Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold424
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 897778
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32
File 6 of 6
Found at i:829102 original size:58 final size:58
Alignment explanation
Indices: 828981--829122 Score: 162
Period size: 58 Copynumber: 2.5 Consensus size: 58
828971 TACAGCAACA
* * * * * * *
828981 ACCATTTATGTGATTTCA-GCATTATATGGTCATTCTAGTCATTTCCTATAATTCATG
1 ACCATTTATGTGATTTTATGCATTTTAGGGTAATCCTAATCATTTCCTAGAATTCATG
* *
829038 ACCATTTATGTGATTTTATGCATTTTAGGGTAATCCTAATCATTGT-CTAGGATTTATG
1 ACCATTTATGTGATTTTATGCATTTTAGGGTAATCCTAATCATT-TCCTAGAATTCATG
* *
829096 GCCATTTATGTGATTTTATACATTTTA
1 ACCATTTATGTGATTTTATGCATTTTA
829123 AGGTCTTGCT
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
57 17 0.24
58 54 0.75
59 1 0.01
ACGTcount: A:0.26, C:0.14, G:0.14, T:0.46
Consensus pattern (58 bp):
ACCATTTATGTGATTTTATGCATTTTAGGGTAATCCTAATCATTTCCTAGAATTCATG
Found at i:829139 original size:58 final size:58
Alignment explanation
Indices: 829039--829153 Score: 140
Period size: 58 Copynumber: 2.0 Consensus size: 58
829029 TAATTCATGA
* * * *
829039 CCATTTATGTGATTTTATGCATTTTAGGGTAATCCTAATCATTGTCTAGGATTTATGG
1 CCATTTATGTGATTTTATACATTTTAAGGTAATCCTAATCATTCTCCAGGATTTATGG
** * ** *
829097 CCATTTATGTGATTTTATACATTTTAAGGTCTTGCTTGTCATTCTCCATGATTTATG
1 CCATTTATGTGATTTTATACATTTTAAGGTAATCCTAATCATTCTCCAGGATTTATG
829154 ACTATGTATG
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
58 47 1.00
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.47
Consensus pattern (58 bp):
CCATTTATGTGATTTTATACATTTTAAGGTAATCCTAATCATTCTCCAGGATTTATGG
Found at i:832516 original size:166 final size:163
Alignment explanation
Indices: 832054--832578 Score: 675
Period size: 166 Copynumber: 3.2 Consensus size: 163
832044 TTTTGTTTTT
*
832054 TTTTTAATTTTTAAAATTCATCAAATATATTTATTTATTTCATATAAAATCTG-TTTTCAAAAAT
1 TTTTTAATTTTTAAAATTCATCAAATATATTTATTTATTTCATATTAAATC-GATTTTCAAAAAT
** *
832118 TCATTTATTTTCATGAGTTTTGAATTTTTT-TCTTGAAATTTTTCGGTTTCTAAAATACGAAGTT
65 TCATTTATTTTCATGAGTTTTGAATTTTTTCT-TTGAAATTTTTCTTTTTCGAAAA-ACGAAGTT
* *
832182 TTTTACTCCGTAAATGTTTTCAGGA-GGATTTTTCTTGG
128 TTCTACTCCGTAAATGTTTT-TGGAGGGA-TTTTCTT-G
* * *
832220 TTTCTAATTTTTAAAATTCATCAAATATATTTATTTCTTTCATATTAAAT-TATTTTTCAAAAAT
1 TTTTTAATTTTTAAAATTCATCAAATATATTTATTTATTTCATATTAAATCGA-TTTTCAAAAAT
* *
832284 TCATTTATTTTCATGAGTTTTGAATTTTTTCTTTGAAATTCTCTTGTTTTT-GAAATACGAAGTT
65 TCATTTATTTTCATGAGTTTTGAATTTTTTCTTTGAAATT-T-TTCTTTTTCGAAAAACGAAGTT
* *
832348 TTCTACTCTGTAAATATTTTTGGAGGGATTTCTCTCTG
128 TTCTACTCCGTAAATGTTTTTGGAGGGATTT-TCT-TG
*
832386 TTTTTAATTTTTAAAATTCATCAAATATATTTATTTAATTCATATTAAATCGATTTTCAAAAATT
1 TTTTTAATTTTTAAAATTCATCAAATATATTTATTTATTTCATATTAAATCGATTTTCAAAAATT
*
832451 CAATTATTTTCATGAGTTTTGAATTTTTTCTTTGAAATTTTTCTATTTTCGAAAAACCG-AGTTT
66 CATTTATTTTCATGAGTTTTGAATTTTTTCTTTGAAATTTTTCT-TTTTCGAAAAA-CGAAGTTT
* * *
832515 TCTATTCCATAAATGTTTTTGGGGGGATTTTCTTG
129 TCTACTCCGTAAATGTTTTTGGAGGGATTTTCTTG
*** * *
832550 ATTGAAAATTTTTAAAATTTATCTAATAT
1 -TTTTTAATTTTTAAAATTCATCAAATAT
832579 TGTCATTAAA
Statistics
Matches: 316, Mismatches: 30, Indels: 27
0.85 0.08 0.07
Matches are distributed among these distances:
164 5 0.02
165 37 0.12
166 260 0.82
167 9 0.03
168 5 0.02
ACGTcount: A:0.30, C:0.10, G:0.09, T:0.51
Consensus pattern (163 bp):
TTTTTAATTTTTAAAATTCATCAAATATATTTATTTATTTCATATTAAATCGATTTTCAAAAATT
CATTTATTTTCATGAGTTTTGAATTTTTTCTTTGAAATTTTTCTTTTTCGAAAAACGAAGTTTTC
TACTCCGTAAATGTTTTTGGAGGGATTTTCTTG
Found at i:833090 original size:21 final size:21
Alignment explanation
Indices: 833060--833106 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
833050 TAGTTCAACT
833060 AAAA-AATAAGAACAAAAGA-G
1 AAAATAATAAGAA-AAAAGAGG
*
833080 AAAATAATAAGAAAAAATAGG
1 AAAATAATAAGAAAAAAGAGG
833101 AAAATA
1 AAAATA
833107 GTCAGGATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 9 0.38
21 15 0.62
ACGTcount: A:0.74, C:0.02, G:0.13, T:0.11
Consensus pattern (21 bp):
AAAATAATAAGAAAAAAGAGG
Found at i:838805 original size:33 final size:33
Alignment explanation
Indices: 838763--838825 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
838753 TGAGGTAATG
838763 TATCGATACAAT-T-CTTCATGTATCGATACATTT
1 TATCGATACAATGTAC--CATGTATCGATACATTT
838796 TATCGATACAATGTACCATGTATCGATACA
1 TATCGATACAATGTACCATGTATCGATACA
838826 AACAGTGGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 26 0.93
34 1 0.04
35 1 0.04
ACGTcount: A:0.33, C:0.19, G:0.11, T:0.37
Consensus pattern (33 bp):
TATCGATACAATGTACCATGTATCGATACATTT
Found at i:839539 original size:14 final size:14
Alignment explanation
Indices: 839520--839546 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
839510 CTTTGTCAAG
839520 TTTTCAAAAATTTA
1 TTTTCAAAAATTTA
839534 TTTTCAAAAATTT
1 TTTTCAAAAATTT
839547 CTCCCCCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.52
Consensus pattern (14 bp):
TTTTCAAAAATTTA
Found at i:841368 original size:13 final size:13
Alignment explanation
Indices: 841350--841375 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
841340 ATAGTAACCC
841350 TTGTATCGATACA
1 TTGTATCGATACA
841363 TTGTATCGATACA
1 TTGTATCGATACA
841376 AAGAACATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:848893 original size:165 final size:165
Alignment explanation
Indices: 848596--849024 Score: 492
Period size: 165 Copynumber: 2.6 Consensus size: 165
848586 TTTTTATAAC
* *
848596 CCATAGGAATAATAGAAATCTTTAAAAATAACTAAAATGATGATTTTTCCTTTAAAAACTAAAAT
1 CCATAGGAATAATAGAAACCTTTAAAAATAACTAAAATGATGA-TTTACCTTTAAAAACTAAAAT
* * * * * *
848661 TTTCTATTTAATCTCTGAACATTTTGAAAGTTTTATTTCATACTCGACGAAAAACCAAAATGATG
65 TTTCTATTTAATCCCTAAAAATTTTAAAAATTTTATTTCATACTCGACGAAAAACCAAAAGGATG
* *
848726 CGAAAAGTTTTAAAAATTTT-TATA-TCTCTATGAACGA
130 CGAAAA-TTTT-AAAATTTTCTATACTC-CTACGAAAGA
* * * * *
848763 CCATAGGAGTAATAAAAACCTTTAAAAATGACTAAAATGATGA-TTACTTTTAAAAATTAAAATT
1 CCATAGGAATAATAGAAACCTTTAAAAATAACTAAAATGATGATTTACCTTTAAAAACTAAAATT
** * * * *
848827 TTCTATTTAATCCCTAAATTTTTTAAAAATTTTATTTCATAC-CTGATGGAAAACCGATAGGATG
66 TTCTATTTAATCCCTAAAAATTTTAAAAATTTTATTTCATACTC-GACGAAAAACCAAAAGGATG
* *
848891 CGAAAATTTTTAAATTTTCTATACTCCTACGAAAGG
130 CGAAAATTTTAAAATTTTCTATACTCCTACGAAAGA
* * *
848927 CTAT-GAGAACAATAGAAACCTTTCAAAATAACTAAAATGATGATTTTACCTTTAAAAACTAAAA
1 CCATAG-GAATAATAGAAACCTTTAAAAATAACTAAAATGATGA-TTTACCTTTAAAAACTAAAA
* * *
848991 TTTGCTATTTAAT-CCTAAAACTTTTCAAAATTTT
64 TTTTCTATTTAATCCCTAAAAATTTTAAAAATTTT
849025 TGTTTTAGTC
Statistics
Matches: 222, Mismatches: 34, Indels: 14
0.82 0.13 0.05
Matches are distributed among these distances:
163 8 0.04
164 51 0.23
165 95 0.43
166 29 0.13
167 39 0.18
ACGTcount: A:0.42, C:0.13, G:0.09, T:0.36
Consensus pattern (165 bp):
CCATAGGAATAATAGAAACCTTTAAAAATAACTAAAATGATGATTTACCTTTAAAAACTAAAATT
TTCTATTTAATCCCTAAAAATTTTAAAAATTTTATTTCATACTCGACGAAAAACCAAAAGGATGC
GAAAATTTTAAAATTTTCTATACTCCTACGAAAGA
Found at i:855419 original size:16 final size:16
Alignment explanation
Indices: 855395--855425 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
855385 AACTTCCATA
*
855395 AAAATATTTGTCAAAT
1 AAAACATTTGTCAAAT
855411 AAAACATTTGTCAAA
1 AAAACATTTGTCAAA
855426 AAATTTTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.32
Consensus pattern (16 bp):
AAAACATTTGTCAAAT
Found at i:855711 original size:73 final size:73
Alignment explanation
Indices: 855524--855713 Score: 211
Period size: 73 Copynumber: 2.6 Consensus size: 73
855514 CAGTGGTAGC
* * * * * *
855524 CCTTTTTAAAAGCCCATACAAGTTGGTGGCAACTCTTTCTTTTCAAAGCTCGTACAAGTTGGCAA
1 CCTTTTT-TAAGCCCATACAAGTTAGTGGCAACTCTTTCTTTTTAAAGCCCGCACAAGCTGGCAA
*
855589 CACCTTTTT
65 CACCCTTTT
* * * * *
855598 CCTTTTTTAAGCCCATACAAGTTAGTGGTACCTATATCTTTTTAAAGCCCGCACAAGCTGGCAAT
1 CCTTTTTTAAGCCCATACAAGTTAGTGGCAACTCTTTCTTTTTAAAGCCCGCACAAGCTGGCAAC
855663 ACCCTTTT
66 ACCCTTTT
* ** *
855671 -CTCTTTTTAAGCCCACACAAGTTTTTGGCATCTCTTTCTTTTT
1 CCT-TTTTTAAGCCCATACAAGTTAGTGGCAACTCTTTCTTTTT
855714 TCCTTTTTAA
Statistics
Matches: 96, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
72 2 0.02
73 87 0.91
74 7 0.07
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (73 bp):
CCTTTTTTAAGCCCATACAAGTTAGTGGCAACTCTTTCTTTTTAAAGCCCGCACAAGCTGGCAAC
ACCCTTTT
Found at i:855788 original size:36 final size:35
Alignment explanation
Indices: 855748--855921 Score: 124
Period size: 36 Copynumber: 4.9 Consensus size: 35
855738 GGCATACCTT
* *
855748 TTTTCTTTTCAAAGCACATACAAGTTGGTGGCACCC
1 TTTTCTTTTTAAAGC-CACACAAGTTGGTGGCACCC
* *
855784 TTTTCTTTTTAAAGGCCACACAAGTTAGTGGCA-AC
1 TTTTCTTTTTAAA-GCCACACAAGTTGGTGGCACCC
* * * *
855819 -TTT-TTTCTAACGCCACACAAGTTGTTAGCACCC
1 TTTTCTTTTTAAAGCCACACAAGTTGGTGGCACCC
* * * ** *
855852 CTTTCTTTTTAAAGCCCGCATAAACTAGTGGCA-CC
1 TTTTCTTTTTAAAG-CCACACAAGTTGGTGGCACCC
855887 TTTTCCTCTTTCT-AAGCCCACACAAGTTGGTGGCA
1 TTTT-CT-TTT-TAAAG-CCACACAAGTTGGTGGCA
855922 TCTATTTTTT
Statistics
Matches: 105, Mismatches: 25, Indels: 15
0.72 0.17 0.10
Matches are distributed among these distances:
32 16 0.15
33 7 0.07
34 6 0.06
35 13 0.12
36 40 0.38
37 22 0.21
38 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.33
Consensus pattern (35 bp):
TTTTCTTTTTAAAGCCACACAAGTTGGTGGCACCC
Found at i:856022 original size:36 final size:34
Alignment explanation
Indices: 855982--856088 Score: 101
Period size: 36 Copynumber: 3.1 Consensus size: 34
855972 CTTCTTTAAT
855982 CCCACATAAGTTGGTGGCACCTCTTTGCTTTCAAAG
1 CCCACATAAGTTGGTGGCACC-CTTT-CTTTCAAAG
*** *
856018 CCCACATAAGTCAATGGCAACC-TT-TTTCAAAG
1 CCCACATAAGTTGGTGGCACCCTTTCTTTCAAAG
* * *
856050 CCCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAG
1 CCCACATAAGTTGGTGGCACCC-TTTC-TTTCAAAG
856086 CCC
1 CCC
856089 GTACAAGCTA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
32 24 0.43
34 4 0.07
35 1 0.02
36 27 0.48
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (34 bp):
CCCACATAAGTTGGTGGCACCCTTTCTTTCAAAG
Found at i:856074 original size:32 final size:32
Alignment explanation
Indices: 855982--856075 Score: 98
Period size: 32 Copynumber: 2.8 Consensus size: 32
855972 CTTCTTTAAT
855982 CCCACATAAGTTGGTGGCACCTCTTTGCTTTCAAAG
1 CCCACATAAGTTGGTGGCACC-C-TT--TTTCAAAG
*** *
856018 CCCACATAAGTCAATGGCAACCTTTTTCAAAG
1 CCCACATAAGTTGGTGGCACCCTTTTTCAAAG
* *
856050 CCCACACAAGTTGGTGGTACCCTTTT
1 CCCACATAAGTTGGTGGCACCCTTTT
856076 CTTTTTAAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
32 28 0.58
34 2 0.04
35 1 0.02
36 17 0.35
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.29
Consensus pattern (32 bp):
CCCACATAAGTTGGTGGCACCCTTTTTCAAAG
Found at i:856079 original size:220 final size:219
Alignment explanation
Indices: 855598--856141 Score: 541
Period size: 220 Copynumber: 2.5 Consensus size: 219
855588 ACACCTTTTT
* * * * *
855598 CCTTTTT-TAAGCCCATACAAGTTAGTGGTA-CCTATATCTTTTTAAAGCCCGCACAAGCTGGCA
1 CCTTTTTCTAAGCCCACACAAGTTGGTGGTACCCT-TTTCTTTTTAAAGCCCGCACAAACTAGCA
* * ** *
855661 ATACCCTTTTCTCTTTTTAAGCCCACACAAGTTTTTGGCATCTCTTTCTTTTTTCCTTTTTAAAG
65 ACACCCTTTTCTCTTTCTAAGCCCACACAAGTTGGTGGCA-CTCTATCTTTTTTCCTTTTTAAAG
* * * * * * *
855726 CCTGCAAAAGCTGGCATACCTTTTTTCTTTTCAAAGCACATACAAGTTGGTGGCACCCTTTTCTT
129 CCCGCAAAAGCTGCCACACCATCTTTCTTTTCAAACCACATA-AAGTTGGTGGCACCCTTTGCTT
* * * *
855791 TTTAAAGGCCACACAAGTTAGTGGCAA
193 TTCAAAGCCCACACAAGTCAATGGCAA
* * * * * * **
855818 CTTTTTTCTAA-CGCCACACAAGTTGTTAGCACCCCTTTCTTTTTAAAGCCCGCATAAACTAGTG
1 CCTTTTTCTAAGC-CCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAGCCCGCACAAACTAGCA
*
855882 GCA-CCTTTTCCTCTTTCTAAGCCCACACAAGTTGGTGGCA-TCTAT-TTTTTTCCTTTTTTAAA
65 ACACCCTTTT-CTCTTTCTAAGCCCACACAAGTTGGTGGCACTCTATCTTTTTTCC-TTTTTAAA
* *
855944 GCCCGCACAAA-CTGCCAACACCATCTTTCTTCTTTAATCCCACAT-AAGTTGGTGGCACCTCTT
128 GCCCGCA-AAAGCTGCC-ACACCATCTTTCTT-TTCAA-ACCACATAAAGTTGGTGGCACC-CTT
*
856007 TGC-TTTCAAAGCCCACATAAGTCAATGGCAA
188 TGCTTTTCAAAGCCCACACAAGTCAATGGCAA
* * * *
856038 CCTTTTTCAAAGCCCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAGCCCGTACAAGCTAACAA
1 CCTTTTTCTAAGCCCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAGCCCGCACAAACTAGCAA
* * **
856103 CATCATTTT-TCTACCTTAAGCCCACACAAGTTGGTGGCA
66 CACCCTTTTCTCTTTC-TAAGCCCACACAAGTTGGTGGCA
856142 TCTTTTTCTT
Statistics
Matches: 262, Mismatches: 49, Indels: 26
0.78 0.15 0.08
Matches are distributed among these distances:
218 8 0.03
219 26 0.10
220 139 0.53
221 82 0.31
222 7 0.03
ACGTcount: A:0.25, C:0.27, G:0.14, T:0.34
Consensus pattern (219 bp):
CCTTTTTCTAAGCCCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAGCCCGCACAAACTAGCAA
CACCCTTTTCTCTTTCTAAGCCCACACAAGTTGGTGGCACTCTATCTTTTTTCCTTTTTAAAGCC
CGCAAAAGCTGCCACACCATCTTTCTTTTCAAACCACATAAAGTTGGTGGCACCCTTTGCTTTTC
AAAGCCCACACAAGTCAATGGCAA
Found at i:856168 original size:141 final size:142
Alignment explanation
Indices: 855936--856237 Score: 394
Period size: 141 Copynumber: 2.1 Consensus size: 142
855926 TTTTTTTCCT
* * ** * * * *
855936 TTTTTAAAGCCCGCACAAACTGCCAACACCATCTTTCTTCTTTAATCCCACATAAGTTGGTGGCA
1 TTTTTAAAGCCCGTACAAGCTAACAACACCATCTTTCTACCTTAAGCCCACACAAGTTGGTGGCA
*
856001 CCTCTTTGCTTTCAAAGCCCACATAAGTCAATGGCAACCTTTTTC-AAAGCCCACACAAGTTGGT
66 CCTCTTTGCTTTCAAAGCCCACATAAGTCAATGGCAACCCTTTTCAAAAGCCCACACAAGTTGGT
*
856065 GGTACC-CTTTTC
131 AGTACCTC-TTTC
* *
856077 TTTTTAAAGCCCGTACAAGCTAACAACATCATTTTTCTACCTTAAGCCCACACAAGTTGGTGGCA
1 TTTTTAAAGCCCGTACAAGCTAACAACACCATCTTTCTACCTTAAGCCCACACAAGTTGGTGGCA
* * * * *
856142 TCT-TTTTCTTTTCAAAGCTCATATAAGTCAGTGGCAACCCTTTTCAAAAGCCCACACAAGTTGG
66 CCTCTTTGC-TTTCAAAGCCCACATAAGTCAATGGCAACCCTTTTCAAAAGCCCACACAAGTTGG
856206 TAGTACCTCTTTC
130 TAGTACCTCTTTC
* *
856219 TTTTTAAGGCCCATACAAG
1 TTTTTAAAGCCCGTACAAG
856238 TTGGCGGCAC
Statistics
Matches: 139, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
140 4 0.03
141 89 0.64
142 45 0.32
143 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.31
Consensus pattern (142 bp):
TTTTTAAAGCCCGTACAAGCTAACAACACCATCTTTCTACCTTAAGCCCACACAAGTTGGTGGCA
CCTCTTTGCTTTCAAAGCCCACATAAGTCAATGGCAACCCTTTTCAAAAGCCCACACAAGTTGGT
AGTACCTCTTTC
Found at i:856186 original size:73 final size:70
Alignment explanation
Indices: 855982--856238 Score: 206
Period size: 73 Copynumber: 3.7 Consensus size: 70
855972 CTTCTTTAAT
* * *
855982 CCCACATAAGTTGGTGGCACCTCTTTGC-TTTCAAAGCCCACATAAGTCAATGGCAA-CCTTTT-
1 CCCACACAAGTTGGTGGCACCT-TTTTCTTTTCAAAGCCCATATAAGTC-ATGGCAACCCTTTTC
856044 T-CAAAG
64 TACAAAG
* * * * * ** *
856050 CCCACACAAGTTGGTGGTACCCTTTTCTTTTTAAAGCCCGTACAAG-C-TAACAACATCATTTTT
1 CCCACACAAGTTGGTGGCACCTTTTTCTTTTCAAAGCCCATATAAGTCATGGCAAC--C-CTTTT
*
856113 CTACCTTAAG
63 CTA-C-AAAG
* *
856123 CCCACACAAGTTGGTGGCATCTTTTTCTTTTCAAAGCTCATATAAGTCAGTGGCAACCCTTTTC-
1 CCCACACAAGTTGGTGGCACCTTTTTCTTTTCAAAGCCCATATAAGTCA-TGGCAACCCTTTTCT
856187 A-AAAG
65 ACAAAG
* * * * * *
856192 CCCACACAAGTTGGTAGTACCTCTTTCTTTTTAAGGCCCATACAAGT
1 CCCACACAAGTTGGTGGCACCTTTTTCTTTTCAAAGCCCATATAAGT
856239 TGGCGGCACC
Statistics
Matches: 146, Mismatches: 31, Indels: 23
0.73 0.16 0.12
Matches are distributed among these distances:
65 4 0.03
67 5 0.03
68 34 0.23
69 46 0.32
70 1 0.01
72 2 0.01
73 47 0.32
74 2 0.01
76 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (70 bp):
CCCACACAAGTTGGTGGCACCTTTTTCTTTTCAAAGCCCATATAAGTCATGGCAACCCTTTTCTA
CAAAG
Found at i:856432 original size:52 final size:52
Alignment explanation
Indices: 856327--856470 Score: 155
Period size: 52 Copynumber: 2.8 Consensus size: 52
856317 TGGGGGCATT
* * * * *
856327 ATCTTTAAGTCCAATGTCGCTAGCCTTAAATTAGGATATTGGCACTCTTATC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACTCTCATC
*
856379 ATTTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACAT-TCATC
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATTGGCAC-TCTCATC
* ** * * * *
856431 ATCTTTAAATGTAATGTTGTTGCCCTTGAAGTAGCACATT
1 ATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATT
856471 AGCATCATAC
Statistics
Matches: 77, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
52 76 0.99
53 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (52 bp):
ATCTTTAAGTCCAATGTCGCTGGCCTTGAATTAGCACATTGGCACTCTCATC
Found at i:857115 original size:21 final size:21
Alignment explanation
Indices: 857091--857143 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
857081 TTTTACAATT
*
857091 TGTATCAATACAATAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
857112 TGTATTGATAC-ATAAGTGAA
1 TGTATCGATACAATAAGTGAA
*
857132 TCTATCGATACA
1 TGTATCGATACA
857144 TGTCTGAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.42, C:0.11, G:0.15, T:0.32
Consensus pattern (21 bp):
TGTATCGATACAATAAGTGAA
Found at i:857128 original size:20 final size:20
Alignment explanation
Indices: 857098--857164 Score: 71
Period size: 20 Copynumber: 3.2 Consensus size: 20
857088 ATTTGTATCA
857098 ATACAATAAGTGAATGTATTG
1 ATAC-ATAAGTGAATGTATTG
* *
857119 ATACATAAGTGAATCTATCG
1 ATACATAAGTGAATGTATTG
***
857139 ATACATGTCTGAAATGTATTG
1 ATACATAAGTG-AATGTATTG
857160 ATACA
1 ATACA
857165 GGATCATGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.40, C:0.10, G:0.16, T:0.33
Consensus pattern (20 bp):
ATACATAAGTGAATGTATTG
Found at i:859829 original size:78 final size:75
Alignment explanation
Indices: 859739--859928 Score: 195
Period size: 80 Copynumber: 2.4 Consensus size: 75
859729 TACAATCCCA
* *
859739 CCATTTTTGAAGGGATACTCTAACCCTATTTTTCTTTCAAAATATTAAATTT-TT-TCTCTTAGA
1 CCATTTTTGAAGGGATACTCCAACCCT-TTTTTCTTTCAAAACATTAAATTTCTTATCTCTTAG-
*
859802 GATACTCTAACC
64 GATACTCCAACC
* * * *
859814 CCATCGTTTTCGAAGGGAAACTCGAACCTCGTTTTTATTTTTTAAAACATTAAATTTCTTCATCT
1 CCAT--TTTT-GAAGGGATACTCCAACC-C-TTTTT-TCTTTCAAAACATTAAATTTCTT-ATCT
*
859879 CTTAGGATACTCCAACT
59 CTTAGGATACTCCAACC
*
859896 CCATTTCTGAAGGGATACTCCAACCCTGTTTTT
1 CCATTTTTGAAGGGATACTCCAACCCT-TTTTT
859929 ATTTTTCAAA
Statistics
Matches: 95, Mismatches: 10, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
75 4 0.04
77 6 0.06
78 20 0.21
79 20 0.21
80 21 0.22
81 2 0.02
82 14 0.15
83 8 0.08
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (75 bp):
CCATTTTTGAAGGGATACTCCAACCCTTTTTTCTTTCAAAACATTAAATTTCTTATCTCTTAGGA
TACTCCAACC
Found at i:859927 original size:79 final size:77
Alignment explanation
Indices: 859739--859938 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 77
859729 TACAATCCCA
* * * *
859739 CCATTTTTGAAGGGATACTCTAACCCT-ATTTT-TCTTTCAAAATATTAAATTTTTTCTCTTAGA
1 CCATTTTTGAAGGGATACTCCAACCCTGTTTTTATTTTTCAAAACATTAAATTTTTTCTCTTAGA
*
859802 GATACTCTAACC
66 GATACTCCAACC
* * *
859814 CCATCGTTTTCGAAGGGAAACTCGAA-CCTCGTTTTTATTTTTTAAAACATTAAATTTCTTCATC
1 CCAT--TTTT-GAAGGGATACTCCAACCCT-GTTTTTATTTTTCAAAACATTAAATTT-TT--TC
*
859878 TCTTAG-GATACTCCAACT
59 TCTTAGAGATACTCCAACC
*
859896 CCATTTCTGAAGGGATACTCCAACCCTGTTTTTATTTTTCAAA
1 CCATTTTTGAAGGGATACTCCAACCCTGTTTTTATTTTTCAAA
859939 CATCGAATTT
Statistics
Matches: 103, Mismatches: 12, Indels: 16
0.79 0.09 0.12
Matches are distributed among these distances:
75 4 0.04
77 7 0.07
78 13 0.13
79 32 0.31
80 23 0.22
81 2 0.02
82 14 0.14
83 8 0.08
ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41
Consensus pattern (77 bp):
CCATTTTTGAAGGGATACTCCAACCCTGTTTTTATTTTTCAAAACATTAAATTTTTTCTCTTAGA
GATACTCCAACC
Found at i:862559 original size:88 final size:86
Alignment explanation
Indices: 862466--862846 Score: 302
Period size: 88 Copynumber: 4.3 Consensus size: 86
862456 ATCTCTTTAG
* * * *
862466 AAGAGTGAGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGGAAATTTTGATTTTTTTGAAAA
1 AAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTACACAAAGAAAATTTTGATTTTTTT-AAAA
*
862531 GTGAGGTTGAACTGTCCCCTCGA
65 GTGAGGTTGAAGTGTCCCCTC-A
* * * *
862554 AAGAGTGGGGATGAAGTTTCCCCAATGATAAAATTCCACAAAGGAAAA-TTTGATTTATTTAAAG
1 AAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTACACAAA-GAAAATTTTGATTTTTTTAAA-
** * * ** *
862618 AACGGGGTTGGAGTGTATCTTCA
64 AGTGAGGTTGAAGTGTCCCCTCA
* * * **
862641 AAGGAGTGGGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGAAACATTTCAATTTTTGTT-A
1 AA-GAGTGGGGATGGAGTTTCCCCAAAGATAAAATTACACAAAGAAA-ATTTTGATTTTT-TTAA
*
862705 GAGT-AGAGTTGAAGTGTCCCCTCA
63 AAGTGAG-GTTGAAGTGTCCCCTCA
* * * * * *
862729 GAGGAATGGGGATAGAGTTTCCCTAAAGACAAAATTCCACAAAGAAAATTTTGATTTTTCGTTTG
1 -AAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTACACAAAGAAAATTTTGA-TTTT--TTT-
* * * * *
862794 AAGAGCGGGGTT-AGAGTGTTCCCTAA
61 AAAAGTGAGGTTGA-AGTGTCCCCTCA
862820 GAAGAGTGGGGATGGAGTTTCCCCAAA
1 -AAGAGTGGGGATGGAGTTTCCCCAAA
862847 ATTGTAAAAT
Statistics
Matches: 227, Mismatches: 51, Indels: 27
0.74 0.17 0.09
Matches are distributed among these distances:
87 16 0.07
88 151 0.67
89 15 0.07
90 4 0.02
91 40 0.18
92 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (86 bp):
AAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTACACAAAGAAAATTTTGATTTTTTTAAAAG
TGAGGTTGAAGTGTCCCCTCA
Found at i:862741 original size:176 final size:175
Alignment explanation
Indices: 862446--862846 Score: 447
Period size: 176 Copynumber: 2.3 Consensus size: 175
862436 ATGAAGAATA
* * * *
862446 GGGTTGGAGTATCTCTTTAGAAGAGTGAGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGGA
1 GGGTTGGAGTGT-TCTTCA-AAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGAA
** *
862511 AATTTTGATTTTTTTGAAAAGTGAGGTTGAACTGTCCCCTCGAAAGAGTGGGGAT-GAAGTTTCC
64 AATTTCAATTTTTTT-AAAAGTGAGGTTGAACTGTCCCCTCGAAAGAATGGGGATAG-AGTTTCC
* *
862575 CCAATGATAAAATTCCACAAAGGAAAA-TTTGA-TTT-ATTTAAAGAACG
127 CCAAAGACAAAATTCCACAAA-GAAAATTTTGATTTTCATTTAAAGAACG
*
862622 GGGTTGGAGTGTATCTTCAAAGGAGTGGGGATGGAGTTTCCCCAAGGATAAAATTATACGAAGAA
1 GGGTTGGAGTGT-TCTTCAAA-GAGTGGGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGAA
* * *
862687 ACATTTCAATTTTTGTT-AGAGT-AGAGTTGAAGTGTCCCCTC-AGAGGAATGGGGATAGAGTTT
64 A-ATTTCAATTTTT-TTAAAAGTGAG-GTTGAACTGTCCCCTCGA-AAGAATGGGGATAGAGTTT
* * * *
862749 CCCTAAAGACAAAATTCCACAAAGAAAATTTTGATTTTTCGTTTGAAGAGCG
125 CCCCAAAGACAAAATTCCACAAAGAAAATTTTGA-TTTTCATTTAAAGAACG
* * *
862801 GGGTTAGAGTGTTCCCTAAGAAGAGTGGGGATGGAGTTTCCCCAAA
1 GGGTTGGAGTGTT-CTTCA-AAGAGTGGGGATGGAGTTTCCCCAAA
862847 ATTGTAAAAT
Statistics
Matches: 191, Mismatches: 22, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
175 10 0.05
176 116 0.61
177 11 0.06
178 6 0.03
179 46 0.24
180 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.26, T:0.29
Consensus pattern (175 bp):
GGGTTGGAGTGTTCTTCAAAGAGTGGGGATGGAGTTTCCCCAAAGATAAAATTATACGAAGAAAA
TTTCAATTTTTTTAAAAGTGAGGTTGAACTGTCCCCTCGAAAGAATGGGGATAGAGTTTCCCCAA
AGACAAAATTCCACAAAGAAAATTTTGATTTTCATTTAAAGAACG
Found at i:866620 original size:13 final size:13
Alignment explanation
Indices: 866602--866626 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
866592 CAATTCATCA
866602 TGTATCGATACAT
1 TGTATCGATACAT
866615 TGTATCGATACA
1 TGTATCGATACA
866627 ATTCATCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:866628 original size:33 final size:33
Alignment explanation
Indices: 866582--866646 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
866572 TTTGAAGCAA
*
866582 TGTATCGACACAATTCATCATGTATCGATACAT
1 TGTATCGACACAATTCATCATATATCGATACAT
*
866615 TGTATCGATACAATTCATCATATATCGATACA
1 TGTATCGACACAATTCATCATATATCGATACA
866647 AACAGTGGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.34
Consensus pattern (33 bp):
TGTATCGACACAATTCATCATATATCGATACAT
Found at i:866695 original size:13 final size:13
Alignment explanation
Indices: 866677--866703 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
866667 TGCCAGTTTC
866677 ATGTATCGATACA
1 ATGTATCGATACA
866690 ATGTATCGATACA
1 ATGTATCGATACA
866703 A
1 A
866704 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:871574 original size:15 final size:15
Alignment explanation
Indices: 871534--871575 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
871524 AAATTTTGTT
*
871534 TCTTTCTCAAAGGCA
1 TCTTTATCAAAGGCA
*
871549 T-TGTATCCAAAGGCA
1 TCTTTAT-CAAAGGCA
871564 TCTTTATCAAAG
1 TCTTTATCAAAG
871576 AATGCTCTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 4
0.76 0.10 0.14
Matches are distributed among these distances:
14 3 0.14
15 15 0.68
16 4 0.18
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.33
Consensus pattern (15 bp):
TCTTTATCAAAGGCA
Found at i:874224 original size:19 final size:20
Alignment explanation
Indices: 874200--874252 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 20
874190 CACACCTAGA
* *
874200 TGTATCGATACATG-TTTAT
1 TGTATCGATACATGCATAAT
*
874219 TGTATCGATATATGCATAAT
1 TGTATCGATACATGCATAAT
*
874239 TGTATCTATACATG
1 TGTATCGATACATG
874253 AAACTGGCAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 13 0.46
20 15 0.54
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.43
Consensus pattern (20 bp):
TGTATCGATACATGCATAAT
Found at i:880183 original size:20 final size:20
Alignment explanation
Indices: 880145--880184 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
880135 TTTCAAATTT
880145 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
880166 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
880185 TATGAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:882522 original size:20 final size:20
Alignment explanation
Indices: 882479--882532 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
882469 CAGTTATGCT
** *
882479 TTGTATCGATACA-GGTTTA
1 TTGTATCGATACATGCATAA
882498 TTGTATCGATACATGCATAA
1 TTGTATCGATACATGCATAA
*
882518 TTGTATTGATACATG
1 TTGTATCGATACATG
882533 AAACTGGCAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATGCATAA
Found at i:886431 original size:13 final size:13
Alignment explanation
Indices: 886413--886437 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
886403 ATGTTGCACA
886413 GTATCGATACATT
1 GTATCGATACATT
886426 GTATCGATACAT
1 GTATCGATACAT
886438 GACCAAATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:886546 original size:13 final size:13
Alignment explanation
Indices: 886528--886552 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
886518 ACACACAGTA
886528 TGTATCGATACAT
1 TGTATCGATACAT
886541 TGTATCGATACA
1 TGTATCGATACA
886553 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:889911 original size:32 final size:34
Alignment explanation
Indices: 889854--889918 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
889844 TACAAGCCAA
*
889854 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATATATTTTGTGTATCGATACAT
889888 TGTATCGATA-A-ATATTTTGTGTATCGATACA
1 TGTATCGATACATATATTTTGTGTATCGATACA
889919 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 19 0.63
33 1 0.03
34 10 0.33
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.45
Consensus pattern (34 bp):
TGTATCGATACATATATTTTGTGTATCGATACAT
Found at i:890023 original size:20 final size:20
Alignment explanation
Indices: 889971--890025 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
889961 CATCTTTTTC
*
889971 ATGTATCGATACATTGCAAT
1 ATGTATCGATACTTTGCAAT
889991 ATGTATCGATACTTTG-AATT
1 ATGTATCGATACTTTGCAA-T
*
890011 GTGTATCGATACTTT
1 ATGTATCGATACTTT
890026 TAAGGGTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACTTTGCAAT
Found at i:892003 original size:21 final size:20
Alignment explanation
Indices: 891974--892016 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
891964 GACTAGTGTG
**
891974 GGGACTGCCCGGTCGTGACCT
1 GGGACTG-CCGGTCACGACCT
*
891995 GGGAGTGCCGGTCACGACCT
1 GGGACTGCCGGTCACGACCT
892015 GG
1 GG
892017 TGGTGCTGCC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.12, C:0.30, G:0.42, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCACGACCT
Found at i:892466 original size:13 final size:13
Alignment explanation
Indices: 892448--892486 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
892438 ATAATCCCCC
892448 TGTATCGATACAA
1 TGTATCGATACAA
*
892461 TGTATCGATACAT
1 TGTATCGATACAA
892474 TGTATCGATACAA
1 TGTATCGATACAA
892487 AGAAAAATGT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:894587 original size:15 final size:15
Alignment explanation
Indices: 894567--894597 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
894557 ATTTCGTTTG
*
894567 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
894582 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
894597 G
1 G
894598 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Done.