTT-GAGTCAAGTCCACATTAGTTGGCACCTATCTA
*
154082 AGGAGGTTAAGCCTTAGAATGT
65 AGGAGGTTAAGCCTTAGAATGC
154104 CAAAGCCCACACGAGTTGGTGGCACC
1 CAAAGCCCACACGAGTTGGTGGCACC
154130 CCAGTCAAAG
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
86 29 0.28
87 73 0.72
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (86 bp):
CAAAGCCCACACGAGTTGGTGGCACCTAAGTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAA
GGAGGTTAAGCCTTAGAATGC
Found at i:154092 original size:235 final size:236
Alignment explanation
Indices: 153782--154274 Score: 704
Period size: 235 Copynumber: 2.1 Consensus size: 236
153772 GCACTCGACT
* * * *
153782 CAAAGCCCACACAAGTTGCTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCCCTCTA
1 CAAAGCCCACACGAGTTGGTGGCACCTAAGTTCGAGTAAAGTCCACATTAGTTGGCACCCATCTA
* *
153847 AAGGGGTTAAGCCTTAGAATGTCAAAGCCCACACTAGTTGGTGGCACCCTAGTCAAAGCCCGCAC
66 AAGGGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAC
* * *
153912 AAGTTGGCGGCACCT-GAGTCAAAGCCCACACGAGTTGGTGGCACCTAAG-TTGTGTCAAGTCCA
131 AAGTTGGCGGC-CCTCGAGTCAAAGCCCACACAAATTGGTGGCACCTAAGTTTGAGTCAAGTCCA
* *
153975 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTCGAATGC
195 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATAC
* * * * * *
154017 CAAAGTCCACATGAGTTGGTGGCATCTAAGTTCGAGTCAAGTCCATATTAGTTGGCACCTATCT-
1 CAAAGCCCACACGAGTTGGTGGCACCTAAGTTCGAGTAAAGTCCACATTAGTTGGCACCCATCTA
154081 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCA
66 AAGG-GGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCA
* * * * * *
154146 TAAGTTGGTGGCTCTCGAGTCAAAGCCTAGACAAATTGGTGGCACCTAAGTTTGAGTTAAGTCCA
130 CAAGTTGGCGGCCCTCGAGTCAAAGCCCACACAAATTGGTGGCACCTAAGTTTGAGTCAAGTCCA
* * *
154211 CATTAGTTGGCACTTCTCTAAGGAGGTTAAGCCTTAGAATAT
195 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATAC
*
154253 GAAAGCCCACACGAGTTGGTGG
1 CAAAGCCCACACGAGTTGGTGG
154275 TACCCTAGTC
Statistics
Matches: 226, Mismatches: 29, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
234 6 0.03
235 152 0.67
236 68 0.30
ACGTcount: A:0.28, C:0.24, G:0.25, T:0.24
Consensus pattern (236 bp):
CAAAGCCCACACGAGTTGGTGGCACCTAAGTTCGAGTAAAGTCCACATTAGTTGGCACCCATCTA
AAGGGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAC
AAGTTGGCGGCCCTCGAGTCAAAGCCCACACAAATTGGTGGCACCTAAGTTTGAGTCAAGTCCAC
ATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATAC
Found at i:154138 original size:384 final size:384
Alignment explanation
Indices: 153396--154484 Score: 1700
Period size: 384 Copynumber: 2.8 Consensus size: 384
153386 GCTTAGAATG
* * * * * * *
153396 TCAAAACCCACACGAGTTGGTGGCACTTAAGTCTGAGTCAAGTCCATATTAGTTGGCACCTATCT
1 TCAAAGCCCACACAAGTTGGTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCTCTCT
* *
153461 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCACA
66 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCGCA
* *
153526 CAAGTTGGCGGCACCCGAGTCAAAGCCCACACGAGTTGATGGCACCTAAGTCTGAGTCAAGTCCA
131 CAAGTTGGCGGCACCTGAGTCAAAGCCCACACGAGTTGGTGGCACCTAAGT-TGAGTCAAGTCCA
* * * * *
153591 CATTAGTTGGCACCTATCTAAGAATGTTAAGCTTTAGAATGTCAAAGCCCACAAGAGTTGATGGC
195 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCAAAGTCCACAAGAGTTGGTGGC
153656 ATCTAAG-TCTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGT
260 ATCTAAGTTC-GAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGT
*
153720 CAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCACACAAGTTGGTGGCACTCGAC
324 CAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCACACAAGTTGGTGGCACTCGAC
* *
153781 TCAAAGCCCACACAAGTTGCTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCCCTCT
1 TCAAAGCCCACACAAGTTGGTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCTCTCT
*
153846 AAAGG-GGTTAAGCCTTAGAATGTCAAAGCCCACACTAGTTGGTGGCACCCTAGTCAAAGCCCGC
66 -AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCGC
*
153910 ACAAGTTGGCGGCACCTGAGTCAAAGCCCACACGAGTTGGTGGCACCTAAGTTGTGTCAAGTCCA
130 ACAAGTTGGCGGCACCTGAGTCAAAGCCCACACGAGTTGGTGGCACCTAAGTTGAGTCAAGTCCA
* * *
153975 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTCGAATGCCAAAGTCCACATGAGTTGGTGGC
195 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCAAAGTCCACAAGAGTTGGTGGC
*
154040 ATCTAAGTTCGAGTCAAGTCCATATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTC
260 ATCTAAGTTCGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTC
* * * *
154105 AAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCATAAGTTGGTGGCTCTCGAG
325 AAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCACACAAGTTGGTGGCACTCGAC
* * * * *
154165 TCAAAGCCTAGACAAATTGGTGGCACCTAAGTTTGAGTTAAGTCCACATTAGTTGGCACTTCTCT
1 TCAAAGCCCACACAAGTTGGTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCTCTCT
* * * *
154230 AAGGAGGTTAAGCCTTAGAATATGAAAGCCCACACGAGTTGGTGGTACCCTAGTCAAAGCCTGCA
66 AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCGCA
*
154295 C-AGTTGGCGGCACCTGAGTCAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCA
131 CAAGTTGGCGGCACCTGAGTCAAAGCCCACACGAGTTGGTGGCACCTAAG-TTGAGTCAAGTCCA
* * * *
154359 CATTAGTTGGCACCTGTCTAAAGAGGTCAAGCCTTAGAATGTCAAAGTCCACGCA-AGTTGGTGG
195 CATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCAAAGTCCAC-AAGAGTTGGTGG
* *
154423 CACCTAAGTTCGAGTCAAGTCTACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAA
259 CATCTAAGTTCGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAA
154485 AACTAAAACC
Statistics
Matches: 646, Mismatches: 53, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
383 51 0.08
384 427 0.66
385 164 0.25
386 4 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (384 bp):
TCAAAGCCCACACAAGTTGGTGGCACCTAAGTTTGAGTAAAGTCCACATTAGTTGGCACCTCTCT
AAGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCTAGTCAAAGCCCGCA
CAAGTTGGCGGCACCTGAGTCAAAGCCCACACGAGTTGGTGGCACCTAAGTTGAGTCAAGTCCAC
ATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCAAAGTCCACAAGAGTTGGTGGCA
TCTAAGTTCGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTTAGAATGTCA
AAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCACACAAGTTGGTGGCACTCGAC
Found at i:154140 original size:31 final size:31
Alignment explanation
Indices: 154102--154191 Score: 99
Period size: 31 Copynumber: 2.9 Consensus size: 31
154092 GCCTTAGAAT
*
154102 GTCAAAGCCCACACGAGTTGGTGGCACCCCA
1 GTCAAAGCCCACACAAGTTGGTGGCACCCCA
* * * * *
154133 GTCAAAGCCCGCATAAGTTGGTGGCTCTCGA
1 GTCAAAGCCCACACAAGTTGGTGGCACCCCA
* * *
154164 GTCAAAGCCTAGACAAATTGGTGGCACC
1 GTCAAAGCCCACACAAGTTGGTGGCACC
154192 TAAGTTTGAG
Statistics
Matches: 46, Mismatches: 13, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.27, C:0.29, G:0.27, T:0.18
Consensus pattern (31 bp):
GTCAAAGCCCACACAAGTTGGTGGCACCCCA
Found at i:154287 original size:149 final size:148
Alignment explanation
Indices: 154032--154426 Score: 540
Period size: 148 Copynumber: 2.7 Consensus size: 148
154022 TCCACATGAG
* * *
154032 TTGGTGGCATCTAAGTTCGAGTCAAGTCCATATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTT
1 TTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTT
* *
154097 AGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCATAAGTTGGTGGC-TCT
66 AGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCA-AAGTTGGCGGCACCT
* *
154161 CGAGTCAAAGCCTAGACAAA
130 -GAGTCAAAGCCCACACAAA
* * *
154181 TTGGTGGCACCTAAGTTTGAGTTAAGTCCACATTAGTTGGCACTTCTCTAAGGAGGTTAAGCCTT
1 TTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTT
* * * * * *
154246 AGAATATGAAAGCCCACACGAGTTGGTGGTACCCTAGTCAAAGCCTGCACAGTTGGCGGCACCTG
66 AGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAAAGTTGGCGGCACCTG
** *
154311 AGTCAAAGCCCACATGAG
131 AGTCAAAGCCCACACAAA
* * *
154329 TTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTGTCTAAAGAGGTCAAGCCTT
1 TTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTT
* * *
154394 AGAATGTCAAAGTCCACGCAAGTTGGTGGCACC
66 AGAATGTCAAAGCCCACACGAGTTGGTGGCACC
154427 TAAGTTCGAG
Statistics
Matches: 215, Mismatches: 30, Indels: 3
0.87 0.12 0.01
Matches are distributed among these distances:
148 110 0.51
149 105 0.49
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.24
Consensus pattern (148 bp):
TTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTAAGGAGGTTAAGCCTT
AGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAAAGTTGGCGGCACCTG
AGTCAAAGCCCACACAAA
Found at i:154338 original size:31 final size:29
Alignment explanation
Indices: 154254--154341 Score: 95
Period size: 30 Copynumber: 2.9 Consensus size: 29
154244 TTAGAATATG
*
154254 AAAGCCCACACGAGTTGGTGGTACCCTAGTC
1 AAAGCCCACA-GAGTTGGTGGCA-CCTAGTC
** * *
154285 AAAGCCTGCACAGTTGGCGGCACCTGAGTC
1 AAAGCCCACAGAGTTGGTGGCACCT-AGTC
154315 AAAGCCCACATGAGTTGGTGGCACCTA
1 AAAGCCCACA-GAGTTGGTGGCACCTA
154342 AGTTTGAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
29 3 0.07
30 22 0.48
31 21 0.46
ACGTcount: A:0.26, C:0.28, G:0.27, T:0.18
Consensus pattern (29 bp):
AAAGCCCACAGAGTTGGTGGCACCTAGTC
Found at i:154379 original size:148 final size:149
Alignment explanation
Indices: 154017--154426 Score: 563
Period size: 149 Copynumber: 2.8 Consensus size: 149
154007 CTTCGAATGC
* * * *
154017 CAAAGTCCACATGAGTTGGTGGCATCTAAGTTCGAGTCAAGTCCATATTAGTTGGCACCTATCTA
1 CAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
154082 AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAT
66 AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAT
* *
154147 AAGTTGGTGGCTCTCGAGT
131 AAGTTGGCGGCCCTCGAGT
* * ** * * * *
154166 CAAAGCCTAGACAAATTGGTGGCACCTAAGTTTGAGTTAAGTCCACATTAGTTGGCACTTCTCTA
1 CAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
* * * * *
154231 AGGAGGTTAAGCCTTAGAATATGAAAGCCCACACGAGTTGGTGGTACCCTAGTCAAAGCCTGCA-
66 AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAT
*
154295 CAGTTGGCGGCACCT-GAGT
131 AAGTTGGCGGC-CCTCGAGT
*
154314 CAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTGTCTA
1 CAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
* * * * *
154379 AAGAGGTCAAGCCTTAGAATGTCAAAGTCCACGCAAGTTGGTGGCACC
66 AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACC
154427 TAAGTTCGAG
Statistics
Matches: 224, Mismatches: 36, Indels: 3
0.85 0.14 0.01
Matches are distributed among these distances:
148 110 0.49
149 114 0.51
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.24
Consensus pattern (149 bp):
CAAAGCCCACATGAGTTGGTGGCACCTAAGTTTGAGTCAAGTCCACATTAGTTGGCACCTATCTA
AGGAGGTTAAGCCTTAGAATGTCAAAGCCCACACGAGTTGGTGGCACCCCAGTCAAAGCCCGCAT
AAGTTGGCGGCCCTCGAGT
Found at i:155027 original size:20 final size:21
Alignment explanation
Indices: 154979--155028 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
154969 TTTTACAATT
*
154979 TGTATCGATATAAATAGTAAA
1 TGTATCGATACAAATAGTAAA
* * *
155000 TGTGTCGATACATA-AGTGAA
1 TGTATCGATACAAATAGTAAA
155020 TGTATCGAT
1 TGTATCGAT
155029 GCATGCCTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (21 bp):
TGTATCGATACAAATAGTAAA
Done.