Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold43
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2559314
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Warning! 13088 characters in sequence are not A, C, G, or T
File 10 of 19
Found at i:1146016 original size:11 final size:11
Alignment explanation
Indices: 1145996--1146037 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
1145986 GTATATTAAT
1145996 AATTTATATTA
1 AATTTATATTA
*
1146007 AATATATATT-
1 AATTTATATTA
*
1146017 TATTTATATTA
1 AATTTATATTA
1146028 AATTTATATT
1 AATTTATATT
1146038 TTATTATAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (11 bp):
AATTTATATTA
Found at i:1146023 original size:21 final size:21
Alignment explanation
Indices: 1145997--1146038 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
1145987 TATATTAATA
1145997 ATTTATATTAAATATATATTT
1 ATTTATATTAAATATATATTT
*
1146018 ATTTATATTAAATTTATATTT
1 ATTTATATTAAATATATATTT
1146039 TATTATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTATATTAAATATATATTT
Found at i:1146044 original size:21 final size:21
Alignment explanation
Indices: 1145999--1146072 Score: 71
Period size: 21 Copynumber: 3.4 Consensus size: 21
1145989 TATTAATAAT
*
1145999 TTATATTAAATATATA-TTTA
1 TTATATTAAATTTATATTTTA
1146019 TTTATATTAAATTTATATTTTA
1 -TTATATTAAATTTATATTTTA
*
1146041 TTATAATTTAATTTTAATTATTTT-
1 TTAT-A-TTAAATTT-A-TATTTTA
1146065 TTATATTA
1 TTATATTA
1146073 CGTCCTTATC
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
21 19 0.41
22 8 0.17
23 8 0.17
24 5 0.11
25 6 0.13
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATATTAAATTTATATTTTA
Found at i:1146053 original size:22 final size:23
Alignment explanation
Indices: 1146013--1146072 Score: 56
Period size: 22 Copynumber: 2.7 Consensus size: 23
1146003 ATTAAATATA
1146013 TATTTATTTATATTAAATTTATA
1 TATTTATTTATATTAAATTTATA
*
1146036 T-TTTA-TTATAATTTAATTT-TAA
1 TATTTATTTAT-ATTAAATTTAT-A
1146058 TTATTT-TTTATATTA
1 -TATTTATTTATATTA
1146073 CGTCCTTATC
Statistics
Matches: 30, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
21 5 0.17
22 13 0.43
23 5 0.17
24 7 0.23
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
TATTTATTTATATTAAATTTATA
Found at i:1146060 original size:17 final size:16
Alignment explanation
Indices: 1145994--1146061 Score: 59
Period size: 17 Copynumber: 4.1 Consensus size: 16
1145984 TAGTATATTA
* *
1145994 ATAATTTATATTAAAT
1 ATAATTTATTTTAATT
1146010 ATATATTTA-TTTATATT
1 ATA-ATTTATTTTA-ATT
*
1146027 A-AATTTATATTTTATT
1 ATAATTTAT-TTTAATT
1146043 ATAATTTAATTTTAATT
1 ATAATTT-ATTTTAATT
1146060 AT
1 AT
1146062 TTTTTATATT
Statistics
Matches: 42, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
15 5 0.12
16 11 0.26
17 24 0.57
18 2 0.05
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATAATTTATTTTAATT
Found at i:1149944 original size:16 final size:16
Alignment explanation
Indices: 1149923--1149959 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
1149913 GGAACCCGAA
1149923 AATGAAAATATTTAAG
1 AATGAAAATATTTAAG
1149939 AATGAAAATATTTAAG
1 AATGAAAATATTTAAG
1149955 AATGA
1 AATGA
1149960 GTTGACAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.30
Consensus pattern (16 bp):
AATGAAAATATTTAAG
Found at i:1150700 original size:38 final size:37
Alignment explanation
Indices: 1150648--1150720 Score: 94
Period size: 36 Copynumber: 1.9 Consensus size: 37
1150638 ATTTATATTT
* * *
1150648 AAATATAAATATAAAAATATTATTTTTTAAATATATAAA
1 AAATATAAAAAT-AAAATATT-TATATTAAATATATAAA
1150687 AAAT-TAAAAATAAAATATTTATATTAAATATATA
1 AAATATAAAAATAAAATATTTATATTAAATATATA
1150721 TTTATATTTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 13 0.42
37 8 0.26
38 6 0.19
39 4 0.13
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (37 bp):
AAATATAAAAATAAAATATTTATATTAAATATATAAA
Found at i:1150723 original size:17 final size:17
Alignment explanation
Indices: 1150701--1150734 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1150691 TAAAAATAAA
1150701 ATATTTATATTAAATAT
1 ATATTTATATTAAATAT
*
1150718 ATATTTATATTTAATAT
1 ATATTTATATTAAATAT
1150735 TCACAGTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATTTATATTAAATAT
Found at i:1151560 original size:14 final size:14
Alignment explanation
Indices: 1151541--1151573 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1151531 TTAATTTATT
1151541 TAATAAATATAAA-A
1 TAATAAA-ATAAATA
1151555 TAATAAAATAAATA
1 TAATAAAATAAATA
1151569 TAATA
1 TAATA
1151574 CGATACATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (14 bp):
TAATAAAATAAATA
Found at i:1157561 original size:25 final size:25
Alignment explanation
Indices: 1157527--1157576 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
1157517 ACGATACAGG
1157527 GACCAGTTACTTGATCAGTACTAGT
1 GACCAGTTACTTGATCAGTACTAGT
1157552 GACCAGTTACTTGATCAGTACTAGT
1 GACCAGTTACTTGATCAGTACTAGT
1157577 TGCTTTTTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.20, G:0.20, T:0.32
Consensus pattern (25 bp):
GACCAGTTACTTGATCAGTACTAGT
Found at i:1162754 original size:13 final size:13
Alignment explanation
Indices: 1162736--1162766 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
1162726 TTTTTTAAAA
1162736 AATATTTATATTT
1 AATATTTATATTT
1162749 AATATTTATATTT
1 AATATTTATATTT
*
1162762 GATAT
1 AATAT
1162767 ATTTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (13 bp):
AATATTTATATTT
Found at i:1162853 original size:17 final size:17
Alignment explanation
Indices: 1162815--1162847 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
1162805 TTTAAATACA
*
1162815 TAAA-AAATATTCATAT
1 TAAATAAATATACATAT
1162831 TAAATAAATATACATAT
1 TAAATAAATATACATAT
1162848 CTAATATGCT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (17 bp):
TAAATAAATATACATAT
Found at i:1163393 original size:25 final size:24
Alignment explanation
Indices: 1163339--1163394 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
1163329 TAATTATGAT
1163339 AAAT-ATT-AATTATAAATATAAA
1 AAATAATTAAATTATAAATATAAA
1163361 AAATAATTAAATT-TAAATTATCAAA
1 AAATAATTAAATTATAAA-TAT-AAA
*
1163386 TAATAATTA
1 AAATAATTA
1163395 TAATATTGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
22 4 0.14
23 7 0.24
24 7 0.24
25 11 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
AAATAATTAAATTATAAATATAAA
Found at i:1163623 original size:3 final size:3
Alignment explanation
Indices: 1163615--1163646 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
1163605 TATATAAATA
1163615 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1163647 GTATATCATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:1163754 original size:2 final size:2
Alignment explanation
Indices: 1163747--1163787 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
1163737 TCCCTACAAC
1163747 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1163788 AAAGTATAGC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1170524 original size:31 final size:30
Alignment explanation
Indices: 1170470--1170532 Score: 81
Period size: 31 Copynumber: 2.1 Consensus size: 30
1170460 ATTATTTAAT
*
1170470 ATAAAAATTTTTATATTAAATATAAAATAA
1 ATAAAAATTTTTAAATTAAATATAAAATAA
** *
1170500 ATAAAAATATTTTAAATTTTATATAATATAA
1 ATAAAAAT-TTTTAAATTAAATATAAAATAA
1170531 AT
1 AT
1170533 TTATTAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
30 8 0.29
31 20 0.71
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (30 bp):
ATAAAAATTTTTAAATTAAATATAAAATAA
Found at i:1170791 original size:17 final size:17
Alignment explanation
Indices: 1170771--1170803 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
1170761 AATTTAATTT
1170771 AATTTTAAAATAATTAA
1 AATTTTAAAATAATTAA
*
1170788 AATTTTAATATAATTA
1 AATTTTAAAATAATTA
1170804 TTAGATATAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTTTAAAATAATTAA
Found at i:1172245 original size:22 final size:22
Alignment explanation
Indices: 1172217--1172263 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
1172207 AATAAACTAT
*
1172217 AATTTAAACTTAAACTCATCTA
1 AATTTAAACTCAAACTCATCTA
*
1172239 AATTTAAACTCAAACTCATTTA
1 AATTTAAACTCAAACTCATCTA
1172261 AAT
1 AAT
1172264 AAAATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (22 bp):
AATTTAAACTCAAACTCATCTA
Found at i:1172821 original size:13 final size:14
Alignment explanation
Indices: 1172789--1172821 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
1172779 TTAAAATATT
1172789 TTAA-TTAAATTAA
1 TTAATTTAAATTAA
1172802 TTAATTTAAA-TAA
1 TTAATTTAAATTAA
1172815 TTAATTT
1 TTAATTT
1172822 TGTAACTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
TTAATTTAAATTAA
Found at i:1173879 original size:29 final size:30
Alignment explanation
Indices: 1173847--1173922 Score: 86
Period size: 29 Copynumber: 2.6 Consensus size: 30
1173837 ATATAAATAC
*
1173847 TTAACTTTTAATTTATATC-CAATAAACT-T
1 TTAACTTTTAATTTATATCAAAAT-AACTAT
*
1173876 TTAA-TCTTTAATTTACATCAAAATAACTAT
1 TTAACT-TTTAATTTATATCAAAATAACTAT
*
1173906 TTAGCTTTTAATTTATA
1 TTAACTTTTAATTTATA
1173923 CTTAAATAAA
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
28 1 0.03
29 20 0.51
30 17 0.44
31 1 0.03
ACGTcount: A:0.38, C:0.12, G:0.01, T:0.49
Consensus pattern (30 bp):
TTAACTTTTAATTTATATCAAAATAACTAT
Found at i:1173901 original size:86 final size:86
Alignment explanation
Indices: 1173736--1173897 Score: 209
Period size: 86 Copynumber: 1.9 Consensus size: 86
1173726 AAATAATATG
** * * *
1173736 ATATTTATTATATCTAAATAAATTTTTAACTTTTAATTTACAGCCATTAAGCTCTTAACCTTTCA
1 ATATTTATTATATCTAAATAAATACTTAACTTTTAATTTACAGCCAATAAACTCTTAACCTTTAA
*
1173801 TTTATATACAAATAAATCTCT
66 TTTACATACAAATAAATCTCT
* * * * * *
1173822 ATATTTATTATATTTATATAAATACTTAACTTTTAATTTATATCCAATAAACTTTTAATCTTTAA
1 ATATTTATTATATCTAAATAAATACTTAACTTTTAATTTACAGCCAATAAACTCTTAACCTTTAA
1173887 TTTACAT-CAAA
66 TTTACATACAAA
1173898 ATAACTATTT
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
85 4 0.06
86 60 0.94
ACGTcount: A:0.39, C:0.13, G:0.01, T:0.47
Consensus pattern (86 bp):
ATATTTATTATATCTAAATAAATACTTAACTTTTAATTTACAGCCAATAAACTCTTAACCTTTAA
TTTACATACAAATAAATCTCT
Found at i:1174695 original size:69 final size:67
Alignment explanation
Indices: 1174598--1174773 Score: 178
Period size: 69 Copynumber: 2.5 Consensus size: 67
1174588 ATAATACTTA
* * *
1174598 AAAAATAAATTTAAATTTTTATAAATAAAAATAAATTATAA-CTTAAAAAA-TTTAACTCATATA
1 AAAAATAAATTTAAAATTTTACAAATAAAAATAAA--AAAATCTTAAAAAATTTTAACTCATATA
1174661 CTCG
64 CTCG
*
1174665 AAAAATCAAATTTAAAAATTTTACACATAAAAATAAAAAAATCTTAAAAAATTTTAACTCGTATA
1 AAAAAT-AAATTT-AAAATTTTACAAATAAAAATAAAAAAATCTTAAAAAATTTTAACTC--AT-
*
1174730 ATCAAACT-A
61 AT---ACTCG
* *
1174739 AAAAATAAATTTAAAGTTTTATAAATAAAAATAAA
1 AAAAATAAATTTAAAATTTTACAAATAAAAATAAA
1174774 TCATATGTTA
Statistics
Matches: 91, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
67 9 0.10
68 15 0.16
69 28 0.31
71 2 0.02
72 22 0.24
73 6 0.07
74 6 0.07
75 3 0.03
ACGTcount: A:0.59, C:0.07, G:0.02, T:0.32
Consensus pattern (67 bp):
AAAAATAAATTTAAAATTTTACAAATAAAAATAAAAAAATCTTAAAAAATTTTAACTCATATACT
CG
Found at i:1174877 original size:74 final size:73
Alignment explanation
Indices: 1174800--1175654 Score: 735
Period size: 73 Copynumber: 11.9 Consensus size: 73
1174790 TAAACTTGTA
* * * ** * *
1174800 AAAAAATTAAATTCAAATAATTGTATCCAAAAAATAAATTTATACTTTTACAAATAGAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
*
1174865 TATAGCTT
66 TATATCTT
* * * * * * * *
1174873 AAAAAAATTTAAATTGATATAATCATA-CTTAAAAAACAAATTTAAACTTCTATAAATACAGATA
1 --AAAAATTTAAACTCATATAATCATATC-CAAAAAATAAATTTAAACTTTTACAAATAAAAATA
* *
1174937 AATAACATCTT
63 AATTATATCTT
* * * * * *
1174948 AAAATTTTAAATTCGTAAAATCATATCTAAAAAATAAATTTAAATTTTTACAAATAAAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
*
1175013 AATAGT-TT
66 TATA-TCTT
* * *
1175021 AAAATTTTAAACTCGTATAATCAAAT--AAAAAATAAA--T----TTTTACAAATAAAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
*
1175078 TATATTTT
66 TATATCTT
1175086 CAAAAATTTAAACTCATATAATCATA-CCTAAAAAATAAATTTAAA-TTTTCACAAATAAAAATA
1 -AAAAATTTAAACTCATATAATCATATCC-AAAAAATAAATTTAAACTTTT-ACAAATAAAAATA
* *
1175149 AAGTATATCCT
63 AATTATATCTT
* * * * *
1175160 AAAAATTTAAACTCATACAATCATA-CGCAATAAATAGATTTAAATTTTTATAAATAAAAATAAA
1 AAAAATTTAAACTCATATAATCATATC-CAAAAAATAAATTTAAACTTTTACAAATAAAAATAAA
1175224 TTATATCTTT
65 TTATATC-TT
* *
1175234 AAAATTTTAATA-T-AGTATAATCATA--CATAAAAATTAAATTTAAACTTTTACATATAAAAAT
1 AAAAATTTAA-ACTCA-TATAATCATATCCA-AAAAA-TAAATTTAAACTTTTACAAATAAAAAT
1175295 AAATTATATCTT
62 AAATTATATCTT
* * * * * * *
1175307 AAAAATTTTAACTCTTATAATAATA-CAAAAAAAAAACAAATTTAAACTTCTAAAAATAAAAATA
1 AAAAATTTAAACTCATATAATCATATC---CAAAAAATAAATTTAAACTTTTACAAATAAAAATA
*
1175371 AATAATA-CATT
63 AATTATATC-TT
** *
1175382 AAAAATTTAAACTCATAT-AT--TAAACAAAAAAGAAATTTAAACTTTTACAAATAAAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
* *
1175444 AATACCTT
66 TATATCTT
* * * * *
1175452 AAAAATTTAAACTCGTATAATCAAAT--AAAAAAGAAATTTAAACTTCTATAAATAAAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
*
1175515 AATATCTT
66 TATATCTT
* * * *
1175523 AAAAATTTAAACTCGTATAATTAAAT---AAAAA-AAA-TTATACTTTTACAAATAAAAATAAAT
1 AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
*
1175583 TATACCTT
66 TATATCTT
* * * *
1175591 AAAAATTTAAACTCATATAATTATA-CCTTAAAAACAAATTTAAACTTCTACAAATAATAAATAA
1 AAAAATTTAAACTCATATAATCATATCC-AAAAAATAAATTTAAACTTTTACAAATAA-AAATAA
1175655 TACTTTGAAT
Statistics
Matches: 658, Mismatches: 82, Indels: 81
0.80 0.10 0.10
Matches are distributed among these distances:
64 1 0.00
65 25 0.04
66 22 0.03
68 62 0.09
69 4 0.01
70 63 0.10
71 85 0.13
72 8 0.01
73 186 0.28
74 91 0.14
75 105 0.16
76 5 0.01
77 1 0.00
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (73 bp):
AAAAATTTAAACTCATATAATCATATCCAAAAAATAAATTTAAACTTTTACAAATAAAAATAAAT
TATATCTT
Found at i:1175008 original size:238 final size:230
Alignment explanation
Indices: 1174597--1175033 Score: 547
Period size: 238 Copynumber: 1.9 Consensus size: 230
1174587 TATAATACTT
* *
1174597 AAAAAATAAATTTAAATTTTTATAAATAAAAATAAATTATAACTTAAAAAATTTAACTCATATAC
1 AAAAAATAAATTTAAACTTTTACAAATAAAAATAAATTATAACTTAAAAAATTTAACTCATATAC
* * *
1174662 TCGAAAAATCAAATTTAAAAATTTTACACATAAAAATAAAAAAATCTTAAAAAATTTTAACTCGT
66 TCGAAAAAACAAATTTAAAAATTCTACAAATAAAAATAAAAAAATCTT-AAAAATTTTAACTCGT
* * *
1174727 ATAATCAAACTAAAAAATAAATTTAAAGTTTTATAAATAAAAATAAATCATA-TGTTAAAATTTT
130 AAAATCAAACTAAAAAATAAATTTAAAGTTTTACAAATAAAAATAAATAATAGT-TTAAAATTTT
1174791 AAACTTGTAAAAAAATTAAATTCAAATAATTGTATCC
194 AAACTTGTAAAAAAATTAAATTCAAATAATTGTATCC
* * * * *
1174828 AAAAAATAAATTTATACTTTTACAAATAGAAATAAATTATAGCTTAAAAAAATTTAAATTGATAT
1 AAAAAATAAATTTAAACTTTTACAAATAAAAATAAATTATAACTT-AAAAAATTT-AACTCATAT
* * * * * *
1174893 AATCATACTTAAAAAACAAATTT-AAACTTCTATAAATACAGATAAATAACATCTT-AAAATTTT
64 -A-C-T-C-GAAAAAACAAATTTAAAAATTCTACAAATAAAAATAAA-AAAATCTTAAAAATTTT
* * *
1174956 AAATTCGTAAAATCATATCTAAAAAATAAATTTAAATTTTTACAAATAAAAATAAATAATAGTTT
123 -AACTCGTAAAATCA-AACTAAAAAATAAATTTAAAGTTTTACAAATAAAAATAAATAATAGTTT
1175021 AAAATTTTAAACT
186 AAAATTTTAAACT
1175034 CGTATAATCA
Statistics
Matches: 173, Mismatches: 22, Indels: 15
0.82 0.10 0.07
Matches are distributed among these distances:
231 40 0.23
232 9 0.05
233 7 0.04
234 1 0.01
235 1 0.01
236 9 0.05
237 30 0.17
238 75 0.43
239 1 0.01
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (230 bp):
AAAAAATAAATTTAAACTTTTACAAATAAAAATAAATTATAACTTAAAAAATTTAACTCATATAC
TCGAAAAAACAAATTTAAAAATTCTACAAATAAAAATAAAAAAATCTTAAAAATTTTAACTCGTA
AAATCAAACTAAAAAATAAATTTAAAGTTTTACAAATAAAAATAAATAATAGTTTAAAATTTTAA
ACTTGTAAAAAAATTAAATTCAAATAATTGTATCC
Found at i:1175272 original size:147 final size:145
Alignment explanation
Indices: 1174828--1175654 Score: 788
Period size: 139 Copynumber: 5.7 Consensus size: 145
1174818 AATTGTATCC
* * * * * *
1174828 AAAAAATAAATTTATACTTTTACAAATAGAAATAAATTATAGCTTAAAAAAATTTAAATTGATAT
1 AAAAAATAAATTTA-AATTTTACAAATAAAAATAAATTATATCCT--AAAAATTTAAACTCATAT
* * * * *
1174893 AATCATACTTAAAAAACAAATTTAAACTTCTATAAATACAGATAAATAACATCTTAAAATTTTAA
63 AATCATACATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATCTTAAAAATTTAA
* * *
1174958 ATTCGTAAAATCATATC-T
128 ACTAGTATAATCATA-CAT
* * * *
1174976 AAAAAATAAATTTAAATTTTTACAAATAAAAATAAATAATAGT-TTAAAATTTTAAACTCGTATA
1 AAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATA-TCCTAAAAATTTAAACTCATATA
* * * *
1175040 ATCA-A-ATAAAAAATAAA-TT----TT-TACAAATAAAAATAAATTATATTTTCAAAAATTTAA
64 ATCATACATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATCTT-AAAAATTTAA
*
1175097 ACTCA-TATAATCATACCT
128 ACT-AGTATAATCATACAT
* *
1175115 AAAAAATAAATTTAAATTTTCACAAATAAAAATAAAGTATATCCTAAAAATTTAAACTCATACAA
1 AAAAAATAAATTTAAATTTT-ACAAATAAAAATAAATTATATCCTAAAAATTTAAACTCATATAA
** * * * * * * *
1175180 TCATACGCAATAAATAGATTTAAATTTTTATAAATAAAAATAAATTATATCTTTAAAATTTTAAT
65 TCATACATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATC-TTAAAAATTTAA-
1175245 A-TAGTATAATCATACAT
128 ACTAGTATAATCATACAT
* * * * *
1175262 AAAAATTAAATTTAAACTTTTACATATAAAAATAAATTATATCTTAAAAATTTTAACTCTTATAA
1 AAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATATCCTAAAAATTTAAACTCATATAA
* * *
1175327 TAATACAAAAAAAAAACAAATTTAAACTTCTAAAAATAAAAATAAATAATA-CATTAAAAATTTA
65 TCATAC--ATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATC-TTAAAAATTTA
* *
1175391 AACTCA-TAT-AT--TAAAC
127 AACT-AGTATAATCATACAT
* * *
1175407 AAAAAAGAAATTTAAACTTTTACAAATAAAAATAAATAATA-CCTTAAAAATTTAAACTCGTATA
1 AAAAAATAAATTTAAA-TTTTACAAATAAAAATAAATTATATCC-TAAAAATTTAAACTCATATA
*
1175471 ATCA-A-ATAAAAAAGAAATTTAAACTTCTATAAATAAAAATAAATAATATCTTAAAAATTTAAA
64 ATCATACATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATCTTAAAAATTTAAA
* *
1175534 CTCGTATAAT--TAAAT
129 CTAGTATAATCATACAT
*
1175549 -AAAAA-AAA-TTATACTTTTACAAATAAAAATAAATTATA-CCTTAAAAATTTAAACTCATATA
1 AAAAAATAAATTTA-AATTTTACAAATAAAAATAAATTATATCC-TAAAAATTTAAACTCATATA
* * * *
1175610 ATTATACCTTAAAAACAAATTTAAACTTCTACAAATAATAAATAA
64 ATCATACATAAAAAACAAATTTAAACTTCTATAAATAA-AAATAA
1175655 TACTTTGAAT
Statistics
Matches: 572, Mismatches: 76, Indels: 68
0.80 0.11 0.09
Matches are distributed among these distances:
138 25 0.04
139 129 0.23
140 6 0.01
141 98 0.17
142 15 0.03
143 2 0.00
144 12 0.02
145 62 0.11
146 22 0.04
147 105 0.18
148 61 0.11
149 35 0.06
ACGTcount: A:0.56, C:0.09, G:0.02, T:0.34
Consensus pattern (145 bp):
AAAAAATAAATTTAAATTTTACAAATAAAAATAAATTATATCCTAAAAATTTAAACTCATATAAT
CATACATAAAAAACAAATTTAAACTTCTATAAATAAAAATAAATAATATCTTAAAAATTTAAACT
AGTATAATCATACAT
Found at i:1175388 original size:40 final size:39
Alignment explanation
Indices: 1175344--1175535 Score: 118
Period size: 40 Copynumber: 5.3 Consensus size: 39
1175334 AAAAAAAAAC
1175344 AAATTTAAACTTCTAAAAATAAAAATAAATAATACATTAA
1 AAATTTAAACTTCT-AAAATAAAAATAAATAATACATTAA
* * *
1175384 AAATTTAAAC-TC----AT-ATATTAAACAA-A-A--AA
1 AAATTTAAACTTCTAAAATAAAAATAAATAATACATTAA
* *
1175413 GAAATTTAAACTTTTACAAATAAAAATAAATAATACCTTAA
1 -AAATTTAAACTTCTA-AAATAAAAATAAATAATACATTAA
* * *
1175454 AAATTTAAAC-TCGTATAAT-CAAAT--A-AA-A-A--AG
1 AAATTTAAACTTC-TAAAATAAAAATAAATAATACATTAA
1175485 AAATTTAAACTTCTATAAATAAAAATAAATAATATC-TTAA
1 AAATTTAAACTTCTA-AAATAAAAATAAATAATA-CATTAA
1175525 AAATTTAAACT
1 AAATTTAAACT
1175536 CGTATAATTA
Statistics
Matches: 112, Mismatches: 16, Indels: 48
0.64 0.09 0.27
Matches are distributed among these distances:
29 2 0.02
30 10 0.09
31 15 0.13
32 6 0.05
33 12 0.11
34 3 0.03
35 3 0.03
36 5 0.04
37 9 0.08
38 5 0.04
39 6 0.05
40 34 0.30
41 2 0.02
ACGTcount: A:0.59, C:0.09, G:0.02, T:0.31
Consensus pattern (39 bp):
AAATTTAAACTTCTAAAATAAAAATAAATAATACATTAA
Found at i:1175596 original size:24 final size:24
Alignment explanation
Indices: 1175545--1175624 Score: 72
Period size: 29 Copynumber: 3.1 Consensus size: 24
1175535 TCGTATAATT
* *
1175545 AAATAAAAA-AAATTATACTTTTAC
1 AAATAAAAATAAATTATAC-CTTAA
1175569 AAATAAAAATAAATTATACCTTAA
1 AAATAAAAATAAATTATACCTTAA
*
1175593 AAATTTAAACTCATATAATTATACCTTAA
1 AAA--TAAA--AATA-AATTATACCTTAA
1175622 AAA
1 AAA
1175625 CAAATTTAAA
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
24 15 0.32
25 9 0.19
26 4 0.09
28 3 0.06
29 16 0.34
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (24 bp):
AAATAAAAATAAATTATACCTTAA
Found at i:1176289 original size:15 final size:14
Alignment explanation
Indices: 1176227--1176290 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 14
1176217 TTTTAATATA
1176227 ATTATAAAAAATTAT
1 ATTA-AAAAAATTAT
*
1176242 ATTTTAAAAAA-TAT
1 A-TTAAAAAAATTAT
1176256 -TTAAAAAAATATAAAT
1 ATTAAAAAAAT-T--AT
1176272 ATTAAAAAAATTATT
1 ATTAAAAAAATTA-T
1176287 ATTA
1 ATTA
1176291 TTATTATTGT
Statistics
Matches: 40, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
12 8 0.20
14 5 0.12
15 12 0.30
16 5 0.12
17 10 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
ATTAAAAAAATTAT
Found at i:1177430 original size:2 final size:2
Alignment explanation
Indices: 1177423--1177451 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
1177413 TTCATGCAGC
1177423 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1177452 GAACTGGAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1179298 original size:21 final size:19
Alignment explanation
Indices: 1179220--1179301 Score: 59
Period size: 16 Copynumber: 4.5 Consensus size: 19
1179210 TTTTAATATT
1179220 TTTTATTT--AAATTT-AA
1 TTTTATTTAAAAATTTAAA
* *
1179236 TTCTATTT--AAATATAAA
1 TTTTATTTAAAAATTTAAA
**
1179253 -TTTATTTAAAAATTTATT
1 TTTTATTTAAAAATTTAAA
1179271 TTATTATTTAAAAATATTAAAA
1 TT-TTATTTAAAAAT-TT-AAA
1179293 TTTTATTTA
1 TTTTATTTA
1179302 TATTAATATT
Statistics
Matches: 51, Mismatches: 8, Indels: 9
0.75 0.12 0.13
Matches are distributed among these distances:
16 18 0.35
17 2 0.04
18 6 0.12
19 1 0.02
20 12 0.24
21 9 0.18
22 3 0.06
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (19 bp):
TTTTATTTAAAAATTTAAA
Found at i:1179487 original size:23 final size:23
Alignment explanation
Indices: 1179450--1179534 Score: 84
Period size: 23 Copynumber: 3.7 Consensus size: 23
1179440 ATAAATTTAA
* * *
1179450 ATATAAAATAATTAATACATATG
1 ATATAATATATTTAATAAATATG
*
1179473 ATATGATATATTTAAATATAAT-T-
1 ATATAATATATTT-AATA-AATATG
1179496 ATATAAATATATTTAATAAATATG
1 ATAT-AATATATTTAATAAATATG
*
1179520 ATATTATATATTTAA
1 ATATAATATATTTAA
1179535 ATATAATTAA
Statistics
Matches: 51, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
22 3 0.06
23 29 0.57
24 17 0.33
25 2 0.04
ACGTcount: A:0.52, C:0.01, G:0.04, T:0.44
Consensus pattern (23 bp):
ATATAATATATTTAATAAATATG
Found at i:1179516 original size:13 final size:14
Alignment explanation
Indices: 1179485--1179529 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
1179475 ATGATATATT
1179485 TAAATATAATTATA
1 TAAATATAATTATA
*
1179499 TAAATATATTTA-A
1 TAAATATAATTATA
1179512 TAAATATGATATTATA
1 TAAATAT-A-ATTATA
1179528 TA
1 TA
1179530 TTTAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 8 0.31
14 12 0.46
15 3 0.12
16 3 0.12
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (14 bp):
TAAATATAATTATA
Found at i:1179519 original size:47 final size:46
Alignment explanation
Indices: 1179450--1179543 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 46
1179440 ATAAATTTAA
*
1179450 ATATAAAATAATTAATACATATGATATGATATATTTAAATATAATT
1 ATATAAAATAATTAATAAATATGATATGATATATTTAAATATAATT
* *
1179496 ATATAAATATATTTAATAAATATGATATTATATATTTAAATATAATT
1 ATATAAA-ATAATTAATAAATATGATATGATATATTTAAATATAATT
1179543 A
1 A
1179544 ATATTATTGG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
46 7 0.16
47 37 0.84
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.44
Consensus pattern (46 bp):
ATATAAAATAATTAATAAATATGATATGATATATTTAAATATAATT
Found at i:1179547 original size:24 final size:23
Alignment explanation
Indices: 1179473--1179550 Score: 88
Period size: 24 Copynumber: 3.3 Consensus size: 23
1179463 AATACATATG
*
1179473 ATATGATATATTTAAATATAATT
1 ATATTATATATTTAAATATAATT
*
1179496 ATATAAATATATTT-AATA-AATAT
1 ATAT-TATATATTTAAATATAAT-T
1179519 GATATTATATATTTAAATATAATT
1 -ATATTATATATTTAAATATAATT
1179543 AATATTAT
1 -ATATTAT
1179551 TGGTATCTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
22 3 0.06
23 17 0.36
24 24 0.51
25 3 0.06
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (23 bp):
ATATTATATATTTAAATATAATT
Found at i:1180971 original size:19 final size:20
Alignment explanation
Indices: 1180949--1180988 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
1180939 AAATACTAAT
*
1180949 ATAAAATA-ATATTTAAATA
1 ATAAAATATATATTAAAATA
1180968 ATAAAATATATATTAAAATA
1 ATAAAATATATATTAAAATA
1180988 A
1 A
1180989 AATTTTAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (20 bp):
ATAAAATATATATTAAAATA
Found at i:1181019 original size:25 final size:24
Alignment explanation
Indices: 1180986--1181033 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
1180976 TATATTAAAA
1180986 TAAAATTTTAAAT-TAATATAATTT
1 TAAAATTTTAAATCTAATA-AATTT
*
1181010 TAAAATTTTTGAATCTAATAAATT
1 TAAAA-TTTTAAATCTAATAAATT
1181034 CACTAACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
24 5 0.24
25 11 0.52
26 5 0.24
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (24 bp):
TAAAATTTTAAATCTAATAAATTT
Found at i:1182299 original size:15 final size:15
Alignment explanation
Indices: 1182281--1182312 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
1182271 ATAATTTCTA
*
1182281 TATTTATATTATATT
1 TATTTAAATTATATT
1182296 TATTTAAATTATATT
1 TATTTAAATTATATT
1182311 TA
1 TA
1182313 AAATATTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (15 bp):
TATTTAAATTATATT
Found at i:1182319 original size:20 final size:20
Alignment explanation
Indices: 1182296--1182356 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
1182286 ATATTATATT
*
1182296 TATT-TAAATTATATTTAAAA
1 TATTATAAATT-TATATAAAA
*
1182316 TATTATATATTTATATAAAA
1 TATTATAAATTTATATAAAA
* *
1182336 TAATAATTAATATTATATAAA
1 T-ATTATAAAT-TTATATAAA
1182357 TTTTTTAATA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 13 0.39
21 11 0.33
22 9 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
TATTATAAATTTATATAAAA
Found at i:1183015 original size:21 final size:21
Alignment explanation
Indices: 1182974--1183021 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
1182964 TTAAAATTAA
**
1182974 AAATTATTTATATTAATAATT
1 AAATTATTTATAACAATAATT
1182995 AAATT-TTTATAACAATAAATT
1 AAATTATTTATAACAAT-AATT
*
1183016 TAATTA
1 AAATTA
1183022 AAAATTTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 9 0.41
21 13 0.59
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (21 bp):
AAATTATTTATAACAATAATT
Found at i:1183290 original size:5 final size:5
Alignment explanation
Indices: 1183280--1183312 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
1183270 TAATTATTAA
1183280 AATTT AATTT AATTT AATTT AA-TT AATTT AATT
1 AATTT AATTT AATTT AATTT AATTT AATTT AATT
1183313 AATAAAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.15
5 23 0.85
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (5 bp):
AATTT
Found at i:1183307 original size:9 final size:9
Alignment explanation
Indices: 1183283--1183315 Score: 57
Period size: 9 Copynumber: 3.6 Consensus size: 9
1183273 TTATTAAAAT
1183283 TTAATTTAA
1 TTAATTTAA
1183292 TTTAATTTAA
1 -TTAATTTAA
1183302 TTAATTTAA
1 TTAATTTAA
1183311 TTAAT
1 TTAAT
1183316 AAAAAATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TTAATTTAA
Found at i:1183978 original size:34 final size:34
Alignment explanation
Indices: 1183940--1184014 Score: 82
Period size: 34 Copynumber: 2.2 Consensus size: 34
1183930 TTCACTTGAT
*
1183940 TTAAT-ATATATTAAAGAATAATAAATTTAA-TAAA
1 TTAATAAT-TATTAAAGAATAA-AAATTAAATTAAA
* **
1183974 TTAATAATTTTTAATTAATAAAAATTAAATTAAA
1 TTAATAATTATTAAAGAATAAAAATTAAATTAAA
1184008 TTAATAA
1 TTAATAA
1184015 AATATTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
33 7 0.20
34 26 0.74
35 2 0.06
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (34 bp):
TTAATAATTATTAAAGAATAAAAATTAAATTAAA
Found at i:1184587 original size:12 final size:13
Alignment explanation
Indices: 1184544--1184589 Score: 60
Period size: 12 Copynumber: 3.6 Consensus size: 13
1184534 TTATATTTTA
1184544 TTTAAAT-TTAAT
1 TTTAAATATTAAT
*
1184556 TATAAATATTAAT
1 TTTAAATATTAAT
1184569 ATTTAAATATT-AT
1 -TTTAAATATTAAT
1184582 TTTAAATA
1 TTTAAATA
1184590 ATAGTGTAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
12 14 0.47
13 7 0.23
14 9 0.30
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTAAATATTAAT
Found at i:1185227 original size:28 final size:28
Alignment explanation
Indices: 1185196--1185250 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 28
1185186 TTAAAAAAAT
*
1185196 AATTATTAATGATAATTTTTTATTTTTA
1 AATTATTAAAGATAATTTTTTATTTTTA
* * *
1185224 AATTTTTAAAGTTGATTTTTTATTTTT
1 AATTATTAAAGATAATTTTTTATTTTT
1185251 TAGATAATCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.05, T:0.64
Consensus pattern (28 bp):
AATTATTAAAGATAATTTTTTATTTTTA
Found at i:1185572 original size:18 final size:19
Alignment explanation
Indices: 1185516--1185592 Score: 81
Period size: 19 Copynumber: 4.1 Consensus size: 19
1185506 ATTTTAATTT
*
1185516 ATATAAA-ATATAAGTATATT
1 ATATAAATATATAA--ATATA
*
1185536 ATATATAAT-TATAATTATA
1 ATATA-AATATATAAATATA
1185555 ATA-AAATATATAAATATA
1 ATATAAATATATAAATATA
1185573 ATATAAATATATAAAT-TA
1 ATATAAATATATAAATATA
1185591 AT
1 AT
1185593 GAACGTGCTA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
17 3 0.06
18 17 0.34
19 18 0.36
20 5 0.10
21 7 0.14
ACGTcount: A:0.58, C:0.00, G:0.01, T:0.40
Consensus pattern (19 bp):
ATATAAATATATAAATATA
Found at i:1185577 original size:37 final size:37
Alignment explanation
Indices: 1185489--1185586 Score: 98
Period size: 37 Copynumber: 2.7 Consensus size: 37
1185479 ATTTTATATA
*
1185489 ATATAAAT-TAATA-ATCAATTTTAATTTATATAAAAT
1 ATATAAATATAATATAT-AATTATAATTTATATAAAAT
* *
1185525 ATA-AGTATATTATATATAATTATAA-TTATAATAAAAT
1 ATATA-AATATAATATATAATTATAATTTAT-ATAAAAT
1185562 ATATAAATATAATATA-AATATATAA
1 ATATAAATATAATATATAAT-TATAA
1185587 ATTAATGAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
35 1 0.02
36 12 0.24
37 35 0.69
38 3 0.06
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.42
Consensus pattern (37 bp):
ATATAAATATAATATATAATTATAATTTATATAAAAT
Found at i:1186825 original size:2 final size:2
Alignment explanation
Indices: 1186818--1186853 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
1186808 ATGTCTTTTC
1186818 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1186854 ATAATGATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1187717 original size:10 final size:10
Alignment explanation
Indices: 1187686--1187721 Score: 54
Period size: 10 Copynumber: 3.5 Consensus size: 10
1187676 CCTTGGAGTA
1187686 AATTAAGAAT
1 AATTAAGAAT
1187696 ATATTAAGAAT
1 A-ATTAAGAAT
*
1187707 AATTAAAAAT
1 AATTAAGAAT
1187717 AATTA
1 AATTA
1187722 TGCGATTACG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
10 14 0.58
11 10 0.42
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (10 bp):
AATTAAGAAT
Found at i:1189523 original size:13 final size:14
Alignment explanation
Indices: 1189498--1189528 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
1189488 ATAAATTTGA
1189498 AATTTAGTATAATT
1 AATTTAGTATAATT
1189512 AATTTA-TATAATT
1 AATTTAGTATAATT
1189525 AATT
1 AATT
1189529 ATTATTTGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (14 bp):
AATTTAGTATAATT
Found at i:1190059 original size:3 final size:3
Alignment explanation
Indices: 1190045--1190080 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
1190035 TAAATTAAAA
*
1190045 ATT ATA ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1190081 TTGCAATGCA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:1190153 original size:5 final size:5
Alignment explanation
Indices: 1190143--1190167 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1190133 TATTAATATG
1190143 AAATA AAATA AAATA AAATA AAATA
1 AAATA AAATA AAATA AAATA AAATA
1190168 TTCCCTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAATA
Found at i:1190267 original size:2 final size:2
Alignment explanation
Indices: 1190260--1190292 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
1190250 TATGTATAAG
*
1190260 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1190293 GTAAACAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1190627 original size:3 final size:3
Alignment explanation
Indices: 1190619--1190658 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
1190609 GTATTGTGAC
1190619 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1190659 AAACTCCTAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:1190774 original size:35 final size:36
Alignment explanation
Indices: 1190717--1190785 Score: 104
Period size: 35 Copynumber: 1.9 Consensus size: 36
1190707 TCGTATTCAA
** *
1190717 ATATTTTTTATATGTTTATAATATAATTAAATTATT
1 ATATTTTTTATAAATTTATAATATAATAAAATTATT
1190753 ATATTTTTTATAAATTT-TAATATAATAAAATTA
1 ATATTTTTTATAAATTTATAATATAATAAAATTA
1190786 CATACATGTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
35 15 0.50
36 15 0.50
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (36 bp):
ATATTTTTTATAAATTTATAATATAATAAAATTATT
Found at i:1190856 original size:23 final size:21
Alignment explanation
Indices: 1190802--1190863 Score: 63
Period size: 23 Copynumber: 2.9 Consensus size: 21
1190792 TGTATTTATA
*
1190802 TCATAT-TTATTTTATTTATT
1 TCATATCTTATTTTATTAATT
*
1190822 TCATATCATATTTTAATTAATTT
1 TCATATCTTATTTT-ATTAA-TT
*
1190845 TTATATCTTATTTATATTA
1 TCATATCTTATTT-TATTA
1190864 TATAATCGTA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
20 6 0.18
21 6 0.18
22 4 0.12
23 17 0.50
24 1 0.03
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (21 bp):
TCATATCTTATTTTATTAATT
Found at i:1191273 original size:14 final size:13
Alignment explanation
Indices: 1191256--1191298 Score: 52
Period size: 14 Copynumber: 3.2 Consensus size: 13
1191246 TAAAAATAAG
1191256 TAAAATAAAAAA-
1 TAAAATAAAAAAT
1191268 TATAAATATAAAAAT
1 TA-AAATA-AAAAAT
1191283 TAAAATAAAATAAT
1 TAAAATAAAA-AAT
1191297 TA
1 TA
1191299 TTTAATTACA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.07
13 8 0.30
14 15 0.56
15 2 0.07
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (13 bp):
TAAAATAAAAAAT
Found at i:1192221 original size:22 final size:21
Alignment explanation
Indices: 1192196--1192241 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
1192186 GTTAAATTTT
1192196 AAAGAAGAAAAAAAAAAGACAA
1 AAAGAAGAAAAAAAAAAGA-AA
* **
1192218 AAAGGAGAAAGGAAAAAGAAA
1 AAAGAAGAAAAAAAAAAGAAA
1192239 AAA
1 AAA
1192242 CAGTGTTTTC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 5 0.24
22 16 0.76
ACGTcount: A:0.78, C:0.02, G:0.20, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAAAAAAAAGAAA
Found at i:1194483 original size:21 final size:22
Alignment explanation
Indices: 1194450--1194493 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
1194440 TTACTTACCT
1194450 TATTATATATTAAAAAAATTAA
1 TATTATATATTAAAAAAATTAA
* **
1194472 TATTTTAT-TTAAATTAATTAA
1 TATTATATATTAAAAAAATTAA
1194493 T
1 T
1194494 TAAGATAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
TATTATATATTAAAAAAATTAA
Found at i:1195313 original size:5 final size:5
Alignment explanation
Indices: 1195303--1195327 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
1195293 AAAGGAACCA
1195303 AAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAAT
1195328 CATAATATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
AAAAT
Found at i:1196842 original size:2 final size:2
Alignment explanation
Indices: 1196835--1196861 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
1196825 AATGAAAGAA
1196835 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1196862 GAGAGAGAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1197227 original size:14 final size:14
Alignment explanation
Indices: 1197183--1197228 Score: 56
Period size: 16 Copynumber: 3.1 Consensus size: 14
1197173 ATCGATTTAT
1197183 TAAAATATAAATATA
1 TAAAAT-TAAATATA
1197198 TAAAATTTAAAATATA
1 TAAAA-TT-AAATATA
*
1197214 TAAAATTAATTATA
1 TAAAATTAAATATA
1197228 T
1 T
1197229 TTATGTAAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 7 0.25
15 8 0.29
16 13 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAATTAAATATA
Found at i:1197954 original size:6 final size:6
Alignment explanation
Indices: 1197943--1197969 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
1197933 TGCAGATAAT
1197943 TGGCTA TGGCTA TGGCTA TGGCTA TGG
1 TGGCTA TGGCTA TGGCTA TGGCTA TGG
1197970 GTTGCCTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.37, T:0.33
Consensus pattern (6 bp):
TGGCTA
Found at i:1199179 original size:20 final size:20
Alignment explanation
Indices: 1199150--1199204 Score: 69
Period size: 20 Copynumber: 2.8 Consensus size: 20
1199140 TTGAGTTGAA
1199150 TAAAATTTAAAAATTAATAT
1 TAAAATTTAAAAATTAATAT
**
1199170 TATTATTT-AAAA-TAATAT
1 TAAAATTTAAAAATTAATAT
1199188 TAAAATTTTAAAAATTA
1 TAAAA-TTTAAAAATTA
1199205 TTTTATATTA
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
18 9 0.32
19 7 0.25
20 10 0.36
21 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TAAAATTTAAAAATTAATAT
Found at i:1199195 original size:18 final size:19
Alignment explanation
Indices: 1199150--1199200 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 19
1199140 TTGAGTTGAA
1199150 TAAAATTTAAAAATTAATAT
1 TAAAATTT-AAAATTAATAT
**
1199170 TATTATTTAAAA-TAATAT
1 TAAAATTTAAAATTAATAT
1199188 TAAAATTTTAAAA
1 TAAAA-TTTAAAA
1199201 ATTATTTTAT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 9 0.35
19 11 0.42
20 6 0.23
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (19 bp):
TAAAATTTAAAATTAATAT
Found at i:1200970 original size:18 final size:18
Alignment explanation
Indices: 1200930--1200971 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1200920 TCAAAGATAT
*
1200930 TTTTTATTATTAAATTTA
1 TTTTTATTATTAAAGTTA
* *
1200948 ATTTTATTATTAACGTTA
1 TTTTTATTATTAAAGTTA
1200966 TTTTTA
1 TTTTTA
1200972 ATAATATTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.64
Consensus pattern (18 bp):
TTTTTATTATTAAAGTTA
Found at i:1201814 original size:21 final size:21
Alignment explanation
Indices: 1201785--1201825 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
1201775 ATATATTTAA
1201785 TAAAAAATTTAAAATAATAAT
1 TAAAAAATTTAAAATAATAAT
* * *
1201806 TAAATAATTTTAAATTATAA
1 TAAAAAATTTAAAATAATAA
1201826 ATATCGATTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
TAAAAAATTTAAAATAATAAT
Found at i:1202773 original size:2 final size:2
Alignment explanation
Indices: 1202766--1202807 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
1202756 TTAAACCCAA
1202766 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1202808 GAGCTAGCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1205010 original size:19 final size:20
Alignment explanation
Indices: 1204982--1205021 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
1204972 ATATTATTAT
*
1204982 TTAAATTAATATTA-AATAA
1 TTAAAATAATATTATAATAA
*
1205001 TTAAAATAATTTTATAATAA
1 TTAAAATAATATTATAATAA
1205021 T
1 T
1205022 AATTATAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TTAAAATAATATTATAATAA
Found at i:1205022 original size:23 final size:23
Alignment explanation
Indices: 1204996--1205047 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
1204986 ATTAATATTA
*
1204996 AATAATTA-AAATAATTTTATAAT
1 AATAATTATAAATAAATTTA-AAT
*
1205019 AATAATTATAATTAAATTTAAAT
1 AATAATTATAAATAAATTTAAAT
1205042 AA-AATT
1 AATAATT
1205048 TTTATTATGA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
22 4 0.15
23 13 0.50
24 9 0.35
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (23 bp):
AATAATTATAAATAAATTTAAAT
Found at i:1207369 original size:20 final size:20
Alignment explanation
Indices: 1207346--1207390 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
1207336 TCTTTTAAAA
* * *
1207346 TTTTAAATATAATTTTTTAT
1 TTTTAAATAAAATTATTAAT
*
1207366 TTTTTAATAAAATTATTAAT
1 TTTTAAATAAAATTATTAAT
1207386 TTTTA
1 TTTTA
1207391 TTAATTTTTA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (20 bp):
TTTTAAATAAAATTATTAAT
Found at i:1207393 original size:10 final size:10
Alignment explanation
Indices: 1207378--1207402 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
1207368 TTTAATAAAA
1207378 TTATTAATTT
1 TTATTAATTT
1207388 TTATTAATTT
1 TTATTAATTT
1207398 TTATT
1 TTATT
1207403 TTATAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TTATTAATTT
Found at i:1208611 original size:2 final size:2
Alignment explanation
Indices: 1208606--1208656 Score: 95
Period size: 2 Copynumber: 26.0 Consensus size: 2
1208596 ATATATATAT
1208606 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1208648 AG AG -G AG AG
1 AG AG AG AG AG
1208657 CTATGCAAGC
Statistics
Matches: 48, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 47 0.98
ACGTcount: A:0.49, C:0.00, G:0.51, T:0.00
Consensus pattern (2 bp):
AG
Found at i:1209419 original size:23 final size:23
Alignment explanation
Indices: 1209385--1209445 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
1209375 ATAGTATTTT
*
1209385 AATTAATTATAATAAATATAAAA
1 AATTAATAATAATAAATATAAAA
* *
1209408 AATTAATAATAAAAAATATCAAA
1 AATTAATAATAATAAATATAAAA
*
1209431 AA-TCATAA-AATAAAT
1 AATTAATAATAATAAAT
1209446 CGTAACGTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 6 0.18
22 5 0.15
23 22 0.67
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (23 bp):
AATTAATAATAATAAATATAAAA
Found at i:1212042 original size:31 final size:31
Alignment explanation
Indices: 1212004--1212062 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
1211994 CTTTACATTG
*
1212004 AAACTTAATGTTAAATTTTA-CGATTATATTA
1 AAACTTAATATTAAATTTTATC-ATTATATTA
1212035 AAACTTAATATTAAATTTTATCATTATA
1 AAACTTAATATTAAATTTTATCATTATA
1212063 CTTCAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.44, C:0.07, G:0.03, T:0.46
Consensus pattern (31 bp):
AAACTTAATATTAAATTTTATCATTATATTA
Found at i:1214113 original size:29 final size:29
Alignment explanation
Indices: 1214080--1214139 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 29
1214070 TTTTATAAGA
*
1214080 TTAAAAATAATAATAATTTGATAAATTAT
1 TTAAAAATAATAATAATTTAATAAATTAT
* * *
1214109 TTAAAAATAATTATATTTTAATAATTTAT
1 TTAAAAATAATAATAATTTAATAAATTAT
1214138 TT
1 TT
1214140 TGATTTTAAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (29 bp):
TTAAAAATAATAATAATTTAATAAATTAT
Found at i:1217829 original size:20 final size:20
Alignment explanation
Indices: 1217795--1217838 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
1217785 AAAAATTGAT
1217795 AAAATATAATGATTAAATTAAA
1 AAAATATAA-GATTAAA-TAAA
*
1217817 AAAATATAA-ATTATATAAA
1 AAAATATAAGATTAAATAAA
1217836 AAA
1 AAA
1217839 TTATGAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
22 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAAATATAAGATTAAATAAA
Found at i:1218254 original size:16 final size:16
Alignment explanation
Indices: 1218233--1218266 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1218223 AAATATTTAA
1218233 ATATTT-AATTTAATTT
1 ATATTTAAATTT-ATTT
1218249 ATATTTAAATTTATTT
1 ATATTTAAATTTATTT
1218265 AT
1 AT
1218267 TTATTATTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATATTTAAATTTATTT
Found at i:1218274 original size:21 final size:22
Alignment explanation
Indices: 1218225--1218279 Score: 69
Period size: 21 Copynumber: 2.5 Consensus size: 22
1218215 AATTTTTAAA
1218225 ATATTTAAATATTTAATTTAATTT
1 ATATTT-AA-ATTTAATTTAATTT
1218249 ATATTTAAATTT-ATTT-ATTT
1 ATATTTAAATTTAATTTAATTT
1218269 ATTATTTAAAT
1 A-TATTTAAAT
1218280 ATCATCGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
20 5 0.17
21 13 0.43
22 4 0.13
23 2 0.07
24 6 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATTTAAATTTAATTTAATTT
Found at i:1219068 original size:19 final size:19
Alignment explanation
Indices: 1219033--1219070 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
1219023 GATATATTTA
*
1219033 ATATATTTTTAAATTTTTT
1 ATATATTTTAAAATTTTTT
*
1219052 ATATA-TTTAAAAGTTTTT
1 ATATATTTTAAAATTTTTT
1219070 A
1 A
1219071 AAAAATTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.61
Consensus pattern (19 bp):
ATATATTTTAAAATTTTTT
Found at i:1223643 original size:18 final size:16
Alignment explanation
Indices: 1223620--1223654 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
1223610 TTTAAAAATA
1223620 AATATTTAATATATTTAT
1 AATATTT-ATA-ATTTAT
1223638 AATATTTATAATTTAT
1 AATATTTATAATTTAT
1223654 A
1 A
1223655 TAAATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.41
17 3 0.18
18 7 0.41
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
AATATTTATAATTTAT
Found at i:1224130 original size:19 final size:20
Alignment explanation
Indices: 1224097--1224137 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
1224087 AAATTACAAA
*
1224097 TATTTATTTATTTTACCATC
1 TATTTATTTACTTTACCATC
1224117 TATTTATTT-CTTTACCATC
1 TATTTATTTACTTTACCATC
1224136 TA
1 TA
1224138 AATAAATTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.24, C:0.17, G:0.00, T:0.59
Consensus pattern (20 bp):
TATTTATTTACTTTACCATC
Found at i:1225241 original size:21 final size:21
Alignment explanation
Indices: 1225184--1225242 Score: 52
Period size: 21 Copynumber: 2.9 Consensus size: 21
1225174 AATTATATTT
1225184 TATTATTTTAAT--AATAAAAA
1 TATT-TTTTAATAAAATAAAAA
** * *
1225204 TA-TTAATATTAATATAAAAA
1 TATTTTTTAATAAAATAAAAA
1225224 TATTTTTTAATAAAATAAA
1 TATTTTTTAATAAAATAAA
1225243 TATCAATTTA
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
18 4 0.14
19 1 0.04
20 11 0.39
21 12 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TATTTTTTAATAAAATAAAAA
Found at i:1225258 original size:6 final size:6
Alignment explanation
Indices: 1225247--1225308 Score: 76
Period size: 6 Copynumber: 10.7 Consensus size: 6
1225237 AATAAATATC
**
1225247 AATTTA AATTTA AATAAA AATTTA AA-TTA AA-TTA AA-TTA AATTTA
1 AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA AATTTA
1225292 AATTTA AATTTA TAATT
1 AATTTA AATTTA -AATT
1225309 ATTAATCTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
5 15 0.30
6 31 0.62
7 4 0.08
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (6 bp):
AATTTA
Found at i:1225264 original size:22 final size:21
Alignment explanation
Indices: 1225236--1225300 Score: 68
Period size: 21 Copynumber: 3.2 Consensus size: 21
1225226 TTTTTTAATA
1225236 AAATAAATATCAATTTAAATTT
1 AAATAAATAT-AATTTAAATTT
1225258 AAAT-AA-A-AATTTAAA-TT
1 AAATAAATATAATTTAAATTT
1225275 AAATTAAAT-TAAATTTAAATTT
1 AAA-TAAATAT-AATTTAAATTT
1225297 AAAT
1 AAAT
1225301 TTATAATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 13
0.74 0.00 0.26
Matches are distributed among these distances:
17 5 0.14
18 9 0.24
19 2 0.05
20 1 0.03
21 11 0.30
22 9 0.24
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (21 bp):
AAATAAATATAATTTAAATTT
Found at i:1225278 original size:5 final size:5
Alignment explanation
Indices: 1225268--1225301 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
1225258 AAATAAAAAT
1225268 TTAAA TTAAA TTAAA TTAAA TTTAAA TTTAAA TT
1 TTAAA TTAAA TTAAA TTAAA -TTAAA -TTAAA TT
1225302 TATAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 17 0.61
6 11 0.39
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (5 bp):
TTAAA
Found at i:1226331 original size:97 final size:97
Alignment explanation
Indices: 1226165--1226356 Score: 330
Period size: 97 Copynumber: 2.0 Consensus size: 97
1226155 TTAGGCATAC
* * **
1226165 AAGGAAGTAATTTCCAAGTCTAAGGTCGTGCGGTTTGCTAGGCTAAAGTCCAGACCCGTGACAGT
1 AAGGAAGTAATTTCCAAGCCTAAGGCCACGCGGTTTGCTAGGCTAAAGTCCAGACCCGTGACAGT
1226230 TGGTATCAGAGCCAGTGTTTCGTGAAGGTAAT
66 TGGTATCAGAGCCAGTGTTTCGTGAAGGTAAT
* *
1226262 AAGGAAGTAATTTCCAAGCCTAAGGCCACGCGGTTTGCTAGGCTAAAGTCCAGGCTCGTGACAGT
1 AAGGAAGTAATTTCCAAGCCTAAGGCCACGCGGTTTGCTAGGCTAAAGTCCAGACCCGTGACAGT
1226327 TGGTATCAGAGCCAGTGTTTCGTGAAGGTA
66 TGGTATCAGAGCCAGTGTTTCGTGAAGGTA
1226357 TTGATCGTAG
Statistics
Matches: 89, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
97 89 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.26
Consensus pattern (97 bp):
AAGGAAGTAATTTCCAAGCCTAAGGCCACGCGGTTTGCTAGGCTAAAGTCCAGACCCGTGACAGT
TGGTATCAGAGCCAGTGTTTCGTGAAGGTAAT
Found at i:1226762 original size:278 final size:277
Alignment explanation
Indices: 1226265--1227100 Score: 1474
Period size: 278 Copynumber: 3.0 Consensus size: 277
1226255 AGGTAATAAG
* *
1226265 GAAGTAATTTCCAAGCCTAAGGCCACGCGGTTTGCTAGGCTAAAGTCCAGGCTCGTGACAGTTGG
1 GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCCAGGC-CGTGACAGTTGG
* * *
1226330 TATCAGAGCCAGTGTTTCGTGAAGGTATTGATCGTAGAAATAGCGTCTCAAGCAGAAAACTAGAC
65 TATCAGAGCCAGTGTTTCGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGAC
*
1226395 ACAAGAGGTCCCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATATTCTATCGG
130 ACAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATATTCTATCGG
*
1226460 CCATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGTGGGAAAACCTTGAGATA
195 CCATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGCGGGAAAACCTTGAGATA
1226525 GTGGAAAGCCGCATCGAA
260 GTGGAAAGCCGCATCGAA
1226543 GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCCAGGTCCGTGACAGTTGG
1 GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCCAGG-CCGTGACAGTTGG
* *
1226608 TATCAGAGCCAGTATTTTGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGAC
65 TATCAGAGCCAGTGTTTCGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGAC
*
1226673 ACAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAAAAGGCCAGCAGCTCGAGGGATATTCTATCGG
130 ACAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATATTCTATCGG
*
1226738 CCATGGATGACAAGGTCGCCAAACTCGAGGTGACCGTTGGAGATATGCGGGAAAACCTTGAGATA
195 CCATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGCGGGAAAACCTTGAGATA
*
1226803 GTGGAAAACCGCATCGAA
260 GTGGAAAGCCGCATCGAA
* *
1226821 GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCTAGGCCCGTGACATTTGG
1 GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCCAGG-CCGTGACAGTTGG
1226886 TATCAGAGCCAGTGTTTCGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGAC
65 TATCAGAGCCAGTGTTTCGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGAC
* *
1226951 ACAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATGTTCTATTGG
130 ACAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATATTCTATCGG
*
1227016 CCATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGCGGAAAAACCTTGAGATA
195 CCATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGCGGGAAAACCTTGAGATA
* *
1227081 GTGGGAAGCCGCATTGAA
260 GTGGAAAGCCGCATCGAA
1227099 GA
1 GA
1227101 GCTAGAGTCC
Statistics
Matches: 532, Mismatches: 25, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
278 531 1.00
279 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (277 bp):
GAAGTAATTTCCAAGCCTAAGACCGCGCGGTTTGCTAGGCTAAAGTCCAGGCCGTGACAGTTGGT
ATCAGAGCCAGTGTTTCGTGAAGGTACTGATCGTAGAAATAACGTCTCAAGCAGAAAACCAGACA
CAAGAGGTCTCGGAGACTCGTGGGAGAGGAAAGAAGGCCAGCAGCTCGAGGGATATTCTATCGGC
CATGGATGACAAGGTGGCCAAACTCGAGGTGACCGTTGGAGATATGCGGGAAAACCTTGAGATAG
TGGAAAGCCGCATCGAA
Found at i:1228628 original size:193 final size:193
Alignment explanation
Indices: 1228299--1228685 Score: 756
Period size: 193 Copynumber: 2.0 Consensus size: 193
1228289 TAGCAAAAGG
1228299 AGTGGAGATACAACTTGGAGATTGGAAAGGCAAGGAAACCATTGAAGTAATACCACTTGATGATT
1 AGTGGAGATACAACTTGGAGATTGGAAAGGCAAGGAAACCATTGAAGTAATACCACTTGATGATT
*
1228364 ATGACTGTGTGGTTGGCTTAAATTTCCTTGACCGAATTAATGCTCTCTTTGTACCATTTGCCGAT
66 ATGACTGTGTGGTTGGCTTAAATTTCCTTGACCGAATTAATGCTCTCCTTGTACCATTTGCCGAT
1228429 TGCATATGCATCTTGGATGCCCGCTATCAATGTATTATGTCGGTGAATCGAGAGATGGGTGTT
131 TGCATATGCATCTTGGATGCCCGCTATCAATGTATTATGTCGGTGAATCGAGAGATGGGTGTT
1228492 AGTGGAGATACAACTTGGAGATTGGAAAGGCAAGGAAACCATTGAAGTAATACCACTTGATGATT
1 AGTGGAGATACAACTTGGAGATTGGAAAGGCAAGGAAACCATTGAAGTAATACCACTTGATGATT
1228557 ATGACTGTGTGGTTGGCTTAAATTTCCTTGACCGAATTAATGCTCTCCTTGTACCATTTGCCGAT
66 ATGACTGTGTGGTTGGCTTAAATTTCCTTGACCGAATTAATGCTCTCCTTGTACCATTTGCCGAT
*
1228622 TGCATATGCATCTTGGATGCCCGCTATCAATGTATTGTGTCGGTGAATCGAGAGATGGGTGTT
131 TGCATATGCATCTTGGATGCCCGCTATCAATGTATTATGTCGGTGAATCGAGAGATGGGTGTT
1228685 A
1 A
1228686 AAGCCAAGGT
Statistics
Matches: 192, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
193 192 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (193 bp):
AGTGGAGATACAACTTGGAGATTGGAAAGGCAAGGAAACCATTGAAGTAATACCACTTGATGATT
ATGACTGTGTGGTTGGCTTAAATTTCCTTGACCGAATTAATGCTCTCCTTGTACCATTTGCCGAT
TGCATATGCATCTTGGATGCCCGCTATCAATGTATTATGTCGGTGAATCGAGAGATGGGTGTT
Found at i:1232363 original size:24 final size:23
Alignment explanation
Indices: 1232322--1232369 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
1232312 ACTATAAAAA
1232322 ATTTTAAAAATTAAATTTTAATTT
1 ATTTTAAAAATTAAATTTT-ATTT
* **
1232346 ATTTTGAAAATTTTATTTTATTT
1 ATTTTAAAAATTAAATTTTATTT
1232369 A
1 A
1232370 ATGAGATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (23 bp):
ATTTTAAAAATTAAATTTTATTT
Found at i:1234344 original size:10 final size:10
Alignment explanation
Indices: 1234331--1234378 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
1234321 ATTTGATTCA
1234331 ATTTAATTTT
1 ATTTAATTTT
1234341 ATTTAATTTT
1 ATTTAATTTT
1234351 ATTT-ATTTT
1 ATTTAATTTT
* *
1234360 AATCAA-TTT
1 ATTTAATTTT
1234369 -TTTAATTTT
1 ATTTAATTTT
1234378 A
1 A
1234379 AATTATCGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
8 3 0.10
9 13 0.42
10 15 0.48
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (10 bp):
ATTTAATTTT
Found at i:1235146 original size:1 final size:1
Alignment explanation
Indices: 1235140--1235168 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
1235130 TCTTTTGGCC
1235140 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1235169 CGGAAGGGTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:1235337 original size:17 final size:15
Alignment explanation
Indices: 1235306--1235407 Score: 55
Period size: 16 Copynumber: 6.1 Consensus size: 15
1235296 AGATTGATTT
1235306 ATTTAAATAAAATAA
1 ATTTAAATAAAATAA
1235321 ATTTAAATATTAAATAAATA
1 ATTTAAATA--AAAT--A-A
*
1235341 ATTTTAAAATCAAATAA
1 A-TTT-AAATAAAATAA
*
1235358 ATTTTAAATATAATAAAA
1 A-TTTAAATA-AA-ATAA
1235376 ATTT-AATAAAATATA
1 ATTTAAATAAAATA-A
*
1235391 TATTT-AATTAAATAA
1 -ATTTAAATAAAATAA
1235406 AT
1 AT
1235408 AGTTAAAAGT
Statistics
Matches: 71, Mismatches: 5, Indels: 23
0.72 0.05 0.23
Matches are distributed among these distances:
14 4 0.06
15 13 0.18
16 20 0.28
17 15 0.21
18 5 0.07
19 1 0.01
20 6 0.08
21 3 0.04
22 4 0.06
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (15 bp):
ATTTAAATAAAATAA
Found at i:1235355 original size:20 final size:21
Alignment explanation
Indices: 1235310--1235359 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
1235300 TGATTTATTT
*
1235310 AAATAAAATAAATTTAAATATT
1 AAAT-AAATAAATTTAAATATC
*
1235332 AAATAAATAATTTTAAA-ATC
1 AAATAAATAAATTTAAATATC
1235352 AAATAAAT
1 AAATAAAT
1235360 TTTAAATATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 10 0.38
21 12 0.46
22 4 0.15
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATAAATAAATTTAAATATC
Found at i:1235357 original size:16 final size:16
Alignment explanation
Indices: 1235313--1235374 Score: 58
Period size: 16 Copynumber: 3.8 Consensus size: 16
1235303 TTTATTTAAA
*
1235313 TAAAATAAATTTAAATAT
1 TAAAATAAA--TAAATTT
1235331 T-AAATAAAT-AATTT
1 TAAAATAAATAAATTT
1235345 TAAAATCAAATAAATTT
1 TAAAAT-AAATAAATTT
1235362 T-AAATATAATAAA
1 TAAAATA-AATAAA
1235375 AATTTAATAA
Statistics
Matches: 39, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
14 5 0.13
15 6 0.15
16 14 0.36
17 13 0.33
18 1 0.03
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TAAAATAAATAAATTT
Found at i:1235359 original size:37 final size:35
Alignment explanation
Indices: 1235310--1235388 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 35
1235300 TGATTTATTT
1235310 AAATAAAATAAA-TTTAAATATTAAATAAATAATTTTA
1 AAATAAAATAAATTTTAAATA-T-AATAAA-AATTTTA
*
1235347 AAATCAAATAAATTTTAAATATAATAAAAATTTAATA
1 AAATAAAATAAATTTTAAATATAATAAAAATTT--TA
1235384 AAATA
1 AAATA
1235389 TATATTTAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
35 5 0.14
36 6 0.16
37 18 0.49
38 8 0.22
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.35
Consensus pattern (35 bp):
AAATAAAATAAATTTTAAATATAATAAAAATTTTA
Found at i:1235943 original size:34 final size:33
Alignment explanation
Indices: 1235895--1236115 Score: 248
Period size: 34 Copynumber: 6.5 Consensus size: 33
1235885 TGGTAAAAAC
*
1235895 CACCATTTAATCAACAATGGCAACCTACCAAAT
1 CACCATTTAATCAACAATGGTAACCTACCAAAT
*
1235928 CTACCATTTAGTCAACAATGGTAAGCC-ACCAAAT
1 C-ACCATTTAATCAACAATGGTAA-CCTACCAAAT
* *
1235962 CACCCATTTAATCAATAATGGTAAGCTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
** * *
1235996 TTCTCATTTAATCAAAAATGGTAAGCTACCAAAT
1 CAC-CATTTAATCAACAATGGTAACCTACCAAAT
* * *
1236030 CTCCCATTTAGTCAACAATGGCAAACC-ACCAAAT
1 C-ACCATTTAATCAACAATGG-TAACCTACCAAAT
* *
1236064 CACCCATTTAATCAACAATGATAAACTACCAAAT
1 CA-CCATTTAATCAACAATGGTAACCTACCAAAT
1236098 CACCATTTAATCAACAAT
1 CACCATTTAATCAACAAT
1236116 TCTCCTACTT
Statistics
Matches: 160, Mismatches: 19, Indels: 18
0.81 0.10 0.09
Matches are distributed among these distances:
33 23 0.14
34 131 0.82
35 6 0.04
ACGTcount: A:0.42, C:0.26, G:0.07, T:0.25
Consensus pattern (33 bp):
CACCATTTAATCAACAATGGTAACCTACCAAAT
Found at i:1236016 original size:68 final size:67
Alignment explanation
Indices: 1235897--1236115 Score: 278
Period size: 68 Copynumber: 3.2 Consensus size: 67
1235887 GTAAAAACCA
* * *
1235897 CCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAAT-TACCATTTAATCAACAATGGTAAGCTACCAAAT
1235962 CAC
65 CAC
* * * * *
1235965 CCATTTAATCAATAATGGTAAGCTACCAAATTTCTCATTTAATCAAAAATGGTAAGCTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTAC-CATTTAATCAACAATGGTAAGCTACCAAAT
*
1236030 CTC
65 CAC
* * * * *
1236033 CCATTTAGTCAACAATGGCAAACCACCAAATCACCCATTTAATCAACAATGATAAACTACCAAAT
1 CCATTTAATCAACAATGGCAAACTACCAAATTA-CCATTTAATCAACAATGGTAAGCTACCAAAT
1236098 CA-
65 CAC
1236100 CCATTTAATCAACAAT
1 CCATTTAATCAACAAT
1236116 TCTCCTACTT
Statistics
Matches: 129, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
67 17 0.13
68 111 0.86
69 1 0.01
ACGTcount: A:0.42, C:0.26, G:0.07, T:0.25
Consensus pattern (67 bp):
CCATTTAATCAACAATGGCAAACTACCAAATTACCATTTAATCAACAATGGTAAGCTACCAAATC
AC
Found at i:1236039 original size:102 final size:101
Alignment explanation
Indices: 1235895--1236111 Score: 326
Period size: 102 Copynumber: 2.1 Consensus size: 101
1235885 TGGTAAAAAC
* * *
1235895 CACCATTTAATCAACAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGTAAGCCACCAA
1 CACCATTTAATCAAAAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
* * *
1235960 ATCACCCATTTAATCAATAATGGTAAGCTACCAAAT
66 ATCACCCATTTAATCAACAATGATAAACTACCAAAT
** * * *
1235996 TTCTCATTTAATCAAAAATGGTAAGCTACCAAATCTCCCATTTAGTCAACAATGGCAAACCACCA
1 CAC-CATTTAATCAAAAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCA
1236061 AATCACCCATTTAATCAACAATGATAAACTACCAAAT
65 AATCACCCATTTAATCAACAATGATAAACTACCAAAT
1236098 CACCATTTAATCAA
1 CACCATTTAATCAA
1236112 CAATTCTCCT
Statistics
Matches: 102, Mismatches: 13, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
101 12 0.12
102 90 0.88
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.25
Consensus pattern (101 bp):
CACCATTTAATCAAAAATGGCAACCTACCAAATCTACCATTTAGTCAACAATGGCAAACCACCAA
ATCACCCATTTAATCAACAATGATAAACTACCAAAT
Found at i:1238459 original size:3 final size:3
Alignment explanation
Indices: 1238451--1238485 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
1238441 AAATTTGTAC
*
1238451 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1238486 CACCCTTATA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:1241770 original size:2 final size:2
Alignment explanation
Indices: 1241763--1241790 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1241753 AGTTGCAATA
1241763 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1241791 TAGAGATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1243505 original size:14 final size:16
Alignment explanation
Indices: 1243484--1243527 Score: 58
Period size: 14 Copynumber: 2.9 Consensus size: 16
1243474 TAACGAAAAG
1243484 ATTA-TAAATATTAAA
1 ATTATTAAATATTAAA
*
1243499 A-T-TTAAATTTTAAA
1 ATTATTAAATATTAAA
1243513 ATTATTAAATATTAA
1 ATTATTAAATATTAA
1243528 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 12 0.50
15 2 0.08
16 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
ATTATTAAATATTAAA
Found at i:1243519 original size:23 final size:23
Alignment explanation
Indices: 1243492--1243536 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
1243482 AGATTATAAA
1243492 TATTAAA-ATTTAAATTTTAAAAT
1 TATTAAATA-TTAAATTTTAAAAT
*
1243515 TATTAAATATTAATTTTTAAAA
1 TATTAAATATTAAATTTTAAAA
1243537 ATAATTACAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 19 0.95
24 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (23 bp):
TATTAAATATTAAATTTTAAAAT
Found at i:1245630 original size:16 final size:16
Alignment explanation
Indices: 1245609--1245683 Score: 58
Period size: 16 Copynumber: 5.0 Consensus size: 16
1245599 GGTTGTTGTT
1245609 ATATAATATAAATATA
1 ATATAATATAAATATA
*
1245625 ATATAA-A-AAGATTAAA
1 ATATAATATAA-A-TATA
1245641 ATATAATAT-AATATA
1 ATATAATATAAATATA
1245656 A-A-AAT-T-AATAT-
1 ATATAATATAAATATA
1245667 ATATAATTATAAATATA
1 ATATAA-TATAAATATA
1245684 TAAAATTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 19
0.69 0.03 0.28
Matches are distributed among these distances:
11 1 0.02
12 7 0.15
13 5 0.11
14 4 0.09
15 7 0.15
16 21 0.45
17 2 0.04
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (16 bp):
ATATAATATAAATATA
Found at i:1245664 original size:17 final size:17
Alignment explanation
Indices: 1245638--1245688 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 17
1245628 TAAAAAGATT
1245638 AAAATATAATATAATATA
1 AAAATATAATAT-ATATA
1245656 AAAAT-TAATATATAT-
1 AAAATATAATATATATA
*
1245671 -AATTATAA-ATATATA
1 AAAATATAATATATATA
1245686 AAA
1 AAA
1245689 TTTTAAATAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
14 9 0.31
15 3 0.10
16 6 0.21
17 6 0.21
18 5 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (17 bp):
AAAATATAATATATATA
Found at i:1245670 original size:26 final size:25
Alignment explanation
Indices: 1245613--1245690 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 25
1245603 GTTGTTATAT
1245613 AATATA-AATATAATATAAAAAGATTA
1 AATATATAATATAATAT-AAAA-ATTA
1245639 AA-ATATAATATAATATAAAAATTA
1 AATATATAATATAATATAAAAATTA
1245663 ATATATATAATTATAAATATATAAAATT
1 A-ATATATAA-TAT-AATATA-AAAATT
1245691 TTAAATAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 9
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.11
25 8 0.17
26 18 0.39
27 3 0.07
28 6 0.13
29 6 0.13
ACGTcount: A:0.63, C:0.00, G:0.01, T:0.36
Consensus pattern (25 bp):
AATATATAATATAATATAAAAATTA
Found at i:1245684 original size:16 final size:16
Alignment explanation
Indices: 1245637--1245697 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
1245627 ATAAAAAGAT
1245637 TAAAA-TATAATATAATA
1 TAAAATTATAA-AT-ATA
*
1245654 TAAAA--ATTAATATA
1 TAAAATTATAAATATA
*
1245668 TATAATTATAAATATA
1 TAAAATTATAAATATA
*
1245684 TAAAATTTTAAATA
1 TAAAATTATAAATA
1245698 AAATGATGAT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
14 7 0.19
15 2 0.05
16 23 0.62
17 5 0.14
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
TAAAATTATAAATATA
Found at i:1247270 original size:2 final size:2
Alignment explanation
Indices: 1247263--1247290 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
1247253 TTTTAATTTG
1247263 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1247291 GATAATTATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1247398 original size:19 final size:18
Alignment explanation
Indices: 1247365--1247404 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
1247355 ATATAATTTT
*
1247365 AATATATAAAAATATATG
1 AATATATAAAAATATAAG
*
1247383 AATATAATACAAATATAAG
1 AATAT-ATAAAAATATAAG
1247402 AAT
1 AAT
1247405 TGTGATATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.62, C:0.03, G:0.05, T:0.30
Consensus pattern (18 bp):
AATATATAAAAATATAAG
Found at i:1249899 original size:23 final size:22
Alignment explanation
Indices: 1249873--1249927 Score: 76
Period size: 23 Copynumber: 2.4 Consensus size: 22
1249863 TACGTAATGC
1249873 ATTTAATA-AATTAGATATAATAT
1 ATTTAATATAATTA-ATA-AATAT
1249896 ATTTAAATATAATTAATAAATAT
1 ATTT-AATATAATTAATAAATAT
1249919 ATTTAATAT
1 ATTTAATAT
1249928 TTATATTATA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.17
23 13 0.43
24 7 0.23
25 5 0.17
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (22 bp):
ATTTAATATAATTAATAAATAT
Found at i:1250009 original size:13 final size:14
Alignment explanation
Indices: 1249987--1250024 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
1249977 ATGTTTATGA
1249987 AAATAAAAAT-TAT
1 AAATAAAAATATAT
1250000 AAATATAAATATATAT
1 AAATA-AAA-ATATAT
1250016 AAATAAAAA
1 AAATAAAAA
1250025 AATTTATTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.23
14 4 0.18
15 5 0.23
16 8 0.36
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (14 bp):
AAATAAAAATATAT
Found at i:1250408 original size:17 final size:18
Alignment explanation
Indices: 1250386--1250422 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
1250376 TGATGTTATA
1250386 TTATATTTTAATTAT-TT
1 TTATATTTTAATTATGTT
*
1250403 TTATATTTTATTTATGTT
1 TTATATTTTAATTATGTT
1250421 TT
1 TT
1250423 TCTAATATCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (18 bp):
TTATATTTTAATTATGTT
Found at i:1250531 original size:14 final size:12
Alignment explanation
Indices: 1250501--1250536 Score: 56
Period size: 12 Copynumber: 3.0 Consensus size: 12
1250491 TTCTTGCTGA
1250501 ATTATATTTTAT
1 ATTATATTTTAT
1250513 ATTATATTTT-T
1 ATTATATTTTAT
1250524 ATTATTATTTTAT
1 ATTA-TATTTTAT
1250537 TTGTATATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
11 5 0.23
12 16 0.73
13 1 0.05
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
ATTATATTTTAT
Found at i:1250848 original size:13 final size:13
Alignment explanation
Indices: 1250830--1250886 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
1250820 TGATTTTTAC
1250830 ATAATTTTATATT
1 ATAATTTTATATT
* *
1250843 ATAATTTAATATA
1 ATAATTTTATATT
1250856 ATAATTTATATATTT
1 ATAATTT-TATA-TT
*
1250871 ATAATATTTATTTT
1 ATAAT-TTTATATT
1250885 AT
1 AT
1250887 TAAATATTAT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
13 18 0.50
14 7 0.19
15 9 0.25
16 2 0.06
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATAATTTTATATT
Found at i:1250894 original size:16 final size:15
Alignment explanation
Indices: 1250873--1250917 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
1250863 ATATATTTAT
1250873 AATATTTATTTTATTA
1 AATA-TTATTTTATTA
*
1250889 AATATTATTATATTTA
1 AATATTATTTTA-TTA
*
1250905 AAAATTATTTTAT
1 AATATTATTTTAT
1250918 ATTTATAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
15 8 0.32
16 17 0.68
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (15 bp):
AATATTATTTTATTA
Found at i:1250980 original size:18 final size:18
Alignment explanation
Indices: 1250859--1250986 Score: 72
Period size: 18 Copynumber: 6.9 Consensus size: 18
1250849 TAATATAATA
*
1250859 ATTTATATA-TTTATAAT
1 ATTTATATATTTTAAAAT
1250876 ATTTAT-T-TTATT-AAAT
1 ATTTATATATT-TTAAAAT
*
1250892 A-TTATTATATTTAAAAATT
1 ATTTA-TATATTTTAAAA-T
1250911 ATTT-TATATTTATAAAAT
1 ATTTATATATTT-TAAAAT
* *
1250929 TTTTA-ATATATTAATAATTT
1 ATTTATATATTTTAA-AA--T
*
1250949 ATATGATATAATTTTAAAAT
1 AT-TTATAT-ATTTTAAAAT
1250969 ATTTATATATTTGTAAAA
1 ATTTATATATTT-TAAAA
1250987 ATCCACACGT
Statistics
Matches: 85, Mismatches: 9, Indels: 32
0.67 0.07 0.25
Matches are distributed among these distances:
15 3 0.04
16 7 0.08
17 13 0.15
18 27 0.32
19 16 0.19
20 7 0.08
21 2 0.02
22 4 0.05
23 6 0.07
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (18 bp):
ATTTATATATTTTAAAAT
Found at i:1251649 original size:34 final size:34
Alignment explanation
Indices: 1251595--1251777 Score: 233
Period size: 34 Copynumber: 5.4 Consensus size: 34
1251585 GCTTATTGGG
* * **
1251595 TGTTGATTAAAT-GGTGATTTGGTAGTTTATTAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* *
1251628 TGTTGACTAAATGGGAAATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
1251662 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * * *
1251696 TATTGATTAAATGGGTGATTTGGTGGTTTACCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
* * **
1251730 TGTTGACTAAATGGGAGATTTGGTAGGTTGTCAT
1 TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
1251764 TGTTGATTAAATGG
1 TGTTGATTAAATGG
1251778 TGGTTTTTAC
Statistics
Matches: 129, Mismatches: 20, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
33 11 0.09
34 118 0.91
ACGTcount: A:0.26, C:0.06, G:0.27, T:0.42
Consensus pattern (34 bp):
TGTTGATTAAATGGGAGATTTGGTAGCTTACCAT
Found at i:1252138 original size:19 final size:19
Alignment explanation
Indices: 1252082--1252144 Score: 90
Period size: 19 Copynumber: 3.3 Consensus size: 19
1252072 TGGTTGTCGA
**
1252082 GGTACTATTCACGTATATA
1 GGTACTATTCACGTATACG
1252101 GGTACTATTCACGTATACG
1 GGTACTATTCACGTATACG
*
1252120 GGTACTATTCAAGTATACG
1 GGTACTATTCACGTATACG
*
1252139 GTTACT
1 GGTACT
1252145 GTACACGTGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 40 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (19 bp):
GGTACTATTCACGTATACG
Found at i:1256276 original size:34 final size:34
Alignment explanation
Indices: 1256210--1256394 Score: 255
Period size: 34 Copynumber: 5.5 Consensus size: 34
1256200 AAGTGGGAGA
* *
1256210 ATTGTTGATTAAAT-GGTGATTTGGTAGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* *
1256243 ATTGTTGACTAAATGGGAAATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
1256277 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * * *
1256311 ATTATTGATTAAATGGGTGATTTGGTGGTTTACC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
* * **
1256345 ATTGTTGACTAAATGGGAGATTTGGTAGGTTGTC
1 ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
1256379 ATTGTTGATTAAATGG
1 ATTGTTGATTAAATGG
1256395 TGGTTTTTAC
Statistics
Matches: 133, Mismatches: 18, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
33 13 0.10
34 120 0.90
ACGTcount: A:0.26, C:0.07, G:0.26, T:0.41
Consensus pattern (34 bp):
ATTGTTGATTAAATGGGAGATTTGGTAGCTTACC
Found at i:1257057 original size:15 final size:15
Alignment explanation
Indices: 1257023--1257064 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
1257013 TTATTAAAAA
*
1257023 ATTATATTTTATA-T
1 ATTATATTTAATATT
1257037 -TTATATTTAATATT
1 ATTATATTTAATATT
*
1257051 ATTATATTAAATAT
1 ATTATATTTAATAT
1257065 AAATATTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 11 0.46
14 1 0.04
15 12 0.50
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (15 bp):
ATTATATTTAATATT
Found at i:1257787 original size:29 final size:30
Alignment explanation
Indices: 1257731--1257797 Score: 95
Period size: 29 Copynumber: 2.3 Consensus size: 30
1257721 TTTATTATAA
*
1257731 ATATATTT--AATTATTTTTAAAAATTTAT
1 ATATATTTAAAATTATTTTTAAAAAGTTAT
1257759 ATATATTTAAAATT-TTTTTAAAAAGTTAT
1 ATATATTTAAAATTATTTTTAAAAAGTTAT
*
1257788 ATATTTTTAA
1 ATATATTTAA
1257798 CCGAAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
28 8 0.23
29 23 0.66
30 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (30 bp):
ATATATTTAAAATTATTTTTAAAAAGTTAT
Done.