Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold432
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1706767
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.28
Warning! 187295 characters in sequence are not A, C, G, or T
File 5 of 8
Found at i:777668 original size:13 final size:13
Alignment explanation
Indices: 777650--777702 Score: 63
Period size: 13 Copynumber: 4.1 Consensus size: 13
777640 TAAAAACCCA
777650 AATGTATCGATAC
1 AATGTATCGATAC
*
777663 AATGTATTGAT-C
1 AATGTATCGATAC
*
777675 AGATGTATCGATAT
1 A-ATGTATCGATAC
*
777689 AATATATCGATAC
1 AATGTATCGATAC
777702 A
1 A
777703 TGGGTTACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
12 2 0.06
13 30 0.91
14 1 0.03
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:780236 original size:13 final size:13
Alignment explanation
Indices: 780218--780242 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
780208 ACGTCATGCT
780218 TTGTATCGATACA
1 TTGTATCGATACA
780231 TTGTATCGATAC
1 TTGTATCGATAC
780243 CTGTTCATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:786105 original size:14 final size:14
Alignment explanation
Indices: 786086--786127 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
786076 ATTAGACTTC
786086 ACATCATGCATTCA
1 ACATCATGCATTCA
*
786100 ACATCATGCATTCC
1 ACATCATGCATTCA
*
786114 ACATCACGCATTCA
1 ACATCATGCATTCA
786128 CATTACCATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.33, C:0.33, G:0.07, T:0.26
Consensus pattern (14 bp):
ACATCATGCATTCA
Found at i:786750 original size:57 final size:57
Alignment explanation
Indices: 786662--786808 Score: 170
Period size: 57 Copynumber: 2.6 Consensus size: 57
786652 AAAGCCCACG
* *
786662 CAAGTTAA-GGCACCCTTTTAAAATCCACAAGTCGGTGGCAACATTTTCAAAGCCCA
1 CAAGTTAATGGCAACCTTTTAAAATCCACAAGTCGGTGGCAACATTTTCAAAGACCA
* * * * * *
786718 TATGTTAATGGCAACCTTTTAAAGTCCCCAAGTTGGTGGCAACCTTTTCAAAGACCA
1 CAAGTTAATGGCAACCTTTTAAAATCCACAAGTCGGTGGCAACATTTTCAAAGACCA
* * * * *
786775 CAAGTCAGTGGCATCCTTTTAAAACCCAGAAGTC
1 CAAGTTAATGGCAACCTTTTAAAATCCACAAGTC
786809 AATGGCAGCC
Statistics
Matches: 72, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
56 6 0.08
57 66 0.92
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (57 bp):
CAAGTTAATGGCAACCTTTTAAAATCCACAAGTCGGTGGCAACATTTTCAAAGACCA
Found at i:786758 original size:28 final size:28
Alignment explanation
Indices: 786670--786815 Score: 112
Period size: 28 Copynumber: 5.1 Consensus size: 28
786660 CGCAAGTTAA
* * *
786670 GGCACCCTTTTAAAATCCACAAGTCGGT
1 GGCAACCTTTTAAAGTCCACAAGTCAGT
* * * * * *
786698 GGCAACATTTTCAAAGCCCATATGTTAAT
1 GGCAACCTTTT-AAAGTCCACAAGTCAGT
* **
786727 GGCAACCTTTTAAAGTCCCCAAGTTGGT
1 GGCAACCTTTTAAAGTCCACAAGTCAGT
*
786755 GGCAACCTTTTCAAAGACCACAAGTCAGT
1 GGCAACCTTTT-AAAGTCCACAAGTCAGT
* ** * *
786784 GGCATCCTTTTAAAACCCAGAAGTCAAT
1 GGCAACCTTTTAAAGTCCACAAGTCAGT
786812 GGCA
1 GGCA
786816 GCCCTCTCAA
Statistics
Matches: 91, Mismatches: 25, Indels: 4
0.76 0.21 0.03
Matches are distributed among these distances:
28 48 0.53
29 43 0.47
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (28 bp):
GGCAACCTTTTAAAGTCCACAAGTCAGT
Found at i:786972 original size:52 final size:53
Alignment explanation
Indices: 786915--787363 Score: 355
Period size: 52 Copynumber: 8.7 Consensus size: 53
786905 TGTCTTTTTC
* *
786915 TAAGTCTAATGTCACTGGCCTTGAATCAGCACATTGGCATTCTTCT-T-ATCTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCTATCATCTT
* * * * *
786967 TAAGTCCAATGTCGTTGGCCTTGAATTAGCATATTGGCACCTT-TGTCATCTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* * * * * *
787019 TAAGTCTGATATTGTTGGCCTTGAATTAGCACATTGGCACCCT-TATCATCTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* ** * * * *
787071 TAAGTCCAATGTTACTGGCCTTGAATTAGCATATTGGCACCTT-TGTCATTTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* * * * ** * *
787123 TAA--ATGATATCGCTGGCCTTAAATCAATATATTGGCA-CTTCTATCATTTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* * * * * ** *
787173 TAAGCCCAATGTTGCTGGCCTTGAATCAGTATATTGAAACCCT-TATCATCTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* * * * *
787225 AAAGTCTAATGTCGTTGGCCTTGAATCAGTACTTTGGCACCTT-TATCATGTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
* * * * * *
787277 TAAGTCTAATGTCGTTAGTCTTGAATCAGCACATTAGCA--TTCCTCTCATTTT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT-CTATCATCTT
* *
787329 TAAGTCTAATGTTGCTGGCCTTGAATCAGCTCATT
1 TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATT
787364 AGCATTCTTC
Statistics
Matches: 321, Mismatches: 68, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
49 3 0.01
50 38 0.12
51 4 0.01
52 274 0.85
53 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (53 bp):
TAAGTCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTT
Found at i:787043 original size:104 final size:105
Alignment explanation
Indices: 786915--787363 Score: 403
Period size: 104 Copynumber: 4.3 Consensus size: 105
786905 TGTCTTTTTC
* * *
786915 TAAGTCTAATGTCACTGGCCTTGAATCAGCACATTGGCATTCTTCT-T-ATCTTTAAGTCCAATG
1 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCA-CCTTCTATCATCTTTAAGTCCAATG
* *
786978 TCGTTGGCCTTGAATTAGCATATTGGCACCTTTGTCATCTT
65 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
* * * * *
787019 TAAGTCTGATATTGTTGGCCTTGAATTAGCACATTGGCACCCT-TATCATCTTTAAGTCCAATGT
1 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTTTAAGTCCAATGT
** * *
787083 TACTGGCCTTGAATTAGCATATTGGCACCTTTGTCATTTT
66 CGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
* * * ** * * *
787123 TAA--ATGATATCGCTGGCCTTAAATCAATATATTGGCA-CTTCTATCATTTTTAAGCCCAATGT
1 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTTTAAGTCCAATGT
* * ** * *
787185 TGCTGGCCTTGAATCAGTATATTGAAACCCTTATCATCTT
66 CGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
* * * * * * *
787225 AAAGTCTAATGTCGTTGGCCTTGAATCAGTACTTTGGCACCTT-TATCATGTTTAAGTCTAATGT
1 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTTTAAGTCCAATGT
* * * * * * *
787289 CGTTAGTCTTGAATCAGCACATTAGCA--TTCCTCTCATTTT
66 CGCTGGCCTTGAATCAGCATATTGGCACCTT--TGTCATCTT
* * *
787329 TAAGTCTAATGTTGCTGGCCTTGAATCAGCTCATT
1 TAAGTCTAATATCGCTGGCCTTGAATCAGCACATT
787364 AGCATTCTTC
Statistics
Matches: 276, Mismatches: 61, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
101 2 0.01
102 81 0.29
103 3 0.01
104 187 0.68
105 3 0.01
ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39
Consensus pattern (105 bp):
TAAGTCTAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCTATCATCTTTAAGTCCAATGT
CGCTGGCCTTGAATCAGCATATTGGCACCTTTGTCATCTT
Found at i:790820 original size:80 final size:79
Alignment explanation
Indices: 790618--790841 Score: 218
Period size: 80 Copynumber: 2.8 Consensus size: 79
790608 GTGAAAATCG
* * * **
790618 AGGTTGGAGTACCCCTGAGATAAAAAATTTAAT-GTTTTGGAAGCAAAAACGAGGTTGGAGTATC
1 AGGTTGGAGTATCCCTAAGATAAAAAATTTAATAG-TTTGAAAATAAAAACGAGGTTGGAGTATC
* * * *
790682 CCTTTGGAAGTGATG
65 CCCTTGGAAATAATA
* * * * * * * * * *
790697 CGGGTGGAGTATCCTTGATGGTGAAAAA-TTGATATTTTAAAAATAATAACGAGGGTTGGAGTAT
1 AGGTTGGAGTATCCCT-AAGATAAAAAATTTAATAGTTTGAAAATAAAAACGA-GGTTGGAGTAT
790761 CCCCTTGGAAATAATA
64 CCCCTTGGAAATAATA
* *
790777 AGGTTAGAGTATCCCTAAGATAAAAAATTTAATAGTTTGAAAATAAAAATGAGGTTGGAGTATCC
1 AGGTTGGAGTATCCCTAAGATAAAAAATTTAATAGTTTGAAAATAAAAACGAGGTTGGAGTATCC
790842 TCGAGATAAA
Statistics
Matches: 110, Mismatches: 31, Indels: 8
0.74 0.21 0.05
Matches are distributed among these distances:
79 49 0.45
80 61 0.55
ACGTcount: A:0.37, C:0.10, G:0.25, T:0.29
Consensus pattern (79 bp):
AGGTTGGAGTATCCCTAAGATAAAAAATTTAATAGTTTGAAAATAAAAACGAGGTTGGAGTATCC
CCTTGGAAATAATA
Found at i:790849 original size:51 final size:51
Alignment explanation
Indices: 790777--790893 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 51
790767 GGAAATAATA
*
790777 AGGTTAGAGTATCCCTAAGATAAAAAATTTAATA-GTTTGAAAATAAAAATG
1 AGGTTGGAGTATCCCTAAGATAAAAAATTTAATATGTTTG-AAATAAAAATG
* *
790828 AGGTTGGAGTAT-CCTCGAGATAAAAAATTTAATATTTTTGAAATAAAAATG
1 AGGTTGGAGTATCCCT-AAGATAAAAAATTTAATATGTTTGAAATAAAAATG
* *
790879 GGGCTGGAGTATCCC
1 AGGTTGGAGTATCCC
790894 CTCAAAATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
50 3 0.05
51 49 0.84
52 6 0.10
ACGTcount: A:0.42, C:0.09, G:0.20, T:0.30
Consensus pattern (51 bp):
AGGTTGGAGTATCCCTAAGATAAAAAATTTAATATGTTTGAAATAAAAATG
Found at i:790917 original size:79 final size:78
Alignment explanation
Indices: 790829--791012 Score: 271
Period size: 79 Copynumber: 2.3 Consensus size: 78
790819 ATAAAAATGA
* * * * *
790829 GGTTGGAGTATCCTCGAGATAAAAAATTTAATATTTTTGAAATAAAAATGGGGCTGGAGTATCCC
1 GGTTAGAGTATCCCCAAGATGAAAAATTTAATATTTTTGAAATAAAAACGGGGCTGGAGTAT-CC
* *
790894 CTC-AAAATTGATGG
65 CTCGAAAA-TAATAG
*
790908 GGTTAGAGTATCCCCAAGATGAAAAATTTAATATTTTTGAAATAAAAACGGGGTTGGAGTATCCC
1 GGTTAGAGTATCCCCAAGATGAAAAATTTAATATTTTTGAAATAAAAACGGGGCTGGAGTATCCC
790973 TCGAAAATAATAG
66 TCGAAAATAATAG
790986 GGTTAGAGTATCCCCAAGATGAAAAAT
1 GGTTAGAGTATCCCCAAGATGAAAAAT
791013 CGATATTTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
78 36 0.38
79 60 0.62
ACGTcount: A:0.38, C:0.12, G:0.22, T:0.28
Consensus pattern (78 bp):
GGTTAGAGTATCCCCAAGATGAAAAATTTAATATTTTTGAAATAAAAACGGGGCTGGAGTATCCC
TCGAAAATAATAG
Found at i:793490 original size:20 final size:21
Alignment explanation
Indices: 793465--793517 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 21
793455 CATTTTAGGC
793465 ATGTATCGATACATTCACT-T
1 ATGTATCGATACATTCACTGT
* *
793485 ATGTATTGATACATTTACTGT
1 ATGTATCGATACATTCACTGT
*
793506 TTGTATCGATAC
1 ATGTATCGATAC
793518 GAATTATAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.43
Consensus pattern (21 bp):
ATGTATCGATACATTCACTGT
Found at i:793516 original size:21 final size:21
Alignment explanation
Indices: 793445--793517 Score: 78
Period size: 21 Copynumber: 3.5 Consensus size: 21
793435 AGGGTAGTTT
* *
793445 TGTATCGATACATTTTA-GGCA
1 TGTATCGATACA-TTTACTGTA
*
793466 TGTATCGATACATTCACT-TA
1 TGTATCGATACATTTACTGTA
* *
793486 TGTATTGATACATTTACTGTT
1 TGTATCGATACATTTACTGTA
793507 TGTATCGATAC
1 TGTATCGATAC
793518 GAATTATAGA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
20 20 0.47
21 23 0.53
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATTTACTGTA
Found at i:794952 original size:51 final size:52
Alignment explanation
Indices: 794884--794991 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 52
794874 AGATGTATTG
* ** *
794884 ATACATTGAAGAATGTATTGATAAATTTGGGTC-AAAACCCATAATGTATCA
1 ATACAATGAAGAATGTATCAATAAATTTGGGTCAAAAACCCAGAATGTATCA
* * * *
794935 ATACAATGAATAATGTATCAATACATTTGGGTCAAAAACCTAGAATGTATCG
1 ATACAATGAAGAATGTATCAATAAATTTGGGTCAAAAACCCAGAATGTATCA
794987 ATACA
1 ATACA
794992 TTTGGGTCAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
51 28 0.58
52 20 0.42
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (52 bp):
ATACAATGAAGAATGTATCAATAAATTTGGGTCAAAAACCCAGAATGTATCA
Found at i:794991 original size:32 final size:32
Alignment explanation
Indices: 794946--795026 Score: 128
Period size: 32 Copynumber: 2.5 Consensus size: 32
794936 TACAATGAAT
*
794946 AATGTATCAATACATTTGGGTCAAAAAC-CTAG
1 AATGTATCGATACATTTGGGTCAAAAACAC-AG
794978 AATGTATCGATACATTTGGGTCAAAAACACAG
1 AATGTATCGATACATTTGGGTCAAAAACACAG
*
795010 AATATATCGATACATTT
1 AATGTATCGATACATTT
795027 TCTTTCCAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
32 45 0.98
33 1 0.02
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (32 bp):
AATGTATCGATACATTTGGGTCAAAAACACAG
Found at i:795134 original size:15 final size:13
Alignment explanation
Indices: 795103--795127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
795093 ATGTTATTTA
795103 TGTATCGATACAT
1 TGTATCGATACAT
795116 TGTATCGATACA
1 TGTATCGATACA
795128 AATTGTAGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:796621 original size:157 final size:152
Alignment explanation
Indices: 796076--796621 Score: 461
Period size: 157 Copynumber: 3.5 Consensus size: 152
796066 TCTCAGTTGT
* * * * * *
796076 CCTAATAGACTTTAAAATGATCGTAAATGGGGTGAACCTATCCTAAATACACATC-TTTGGCATA
1 CCTAAAAGAC-TTAAAAAGATCATAAATAGAG-GAACCTATCCTAAATACCCA-CATTTGGCATA
* ** * * ** *
796140 AAAGCATCTCGATGACAATCT-AGAACTTGGGTCTAGAAAAATTATGAAAATGCCCCCATGGATA
63 AAAGCATCCCGATGACAATCTAAG-AC-TGATTCTAGAAAAATTACGAAAATACCCTTATAGATA
* * *
796204 TACCTTCAACATGAAAATATCCTGGTAA
126 TACCTTCAA-ATGAAAGTATCCCGATAA
* * * * * * *
796232 GCCCAAATGACTTAAAAAAGATCATAAATAGGATGAAACTATCCTAAATACTCACCTTTGACATA
1 -CCTAAAAGACTT-AAAAAGATCATAAATA-GAGGAACCTATCCTAAATACCCACATTTGGCATA
* * * * * * *
796297 AAAGCATCTCC-ATGACGACCTAGGACTAAGTTCTA-AACAATTACAAAAATACCCTTATAGGTA
63 AAAGCATC-CCGATGACAATCTAAGACTGA-TTCTAGAAAAATTACGAAAATACCCTTATAGATA
* * * *
796360 TACTTTCCAGATGAAAGTATCTCGACAA
126 TACCTT-CAAATGAAAGTATCCCGATAA
** * * * *
796388 CCCTAAAAGACTTAGAAAAGATCATAAATAGAATAAACCTATCTTAAATACCTATATTTTGCATA
1 -CCTAAAAGACTTA-AAAAGATCATAAATAG-AGGAACCTATCCTAAATACCCACATTTGGCATA
* * * *
796453 AAAGCATCCCGATGATAATCTAAGACTCGATTCTAGAATAATTACGCAAATACCCTTATAGTTAT
63 AAAGCATCCCGATGACAATCTAAGACT-GATTCTAGAAAAATTACGAAAATACCCTTATAGATAT
796518 ACCTTCGAAATGAAAGTATCCCGATAA
127 ACCTTC-AAATGAAAGTATCCCGATAA
* *
796545 CTCTAAAGGACTTAAAAAGGATCATAAATGAGAGGAACCTATCCCAAATACCCACATTTGGCATA
1 C-CTAAAAGACTTAAAAA-GATCATAAAT-AGAGGAACCTATCCTAAATACCCACATTTGGCATA
796610 AAAGCATCCCGA
63 AAAGCATCCCGA
796622 CAACAAATTA
Statistics
Matches: 307, Mismatches: 66, Indels: 32
0.76 0.16 0.08
Matches are distributed among these distances:
155 4 0.01
156 122 0.40
157 176 0.57
158 5 0.02
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (152 bp):
CCTAAAAGACTTAAAAAGATCATAAATAGAGGAACCTATCCTAAATACCCACATTTGGCATAAAA
GCATCCCGATGACAATCTAAGACTGATTCTAGAAAAATTACGAAAATACCCTTATAGATATACCT
TCAAATGAAAGTATCCCGATAA
Found at i:796665 original size:157 final size:153
Alignment explanation
Indices: 796076--796711 Score: 460
Period size: 157 Copynumber: 4.1 Consensus size: 153
796066 TCTCAGTTGT
* * * * * *
796076 CCTAATAGACTTTAAAATGATCGTAAATGGGGTGAACCTATCCTAAATACACATC-TTTGGCATA
1 CCTAAAAGAC-TTAAAAAGATCATAAATAGAG-GAACCTATCCTAAATACCCA-CATTTGGCATA
* * *** * * ** *
796140 AAAGCATCTCGATGACAATCTAGAACTTGGGTCTAGAA-AAATTATGAAAATGCCCCCATGGATA
63 AAAGCATCCCGATGACAATCTAGGACTTAATTCTAGAACAAA-TACGAAAATACCCTTATAGATA
* * *
796204 TACCTTCAACATGAAAATATCCTGGTAA
127 TACCTTCAA-ATGAAAGTATCCCGATAA
* * * * * * *
796232 GCCCAAATGACTTAAAAAAGATCATAAATAGGATGAAACTATCCTAAATACTCACCTTTGACATA
1 -CCTAAAAGACTT-AAAAAGATCATAAATA-GAGGAACCTATCCTAAATACCCACATTTGGCATA
* * * * *
796297 AAAGCATCTCC-ATGACGACCTAGGAC-TAAGTTCTA-AACAATTACAAAAATACCCTTATAGGT
63 AAAGCATC-CCGATGACAATCTAGGACTTAA-TTCTAGAACAAATACGAAAATACCCTTATAGAT
* * * *
796359 ATACTTTCCAGATGAAAGTATCTCGACAA
126 ATACCTT-CAAATGAAAGTATCCCGATAA
** * * * *
796388 CCCTAAAAGACTTAGAAAAGATCATAAATAGAATAAACCTATCTTAAATACCTATATTTTGCATA
1 -CCTAAAAGACTTA-AAAAGATCATAAATAG-AGGAACCTATCCTAAATACCCACATTTGGCATA
* * ** * * * *
796453 AAAGCATCCCGATGATAATCTAAGACTCGATTCTAGAATAATTACGCAAATACCCTTATAGTTAT
63 AAAGCATCCCGATGACAATCTAGGACTTAATTCTAGAACAAATACGAAAATACCCTTATAGATAT
796518 ACCTTCGAAATGAAAGTATCCCGATAA
128 ACCTTC-AAATGAAAGTATCCCGATAA
* *
796545 CTCTAAAGGACTTAAAAAGGATCATAAATGAGAGGAACCTATCCCAAATACCCACATTTGGCATA
1 C-CTAAAAGACTTAAAAA-GATCATAAAT-AGAGGAACCTATCCTAAATACCCACATTTGGCATA
** * * * *
796610 AAAGCATCCCGACAACAAAT-TAGGACTTAATCCTAGAA-AAATATGAAAATAACCC-TATGGGT
63 AAAGCATCCCGATGAC-AATCTAGGACTTAATTCTAGAACAAATACGAAAAT-ACCCTTATAGAT
* ** *
796672 ACATATTTAACATGAAAGTATCCCGATAA
126 ATACCTTCAA-ATGAAAGTATCCCGATAA
*
796701 TCTTAAAAGAC
1 -CCTAAAAGAC
796712 ACAAAAATAT
Statistics
Matches: 374, Mismatches: 85, Indels: 41
0.75 0.17 0.08
Matches are distributed among these distances:
155 6 0.02
156 161 0.43
157 200 0.53
158 7 0.02
ACGTcount: A:0.41, C:0.20, G:0.13, T:0.26
Consensus pattern (153 bp):
CCTAAAAGACTTAAAAAGATCATAAATAGAGGAACCTATCCTAAATACCCACATTTGGCATAAAA
GCATCCCGATGACAATCTAGGACTTAATTCTAGAACAAATACGAAAATACCCTTATAGATATACC
TTCAAATGAAAGTATCCCGATAA
Found at i:797423 original size:165 final size:162
Alignment explanation
Indices: 797119--797596 Score: 527
Period size: 165 Copynumber: 2.9 Consensus size: 162
797109 ATTATTCATA
* * * * * ** *
797119 AAACTTTCTGAATTTACAAATTGGTCATTACATAATTAAAACACAAAGTTAAGCATCAAATATAT
1 AAACTTTCTAAAATTACAAATTGGTCCTTATATAATTAAAACACAAAATTAAATATCAAACATAT
* * * * * * * * *
797184 TAAAATTAACAGCAAAGTTCACATACAAAAGTCACAAGAAAGATTAGGCCAAGTAAC-TTTGGCA
66 CAAAATCAACA-CAAA-AT--GATCCAAAAATTACAAGAAAGATTTGGCCAAGT-ACTTTTGGCC
797248 TTCG-AACAAAATTTTTAATATTTACACTT-AAATCCCT
126 TT-GAAACAAAATTTTTAATATTTACACTTAAAAT-CCT
* * * *** *
797285 AAGCTTTGTGAAATTACAAATTGGT-CTCTATATAATTAAAATGTAAAATTAAATATCAAAGATA
1 AAACTTTCTAAAATTACAAATTGGTCCT-TATATAATTAAAACACAAAATTAAATATCAAACATA
* *
797349 TCGAAATCCACACAAAAATTAGATCCAAAAATTACAAGAAA-ATTTTGGCCAAGTACTTTTGGCC
65 TCAAAATCAACAC-AAAA-T-GATCCAAAAATTACAAGAAAGA-TTTGGCCAAGTACTTTTGGCC
* *
797413 TTGAAACAAAATTTTTAATATTTATACTTAAAATTCT
126 TTGAAACAAAATTTTTAATATTTACACTTAAAATCCT
* *
797450 AAACTTTCTAAAATTACAAATTGGTCCTTATATATTTAAAACACAAAATTAAATATCGAACATAT
1 AAACTTTCTAAAATTACAAATTGGTCCTTATATAATTAAAACACAAAATTAAATATCAAACATAT
*
797515 CAAAATCAACTCAAAATGATCCAAAAATTACAAGAAAGATTTGG-CAAGTACTTTTGGCCTTGAA
66 CAAAATCAACACAAAATGATCCAAAAATTACAAGAAAGATTTGGCCAAGTACTTTTGGCCTTGAA
797579 ACAAAATTTTTAATATTT
131 ACAAAATTTTTAATATTT
797597 TTAAATTTAC
Statistics
Matches: 266, Mismatches: 37, Indels: 23
0.82 0.11 0.07
Matches are distributed among these distances:
161 38 0.14
162 25 0.09
163 2 0.01
164 8 0.03
165 125 0.47
166 68 0.26
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (162 bp):
AAACTTTCTAAAATTACAAATTGGTCCTTATATAATTAAAACACAAAATTAAATATCAAACATAT
CAAAATCAACACAAAATGATCCAAAAATTACAAGAAAGATTTGGCCAAGTACTTTTGGCCTTGAA
ACAAAATTTTTAATATTTACACTTAAAATCCT
Found at i:799478 original size:20 final size:20
Alignment explanation
Indices: 799455--799527 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
799445 ACAATTCAAA
799455 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
799475 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
799496 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
799516 GTATCGATACAT
1 GTATCGATACAT
799528 AAAAAGGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:799499 original size:21 final size:21
Alignment explanation
Indices: 799473--799548 Score: 84
Period size: 21 Copynumber: 3.7 Consensus size: 21
799463 ACATGTTGCA
799473 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
799494 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
799514 ATGTATCGATACAT-AAAAAGG
1 ATGTATCGATACATGAAAAA-G
*
799535 TTGTATCGATACAT
1 ATGTATCGATACAT
799549 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
19 1 0.02
20 14 0.32
21 29 0.66
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:799506 original size:41 final size:41
Alignment explanation
Indices: 799455--799548 Score: 163
Period size: 41 Copynumber: 2.3 Consensus size: 41
799445 ACAATTCAAA
799455 GTATCGATACATGTTGCAATGTATCGATACATGAAAAA-GAT
1 GTATCGATACATGTTGCAATGTATCGATACAT-AAAAAGGAT
*
799496 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
799537 GTATCGATACAT
1 GTATCGATACAT
799549 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
40 5 0.10
41 46 0.90
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAGGAT
Found at i:799605 original size:13 final size:13
Alignment explanation
Indices: 799587--799612 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
799577 TACAGCAAGT
799587 ATGTATCGATACA
1 ATGTATCGATACA
799600 ATGTATCGATACA
1 ATGTATCGATACA
799613 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:803413 original size:15 final size:15
Alignment explanation
Indices: 803393--803423 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
803383 TAAAAATGTC
*
803393 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
803408 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
803423 C
1 C
803424 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:805515 original size:20 final size:21
Alignment explanation
Indices: 805436--805514 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
805426 AATGTCCAAA
*
805436 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
805456 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
805481 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
805501 TTGTATCGATACAT
1 ATGTATCGATACAT
805515 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:805519 original size:13 final size:13
Alignment explanation
Indices: 805501--805539 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
805491 ACATTTTTCT
805501 TTGTATCGATACA
1 TTGTATCGATACA
805514 TTGTATCGATACA
1 TTGTATCGATACA
*
805527 CTGTATCGATACA
1 TTGTATCGATACA
805540 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:808005 original size:20 final size:20
Alignment explanation
Indices: 807982--808054 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
807972 ACAATTCAAA
807982 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
808002 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
808023 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
808043 GTATCGATACAT
1 GTATCGATACAT
808055 AAAAAAGTTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:808026 original size:21 final size:21
Alignment explanation
Indices: 808000--808075 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
807990 ACATGTTGCA
808000 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
808021 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
808041 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
*
808062 TTGTATCGATACAT
1 ATGTATCGATACAT
808076 TTCTTGGCAG
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.41, C:0.12, G:0.17, T:0.30
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:808033 original size:41 final size:41
Alignment explanation
Indices: 807982--808075 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
807972 ACAATTCAAA
*
807982 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
*
808023 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGTT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
808064 GTATCGATACAT
1 GTATCGATACAT
808076 TTCTTGGCAG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:808132 original size:13 final size:13
Alignment explanation
Indices: 808114--808139 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
808104 TACAGCAAGT
808114 ATGTATCGATACA
1 ATGTATCGATACA
808127 ATGTATCGATACA
1 ATGTATCGATACA
808140 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:809310 original size:154 final size:153
Alignment explanation
Indices: 809133--809576 Score: 450
Period size: 155 Copynumber: 2.9 Consensus size: 153
809123 ATTACATGAA
* * *
809133 AAAAATGC-AAAAGTCATAAAATAAATTGAA-TTTCCACAAATTGATTTGATATGAATTTA-ATA
1 AAAAATTCTAAAACTCATAAAATAAATTGAATTTTCCA-AAA-TGATTTAATATGAA-TTAGATA
* * * *
809195 AAAATATTTGATGAATTTTAAAAATTTTAAA-TTGAGAAAAATCTAGCCAAAGAAATTTACAAAG
63 AAAATATTTGAAGAATTTTAAAAATTATAAACTT-AGAAAAATCTAGTCAAAGAAATTTACAGAG
* * *
809259 TAAAAAACTCTGTATCTTAGAAACAAC
127 TAGAAAACTCTATATCTCAGAAACAAC
* * * * * **
809286 AAAAATTCTAAAACTCATAAAATAAATTGAATTTTTCAAAACTAATTTAACAAGAATTAGACAGC
1 AAAAATTCTAAAACTCATAAAATAAATTGAATTTTCCAAAA-TGATTTAATATGAATTAGATAAA
* * * *
809351 AATATTTTAAGAATTTTAGAAATTATAAACTTAGAAAAATCCCA-TCGAAGAAATTTTACAGAGT
65 AATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAAT-CTAGTCAAAGAAA-TTTACAGAGT
* ** * **
809415 AGAAAACTTTATATCTCAGTGATAGG
128 AGAAAACTCTATATCTCAGAAACAAC
* * *
809441 AAAAATTCTAAAACTTATAAAATAAATTGAATTTTTCTAAAATGATCTAATATGAATTATG-TAA
1 AAAAATTCTAAAACTCATAAAATAAATTGAA-TTTTCCAAAATGATTTAATATGAATTA-GATAA
* * * * *
809505 TAATATTTGAAGAATTTTGAAAATTATAAACTTAGAAAAATCTTGTTAGAGAAATTTACAGAGTA
64 AAATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTAGTCAAAGAAATTTACAGAGTA
809570 GAAAACT
129 GAAAACT
809577 GCGTATTTTG
Statistics
Matches: 236, Mismatches: 46, Indels: 17
0.79 0.15 0.06
Matches are distributed among these distances:
153 10 0.04
154 95 0.40
155 122 0.52
156 9 0.04
ACGTcount: A:0.49, C:0.09, G:0.10, T:0.32
Consensus pattern (153 bp):
AAAAATTCTAAAACTCATAAAATAAATTGAATTTTCCAAAATGATTTAATATGAATTAGATAAAA
ATATTTGAAGAATTTTAAAAATTATAAACTTAGAAAAATCTAGTCAAAGAAATTTACAGAGTAGA
AAACTCTATATCTCAGAAACAAC
Found at i:809936 original size:36 final size:33
Alignment explanation
Indices: 809858--809949 Score: 116
Period size: 36 Copynumber: 2.8 Consensus size: 33
809848 CAGCATTATC
*
809858 TTTC-AAGGCTAAGATAGAAAC-CTTTCTATTT
1 TTTCAAAGGCTAAGATAGAACCTCTTTCTATTT
**
809889 TTTCACGGGCTAAGATAGAACCTCTTTCCCTATCTT
1 TTTCAAAGGCTAAGATAGAACCTCTTT--CTAT-TT
809925 TTTCAAAGGCTAAGATAGAACCTCT
1 TTTCAAAGGCTAAGATAGAACCTCT
809950 CAATCACTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
31 4 0.08
32 14 0.27
33 4 0.08
35 4 0.08
36 25 0.49
ACGTcount: A:0.29, C:0.22, G:0.14, T:0.35
Consensus pattern (33 bp):
TTTCAAAGGCTAAGATAGAACCTCTTTCTATTT
Found at i:810387 original size:20 final size:20
Alignment explanation
Indices: 810341--810378 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
810331 GTTGGGCTCA
810341 ATGTATCGATAAAATTCACC
1 ATGTATCGATAAAATTCACC
810361 ATGTATCGATAAAATTCA
1 ATGTATCGATAAAATTCA
810379 TTATGTATCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (20 bp):
ATGTATCGATAAAATTCACC
Found at i:810607 original size:20 final size:21
Alignment explanation
Indices: 810582--810625 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
810572 GATACTTTGA
810582 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
810602 ATTATTTTTATGCTTGAAAAAC
1 ATTATTTTTA-GCTTGAAAAAC
810624 AT
1 AT
810626 CTATACTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:813729 original size:21 final size:21
Alignment explanation
Indices: 813705--813748 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
813695 TCTTTTCTCC
* * *
813705 TCTAATTCATTTATTTTCTTT
1 TCTAATCCACTTAATTTCTTT
813726 TCTAATCCACTTAATTTCTTT
1 TCTAATCCACTTAATTTCTTT
813747 TC
1 TC
813749 AAGAATATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.59
Consensus pattern (21 bp):
TCTAATCCACTTAATTTCTTT
Found at i:815866 original size:20 final size:20
Alignment explanation
Indices: 815841--815914 Score: 121
Period size: 20 Copynumber: 3.7 Consensus size: 20
815831 GTTGGGCTCA
* *
815841 ATGTATTGATACAATTCACC
1 ATGTATCGATACAATTCAAC
*
815861 ATGTATCGATACAATTCATC
1 ATGTATCGATACAATTCAAC
815881 ATGTATCGATACAATTCAAC
1 ATGTATCGATACAATTCAAC
815901 ATGTATCGATACAA
1 ATGTATCGATACAA
815915 GTGAGTTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATTCAAC
Found at i:816113 original size:20 final size:21
Alignment explanation
Indices: 816088--816131 Score: 72
Period size: 22 Copynumber: 2.1 Consensus size: 21
816078 GATACTTTGA
816088 ATTATTTTTA-CTTGAAAAAC
1 ATTATTTTTAGCTTGAAAAAC
816108 ATTATTTTTATGCTTGAAAAAC
1 ATTATTTTTA-GCTTGAAAAAC
816130 AT
1 AT
816132 CTATACTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 10 0.45
22 12 0.55
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.45
Consensus pattern (21 bp):
ATTATTTTTAGCTTGAAAAAC
Found at i:819997 original size:96 final size:96
Alignment explanation
Indices: 819827--820051 Score: 289
Period size: 96 Copynumber: 2.4 Consensus size: 96
819817 CAAAAATATA
*
819827 CCAAATT-TTATTCATC-GGGGATACTCCAACCCCATTATTCCGAGAGGATACTCCAACCCCATT
1 CCAAATTATTATT-ATCAGGGGACACTCCAACCCCATTATTCCGAGAGGATACTCCAACCCCATT
* *
819890 TTTGAACTTGTCAAGATTATTTTTAATTTTAC
65 TTTGAACTTGTCAAAATCATTTTTAATTTTAC
* * * *
819922 CCAAATTATTGTTAT-TGGGGACACTCCAACCCCATTATTTTCGAG-GGAATACTCCAACCTCAT
1 CCAAATTATTATTATCAGGGGACACTCCAACCCCATTA-TTCCGAGAGG-ATACTCCAACCCCAT
* *
819985 TTTTGAATTTGTCAAAATCATTTTTACTTTTAC
64 TTTTGAACTTGTCAAAATCATTTTTAATTTTAC
* *
820018 CTAAATTATTATTGTCAGGGG-CACTCCAACCCCA
1 CCAAATTATTATTATCAGGGGACACTCCAACCCCA
820052 ATTCCTCTGA
Statistics
Matches: 113, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
95 31 0.27
96 78 0.69
97 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36
Consensus pattern (96 bp):
CCAAATTATTATTATCAGGGGACACTCCAACCCCATTATTCCGAGAGGATACTCCAACCCCATTT
TTGAACTTGTCAAAATCATTTTTAATTTTAC
Found at i:830034 original size:28 final size:25
Alignment explanation
Indices: 830003--830062 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 25
829993 TCATTCGCAA
830003 AAAAAAACCAAAAAAACAAATAACAAAC
1 AAAAAAA-C-AAAAAA-AAATAACAAAC
*
830031 AAAAAAACACAAAAAAATAACAAAC
1 AAAAAAACAAAAAAAAATAACAAAC
*
830056 AAGAAAA
1 AAAAAAA
830063 GGGAGAAGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 17 0.57
26 5 0.17
27 1 0.03
28 7 0.23
ACGTcount: A:0.80, C:0.15, G:0.02, T:0.03
Consensus pattern (25 bp):
AAAAAAACAAAAAAAAATAACAAAC
Found at i:831336 original size:14 final size:14
Alignment explanation
Indices: 831313--831347 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
831303 ATTGTCAACA
*
831313 AAATTATTGTCAAG
1 AAATTTTTGTCAAG
831327 AAATTTTTGTCAAG
1 AAATTTTTGTCAAG
*
831341 AACTTTT
1 AAATTTT
831348 GTCGAGAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (14 bp):
AAATTTTTGTCAAG
Found at i:831741 original size:32 final size:30
Alignment explanation
Indices: 831646--831900 Score: 161
Period size: 32 Copynumber: 8.0 Consensus size: 30
831636 CCAATGGACA
*
831646 AACCTTCTTTAAAGCCCACACAAGTAGGTGGC
1 AACCTT-TTTAAAG-CCACACAAGTTGGTGGC
** * * * * *
831678 AACCCTTTCCAATGCCCATAGAAGCTAGTGGC
1 AA-CCTTTTTAAAG-CCACACAAGTTGGTGGC
*
831710 AGCCTTTTTCAAAGTCCACACAAGTTGGTGGC
1 AACCTTTTT-AAAG-CCACACAAGTTGGTGGC
* * * **
831742 GACCCTTTCTAAAGCCGACATAAGTCAGTGGC
1 -AACCTTTTTAAAGCC-ACACAAGTTGGTGGC
831774 AAGCCTTTTTAAAGCCACACAAGTTGGTGGC
1 AA-CCTTTTTAAAGCCACACAAGTTGGTGGC
* * * * *
831805 CACCCTTTCAAAGCCCACACAAGCTGGTGGT
1 AACCTTTTTAAAG-CCACACAAGTTGGTGGC
**
831836 AACCTTTCTTAAAGCCTACACAAGTCAGTGGC
1 AACCTTT-TTAAAGCC-ACACAAGTTGGTGGC
**
831868 AACCCTTTCAAAAGCC-CACATGAGTTGGTGGC
1 AA-CCTTTTTAAAGCCACACA--AGTTGGTGGC
831900 A
1 A
831901 TCTCCTTTTA
Statistics
Matches: 169, Mismatches: 43, Indels: 22
0.72 0.18 0.09
Matches are distributed among these distances:
30 13 0.08
31 43 0.25
32 97 0.57
33 16 0.09
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.23
Consensus pattern (30 bp):
AACCTTTTTAAAGCCACACAAGTTGGTGGC
Found at i:831772 original size:64 final size:61
Alignment explanation
Indices: 831648--831888 Score: 259
Period size: 64 Copynumber: 3.8 Consensus size: 61
831638 AATGGACAAA
* * * *
831648 CCTTCTTTAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAATGCCCATAGAAGCTAGTGGCAG
1 CCTT-TTTAAAG-CCACACAAGTTGGTGGCAACCCTTT-CAAAGCCCACATAAGCTAGTGGCAG
* *
831712 CCTTTTTCAAAGTCCACACAAGTTGGTGGCGACCCTTTCTAAAGCCGACATAAG-TCAGTGGCAA
1 CCTTTTT-AAAG-CCACACAAGTTGGTGGCAACCCTTTC-AAAGCCCACATAAGCT-AGTGGC-A
831776 G
61 G
* * * * *
831777 CCTTTTTAAAGCCACACAAGTTGGTGGCCACCCTTTCAAAGCCCACACAAGCTGGTGGTAA
1 CCTTTTTAAAGCCACACAAGTTGGTGGCAACCCTTTCAAAGCCCACATAAGCTAGTGGCAG
**
831838 CCTTTCTTAAAGCCTACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACAT
1 CCTTT-TTAAAGCC-ACACAAGTTGGTGGCAACCCTTTC-AAAGCCCACAT
831889 GAGTTGGTGG
Statistics
Matches: 152, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
61 6 0.04
62 24 0.16
63 52 0.34
64 61 0.40
65 9 0.06
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (61 bp):
CCTTTTTAAAGCCACACAAGTTGGTGGCAACCCTTTCAAAGCCCACATAAGCTAGTGGCAG
Found at i:831849 original size:94 final size:94
Alignment explanation
Indices: 831646--831899 Score: 255
Period size: 94 Copynumber: 2.7 Consensus size: 94
831636 CCAATGGACA
* * * * * * *
831646 AACCTTCTTTAAAGCCCACACAAGT-AGGTGGCAACCCTTTCCAATGCCCATAGAAGCTAGTGG-
1 AACCTT-TCTAAAGCCGACACAAGTCA-GTGGCAACCCTTTCAAAAGCCCACAG-AGTTGGTGGC
* * *
831709 CAGCCTTTTTCAAAGTCCACACAAGTTGGTGGCG
63 CA-CC-CTTTCAAAGCCCACACAAGCTGGTGGCG
* * * **
831743 ACCCTTTCTAAAGCCGACATAAGTCAGTGGCAAGCCTTTTTAAAGCCACACA-AGTTGGTGGCCA
1 AACCTTTCTAAAGCCGACACAAGTCAGTGGCAACCCTTTCAAAAGCC-CACAGAGTTGGTGGCCA
*
831807 CCCTTTCAAAGCCCACACAAGCTGGTGG-T
65 CCCTTTCAAAGCCCACACAAGCTGGTGGCG
*
831836 AACCTTTCTTAAAGCCTACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACATGAGTTGGTGGC
1 AACCTTTC-TAAAGCCGACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACA-GAGTTGGTGGC
831900 ATCTCCTTTT
Statistics
Matches: 130, Mismatches: 21, Indels: 14
0.79 0.13 0.08
Matches are distributed among these distances:
93 11 0.08
94 57 0.44
95 19 0.15
96 34 0.26
97 9 0.07
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.23
Consensus pattern (94 bp):
AACCTTTCTAAAGCCGACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACAGAGTTGGTGGCCAC
CCTTTCAAAGCCCACACAAGCTGGTGGCG
Found at i:831900 original size:126 final size:129
Alignment explanation
Indices: 831648--831888 Score: 312
Period size: 126 Copynumber: 1.9 Consensus size: 129
831638 AATGGACAAA
* * * *
831648 CCTTCTTTAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAATGCCCATAGAAGCTAGTGGCAGC
1 CCTTCTTTAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAAAGCCCACACAAGCTAGTGGCAAC
** * * *
831713 CTTTTTCAAAGTCCACACAAGTTGGTGGCGACCCTTTCTAAAGCCGACATAAGTCAGTGGCAAG
66 CTTTTTCAAAGTCCACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACATAAGTCAGTGGCAAG
* * * *
831777 CCTT-TTTAAAG-CCACACAAGTTGGTGGCCACCCTTT-CAAAGCCCACACAAGCTGGTGGTAAC
1 CCTTCTTTAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAAAGCCCACACAAGCTAGTGGCAAC
831839 CTTTCTT-AAAG-CCTACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACAT
66 CTTT-TTCAAAGTCC-ACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACAT
831889 GAGTTGGTGG
Statistics
Matches: 97, Mismatches: 13, Indels: 7
0.83 0.11 0.06
Matches are distributed among these distances:
125 2 0.02
126 59 0.61
127 25 0.26
128 7 0.07
129 4 0.04
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (129 bp):
CCTTCTTTAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAAAGCCCACACAAGCTAGTGGCAAC
CTTTTTCAAAGTCCACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACATAAGTCAGTGGCAAG
Found at i:831961 original size:43 final size:43
Alignment explanation
Indices: 831914--831997 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
831904 CCTTTTAAGC
*
831914 CCAATGTCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
1 CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
* * * *
831957 CCAATATCGTTGGCCTTGAATTAGCATATTGGCACCTTTAT
1 CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTAT
831998 CATCCTTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (43 bp):
CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
Found at i:832141 original size:52 final size:54
Alignment explanation
Indices: 832008--832326 Score: 231
Period size: 52 Copynumber: 6.2 Consensus size: 54
831998 CATCCTTCTT
** *
832008 ATCTTTAATTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--C--C-ATC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
* ** * * * * *
832057 ATCTTTAAGTCTGATATCGTTGGCCTTGAATCAGCATATTGGCA-TCTT-TAAC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
*
832109 AT-TTCTAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCATTCTTC--TC
1 ATCTT-TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
* * * * * * *
832161 ATCTTTAAGTCTAATGTCACTACCCGTGAATCAGCACATTGACATTCTTC-GT-
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
* * *
832213 ATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCA--CATT-TCTC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTC-TTCTATC
** * ** *
832265 ATCTTTAAATCCAATGAT-GCTAGCCTTGAATCAGCTCGCTGGCACTCTT-TATC
1 ATCTTTAAGCCCAATG-TCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
*
832318 TTCTTTAAG
1 ATCTTTAAG
832327 TCTAGTGCTG
Statistics
Matches: 213, Mismatches: 42, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
49 38 0.18
50 2 0.01
51 5 0.02
52 147 0.69
53 20 0.09
54 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.34
Consensus pattern (54 bp):
ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
Found at i:832225 original size:104 final size:101
Alignment explanation
Indices: 832002--832272 Score: 273
Period size: 104 Copynumber: 2.6 Consensus size: 101
831992 CTTTATCATC
** *
832002 CTTCTTATCTTTAATTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA-C--CATCATCTTTA
1 CTTC-TATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTC-TCATCTTTA
* ** ** * * *
832064 AGTCTGATATCGTTGGCCTTGAATCAGCATATTGGCAT
64 AGTCTAATATCACTACCCGTGAATCAGCACATTGACAT
* *
832102 CTT-TAACATTTCTAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCATTCTTCTCATCTT
1 CTTCTATC--TT-TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCA-TCTTCTCATCTT
*
832166 TAAGTCTAATGTCACTACCCGTGAATCAGCACATTGACATT
62 TAAGTCTAATATCACTACCCGTGAATCAGCACATTGACA-T
* *
832207 CTTCGTATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCA-CATTTCTCATCTTT
1 CTTC-TATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATC--TTCTCATCTTT
832271 AA
63 AA
832273 ATCCAATGAT
Statistics
Matches: 141, Mismatches: 18, Indels: 20
0.79 0.10 0.11
Matches are distributed among these distances:
98 3 0.02
100 5 0.04
101 35 0.25
102 1 0.01
103 1 0.01
104 86 0.61
105 7 0.05
107 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.35
Consensus pattern (101 bp):
CTTCTATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATCTTCTCATCTTTAAG
TCTAATATCACTACCCGTGAATCAGCACATTGACAT
Found at i:832966 original size:51 final size:51
Alignment explanation
Indices: 832903--833037 Score: 155
Period size: 51 Copynumber: 2.6 Consensus size: 51
832893 TTTTACTGAT
* * *
832903 TGTATCGATACATTATTCATTATAAT-GATACATTCTGGTTTTTTACCTAGA
1 TGTATCGATACATTATTCACTAT-ATGGATACATTCTGGGTTTTTACCCAGA
* *
832954 TGTATCGATACATTCTTCACTGTATGGATACATTCTGGGTTTTTACCCAGA
1 TGTATCGATACATTATTCACTATATGGATACATTCTGGGTTTTTACCCAGA
* * * * * *
833005 TGTATCAATGCATTCTTCAATGTATCGATACAT
1 TGTATCGATACATTATTCACTATATGGATACAT
833038 GCAAGCACAT
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
50 2 0.03
51 72 0.97
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (51 bp):
TGTATCGATACATTATTCACTATATGGATACATTCTGGGTTTTTACCCAGA
Found at i:834143 original size:18 final size:18
Alignment explanation
Indices: 834122--834158 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
834112 TAGCATGGAT
834122 TTAAGATTTTCATTAAAC
1 TTAAGATTTTCATTAAAC
834140 TTAAGATTTTCATTAAAC
1 TTAAGATTTTCATTAAAC
834158 T
1 T
834159 AACACTGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (18 bp):
TTAAGATTTTCATTAAAC
Found at i:835368 original size:95 final size:95
Alignment explanation
Indices: 835243--835440 Score: 288
Period size: 95 Copynumber: 2.1 Consensus size: 95
835233 CATTGGGGAT
* * *
835243 ACTCCAACCCCATTATTTCGAGGGGATACTCCAACCCCATTTTTAAACTTATCAAGATCTTTTTT
1 ACTCCAACCCCATTATTCCGAAGGGATACTCCAACCCCATTTTTAAACTTATCAAGATCATTTTT
*
835308 ACTTTTACCTAACTTATTATTGTCAGGGGC
66 ACTTTTACCTAAATTATTATTGTCAGGGGC
* * * * *
835338 ACTCCAACCCTATTATTCCGAAGGGATACTCCAACCTCATTTTTGAATTTGTCAAGATCATTTTT
1 ACTCCAACCCCATTATTCCGAAGGGATACTCCAACCCCATTTTTAAACTTATCAAGATCATTTTT
* *
835403 ACTTTTACCTAAATTATTGTTGTCGGGGGC
66 ACTTTTACCTAAATTATTATTGTCAGGGGC
*
835433 ACCCCAAC
1 ACTCCAAC
835441 TACATTCCTT
Statistics
Matches: 91, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
95 91 1.00
ACGTcount: A:0.26, C:0.25, G:0.13, T:0.36
Consensus pattern (95 bp):
ACTCCAACCCCATTATTCCGAAGGGATACTCCAACCCCATTTTTAAACTTATCAAGATCATTTTT
ACTTTTACCTAAATTATTATTGTCAGGGGC
Found at i:838277 original size:13 final size:13
Alignment explanation
Indices: 838259--838284 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
838249 CAATTTTTTG
838259 TGTATCGATACAT
1 TGTATCGATACAT
838272 TGTATCGATACAT
1 TGTATCGATACAT
838285 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:838296 original size:32 final size:33
Alignment explanation
Indices: 838239--838302 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
838229 TACAAGCCAA
**
838239 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
838272 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
838303 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:842091 original size:13 final size:13
Alignment explanation
Indices: 842073--842098 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
842063 CAATTTTTTG
842073 TGTATCGATACAT
1 TGTATCGATACAT
842086 TGTATCGATACAT
1 TGTATCGATACAT
842099 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:842110 original size:32 final size:33
Alignment explanation
Indices: 842053--842116 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
842043 TACAAGCCAA
**
842053 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
842086 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
842117 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:844281 original size:26 final size:26
Alignment explanation
Indices: 844252--844316 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
844242 AATAGTACCC
844252 ATGTATCGATACTGAATATCCATACA
1 ATGTATCGATACTGAATATCCATACA
*
844278 ATGTATCGATACTGAGTATCCATACA
1 ATGTATCGATACTGAATATCCATACA
*
844304 ATGTATTGATACT
1 ATGTATCGATACT
844317 AAGAACATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (26 bp):
ATGTATCGATACTGAATATCCATACA
Found at i:844309 original size:13 final size:13
Alignment explanation
Indices: 844268--844309 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
844258 CGATACTGAA
844268 TATCCATACAATG
1 TATCCATACAATG
* *
844281 TATCGATACTGA-G
1 TATCCATAC-AATG
844294 TATCCATACAATG
1 TATCCATACAATG
844307 TAT
1 TAT
844310 TGATACTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (13 bp):
TATCCATACAATG
Found at i:848301 original size:52 final size:51
Alignment explanation
Indices: 848245--848405 Score: 160
Period size: 52 Copynumber: 3.1 Consensus size: 51
848235 CAAGACGAGC
* *
848245 CTTAAGAAAGAAGAAAATGCCAATGTGTTGATTCAAGGCCAGCGACATTGGA
1 CTTAAGAAAGAA-AAAATGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
** ** * * * * *
848297 CTTAAAGATGGCCAAGATGCAAATATGCTGATTTAAGGCTAGCGATATTGGA
1 CTT-AAGAAAGAAAAAATGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
* * **
848349 CTTAAGAAAGAAAAATGTGCCAACATGCTGATTCAAGGCCAATGACATTGGA
1 CTTAAGAAAGAAAAA-ATGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
848401 CTTAA
1 CTTAA
848406 AGATGAAAAG
Statistics
Matches: 83, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
51 7 0.08
52 71 0.86
53 5 0.06
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.24
Consensus pattern (51 bp):
CTTAAGAAAGAAAAAATGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
Found at i:848679 original size:31 final size:31
Alignment explanation
Indices: 848617--848747 Score: 138
Period size: 31 Copynumber: 4.2 Consensus size: 31
848607 GGAAAAAGGA
* **
848617 TGCCACCAACTTGTATGGGCCTGAGGAAGGGT
1 TGCCACTAACTTGTATGGG-CTTTGGAAGGGT
*
848649 TGCCACTAACTTGTGTGGGCTTTGGAAGGGT
1 TGCCACTAACTTGTATGGGCTTTGGAAGGGT
* * * *
848680 TGCCACTAACTTGTGTAGGTTTTGGAAGGTT
1 TGCCACTAACTTGTATGGGCTTTGGAAGGGT
* **
848711 TGCCA-TCAATTTGTATGGGCTTTACAAGGGT
1 TGCCACT-AACTTGTATGGGCTTTGGAAGGGT
848742 TGCCAC
1 TGCCAC
848748 CGATTTGTGT
Statistics
Matches: 83, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
30 1 0.01
31 65 0.78
32 17 0.20
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.31
Consensus pattern (31 bp):
TGCCACTAACTTGTATGGGCTTTGGAAGGGT
Found at i:848835 original size:27 final size:26
Alignment explanation
Indices: 848805--848881 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 26
848795 TTTGAAAAGA
848805 AAAAAGGTGCCATGGAGTTGTGGACTT
1 AAAAAGGTGCCATGGAGTTGTGGA-TT
* **
848832 AAAAGGGTGCC-TCGGAGTTAAGGATT
1 AAAAAGGTGCCAT-GGAGTTGTGGATT
* * *
848858 TAAAAGGATGCCACGGAGTCGTGG
1 AAAAAGG-TGCCATGGAGTTGTGG
848882 GCTTTGAAAA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
26 8 0.21
27 30 0.79
ACGTcount: A:0.30, C:0.13, G:0.35, T:0.22
Consensus pattern (26 bp):
AAAAAGGTGCCATGGAGTTGTGGATT
Found at i:851032 original size:20 final size:20
Alignment explanation
Indices: 851007--851132 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
850997 TTTTACCCAG
851007 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
851027 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
851047 ATGTATCGATACATTCTATCTTTTTACCCTG
1 ATGTATCGAT--A--C-A--TTTTT---C-A
851078 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
851098 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
851118 ATGTATCGATACATT
1 ATGTATCGATACATT
851133 CTGTCTTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
20 58 0.70
21 1 0.01
22 1 0.01
24 6 0.07
25 1 0.01
26 1 0.01
27 4 0.05
29 1 0.01
31 10 0.12
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:851112 original size:71 final size:71
Alignment explanation
Indices: 850996--851162 Score: 316
Period size: 71 Copynumber: 2.4 Consensus size: 71
850986 GAAAGTCACA
850996 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
851061 TCTATC
66 TCTATC
*
851067 TTTTTACCCTGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
851132 TCTGTC
66 TCTATC
851138 TTTTTACCCAGATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACAT
851163 CTAGTTAAAA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (71 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTATC
Found at i:852478 original size:19 final size:19
Alignment explanation
Indices: 852454--852492 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
852444 AGCATGGGAT
852454 TTAAGATTTTCATTCAAAC
1 TTAAGATTTTCATTCAAAC
*
852473 TTAAGATTTTCATTTAAAC
1 TTAAGATTTTCATTCAAAC
852492 T
1 T
852493 AACACTCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.36, C:0.13, G:0.05, T:0.46
Consensus pattern (19 bp):
TTAAGATTTTCATTCAAAC
Found at i:858603 original size:22 final size:23
Alignment explanation
Indices: 858556--858608 Score: 74
Period size: 24 Copynumber: 2.3 Consensus size: 23
858546 TAATACTAAC
858556 TCATCAAATGCATCTTGGTTAAT
1 TCATCAAATGCATCTTGGTTAAT
*
858579 TCAATCAAATGCCTCTT-G-TAAT
1 TC-ATCAAATGCATCTTGGTTAAT
858601 TCATCAAA
1 TCATCAAA
858609 AGTGTAAGTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 6 0.21
22 6 0.21
23 3 0.11
24 13 0.46
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATCAAATGCATCTTGGTTAAT
Found at i:863066 original size:25 final size:27
Alignment explanation
Indices: 863010--863067 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
863000 ACATATACCC
* *
863010 ATGTATGGATACTGAATATCCAATACA
1 ATGTATCGATACTGAAGATCCAATACA
863037 ATGTATCGATACTG-AGATCC-ATACA
1 ATGTATCGATACTGAAGATCCAATACA
863062 ATGTAT
1 ATGTAT
863068 TGATTTATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 11 0.38
26 5 0.17
27 13 0.45
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.31
Consensus pattern (27 bp):
ATGTATCGATACTGAAGATCCAATACA
Found at i:863256 original size:14 final size:14
Alignment explanation
Indices: 863237--863263 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
863227 ATAATTCATT
863237 CAAAAACATTAATA
1 CAAAAACATTAATA
863251 CAAAAACATTAAT
1 CAAAAACATTAAT
863264 TGAACATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.15, G:0.00, T:0.22
Consensus pattern (14 bp):
CAAAAACATTAATA
Found at i:867637 original size:33 final size:33
Alignment explanation
Indices: 867593--867670 Score: 86
Period size: 33 Copynumber: 2.4 Consensus size: 33
867583 TGGAAACGGA
* *
867593 TGCCACCAACTTAATG-CGGCCTTGAGGACGGGT
1 TGCCACTAACTTAATGTCGGCCTT-AGGAAGGGT
** * *
867626 TGCCACTAACTTTGTGTGGGCCTTTGGAAGGGT
1 TGCCACTAACTTAATGTCGGCCTTAGGAAGGGT
867659 TGCCACTAACTT
1 TGCCACTAACTT
867671 TCTTTTAACC
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 32 0.84
34 6 0.16
ACGTcount: A:0.19, C:0.24, G:0.28, T:0.28
Consensus pattern (33 bp):
TGCCACTAACTTAATGTCGGCCTTAGGAAGGGT
Found at i:868593 original size:14 final size:14
Alignment explanation
Indices: 868570--868604 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
868560 ATTGTCAACA
*
868570 AAATTATTGTCAAG
1 AAATTTTTGTCAAG
868584 AAATTTTTGTCAAG
1 AAATTTTTGTCAAG
*
868598 AACTTTT
1 AAATTTT
868605 GTCGAGAACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (14 bp):
AAATTTTTGTCAAG
Found at i:868997 original size:32 final size:31
Alignment explanation
Indices: 868902--869141 Score: 143
Period size: 32 Copynumber: 7.7 Consensus size: 31
868892 CCAATGGACA
* *
868902 AACCTTCTTCAAAGCCCACACAAGTAGGTGGC
1 AACCTTTTTCAAAG-CCACACAAGTTGGTGGC
* * * * * * *
868934 AACCCTTTCCAATGCCCATAGAAGCTAGTGGC
1 AACCTTTTTCAAAG-CCACACAAGTTGGTGGC
*
868966 AGCCTTTTTCAAAGTCCACACAAGTTGGTGGC
1 AACCTTTTTCAAAG-CCACACAAGTTGGTGGC
* * * **
868998 GACC-CTTTCTAAAGCCGACATAAGTCAGTGGC
1 AACCTTTTTC-AAAGCC-ACACAAGTTGGTGGC
869030 AAGCCTTTTT-AAAGCCACACAAGTTGGTGGC
1 AA-CCTTTTTCAAAGCCACACAAGTTGGTGGC
* * * *
869061 -ACC-CTTTCAAAGCCCACACATGCTGGTGGT
1 AACCTTTTTCAAAG-CCACACAAGTTGGTGGC
* **
869091 AACCTTCTT-AAAGCCTACACAAGTCAGTGGC
1 AACCTTTTTCAAAGCC-ACACAAGTTGGTGGC
*
869122 AACC-CTTTCAAAAGCC-CACA
1 AACCTTTTTC-AAAGCCACACA
869142 TGAGTTGTGG
Statistics
Matches: 155, Mismatches: 42, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
28 3 0.02
29 6 0.04
30 23 0.15
31 39 0.25
32 79 0.51
33 2 0.01
34 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (31 bp):
AACCTTTTTCAAAGCCACACAAGTTGGTGGC
Found at i:869028 original size:64 final size:62
Alignment explanation
Indices: 868904--869141 Score: 234
Period size: 64 Copynumber: 3.8 Consensus size: 62
868894 AATGGACAAA
* * * *
868904 CCTTCTTCAAAGCCCACACAAGTAGGTGGCAACCCTTTCCAATGCCCATAGAAGCTAGTGGC-AG
1 CCTTTTTCAAAG-CCACACAAGTTGGTGGC-ACCCTTT-CAAAGCCCACAGAAGCTAGTGGCAAG
* *
868968 CCTTTTTCAAAGTCCACACAAGTTGGTGGCGACCCTTTCTAAAGCCGACATAAG-TCAGTGGCAA
1 CCTTTTTCAAAG-CCACACAAGTTGGTGGC-ACCCTTTC-AAAGCCCACAGAAGCT-AGTGGCAA
869032 G
62 G
* * * *
869033 CCTTTTT-AAAGCCACACAAGTTGGTGGCACCCTTTCAAAGCCCACACATGCTGGTGGTAA-
1 CCTTTTTCAAAGCCACACAAGTTGGTGGCACCCTTTCAAAGCCCACAGAAGCTAGTGGCAAG
* **
869093 CCTTCTT-AAAGCCTACACAAGTCAGTGGCAACCCTTTCAAAAGCCCACA
1 CCTTTTTCAAAGCC-ACACAAGTTGGTGGC-ACCCTTTC-AAAGCCCACA
869142 TGAGTTGTGG
Statistics
Matches: 151, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
60 12 0.08
61 30 0.20
62 17 0.11
63 29 0.19
64 54 0.36
65 9 0.06
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.23
Consensus pattern (62 bp):
CCTTTTTCAAAGCCACACAAGTTGGTGGCACCCTTTCAAAGCCCACAGAAGCTAGTGGCAAG
Found at i:869214 original size:43 final size:43
Alignment explanation
Indices: 869167--869250 Score: 123
Period size: 43 Copynumber: 2.0 Consensus size: 43
869157 CCTTTTAAGC
*
869167 CCAATGTCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
1 CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
* * * *
869210 CCAATATCGTTGGCCTTGAATTAGCATATTGGCACCTTTAT
1 CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTAT
869251 CATCCTTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.35
Consensus pattern (43 bp):
CCAATATCCTTGGACTTGAATCAGCACATTGGCACCTTTATGT
Found at i:869390 original size:52 final size:54
Alignment explanation
Indices: 869261--869578 Score: 215
Period size: 52 Copynumber: 6.2 Consensus size: 54
869251 CATCCTTCTT
** *
869261 ATCTTTAATTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA--C--C-ATC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
** * * * * *
869310 ATCTTTAAG--TGATATCGTTGGCCTTGAATCAGCATATTGGCA-TCTT-TAAC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
*
869360 AT-TTCTAAGCCCAATGTCGCTAGCCTTGAATCAACACATTGGCATTCTTC--TC
1 ATCTT-TAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
* * * * * * *
869412 ATCTTTAAGTCTAATGTCACTACCCGTGAATCAGCACATTGACATTCTTC-GT-
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
* * *
869464 ATCTTTAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGTGCA--CATT-TCTC
1 ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTG-GCATTC-TTCTATC
** * ** *
869517 ATCTTTAAATCCAATGAT-GCTAGCCTTGAATCAGCTCGCTGGCACTCTT-TATC
1 ATCTTTAAGCCCAATG-TCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
*
869570 TTCTTTAAG
1 ATCTTTAAG
869579 TCTAGTGCTG
Statistics
Matches: 210, Mismatches: 41, Indels: 32
0.74 0.14 0.11
Matches are distributed among these distances:
47 28 0.13
48 1 0.00
49 10 0.05
50 8 0.04
51 1 0.00
52 107 0.51
53 53 0.25
54 2 0.01
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (54 bp):
ATCTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCACATTGGCATTCTTCTATC
Found at i:870212 original size:50 final size:52
Alignment explanation
Indices: 870158--870265 Score: 141
Period size: 51 Copynumber: 2.1 Consensus size: 52
870148 TTTTACTGAT
* * *
870158 TGTATCGATACA-TTATTCATTATAAT-GATACATTCT-GTTTTTTACCTAGA
1 TGTATCGATACATTTATTCACTAT-ATGGATACATTCTGGGTTTTTACCCAGA
* *
870208 TGTATCGATACATTTCTTCACTGTATGGATACATTCTGGGTTTTTACCCAGA
1 TGTATCGATACATTTATTCACTATATGGATACATTCTGGGTTTTTACCCAGA
870260 TGTATC
1 TGTATC
870266 AATGCATTCT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
50 14 0.28
51 18 0.36
52 18 0.36
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.44
Consensus pattern (52 bp):
TGTATCGATACATTTATTCACTATATGGATACATTCTGGGTTTTTACCCAGA
Found at i:870276 original size:51 final size:51
Alignment explanation
Indices: 870184--870292 Score: 148
Period size: 51 Copynumber: 2.1 Consensus size: 51
870174 TCATTATAAT
* * * * *
870184 GATACATTCTGTTTTTTACCTAGATGTATCGATACATTTCTTCACTGTATG
1 GATACATTCTGGTTTTTACCCAGATGTATCAATACATTTCTTCAATGTATC
*
870235 GATACATTCTGGGTTTTTACCCAGATGTATCAATGCA-TTCTTCAATGTATC
1 GATACATTCT-GGTTTTTACCCAGATGTATCAATACATTTCTTCAATGTATC
870286 GATACAT
1 GATACAT
870293 GCAAGCACAT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
51 29 0.57
52 22 0.43
ACGTcount: A:0.26, C:0.18, G:0.15, T:0.41
Consensus pattern (51 bp):
GATACATTCTGGTTTTTACCCAGATGTATCAATACATTTCTTCAATGTATC
Found at i:871397 original size:18 final size:18
Alignment explanation
Indices: 871376--871412 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
871366 TAGCATGGAT
871376 TTAAGATTTTCATTAAAC
1 TTAAGATTTTCATTAAAC
871394 TTAAGATTTTCATTAAAC
1 TTAAGATTTTCATTAAAC
871412 T
1 T
871413 AACACTGCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.11, G:0.05, T:0.46
Consensus pattern (18 bp):
TTAAGATTTTCATTAAAC
Found at i:872668 original size:94 final size:92
Alignment explanation
Indices: 872495--872688 Score: 264
Period size: 94 Copynumber: 2.1 Consensus size: 92
872485 TCATGGGGAT
* * *
872495 ACTCCAACCCCTTATTTCGAGGGATACTCCAACCCATTTTTAAACTTATCAAGATCTTTTTTACT
1 ACTCCAACCCATTATTCCGAGGGATACTCCAACCCATTTTTAAACTTATCAAGATCATTTTTACT
*
872560 TTTACCTAACTTATTATTGTCAGGGGC
66 TTTACCTAAATTATTATTGTCAGGGGC
* * *
872587 ACTCCAACCCTATTATTCCGAAGGGATACTCCAACCTCATTTTTGAATTTGTCAAGATCATTTTT
1 ACTCCAACCC-ATTATTCCG-AGGGATACTCCAACC-CATTTTTAAACTTATCAAGATCATTTTT
* *
872652 AC-TTTACCTAAATTATTGTTGTCGGGGGC
63 ACTTTTACCTAAATTATTATTGTCAGGGGC
*
872681 ACCCCAAC
1 ACTCCAAC
872689 TACATTCCTT
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
92 10 0.11
93 7 0.08
94 46 0.52
95 26 0.29
ACGTcount: A:0.26, C:0.25, G:0.12, T:0.36
Consensus pattern (92 bp):
ACTCCAACCCATTATTCCGAGGGATACTCCAACCCATTTTTAAACTTATCAAGATCATTTTTACT
TTTACCTAAATTATTATTGTCAGGGGC
Found at i:872719 original size:94 final size:95
Alignment explanation
Indices: 872506--872724 Score: 241
Period size: 94 Copynumber: 2.3 Consensus size: 95
872496 CTCCAACCCC
* * *
872506 TTATTTCG-AGGGATACTCCAACC-CATTTTTAAACTTATCAAGATCTTTTTTACTTTTACCTAA
1 TTATTCCGAAGGGACACTCCAACCTCATTTTTAAACTTATCAAGATCATTTTTACTTTTACCTAA
* * *
872569 CTTATTATTGTCAGGGGCACTCCAACCCTA
66 ATTATTATTGTCAGGGGCACCCCAACACTA
* * * *
872599 TTATTCCGAAGGGATACTCCAACCTCATTTTTGAATTTGTCAAGATCATTTTTAC-TTTACCTAA
1 TTATTCCGAAGGGACACTCCAACCTCATTTTTAAACTTATCAAGATCATTTTTACTTTTACCTAA
* *
872663 ATTATTGTTGTCGGGGGCACCCCAACTAC-A
66 ATTATTATTGTCAGGGGCACCCCAAC-ACTA
* * * *
872693 TTCCTT-CGAGGGGACACTTCATCCTCATTTTT
1 TT-ATTCCGAAGGGACACTCCAACCTCATTTTT
872725 TAGCCAAAAA
Statistics
Matches: 107, Mismatches: 15, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
93 7 0.07
94 71 0.66
95 29 0.27
ACGTcount: A:0.25, C:0.24, G:0.13, T:0.38
Consensus pattern (95 bp):
TTATTCCGAAGGGACACTCCAACCTCATTTTTAAACTTATCAAGATCATTTTTACTTTTACCTAA
ATTATTATTGTCAGGGGCACCCCAACACTA
Found at i:875527 original size:13 final size:13
Alignment explanation
Indices: 875509--875534 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
875499 CAATTTTTTG
875509 TGTATCGATACAT
1 TGTATCGATACAT
875522 TGTATCGATACAT
1 TGTATCGATACAT
875535 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:875546 original size:32 final size:33
Alignment explanation
Indices: 875489--875552 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
875479 TACAAGCCAA
**
875489 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
875522 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
875553 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:877362 original size:21 final size:21
Alignment explanation
Indices: 877336--877385 Score: 100
Period size: 21 Copynumber: 2.4 Consensus size: 21
877326 TAATACTAAC
877336 TCATCAAATGCATCTTGTAAT
1 TCATCAAATGCATCTTGTAAT
877357 TCATCAAATGCATCTTGTAAT
1 TCATCAAATGCATCTTGTAAT
877378 TCATCAAA
1 TCATCAAA
877386 AGTGTAAGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.36, C:0.20, G:0.08, T:0.36
Consensus pattern (21 bp):
TCATCAAATGCATCTTGTAAT
Found at i:879362 original size:13 final size:13
Alignment explanation
Indices: 879344--879369 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
879334 CAATTTTTTG
879344 TGTATCGATACAT
1 TGTATCGATACAT
879357 TGTATCGATACAT
1 TGTATCGATACAT
879370 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:879381 original size:32 final size:33
Alignment explanation
Indices: 879324--879387 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
879314 TACAAGCCAA
**
879324 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
879357 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
879388 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:881552 original size:26 final size:26
Alignment explanation
Indices: 881523--881587 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
881513 AATAGTACCC
881523 ATGTATCGATACTGAATATCCATACA
1 ATGTATCGATACTGAATATCCATACA
*
881549 ATGTATCGATACTGAGTATCCATACA
1 ATGTATCGATACTGAATATCCATACA
*
881575 ATGTATTGATACT
1 ATGTATCGATACT
881588 AAGAACATAG
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.34
Consensus pattern (26 bp):
ATGTATCGATACTGAATATCCATACA
Found at i:881580 original size:13 final size:13
Alignment explanation
Indices: 881539--881580 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
881529 CGATACTGAA
881539 TATCCATACAATG
1 TATCCATACAATG
* *
881552 TATCGATACTGA-G
1 TATCCATAC-AATG
881565 TATCCATACAATG
1 TATCCATACAATG
881578 TAT
1 TAT
881581 TGATACTAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 4
0.74 0.13 0.13
Matches are distributed among these distances:
12 1 0.04
13 21 0.91
14 1 0.04
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.33
Consensus pattern (13 bp):
TATCCATACAATG
Found at i:885573 original size:52 final size:51
Alignment explanation
Indices: 885517--885677 Score: 160
Period size: 52 Copynumber: 3.1 Consensus size: 51
885507 CAAGACGAGC
*
885517 CTTAAGAAAGAAGAAAATGCCAATGTGTTGATTCAAGGCCAGCGACATTGGA
1 CTTAAGAAAGAA-AAAATGCCAATATGTTGATTCAAGGCCAGCGACATTGGA
** ** * * * * * *
885569 CTTAAAGATGGCCAAGATGCAAATATGCTGATTTAAGGCTAGCGATATTGGA
1 CTT-AAGAAAGAAAAAATGCCAATATGTTGATTCAAGGCCAGCGACATTGGA
* * **
885621 CATAAGAAAGAAAAATGTGCCAATATGTTGATTCAAGGCCAATGACATTGGA
1 CTTAAGAAAGAAAAA-ATGCCAATATGTTGATTCAAGGCCAGCGACATTGGA
885673 CTTAA
1 CTTAA
885678 AGATGAAAAG
Statistics
Matches: 81, Mismatches: 26, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
51 7 0.09
52 69 0.85
53 5 0.06
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.24
Consensus pattern (51 bp):
CTTAAGAAAGAAAAAATGCCAATATGTTGATTCAAGGCCAGCGACATTGGA
Found at i:885805 original size:52 final size:52
Alignment explanation
Indices: 885727--885826 Score: 164
Period size: 52 Copynumber: 1.9 Consensus size: 52
885717 AGAGAAAGAA
* *
885727 AAAGGTGTCAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGGT
1 AAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGGT
* *
885779 AAAGGTGCCAATATGCTAATTCAAGGCCAATGATATTGGGCTTAAAAA
1 AAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAA
885827 CGAAGGTCTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 44 1.00
ACGTcount: A:0.37, C:0.15, G:0.23, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGGT
Found at i:885875 original size:58 final size:52
Alignment explanation
Indices: 885735--885879 Score: 155
Period size: 52 Copynumber: 2.7 Consensus size: 52
885725 AAAAAGGTGT
* *
885735 CAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGGTAAAGGTGC
1 CAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAAAGGTAAAGATGC
* * * *
885787 CAATATGCTAATTCAAGGCCAATGATATTGGGCTTAAAAACGAAGGTCTAATGAATGC
1 CAATGTGCTAATTCAAGGCCAACGACATTGGGCTT-AAAA--AAGG--TAAAG-ATGC
* * *
885845 CAATGTGTTGATTCAAGGCCAACAACATTGGGCTT
1 CAATGTGCTAATTCAAGGCCAACGACATTGGGCTT
885880 GGAAAAGGAT
Statistics
Matches: 75, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
52 32 0.43
53 4 0.05
55 3 0.04
57 4 0.05
58 32 0.43
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (52 bp):
CAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAAAGGTAAAGATGC
Found at i:885933 original size:33 final size:31
Alignment explanation
Indices: 885889--885964 Score: 98
Period size: 31 Copynumber: 2.4 Consensus size: 31
885879 TGGAAAAGGA
*
885889 TGCCACCAACTTATATGGGCCTTGAGGAAGGGT
1 TGCCACTAACTTATATGGG-CTT-AGGAAGGGT
* * *
885922 TGCCACTAACTTGTGTGGGCTTTGGAAGGGT
1 TGCCACTAACTTATATGGGCTTAGGAAGGGT
885953 TGCCACTAACTT
1 TGCCACTAACTT
885965 GTGTAGGTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 20 0.51
32 3 0.08
33 16 0.41
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (31 bp):
TGCCACTAACTTATATGGGCTTAGGAAGGGT
Found at i:885952 original size:31 final size:31
Alignment explanation
Indices: 885914--886043 Score: 136
Period size: 31 Copynumber: 4.2 Consensus size: 31
885904 TGGGCCTTGA
885914 GGAAGGGTTGCCACTAACTTGTGTGGGCTTT
1 GGAAGGGTTGCCACTAACTTGTGTGGGCTTT
* *
885945 GGAAGGGTTGCCACTAACTTGTGTAGGTTTT
1 GGAAGGGTTGCCACTAACTTGTGTGGGCTTT
* * *
885976 GGAAGGTTTGCCA-TCAATTTGTATGGGCTTT
1 GGAAGGGTTGCCACT-AACTTGTGTGGGCTTT
** ** * *
886007 ACAAGGGTTGCCACCGATTTGTGTGGCCTTT
1 GGAAGGGTTGCCACTAACTTGTGTGGGCTTT
*
886038 AGAAGG
1 GGAAGG
886044 AGAAGGTGCC
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
30 1 0.01
31 81 0.99
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.33
Consensus pattern (31 bp):
GGAAGGGTTGCCACTAACTTGTGTGGGCTTT
Found at i:886043 original size:62 final size:63
Alignment explanation
Indices: 885889--886043 Score: 145
Period size: 62 Copynumber: 2.5 Consensus size: 63
885879 TGGAAAAGGA
* * * * * **
885889 TGCCACCAACTTATATGGGCCTTGAGGAAGGGTTGCCACTAACTTGTGTGGGCTTTGGAAGGGT
1 TGCCACCAACTTGTGTAGGCCTTTA-GAAGGGTTGCCACTAACTTGTATGGGCTTTACAAGGGT
* * * * *
885953 TGCCACTAACTTGTGTAGG-TTTTGGAAGGTTTGCCA-TCAATTTGTATGGGCTTTACAAGGGT
1 TGCCACCAACTTGTGTAGGCCTTTAGAAGGGTTGCCACT-AACTTGTATGGGCTTTACAAGGGT
* *
886015 TGCCACCGATTTGTGT-GGCCTTTAGAAGG
1 TGCCACCAACTTGTGTAGGCCTTTAGAAGG
886044 AGAAGGTGCC
Statistics
Matches: 72, Mismatches: 17, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
61 3 0.04
62 52 0.72
63 2 0.03
64 15 0.21
ACGTcount: A:0.20, C:0.17, G:0.30, T:0.32
Consensus pattern (63 bp):
TGCCACCAACTTGTGTAGGCCTTTAGAAGGGTTGCCACTAACTTGTATGGGCTTTACAAGGGT
Found at i:886120 original size:27 final size:27
Alignment explanation
Indices: 886084--886153 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
886074 AAGAAAAAGT
* *
886084 TGCCATGGAGTTGTGGACTTAAAAGGG
1 TGCCACGGAGTTGTGGACTTAAAAGGA
* ** *
886111 TGCCTCGGAGTTAAGGATTTAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGA
*
886138 TGCCACGGAGTCGTGG
1 TGCCACGGAGTTGTGG
886154 GCTTTGAAAA
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.26, C:0.14, G:0.36, T:0.24
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:888314 original size:20 final size:20
Alignment explanation
Indices: 888289--888414 Score: 90
Period size: 20 Copynumber: 5.8 Consensus size: 20
888279 TTTTACCCAG
888289 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
888309 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
*
888329 ATGTATCGATACATTCTATCTTTTTACCCTG
1 ATGTATCGAT--A--C-A--TTTTT---C-A
888360 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * *
888380 ATGTATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
888400 ATGTATCGATACATT
1 ATGTATCGATACATT
888415 CTGTCTTTTT
Statistics
Matches: 83, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
20 58 0.70
21 1 0.01
22 1 0.01
24 6 0.07
25 1 0.01
26 1 0.01
27 4 0.05
29 1 0.01
31 10 0.12
ACGTcount: A:0.30, C:0.15, G:0.13, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:888394 original size:71 final size:71
Alignment explanation
Indices: 888278--888444 Score: 316
Period size: 71 Copynumber: 2.4 Consensus size: 71
888268 AAAAGTCACA
888278 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
888343 TCTATC
66 TCTATC
*
888349 TTTTTACCCTGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
*
888414 TCTGTC
66 TCTATC
888420 TTTTTACCCAGATGTATCGATACAT
1 TTTTTACCCAGATGTATCGATACAT
888445 CTAGTTAAAA
Statistics
Matches: 93, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
71 93 1.00
ACGTcount: A:0.28, C:0.17, G:0.13, T:0.41
Consensus pattern (71 bp):
TTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATGTATGAATGTATCGATACAT
TCTATC
Found at i:903710 original size:28 final size:28
Alignment explanation
Indices: 903670--904028 Score: 243
Period size: 28 Copynumber: 12.1 Consensus size: 28
903660 CTAGAACGTT
* *
903670 CATCTTTTCAAAGCCCACAGGTTAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
903698 CATCTCTTCAAAGCCCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
903726 CACCCTTTTCAAAGCCCACAAGTCAGTGG
1 CA-TCTTTTCAAAGCCCACAAGTCAGTGG
* * *
903755 TAACTCTTTTTAAAGTCCACACAAGTCAGTCG
1 -CA-TCTTTTCAAAG-CC-CACAAGTCAGTGG
* * *
903787 CAACCTTGTTCAAAGCCCACACAAATCGGTGG
1 C-ATCTT-TTCAAAG-CC-CACAAGTCAGTGG
* * *
903819 CACCCTTTCAAAGCCCACAAGTTAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * *
903847 TAACTCTTTTCAAAGTCCACACAAATTAGTGG
1 -CA-TCTTTTCAAAG-CC-CACAAGTCAGTGG
* * * *
903879 CAACTCTATACAAAGCTCACACAAATCGGTGG
1 C-A-TCTTTTCAAAGC-C-CACAAGTCAGTGG
* * * * *
903911 CACCCTTCCAAAGCCTATAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
*
903939 CACCTTTTCAAAGCCCACAAGTCAGTGG
1 CATCTTTTCAAAGCCCACAAGTCAGTGG
* * *
903967 CATACCTTTCAAAGCCCATAAGTCGGTGG
1 CAT-CTTTTCAAAGCCCACAAGTCAGTGG
*
903996 CACCCTTTT-AAAGCCCACACAAGTCAGGTGG
1 CA-TCTTTTCAAAG-CC-CACAAGTCA-GTGG
904027 CA
1 CA
904029 ACTCTTTTTA
Statistics
Matches: 265, Mismatches: 49, Indels: 31
0.77 0.14 0.09
Matches are distributed among these distances:
28 76 0.29
29 58 0.22
30 42 0.16
31 19 0.07
32 70 0.26
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.23
Consensus pattern (28 bp):
CATCTTTTCAAAGCCCACAAGTCAGTGG
Found at i:903783 original size:32 final size:30
Alignment explanation
Indices: 903672--904036 Score: 238
Period size: 32 Copynumber: 12.2 Consensus size: 30
903662 AGAACGTTCA
* * *
903672 TCTTTTCAAAGCC-CACAGGTTAGTGGCA-
1 TCTTTTCAAAGCCACACAAGTCAGTGGAAC
* *
903700 TCTCTTCAAAGCC-CACAAGTCAGTGGCAC
1 TCTTTTCAAAGCCACACAAGTCAGTGGAAC
*
903729 CCTTTTCAAAGCC-CACAAGTCAGTGGTAAC
1 TCTTTTCAAAGCCACACAAGTCAGTGG-AAC
* *
903759 TCTTTTTAAAGTCCACACAAGTCAGTCGCAAC
1 TCTTTTCAAAG-CCACACAAGTCAGT-GGAAC
* * *
903791 -CTTGTTCAAAGCCCACACAAATCGGTGGCAC
1 TCTT-TTCAAAG-CCACACAAGTCAGTGGAAC
* *
903822 -CCTTTCAAAGCC-CACAAGTTAGTGGTAAC
1 TCTTTTCAAAGCCACACAAGTCAGTGG-AAC
* *
903851 TCTTTTCAAAGTCCACACAAATTAGTGGCAAC
1 TCTTTTCAAAG-CCACACAAGTCAGTGG-AAC
* * * * *
903883 TCTATACAAAGCTCACACAAATCGGTGGCAC
1 TCTTTTCAAAGC-CACACAAGTCAGTGGAAC
* * * * *
903914 -CCTTCCAAAGCC-TATAAGTCAGTGGCAC
1 TCTTTTCAAAGCCACACAAGTCAGTGGAAC
903942 -CTTTTCAAAGCC-CACAAGTCAGTGGCATAC
1 TCTTTTCAAAGCCACACAAGTCAGTGG-A-AC
* * *
903972 -C-TTTCAAAGCC-CATAAGTCGGTGGCAC
1 TCTTTTCAAAGCCACACAAGTCAGTGGAAC
*
903999 CCTTTT-AAAGCCCACACAAGTCAGGTGGCAAC
1 TCTTTTCAAAG-CCACACAAGTCA-GTGG-AAC
904031 TCTTTT
1 TCTTTT
904037 TAAATCATCA
Statistics
Matches: 271, Mismatches: 47, Indels: 34
0.77 0.13 0.10
Matches are distributed among these distances:
27 2 0.01
28 73 0.27
29 55 0.20
30 45 0.17
31 19 0.07
32 76 0.28
33 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (30 bp):
TCTTTTCAAAGCCACACAAGTCAGTGGAAC
Found at i:903840 original size:92 final size:89
Alignment explanation
Indices: 903672--904036 Score: 386
Period size: 92 Copynumber: 4.1 Consensus size: 89
903662 AGAACGTTCA
* * * * * *
903672 TCTTTTCAAAG-CC-CACAGGTTAGTGGC-ATCTCTTCAAAGCCCACAAGTCAGTGGCACCCTTT
1 TCTTTTCAAAGTCCACACAAGTCAGTGGCAACCTTTTCAAAGCCCACAAATCGGTGGCACCC-TT
903734 TCAAAGCCCACAAGTCAGTGGTAAC
65 TCAAAGCCCACAAGTCAGTGGTAAC
* *
903759 TCTTTTTAAAGTCCACACAAGTCAGTCGCAACCTTGTTCAAAGCCCACACAAATCGGTGGCACCC
1 TCTTTTCAAAGTCCACACAAGTCAGTGGCAACCTT-TTCAAAG-CC-CACAAATCGGTGGCACCC
*
903824 TTTCAAAGCCCACAAGTTAGTGGTAAC
63 TTTCAAAGCCCACAAGTCAGTGGTAAC
* * * *
903851 TCTTTTCAAAGTCCACACAAATTAGTGGCAACTCTATACAAAGCTCACACAAATCGGTGGCACCC
1 TCTTTTCAAAGTCCACACAAGTCAGTGGCAAC-CTTTTCAAAGC-C-CACAAATCGGTGGCACCC
* * * *
903916 TTCCAAAGCCTATAAGTCAGTGG-CAC
63 TTTCAAAGCCCACAAGTCAGTGGTAAC
* *
903942 -CTTTTCAAAG-CC-CACAAGTCAGTGGCATACC-TTTCAAAGCCCATAAGTCGGTGGCACCCTT
1 TCTTTTCAAAGTCCACACAAGTCAGTGGCA-ACCTTTTCAAAGCCCACAAATCGGTGGCACCCTT
* *
904003 TTAAAGCCCACACAAGTCAGGTGGCAAC
65 TCAAAG-CC-CACAAGTCA-GTGGTAAC
904031 TCTTTT
1 TCTTTT
904037 TAAATCATCA
Statistics
Matches: 233, Mismatches: 31, Indels: 25
0.81 0.11 0.09
Matches are distributed among these distances:
85 22 0.09
86 3 0.01
87 24 0.10
88 20 0.09
89 17 0.07
90 18 0.08
91 10 0.04
92 101 0.43
93 18 0.08
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (89 bp):
TCTTTTCAAAGTCCACACAAGTCAGTGGCAACCTTTTCAAAGCCCACAAATCGGTGGCACCCTTT
CAAAGCCCACAAGTCAGTGGTAAC
Found at i:910173 original size:13 final size:13
Alignment explanation
Indices: 910155--910180 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
910145 CAATTTTTTG
910155 TGTATCGATACAT
1 TGTATCGATACAT
910168 TGTATCGATACAT
1 TGTATCGATACAT
910181 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:910245 original size:21 final size:20
Alignment explanation
Indices: 910219--910295 Score: 91
Period size: 21 Copynumber: 3.8 Consensus size: 20
910209 CTGCCAAGAA
910219 ATGTATCGATACATCTTTTTT
1 ATGTATCGATACAT-TTTTTT
*****
910240 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTTTTTT
910260 ATGTATCGATACATTTTTTT
1 ATGTATCGATACATTTTTTT
910280 CATGTATCGATACATT
1 -ATGTATCGATACATT
910296 GCAACATGTA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 29 0.64
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.44
Consensus pattern (20 bp):
ATGTATCGATACATTTTTTT
Found at i:910265 original size:20 final size:20
Alignment explanation
Indices: 910240--910312 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
910230 CATCTTTTTT
910240 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
910260 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACA-TTGCAAC
910281 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
910301 ATGTATCGATAC
1 ATGTATCGATAC
910313 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:910279 original size:41 final size:41
Alignment explanation
Indices: 910219--910312 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
910209 CTGCCAAGAA
*
910219 ATGTATCGATACATCTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
910260 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
910301 ATGTATCGATAC
1 ATGTATCGATAC
910313 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:912773 original size:13 final size:13
Alignment explanation
Indices: 912755--912793 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
912745 ATAATCACCC
*
912755 TGTATCGATACAG
1 TGTATCGATACAA
912768 TGTATCGATACAA
1 TGTATCGATACAA
912781 TGTATCGATACAA
1 TGTATCGATACAA
912794 CAAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:912804 original size:20 final size:20
Alignment explanation
Indices: 912779--912857 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
912769 GTATCGATAC
912779 AATGTATCGATACAACAAAA
1 AATGTATCGATACAACAAAA
* *
912799 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACA-ACAA----AA
*
912824 GATGTATCGATAC-ACAAAA
1 AATGTATCGATACAACAAAA
912843 ACATGTATCGATACA
1 A-ATGTATCGATACA
912858 TTTTGGACAT
Statistics
Matches: 46, Mismatches: 6, Indels: 13
0.71 0.09 0.20
Matches are distributed among these distances:
19 1 0.02
20 26 0.57
21 3 0.07
23 3 0.07
25 13 0.28
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAACAAAA
Found at i:914892 original size:15 final size:15
Alignment explanation
Indices: 914872--914902 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
914862 ATTTCGTTTG
*
914872 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
914887 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
914902 G
1 G
914903 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:918983 original size:13 final size:13
Alignment explanation
Indices: 918965--918990 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
918955 CAATTTTTTG
918965 TGTATCGATACAT
1 TGTATCGATACAT
918978 TGTATCGATACAT
1 TGTATCGATACAT
918991 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:919076 original size:20 final size:20
Alignment explanation
Indices: 919051--919122 Score: 99
Period size: 20 Copynumber: 3.5 Consensus size: 20
919041 ATCTTTTTTT
919051 TGTATCGATACATTGCAACA
1 TGTATCGATACATTGCAACA
****
919071 TGTATCGATACATTTTTTTCA
1 TGTATCGATACA-TTGCAACA
919092 TGTATCGATACATTGCAACA
1 TGTATCGATACATTGCAACA
919112 TGTATCGATAC
1 TGTATCGATAC
919123 TTTGAATTGT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 27 0.63
21 16 0.37
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATTGCAACA
Found at i:919089 original size:41 final size:41
Alignment explanation
Indices: 919029--919122 Score: 161
Period size: 41 Copynumber: 2.3 Consensus size: 41
919019 CTGCCAAGAA
**
919029 ATGTATCGATACATCTTTTTTTTGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
*
919070 ATGTATCGATACATTTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
919111 ATGTATCGATAC
1 ATGTATCGATAC
919123 TTTGAATTGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:919095 original size:21 final size:21
Alignment explanation
Indices: 919029--919105 Score: 86
Period size: 21 Copynumber: 3.7 Consensus size: 21
919019 CTGCCAAGAA
919029 ATGTATCGATACATCTTTTTT-
1 ATGTATCGATACAT-TTTTTTC
* ****
919050 TTGTATCGATACA-TTGCAAC
1 ATGTATCGATACATTTTTTTC
919070 ATGTATCGATACATTTTTTTC
1 ATGTATCGATACATTTTTTTC
919091 ATGTATCGATACATT
1 ATGTATCGATACATT
919106 GCAACATGTA
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
19 2 0.05
20 12 0.27
21 30 0.68
ACGTcount: A:0.27, C:0.16, G:0.12, T:0.45
Consensus pattern (21 bp):
ATGTATCGATACATTTTTTTC
Found at i:919822 original size:20 final size:20
Alignment explanation
Indices: 919797--919848 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
919787 AGGCTCAATA
* *
919797 TATCGATACATTTTACCATG
1 TATCGATACAATTCACCATG
* *
919817 TATCGATAAAATTCATCATG
1 TATCGATACAATTCACCATG
919837 TATCGATACAAT
1 TATCGATACAAT
919849 GTATCAATAC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (20 bp):
TATCGATACAATTCACCATG
Found at i:919854 original size:20 final size:19
Alignment explanation
Indices: 919797--919854 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
919787 AGGCTCAATA
* *
919797 TATCGATACATTTTACCATG
1 TATCGATACA-ATTATCATG
*
919817 TATCGATAAAATTCATCATG
1 TATCGATACAATT-ATCATG
919837 TATCGATACAATGTATCA
1 TATCGATACAAT-TATCA
919855 ATACTGAGTG
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 2 0.06
20 29 0.91
21 1 0.03
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (19 bp):
TATCGATACAATTATCATG
Found at i:920035 original size:69 final size:69
Alignment explanation
Indices: 919961--920185 Score: 197
Period size: 69 Copynumber: 3.2 Consensus size: 69
919951 CATCTGGGTG
919961 TGTATCGATACTTTCTTGGGTTGACTTTTGTAGCTTAAGTCAACCTTTATGTATCGATACAAATA
1 TGTATCGATACTTTCTTGGGTTGACTTTTGTAGCTTAAGTCAACCTTTATGTATCGATACAAATA
920026 CCTA
66 CCTA
* * ** * * ** *
920030 CGTATCGATAATTT-TTCAAGTTG--TATTGATA-CTATGAACATGTACCGTTATAATGTATCTA
1 TGTATCGATACTTTCTT-GGGTTGACTTTTG-TAGCT-T-AA-GTCAACC-TT-T-ATGTATCGA
** *** *
920091 TACATTTGGGTG
58 TACAAATACCTA
* *
920103 TATATCGATACTTTCTTGGGTTGACCTTTGTAGCTTAAGTCAACCTTTATGTATCGATACAAATA
1 TGTATCGATACTTTCTTGGGTTGACTTTTGTAGCTTAAGTCAACCTTTATGTATCGATACAAATA
920168 CCTA
66 CCTA
920172 TGTATCGATACTTT
1 TGTATCGATACTTT
920186 AGATTATTTT
Statistics
Matches: 111, Mismatches: 33, Indels: 24
0.66 0.20 0.14
Matches are distributed among these distances:
67 6 0.05
68 5 0.05
69 45 0.41
70 5 0.05
71 4 0.04
72 5 0.05
73 31 0.28
74 5 0.05
75 5 0.05
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41
Consensus pattern (69 bp):
TGTATCGATACTTTCTTGGGTTGACTTTTGTAGCTTAAGTCAACCTTTATGTATCGATACAAATA
CCTA
Found at i:920066 original size:142 final size:142
Alignment explanation
Indices: 919889--920181 Score: 507
Period size: 142 Copynumber: 2.1 Consensus size: 142
919879 TCAGTTTTAT
* *
919889 GTATCGATACTTTTTCAACGTGTATTGATACTATGAACATGTATCGTTATAATGTATCGATACAT
1 GTATCGATAATTTTTCAACGTGTATTGATACTATGAACATGTACCGTTATAATGTATCGATACAT
* *
919954 CTGGGTGTGTATCGATACTTTCTTGGGTTGACTTTTGTAGCTTAAGTCAACCTTTATGTATCGAT
66 CTGGGTGTATATCGATACTTTCTTGGGTTGACCTTTGTAGCTTAAGTCAACCTTTATGTATCGAT
920019 ACAAATACCTAC
131 ACAAATACCTAC
*
920031 GTATCGATAATTTTTCAA-GTTGTATTGATACTATGAACATGTACCGTTATAATGTATCTATACA
1 GTATCGATAATTTTTCAACG-TGTATTGATACTATGAACATGTACCGTTATAATGTATCGATACA
*
920095 TTTGGGTGTATATCGATACTTTCTTGGGTTGACCTTTGTAGCTTAAGTCAACCTTTATGTATCGA
65 TCTGGGTGTATATCGATACTTTCTTGGGTTGACCTTTGTAGCTTAAGTCAACCTTTATGTATCGA
*
920160 TACAAATACCTAT
130 TACAAATACCTAC
920173 GTATCGATA
1 GTATCGATA
920182 CTTTAGATTA
Statistics
Matches: 143, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
141 1 0.01
142 142 0.99
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (142 bp):
GTATCGATAATTTTTCAACGTGTATTGATACTATGAACATGTACCGTTATAATGTATCGATACAT
CTGGGTGTATATCGATACTTTCTTGGGTTGACCTTTGTAGCTTAAGTCAACCTTTATGTATCGAT
ACAAATACCTAC
Found at i:921740 original size:51 final size:51
Alignment explanation
Indices: 921662--921763 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
921652 CCTTTGAAAG
* *
921662 CTTGATGATCCTAACTCATATACTTAGGTTATAAGCTTAAGCTTAAATGGT
1 CTTGATGATCCTAACTCATACACTTAGGTTATAAGATTAAGCTTAAATGGT
* *
921713 CTTGATGATCCTAACTCATACATTTAGGTTATAAGATTGAGCTTAAATGGT
1 CTTGATGATCCTAACTCATACACTTAGGTTATAAGATTAAGCTTAAATGGT
921764 TTTCTAACCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.37
Consensus pattern (51 bp):
CTTGATGATCCTAACTCATACACTTAGGTTATAAGATTAAGCTTAAATGGT
Found at i:922114 original size:15 final size:14
Alignment explanation
Indices: 922094--922186 Score: 80
Period size: 15 Copynumber: 6.4 Consensus size: 14
922084 TCATGTAGTT
922094 AATTTATTTTCTTAC
1 AATTTATTTT-TTAC
* * *
922109 AATTTAATTTATGC
1 AATTTATTTTTTAC
*
922123 AATTTATTTTCTTGC
1 AATTTATTTT-TTAC
922138 AATTTACTTTTTTAC
1 AATTTA-TTTTTTAC
* *
922153 AA-TTAATTTATAC
1 AATTTATTTTTTAC
*
922166 AATTTATTTTCTTGC
1 AATTTATTTT-TTAC
922181 AATTTA
1 AATTTA
922187 ATTTAAACAA
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
13 8 0.13
14 20 0.32
15 31 0.49
16 4 0.06
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (14 bp):
AATTTATTTTTTAC
Found at i:922169 original size:43 final size:44
Alignment explanation
Indices: 922094--922186 Score: 154
Period size: 43 Copynumber: 2.1 Consensus size: 44
922084 TCATGTAGTT
*
922094 AATTTATTTTCTTACAATTTAATTTATGCAATTTATTTTCTTGC
1 AATTTATTTTCTTACAATTTAATTTATACAATTTATTTTCTTGC
922138 AATTTACTTTT-TTACAA-TTAATTTATACAATTTATTTTCTTGC
1 AATTTA-TTTTCTTACAATTTAATTTATACAATTTATTTTCTTGC
922181 AATTTA
1 AATTTA
922187 ATTTAAACAA
Statistics
Matches: 47, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
43 31 0.66
44 12 0.26
45 4 0.09
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.56
Consensus pattern (44 bp):
AATTTATTTTCTTACAATTTAATTTATACAATTTATTTTCTTGC
Found at i:922196 original size:29 final size:29
Alignment explanation
Indices: 922137--922220 Score: 109
Period size: 29 Copynumber: 2.9 Consensus size: 29
922127 TATTTTCTTG
* *
922137 CAATTTACTTTT-TTACAA-TTAATTTATA
1 CAATTTA-TTTTCTTGCAATTTAATTTAAA
922165 CAATTTATTTTCTTGCAATTTAATTTAAA
1 CAATTTATTTTCTTGCAATTTAATTTAAA
* *
922194 CAATCTATTTTCTTGTAATTTAATTTA
1 CAATTTATTTTCTTGCAATTTAATTTA
922221 TTTTCTTGTA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 4 0.08
28 12 0.24
29 34 0.68
ACGTcount: A:0.33, C:0.11, G:0.02, T:0.54
Consensus pattern (29 bp):
CAATTTATTTTCTTGCAATTTAATTTAAA
Found at i:922224 original size:20 final size:20
Alignment explanation
Indices: 922199--922240 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
922189 TTAAACAATC
922199 TATTTTCTTGTAATTTAATT
1 TATTTTCTTGTAATTTAATT
922219 TATTTTCTTGTAATTTAATT
1 TATTTTCTTGTAATTTAATT
922239 TA
1 TA
922241 AGTTAATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.64
Consensus pattern (20 bp):
TATTTTCTTGTAATTTAATT
Found at i:924475 original size:12 final size:14
Alignment explanation
Indices: 924436--924475 Score: 50
Period size: 12 Copynumber: 3.0 Consensus size: 14
924426 TATACTCTAG
924436 TTCTTTCAATTTAAA
1 TTCTTTCAA-TTAAA
924451 TTCTTTC-ATTAAA
1 TTCTTTCAATTAAA
924464 -T-TTTCAATTAAA
1 TTCTTTCAATTAAA
924476 GGCTTGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.17
12 7 0.29
13 5 0.21
14 1 0.04
15 7 0.29
ACGTcount: A:0.35, C:0.12, G:0.00, T:0.53
Consensus pattern (14 bp):
TTCTTTCAATTAAA
Found at i:924546 original size:183 final size:183
Alignment explanation
Indices: 924238--924573 Score: 611
Period size: 183 Copynumber: 1.8 Consensus size: 183
924228 TAATCTTTCT
**
924238 TCTCTTACACTCTAGTTCTTTAAATTTAAATTTGTTCATTGTATTTTCAATTAAAGGCTTGTCAA
1 TCTCTTACACTCTAGTTCTTTAAATTTAAATTTGTTCATTAAATTTTCAATTAAAGGCTTGTCAA
924303 TGAATTCATTAATTATTTTTCAAATACATATACATAAGGTCTTAATTAAATATTTTTATACATGA
66 TGAATTCATTAATTATTTTTCAAATACATATACATAAGGTCTTAATTAAATATTTTTATACATGA
*
924368 AAATTTTTAATTAGGATTTTTATTATAGGCTTTTCAAATACATATACATAAGG
131 AAATTTTTAACTAGGATTTTTATTATAGGCTTTTCAAATACATATACATAAGG
* *
924421 TCTCTTATACTCTAGTTCTTTCAATTTAAATTCT-TTCATTAAATTTTCAATTAAAGGCTTGTCA
1 TCTCTTACACTCTAGTTCTTTAAATTTAAATT-TGTTCATTAAATTTTCAATTAAAGGCTTGTCA
924485 ATGAATTCATTAATTATTTTTCAAATACATATACATAAGGTCTTAATTAAATATTTTTATACATG
65 ATGAATTCATTAATTATTTTTCAAATACATATACATAAGGTCTTAATTAAATATTTTTATACATG
924550 AAAATTTTTAACTAGGATTTTTAT
130 AAAATTTTTAACTAGGATTTTTAT
924574 ACATGAATTT
Statistics
Matches: 147, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
183 146 0.99
184 1 0.01
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (183 bp):
TCTCTTACACTCTAGTTCTTTAAATTTAAATTTGTTCATTAAATTTTCAATTAAAGGCTTGTCAA
TGAATTCATTAATTATTTTTCAAATACATATACATAAGGTCTTAATTAAATATTTTTATACATGA
AAATTTTTAACTAGGATTTTTATTATAGGCTTTTCAAATACATATACATAAGG
Found at i:924882 original size:17 final size:17
Alignment explanation
Indices: 924862--924895 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
924852 TTAATTTTAA
*
924862 TTATTTTTAAATTAATT
1 TTATATTTAAATTAATT
*
924879 TTATATTTAATTTAATT
1 TTATATTTAAATTAATT
924896 CATTTGTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTATATTTAAATTAATT
Found at i:924895 original size:21 final size:23
Alignment explanation
Indices: 924836--924900 Score: 57
Period size: 21 Copynumber: 3.0 Consensus size: 23
924826 ATATATGGAC
* *
924836 AATTTTTTAATTTCACTTAATTTT
1 AATTATTTAATTT-AATTAATTTT
*
924860 AATTATTT--TTAAATTAATTTT
1 AATTATTTAATTTAATTAATTTT
*
924881 -A-TATTTAATTTAATTCATTT
1 AATTATTTAATTTAATTAATTT
924901 GTTAAGCAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
19 5 0.15
20 1 0.03
21 19 0.56
22 2 0.06
24 7 0.21
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
AATTATTTAATTTAATTAATTTT
Found at i:928257 original size:31 final size:31
Alignment explanation
Indices: 928219--928309 Score: 146
Period size: 31 Copynumber: 2.9 Consensus size: 31
928209 TTGAAAAATG
928219 TATCGATACATCTAGGAAAAAAGATAGAATA
1 TATCGATACATCTAGGAAAAAAGATAGAATA
* *
928250 TATCGATACATCTGGGAAAAAAGATAAAATA
1 TATCGATACATCTAGGAAAAAAGATAGAATA
* *
928281 TATCGATACATCTAGGTAAAAAGACAGAA
1 TATCGATACATCTAGGAAAAAAGATAGAA
928310 CACCTTGCCT
Statistics
Matches: 54, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 54 1.00
ACGTcount: A:0.51, C:0.11, G:0.16, T:0.22
Consensus pattern (31 bp):
TATCGATACATCTAGGAAAAAAGATAGAATA
Found at i:929109 original size:46 final size:46
Alignment explanation
Indices: 929046--929164 Score: 177
Period size: 46 Copynumber: 2.6 Consensus size: 46
929036 TAAGGGAAAA
929046 GTGGACAATGTGCTGATTCAAGGCTAGCAACATTGAGCTAATAAAG
1 GTGGACAATGTGCTGATTCAAGGCTAGCAACATTGAGCTAATAAAG
* * *
929092 GTGGACAATGTGTTGATTAAAGGCTAGCGACATTGAGCTAATAAAG
1 GTGGACAATGTGCTGATTCAAGGCTAGCAACATTGAGCTAATAAAG
* * *
929138 GT-GCCAATATGCTGATTCAATGCTAGC
1 GTGGACAATGTGCTGATTCAAGGCTAGC
929165 GATATCGGAC
Statistics
Matches: 65, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
45 20 0.31
46 45 0.69
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (46 bp):
GTGGACAATGTGCTGATTCAAGGCTAGCAACATTGAGCTAATAAAG
Done.