Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold436
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 700632
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 499 characters in sequence are not A, C, G, or T
File 1 of 5
Found at i:411 original size:20 final size:20
Alignment explanation
Indices: 361--414 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
351 ATGTATTGAT
*
361 ACAATGTATCAATACAACAA
1 ACAATGTATCGATACAACAA
**
381 ACAATGTATCGATACAATGA
1 ACAATGTATCGATACAACAA
401 ACAATGTATCGATA
1 ACAATGTATCGATA
415 TAAATTGTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.24
Consensus pattern (20 bp):
ACAATGTATCGATACAACAA
Found at i:1664 original size:38 final size:37
Alignment explanation
Indices: 1592--1725 Score: 106
Period size: 38 Copynumber: 3.5 Consensus size: 37
1582 GTTTAAGTTA
* * **
1592 ATTGAAATCTAAAAGATAAGGCTAATGCATAAATTTTTT
1 ATTGAAATTTAAAAGATATGAATAAT--ATAAATTTTTT
* * * * * *
1631 ATTGGATTTTGAAAGATATTAGTAATTATAAATTATTT
1 ATTGAAATTTAAAAGATATGAATAA-TATAAATTTTTT
*
1669 ATTGAAATTTAAAAGATGTGAATAATATAAATTTTTTT
1 ATTGAAATTTAAAAGATATGAATAATATAAA-TTTTTT
* * *
1707 ATTAAAATTCAAAAAATAT
1 ATTGAAATTTAAAAGATAT
1726 AACTAATGTA
Statistics
Matches: 73, Mismatches: 20, Indels: 5
0.74 0.20 0.05
Matches are distributed among these distances:
37 6 0.08
38 49 0.67
39 17 0.23
40 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.10, T:0.41
Consensus pattern (37 bp):
ATTGAAATTTAAAAGATATGAATAATATAAATTTTTT
Found at i:1997 original size:67 final size:67
Alignment explanation
Indices: 1888--2022 Score: 189
Period size: 67 Copynumber: 2.0 Consensus size: 67
1878 TAAATGTGAT
* * * *
1888 TAATGCATAGATTATTGATGGGAATTAAATTCCTTTTCATATGAAAGAAGTTGATAAGACTAATG
1 TAATGCATAGATTATTGATGGGAATCAAAATCCTTTTCATATGAAAAAAATTGATAAGACTAATG
1953 CA
66 CA
* * * * *
1955 TAATGCATAGATTTTTTATGGGAATCAAAATCTTTTTTATATGAAAAAAATTGATAAGAGTAATG
1 TAATGCATAGATTATTGATGGGAATCAAAATCCTTTTCATATGAAAAAAATTGATAAGACTAATG
2020 CA
66 CA
2022 T
1 T
2023 GGATTGAAAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
67 59 1.00
ACGTcount: A:0.40, C:0.07, G:0.16, T:0.36
Consensus pattern (67 bp):
TAATGCATAGATTATTGATGGGAATCAAAATCCTTTTCATATGAAAAAAATTGATAAGACTAATG
CA
Found at i:2213 original size:192 final size:191
Alignment explanation
Indices: 1783--2225 Score: 715
Period size: 193 Copynumber: 2.3 Consensus size: 191
1773 ATTGTCAATA
* * * * * * *
1783 GGAATTAGATTCTTTCTGATATGAAAAAAGTTGATTAGACTAATGTATGGATTGAAATTCGAAAA
1 GGAATTAGAATCTTTTTTATATGAAAAAA-TTGATAAGAGTAATGCATGGATTGAAATTAGAAAA
* * *
1848 ATGGCATTAATTTATGGATTTTGTTTGAAATAAATGTGATTAATGCATAGATTATTGATGGGAAT
65 ATGGCACTAATTTATGGATTTTGTTTGAAATAAATGTGATTAATGCATAGATTACTGATAGGAAT
* *
1913 TAAATTCCTTTTCATATGAAAGAAGTTGATAAGACTAATGCATAATGCATAGATTTTTTATG
130 TAAATTCCTTCTAATATGAAAGAAGTTGATAAGACTAATGCATAATGCATAGATTTTTTATG
* * *
1975 GGAATCAAAATCTTTTTTATATGAAAAAAATTGATAAGAGTAATGCATGGATTGAAATTAGAAAG
1 GGAATTAGAATCTTTTTTATATG-AAAAAATTGATAAGAGTAATGCATGGATTGAAATTAGAAAA
2040 ATGGCACTAATTTATGGATTTTGTTTTGAAATAAATGTGATTAATGCATAGATTACTGATAGGAA
65 ATGGCACTAATTTATGGATTTTG-TTTGAAATAAATGTGATTAATGCATAGATTACTGATAGGAA
2105 TTAAATTCCTTCTAATATGAAAGAAGTTGATAAGACTAATGCATAATGCATAGATTTTTTATG
129 TTAAATTCCTTCTAATATGAAAGAAGTTGATAAGACTAATGCATAATGCATAGATTTTTTATG
2168 GGAATTAGAATCTTTTTTATATGAAAAAATTGATAAGAGTAATGCATGGATTGTAAAT
1 GGAATTAGAATCTTTTTTATATGAAAAAATTGATAAGAGTAATGCATGGATTG-AAAT
2226 GTCAGACTAC
Statistics
Matches: 231, Mismatches: 17, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
192 100 0.43
193 131 0.57
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.37
Consensus pattern (191 bp):
GGAATTAGAATCTTTTTTATATGAAAAAATTGATAAGAGTAATGCATGGATTGAAATTAGAAAAA
TGGCACTAATTTATGGATTTTGTTTGAAATAAATGTGATTAATGCATAGATTACTGATAGGAATT
AAATTCCTTCTAATATGAAAGAAGTTGATAAGACTAATGCATAATGCATAGATTTTTTATG
Found at i:2382 original size:89 final size:91
Alignment explanation
Indices: 2216--2433 Score: 246
Period size: 89 Copynumber: 2.4 Consensus size: 91
2206 GTAATGCATG
* * *
2216 GATTGTAAATGTCAGACT-ACAAGAATTAGACTAATGCATGAATTGTACCTAAGAATCAGATGCC
1 GATTGTAAATGTCAGACTGA-AAGGATTAAACTAATGCATGAATTGTACATAAGAATCAGATGCC
*
2280 TTTTGT-AGGAAAAA-AAAAGTTGATT
65 TTTTGTAAGAAAAAAGAAAAGTTGATT
* * * * *
2305 GATTGTAAATGTCAAACTGAAAGGATTAAACTGATGCATGAATTGTATATGAGAATC-GAATTCT
1 GATTGTAAATGTCAGACTGAAAGGATTAAACTAATGCATGAATTGTACATAAGAATCAG-ATGC-
* *
2369 TTTTTGTAAAAAAAAAAGAAAAGTTGATT
64 CTTTTGT-AAGAAAAAAGAAAAGTTGATT
* * *
2398 GATTGTAAATGTTAGACTGCAAGGATTAGACTAATG
1 GATTGTAAATGTCAGACTGAAAGGATTAAACTAATG
2434 TATGGATTAT
Statistics
Matches: 107, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
88 1 0.01
89 51 0.48
90 7 0.07
92 6 0.06
93 42 0.39
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.31
Consensus pattern (91 bp):
GATTGTAAATGTCAGACTGAAAGGATTAAACTAATGCATGAATTGTACATAAGAATCAGATGCCT
TTTGTAAGAAAAAAGAAAAGTTGATT
Found at i:9365 original size:20 final size:20
Alignment explanation
Indices: 9310--9386 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 20
9300 GTAAAAAGAC
*
9310 AAAATGTATCAATA-AGTTGA
1 AAAATGTATCAATACA-TTCA
* **
9330 AGAATGTATCGTTACATTCA
1 AAAATGTATCAATACATTCA
* * *
9350 TACATGTATCAATACATTGA
1 AAAATGTATCAATACATTCA
*
9370 AAAATGTATCGATACAT
1 AAAATGTATCAATACAT
9387 CTGGGTACTT
Statistics
Matches: 43, Mismatches: 13, Indels: 2
0.74 0.22 0.03
Matches are distributed among these distances:
20 42 0.98
21 1 0.02
ACGTcount: A:0.43, C:0.12, G:0.13, T:0.32
Consensus pattern (20 bp):
AAAATGTATCAATACATTCA
Found at i:10358 original size:28 final size:28
Alignment explanation
Indices: 10285--10636 Score: 461
Period size: 28 Copynumber: 12.5 Consensus size: 28
10275 TACTAACTTA
*
10285 TGTGGGCTTTGAAAAGAGTGCCACTGACTT
1 TGTGGGCTTTG-AAAGGGTGCCACTGAC-T
* * *
10315 GTGTGGGCTTTGAAAGGGTTCCATTAACT
1 -TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10344 TATGGGCTTTGAAAGGATGTCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* **
10372 TGTGGGCTTTGAAAGGATGCCTTTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10400 TATGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * * *
10428 TGTGGGCTTTAAAAAGGTGCCACTAATT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
10456 TTTGGGCTTCGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10484 TGTGGGCTTTAAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
10512 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10540 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
10568 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
10596 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
10624 TATGGGCTTTGAA
1 TGTGGGCTTTGAA
10637 GAGATGAACG
Statistics
Matches: 280, Mismatches: 41, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
28 256 0.91
29 1 0.00
30 12 0.04
31 11 0.04
ACGTcount: A:0.22, C:0.16, G:0.31, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:11873 original size:23 final size:20
Alignment explanation
Indices: 11843--11893 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 20
11833 TCTGGACCCC
11843 TTTTTTGTTATTTTTTTCCTTGG
1 TTTTTTGTT-TTTTTTT--TTGG
*
11866 TTTTTTGTTTTTTTTTTTGT
1 TTTTTTGTTTTTTTTTTTGG
11886 TTTTTTGT
1 TTTTTTGT
11894 ATGAAGGACG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 11 0.41
22 7 0.26
23 9 0.33
ACGTcount: A:0.02, C:0.04, G:0.12, T:0.82
Consensus pattern (20 bp):
TTTTTTGTTTTTTTTTTTGG
Found at i:11881 original size:12 final size:12
Alignment explanation
Indices: 11866--11891 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
11856 TTTTCCTTGG
11866 TTTTTTGTTTTT
1 TTTTTTGTTTTT
11878 TTTTTTGTTTTT
1 TTTTTTGTTTTT
11890 TT
1 TT
11892 GTATGAAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:16201 original size:34 final size:35
Alignment explanation
Indices: 16163--16229 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
16153 CCTTACAACA
16163 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
16197 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
16230 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:16706 original size:13 final size:13
Alignment explanation
Indices: 16688--16713 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
16678 CAATTTTTTG
16688 TGTATCGATACAT
1 TGTATCGATACAT
16701 TGTATCGATACAT
1 TGTATCGATACAT
16714 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:16778 original size:21 final size:21
Alignment explanation
Indices: 16752--16827 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
16742 CTGCCAAGAA
16752 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
16773 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
16793 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
16814 ATGTATCGATACAT
1 ATGTATCGATACAT
16828 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:16797 original size:20 final size:20
Alignment explanation
Indices: 16772--16845 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
16762 ACATCTTTTT
16772 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
16792 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
16813 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
16833 CATGTATCGATAC
1 CATGTATCGATAC
16846 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:16809 original size:41 final size:41
Alignment explanation
Indices: 16752--16845 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
16742 CTGCCAAGAA
16752 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
16793 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
16834 ATGTATCGATAC
1 ATGTATCGATAC
16846 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:17506 original size:21 final size:21
Alignment explanation
Indices: 17465--17508 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
17455 CTCCCCTTTA
* *
17465 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
17486 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
17507 TC
1 TC
17509 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:18520 original size:13 final size:13
Alignment explanation
Indices: 18502--18526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
18492 ACTGAAGCAA
18502 TGTATCGATACAT
1 TGTATCGATACAT
18515 TGTATCGATACA
1 TGTATCGATACA
18527 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:21691 original size:34 final size:35
Alignment explanation
Indices: 21653--21719 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
21643 CCTTACAACA
21653 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
21687 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
21720 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:22196 original size:13 final size:13
Alignment explanation
Indices: 22178--22203 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22168 CAATTTTTTG
22178 TGTATCGATACAT
1 TGTATCGATACAT
22191 TGTATCGATACAT
1 TGTATCGATACAT
22204 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:22268 original size:21 final size:21
Alignment explanation
Indices: 22242--22317 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
22232 CTGCCAAGAA
22242 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
22263 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
22283 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
22304 ATGTATCGATACAT
1 ATGTATCGATACAT
22318 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:22287 original size:20 final size:20
Alignment explanation
Indices: 22262--22335 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
22252 ACATCTTTTT
22262 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
22282 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
22303 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
22323 CATGTATCGATAC
1 CATGTATCGATAC
22336 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:22299 original size:41 final size:41
Alignment explanation
Indices: 22242--22335 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
22232 CTGCCAAGAA
22242 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
22283 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
22324 ATGTATCGATAC
1 ATGTATCGATAC
22336 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:28364 original size:80 final size:79
Alignment explanation
Indices: 28092--28432 Score: 450
Period size: 79 Copynumber: 4.3 Consensus size: 79
28082 CCATTATTTC
* ** *
28092 ATCGGAGATACTCCAACCTTGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATATCCAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAAC
28157 ACCAATTTTTCACA
66 ACCAATTTTTCACA
* * *
28171 ATCGAGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCTAACCCCGATTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAAC
28236 ACCAATTTTTCACA
66 ACCAATTTTTCACA
* * * * *
28250 ATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGACACTCTAACCCCGATTTTATTTCCAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAAC
28315 ACCAATTTTTTCACA
66 ACCAA-TTTTTCACA
* * * **
28330 ATTGGGGATACTCCAACCCCATTATTTTC-AAGGGGATACTCCAACCCCGATTTTATTTTTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCGAA-GGGATACTCCAACCCCGATTTTATTTCCAAAA
** *
28394 CACTGATTTTTCATA
65 CACCAATTTTTCACA
* *
28409 GTCAGGGGATACTCCAGCCCCGTT
1 ATC-GGGGATACTCCAACCCCGTT
28433 GTCATCTCCA
Statistics
Matches: 231, Mismatches: 28, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
79 146 0.63
80 85 0.37
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATTTCCAAAAC
ACCAATTTTTCACA
Found at i:28393 original size:159 final size:158
Alignment explanation
Indices: 28092--28424 Score: 479
Period size: 159 Copynumber: 2.1 Consensus size: 158
28082 CCATTATTTC
* * *
28092 ATCGGAGATACTCCAACCTTGTTATTTCCGAAGGGATACTCCAACCCCGATTTTATATCCAAAAC
1 ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGGACACTCCAACCCCGATTTTATATCCAAAAC
* *
28157 ACCAATTTTTCACAATCGAGGATACTCCAACCCCGTTATTTCCGAAGGGATACTCTAACCCCGAT
66 ACCAATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAAGGGATACTCCAACCCCGAT
28222 TTTATTTCTAAAACACCAATTTTTCACA
131 TTTATTTCTAAAACACCAATTTTTCACA
* * * *
28250 ATCGGGGATACTCCAACCCTGTTATTTTCGAGGGGACACTCTAACCCCGATTTTATTTCCAAAAC
1 ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGGACACTCCAACCCCGATTTTATATCCAAAAC
* * *
28315 ACCAATTTTTTCACAATTGGGGATACTCCAACCCCATTATTTTC-AAGGGGATACTCCAACCCCG
66 ACCAA-TTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAA-GGGATACTCCAACCCCG
* ** *
28379 ATTTTATTTTTAAAACACTGATTTTTCATA
129 ATTTTATTTCTAAAACACCAATTTTTCACA
*
28409 GTCAGGGGATACTCCA
1 ATC-GGGGATACTCCA
28425 GCCCCGTTGT
Statistics
Matches: 155, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
158 65 0.42
159 78 0.50
160 12 0.08
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (158 bp):
ATCGGGGATACTCCAACCCTGTTATTTCCGAAGGGACACTCCAACCCCGATTTTATATCCAAAAC
ACCAATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCGAAGGGATACTCCAACCCCGAT
TTTATTTCTAAAACACCAATTTTTCACA
Found at i:31683 original size:98 final size:97
Alignment explanation
Indices: 31514--31759 Score: 262
Period size: 98 Copynumber: 2.5 Consensus size: 97
31504 TAAGGGCTAG
** * *
31514 AGTATCCCCTC-GAAGGAATAGGG-TTGGAGTATCCCTGACGATGATAATTTAAACAAAGATAAG
1 AGTATCCCCTCGGAA-GAAT-GGGATTGGAGTATCCCCAATGAGGA-AATTTAAACAAAGATAAG
* *
31577 AATTAAATCTTGATAAGTTTTAAAAATGAGGTTAA
63 AATTAAATCTTGATAAATTTTAAAAACGAGGTTAA
* **
31612 AGTATCCCCTCGGAAGAATGGGATTGGAGTATCCCCAATAGAGGAAATTTAAACAAAGTTAAGGT
1 AGTATCCCCTCGGAAGAATGGGATTGGAGTATCCCCAAT-GAGGAAATTTAAACAAAGATAAGAA
* **
31677 TTAAATCTTGATAAATTTTAAAAACGGGGTTGG
65 TTAAATCTTGATAAATTTTAAAAACGAGGTTAA
* * * * * * *
31710 AGTATCCCTTCGAAAAAATGGAATTGAAATATCCTCAATGAAGGAAATTT
1 AGTATCCCCTCGGAAGAATGGGATTGGAGTATCCCCAATG-AGGAAATTT
31760 TTGACGTTTT
Statistics
Matches: 125, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
97 4 0.03
98 114 0.91
99 7 0.06
ACGTcount: A:0.39, C:0.12, G:0.21, T:0.28
Consensus pattern (97 bp):
AGTATCCCCTCGGAAGAATGGGATTGGAGTATCCCCAATGAGGAAATTTAAACAAAGATAAGAAT
TAAATCTTGATAAATTTTAAAAACGAGGTTAA
Found at i:33088 original size:13 final size:14
Alignment explanation
Indices: 33062--33094 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
33052 CTAGCATGCT
33062 AAAATTTCCATAGC
1 AAAATTTCCATAGC
33076 AAAATTT-CATAGC
1 AAAATTTCCATAGC
33089 ATAAAT
1 A-AAAT
33095 CATAACAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (14 bp):
AAAATTTCCATAGC
Found at i:34182 original size:22 final size:20
Alignment explanation
Indices: 34154--34205 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
34144 ATGAGAAATT
34154 TATCGATACAATT-TTAAGCGTG
1 TATCGATACAATTATTAA---TG
*
34176 TATCGATACATTTATTAATG
1 TATCGATACAATTATTAATG
34196 TATCGATACA
1 TATCGATACA
34206 TTTCCTTAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
20 12 0.43
22 12 0.43
23 4 0.14
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.38
Consensus pattern (20 bp):
TATCGATACAATTATTAATG
Found at i:38718 original size:174 final size:173
Alignment explanation
Indices: 38421--38760 Score: 556
Period size: 174 Copynumber: 2.0 Consensus size: 173
38411 ATAGCTCACT
* * * * *
38421 TTAAAACATAAACACTGAAATTAGAGCATTCAAATAGCTCATGTTGTGGAATTTCTTTCTTGACT
1 TTAAAACATAAACACTGAAAATAGAGCATTCAAACAGCTCATGTTGTGAAATTTCTTTCCTAACT
**
38486 CATCTGACCATAAAAACAAACTTTCTAAACTTTATTTCAAAACATGTCTTATGGGTATAGTAGTA
66 CATCTGACCATAAAAACAAACTTTCTAAACTTTATTTCAAAACATGTCCAATGGGTATAGTAGTA
38551 AAAATACTAAAAAAATCATCTTCATAGACAAAAATAGATGCTA
131 AAAATACTAAAAAAATCATCTTCATAGACAAAAATAGATGCTA
*
38594 TTAAAACATAAACACTGAAAATAGAGCATTCAAACAGCTCATGTTGTGAAATTTTTTTCCCTAAC
1 TTAAAACATAAACACTGAAAATAGAGCATTCAAACAGCTCATGTTGTGAAATTTCTTT-CCTAAC
*
38659 TCATCTGACCACT-AAAACAAACTTTCTAAACTTTATTTCAAAACCTGTCCAATGGGTATAGTAG
65 TCATCTGACCA-TAAAAACAAACTTTCTAAACTTTATTTCAAAACATGTCCAATGGGTATAGTAG
* *
38723 TAAAAATACTAAAAAAATCATCTTTATAGGCAAAAATA
129 TAAAAATACTAAAAAAATCATCTTCATAGACAAAAATA
38761 ATTCTTTTTT
Statistics
Matches: 154, Mismatches: 11, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
173 54 0.35
174 99 0.64
175 1 0.01
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (173 bp):
TTAAAACATAAACACTGAAAATAGAGCATTCAAACAGCTCATGTTGTGAAATTTCTTTCCTAACT
CATCTGACCATAAAAACAAACTTTCTAAACTTTATTTCAAAACATGTCCAATGGGTATAGTAGTA
AAAATACTAAAAAAATCATCTTCATAGACAAAAATAGATGCTA
Found at i:39409 original size:59 final size:59
Alignment explanation
Indices: 39314--39460 Score: 156
Period size: 59 Copynumber: 2.5 Consensus size: 59
39304 AAATGTTAAA
* * * *
39314 AAGTCAATGTTTAGGTTTCTAGTTTTATCTAAGCCATTTCT-TTTAGTCTTAGTTCT-GCC
1 AAGTC-ATTTTTAAGTTTCTAGTTTTGTCTAAGCCATTT-TATTCAGTCTTAGTTCTAGCC
** *
39373 TAAGTCATTTTTCAAG-TTCTAGTTTTGTCTGGGCCATTTTATTCAGTCTTAGTTCTATCC
1 -AAGTCATTTTT-AAGTTTCTAGTTTTGTCTAAGCCATTTTATTCAGTCTTAGTTCTAGCC
* *
39433 AAGTCATTTTTAGGTTTCTAGTTCTGTC
1 AAGTCATTTTTAAGTTTCTAGTTTTGTC
39461 CAGGTTGTTT
Statistics
Matches: 74, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
58 3 0.04
59 62 0.84
60 9 0.12
ACGTcount: A:0.19, C:0.17, G:0.16, T:0.48
Consensus pattern (59 bp):
AAGTCATTTTTAAGTTTCTAGTTTTGTCTAAGCCATTTTATTCAGTCTTAGTTCTAGCC
Found at i:39795 original size:60 final size:59
Alignment explanation
Indices: 39640--39844 Score: 221
Period size: 60 Copynumber: 3.4 Consensus size: 59
39630 GATTTCGTCC
* * * * * *
39640 AAGCCATTTCTTTGAATCTTGGTTCCACCTAAGTTATTGTCTAGATTTTTTGTTCTATTT
1 AAGCCATTTCATTGAGTCTTGGTTCCGCCCAAGTTATTGTCTAGA-TTTTTGTTTTATCT
* *
39700 AAGCCATTTCATTAAGTCTTGGTTCCGCCCAAGTTATTGCCTAGATTTTTAGTTTTATCT
1 AAGCCATTTCATTGAGTCTTGGTTCCGCCCAAGTTATTGTCTAGATTTTT-GTTTTATCT
** * * * * * *
39760 AAGCCATTTCATTGAGTCTTGGTTTTGCTCGAGTTATTGTTTAGGTTTTTGATTTCATCC
1 AAGCCATTTCATTGAGTCTTGGTTCCGCCCAAGTTATTGTCTAGATTTTTG-TTTTATCT
* *
39820 ATGCCATTTCTTTGAGTCTTGGTTC
1 AAGCCATTTCATTGAGTCTTGGTTC
39845 TATCCAAGTT
Statistics
Matches: 122, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
59 6 0.05
60 116 0.95
ACGTcount: A:0.19, C:0.18, G:0.17, T:0.47
Consensus pattern (59 bp):
AAGCCATTTCATTGAGTCTTGGTTCCGCCCAAGTTATTGTCTAGATTTTTGTTTTATCT
Found at i:40267 original size:29 final size:30
Alignment explanation
Indices: 40096--40331 Score: 97
Period size: 30 Copynumber: 7.9 Consensus size: 30
40086 TCATTTAAGA
* * * *
40096 TTAGTAATCATTTT-AACTAAAGATTTCACC
1 TTAGTCATC-TTTTCAACTGAAGGTTTCGCC
* * * *
40126 CTAGTCATCGTTTCGACTGAAGGTTTCACC
1 TTAGTCATCTTTTCAACTGAAGGTTTCGCC
* * ** ** *
40156 CTAATTGTCTTTTTGACTGAAGGTTTTGCC
1 TTAGTCATCTTTTCAACTGAAGGTTTCGCC
* * * * * * * **
40186 TTGGTTACCTTTTTAATTTAAAGTTTTACC
1 TTAGTCATCTTTTCAACTGAAGGTTTCGCC
* * *
40216 TTGGTCATCGTTTT-GACTAAAGGTTTCGCC
1 TTAGTCATC-TTTTCAACTGAAGGTTTCGCC
** *
40246 TTAG-CATCTTTTCAGTTGAAGGTTTTG-C
1 TTAGTCATCTTTTCAACTGAAGGTTTCGCC
* *
40274 TATAGTCAT-TATTTTAACTGAAGGTTTCACC
1 T-TAGTCATCT-TTTCAACTGAAGGTTTCGCC
40305 TTAGTCATCTTTTCAACT-AACGGTTTC
1 TTAGTCATCTTTTCAACTGAA-GGTTTC
40332 ACACGGTCAC
Statistics
Matches: 154, Mismatches: 43, Indels: 18
0.72 0.20 0.08
Matches are distributed among these distances:
28 6 0.04
29 22 0.14
30 119 0.77
31 7 0.05
ACGTcount: A:0.23, C:0.18, G:0.16, T:0.43
Consensus pattern (30 bp):
TTAGTCATCTTTTCAACTGAAGGTTTCGCC
Found at i:40794 original size:20 final size:20
Alignment explanation
Indices: 40771--40809 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
40761 TACATATCAA
40771 AATGAATCAATACAATACAC
1 AATGAATCAATACAATACAC
* *
40791 AATGTATCGATACAATACA
1 AATGAATCAATACAATACA
40810 TAACGTAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.51, C:0.18, G:0.08, T:0.23
Consensus pattern (20 bp):
AATGAATCAATACAATACAC
Found at i:40925 original size:20 final size:20
Alignment explanation
Indices: 40864--40939 Score: 66
Period size: 20 Copynumber: 3.9 Consensus size: 20
40854 AACCTGTATT
* * *
40864 TGTATTGATACATGTTAAAA
1 TGTATCGATACATCTAAAAA
* * *
40884 TGTATCAATACA-ATACATAA
1 TGTATCGATACATCTA-AAAA
40904 TGTATCGATACATCTAAAAA
1 TGTATCGATACATCTAAAAA
*
40924 TGTATTGATAC-TCTAA
1 TGTATCGATACATCTAA
40940 GCTACAATGG
Statistics
Matches: 45, Mismatches: 9, Indels: 5
0.76 0.15 0.08
Matches are distributed among these distances:
19 6 0.13
20 37 0.82
21 2 0.04
ACGTcount: A:0.42, C:0.12, G:0.11, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATCTAAAAA
Found at i:43871 original size:18 final size:18
Alignment explanation
Indices: 43848--43882 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43838 AATTTTCACC
43848 AAAAAAACAAAAAAATAA
1 AAAAAAACAAAAAAATAA
* *
43866 AAAAAAAGAACAAAATA
1 AAAAAAACAAAAAAATA
43883 TGGCATTTAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.86, C:0.06, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAAACAAAAAAATAA
Found at i:49440 original size:12 final size:12
Alignment explanation
Indices: 49424--49463 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
49414 AATATTTTTT
*
49424 AAAAAATTATTA
1 AAAAAATGATTA
*
49436 TAAAAATGATTA
1 AAAAAATGATTA
*
49448 AAAAAATGATGA
1 AAAAAATGATTA
49460 AAAA
1 AAAA
49464 TATATATATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.07, T:0.25
Consensus pattern (12 bp):
AAAAAATGATTA
Found at i:51584 original size:2 final size:2
Alignment explanation
Indices: 51577--51612 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
51567 TCGGGTTTCT
*
51577 TA TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
51613 AAATATTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:53316 original size:18 final size:18
Alignment explanation
Indices: 53293--53328 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
53283 TCCAATTTGG
53293 TGGATGATATAAGCTTGA
1 TGGATGATATAAGCTTGA
53311 TGGATGATATAAGCTTGA
1 TGGATGATATAAGCTTGA
53329 ATTATTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.06, G:0.28, T:0.33
Consensus pattern (18 bp):
TGGATGATATAAGCTTGA
Found at i:53378 original size:15 final size:16
Alignment explanation
Indices: 53346--53378 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
53336 GAATTTTAAT
53346 AAGTTTTAAAAGTTCA
1 AAGTTTTAAAAGTTCA
*
53362 AAGTTTTTAAA-TTCA
1 AAGTTTTAAAAGTTCA
53377 AA
1 AA
53379 TTCAATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (16 bp):
AAGTTTTAAAAGTTCA
Found at i:57152 original size:46 final size:46
Alignment explanation
Indices: 57085--57175 Score: 182
Period size: 46 Copynumber: 2.0 Consensus size: 46
57075 GAACAACTAA
57085 CAGAATGGAGAGAGAAGAATTGGAATTCTCATTAGATTCTCAATGT
1 CAGAATGGAGAGAGAAGAATTGGAATTCTCATTAGATTCTCAATGT
57131 CAGAATGGAGAGAGAAGAATTGGAATTCTCATTAGATTCTCAATG
1 CAGAATGGAGAGAGAAGAATTGGAATTCTCATTAGATTCTCAATG
57176 CTTGGTACAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.27
Consensus pattern (46 bp):
CAGAATGGAGAGAGAAGAATTGGAATTCTCATTAGATTCTCAATGT
Found at i:60649 original size:2 final size:2
Alignment explanation
Indices: 60642--60678 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
60632 TAATTAGAAG
60642 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
60679 CATACACACA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:61789 original size:23 final size:23
Alignment explanation
Indices: 61759--61824 Score: 132
Period size: 23 Copynumber: 2.9 Consensus size: 23
61749 GAAAAACGCA
61759 TTCATGTCAAGTTGCAAATGTCT
1 TTCATGTCAAGTTGCAAATGTCT
61782 TTCATGTCAAGTTGCAAATGTCT
1 TTCATGTCAAGTTGCAAATGTCT
61805 TTCATGTCAAGTTGCAAATG
1 TTCATGTCAAGTTGCAAATG
61825 CAAATCTATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 43 1.00
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.38
Consensus pattern (23 bp):
TTCATGTCAAGTTGCAAATGTCT
Found at i:64061 original size:35 final size:35
Alignment explanation
Indices: 64022--64096 Score: 105
Period size: 35 Copynumber: 2.1 Consensus size: 35
64012 TACATTAATT
*
64022 TTATTCCCAAAATTCCTCTACCAAACACCAATCAA
1 TTATTCCCAAAAGTCCTCTACCAAACACCAATCAA
* * * *
64057 TTATTCCTAAAAGTCCTCTACTAATCACCAATTAA
1 TTATTCCCAAAAGTCCTCTACCAAACACCAATCAA
64092 TTATT
1 TTATT
64097 TATAGAAATC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.37, C:0.28, G:0.01, T:0.33
Consensus pattern (35 bp):
TTATTCCCAAAAGTCCTCTACCAAACACCAATCAA
Found at i:64109 original size:35 final size:35
Alignment explanation
Indices: 64030--64114 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
64020 TTTTATTCCC
* *
64030 AAAATTCCTCTACCAAACACCAATCAATTATTCCT
1 AAAAGTCCTCTACCAAACACCAATCAATTATTCAT
* * * *
64065 AAAAGTCCTCTACTAATCACCAATTAATTATTTAT
1 AAAAGTCCTCTACCAAACACCAATCAATTATTCAT
64100 AGAAA-TCCTCTACCA
1 A-AAAGTCCTCTACCA
64115 TCTTTATGCC
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
35 39 0.93
36 3 0.07
ACGTcount: A:0.40, C:0.27, G:0.02, T:0.31
Consensus pattern (35 bp):
AAAAGTCCTCTACCAAACACCAATCAATTATTCAT
Found at i:65683 original size:20 final size:22
Alignment explanation
Indices: 65644--65683 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
65634 AACGTACAAT
*
65644 ACAAAGACTCTATCAGGAGAGG
1 ACAAAGAATCTATCAGGAGAGG
65666 ACAAAGAATC-AT-AGGAGA
1 ACAAAGAATCTATCAGGAGA
65684 CAATGGTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 2 0.12
22 9 0.53
ACGTcount: A:0.47, C:0.15, G:0.25, T:0.12
Consensus pattern (22 bp):
ACAAAGAATCTATCAGGAGAGG
Found at i:71656 original size:165 final size:166
Alignment explanation
Indices: 71316--72051 Score: 832
Period size: 166 Copynumber: 4.5 Consensus size: 166
71306 AAGAGAATTT
* * * * * * *
71316 AAAATTCATGAAATTAATTGAATTTATT-AAAACTGATTTAATG-GAGTTTAATAACAATATTAG
1 AAAACTCATGAAAATAAATGAATTT-TTGAAAACTGATTTAATGTGAATTAAATAATAATATTTG
** * * * ** * *
71379 ATGAATTTTAAAAATT-TTACCCGAGAAAAATCCTCCCGAAAATATTTATTGAATAGAAAAC-TC
65 ATGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCGAAAACATTTACGGAGTAAAAAACTTC
* * **
71442 GATTTTTTGGAAATAAGAAAATTTCAAAGAAAAATTTC
130 G-TATTTTGGAAATAAAAAAATTTCAAAGAAAAAAATC
*
71480 AAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAACGTGAATTAAATAATAATATTTGA
1 AAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATGTGAATTAAATAATAATATTTGA
* * *
71545 TGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCTCGAGAACATTTATGGAGTAAAAAACTTCG
66 TGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCGAAAACATTTACGGAGTAAAAAACTTCG
* *
71610 TATTTCGAAAATAAAAAAATTTCAAAGAAAAAAAT-
131 TATTTTGGAAATAAAAAAATTTCAAAGAAAAAAATC
* * *
71645 AAAACTCATGAAAATGAATGAATTTTTGAAAAATGATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATGTGAATTAAATAATAATATTTGA
* * *
71710 TGAATTTTAAAAATTAAAAACCAAGAAAAATTCCT-CCGAAAATATTTACGGAGTAGAAAACTCC
66 TGAATTTTAAAAATTAAAAACCAAGAAAAA-TCCTCCCGAAAACATTTACGGAGTAAAAAACTTC
* *
71774 GTATTTTGGAAATAAGAAAATTTC-AAGAAAAAAATGA
130 GTATTTTGGAAATAAAAAAATTTCAAAGAAAAAAAT-C
* ** * * *
71811 AAAACTCATGACAAGGAGTGACTTTTTGAAAACTGATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATGTGAATTAAATAATAATATTTGA
*
71876 TGAATTTTAAAAATTAAAAACCAAGAAAAATCC-CCCTGAAAACATTTACGGAGTAAAAAACTTT
66 TGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCC-GAAAACATTTACGGAGTAAAAAACTTC
* * ** * *
71940 GTATTTTGCAAATATGAGGAA-TTCCAA-AAGAAAATC
130 GTATTTTGGAAATA-AAAAAATTTCAAAGAAAAAAATC
* * * *
71976 AATAACTCAT-AAAATAAAAGGAATTTTTCAAAACTAATTTAATGATG-ATTAAATGATAATATT
1 AA-AACTCATGAAAAT-AAATGAATTTTTGAAAACTGATTTAATG-TGAATTAAATAATAATATT
72039 TAGA-GAATTTTAA
63 T-GATGAATTTTAA
72052 TGTTCAAAAC
Statistics
Matches: 494, Mismatches: 63, Indels: 28
0.84 0.11 0.05
Matches are distributed among these distances:
163 2 0.00
164 47 0.10
165 177 0.36
166 257 0.52
167 11 0.02
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.31
Consensus pattern (166 bp):
AAAACTCATGAAAATAAATGAATTTTTGAAAACTGATTTAATGTGAATTAAATAATAATATTTGA
TGAATTTTAAAAATTAAAAACCAAGAAAAATCCTCCCGAAAACATTTACGGAGTAAAAAACTTCG
TATTTTGGAAATAAAAAAATTTCAAAGAAAAAAATC
Found at i:72072 original size:331 final size:330
Alignment explanation
Indices: 71365--72051 Score: 879
Period size: 331 Copynumber: 2.1 Consensus size: 330
71355 AATGGAGTTT
* * ** * * *
71365 AATAACAATATTAGATGAATTTTAAAAATT-TTACCCGAGAAAAA-TCCTCCCGAAAATATTTAT
1 AATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCCT-CCGAAAATATTTAC
* * * **
71428 TGAATAGAAAACTCGATTTTTTGGAAATAAGAAAATTTCAAAGAAAAATTTCAAAACTCATGAAA
65 GGAATAGAAAACTCGATATTTTGGAAATAAGAAAATTTCAAAGAAAAAATGAAAAACTCATGAAA
* *
71493 ATAAATGAATTTTTGAAAACTGATTTAACGTGAATTAAATAATAATATTTGATGAATTTTAAAAA
130 AGAAATGAATTTTTGAAAACTGATTTAACATGAATTAAATAATAATATTTGATGAATTTTAAAAA
* * *
71558 TTAAAAACCAAGAAAAATCCTCTCGAGAACATTTATGGAGTAAAAAACTTCGTATTTCGAAAATA
195 TTAAAAACCAAGAAAAATCCCCTCGAAAACATTTACGGAGTAAAAAACTTCGTATTTCGAAAATA
* * * * *
71623 AAAAAATTTCAAAGAAAAAAATAAAACTCATGAAAATGAATGAATTTTTGAAAAATGATTTAATA
260 AAAAAATTCCAAAGAAAAAAAT-AAACTCATGAAAATAAAGGAATTTTTCAAAAATAATTTAATA
71688 TGAATTA
324 TGAATTA
71695 AATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCCTCCGAAAATATTTACG
1 AATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCCTCCGAAAATATTTACG
* *
71760 GAGTAGAAAACTCCG-TATTTTGGAAATAAGAAAATTTC-AAGAAAAAAATGAAAAACTCATGAC
66 GAATAGAAAACT-CGATATTTTGGAAATAAGAAAATTTCAAAG-AAAAAATGAAAAACTCATGAA
* * * *
71823 AAGGAGTGACTTTTTGAAAACTGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAA
129 AAGAAATGAATTTTTGAAAACTGATTTAACATGAATTAAATAATAATATTTGATGAATTTTAAAA
* * *
71888 ATTAAAAACCAAGAAAAATCCCC-CTGAAAACATTTACGGAGTAAAAAACTTTGTATTTTGCAAA
194 ATTAAAAACCAAGAAAAATCCCCTC-GAAAACATTTACGGAGTAAAAAACTTCGTATTTCGAAAA
* ** * *
71952 TATGAGGAATTCCAAAAGAAAATCAAT-AACTCAT-AAAATAAAAGGAATTTTTCAAAACTAATT
258 TA-AAAAAATTCC-AAAGAAAA-AAATAAACTCATGAAAAT-AAAGGAATTTTTCAAAAATAATT
72015 TAATGATG-ATTA
319 TAAT-ATGAATTA
*
72027 AATGATAATATTTAGA-GAATTTTAA
1 AATAATAATATTT-GATGAATTTTAA
72052 TGTTCAAAAC
Statistics
Matches: 309, Mismatches: 37, Indels: 20
0.84 0.10 0.05
Matches are distributed among these distances:
330 32 0.10
331 195 0.63
332 66 0.21
333 13 0.04
334 3 0.01
ACGTcount: A:0.49, C:0.09, G:0.11, T:0.30
Consensus pattern (330 bp):
AATAATAATATTTGATGAATTTTAAAAATTAAAAACCAAGAAAAATTCCTCCGAAAATATTTACG
GAATAGAAAACTCGATATTTTGGAAATAAGAAAATTTCAAAGAAAAAATGAAAAACTCATGAAAA
GAAATGAATTTTTGAAAACTGATTTAACATGAATTAAATAATAATATTTGATGAATTTTAAAAAT
TAAAAACCAAGAAAAATCCCCTCGAAAACATTTACGGAGTAAAAAACTTCGTATTTCGAAAATAA
AAAAATTCCAAAGAAAAAAATAAACTCATGAAAATAAAGGAATTTTTCAAAAATAATTTAATATG
AATTA
Found at i:75196 original size:31 final size:28
Alignment explanation
Indices: 75161--75226 Score: 89
Period size: 27 Copynumber: 2.3 Consensus size: 28
75151 ATTAGTAGCA
*
75161 CTCAAGTATTAGTGTTGCATCAGTTAGCAAT
1 CTCAAGT-TT-GT-TTGCATCAATTAGCAAT
75192 CTCAAG-TTGTTTGCATCAATTAGCAAT
1 CTCAAGTTTGTTTGCATCAATTAGCAAT
75219 CTCAAGTT
1 CTCAAGTT
75227 GTTGCGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
27 22 0.67
28 3 0.09
29 2 0.06
31 6 0.18
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (28 bp):
CTCAAGTTTGTTTGCATCAATTAGCAAT
Found at i:75206 original size:27 final size:27
Alignment explanation
Indices: 75175--75229 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
75165 AGTATTAGTG
*
75175 TTGCATCAGTTAGCAATCTCAAGTTGT
1 TTGCATCAATTAGCAATCTCAAGTTGT
75202 TTGCATCAATTAGCAATCTCAAGTTGT
1 TTGCATCAATTAGCAATCTCAAGTTGT
75229 T
1 T
75230 GCGCTACTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.27, C:0.18, G:0.16, T:0.38
Consensus pattern (27 bp):
TTGCATCAATTAGCAATCTCAAGTTGT
Found at i:78169 original size:16 final size:16
Alignment explanation
Indices: 78135--78174 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
78125 TTTAATAAGT
* *
78135 ATTTGAATTACAATGTA
1 ATTT-AATTAAAATATA
78152 ATTTAATTAAAATATA
1 ATTTAATTAAAATATA
78168 ATTTAAT
1 ATTTAAT
78175 AGTAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 17 0.81
17 4 0.19
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (16 bp):
ATTTAATTAAAATATA
Found at i:78193 original size:21 final size:22
Alignment explanation
Indices: 78154--78205 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
78144 ACAATGTAAT
78154 TTAATTAAAATATAATTTAATAG
1 TTAATTAAAATATAATTTAA-AG
**
78177 -TAATTAAAAT-TTTTTTAAAG
1 TTAATTAAAATATAATTTAAAG
78197 TTAATTAAA
1 TTAATTAAA
78206 TTATCATCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 2 0.08
21 14 0.54
22 10 0.38
ACGTcount: A:0.50, C:0.00, G:0.04, T:0.46
Consensus pattern (22 bp):
TTAATTAAAATATAATTTAAAG
Found at i:79646 original size:97 final size:97
Alignment explanation
Indices: 79466--79648 Score: 232
Period size: 97 Copynumber: 1.9 Consensus size: 97
79456 TGAAAATGAG
* *
79466 ATTTAAATCTTGACGAATTTAAAAGCGAGGTTGGAGTATCCTCTCGGAAGAATAGAGTTAGAGTA
1 ATTTAAATCTTGACGAATTTAAAAGCGAGGTTGAAGTATCCTCTCGAAAGAATAGAGTTAGAGTA
*
79531 TCCTCGACGATGATAATTTGAGCAAAAATAAT
66 TCCTCGACGATGAAAATTTGAGCAAAAATAAT
* *
79563 ATTTAAATCTTGA-GAAGTTTAAAAGCG-GGATT-AATGTATCCTCTCGAAAGAAT-GGGATTGG
1 ATTTAAATCTTGACGAA-TTTAAAAGCGAGG-TTGAA-GTATCCTCTCGAAAGAATAGAG-TTAG
*
79624 AGTATCCTCGATGGAT-AAAATTTGA
62 AGTATCCTCGA-CGATGAAAATTTGA
79649 TAATTTTTTT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
96 8 0.11
97 64 0.85
98 3 0.04
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.30
Consensus pattern (97 bp):
ATTTAAATCTTGACGAATTTAAAAGCGAGGTTGAAGTATCCTCTCGAAAGAATAGAGTTAGAGTA
TCCTCGACGATGAAAATTTGAGCAAAAATAAT
Found at i:81302 original size:19 final size:19
Alignment explanation
Indices: 81278--81329 Score: 70
Period size: 19 Copynumber: 2.8 Consensus size: 19
81268 ACAATAAATA
81278 TATCGATACATAAGCCATG
1 TATCGATACATAAGCCATG
***
81297 TATCGATACATAAGTTTTG
1 TATCGATACATAAGCCATG
81316 TATCGATACA-AAGC
1 TATCGATACATAAGC
81330 TGCCCAGCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
18 3 0.10
19 26 0.90
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (19 bp):
TATCGATACATAAGCCATG
Found at i:81376 original size:20 final size:20
Alignment explanation
Indices: 81351--81388 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
81341 CTGCTAAGGA
81351 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
81371 AATGTATCGATACATTAT
1 AATGTATCGATACATTAT
81389 ATCGATACAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:85671 original size:32 final size:32
Alignment explanation
Indices: 85589--85673 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 32
85579 GATACATTGA
* *
85589 AGAATGTATCGATACATTTTGATCAAAAACTT
1 AGAATGTATCGATACATTTGGATCAAAAACCT
*
85621 AGAATTTATTGTATCGATACATTTGGGTCAAAAACCT
1 AG-A---A-TGTATCGATACATTTGGATCAAAAACCT
85658 AGAATGTATCGATACA
1 AGAATGTATCGATACA
85674 ATGAAAAATG
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
32 14 0.31
33 2 0.04
36 2 0.04
37 27 0.60
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (32 bp):
AGAATGTATCGATACATTTGGATCAAAAACCT
Found at i:85725 original size:50 final size:50
Alignment explanation
Indices: 85630--85745 Score: 180
Period size: 50 Copynumber: 2.3 Consensus size: 50
85620 TAGAATTTAT
* * *
85630 TGTATCGATACATTTGGGTCAAAAACCTAGAATGTATCGATACAATGAAAAA
1 TGTATCGATACATTTGGATC-AAAACCCAGAATGTATCGACACAAT-AAAAA
85682 TGTATCGATACATTTGGATC-AAACCCAGAATGTATCGACACAATAAAAA
1 TGTATCGATACATTTGGATCAAAACCCAGAATGTATCGACACAATAAAAA
85731 TGTATCGATACATTT
1 TGTATCGATACATTT
85746 TCTTTCCAGA
Statistics
Matches: 61, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
49 20 0.33
50 22 0.36
52 19 0.31
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.28
Consensus pattern (50 bp):
TGTATCGATACATTTGGATCAAAACCCAGAATGTATCGACACAATAAAAA
Found at i:86852 original size:30 final size:27
Alignment explanation
Indices: 86817--86890 Score: 80
Period size: 26 Copynumber: 2.6 Consensus size: 27
86807 ATGATTTACG
86817 TAAATAAATAATAAAATATGATAATTAAAT
1 TAAATAAATAATAAAATAT-ATAA--AAAT
*
86847 TAAATAAAT-ATAAATTATATAAAAAT
1 TAAATAAATAATAAAATATATAAAAAT
86873 TATAA-AAATATATAAAAT
1 TA-AATAAATA-ATAAAAT
86891 TAATTTATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
26 10 0.26
27 2 0.05
28 10 0.26
29 8 0.21
30 9 0.23
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (27 bp):
TAAATAAATAATAAAATATATAAAAAT
Found at i:86869 original size:19 final size:19
Alignment explanation
Indices: 86847--86889 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
86837 ATAATTAAAT
*
86847 TAAATAAATAT-AAATTATA
1 TAAA-AAATATAAAAATATA
*
86866 TAAAAATTATAAAAATATA
1 TAAAAAATATAAAAATATA
86885 TAAAA
1 TAAAA
86890 TTAATTTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAAAAATATAAAAATATA
Found at i:86872 original size:26 final size:28
Alignment explanation
Indices: 86817--86890 Score: 80
Period size: 28 Copynumber: 2.6 Consensus size: 28
86807 ATGATTTACG
86817 TAAATAAATAATAAAATATGATAATTAAAT
1 TAAATAAAT-ATAAAATATGATAA-TAAAT
*
86847 TAAATAAATATAAATTAT-ATAA-AAAT
1 TAAATAAATATAAAATATGATAATAAAT
*
86873 TATAAAAATATATAAAAT
1 TA-AATAA-ATATAAAAT
86891 TAATTTATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
26 6 0.15
27 4 0.10
28 12 0.31
29 8 0.21
30 9 0.23
ACGTcount: A:0.65, C:0.00, G:0.01, T:0.34
Consensus pattern (28 bp):
TAAATAAATATAAAATATGATAATAAAT
Found at i:86874 original size:11 final size:10
Alignment explanation
Indices: 86848--86889 Score: 50
Period size: 10 Copynumber: 4.2 Consensus size: 10
86838 TAATTAAATT
*
86848 AAATAAATATA
1 AAATATATA-A
*
86859 AATTATATAA
1 AAATATATAA
86869 AAAT-TATAA
1 AAATATATAA
86878 AAATATATAA
1 AAATATATAA
86888 AA
1 AA
86890 TTAATTTATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
9 9 0.33
10 11 0.41
11 7 0.26
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAATATATAA
Found at i:89573 original size:5 final size:5
Alignment explanation
Indices: 89563--89601 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
89553 ATCTCAATTA
*
89563 ATTTT ATTTT ATTTT ATTTT A-TTT ATTTC ATATTT ATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT ATTTT AT-TTT ATTT
89602 AATTCTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
4 4 0.13
5 22 0.73
6 4 0.13
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (5 bp):
ATTTT
Found at i:90341 original size:3 final size:3
Alignment explanation
Indices: 90333--90376 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
90323 AAAGTGTTGG
90333 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
90377 TTTGTGTAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:91074 original size:29 final size:29
Alignment explanation
Indices: 91032--91206 Score: 188
Period size: 29 Copynumber: 5.9 Consensus size: 29
91022 AACTTTTTTT
*
91032 TTTATTTTTTTGCAATTTAATTTATGCAA
1 TTTATTTTCTTGCAATTTAATTTATGCAA
* * *
91061 TTTACTCTCTTGCAATTTTATTTATGCAA
1 TTTATTTTCTTGCAATTTAATTTATGCAA
** *
91090 TAAATTTCCTTGCAATTTAATTTATGCAA
1 TTTATTTTCTTGCAATTTAATTTATGCAA
* * * *
91119 TTTTTTTATTTTTGCAATTTGATTTAAGCAA
1 -TTTATT-TTCTTGCAATTTAATTTATGCAA
* *
91150 TTTATTATCTTGCAATTTTAATTTATGTAA
1 TTTATTTTCTTGCAA-TTTAATTTATGCAA
91180 TTTATTTTCTTGCAAATTTAAATTTAT
1 TTTATTTTCTTGC-AATTT-AATTTAT
91207 TCACTTTACA
Statistics
Matches: 117, Mismatches: 24, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
29 55 0.47
30 34 0.29
31 28 0.24
ACGTcount: A:0.29, C:0.10, G:0.07, T:0.55
Consensus pattern (29 bp):
TTTATTTTCTTGCAATTTAATTTATGCAA
Found at i:91134 original size:89 final size:93
Alignment explanation
Indices: 91028--91206 Score: 249
Period size: 89 Copynumber: 2.0 Consensus size: 93
91018 TTTCAACTTT
* *
91028 TTTTTTTATTTTTTTGCAATTTAATTTATGCAATTTACTCTCTTGCAATTTT-ATTTATGCAATA
1 TTTTTTTA-TTTTTTGCAATTTAATTTAAGCAATTTACTATCTTGCAATTTTAATTTATGCAATA
91092 AATTTCCTTGC-AATTT-AATTTATGCAA
65 AATTTCCTTGCAAATTTAAATTTATGCAA
* * * **
91119 TTTTTTTA-TTTTTGCAATTTGATTTAAGCAATTTATTATCTTGCAATTTTAATTTATGTAATTT
1 TTTTTTTATTTTTTGCAATTTAATTTAAGCAATTTACTATCTTGCAATTTTAATTTATGCAATAA
*
91183 ATTTTCTTGCAAATTTAAATTTAT
66 ATTTCCTTGCAAATTTAAATTTAT
91207 TCACTTTACA
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
89 38 0.49
90 19 0.25
91 13 0.17
92 7 0.09
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.56
Consensus pattern (93 bp):
TTTTTTTATTTTTTGCAATTTAATTTAAGCAATTTACTATCTTGCAATTTTAATTTATGCAATAA
ATTTCCTTGCAAATTTAAATTTATGCAA
Found at i:91198 original size:60 final size:57
Alignment explanation
Indices: 91032--91194 Score: 182
Period size: 60 Copynumber: 2.8 Consensus size: 57
91022 AACTTTTTTT
* * * * *
91032 TTTATTTTTTTGCAATTTAATTTATGCAATTTACTCTCTTGCAATTTTATTTATGCAA
1 TTTA-TTTCTTGCAATTTAATTTATGCAATTTATTTTCTTGCAATTTGATTTAAGCAA
** * *
91090 TAAATTTCCTTGCAATTTAATTTATGCAATTTTTTTATTTTTGCAATTTGATTTAAGCAA
1 TTTATTT-CTTGCAATTTAATTTATGCAA-TTTATT-TTCTTGCAATTTGATTTAAGCAA
*
91150 TTTATTATCTTGCAATTTTAATTTATGTAATTTATTTTCTTGCAA
1 TTTATT-TCTTGCAA-TTTAATTTATGCAATTTATTTTCTTGCAA
91195 ATTTAAATTT
Statistics
Matches: 86, Mismatches: 14, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
57 3 0.03
58 22 0.26
59 12 0.14
60 35 0.41
61 14 0.16
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (57 bp):
TTTATTTCTTGCAATTTAATTTATGCAATTTATTTTCTTGCAATTTGATTTAAGCAA
Found at i:91334 original size:2 final size:2
Alignment explanation
Indices: 91329--91366 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
91319 ATATATGTTC
*
91329 TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
91367 ACAACTAATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:91537 original size:5 final size:5
Alignment explanation
Indices: 91527--91554 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
91517 ATTTGTTTTA
91527 ATTTC ATTTC ATTTC ATTTC ATTTC ATT
1 ATTTC ATTTC ATTTC ATTTC ATTTC ATT
91555 ATTTTTTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTC
Found at i:92431 original size:20 final size:20
Alignment explanation
Indices: 92377--92433 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
92367 AAAACCCTTA
**
92377 AAAGTATCGATACACAATTC
1 AAAGTATCGATACATGATTC
*
92397 AAAGTATCGATACATGTTTC
1 AAAGTATCGATACATGATTC
*
92417 AATGTATCGATACATGA
1 AAAGTATCGATACATGA
92434 AAAAGATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAGTATCGATACATGATTC
Found at i:92509 original size:13 final size:13
Alignment explanation
Indices: 92491--92516 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
92481 TACAGCAAGT
92491 ATGTATCGATACA
1 ATGTATCGATACA
92504 ATGTATCGATACA
1 ATGTATCGATACA
92517 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:98205 original size:12 final size:12
Alignment explanation
Indices: 98188--98212 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
98178 ACAAATTCAT
98188 ACGTATGTGGGG
1 ACGTATGTGGGG
98200 ACGTATGTGGGG
1 ACGTATGTGGGG
98212 A
1 A
98213 AGATTCGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.20, C:0.08, G:0.48, T:0.24
Consensus pattern (12 bp):
ACGTATGTGGGG
Found at i:98465 original size:19 final size:19
Alignment explanation
Indices: 98426--98509 Score: 108
Period size: 19 Copynumber: 4.7 Consensus size: 19
98416 TTTCAACGAT
98426 TTGTATCGATACATAAAGTG
1 TTGTATCGATACAT-AAGTG
98446 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
98465 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
*
98479 -TGTATCGATACATAAGTT
1 TTGTATCGATACATAAGTG
98497 TTGTATCGATACA
1 TTGTATCGATACA
98510 ATAGAAGCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
13 11 0.19
15 2 0.03
17 2 0.03
19 29 0.50
20 14 0.24
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:98484 original size:13 final size:13
Alignment explanation
Indices: 98466--98490 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98456 ACATAAGTGT
98466 TGTATCGATACAA
1 TGTATCGATACAA
98479 TGTATCGATACA
1 TGTATCGATACA
98491 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:98488 original size:32 final size:32
Alignment explanation
Indices: 98447--98511 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
98437 CATAAAGTGT
98447 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
98479 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
98511 T
1 T
98512 AGAAGCTACT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.12, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:98570 original size:13 final size:13
Alignment explanation
Indices: 98552--98576 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98542 ATTACTCAAA
98552 TGTATCGATACAT
1 TGTATCGATACAT
98565 TGTATCGATACA
1 TGTATCGATACA
98577 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:101295 original size:13 final size:13
Alignment explanation
Indices: 101277--101302 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
101267 TACAACAAGT
101277 ATGTATCGATACA
1 ATGTATCGATACA
101290 ATGTATCGATACA
1 ATGTATCGATACA
101303 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:103553 original size:21 final size:21
Alignment explanation
Indices: 103520--103564 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
103510 TTGCAAGTTG
*
103520 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
103542 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
103562 AAA
1 AAA
103565 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:105389 original size:15 final size:15
Alignment explanation
Indices: 105369--105399 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
105359 TAAAAATGTC
*
105369 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
105384 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
105399 C
1 C
105400 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:107496 original size:20 final size:21
Alignment explanation
Indices: 107417--107495 Score: 72
Period size: 20 Copynumber: 3.7 Consensus size: 21
107407 AATGTCCAAA
*
107417 ATGTATCGATACATGTTTT-T
1 ATGTATCGATACATCTTTTCT
* *
107437 GTGTATCGATACATCTGGAAATTCT
1 ATGTATCGATACATCT----TTTCT
107462 ATGTATCGATACAT-TTTTCT
1 ATGTATCGATACATCTTTTCT
*
107482 TTGTATCGATACAT
1 ATGTATCGATACAT
107496 TGTATCGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
24 3 0.06
25 14 0.29
ACGTcount: A:0.27, C:0.14, G:0.15, T:0.44
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTCT
Found at i:107500 original size:13 final size:13
Alignment explanation
Indices: 107482--107520 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
107472 ACATTTTTCT
107482 TTGTATCGATACA
1 TTGTATCGATACA
107495 TTGTATCGATACA
1 TTGTATCGATACA
*
107508 CTGTATCGATACA
1 TTGTATCGATACA
107521 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:107665 original size:21 final size:21
Alignment explanation
Indices: 107641--107687 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
107631 AAATCTTTTG
107641 CAAAAT-ACTT-GTTTTTCACTT
1 CAAAATAACTTCGTTTTTCA--T
107662 C-AAATAACTTCGTTTTTCAT
1 CAAAATAACTTCGTTTTTCAT
107682 CAAAAT
1 CAAAAT
107688 CAGCATCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
20 6 0.26
21 9 0.39
22 8 0.35
ACGTcount: A:0.34, C:0.19, G:0.04, T:0.43
Consensus pattern (21 bp):
CAAAATAACTTCGTTTTTCAT
Found at i:107684 original size:20 final size:19
Alignment explanation
Indices: 107643--107685 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
107633 ATCTTTTGCA
107643 AAATACTTGTTTTTCACTTC
1 AAATACTTGTTTTTCAC-TC
107663 AAATAACTTCGTTTTTCA-TC
1 AAAT-ACTT-GTTTTTCACTC
107683 AAA
1 AAA
107686 ATCAGCATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 9 0.43
21 4 0.19
22 8 0.38
ACGTcount: A:0.33, C:0.19, G:0.05, T:0.44
Consensus pattern (19 bp):
AAATACTTGTTTTTCACTC
Found at i:109944 original size:20 final size:20
Alignment explanation
Indices: 109890--109946 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
109880 AAAACCCTTA
**
109890 AAAGTATCGATACACAATTC
1 AAAGTATCGATACATGATTC
*
109910 AAAGTATCGATACATGTTTC
1 AAAGTATCGATACATGATTC
*
109930 AATGTATCGATACATGA
1 AAAGTATCGATACATGA
109947 AAAAGATGTA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (20 bp):
AAAGTATCGATACATGATTC
Found at i:110022 original size:13 final size:13
Alignment explanation
Indices: 110004--110029 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
109994 TACAGCAAGT
110004 ATGTATCGATACA
1 ATGTATCGATACA
110017 ATGTATCGATACA
1 ATGTATCGATACA
110030 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:116147 original size:34 final size:33
Alignment explanation
Indices: 116104--116740 Score: 658
Period size: 34 Copynumber: 19.8 Consensus size: 33
116094 ATCTCTTTCC
*
116104 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
*
116138 TAAGTCCACAACTCCGTGGCA-C-----CCTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
* * *
116165 TAAGCCCATAATTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
* * *
116199 TAAGTCCACAACTCTGTGGCA-C-----CCGTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
*
116226 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
* * *
116260 TAAGTCCAGAACTCCGTGGCACCTTTTTCTTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
116293 TAAAGCCCACAACTCCGTGGCACCTTTTT-CTTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTT
* *
116326 TCATAGCCCACCACTCCGTGGCA-CTTTTTCTTTT
1 T-A-AGCCCACAACTCCGTGGCACCTTTTTCCTTT
*
116360 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTT
116394 TAAAGCCCACAACTCCGTGGCACCTTTTT-CTTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTT
* *
116427 TCAAAGCCCACCACTCCGTGGCA-CTTTTTCTTTT
1 T--AAGCCCACAACTCCGTGGCACCTTTTTCCTTT
*
116461 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTT
* *
116495 TAAAGCCCACAACTCTGTGGCACCCTTTTTCCTTC
1 T-AAGCCCACAACTCCGTGGCA-CCTTTTTCCTTT
* *
116530 TAAGTCCACAACCCCGTGGCA-C-----CCTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
*
116557 TAAGCGCACAACTCCGTGGCA-C-----CCTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
116584 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
116618 TAAGCCCACAACTCCGTGGCA-C-----CCTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
116645 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
* *
116679 TAAGTCCACAACTCCGTGGCACTCTTTTTCCTTC
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTT
*
116713 TAAGTCCACAACTCCGTGGCACCTTTTT
1 TAAGCCCACAACTCCGTGGCACCTTTTT
116741 TTTTTTAAAG
Statistics
Matches: 522, Mismatches: 45, Indels: 73
0.82 0.07 0.11
Matches are distributed among these distances:
27 118 0.23
29 4 0.01
32 4 0.01
33 75 0.14
34 310 0.59
35 11 0.02
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.32
Consensus pattern (33 bp):
TAAGCCCACAACTCCGTGGCACCTTTTTCCTTT
Found at i:116163 original size:27 final size:27
Alignment explanation
Indices: 116133--116247 Score: 97
Period size: 27 Copynumber: 4.0 Consensus size: 27
116123 CACTCTTTTT
*
116133 CCTTCTAAGTCCACAACTCCGTGGCAC
1 CCTTCTAAGCCCACAACTCCGTGGCAC
* * *
116160 CCTTTTAAGCCCATAATTCCGTGGCACTC
1 CCTTCTAAGCCCACAACTCCGTGGCA--C
* *
116189 TTTTTCCTTCTAAGTCCACAACTCTGTGGCAC
1 -----CCTTCTAAGCCCACAACTCCGTGGCAC
116221 CCGTT-TAAGCCCACAACTCCGTGGCAC
1 CC-TTCTAAGCCCACAACTCCGTGGCAC
116248 TCTTTTTCCT
Statistics
Matches: 69, Mismatches: 11, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
27 44 0.64
28 2 0.03
29 1 0.01
32 1 0.01
34 21 0.30
ACGTcount: A:0.21, C:0.37, G:0.15, T:0.28
Consensus pattern (27 bp):
CCTTCTAAGCCCACAACTCCGTGGCAC
Found at i:116189 original size:61 final size:60
Alignment explanation
Indices: 116104--116740 Score: 501
Period size: 61 Copynumber: 10.0 Consensus size: 60
116094 ATCTCTTTCC
*
116104 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCCTTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTT
* * * * *
116165 TAAGCCCATAATTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCCGTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTT
* *
116226 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCAGAACTCCGTGGCACCTTTTTCTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTCTAAGCCCACAACTCCGTGGCACC-----C-T
116291 TT
59 TT
* * *
116293 TAAAGCCCACAACTCCGTGGCACCTTTTT-CTTTTCATAGCCCACCACTCCGTGGCACTTTTTCT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTCT-A-AGCCCACAACTCCGTGGCAC-----CC
116357 TTT
58 TTT
* *
116360 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACC-----CT
116425 TT
59 TT
* * *
116427 TCAAAGCCCACCACTCCGTGGCA-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
1 T--AAGCCCACAACTCCGTGGCACCTTTTTCCTTCT-AAGCCCACAACTCCGTGGCACC-----C
116491 TTTT
58 -TTT
* * *
116495 TAAAGCCCACAACTCTGTGGCACCCTTTTTCCTTCTAAGTCCACAACCCCGTGGCACCCTTT
1 T-AAGCCCACAACTCCGTGGCA-CCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTT
* *
116557 TAAGCGCACAACTCCGTGGCA-C-----CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTCTAAGCCCACAACTCCGTGGCA--C-----CCT
116616 TT
59 TT
*
116618 TAAGCCCACAACTCCGTGGCA-C-----CCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 TAAGCCCACAACTCCGTGGCACCTTTTTCCTTCTAAGCCCACAACTCCGTGGCA--C-----CCT
116677 TT
59 TT
* * *
116679 TAAGTCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCCGTGGCACCTTTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTT
116740 T
1 T
116741 TTTTTTAAAG
Statistics
Matches: 503, Mismatches: 35, Indels: 76
0.82 0.06 0.12
Matches are distributed among these distances:
54 23 0.05
56 1 0.00
59 1 0.00
61 218 0.43
62 5 0.01
63 2 0.00
66 6 0.01
67 125 0.25
68 111 0.22
69 10 0.02
73 1 0.00
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.32
Consensus pattern (60 bp):
TAAGCCCACAACTCCGTGGCACCTTTTTCCTTCTAAGCCCACAACTCCGTGGCACCCTTT
Found at i:116359 original size:67 final size:68
Alignment explanation
Indices: 116227--116752 Score: 574
Period size: 67 Copynumber: 8.1 Consensus size: 68
116217 GCACCCGTTT
* * *
116227 AAGCCCACAACTCCGTGGCACTCTTTTTC-CTTC-TAAGTCCAGAACTCCGTGGCACCTTTTTCT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCAT-AGCCCACAACTCCGTGGCACCTTTTTCT
116290 TTTTA
64 TTTTA
*
116295 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACCACTCCGTGGCA-CTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCACCTTTTTCTTT
116359 TTA
66 TTA
* *
116362 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCACCTTTTTCTTT
*
116427 TCA
66 TTA
* * *
116430 AAGCCCACCACTCCGTGGCA-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCACCTTTTTCTTT
116494 TTA
66 TTA
* * * *
116497 AAGCCCACAACTCTGTGGCACCCTTTTTC-CTTC-TAAGTCCACAACCCCGTGGCACC-----C-
1 AAGCCCACAACTCCGTGGCA-CCTTTTTCTTTTCAT-AGCCCACAACTCCGTGGCACCTTTTTCT
116554 TTTT-
64 TTTTA
* *
116558 AAGCGCACAACTCCGTGGCACC-----CTTTT-A-AGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCAC-CTTTTTCTT
116616 TTT-
65 TTTA
*
116619 AAGCCCACAACTCCGTGGCACC-----CTTTT-A-AGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCAC-CTTTTTCTT
116677 TTT-
65 TTTA
* * * *
116680 AAGTCCACAACTCCGTGGCACTCTTTTTC-CTTC-TAAGTCCACAACTCCGTGGCACCTTTTTTT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCAT-AGCCCACAACTCCGTGGCACCTTTTTCT
116743 TTTTA
64 TTTTA
116748 AAGCC
1 AAGCC
116753 TACACAAGTT
Statistics
Matches: 404, Mismatches: 29, Indels: 50
0.84 0.06 0.10
Matches are distributed among these distances:
54 18 0.04
55 2 0.00
56 2 0.00
60 3 0.01
61 102 0.25
62 5 0.01
63 1 0.00
66 2 0.00
67 146 0.36
68 115 0.28
69 8 0.02
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.33
Consensus pattern (68 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACAACTCCGTGGCACCTTTTTCTTT
TTA
Found at i:116392 original size:101 final size:98
Alignment explanation
Indices: 116104--116740 Score: 627
Period size: 101 Copynumber: 6.6 Consensus size: 98
116094 ATCTCTTTCC
* *
116104 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTC-TAAGTCCACAACTCCGTGGCAC-----CCT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTCAT-AGCCCACAACTCCGTGGCACTTTTTCCT
* * * *
116163 TTTAAGCCCATAATTCCGTGGCACTCTTTTTCCTTC
64 TTTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTT
* *
116199 TAAGTCCACAACTCTGTGGCACC-----CGTTT-A-AGCCCACAACTCCGTGGCACTCTTTTTCC
1 TAAGCCCACAACTCCGTGGCACCTTTTTC-TTTCATAGCCCACAACTCCGTGGCA--CTTTTTCC
* * *
116257 TTCTAAGTCCAGAACTCCGTGGCACCTTTTTCTTTT
63 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* *
116293 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCATAGCCCACCACTCCGTGGCACTTTTTCTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTC-TTTCATAGCCCACAACTCCGTGGCACTTTTTCCT
116358 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
64 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * *
116394 TAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACTTTTTCTT
1 T-AAGCCCACAACTCCGTGGCACCTTTTTC-TTTCATAGCCCACAACTCCGTGGCACTTTTTCCT
116459 TTTAAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
64 TTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTT
* * * *
116495 TAAAGCCCACAACTCTGTGGCACCCTTTTTCCTTC-TAAGTCCACAACCCCGTGGCAC-----CC
1 T-AAGCCCACAACTCCGTGGCA-CCTTTTTCTTTCAT-AGCCCACAACTCCGTGGCACTTTTTCC
*
116554 TTTTAAGCGCACAACTCCGTGGCACC-----C-TTT
63 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
*
116584 TAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTA-AGCCCACAACTCCGTGGCAC-----CCT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTCATAGCCCACAACTCCGTGGCACTTTTTCCT
*
116643 TTTAAGCCCACAACTCCGTGGCACTCTTTTTCCTTT
64 TTTAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTT
* * *
116679 TAAGTCCACAACTCCGTGGCACTCTTTTTCCTTC-TAAGTCCACAACTCCGTGGCACCTTTTT
1 TAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTCAT-AGCCCACAACTCCGTGGCA-CTTTTT
116741 TTTTTTAAAG
Statistics
Matches: 467, Mismatches: 37, Indels: 70
0.81 0.06 0.12
Matches are distributed among these distances:
87 1 0.00
88 87 0.19
89 9 0.02
90 4 0.01
94 15 0.03
95 133 0.28
96 6 0.01
100 14 0.03
101 172 0.37
102 26 0.06
ACGTcount: A:0.19, C:0.35, G:0.13, T:0.32
Consensus pattern (98 bp):
TAAGCCCACAACTCCGTGGCACCTTTTTCTTTCATAGCCCACAACTCCGTGGCACTTTTTCCTTT
TAAGCCCACAACTCCGTGGCACCTTTTTCTTTT
Found at i:116555 original size:27 final size:27
Alignment explanation
Indices: 116525--116672 Score: 188
Period size: 27 Copynumber: 5.2 Consensus size: 27
116515 CACCCTTTTT
* * *
116525 CCTTCTAAGTCCACAACCCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
116552 CCTTTTAAGCGCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
116579 CCTTTTAAGCCCACAACTCCGTGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
116608 TTTTTCCTTTTAAGCCCACAACTCCGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
116640 CCTTTTAAGCCCACAACTCCGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
116667 TCTTTT
1 CCTTTT
116673 TCCTTTTAAG
Statistics
Matches: 108, Mismatches: 6, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
27 80 0.74
29 1 0.01
32 1 0.01
34 26 0.24
ACGTcount: A:0.20, C:0.39, G:0.14, T:0.27
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:116818 original size:32 final size:34
Alignment explanation
Indices: 116746--116870 Score: 137
Period size: 32 Copynumber: 3.7 Consensus size: 34
116736 TTTTTTTTTT
* * *
116746 TAAAGCCTACACAAGTTGGGGGCAATCCCTTCTC
1 TAAAGCCCACACAAGTTGGTGGCAATCCCTCCTC
116780 TAAAGCCCACACAAGTTGGTGGCAA-CCC-CCTC
1 TAAAGCCCACACAAGTTGGTGGCAATCCCTCCTC
* * * *
116812 TAAAGCCCACACAAGTCGGTGGCAATATCTTCTTC
1 TAAAGCCCACACAAGTTGGTGGCAAT-CCCTCCTC
* * *
116847 AAAAGCTCACATAAGTTGGTGGCA
1 TAAAGCCCACACAAGTTGGTGGCA
116871 TCTTCCTTTA
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
32 27 0.35
33 3 0.04
34 24 0.31
35 23 0.30
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (34 bp):
TAAAGCCCACACAAGTTGGTGGCAATCCCTCCTC
Found at i:116836 original size:66 final size:67
Alignment explanation
Indices: 116746--116870 Score: 171
Period size: 66 Copynumber: 1.9 Consensus size: 67
116736 TTTTTTTTTT
* * * *
116746 TAAAGCCTACACAAGTTGGGGGCAATCCCTTC-TCTAAAGCCCACACAAGTTGGTGGCAACCCCC
1 TAAAGCCCACACAAGTCGGGGGCAATACCTTCTTCAAAAGCCCACACAAGTTGGTGGCAACCCCC
116810 TC
66 TC
* * * *
116812 TAAAGCCCACACAAGTCGGTGGCAATATCTTCTTCAAAAGCTCACATAAGTTGGTGGCA
1 TAAAGCCCACACAAGTCGGGGGCAATACCTTCTTCAAAAGCCCACACAAGTTGGTGGCA
116871 TCTTCCTTTA
Statistics
Matches: 50, Mismatches: 8, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
66 27 0.54
67 23 0.46
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.22
Consensus pattern (67 bp):
TAAAGCCCACACAAGTCGGGGGCAATACCTTCTTCAAAAGCCCACACAAGTTGGTGGCAACCCCC
TC
Found at i:116930 original size:49 final size:48
Alignment explanation
Indices: 116876--117326 Score: 548
Period size: 49 Copynumber: 9.7 Consensus size: 48
116866 TGGCATCTTC
116876 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCAT
* *
116925 CTTTAAGTCCAATGTAGCTGGCCTTGAA-CAGCACATTGGCA---C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCAT
*
116967 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCAT
* *
117016 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCAT
117059 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCAT
* * *
117108 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCAAATTAGCA---C--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCAT
*
117151 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-TCAT
* *
117200 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTC--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCAT
* *
117246 C---AAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CCTCAT
* * * *
117292 CTTTTAAGCCCAATGTCGCTAGCCTTGAATCAGCA
1 C-TTTAAGTCCAATATAGCTGGCCTTGAATCAGCA
117327 AACCAGGAAG
Statistics
Matches: 350, Mismatches: 26, Indels: 51
0.82 0.06 0.12
Matches are distributed among these distances:
42 26 0.07
43 124 0.35
44 5 0.01
45 2 0.01
46 2 0.01
47 3 0.01
48 14 0.04
49 146 0.42
50 28 0.08
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTCAT
Found at i:117106 original size:92 final size:92
Alignment explanation
Indices: 116875--117326 Score: 780
Period size: 92 Copynumber: 4.9 Consensus size: 92
116865 GTGGCATCTT
*
116875 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
116940 AGCTGGCCTTGAA-CAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
116966 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
117031 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
117058 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
* *
117123 AGCTGGCCTTGAATCAGCAAATTAGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
*
117150 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCATCATCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
117215 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
** * * *
117242 CCTCCAAGTCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCCTCATCTTTTAAGCCCAATG
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATC-TTTAAGTCCAATG
* *
117307 TCGCTAGCCTTGAATCAGCA
65 TAGCTGGCCTTGAATCAGCA
117327 AACCAGGAAG
Statistics
Matches: 344, Mismatches: 15, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
91 77 0.22
92 237 0.69
93 30 0.09
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:119472 original size:19 final size:20
Alignment explanation
Indices: 119433--119484 Score: 97
Period size: 19 Copynumber: 2.6 Consensus size: 20
119423 TTTCAACGAT
119433 TTGTATCGATACATAAAGTG
1 TTGTATCGATACATAAAGTG
119453 TTGTATCGATACAT-AAGTG
1 TTGTATCGATACATAAAGTG
119472 TTGTATCGATACA
1 TTGTATCGATACA
119485 ATGTATCGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATAAAGTG
Found at i:119491 original size:13 final size:13
Alignment explanation
Indices: 119473--119510 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
119463 ACATAAGTGT
119473 TGTATCGATACAA
1 TGTATCGATACAA
119486 TGTATCGATACAA
1 TGTATCGATACAA
*
119499 TCTATCGATACA
1 TGTATCGATACA
119511 TAAGTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:123633 original size:12 final size:12
Alignment explanation
Indices: 123616--123668 Score: 51
Period size: 12 Copynumber: 4.7 Consensus size: 12
123606 TTTACTATCT
123616 CTCCTATCTCTC
1 CTCCTATCTCTC
123628 CTCCTATCATC-C
1 CTCCTATC-TCTC
*
123640 CT-C-ATATCT-
1 CTCCTATCTCTC
*
123649 CTACTATCTCTC
1 CTCCTATCTCTC
123661 CTCCTATC
1 CTCCTATC
123669 ATCGCTCTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 10
0.72 0.07 0.22
Matches are distributed among these distances:
9 4 0.12
10 3 0.09
11 6 0.18
12 18 0.55
13 2 0.06
ACGTcount: A:0.15, C:0.45, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:123656 original size:33 final size:33
Alignment explanation
Indices: 123611--123692 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
123601 ATATCTTTAC
*
123611 TATCTCTCCTATCTCTCCTCCTATCATCCCTCA
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCA
* *
123644 TATCTCTACTATCTCTCCTCCTATCATCGCTCT
1 TATCTCTACTATCTCTCCTCCTATCATCCCTCA
* *
123677 TATCTCTTCTTTCTCT
1 TATCTCTACTATCTCT
123693 TTGAGGGCTA
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 44 1.00
ACGTcount: A:0.13, C:0.40, G:0.01, T:0.45
Consensus pattern (33 bp):
TATCTCTACTATCTCTCCTCCTATCATCCCTCA
Found at i:124411 original size:20 final size:20
Alignment explanation
Indices: 124386--124427 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
124376 CAAATCCTAG
124386 TTTTTTCCTCTTTTTTTGTA
1 TTTTTTCCTCTTTTTTTGTA
* *
124406 TTTTTTCTTTTTTTTTTGTA
1 TTTTTTCCTCTTTTTTTGTA
124426 TT
1 TT
124428 CTTGAAAACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (20 bp):
TTTTTTCCTCTTTTTTTGTA
Found at i:126284 original size:26 final size:26
Alignment explanation
Indices: 126255--126314 Score: 102
Period size: 26 Copynumber: 2.3 Consensus size: 26
126245 CAAAACATCA
*
126255 TCATATCTAACAAAATGAATACTAGC
1 TCATATCCAACAAAATGAATACTAGC
*
126281 TCATATCCAACACAATGAATACTAGC
1 TCATATCCAACAAAATGAATACTAGC
126307 TCATATCC
1 TCATATCC
126315 TTGCATGGCA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.42, C:0.25, G:0.07, T:0.27
Consensus pattern (26 bp):
TCATATCCAACAAAATGAATACTAGC
Found at i:126520 original size:16 final size:16
Alignment explanation
Indices: 126484--126520 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
126474 AAATTTTTTG
* *
126484 AAAAATATATTTGTAA
1 AAAAATAAATTTGAAA
126500 AAAAATAAATTTGAAA
1 AAAAATAAATTTGAAA
126516 AAAAA
1 AAAAA
126521 ATGAGTGGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (16 bp):
AAAAATAAATTTGAAA
Found at i:131003 original size:13 final size:13
Alignment explanation
Indices: 130985--131036 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
130975 AGCTTCGTAG
130985 CGATACATTGTAT
1 CGATACATTGTAT
130998 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
131017 CGATACATTGTAT
1 CGATACATTGTAT
131030 CGATACA
1 CGATACA
131037 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:131017 original size:19 final size:19
Alignment explanation
Indices: 130993--131057 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
130983 AGCGATACAT
130993 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
131012 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
131025 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
131044 TGTATCGATACAAA
1 TGTATCGATACAAA
131058 TTGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:131026 original size:32 final size:32
Alignment explanation
Indices: 130985--131055 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
130975 AGCTTCGTAG
130985 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
131017 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
131049 CGATACA
1 CGATACA
131056 AATTGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:132115 original size:20 final size:19
Alignment explanation
Indices: 132061--132115 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
132051 GCAACCAGAG
*
132061 AAGAAAAAAGATAAAAAAGA
1 AAGAAAAAAGA-AAAAAAAA
* *
132081 AACAAAAATACAAAAAAAAA
1 AAGAAAAA-AGAAAAAAAAA
132101 AAGAAAACAAGAAAA
1 AAGAAAA-AAGAAAA
132116 GTTTATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
20 25 0.89
21 3 0.11
ACGTcount: A:0.82, C:0.05, G:0.09, T:0.04
Consensus pattern (19 bp):
AAGAAAAAAGAAAAAAAAA
Found at i:138929 original size:13 final size:13
Alignment explanation
Indices: 138911--138935 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
138901 CATAAAGTGT
138911 TGTATCGATACAA
1 TGTATCGATACAA
138924 TGTATCGATACA
1 TGTATCGATACA
138936 TTTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:139016 original size:13 final size:13
Alignment explanation
Indices: 138998--139025 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
138988 ATTACTCAAA
138998 TGTATCGATACAT
1 TGTATCGATACAT
139011 TGTATCGATACAT
1 TGTATCGATACAT
139024 TG
1 TG
139026 ATCTTTGTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:139076 original size:52 final size:52
Alignment explanation
Indices: 139031--139150 Score: 213
Period size: 52 Copynumber: 2.3 Consensus size: 52
139021 CATTGATCTT
*
139031 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATTGATACATTATAAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
* *
139083 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
139135 TGTATCGATACATGCA
1 TGTATCGATACATGCA
139151 AGCAACTTTT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
Found at i:141262 original size:24 final size:26
Alignment explanation
Indices: 141235--141285 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 26
141225 CAAAAATTTT
141235 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
141259 ATTCATCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
141286 GTTTTCAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 6 0.25
25 1 0.04
27 17 0.71
ACGTcount: A:0.25, C:0.41, G:0.18, T:0.16
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:143618 original size:22 final size:22
Alignment explanation
Indices: 143588--143644 Score: 87
Period size: 24 Copynumber: 2.5 Consensus size: 22
143578 ACAAAAGTCA
143588 AAAAAAAAAAAAAAAAGAGAGAGT
1 AAAAAAAAAAAAAAAA-AG-GAGT
*
143612 AAAAAAAAAAAAAAAAAGGTGT
1 AAAAAAAAAAAAAAAAAGGAGT
143634 AAAAAAAAAAA
1 AAAAAAAAAAA
143645 GGGTGCAAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
22 14 0.44
23 2 0.06
24 16 0.50
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.05
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAAAGGAGT
Found at i:143637 original size:17 final size:17
Alignment explanation
Indices: 143617--143649 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
143607 AGAGTAAAAA
143617 AAAAAAAAAAAAGGTGT
1 AAAAAAAAAAAAGGTGT
*
143634 AAAAAAAAAAAGGGTG
1 AAAAAAAAAAAAGGTG
143650 CAAAGGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.21, T:0.09
Consensus pattern (17 bp):
AAAAAAAAAAAAGGTGT
Found at i:145005 original size:31 final size:31
Alignment explanation
Indices: 144967--145111 Score: 181
Period size: 31 Copynumber: 4.7 Consensus size: 31
144957 AAATAAAAAA
*
144967 AAAGTCCACAACTCAGTGGCAATCTCTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
144998 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
*
145029 AAAGTCCACGACGCAGTGGC-ATC-CTTCTC
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTC
* *
145058 TTTAAAGTCCACAACTCAGTGGCATAT-T-GTCTC
1 ---AAAGTCCACGACTCAGTGGCA-ATCTCTTCTC
145091 AAAGTCCACGACTCAGTGGCA
1 AAAGTCCACGACTCAGTGGCA
145112 TTTTTTCTTT
Statistics
Matches: 100, Mismatches: 8, Indels: 13
0.83 0.07 0.11
Matches are distributed among these distances:
29 5 0.05
30 23 0.23
31 48 0.48
32 18 0.18
33 4 0.04
34 2 0.02
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTC
Found at i:145033 original size:62 final size:61
Alignment explanation
Indices: 144967--145135 Score: 191
Period size: 62 Copynumber: 2.7 Consensus size: 61
144957 AAATAAAAAA
* * *
144967 AAAGTCCACAACTCAGTGGCAATCTCTTCTC-AAAGTCCACGACTCAGTGGCA-ATCTCTGCTC
1 AAAGTCCACGACTCAGTGGCAATC-CTTCTCTAAAGTCCACAACTCAGTGGCATAT-TGT-CTC
*
145029 AAAGTCCACGACGCAGTGGC-ATCCTTCTCTTTAAAGTCCACAACTCAGTGGCATATTGTCTC
1 AAAGTCCACGACTCAGTGGCAATCCTTCTC--TAAAGTCCACAACTCAGTGGCATATTGTCTC
* ** * *
145091 AAAGTCCACGACTCAGTGGCATTTTTTCTTTAAAGCCCACAACTC
1 AAAGTCCACGACTCAGTGGCAATCCTTCTCTAAAGTCCACAACTC
145136 CATGGCACCT
Statistics
Matches: 92, Mismatches: 10, Indels: 11
0.81 0.09 0.10
Matches are distributed among these distances:
60 6 0.07
61 17 0.18
62 40 0.43
63 27 0.29
64 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.16, T:0.27
Consensus pattern (61 bp):
AAAGTCCACGACTCAGTGGCAATCCTTCTCTAAAGTCCACAACTCAGTGGCATATTGTCTC
Found at i:145157 original size:34 final size:33
Alignment explanation
Indices: 145119--145438 Score: 294
Period size: 34 Copynumber: 9.8 Consensus size: 33
145109 GCATTTTTTC
*
145119 TTTAAAGCCCACAACTCCATGGCACCTTGTTCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTT-TTCCT
* *
145153 TTT-AAGTCCACAACGCCGTGGCA-C----CCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTTTCCT
* * *
145180 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCAT
1 TTTAAAGCCCACAACTCCGTGGCAC-CTTTTCCT
* *
145214 CTTT-AAGTCCACAACTCCGTGGCA-C----CCG
1 -TTTAAAGCCCACAACTCCGTGGCACCTTTTCCT
145242 TTT-AAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTTAAAGCCCACAACTCCGTGGCACCTT-TTCCT
*
145274 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-AT
1 TTT-AAAGCCCACAACTCCGTGGCACCTT-TTCCT
145308 TTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CT
1 TTT-AAAGCCCACAACTCCGTGGCACCTT-TTCCT
**
145342 TTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 TTTAAAGCCCACAACTCCGTGGCAC-C--TTTTCCT
*
145378 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTTTCCT
* *
145412 TTTAAAGCCCATAACTCTGTGGCACCT
1 TTTAAAGCCCACAACTCCGTGGCACCT
145439 ACAACTTTGT
Statistics
Matches: 241, Mismatches: 24, Indels: 43
0.78 0.08 0.14
Matches are distributed among these distances:
27 28 0.12
28 19 0.08
32 5 0.02
33 59 0.24
34 97 0.40
35 5 0.02
36 8 0.03
37 20 0.08
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (33 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTTTCCT
Found at i:145184 original size:61 final size:61
Alignment explanation
Indices: 145119--145437 Score: 320
Period size: 61 Copynumber: 5.0 Consensus size: 61
145109 GCATTTTTTC
* * * *
145119 TTTAAAGCCCACAACTCCATGGCACCTTGTTCCTTTT-AAGTCCACAACGCCGTGGCACCCT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTT-CTTTTAAAGCCCACAACTCCGTGGCACCCT
* * * * *
145180 TTTAAAGCCCACAATTCCGTGGCACTTTTTTCATCTTT-AAGTCCACAACTCCGTGGCACCCG
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTC-T-TTTAAAGCCCACAACTCCGTGGCACCCT
145242 TTT-AAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTCTT
1 TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTT-AAAGCCCACAACTCCGTGGCACC--C--
145306 AT
61 -T
**
145308 TTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTT
1 TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCA--C----
145373 TTCCT
59 --CCT
* * *
145378 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCATAACTCTGTGGCACC
1 TTT-AAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACC
145438 TACAACTTTG
Statistics
Matches: 223, Mismatches: 16, Indels: 37
0.81 0.06 0.13
Matches are distributed among these distances:
59 3 0.01
60 2 0.01
61 74 0.33
62 29 0.13
63 1 0.00
66 3 0.01
67 19 0.09
68 33 0.15
69 1 0.00
70 56 0.25
73 1 0.00
75 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.13, T:0.31
Consensus pattern (61 bp):
TTTAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTCCGTGGCACCCT
Found at i:145239 original size:95 final size:97
Alignment explanation
Indices: 145089--145557 Score: 306
Period size: 95 Copynumber: 4.9 Consensus size: 97
145079 GCATATTGTC
* * * * *
145089 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAACTCCATGGCACCTTGTTCC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCATTTTAAGCCCACAACTCCGTGGCACCTT-TTCC
*
145152 TTTTAAGTCCACAACGCCGTGGCA-C-C-CTTT
65 TTTTAAGCCCACAACGCCGTGGCACCTCTCTTT
* *
145182 T-AAAGCCCACAATTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA-C----CC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCAT-TTTAAGCCCACAACTCCGTGGCACCTTTTCC
* *
145241 GTTTAAGCCCACAACTCCGTGGCACCTTCTTCTTT
65 TTTTAAGCCCACAACGCCGTGGCACC-TC-TCTTT
* *
145276 TCAAAGCCCACAACTCCGTGGCACCTTCTT-ATTTTCAAAGCCCACAACTCCGTGGCACCTTCTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCATTTT--AAGCCCACAACTCCGTGGCACCTT-TT
*** *
145340 -CTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCTTT
63 CCTTTT-AAGCCCACAACGCCGTGGCAC-C---TCT-CTTT
* * * ****
145380 TCAAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTAAAGCCCATAACTCTGTGGCACCTACAAC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCATTTT-AAGCCCACAACTCCGTGGCACCTTTTCC
* *** **
145444 TTTGT--G-GCAC--TTTC-T--TTCC-CT-TTT
65 TTT-TAAGCCCACAACGCCGTGGCACCTCTCTTT
145468 T-AAAGCCCACAACTCCGTGGCACTTTTTTC-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCATTTT-AAGCCCACAACTCCGTGGCAC-C-TTTT
* *
145531 CCCTTTTAAGTCCACAACTCCGTGGCA
63 -CCTTTTAAGCCCACAACGCCGTGGCA
145558 TCTTTCTCCC
Statistics
Matches: 298, Mismatches: 42, Indels: 68
0.73 0.10 0.17
Matches are distributed among these distances:
87 52 0.17
88 5 0.02
89 25 0.08
90 6 0.02
91 1 0.00
92 21 0.07
93 11 0.04
94 12 0.04
95 66 0.22
96 1 0.00
97 1 0.00
98 2 0.01
100 7 0.02
101 20 0.07
102 1 0.00
103 27 0.09
104 40 0.13
ACGTcount: A:0.22, C:0.33, G:0.13, T:0.32
Consensus pattern (97 bp):
TCAAAGCCCACAACTCCGTGGCACTTTTTTCATTTTAAGCCCACAACTCCGTGGCACCTTTTCCT
TTTAAGCCCACAACGCCGTGGCACCTCTCTTT
Found at i:145412 original size:70 final size:70
Alignment explanation
Indices: 145245--145562 Score: 322
Period size: 70 Copynumber: 4.4 Consensus size: 70
145235 GCACCCGTTT
* * *
145245 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTCTT-A
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTTTTTCC
145307 TTTTCA
65 TTTTCA
* **
145313 AAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTTCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
145378 TTTCA
66 TTTCA
* *
145383 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCATAACTCTGTGGCACCTACAACTTTG
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGG------C-AC----
*
145448 TGGCACTTTCTTTCCCTTTTTA
55 T----CTTT-TTT-CCTTTTCA
* *
145470 AAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
145535 TTT--
66 TTTCA
* *
145538 AAGTCCACAACTCCGTGGCATCTTT
1 AAGCCCACAACTCCGTGGCACCTTT
145563 CTCCCTTTTC
Statistics
Matches: 215, Mismatches: 15, Indels: 40
0.80 0.06 0.15
Matches are distributed among these distances:
67 20 0.09
68 55 0.26
69 4 0.02
70 60 0.28
71 2 0.01
72 4 0.02
76 2 0.01
77 2 0.01
80 2 0.01
81 2 0.01
85 4 0.02
86 3 0.01
87 55 0.26
ACGTcount: A:0.21, C:0.33, G:0.12, T:0.34
Consensus pattern (70 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTCCT
TTTCA
Found at i:145498 original size:87 final size:87
Alignment explanation
Indices: 145352--145523 Score: 283
Period size: 87 Copynumber: 2.0 Consensus size: 87
145342 TTTAAAGCCC
*
145352 ACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAA
1 ACAACTTTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAA
* *
145417 AGCCCATAACTCTGTGGCACCT
66 AGCCCACAACTCCGTGGCACCT
* *
145439 ACAACTTTGTGGCACT-TTCTTTCCCTTTTTAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTA
1 ACAACTTTGTGGCACTCTT-TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTA
145503 AAGCCCACAACTCCGTGGCAC
65 AAGCCCACAACTCCGTGGCAC
145524 TCTTTTTCCC
Statistics
Matches: 79, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
86 2 0.03
87 77 0.97
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (87 bp):
ACAACTTTGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAA
AGCCCACAACTCCGTGGCACCT
Found at i:145546 original size:35 final size:35
Alignment explanation
Indices: 145447--145583 Score: 174
Period size: 33 Copynumber: 3.9 Consensus size: 35
145437 CTACAACTTT
145447 GTGGCACTTTCTTTCCCTTTTTAAAGCCCACAACTCC
1 GTGGCACTTT-TTTCCC-TTTTAAAGCCCACAACTCC
145484 GTGGCACTTTTTT--CTTTTAAAGCCCACAACTCC
1 GTGGCACTTTTTTCCCTTTTAAAGCCCACAACTCC
*
145517 GTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCC
1 GTGGCACT-TTTTTCCCTTTTAAAGCCCACAACTCC
*
145552 GTGGCA-TCTTTCTCCCTTTTCTAAAGCCCACA
1 GTGGCACT-TTTTTCCC-TTT-TAAAGCCCACA
145584 CAAGTCGGTG
Statistics
Matches: 91, Mismatches: 3, Indels: 12
0.86 0.03 0.11
Matches are distributed among these distances:
33 27 0.30
34 15 0.16
35 22 0.24
36 9 0.10
37 18 0.20
ACGTcount: A:0.19, C:0.34, G:0.12, T:0.36
Consensus pattern (35 bp):
GTGGCACTTTTTTCCCTTTTAAAGCCCACAACTCC
Found at i:145679 original size:33 final size:34
Alignment explanation
Indices: 145565--145705 Score: 232
Period size: 34 Copynumber: 4.2 Consensus size: 34
145555 GCATCTTTCT
*
145565 CCCTTTTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
145599 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
1 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
* *
145633 CCCTTCTCCAAAGCCCACACAAGTTGGTGGC-AA
1 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
*
145666 CCATTCTCTAAAGCCCACACAAGTCGGTGGC-AA
1 CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
145699 CCCTTCT
1 CCCTTCT
145706 AAGCCCAATA
Statistics
Matches: 100, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
33 38 0.38
34 62 0.62
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.20
Consensus pattern (34 bp):
CCCTTCTCTAAAGCCCACACAAGTCGGTGGCAAA
Found at i:145696 original size:67 final size:67
Alignment explanation
Indices: 145565--145705 Score: 230
Period size: 67 Copynumber: 2.1 Consensus size: 67
145555 GCATCTTTCT
* * *
145565 CCCTTTTCTAAAGCCCACACAAGTCGGTGGCAAACCCTTCTCTAAAGCCCACACAAGTCGGTGGC
1 CCCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCATTCTCTAAAGCCCACACAAGTCGGTGGC
145630 AAA
66 -AA
*
145633 CCCTTCTCCAAAGCCCACACAAGTTGGTGGC-AACCATTCTCTAAAGCCCACACAAGTCGGTGGC
1 CCCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCATTCTCTAAAGCCCACACAAGTCGGTGGC
145697 AA
66 AA
145699 CCCTTCT
1 CCCTTCT
145706 AAGCCCAATA
Statistics
Matches: 69, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
66 9 0.13
67 32 0.46
68 28 0.41
ACGTcount: A:0.28, C:0.35, G:0.17, T:0.20
Consensus pattern (67 bp):
CCCTTCTCCAAAGCCCACACAAGTCGGTGGCAAACCATTCTCTAAAGCCCACACAAGTCGGTGGC
AA
Found at i:145763 original size:49 final size:49
Alignment explanation
Indices: 145705--146470 Score: 1098
Period size: 49 Copynumber: 15.7 Consensus size: 49
145695 GCAACCCTTC
* * * * *
145705 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATTTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145754 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145803 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145852 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145901 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145950 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
145999 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
146048 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCAT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * * *
146097 TAAGTCCAATGTCGATGGCCTTGAATCAGCATATTGGCATCATCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
146146 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
146195 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
*
146243 TAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* *
146292 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
146340 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * *
146383 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTT
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTT
*
146435 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTG
1 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
146471 ACATCCTTTT
Statistics
Matches: 636, Mismatches: 71, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
43 39 0.06
45 1 0.00
48 91 0.14
49 469 0.74
50 1 0.00
52 35 0.06
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:145879 original size:98 final size:98
Alignment explanation
Indices: 145705--146470 Score: 1224
Period size: 98 Copynumber: 7.9 Consensus size: 98
145695 GCAACCCTTC
* * *
145705 TAAGCCCAATATAGCTGGCCCTGAATCAGCATATTGGCACCTTCATTTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
145770 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
145803 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
145868 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
145901 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
145966 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
*
145999 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
146064 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* * * * *
146097 TAAGTCCAATGTCGATGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
146162 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* *
146195 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
* *
146259 GGCCTTGACTCAGCACATTGGCACCTTCATCTT
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* * * *
146292 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGTAGCT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
*
146356 GGCCTTGAATCAGCACATTGGCACC-T-----T
66 GGCCTTGACTCAGCACATTGGCACCTTCACCAT
* *
146383 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAATGTA
*
146448 GCTGGCCTTGAATCAGCACATTG
63 GCTGGCCTTGACTCAGCACATTG
146471 ACATCCTTTT
Statistics
Matches: 639, Mismatches: 25, Indels: 11
0.95 0.04 0.02
Matches are distributed among these distances:
91 38 0.06
94 1 0.00
95 40 0.06
96 1 0.00
97 142 0.22
98 417 0.65
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (98 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAGCT
GGCCTTGACTCAGCACATTGGCACCTTCACCAT
Done.