Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold438
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1141244
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
File 3 of 7
Found at i:406986 original size:197 final size:199
Alignment explanation
Indices: 406645--407040 Score: 706
Period size: 197 Copynumber: 2.0 Consensus size: 199
406635 AATGAGATTT
406645 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
1 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
* * * *
406710 TTTGTAAAAGATTTTTTTCCACGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATGT
66 CTTGTAAAAGATTTTTTTCCACGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTATAT
406775 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
131 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
406840 TGCA
196 TGCA
*
406844 GAAA-TATAAGGATTAAATTGC-CAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
1 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
* *
406907 CTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTATAT
66 CTTGTAAAAGATTTTTTTCCACGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTATAT
*
406972 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTGGT
131 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
407037 TGCA
196 TGCA
407041 AAGTTTGTTC
Statistics
Matches: 189, Mismatches: 8, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
197 168 0.89
198 17 0.09
199 4 0.02
ACGTcount: A:0.33, C:0.11, G:0.21, T:0.35
Consensus pattern (199 bp):
GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
CTTGTAAAAGATTTTTTTCCACGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTATAT
GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
TGCA
Found at i:407050 original size:681 final size:680
Alignment explanation
Indices: 405747--407461 Score: 2937
Period size: 681 Copynumber: 2.5 Consensus size: 680
405737 ACCTACATCC
* * * * * * * *
405747 GATTTGAAATTAATTTAGATGTGTGCTGAGCTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTG
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
* * * * * * * * *
405812 AAATTTTATTGCATGTATTTGTGCCCTGATGATGAATTGTTGTGTTGTAAATTATTTAGATAGGT
66 AAATTTCATTGCATGTATTTGTACCATGATCA-GAATTGTTGAGTTGCAACTCATTTAGATAGCT
* *
405877 TGGTCGAATCTATTTGAAATTGACAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
130 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
*
405942 TATAAGTTATTTAATGAGATTTGAAATAATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTAT
195 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTAT
406007 GGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
260 GGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
406072 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
325 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
406137 TGCAAAAATTTAAGGACTTGGTAGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
390 TGCAAAAATTTAAGGACTTGGTAGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
*
406202 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAA
455 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAA
*
406267 GCGGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
520 GAGGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
406332 TATGGAAAAATTTAAGAACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACA
585 TATGGAAAAATTTAAGAACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACA
406397 TGATCAACCAATTTGGCAAGCTTTTCTTGCT
650 TGATCAACCAATTTGGCAAGCTTTTCTTGCT
406428 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
*
406493 AAATTTCATTGCATGTATTTGTACCATGATCCAGAATTGTTAAGTTGCAACTCATTTAGATAGCT
66 AAATTTCATTGCATGTATTTGTACCATGAT-CAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
*
406558 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTTCCTTGATTTCTTGATT
130 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
406623 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTAT
195 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTAT
*
406688 GGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCACGATTTGTGGATTGTTCCAAGC
260 GGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
406753 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
325 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
*
406818 TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
390 TGCAAAAATTTAAGGACTTGGTAGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
406883 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAA
455 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAA
*
406948 GATGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
520 GAGGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
*
407013 TATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACA
585 TATGGAAAAATTTAAGAACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACA
* *
407078 TGATCAACCATTTTGGCAAGTTTTTCTTGCT
650 TGATCAACCAATTTGGCAAGCTTTTCTTGCT
407109 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTAT-AAAGTAGGTG
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
407173 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
66 AAATTTCATTGCATGTATTTGTACCATGAT-CAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
*
407238 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATT
130 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
* * * * * *
407303 TATAAGCTATTTAACGAGATTTGAAATTATAGGGATGAAACTGCAAAAAAGAAAAGTCATGCTTT
195 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGC-AAAAA-AAAAGTCATGCTCT
* * * * * * * * * *
407368 ATGGCCAAAAGTATTTGATCTATCCTTGTAAAAGACTTTTCTCCATGATTTCTAGATGGTTCCAA
258 ATGGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAA
* *
407433 GCTGATTTAGTGATTTGATTGTGTGTTTT
323 GCTGATTTGGTGATTTGATTATGTGTTTT
407462 GTAACTAATT
Statistics
Matches: 978, Mismatches: 53, Indels: 5
0.94 0.05 0.00
Matches are distributed among these distances:
680 175 0.18
681 708 0.72
682 95 0.10
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (680 bp):
GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
AAATTTCATTGCATGTATTTGTACCATGATCAGAATTGTTGAGTTGCAACTCATTTAGATAGCTT
GGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATTT
ATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATG
GCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCT
GATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATAT
GCAAAAATTTAAGGACTTGGTAGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCTA
TGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAAG
AGGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAAT
ATGGAAAAATTTAAGAACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACAT
GATCAACCAATTTGGCAAGCTTTTCTTGCT
Found at i:408608 original size:486 final size:485
Alignment explanation
Indices: 406844--409356 Score: 3484
Period size: 485 Copynumber: 5.2 Consensus size: 485
406834 CTTGGTTGCA
* * * *
406844 GAAA-TATAAGGATTAAATTGC-CAAA--AAAAGTCATGCTCTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
** *
406905 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTAT
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
* * *
406970 ATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTG
131 GTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
** * *
407035 GTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACATGATCAACCATTTTGGCAAGTT
196 GTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGTT
* * * *
407100 TTTCTTGCTGATTTGAAATTAATTTTGATGCGTGATGAGGTGTTT-ACGTAAGAAAATTCTTAT-
261 TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGA-ATGAGAAAATTCTTGTA
* * *
407163 AAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCAT
325 AAAGTAGGTGAAATTTCATTGCATGTA-TTGTATCATGATGCCGAATTGTTGAGTTGCAAATCAT
407228 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA
389 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA
*
407293 TTTCTTGATTTATAAGCTATTTAACGAGATTT
454 TTTCTTGATTTATAAGCTATTTAATGAGATTT
* * * * *
407325 GAAATTATAGGGATGAAACTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCTA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
* * * * * * *
407390 TCCTTGTAAAAGACTTTTCTCCATGATTTCTAGATGGTTCCAAGCTGATTTAGTGATTTGA-T-T
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
* * * * *
407453 GTG------TG-TTTTGTAACTAATTAGGGGTCAAAAT-CTAAATAGGCAAAAATTTTAA-GACT
131 GTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGC-AAATATGCAAAAA-TTTAAGGACT
* * * * * *
407509 TGGTTGCAAAGTTTGCTGCATGAAATTTCTTATTTAGCCGAAACATGATCAGCCATTTTAGCATG
194 TGGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATG
* * * *
407574 TTTTTCTTGCTGCTTTGATATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAGTTCTTGT
259 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGAATGAGAAAATTCTTGT
* * * * *
407639 AAAGGTAGGTGAAATTTCGTTGCATGTATTTGTGTCATGATGCTGATTTGTTGAGTTGCAAATCA
324 AAAAGTAGGTGAAATTTCATTGCATGTA-TTGTATCATGATGCCGAATTGTTGAGTTGCAAATCA
* * * * *
407704 TTTAGATGGCTTGGTCGAATCTATTTGAAATTTATAAAGATGATATTGTGCTAATCTTTGCCTTG
388 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTG
*
407769 ATTTCTTGATTTATAAGTTATTTAATGAGATTT
453 ATTTCTTGATTTATAAGCTATTTAATGAGATTT
* * *
407802 GAAATTTTAGGGATTAAATTGCAAAAGTGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
* *
407867 GCCTTGTAAAGTACTTTTTTTCCATGATTTGTGGATGGTTGCAAGCTGATTTGGTGATTTGA-TA
66 GCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTA
* * *
407931 TTGTGTTTTAATGATGTTGTGATTAATTAAGCGTCAAAATGCAAATATGCAAAAATTTAAGGACT
130 -TGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACT
* * * *
407996 TGGTTGCAAAGTTTGTTCCATGAAATATCATATTTAGCTGAATCCTGATCAACCATTTTGGCCTG
194 TGGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATG
408061 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAA-GAGAAAATTCTTG
259 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTG-AATGAGAAAATTCTTG
* * * * *
408125 TAAAAGTAGGTGAAATTTCATTACATGTATTCGTATCATGCTGCTGAATTGTTGAGTTACAAATG
323 TAAAAGTAGGTGAAATTTCATTGCATGTATT-GTATCATGATGCCGAATTGTTGAGTTGCAAATC
* *
408190 ATTTAGATAGCTTTGTTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
387 ATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
* *
408255 GATTTCTTGACTTATAAGTTATTTAATGAGATTT
452 GATTTCTTGATTTATAAGCTATTTAATGAGATTT
408289 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
* *
408354 GCTTTGTAAATGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGT-ATTTTGATTA
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGA-TTTGATTA
* *
408418 TGTGCTTTAATGATGTTATGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAA-GAGCT
130 TGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGA-CT
* * *
408482 TGGTTGCAAAGTTTGTTTCATGAAATTTCATATTTAGCTGAAACATGATCAACAAATTTGGCATG
194 TGGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATG
* *
408547 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCATG-TTACGGTGTTTGAATGAGAAAATTCTTG
259 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGA-GGTGTTTGAATGAGAAAATTCTTG
* * * * *
408611 TAAAAGTAGGTGAACTATCATTGCATGTAATTATATCA-AATGCCAAATTGTTGAGTTGCAAATC
323 TAAAAGTAGGTGAAATTTCATTGCATGT-ATTGTATCATGATGCCGAATTGTTGAGTTGCAAATC
* * * *
408675 ATTTATATAGCTTTGTCGAATCTGTTTGAATTTGATAAAGATGATATTGTGCTTATTTTCGCCTT
387 ATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
408740 GATTTCTTGATTTATAAGCTATTTAACT-AGATTT
452 GATTTCTTGATTTATAAGCTATTTAA-TGAGATTT
* *
408774 GAAATTATAGGG-TTGAAATTG-AGAAAATGAAAAGTCATGCTTTATGGCCAAAAGT-TAGTGAT
1 GAAATTATAGGGATT-AAATTGCA-AAAATGAAAAGTCATGCTTTATGGCCAAAACTAT-TTGAT
* * *
408836 CTAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGAT
63 CGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGAT
* * * * * *
408901 TATGCGTTTTTATGATGCTGTAATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTTAGGAC
128 TATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGAC
* * *
408966 TTGGTTGCAAAGTTTGTTCCATTAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTT-GCA
193 TTGGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCA-TTTTGGCA
* * * * * *
409030 TGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATTAAGAGGTGTTTGCATGGGAATATTCTT
257 TGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGAATGAGAAAATTCTT
*
409095 GTAAAAGTAGGTGAAATATCATTGCATGTAATTGTATCATGATGCCGAATTGTTGAGTTGCAAAT
322 GTAAAAGTAGGTGAAATTTCATTGCATGT-ATTGTATCATGATGCCGAATTGTTGAGTTGCAAAT
*
409160 CATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGTCT
386 CATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
* *
409225 TGATTTCTTGATTTGTAAGCTATTTAACGAGATTT
451 TGATTTCTTGATTTATAAGCTATTTAATGAGATTT
* *
409260 GAAATTATTGGGATTAAATTG-AAAAATTGAAAAGTCATGCTTTATGGCCAAAAGT-TTATGATC
1 GAAATTATAGGGATTAAATTGCAAAAA-TGAAAAGTCATGCTTTATGGCCAAAACTATT-TGATC
*
409323 TAGCCTTGTAAAGGATTTTTTTCCATGATGTTGT
64 GAGCCTTGTAAAGGATTTTTTTCCATGAT-TTGT
409357 AATTGATTAG
Statistics
Matches: 1802, Mismatches: 188, Indels: 78
0.87 0.09 0.04
Matches are distributed among these distances:
475 1 0.00
476 147 0.08
477 222 0.12
478 43 0.02
480 4 0.00
481 4 0.00
482 14 0.01
483 6 0.00
484 5 0.00
485 518 0.29
486 458 0.25
487 378 0.21
488 2 0.00
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (485 bp):
GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGATCGA
GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
GTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
GTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGTT
TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGAATGAGAAAATTCTTGTAA
AAGTAGGTGAAATTTCATTGCATGTATTGTATCATGATGCCGAATTGTTGAGTTGCAAATCATTT
AGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATT
TCTTGATTTATAAGCTATTTAATGAGATTT
Found at i:409167 original size:971 final size:963
Alignment explanation
Indices: 406844--410202 Score: 4239
Period size: 971 Copynumber: 3.5 Consensus size: 963
406834 CTTGGTTGCA
* * *
406844 GAAA-TATAAGGATTAAATTGC-CAAA--AAAAGTCATGCTCTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
** *
406905 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTCTTCCAAGATGATTTGGTGATTTGATTAT
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
* * * *
406970 ATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTG
131 GTGTTTTAATGATGTTGTGATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
* * *
407035 GTTGCAAAGTTTGTT-CTTTGAACTTTCATATTTAGCTGAAACATGATCAACCATTTTGGCAAGT
196 GTTGCAAAGTTTGTTCCATT-AAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGT
* * * * *
407099 TTTTCTTGCTGATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTAT-
260 TTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTA
* * *
407163 AAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCAT
325 AAAGTAGGTGAAATTTCATTGCATGTAATTGTATCATGATGCAGAATTGTTGAGTTGCAAATCAT
407228 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA
390 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA
* * *
407293 TTTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATGAAACTGCAAAAAAGAAAA
455 TTTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAA
* * * *
407358 GTCATGCTTTATGGCCAAAAGTATTTGATCTATCCTTGTAAAAGACTTTTCTCCATGATTTCTAG
520 GTCATGCTTTATGGCCAAAAGTATTTGATCTAGCCTTGTAAAAGATTTTTTTCCATGATTTGTAG
*
407423 ATGGTTCCAAGCTGATTTAGTGATTTGATTGTGTGTTTTGTAACTAATTAGGGGTCAAAATCTAA
585 ATGGTTCCAAGCTGATTTAGTGATTTGATTATGTGTTTTGTAACTAATTAGGGGTCAAAATCTAA
*
407488 ATAGGCAAAAATTTTAAGACTTGGTTGCAAAGTTTGCTGCATGAAATTTCTTATTTAGCCGAAAC
650 ATAGGCAAAAATTTTAAGACTTGGTTGCAAAGTTTGCTGCATGAAATTTCATATTTAGCCGAAAC
* * * * * *
407553 ATGATCAGCCATTTTAGCATGTTTTTCTTGCTGCTTTGATATTAATTTAGATGCGTGATGAGGTG
715 ATGATCAACAAATTTAGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATGAGGTG
* * * * * * * * * *
407618 TTTGCATGAGAAAGTTCTTGTAAAGGTAGGTGAAATTTCGTTGCATGTATTTGTGTCATGATGCT
780 TTTGAATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTAATTATATCATAATGCC
* * *
407683 GATTTGTTGAGTTGCAAATCATTTAGATGGCTTGGTCGAATCTATTTGAAATTTATAAAGATGAT
845 AAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTATTTGAAATTTATAAAGATGAT
*
407748 ATTGTGCTAATCTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTT
910 ATTGTGCTAATCTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGATTT
* *
407802 GAAATTTTAGGGATTAAATTGCAAAAGTGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* *
407867 GCCTTGTAAAGTACTTTTTTTCCATGATTTGTGGATGGTTGCAAGCTGATTTGGTGATTTGA-TA
66 GCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTA
*
407931 TTGTGTTTTAATGATGTTGTGATTAATTAAGC-GTCAAAATGCAAATATGCAAAAATTTAAGGAC
130 -TGTGTTTTAATGATGTTGTGATTGATT-AGCGGTCAAAATGCAAATATGCAAAAATTTAAGGAC
* * * * *
407995 TTGGTTGCAAAGTTTGTTCCATGAAATATCATATTTAGCTGAATCCTGATCAACCATTTTGGCCT
193 TTGGTTGCAAAGTTTGTTCCATTAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCAT
*
408060 GTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTG
258 GTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTG
* * * *
408125 TAAAAGTAGGTGAAATTTCATTACATGT-ATTCGTATCATGCTGCTGAATTGTTGAGTTACAAAT
323 TAAAAGTAGGTGAAATTTCATTGCATGTAATT-GTATCATGATGCAGAATTGTTGAGTTGCAAAT
* * *
408189 GATTTAGATAGCTTTGTTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
387 CATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
* * *
408254 TGATTTCTTGACTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGA
452 TGATTTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGA
* * * *
408319 AAAGTCATGCTTTATGGCCAAAACTATTTGATCGAGCTTTGTAAATGATTTTTTTCCATGATTTG
517 AAAGTCATGCTTTATGGCCAAAAGTATTTGATCTAGCCTTGTAAAAGATTTTTTTCCATGATTTG
* * * *
408384 TGGATGGTTCCAAGCTGATTTGGT-ATTTTGATTATGTGCTTTAATGATGTTATGATTGATTAGG
582 TAGATGGTTCCAAGCTGATTTAGTGA-TTTGATTATGTG--TT--T--TG-TA--ACTAATTAGG
* * *
408448 GGTCAAAATGC-AAATATGCAAAAA-TTTAAGAGCTTGGTTGCAAAGTTTGTTTCATGAAATTTC
637 GGTCAAAAT-CTAAATAGGCAAAAATTTTAAGA-CTTGGTTGCAAAGTTTGCTGCATGAAATTTC
* *
408511 ATATTTAGCTGAAACATGATCAACAAATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAG
700 ATATTTAGCCGAAACATGATCAACAAATTTAGCATGTTTTTCTTGCTGATTTGAAATTAATTTAG
* *
408576 ATGCATG-TTACGGTGTTTGAATGAGAAAATTCTTGTAAAAGTAGGTGAACTATCATTGCATGTA
765 ATGCATGATGA-GGTGTTTGAATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTA
* * *
408640 ATTATATCA-AATGCCAAATTGTTGAGTTGCAAATCATTTATATAGCTTTGTCGAATCTGTTTG-
829 ATTATATCATAATGCCAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTATTTGA
*
408703 AATTTGATAAAGATGATATTGTGCTTAT-TTTCGCCTTGATTTCTTGATTTATAAGCTATTTAAC
894 AATTT-ATAAAGATGATATTGTGCTAATCTTT-GCCTTGATTTCTTGATTTATAAGCTATTTAA-
408767 T-AGATTT
956 TGAGATTT
* * *
408774 GAAATTATAGGG-TTGAAATTG-AGAAAATGAAAAGTCATGCTTTATGGCCAAAAGT-TAGTGAT
1 GAAATTATAGGGATT-AAATTGCA-AAAATGAAAAGTCATGCTTTATGGCCAAAACTAT-TTGAC
* * *
408836 CTAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGAT
63 CGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGAT
* * * * *
408901 TATGCGTTTTTATGATGCTGTAATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTTAGGAC
128 TATGTGTTTTAATGATGTTGTGATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTAAGGAC
* *
408966 TTGGTTGCAAAGTTTGTTCCATTAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTT-GCA
193 TTGGTTGCAAAGTTTGTTCCATTAAATTTCATATTTAGCTGAAACATGATCAACCA-TTTTGGCA
* * * * *
409030 TGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATTAAGAGGTGTTTGCATGGGAATATTCTT
257 TGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTT
* *
409095 GTAAAAGTAGGTGAAATATCATTGCATGTAATTGTATCATGATGCCGAATTGTTGAGTTGCAAAT
322 GTAAAAGTAGGTGAAATTTCATTGCATGTAATTGTATCATGATGCAGAATTGTTGAGTTGCAAAT
*
409160 CATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGTCT
387 CATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
* *
409225 TGATTTCTTGATTTGTAAGCTATTTAACGAGATTTGAAATTATTGGGATTAAATTG-AAAAATTG
452 TGATTTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGCAAAAA-TG
409289 AAAAGTCATGCTTTATGGCCAAAAGT-TTATGATCTAGCCTTGT-AAAG------------GATT
516 AAAAGTCATGCTTTATGGCCAAAAGTATT-TGATCTAGCCTTGTAAAAGATTTTTTTCCATGATT
*
409340 T-T---T--TTCC-A--TG----A-TG--TTG--TA-----ATTG------ATTAGGGGTCAAAA
580 TGTAGATGGTTCCAAGCTGATTTAGTGATTTGATTATGTGTTTTGTAACTAATTAGGGGTCAAAA
* * * * * * * *
409376 TCCAAATATGCAAAAA-TTCAAGGACTTAGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGT
645 TCTAAATAGGCAAAAATTTTAA-GACTTGGTTGCAAAGTTTGCTGCATGAAATTTCATATTTAGC
* * * * **
409440 CGAAACATGATCAACCATTTTAGCATATTTTTCATGCTGATTTGAAATTAATTTAGATGTGTGAT
709 CGAAACATGATCAACAAATTTAGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGAT
* * * * * *
409505 GAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAAGTGAAATTTCATTGCATGTATTTGTATCAT
774 GAGGTGTTTGAATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTAATTATATCAT
* * ** * * *
409570 GACGCTGATTTGTTGAGTTGCAAATCATTCAGATAGCTTGGTCGAATCTATTTGAAATTGATAAA
839 AATGCCAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTATTTGAAATTTATAAA
* * * * * *
409635 GATGATATTGTGCTTATTTTTGCCTTGATTTCTAT-TTTTATAAGTTATTTTATGAGATTC
904 GATGATATTGTGCTAATCTTTGCCTTGATTTCT-TGATTTATAAGCTATTTAATGAGATTT
* * * * *
409695 GAAATTATGGGGATTAAAATGCAAAAATGAAATGTCATGCTTTATGGCCAAAAGTATTTGGCCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* * *
409760 GCCTTGTGAAGGATTTTTTTCAATGATTTGTGGATGGTTCCAAGCTGATTTGGGGATTTGATTAT
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
* * * *
409825 GTGTTTTTATGATGTTGTGATTGATTAGGGGTGAAAATGCAAATAT-CTAAAAATTTAAGGATTT
131 GTGTTTTAATGATGTTGTGATTGATTAGCGGTCAAAATGCAAATATGC-AAAAATTTAAGGACTT
* * * * * * *
409889 GGTCGCAAAGTTTGTTCCATGAAATTTCTTATTCAGCCGAAACATGACCAACCATTTTGGCTTGC
195 GGTTGCAAAGTTTGTTCCATTAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATG-
* * * * *
409954 TTTTTCTTACTGATTTGAAAGTAATTTAGATGTGTGATGAGGTGTGTGTATGAGAAAATTCTTGT
259 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGT
* * * * * * *
410019 AAATGGAGGTAAAAGTTCATTGCATGTATTTGT-TCCATGATGCTGAATTGTTGAGTTGGAAATC
324 AAAAGTAGGTGAAATTTCATTGCATGTAATTGTAT-CATGATGCAGAATTGTTGAGTTGCAAATC
* * * * ** *
410083 ATTTGGATAGCGTT-GTCGAGTCTATTTGAAACTGATATTGATGATATTGTGCTTACTTTTGCCT
388 ATTTAGATAGC-TTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
* * *
410147 AGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTG
452 TGATTTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTG
410203 TGAAAGCTCA
Statistics
Matches: 2120, Mismatches: 229, Indels: 140
0.85 0.09 0.06
Matches are distributed among these distances:
919 1 0.00
920 184 0.09
921 323 0.15
922 225 0.11
923 2 0.00
929 2 0.00
931 1 0.00
940 2 0.00
942 3 0.00
944 1 0.00
949 2 0.00
951 1 0.00
952 4 0.00
954 1 0.00
957 1 0.00
958 9 0.00
959 15 0.01
960 2 0.00
962 49 0.02
963 216 0.10
964 267 0.13
966 2 0.00
968 1 0.00
970 15 0.01
971 430 0.20
972 185 0.09
973 175 0.08
974 1 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (963 bp):
GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
GTGTTTTAATGATGTTGTGATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
GTTGCAAAGTTTGTTCCATTAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGTT
TTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAA
AAGTAGGTGAAATTTCATTGCATGTAATTGTATCATGATGCAGAATTGTTGAGTTGCAAATCATT
TAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGAT
TTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAG
TCATGCTTTATGGCCAAAAGTATTTGATCTAGCCTTGTAAAAGATTTTTTTCCATGATTTGTAGA
TGGTTCCAAGCTGATTTAGTGATTTGATTATGTGTTTTGTAACTAATTAGGGGTCAAAATCTAAA
TAGGCAAAAATTTTAAGACTTGGTTGCAAAGTTTGCTGCATGAAATTTCATATTTAGCCGAAACA
TGATCAACAAATTTAGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATGAGGTGT
TTGAATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTAATTATATCATAATGCCA
AATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTATTTGAAATTTATAAAGATGATA
TTGTGCTAATCTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGATTT
Found at i:409734 original size:435 final size:435
Alignment explanation
Indices: 408912--409790 Score: 1327
Period size: 435 Copynumber: 2.0 Consensus size: 435
408902 ATGCGTTTTT
* * ** *
408912 ATGATGCTGTAATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTTAGGACTTGGTTGCAAA
1 ATGATGTTGTAATTGATTAGCGGTCAAAATCCAAATATGCAAAAATTCAAGGACTTAGTTGCAAA
* * *
408977 GTTTGTTCCATTAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTTGCATGTTTTTCTTGC
66 GTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTTGCATATTTTTCATGC
* ** * *
409042 TGATTTGAAATTAATTTAGATGCATTAAGAGGTGTTTGCATGGGAATATTCTTGTAAAAGTAGGT
131 TGATTTGAAATTAATTTAGATGCATGAAGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAAGT
* *
409107 GAAATATCATTGCATGTAATTGTATCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGC
196 GAAATATCATTGCATGTAATTGTATCATGACGCCGAATTGTTGAGTTGCAAATCATTCAGATAGC
* *
409172 TTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGTCTTGATTTCTTGAT
261 TTGGTCGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGAT
* * * *
409237 TTGTAAGCTATTTAACGAGATTTGAAATTATTGGGATTAAATTGAAAAATTGAAAAGTCATGCTT
326 TTATAAGCTATTTAACGAGATTCGAAATTATGGGGATTAAAATGAAAAATTGAAAAGTCATGCTT
* * *
409302 TATGGCCAAAAGT-TTATGATCTAGCCTTGTAAAGGATTTTTTTCC
391 TATGGCCAAAAGTATT-TGACCGAGCCTTGTAAAGGATTTTTTTCA
*
409347 ATGATGTTGTAATTGATTAGGGGTCAAAATCCAAATATGCAAAAATTCAAGGACTTAGTTGCAAA
1 ATGATGTTGTAATTGATTAGCGGTCAAAATCCAAATATGCAAAAATTCAAGGACTTAGTTGCAAA
*
409412 GTTTGTTCCATGAAATTTCTTATTTAGTCGAAACATGATCAACCA-TTTTAGCATATTTTTCATG
66 GTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTT-GCATATTTTTCATG
** *
409476 CTGATTTGAAATTAATTTAGATGTGTGATGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAAG
130 CTGATTTGAAATTAATTTAGATGCATGAAGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAAG
* * * *
409541 TGAAATTTCATTGCATGTATTTGTATCATGACGCTGATTTGTTGAGTTGCAAATCATTCAGATAG
195 TGAAATATCATTGCATGTAATTGTATCATGACGCCGAATTGTTGAGTTGCAAATCATTCAGATAG
409606 CTTGGTCGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTAT-
260 CTTGGTCGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT-TG
* * * * *
409670 TTTTATAAGTTATTTTATGAGATTCGAAATTATGGGGATTAAAATGCAAAAA-TGAAATGTCATG
324 ATTTATAAGCTATTTAACGAGATTCGAAATTATGGGGATTAAAATG-AAAAATTGAAAAGTCATG
* *
409734 CTTTATGGCCAAAAGTATTTGGCCGAGCCTTGTGAAGGATTTTTTTCA
388 CTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCA
409782 ATGAT-TTGT
1 ATGATGTTGT
409791 GGATGGTTCC
Statistics
Matches: 400, Mismatches: 40, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
434 8 0.02
435 384 0.96
436 8 0.02
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.39
Consensus pattern (435 bp):
ATGATGTTGTAATTGATTAGCGGTCAAAATCCAAATATGCAAAAATTCAAGGACTTAGTTGCAAA
GTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCAGTTTTGCATATTTTTCATGC
TGATTTGAAATTAATTTAGATGCATGAAGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAAGT
GAAATATCATTGCATGTAATTGTATCATGACGCCGAATTGTTGAGTTGCAAATCATTCAGATAGC
TTGGTCGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGAT
TTATAAGCTATTTAACGAGATTCGAAATTATGGGGATTAAAATGAAAAATTGAAAAGTCATGCTT
TATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATTTTTTTCA
Found at i:410929 original size:197 final size:199
Alignment explanation
Indices: 410586--410981 Score: 715
Period size: 197 Copynumber: 2.0 Consensus size: 199
410576 AATGAGATTT
410586 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCAAGC
1 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCAAGC
* *
410651 TTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATGT
66 CTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
410716 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
131 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
410781 TGCA
196 TGCA
* *
410785 GAAA-TATAAGGATTAAATTGC-CAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
1 GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCAAGC
*
410848 CTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
66 CTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
* *
410913 GTTTTAATGGTGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTGGT
131 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
410978 TGCA
196 TGCA
410982 AAGTTTGTTC
Statistics
Matches: 190, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
197 169 0.89
198 17 0.09
199 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.21, T:0.35
Consensus pattern (199 bp):
GAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTATGGCCAAAACTATTTGACCAAGC
CTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
TGCA
Found at i:411610 original size:198 final size:199
Alignment explanation
Indices: 411267--411663 Score: 708
Period size: 198 Copynumber: 2.0 Consensus size: 199
411257 AATGAGATTT
*
411267 GAAATTATAAGGATAAAATTGCAAAAAAGAAGTCGTGCTCTATGGCCAAAACTATTTGACCGAGC
1 GAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
* *
411332 TTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATGT
66 CTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
411397 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
131 GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
411462 TGCA
196 TGCA
* *
411466 GAAA-TATAAGGATTAAATTGCCAAAAA-AAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
1 GAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
*
411529 CTTGTAAAGGATTTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATA
66 CTTGTAAAAGA-TTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATA
*
411594 TGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTGG
130 TGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGG
411659 TTGCA
195 TTGCA
411664 AAGTTTGTTC
Statistics
Matches: 190, Mismatches: 7, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
197 44 0.23
198 142 0.75
199 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.22, T:0.35
Consensus pattern (199 bp):
GAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTATGGCCAAAACTATTTGACCGAGC
CTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATAT
GTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGCAAAAATTTAAGGACTTGGT
TGCA
Found at i:411844 original size:681 final size:681
Alignment explanation
Indices: 410369--412084 Score: 2984
Period size: 681 Copynumber: 2.5 Consensus size: 681
410359 ACATACATCC
* * * * * * * *
410369 GATTTGAAATTAATTTAGATGTGTGCTGAGCTGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTG
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
* * * * * * * *
410434 AAATTTTATTGCATGTATTTGTGCCCTGATGCAGAATTGTTGGGTTGTAAATTATTTAGATAGGT
66 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
* * *
410499 TGGTCGAATCTATTTGAAATTGACAAAGATGATATTGTGTTTATTTTTGCCTTCATTTCTTGATT
131 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
* *
410564 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAAAAGTCATGCTCTAT
196 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTAT
410629 GGCCAAAACTATTTGACCAAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
261 GGCCAAAACTATTTGACCAAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
410694 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
326 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
410759 TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
391 TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
410824 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAA
456 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAA
*
410889 GCTGATTTGGTGATTTGATTATATGTTTTAATGGTGTTGTGATTGATTAGGGGTCAAAACGCAAA
521 GCTGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
410954 TATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATAGTTAGCTGAAACA
586 TATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATAGTTAGCTGAAACA
411019 TGATCAACCAATTTGGCAAGTTTTTCTTGCT
651 TGATCAACCAATTTGGCAAGTTTTTCTTGCT
*
411050 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTA
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
411115 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
66 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
411180 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
131 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
*
411245 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATAAAATTGCAAAAAAGAAGTCGTGCTCTAT
196 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTAT
*
411310 GGCCAAAACTATTTGACCGAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
261 GGCCAAAACTATTTGACCAAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
411375 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
326 TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
411440 TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
391 TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
411505 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTTCCATGATTTGTGGATTGTTCCA
456 ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATTGTTCCA
411570 AGCTGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAA
520 AGCTGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAA
*
411635 ATATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAAC
585 ATATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATAGTTAGCTGAAAC
411700 ATGATCAACCAATTTGGCAAGTTTTTCTTGCT
650 ATGATCAACCAATTTGGCAAGTTTTTCTTGCT
411732 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
1 GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
411797 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTT-AGTTGCAACTCATTTAGATAGCT
66 AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
411861 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
131 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
* * * * * *
411926 TATAAGCTATTTAACGAGATTTGAAATTATAGGGATGAAACTGCAAAAAAGAAAAGTCATGCTTT
196 TATAAGTTATTTAATGAGATTTGAAATTATAAGGATAAAATTGCAAAAAAG--AAGTCATGCTCT
* * * * * * * * * * *
411991 ATGACCAAAAGTATTTGATCTATCCTTGTAAAAGACTTTTCTCCATGATTTCTAGATGGTTCCAA
259 ATGGCCAAAACTATTTGACCAAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAA
* * *
412056 GCTGATTTAGTGATTTGATTGTGTATTTT
324 GCTGATTTGGTGATTTGATTATGTGTTTT
412085 GTAGCTAATT
Statistics
Matches: 984, Mismatches: 48, Indels: 4
0.95 0.05 0.00
Matches are distributed among these distances:
681 600 0.61
682 294 0.30
683 90 0.09
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (681 bp):
GATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATAAAAGTAGGTG
AAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATTTAGATAGCT
TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGATTTCTTGATT
TATAAGTTATTTAATGAGATTTGAAATTATAAGGATAAAATTGCAAAAAAGAAGTCATGCTCTAT
GGCCAAAACTATTTGACCAAGCTTTGTAAAAGATTTTTTTCCATGATTTGTGGATTGTTCCAAGC
TGATTTGGTGATTTGATTATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATA
TGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCAAAAAAAGTCATGCTCT
ATGGCCAAAACTATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAA
GCTGATTTGGTGATTTGATTATATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAA
TATGGAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCTTTGAACTTTCATAGTTAGCTGAAACA
TGATCAACCAATTTGGCAAGTTTTTCTTGCT
Found at i:413711 original size:485 final size:485
Alignment explanation
Indices: 411466--414083 Score: 3607
Period size: 486 Copynumber: 5.4 Consensus size: 485
411456 CTTGGTTGCA
* * *
411466 GAAA-TATAAGGATTAAATTGC-CAAA--AAAAGTCATGCTCTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
*
411527 GCCTTGTAAAGGATTTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTA
66 GCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTA
* * *
411592 TATGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTT
130 TGTGTTTT-ATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
** * * *
411657 GGTTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACATGATCAACCAATTTGGCAAGT
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGT
* * * * * *
411722 TTTTCTTGCTGATTTGAAATTAATTTTGATGCGTGATGAGGTGTTTACGTAAGAAAATTCTTATA
259 TTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGAAGAGGTGTTTGCATGAGAAAATTCTTGTA
* * *
411787 AAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTT-AGTTGCAACTCAT
324 AAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCAT
*
411851 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGTTTATTTTTGCCTTGA
389 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA
* *
411916 TTTCTTGATTTATAAGCTATTTAACGAGATTT
454 TTTCTTGATTTATAAGTTATTTAATGAGATTT
* * * * * * *
411948 GAAATTATAGGGATGAAACTGCAAAAAAGAAAAGTCATGCTTTATGACCAAAAGTATTTGATCTA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* * * * * * *
412013 TCCTTGTAAAAGACTTTTCTCCATGATTTCTAGATGGTTCCAAGCTGATTTAGTGATTTGA-T-T
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
* * * *
412076 GTG---TAT--T-TTGT-AGCTAATTAGGGGTCAAAAT-CTAAATAGGCAAAAATTTAAAGACTT
131 GTGTTTTATGATGTTGTGA-TTGATTAGGGGTCAAAATGC-AAATATGCAAAAATTTAAGGACTT
* * * * * *
412133 GGTTGCAAAGTTTGCTGCATGAAATTTCTTATTTAGCCGAAACATGATCAGCCATTTTTAGCATG
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCA-TTTTGGCATG
* * * *
412198 TTTTTCTTGCTGCTTTGATATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAGTTCTTGT
258 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGAAGAGGTGTTTGCATGAGAAAATTCTTGT
* * * *
412263 AAAGGTAGGTGAAATTTCGTTGCATGTATTTGTGTCATGATGCTGATTTGTTGAGTTGCAAATCA
323 AAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCA
* * * * *
412328 TTTAGATGGCTTGGTCGAATCTATTTGAAATTTATAAAGATGATATTGTGCTAATCTTTGCCTTG
388 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTG
412393 ATTTCTTGATTTATAAGTTATTTAATGAGATTT
453 ATTTCTTGATTTATAAGTTATTTAATGAGATTT
* *
412426 GAAATTTTAGGGATTAAATTGCAAAAGTGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* *
412491 GCCTTGTAAAGTATTTTTTTTCCATGATTTGTGGATGGTTGCAAGCTGATTTGGTGATTTGA-TA
66 GCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTA
* *
412555 TTGTGTTTTAATGATGTTGTGATTAATTAGGCGTCAAAATGCAAATATGCAAAAATTTAAGGACT
130 -TGTGTTTT-ATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACT
* * *
412620 TGGTTGCAAAGTTTGTTCCATGAAATATCATATTTAGCTGAAACCTGATCAACCATTTTGGCCTG
193 TGGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATG
* *
412685 TTTTTCTTGCTGATTTGAAATTAATTTATATGCGTGATA-AGGTGTTTGCAAGAGAAAATTCTTG
258 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGA-AGAGGTGTTTGCATGAGAAAATTCTTG
* * * *
412749 TAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGCTGCTGAATTGTTGAGTTACAAATG
322 TAAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATC
*
412814 ATTTAGATAGCTTGGTTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
387 ATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
*
412879 GATTTCTTGACTTATAAGTTATTTAATGAGATTT
452 GATTTCTTGATTTATAAGTTATTTAATGAGATTT
412913 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* *
412978 GCTTTGTAAATGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGT-ATTTTGATTA
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGA-TTTGATTA
* * *
413042 TGTGCTTTAATGATGTTATGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGGCTT
130 TGTG-TTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
* * * *
413107 GGTTACAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACAAATTTAGCATGT
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGT
* * * *
413172 TTTTCTTGCTGATTTGAAATTAATTTAGATGCATGTTA-CGGTGTTTGAATGAGAAAATTCTTGT
259 TTTTCTTGCTGATTTGAAATTAATTTAGATGCGTG-AAGAGGTGTTTGCATGAGAAAATTCTTGT
* * *
413236 AAAAGTAGGTAAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTACAAATCA
323 AAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCA
* * * * *
413301 TTTAAATAGCTTGGTCGAATCTGTTTAAAAATGATAATGACGATATTGTGCTTATTTTTGCCTTG
388 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTG
*
413366 ATTTCTTGATTTATAAGTTACTTAATGAGATTT
453 ATTTCTTGATTTATAAGTTATTTAATGAGATTT
* * *
413399 GAAATTATAGGGATTAAATTACAAAAATGAAAAGTCATGCTTT-TGGCCTACACTATTTGACCGA
1 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
* ** * *
413463 GCCTTGTCAAGGATTTTTTTTAATGATTTGTGGATGGTTTCGAA-CTGATTTGGTGATTAGATTA
66 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGG-TTCCAAGCTGATTTGGTGATTTGATTA
* * * *
413527 TGTGTGTTTGTGATGTTGTGATTGATTATGGGTCAAAATGCAAACATGCAAAAATTTAAGGATTT
130 TGTGT-TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
*
413592 GGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAG-TCGAAACATGATCAACCATTTTGGCATG
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCT-GAAACATGATCAACCATTTTGGCATG
* * * *
413656 TTTTTCTTGTTGATTTGAAATTAATTTAGATGCATTAAGAGGCGTTTGCATGAGAAAATTCTTGT
258 TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGAAGAGGTGTTTGCATGAGAAAATTCTTGT
* * * * *
413721 AAAAGTAGGTGAAATATCATTGCATGTAATTATATCA-AATGCCGAATTGTTGAGTTGCAAATCA
323 AAAAGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCA
* * * * *
413785 TTTATATAGCTTTGTCGAATCTGTTTGAATTTGATAAAGATGATATTGTGCTTATTTTCGCCTTC
388 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTG
*
413850 ATTTCTTGATTTATAAGCTATTTAACT-AGATTT
453 ATTTCTTGATTTATAAGTTATTTAA-TGAGATTT
* * *
413883 GAAATTATAGGG-TTGAAATTG-AGAAAATGAAAAGTCATGCTTTATGGCCAAAAGT-TAGTGAT
1 GAAATTATAGGGATT-AAATTGCA-AAAATGAAAAGTCATGCTTTATGGCCAAAACTAT-TTGAC
* * *
413945 CTAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGAT
63 CGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGAT
* * * * * *
414010 TATGCGTTTTTAAGATGCTGTAATTGATTAGCGGTAAAAATGCAAATATGCAAAAATTTAAGGAC
128 TATGTG-TTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGAC
414075 TTGGTTGCA
192 TTGGTTGCA
414084 GAAATATAAG
Statistics
Matches: 1881, Mismatches: 218, Indels: 71
0.87 0.10 0.03
Matches are distributed among these distances:
475 2 0.00
476 86 0.05
477 111 0.06
478 167 0.09
479 45 0.02
480 1 0.00
481 4 0.00
482 4 0.00
483 20 0.01
484 160 0.09
485 440 0.23
486 457 0.24
487 293 0.16
488 89 0.05
489 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (485 bp):
GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAT
GTGTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGG
TTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGTTT
TTCTTGCTGATTTGAAATTAATTTAGATGCGTGAAGAGGTGTTTGCATGAGAAAATTCTTGTAAA
AGTAGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTT
AGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATT
TCTTGATTTATAAGTTATTTAATGAGATTT
Found at i:414254 original size:197 final size:197
Alignment explanation
Indices: 413912--414280 Score: 562
Period size: 197 Copynumber: 1.9 Consensus size: 197
413902 TGAGAAAATG
* * * *
413912 AAAAGTCATGCTTTATGGCCAAAAGTTAGTGATCTAGCCTTGTAAAGGATTTTTTTCCATGATTT
1 AAAAGTCATGCTCTATGGCCAAAACTTAGTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTT
*
413977 GTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATGCGTTTTTAAGATGCTGTAATTGATTAGC
66 GTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATACGTTTTTAAGATGCTGTAATTGATTAGC
*
414042 GGTAAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCA
131 GGTAAAAACGCAAATATGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCA
414107 AA
196 AA
*
414109 AAAAGTCATGCTCTATGGCCAAAAC-TATTTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATT
1 AAAAGTCATGCTCTATGGCCAAAACTTA-GTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATT
* * * * * *
414173 TGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATATG-TTTTAATGATGTTGTGATTGATTA
65 TGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATACGTTTTTAA-GATGCTGTAATTGATTA
* * *
414237 GGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTGGTTGCA
129 GCGGTAAAAACGCAAATATGCAAAAATTTAAGGACTTGGTTGCA
414281 AAGTTTGTTC
Statistics
Matches: 154, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
196 8 0.05
197 146 0.95
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (197 bp):
AAAAGTCATGCTCTATGGCCAAAACTTAGTGACCGAGCCTTGTAAAGGATTTTTTTCCATGATTT
GTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATACGTTTTTAAGATGCTGTAATTGATTAGC
GGTAAAAACGCAAATATGCAAAAATTTAAGGACTTGGTTGCAGAAATATAAGGATTAAATTGCCA
AA
Found at i:416614 original size:485 final size:486
Alignment explanation
Indices: 415649--419476 Score: 5326
Period size: 485 Copynumber: 7.9 Consensus size: 486
415639 TATCTGCGTG
* * * *
415649 TTTATAATGCTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTTAGGACTTGGATGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* * * * *
415714 AAAGTTTGTTCCATGAAATTTCTTGTTT-GGTCGAAACGTGATCAACCATTTTGGCCTGTCTTTC
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCT-GAAACATGATCAACCATTTTGGCATGTTTTTC
* * * *
415778 TTGCCGATTTGAAATTAATTTAGATGCGTGTTGAGCTATTTGCATGAG-AAATTCTTGTAAAAGT
130 TTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * * * * * * * *
415842 TGGTGAAATTTTAGTGCTTGTATTCGAATCATGGTGCTGAGTTGTTGAGTTGCAAACCCTTTAGA
195 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGA
* * *
415907 TACCTTGGTCGAATCTGTTTAAAATTAATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
260 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* *
415972 TGATTTATAAGTTA-TTAATGAGATTTGAAATTATATGGATTAAATTGCGAAAATGAAAAGTCAT
325 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCAT
* * *
416036 GCTTTATCGCCAAAAGTATTTGACCGAGCCTTGTAAAGTA-TTTTTTCCATGATTTGTGGATGGT
390 GCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGT
*
416100 TCCAAGCTAATTTGGTGATTT-AGTTATGTGTT
455 TCCAAGCTGATTTGGTGATTTGA-TTATGTGTT
* **
416132 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGCTCAC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* *
416197 ATAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
* *
416262 TGCTGATTTGAAAATAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTA
131 TGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
*
416327 GATGAAATTTCATTGCATGTATTTGTA-CAATGATGCTGAATTGTTGAGTTGCAAATCATTTAGA
196 GGTGAAATTTCATTGCATGTATTTGTATC-ATGATGCTGAATTGTTGAGTTGCAAATCATTTAGA
* * * *
416391 TAACTTGGTCTAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTAATTTCT
260 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* * *
416456 TGATTTATAAGTTATTTAAGGAGATTTGAAATTATAGGGATTAAATTGTAAAAATGAAATGTCAT
325 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCAT
* * * * *
416521 GCCTTATCGCCAAAAGTATTTGATCAAGCCTTGTAAAAGA-TTTTTTCCATGATTTTTGGATGGT
390 GCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGT
* * *
416585 TCCAAACTGATTTGGTGATTAGATTATGTGTG
455 TCCAAGCTGATTTGGTGATTTGATTATGTGTT
* * * * *
416617 TTTAAGATGTTGTGATTGATTATGAGTCAAAATGAAAATATGCAAAAATTTAAGGATTTGGTTGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* * *
416682 AAAGTTTGTTCCATGAAATTTCTTATCTAGCCGAAACATGATCAACCATTTTGGCATATTTTTCT
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
* * * * * * *
416747 TGCTAATTTGAAATTAATTTAGATGCATTAAGAGGTGTTCGCTTAAGAAAATTCTTGTAAAAGTA
131 TGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
* * * *
416812 AGTGAAATATCATTGCATGTAATTGTATCATGATG-TCGAATTATTGAGTTGCAAATCATTTAGA
196 GGTGAAATTTCATTGCATGTATTTGTATCATGATGCT-GAATTGTTGAGTTGCAAATCATTTAGA
*
416876 TAACTTGGTCGAATCTGTTTGAAATTGATAAAGATG--ATTGTGCTTATTTTTGCCTTGATTTCT
260 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* * * * * *
416939 TAATTTATATGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTTCAAGAATGAAAAGTCAT
325 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCAT
* * *
417004 GCCTTATGGCCGAAAGTATTTGATCTAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGA----
390 GCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGT
*
417065 TCCAAGCTGATTTAGTGATTTGA-T-TGTGTT
455 TCCAAGCTGATTTGGTGATTTGATTATGTGTT
* *
417095 TTTATGATGTTGT-ATTTGATTAGGGGTCAAAATCCAAATATGCAAAAATTTAAGGACTTTGTTG
1 TTTATGATGTTGTGA-TTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTG
* * * **
417159 CAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATAAACCAATTTAACATGTTTTTC
65 CAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTC
* * *
417224 TTGCTGATTTG------A---A-ATGCGTGATGAGGTGTTTGCATGGGAAAATTCTTATAAAAGC
130 TTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
*
417279 AAGTGAAATTTCATTGCATGTATTTGTATCATGATGCT-AATTTGTTGAGTTGCAAATCA-TT-G
195 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAA-TTGTTGAGTTGCAAATCATTTAG
* * *
417341 ATAGCTTGGTCGAATCTATTTGAAATTGATATAGATGATATTGTGCATATTTTTGCCTTGATTTC
259 ATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTC
* * ** * *
417406 TTCATTTATAGGTTATTTAAAAAGATTTGAAATTATAGGGATTAAATTGTAAAAATGAAAATTCA
324 TTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCA
* * *
417471 TGCTTGATGGACAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTTCCATGATTTGTGTGG
389 TGCTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGA--TTTTTTTCCATGA-TT-TGTGG
** * * * *
417536 ATGGTTCCAAATTGATTTGGGGATTTAATTTTGTGTG
450 ATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTT
* * *
417573 TTTATGATGTTGTGATTGATTATGGGTTAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* * ** *
417638 CATGTTTGTTCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCCTGTTTTTCT
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
* *
417703 TGCTGATTTGAAATTAATTTAGATTCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTA
131 TGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
* * * *
417768 GGTGAAATTTCATTGCATGTATTCGTATCATGCTGCTGAATTGTTGAGTTACAAATGATTTAGAT
196 GGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGAT
* *
417833 AGCTTGGTTGAATCTGTTTGAAACTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTT
261 AGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTT
*
417898 GACTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATG
326 GATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATG
* * * *
417963 CTTTATGGCCAAAACTATTTGACCGAGCTTTGTAAATGATTTTTTTCCATGATTTGTGGATGGTT
391 CTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTT
*
418028 CCAAGCTGATTTGGT-ATTTTGATTATGTGCT
456 CCAAGCTGATTTGGTGA-TTTGATTATGTGTT
* * *
418059 TTAATGATGTTATGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGGCTTGGTTGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* * *
418124 AAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACAAATTTGGCATGTTTTTCT
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
* * *
418189 TGCTGATTTGAAATTAATTTAGATGCATG-TTACGGTGTTTGAATGAGAAAATTCTTGTAAAAGT
131 TGCTGATTTGAAATTAATTTAGATGCGTGATGA-GGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * *
418253 AGGTAAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTACAAATCATTAAGA
195 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGA
* * *
418318 TAGCTTGGTCGAATCTGTTTGAAAATGATAATGACGATATTGTGCTTATTTTTGCCTTGATTTCT
260 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
*
418383 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTACAAAAATGAAAAGTCAT
325 TGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCAT
* * * **
418448 GCTTT-TGGCCTAAACTATTTGA-CTGAGCCTTGTCAAGGATTTTTTTTAATGATTTGTGGATGG
390 GCTTTATGGCCAAAAGTATTTGATC-GAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGG
* * * *
418511 TTTCAAACTGATTTGGTGATTAGATTATGTGTG
454 TTCCAAGCTGATTTGGTGATTTGATTATGTGTT
* * * *
418544 TTTGTGATGTTGTGATTGATTATGGGTCAAAATGCAAACATGCAAAAATTTAAGGATTTGGTTGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
418609 AAAGTTTGTTCCATGAAATTTCTTATTTAG-TCGAAACATGATCAACCATTTTGGCATGTTTTTC
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCT-GAAACATGATCAACCATTTTGGCATGTTTTTC
* * * * *
418673 TTGTTGATTTGAAATTAATTTAGATGCATTAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGT
130 TTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGT
* * * * * *
418738 AGGTGAAATATCATTGCATGTAATTATATCA-AATGCCGAATTGTTGAGTTGCAAATCATTTATA
195 AGGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGA
* * * *
418802 TAGCTTTGTCGAATCTGTTTGAATTTGATAAAGATGATATTGTGCATATTTTCGCCTTGATTTCT
260 TAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCT
* *
418867 TGATTTATAAGCTATTTAACT-AGATTTGAAATTATAGGGATGAAATTG-AGAAAATGAAAAGTC
325 TGATTTATAAGTTATTTAA-TGAGATTTGAAATTATAGGGATTAAATTGCA-AAAATGAAAAGTC
*
418930 ATGCTTTATGGCCAAAAGT-TATTGATCTAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGAT
388 ATGCTTTATGGCCAAAAGTAT-TTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGAT
* * *
418994 GGTTCCAAGCTAATTTAGTGATTTGATTATGCGTT
452 GGTTCCAAGCTGATTTGGTGATTTGATTATGTGTT
* * * *
419029 TTTATGATGCTGTAATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTTAGGACTTGGTTGC
1 TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
* * *
419094 AAAGTTTGTTCCATTAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTTGCATGTTTTTCT
66 AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
* * * * *
419159 TGCTGATTTGAAATTAATTTAGATGCATTAAGAGGTGTTTGCATGGGAATATTCTTGTAAAAGTA
131 TGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
* * *
419224 GGTGAAATATCATTGCATGTAATTGTATCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGAT
196 GGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGAT
*
419289 AGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGTCTTGATTTCTT
261 AGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTT
* * *
419354 GATTTGTAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTG-AAAAATTGAAAAGTCAT
326 GATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAA-TGAAAAGTCAT
*
419418 GCTTTATGGCCAAAAGT-TTATGATCTAGCCTTGTAAAGGATTTTTTTCCATGATGTTGT
390 GCTTTATGGCCAAAAGTATT-TGATCGAGCCTTGTAAAGGATTTTTTTCCATGAT-TTGT
419477 AATTGATTAG
Statistics
Matches: 2976, Mismatches: 315, Indels: 104
0.88 0.09 0.03
Matches are distributed among these distances:
466 35 0.01
467 4 0.00
468 201 0.07
469 2 0.00
470 13 0.00
471 2 0.00
472 7 0.00
476 18 0.01
477 2 0.00
478 259 0.09
479 2 0.00
480 20 0.01
483 275 0.09
484 316 0.11
485 958 0.32
486 597 0.20
487 7 0.00
488 101 0.03
489 4 0.00
490 153 0.05
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (486 bp):
TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGC
AAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGGCATGTTTTTCT
TGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATGAGAAAATTCTTGTAAAAGTA
GGTGAAATTTCATTGCATGTATTTGTATCATGATGCTGAATTGTTGAGTTGCAAATCATTTAGAT
AGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTT
GATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATG
CTTTATGGCCAAAAGTATTTGATCGAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTT
CCAAGCTGATTTGGTGATTTGATTATGTGTT
Found at i:419075 original size:970 final size:968
Alignment explanation
Indices: 414084--419476 Score: 7064
Period size: 970 Copynumber: 5.6 Consensus size: 968
414074 CTTGGTTGCA
* ** * *
414084 GAAA-TATAAGGATTAAATTGCCAAA--AAAAGTCATGCTCTATGGCCAAAACTATTTGACCGAG
1 GAAATTATAGGGATTAAATTGAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAG
* * * *
414146 CCTTGTAAAGGATTTTTTTCCATGATTTGTGGATTGTTCCAAGCTGATTTGGTGATTTGATTATA
66 CCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATG
* * * *
414211 TGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAACGCAAATATGGAAAAATTTAAGGACTTGG
131 TGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGG
** * * *
414276 TTGCAAAGTTTGTTCTTTGAACTTTCATATTTAGCTGAAACATGATCAACCAATTTGGCAAGTTT
196 TTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGTTT
* * * * *
414341 TTCTTGCTGATTTGAAATTAATTTTGATGCGTGATGAGGTGTTT-ACGTAAGAAAATTCTTATAA
261 TTCTTGCTGATTTGAAATTAATTTAGATGCATG-T-AGGTGTTTGA-ATGAGAAAATTCTTGTAA
* *
414405 AAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCAGAATTGTTGAGTTGCAACTCATT
323 AAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATCATT
* *
414470 TAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTCCCTTGAT
388 TAGATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTGAT
* * * * ** *
414535 TTCTTGATTTATAAGCTATTTAACGAGATTTGAAATTATAGGGATGAAACTGCAAAAAAGAAAAG
453 TTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAAAG
* * * * * * * *
414600 TCATGCTTTATGGCCAAAAGTATTTGATCTATCCTTGTAAAAGACTTTTCTCCATGATTTCTAGA
518 TCATGC-TTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTCATGATTTGTGGA
* * * * * * *
414665 TGGTTCCAAGCTGATTTAGTGATTTGA-T-TGTGTG----T--T-TTGTAACTAATTAGGGGTCA
582 TGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCA
* * * *
414721 AAAT-CTAAATAGGCAAAAATTTTAA-GACTTGGTTGCAAAGTTTGCTGCATGAAATTTCTTATT
647 AAATGC-AAATATGCAAAAA-TTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATT
* * * * *
414784 TAGCCGAAACATGATCAGCCATTTTAGCATGTTTTTCTTGCTGCTTTGATATTAATTTAGATGCG
710 TAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCA
* * * * * * * ****
414849 TGATGAGGTGTTTGCATGAGAAAGTTCTTGTAAAGGTAGGTGAAATTTCGTTGCATGTATTTGCG
775 TTAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTATTCATA
* * * * *
414914 TCATGATGCTGATTTGTTGAGTTGCAAATCATTTAGATGGCTTGGTCGAATCTATTTGAAATTTA
840 TCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGA
* * *
414979 TAAAGATGATATTGTGCTAATCTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTT
905 TAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGATTT
* * *
415043 GAAATTTTAGGGATTAAATTGCAAAAGTGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTG-AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGA
* * * * *
415108 GCCTTGTAAAGTATTTTTTTTCCATGATTTGTGGATGGTTGCAAGCTGATTTGGTGATTTGATTT
65 GCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTA
* * * *
415173 TGTGTTTTAATGATGTTGTGATTAATTAGGCGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
129 TGTGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
* * *
415238 GGTTGCAAAGTTTGTTCCATGAAATATCATATTTAGCTGAAACCTGATCAACCAATTTGGCGA-G
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGC-ATG
* * * *
415302 CTTTTCTTGCTAATTTGAAATTAATTTAGATGCGTAATG-AGGTGTTTGCATGAGAAAATTCATG
258 TTTTTCTTGCTGATTTGAAATTAATTTAGATGC---ATGTAGGTGTTTGAATGAGAAAATTCTTG
* * * *
415366 TAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTAAGTTGCAAATC
320 TAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATC
* * * *
415431 ATTTAGGTAGCTTGGTTGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTT
385 ATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTT
* * * *
415496 GATTTCTTGATTTATAAGGTATTTAATGAGATTTAAAATTATAGGGATTAAATTACAAAAATGAA
450 GATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAA
* * * * * * *
415561 AAGTCATGCTTTAAGGCCAAAACTATTAGACCGAGCGTTGTAAAGGACTTTTTTTCCATGATTTG
515 AAGTCATGC-TTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGA-TTTTTTTTCATGATTTG
* * * * *
415626 TGGATGG--------T-A-----TGATT--A-TCTGCGTGTTTATAATGCTGTGATTGATTAGGG
578 TGGATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGTTGTGATTGATTATGG
* * * *
415674 GTCAAAATGCAAATATGCAAAAATTTTAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTG
643 GTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTA
* * * * * *
415739 TTTGGTCGAAACGTGATCAACCATTTTGGCCTGTCTTTCTTGCCGATTTGAAATTAATTTAGATG
708 TTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATG
* * * * * * * *
415804 CGTGT-TGA-GCTATTTGCATGAG-AAATTCTTGTAAAAGTTGGTGAAATTTTAGTGCTTGTATT
773 CAT-TAAGAGGC-GTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTATT
* * * * * * *
415866 CGA-ATCATGGTGCTGAGTTGTTGAGTTGCAAACCCTTTAGATACCTTGGTCGAATCTGTTTAAA
836 C-ATATCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAA
* *
415930 ATTAATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTA-TTAATGAG
900 ATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAG
415994 ATTT
965 ATTT
* * *
415998 GAAATTATATGGATTAAATTGCGAAAATGAAAAGTCATGCTTTATCGCCAAAAGTATTTGACCGA
1 GAAATTATAGGGATTAAATTG-AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGA
* *
416063 GCCTTGTAAAGTA-TTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTGGTGATTT-AGTTA
65 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGA-TTA
*
416126 TGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
129 TGTGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
* ** * * *
416191 GCTCACATAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACCATTTTGGCATGT
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGT
* *
416256 TTTTCTTGCTGATTTGAAAATAATTTAGATGCGTGATGAGGTGTTTGCAA-GAGAAAATTCTTGT
259 TTTTCTTGCTGATTTGAAATTAATTTAGATGCATG-T-AGGTGTTTG-AATGAGAAAATTCTTGT
* *
416320 AAAAGTAGATGAAATTTCATTGCATGTATTTGTACAATGATGCTGAATTGTTGAGTTGCAAATCA
321 AAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATCA
* * *
416385 TTTAGATAACTTGGTCTAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTA
386 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTG
* *
416450 ATTTCTTGATTTATAAGTTATTTAAGGAGATTTGAAATTATAGGGATTAAATTGTAAAAATGAAA
451 ATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAA
* * * * *
416515 TGTCATGCCTTATCGCCAAAAGTATTTGATCAAGCCTTGTAAAAGA-TTTTTTCCATGATTTTTG
516 AGTCATG-CTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTCATGATTTGTG
* *
416579 GATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTAAGATGTTGTGATTGATTATGAGT
580 GATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGT
* *
416644 CAAAATGAAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATC
645 CAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATT
* *
416709 TAGCCGAAACATGATCAACCATTTTGGCATATTTTTCTTGCTAATTTGAAATTAATTTAGATGCA
710 TAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCA
* * * * * *
416774 TTAAGAGGTGTTCGCTTAAGAAAATTCTTGTAAAAGTAAGTGAAATATCATTGCATGTAATT-GT
775 TTAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGT-ATTCAT
* * *
416838 ATCATGATGTCGAATTATTGAGTTGCAAATCATTTAGATAACTTGGTCGAATCTGTTTGAAATTG
839 ATCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTG
* * *
416903 ATAAAGATG--ATTGTGCTTATTTTTGCCTTGATTTCTTAATTTATATGCTATTTAACGAGATTT
904 ATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGATTT
* * * * * *
416966 GAAATTATAGGGATTAAATTTCAAGAATGAAAAGTCATGCCTTATGGCCGAAAGTATTTGATCTA
1 GAAATTATAGGGATTAAA-TTGAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGA
*
417031 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGA----TCCAAGCTGATTTAGTGATTTGA-T-T
65 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTAT
* * *
417090 GTGTTTTTATGATGTTGTATTTGATTAGGGGTCAAAATCCAAATATGCAAAAATTTAAGGACTTT
130 GTGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
* * **
417155 GTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATAAACCAATTTAACATGTT
195 GTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGTT
** * * *
417220 TTTCTTGCTGATTTG--A--AA-TGCG-TG-ATG-AGGTGTTTGCATGGGAAAATTCTTATAAAA
260 TTTCTTGCTGATTTGAAATTAATTTAGATGCATGTAGGTGTTTGAATGAGAAAATTCTTGTAAAA
* * *
417277 GCAAGTGAAATTTCATTGCATGTATTTGTATCATGATGCT-AATTTGTTGAGTTGCAAATCA-TT
325 GTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAA-TTGTTGAGTTGCAAATCATTT
* *
417340 -GATAGCTTGGTCGAATCTATTTGAAATTGAT-ATAGATGATATTGTGCATATTTTTGCCTTGAT
389 AGATAGCTTGGTCGAATCTGTTTGAAATTGATAAT-GATGATATTGTGCTTATTTTTGCCTTGAT
* * * * *
417403 TTCTTCATTTATAGGTTATTTAAAAAGATTTGAAATTATAGGGATTAAATTGTAAAAATGAAAAT
453 TTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAAAG
*
417468 TCATGCTTGATGGACAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTTCCATGATTTGTG
518 TCATGCTT-ATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGA-TTTTTTTT-CATGA-TT-TG
* * *
417533 TGGATGGTTCCAAATTGATTTGGGGATTTA-ATTTTGTGTGTTTATGATGTTGTGATTGATTATG
578 TGGATGGTTCCAAACTGATTTGGTGA-TTAGATTATGTGTGTTTATGATGTTGTGATTGATTATG
* * *
417597 GGTTAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCCATGTTTGTTCCATGAAATTTCTT
642 GGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTT
* *
417662 ATTTAGCCAAAACATGATCAACCATTTTGGCCTGTTTTTCTTGCTGATTTGAAATTAATTTAGAT
707 ATTTAGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGAT
* * * * * * *
417727 TCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTC
772 GCATTAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTATTC
* * * * * * *
417792 GTATCATGCTGCTGAATTGTTGAGTTACAAATGATTTAGATAGCTTGGTTGAATCTGTTTGAAAC
837 ATATCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAAT
* *
417857 TGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGACTTATAAGTTATTTAATGAGAT
902 TGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGAT
417922 TT
967 TT
*
417924 GAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGACCGA
1 GAAATTATAGGGATTAAATTG-AAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGA
* * * *
417989 GCTTTGTAAATGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGT-ATTTTGATTA
65 GCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGA-TTTGATTA
* * * * *
418053 TGTGCTTTAATGATGTTATGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGGCTT
129 TGTGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
* *
418118 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGATCAACAAATTTGGCATGT
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGT
418183 TTTTCTTGCTGATTTGAAATTAATTTAGATGCATGTTACGGTGTTTGAATGAGAAAATTCTTGTA
259 TTTTCTTGCTGATTTGAAATTAATTTAGATGCATG-TA-GGTGTTTGAATGAGAAAATTCTTGTA
* *
418248 AAAGTAGGTAAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTACAAATCAT
322 AAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATCAT
* * *
418313 TAAGATAGCTTGGTCGAATCTGTTTGAAAATGATAATGACGATATTGTGCTTATTTTTGCCTTGA
387 TTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTGA
* *
418378 TTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTACAAAAATGAAAA
452 TTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAAA
* * * * * *
418443 GTCATGCTTTTGGCCTAAACTATTTGA-CTGAGCCTTGTCAAGGATTTTTTTTAATGATTTGTGG
517 GTCATGCTTATGGCCAAAAGTATTTGATC-AAGCCTTGTAAAGGATTTTTTTTCATGATTTGTGG
* *
418507 ATGGTTTCAAACTGATTTGGTGATTAGATTATGTGTGTTTGTGATGTTGTGATTGATTATGGGTC
581 ATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTC
*
418572 AAAATGCAAACATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTT
646 AAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTT
* *
418637 AGTCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGTTGATTTGAAATTAATTTAGATGCAT
711 AGCCGAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCAT
418702 TAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTAATT-ATA
776 TAAGAGGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGT-ATTCATA
* * * *
418766 TCA-AATGCCGAATTGTTGAGTTGCAAATCATTTATATAGCTTTGTCGAATCTGTTTGAATTTGA
840 TCATGATGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGA
* *
418830 TAAAGATGATATTGTGCATATTTTCGCCTTGATTTCTTGATTTATAAGCTATTTAACT-AGATTT
905 TAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAA-TGAGATTT
* * *
418894 GAAATTATAGGGATGAAATTGAGAAAATGAAAAGTCATGCTTTATGGCCAAAAGT-TATTGATCT
1 GAAATTATAGGGATTAAATTGA-AAAATGAAAAGTCATGCTTTATGGCCAAAAGTAT-TTGACCG
418958 AGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTA
64 AGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTA
* * * *
419023 TGCGTTTTTATGATGCTGTAATTGATTAGCGGTCAAAATGCAAATATGCAAAAATTTTAGGACTT
129 TGTGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTT
* * * *
419088 GGTTGCAAAGTTTGTTCCATTAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTTGCATGT
194 GGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGT
* * *
419153 TTTTCTTGCTGATTTGAAATTAATTTAGATGCAT-TAAGAGGTGTTTGCATGGGAATATTCTTGT
259 TTTTCTTGCTGATTTGAAATTAATTTAGATGCATGT---AGGTGTTTGAATGAGAAAATTCTTGT
* * * *
419217 AAAAGTAGGTGAAATATCATTGCATGTAATTGTATCATGATGCCGAATTGTTGAGTTGCAAATCA
321 AAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATCA
* *
419282 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGTCTTG
386 TTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTG
* * * *
419347 ATTTCTTGATTTGTAAGCTATTTAACGAGATTTGAAATTATAGGGATTAAATTGA-AAAATTGAA
451 ATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATT-ATAAAAATGAA
* *
419411 AAGTCATGCTTTATGGCCAAAAGT-TTATGATCTAGCCTTGTAAAGGATTTTTTTCCATGATGTT
515 AAGTCATGC-TTATGGCCAAAAGTATT-TGATCAAGCCTTGTAAAGGATTTTTTTTCATGAT-TT
419475 GT
577 GT
419477 AATTGATTAG
Statistics
Matches: 3895, Mismatches: 432, Indels: 201
0.86 0.10 0.04
Matches are distributed among these distances:
949 2 0.00
950 12 0.00
951 178 0.05
952 7 0.00
953 510 0.13
954 8 0.00
955 89 0.02
956 442 0.11
957 143 0.04
958 139 0.04
959 7 0.00
960 15 0.00
961 4 0.00
962 20 0.01
963 180 0.05
964 564 0.14
965 45 0.01
966 2 0.00
967 42 0.01
968 232 0.06
969 122 0.03
970 591 0.15
971 284 0.07
972 10 0.00
973 5 0.00
974 88 0.02
975 30 0.01
976 122 0.03
977 2 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.39
Consensus pattern (968 bp):
GAAATTATAGGGATTAAATTGAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAG
CCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTAGTGATTTGATTATG
TGTTTTTATGATGTTGTAATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGG
TTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCCGAAACATGATCAACCAATTTGGCATGTTT
TTCTTGCTGATTTGAAATTAATTTAGATGCATGTAGGTGTTTGAATGAGAAAATTCTTGTAAAAG
TAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGTTGAGTTGCAAATCATTTAG
ATAGCTTGGTCGAATCTGTTTGAAATTGATAATGATGATATTGTGCTTATTTTTGCCTTGATTTC
TTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTATAAAAATGAAAAGTCA
TGCTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTCATGATTTGTGGATGGT
TCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAAT
GCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCG
AAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATTAAGA
GGCGTTTGCATGAGAAAATTCTTGTAAAAGTAGGTGAAATATCATTGCATGTATTCATATCATGA
TGCCGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGA
TGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGCTATTTAATGAGATTT
Found at i:421768 original size:22 final size:20
Alignment explanation
Indices: 421729--421771 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
421719 GGCTCCCGTT
*
421729 AAAAAATTTTTCTTTTGATA
1 AAAAAATTTTTCTCTTGATA
421749 AAAAAATTTCTTCCTCTTGATA
1 AAAAAATTT-TT-CTCTTGATA
421771 A
1 A
421772 TCGGTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 9 0.45
21 2 0.10
22 9 0.45
ACGTcount: A:0.40, C:0.12, G:0.05, T:0.44
Consensus pattern (20 bp):
AAAAAATTTTTCTCTTGATA
Found at i:423536 original size:22 final size:21
Alignment explanation
Indices: 423501--423550 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
423491 TTTGTTGATC
*
423501 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
423521 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
423542 AATTTGAAG
1 ATTTTGAAG
423551 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:423547 original size:21 final size:22
Alignment explanation
Indices: 423508--423550 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
423498 ATCATTTTGA
* *
423508 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
423530 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
423551 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:425282 original size:13 final size:13
Alignment explanation
Indices: 425264--425290 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
425254 ACATGCTGCT
425264 TTGTATCGATACA
1 TTGTATCGATACA
425277 TTGTATCGATACA
1 TTGTATCGATACA
425290 T
1 T
425291 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:425305 original size:32 final size:33
Alignment explanation
Indices: 425245--425309 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 33
425235 CACACCCAGA
* *
425245 TGTATTGATACATGCTGCTTTGTATCGATACAT
1 TGTATCGATACATGCTGCATTGTATCGATACAT
*
425278 TGTATCGATACATG-TTCATTGTATCGATACAT
1 TGTATCGATACATGCTGCATTGTATCGATACAT
425310 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.26, C:0.15, G:0.17, T:0.42
Consensus pattern (33 bp):
TGTATCGATACATGCTGCATTGTATCGATACAT
Found at i:425320 original size:20 final size:19
Alignment explanation
Indices: 425274--425330 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 19
425264 TTGTATCGAT
*
425274 ACATTGTATCGATACATGT
1 ACATTGTATCGATACATGG
*
425293 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
425312 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
425331 AAACTGGCAG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 18 0.53
20 16 0.47
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:425385 original size:20 final size:20
Alignment explanation
Indices: 425360--425397 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
425350 TATCAGTATT
425360 TGTATCAATACATGGTATAA
1 TGTATCAATACATGGTATAA
* *
425380 TGTATCGATACATTGTAT
1 TGTATCAATACATGGTAT
425398 CGATACATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (20 bp):
TGTATCAATACATGGTATAA
Found at i:425396 original size:13 final size:13
Alignment explanation
Indices: 425380--425405 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
425370 CATGGTATAA
425380 TGTATCGATACAT
1 TGTATCGATACAT
425393 TGTATCGATACAT
1 TGTATCGATACAT
425406 GAAGAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:425404 original size:33 final size:32
Alignment explanation
Indices: 425359--425425 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 32
425349 CTATCAGTAT
425359 TTGTATCAATACATG-GTATAATGTATCGATACA
1 TTGTATCAATACATGAG-A-AATGTATCGATACA
*
425392 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCAATACATG-AGAAATGTATCGATACA
425425 T
1 T
425426 GAAGAAATGT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.34
Consensus pattern (32 bp):
TTGTATCAATACATGAGAAATGTATCGATACA
Found at i:425416 original size:20 final size:20
Alignment explanation
Indices: 425393--425445 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
425383 ATCGATACAT
425393 TGTATCGATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
425413 TGTATCGATACATGAAGAAA
1 TGTATCGATACATGAAGAAA
425433 TGTATCGATACAT
1 TGTATCGATACAT
425446 AGCTTATAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (20 bp):
TGTATCGATACATGAAGAAA
Found at i:431610 original size:13 final size:13
Alignment explanation
Indices: 431592--431620 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
431582 ACAACATTCC
431592 TTGTATCGATACA
1 TTGTATCGATACA
431605 TTGTATCGATACA
1 TTGTATCGATACA
431618 TTG
1 TTG
431621 GGTACTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:433494 original size:22 final size:22
Alignment explanation
Indices: 433469--433521 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 22
433459 GATTTTTACA
*
433469 TAAGGGGGAGAAGATAATTGTT
1 TAAGGGGGAGAAGATAATCGTT
433491 TAA-GGGG-G-AGATAATCGTT
1 TAAGGGGGAGAAGATAATCGTT
*
433510 TAAGAGGGAGAA
1 TAAGGGGGAGAA
433522 TTTTTTTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 13 0.50
20 4 0.15
21 5 0.19
22 4 0.15
ACGTcount: A:0.38, C:0.02, G:0.38, T:0.23
Consensus pattern (22 bp):
TAAGGGGGAGAAGATAATCGTT
Found at i:433504 original size:19 final size:19
Alignment explanation
Indices: 433480--433533 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 19
433470 AAGGGGGAGA
433480 AGATAATTGTTTAAGGGGG
1 AGATAATTGTTTAAGGGGG
* *
433499 AGATAATCGTTTAAGAGGG
1 AGATAATTGTTTAAGGGGG
* *
433518 AGA-ATTTTTTTAAGGG
1 AGATAATTGTTTAAGGG
433534 AGAAAAATGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
18 9 0.31
19 20 0.69
ACGTcount: A:0.33, C:0.02, G:0.31, T:0.33
Consensus pattern (19 bp):
AGATAATTGTTTAAGGGGG
Found at i:434113 original size:20 final size:21
Alignment explanation
Indices: 434083--434123 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
434073 GCTCTATATC
434083 GATACATTGTATCGATACATG
1 GATACATTGTATCGATACATG
434104 GATA-ATTGTATCGATACATG
1 GATACATTGTATCGATACATG
434124 AAACTGGCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (21 bp):
GATACATTGTATCGATACATG
Found at i:434189 original size:13 final size:13
Alignment explanation
Indices: 434168--434198 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
434158 CGATACATGG
*
434168 TACAATGTATCGA
1 TACATTGTATCGA
434181 TACATTGTATCGA
1 TACATTGTATCGA
434194 TACAT
1 TACAT
434199 GAAGAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:434194 original size:33 final size:32
Alignment explanation
Indices: 434152--434218 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 32
434142 CTATCACTAT
434152 TTGTATCGATACATG-GTACAATGTATCGATACA
1 TTGTATCGATACATGAG-A-AATGTATCGATACA
434185 TTGTATCGATACATGAAGAAATGTATCGATACA
1 TTGTATCGATACATG-AGAAATGTATCGATACA
434218 T
1 T
434219 AGCTTGTAAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (32 bp):
TTGTATCGATACATGAGAAATGTATCGATACA
Found at i:438729 original size:32 final size:33
Alignment explanation
Indices: 438688--438756 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
438678 GGCAGTAGCT
438688 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
438720 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
438753 TACA
1 TACA
438757 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:438730 original size:13 final size:13
Alignment explanation
Indices: 438712--438736 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
438702 ACAAAACTTA
438712 TGTATCGATACAT
1 TGTATCGATACAT
438725 TGTATCGATACA
1 TGTATCGATACA
438737 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:439432 original size:52 final size:49
Alignment explanation
Indices: 439355--439983 Score: 721
Period size: 52 Copynumber: 13.1 Consensus size: 49
439345 CTTAGGACTG
* *
439355 TTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
**
439404 TTAAAGATGACAAAGACGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
439456 TTAAAGATGACAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
439508 TTAAAGGTGCCAAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
*
439560 TTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGAC
1 TTAAAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
439612 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
439655 TTAAAAAATGAGGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGAC
1 TT-AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
439705 TT---G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
439748 TTAAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAA
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * *
439797 TT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
439840 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* * * *
439889 -T-----TGAAGGTGCCAATGTGCTAATTCAAGGCCAGCTATGTTGGAC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
* *
439932 TTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
439981 TTA
1 TTA
439984 GAAGGGTTGC
Statistics
Matches: 501, Mismatches: 51, Indels: 56
0.82 0.08 0.09
Matches are distributed among these distances:
43 149 0.30
44 2 0.00
45 1 0.00
46 1 0.00
47 1 0.00
48 4 0.01
49 121 0.24
50 37 0.07
52 185 0.37
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.24
Consensus pattern (49 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC
Found at i:439632 original size:43 final size:43
Alignment explanation
Indices: 439571--439988 Score: 422
Period size: 43 Copynumber: 9.1 Consensus size: 43
439561 TAAAGATGAC
*
439571 AAAGGTGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
439614 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
439657 AAAAAATGAGGGTGCCAATATGCTGATTTAAGGCCAGCGATATTGGACTT
1 ----AA--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
** * * *
439707 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
*
439750 AAAGATGATGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAATT
1 --A-A--A-GGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * *
439799 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
439842 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
* * * * *
439891 GAAGGTGCCAATGTGCTAATTCAAGGCCAGCTATGTTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T
*
439940 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
439983 AGAAGG
1 A-AAGG
439989 GTTGCCACCG
Statistics
Matches: 311, Mismatches: 38, Indels: 51
0.78 0.09 0.13
Matches are distributed among these distances:
43 149 0.48
44 7 0.02
46 1 0.00
47 4 0.01
48 2 0.01
49 112 0.36
50 36 0.12
ACGTcount: A:0.30, C:0.17, G:0.28, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
Found at i:439639 original size:21 final size:20
Alignment explanation
Indices: 439572--439639 Score: 50
Period size: 21 Copynumber: 3.2 Consensus size: 20
439562 AAAGATGACA
439572 AAGGTGCCAATATGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
* *
439593 AAGGCTAGCGATATTG--GACTTA
1 AAGG-T-GCCA-ATTGCTGA-TTC
439615 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAAT-TGCTGATTC
439636 AAGG
1 AAGG
439640 CCAGCGACAT
Statistics
Matches: 36, Mismatches: 4, Indels: 14
0.67 0.07 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.36
22 9 0.25
23 5 0.14
24 2 0.06
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.26
Consensus pattern (20 bp):
AAGGTGCCAATTGCTGATTC
Found at i:439806 original size:92 final size:92
Alignment explanation
Indices: 439519--439988 Score: 715
Period size: 92 Copynumber: 5.1 Consensus size: 92
439509 TAAAGGTGCC
* * * *
439519 AAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGACAAAGGTGCCAATA
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG---AAGGTGCCAATA
*
439584 TGCTGATTCAAGGCTAGCGATATTGGACTT
63 TGCTGATTCAAGGCCAGCGATATTGGACTT
* * * *
439614 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAAATGAGGGTGCCAATATG
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATGAAGGTGCCAATATG
*
439679 CTGATTTAAGGCCAGCGATATTGGACTT
65 CTGATTCAAGGCCAGCGATATTGGACTT
** *
439707 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
439772 TGATTCAAGGCCAGCGATATTGGAATT
66 TGATTCAAGGCCAGCGATATTGGACTT
439799 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
439864 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * ** *
439891 GAAGGTGCCAATGTGCTAATTCAAGGCCAGCTATGTTGGACTTAAAGATAAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
439956 TGATTCAAGGCCAGCGATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
439983 AGAAGG
1 A-AAGG
439989 GTTGCCACCG
Statistics
Matches: 346, Mismatches: 27, Indels: 6
0.91 0.07 0.02
Matches are distributed among these distances:
92 219 0.63
93 82 0.24
95 39 0.11
96 6 0.02
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:440025 original size:33 final size:32
Alignment explanation
Indices: 439976--440151 Score: 268
Period size: 32 Copynumber: 5.5 Consensus size: 32
439966 CCAGCGATAT
439976 TGGGC-TT-AGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
* * *
440006 TAGGCTTTAGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTT-GAGAAGGGTTGCCACCGACTTGTG
440039 TGGGCTTT-AGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGA-AGGGTTGCCACCGACTTGTG
440071 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
440103 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
1 TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
* *
440135 TAGGCTTTGAAAAGGGT
1 TGGGCTTTGAGAAGGGT
440152 GAAAGATGCC
Statistics
Matches: 133, Mismatches: 8, Indels: 8
0.89 0.05 0.05
Matches are distributed among these distances:
30 4 0.03
31 5 0.04
32 93 0.70
33 31 0.23
ACGTcount: A:0.19, C:0.18, G:0.35, T:0.28
Consensus pattern (32 bp):
TGGGCTTTGAGAAGGGTTGCCACCGACTTGTG
Found at i:440196 original size:33 final size:33
Alignment explanation
Indices: 440153--440411 Score: 182
Period size: 33 Copynumber: 7.6 Consensus size: 33
440143 GAAAAGGGTG
*
440153 AAAGATGCCACAAAGTTGTGGACTTAAAAGGAA
1 AAAGGTGCCACAAAGTTGTGGACTTAAAAGGAA
* ** *
440186 TAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAA
1 AAAGGTGCCACAAAGTTGTGGAC-TTAAAA-GGAA
* * ** *
440221 AAAGAGTGCCACAGAGTTGTGGGCTTTGAA--CA
1 AAAG-GTGCCACAAAGTTGTGGACTTAAAAGGAA
* * **
440253 GAAGGTGCCACGAAGTCATGGACTTTGAAAA-GAA
1 AAAGGTGCCACAAAGTTGTGGAC-TT-AAAAGGAA
* * * * *
440287 AAAGGCGCCACGAAGTCGTGGATTTTAAAGGAA
1 AAAGGTGCCACAAAGTTGTGGACTTAAAAGGAA
* *** *
440320 CAAGGTGCCACGGGGTTGTGGACTTTAAAGGAA
1 AAAGGTGCCACAAAGTTGTGGACTTAAAAGGAA
440353 CAAAGAGTGCCACAAAGTTGTGGACTTTAAAAGGGAA
1 -AAAG-GTGCCACAAAGTTGTGGAC-TTAAAA-GGAA
*
440390 AAAGAGTGCCACAGAGTTGTGG
1 AAAG-GTGCCACAAAGTTGTGG
440412 GCTTTGAAAA
Statistics
Matches: 179, Mismatches: 36, Indels: 19
0.76 0.15 0.08
Matches are distributed among these distances:
31 14 0.08
32 9 0.05
33 52 0.29
34 29 0.16
35 27 0.15
36 44 0.25
37 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (33 bp):
AAAGGTGCCACAAAGTTGTGGACTTAAAAGGAA
Found at i:440238 original size:36 final size:34
Alignment explanation
Indices: 440153--440454 Score: 200
Period size: 36 Copynumber: 8.9 Consensus size: 34
440143 GAAAAGGGTG
* * *
440153 AAAGATGCCACAAAGTTGTGGAC-TTAAAAGGAA
1 AAAGGTGCCACAGAGTTGTGGGCTTTAAAAGGAA
* *
440186 TAAGGTGCCACGGAGTTGTGGGCTTTAAAAGGGAA
1 AAAGGTGCCACAGAGTTGTGGGCTTTAAAA-GGAA
*
440221 AAAGAGTGCCACAGAGTTGTGGGCTTTGAACA-G--
1 AAAG-GTGCCACAGAGTTGTGGGCTTT-AAAAGGAA
** *
440254 -AAGGTGCCAC-GAAGTCATGGACTTTGAAAA-GAA
1 AAAGGTGCCACAG-AGTTGTGGGCTTT-AAAAGGAA
* * * *
440287 AAAGGCGCCAC-GAAGTCGT-GGATTTTAAAGGAA
1 AAAGGTGCCACAG-AGTTGTGGGCTTTAAAAGGAA
* * * *
440320 CAAGGTGCCACGGGGTTGTGGACTTT-AAAGGAA
1 AAAGGTGCCACAGAGTTGTGGGCTTTAAAAGGAA
* *
440353 CAAAGAGTGCCACAAAGTTGTGGACTTTAAAAGGGAA
1 -AAAG-GTGCCACAGAGTTGTGGGCTTTAAAA-GGAA
440390 AAAGAGTGCCACAGAGTTGTGGGCTTTGAAAA-G--
1 AAAG-GTGCCACAGAGTTGTGGGCTTT-AAAAGGAA
* * *
440423 -AAGGTGCCACGGAGTCGTGGACTTTAAGAAGG
1 AAAGGTGCCACAGAGTTGTGGGCTTTAA-AAGG
440455 TATTTGAAGA
Statistics
Matches: 219, Mismatches: 32, Indels: 37
0.76 0.11 0.13
Matches are distributed among these distances:
30 3 0.01
31 43 0.20
32 10 0.05
33 45 0.21
34 30 0.14
35 28 0.13
36 49 0.22
37 11 0.05
ACGTcount: A:0.34, C:0.14, G:0.32, T:0.20
Consensus pattern (34 bp):
AAAGGTGCCACAGAGTTGTGGGCTTTAAAAGGAA
Found at i:440325 original size:67 final size:68
Alignment explanation
Indices: 440254--440449 Score: 188
Period size: 67 Copynumber: 2.9 Consensus size: 68
440244 CTTTGAACAG
** *
440254 AAGGTGCCACGAAGTCATGGACTTTGAAAAGAAAAAGGCGCCACGAAGTCGTGGATTTTAAA-GG
1 AAGGTGCCACGAAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACGAAGTCGTGGATTTTAAAGGG
*
440318 AAC
66 AAA
** * * * *
440321 AAGGTGCCACGGGGTTGTGGACTTT-AAAGGAACAAAGAGTGCCACAAAGTTGTGGACTTTAAAA
1 AAGGTGCCACGAAGTTGTGGACTTTGAAAAGAA-AAAG-GTGCCACGAAGTCGTGGA-TTTTAAA
440385 GGGAAA
63 GGGAAA
* * *
440391 AAGAGTGCCAC-AGAGTTGTGGGCTTTGAAAAG---AAGGTGCCACGGAGTCGTGGACTTTAA
1 AAG-GTGCCACGA-AGTTGTGGACTTTGAAAAGAAAAAGGTGCCACGAAGTCGTGGATTTTAA
440450 GAAGGTATTT
Statistics
Matches: 103, Mismatches: 19, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
66 10 0.10
67 40 0.39
68 18 0.17
69 6 0.06
70 7 0.07
71 18 0.17
72 4 0.04
ACGTcount: A:0.34, C:0.15, G:0.31, T:0.20
Consensus pattern (68 bp):
AAGGTGCCACGAAGTTGTGGACTTTGAAAAGAAAAAGGTGCCACGAAGTCGTGGATTTTAAAGGG
AAA
Found at i:440427 original size:102 final size:96
Alignment explanation
Indices: 440153--440452 Score: 270
Period size: 102 Copynumber: 3.0 Consensus size: 96
440143 GAAAAGGGTG
*
440153 AAAGA-TGCCACAAAGTTGTGGAC-TTAAAAGGAATAAGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAAGAGTGCCACAAAGTTGTGGACTTTAAAAGGAAAAAGGTGCCAC-GAGTTGTGGGCTTTAAAA
* *
440216 GGGAAAAAGAGTGCCACAGAGTTGTGGGCTTT--GAAC
65 --G---AAG-GTGCCACGGAGTTGTGGACTTTAAGAAC
* ** * * **
440252 AGAAG-GTGCCACGAAGTCATGGACTTTGAAAA-GAAAAAGGCGCCACGAAGTCGTGGATTTTAA
1 A-AAGAGTGCCACAAAGTTGTGGACTTT-AAAAGGAAAAAGGTGCCACG-AGTTGTGGGCTTT-A
* *
440315 AGGAACAAGGTGCCACGGGGTTGTGGACTTTAAAGGAAC
62 A--AAGAAGGTGCCACGGAGTTGTGGACTTT-AA-GAAC
440354 AAAGAGTGCCACAAAGTTGTGGACTTTAAAAGGGAAAAAGAGTGCCACAGAGTTGTGGGCTTTGA
1 AAAGAGTGCCACAAAGTTGTGGACTTTAAAA-GGAAAAAG-GTGCCAC-GAGTTGTGGGCTTT-A
*
440419 AAAGAAGGTGCCACGGAGTCGTGGACTTTAAGAA
62 AAAGAAGGTGCCACGGAGTTGTGGACTTTAAGAA
440453 GGTATTTGAA
Statistics
Matches: 161, Mismatches: 23, Indels: 33
0.74 0.11 0.15
Matches are distributed among these distances:
98 19 0.12
99 4 0.02
100 22 0.14
101 33 0.20
102 55 0.34
103 7 0.04
104 20 0.12
105 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.31, T:0.20
Consensus pattern (96 bp):
AAAGAGTGCCACAAAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGAGTTGTGGGCTTTAAAAG
AAGGTGCCACGGAGTTGTGGACTTTAAGAAC
Found at i:448856 original size:52 final size:52
Alignment explanation
Indices: 448709--448836 Score: 220
Period size: 52 Copynumber: 2.5 Consensus size: 52
448699 GAAATATGAC
* *
448709 AATTTGCCTCCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
* *
448761 AATTTGCCTGCATGTATCGATACATTTTATAGTATATCGATACATCTAGGCA
1 AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
448813 AATTTGCCTGCATGTATCGATACA
1 AATTTGCCTGCATGTATCGATACA
448837 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (52 bp):
AATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGCA
Found at i:448863 original size:13 final size:13
Alignment explanation
Indices: 448845--448869 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
448835 CAAAGATCAG
448845 TGTATCGATACAA
1 TGTATCGATACAA
448858 TGTATCGATACA
1 TGTATCGATACA
448870 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:448948 original size:32 final size:33
Alignment explanation
Indices: 448907--448975 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
448897 GGCAGTTGCT
448907 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
448939 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
448972 TACA
1 TACA
448976 AATCATTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:448949 original size:13 final size:13
Alignment explanation
Indices: 448931--448955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
448921 ACAAAACTTA
448931 TGTATCGATACAT
1 TGTATCGATACAT
448944 TGTATCGATACA
1 TGTATCGATACA
448956 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:456238 original size:974 final size:971
Alignment explanation
Indices: 454035--461591 Score: 10420
Period size: 974 Copynumber: 7.9 Consensus size: 971
454025 AGATCCTAAC
*
454035 AAATTGCAAAAATGAAAAGTCATGCGTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
* * *
454100 TTTTTCCAAGATTTTTGGATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGT
66 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGT
* * * *
454165 TGTGAATGATTATGGGCCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCCAAGTTTATT
131 TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
* * * *
454230 CCACGAAATTTCTTATTTAGCCAAAACATGATCGACCATTTTGGCCTATTTTTCTTGCTGATTTG
196 CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
* * * ** *
454295 AAATTAATTTAGATGCATGATGAGGTGTCTATAAGAGAATATTCTTGTAAAAGTAGGTGAAATTT
261 AAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTT
* * * *
454360 CATTGCATGTATTCATATCATGGTGCTGAATTGTTGAGTTGCAAA-CTATTTTGATACCTTGGTC
326 CATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATC-ATTTAGATAGCTTGGTT
* * * * * * * * *
454424 GAATCTGTTTGAAATTAATAAAAAAGATATTGTGCTTATTTATGACTAGACTTCCTGATTTATAA
390 GAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAA
* *
454489 GTTATTTAATGAGATTTGAAATTAAAGGGA-TAAATTGCAAAAACGAAAAGTCATGCTTTATGGC
455 GTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGC
* * * *
454553 CAAAAGTATTAGACCAAGCCTTGTAAACGA-TTTGTTTCCATGATTTATGGATGGTTCCAAGCTG
520 CAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTG
* * * *
454617 ATTTGGTGATATGATTATGTGTTTTTATGATGTTTTGATTCATTTGGGGTCAAAATGCAAATATG
585 ATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATG
* * *
454682 CAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGAC
650 CAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGAT
* * * * *
454747 CAACCATTTTGGCATGTTTTTTTTTTGCTAATTTGAAATTAATTTAGATGTGTGATGAGGTGATT
715 CAACTA-TTTGGCATG--TTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTT
* *
454812 GCA-AGAGACAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATTCTGA
777 GCATA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGA
* * * *
454876 ATTGCTGAGCTCCAAATCATTTAGATTGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATAT
841 ATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATAT
* * *
454941 TGTGCATATTTTTGCCTTGATTTTGTTGATTTATAGGTTATTTAAAGAGATCTGAAATTATAGGG
906 TGTGCATATTTTT-CCTTGA-TTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGG
455006 ATT
969 ATT
* * *
455009 AAATTGCAAAAAGGAAAAGTCATGCCTCATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
455074 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTAGG-GATTTGATTATGTGTGTTTATGATG
66 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTT-GGTGATTTGATTATGTGTGTTTATGATG
* *
455138 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTACAAAGTTTGT
130 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
455203 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCCA-GTTTTTCTTGCTGATT
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGG-CATGTTTTTCTTGCTGATT
* * * *
455267 TGAAATTAATTTAGATGTGTGATAAGGTGTTTGAAAGAGAAAATTCTTGTCAAAGTAGGTGTAAT
259 TGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAAT
* * *
455332 TTCATTGCATGTATTTGTATCATGGTTCTGAATTGTTGAGTTGCAAATCATTTAAATAGCTTGGT
324 TTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGT
* *
455397 TGAATCTATTTGAAATTGATAAAGATGATCTTGTGCTTATTTTTGCCTTGATTTCTTAATTTATA
389 TGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATA
* ** *
455462 AGATATTTAACAAGATTTGAAATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTATGG
454 AGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGG
*
455527 CCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGAGTTGTGGATGGTTCCAAGCT
519 CCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCT
* *
455592 AATTTGGTGATTTGATTATGTGTTTTTATGTTGTTGTGATTGATTAGGGGTCAAAATGCAAATAT
584 GATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATAT
* * * * *
455657 GCGAAAATTTGAGGACTTTGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAACTTAAACATGA
649 GCAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGA
* ** * * * *
455722 TCAACTATTGCGGCATGTTTTTCTTATTGATTTTAAATTAATTTAGATGCATGTTGAGCTGTTTG
714 TCAACTATT-TGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTG
* * * *
455787 CATAAGAAAATTCTTGCAAAAG-AGGGTGAAATTTTATTGCATGTATTTGTACCGTGATGCTTAA
778 CATAAGAAAATTCTTGTAAAAGTA-GGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAA
* * * * *
455851 TTATTGGGTTGCAAATTATTTAGATAGCTTGGTCGAATCTATTTGAAATTGATAAAGATGAT-TT
842 TTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATT
* * * * *
455915 TTGCCT-TAATTT-CTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAAGGAT
907 GTGCATAT-TTTTCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGAT
455978 T
971 T
* * * *
455979 AAATTGCAAAAATGAAAGGTCATGCGTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGA-T
* * * *
456044 TTTTTTCCAAGATTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATGTGTTTTTATGATG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATG
*
456109 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
130 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* * * *
456174 TCCGTGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGACGTGTTTTTTTTTTTGCTGA
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATG---TTTTTCTTGCTGA
* * *
456239 TTTGAAATTAATTTAGATGCGTGATGAGGTTTTTGTTAA-AGAAAATTCTTGTAAAAGTAGGTGA
257 TTTGAAATTAATTTAGATGCGTGATAAGGTGTTTG-CAAGAGAAAATTCTTGTAAAAGTAGGTGA
* * * * * * * * *
456303 AATTTCATTACCTATATTTGTACCATGATTCCGAATTGTTGAGTTGCAAATCATTTAGGTAGCTT
321 AATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTT
* * *
456368 GGTCGAATCTATTTGAAATTGATATAGATGATATTGTGCATATTTTTGCCTTGAGTTT-TTGATT
386 GGTTGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA-TTTCTTGATT
* * * *
456432 TATAGGTTATTTAAAGAGATTTGAAATTACAGGGATTAAATTACAAAAATGAAAAGTCATGCTTT
450 TATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTT
* * *
456497 ATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTTCCGTGATTTGTGGATGGTTCCA
515 ATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCA
* * * * * **
456562 AGCTGATTTGGTGATTTGA-T-TGTGTTTTAATGATGTTGCGATCGATTAGGGGTCCAACTATAA
580 AGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAA
* * * * * *
456625 ATACGCAAAAATTTAAGGACTGGGTTGCAAAGTTTGTTGCTTGAAATTTCATATTTAGCTGAAAC
645 ATATGCAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAAC
* * * *
456690 ATGATCAACCAATTCGGCAAGTTTTTCTTGCTGATTTGAAATTAAGTTAGATGCGTGATGAGGTG
710 ATGATCAA-CTATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTG
* * * * * *
456755 TTTACATAAGAAAATTCTTGCAAAAGTTGGTGAAATGTCATTGCATGTATCTGTACCATGATGTT
774 TTTGCATAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* *
456820 GAATTGTTGAGTTGCAAATCTTTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATA-ATGATAA
839 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATA-GATGA
* * *
456884 TATTGTGCTTATTTTTGCCTTGATTTCTTCATTTATAAGTTATTTAATGAGATTTGAAATTATAG
903 TATTGTGCATATTTTT-CCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAG
456949 GGATT
967 GGATT
* * ** * ** * * **
456954 AAATTACGAAAATGAAAAGTGTTGC-TTACGGCCAAAACCATTTAACCGAA-CCTTGTAAATAAT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATC-AAGCCTTGTAAAGGAT
* * *
457017 TTTTTTCCACGATTTGTTGATGGTTCCAAA-TAGATTTGGTGATTAGATTATGTGTGTTTATGAT
65 TTTTTTCCATGATTTGTGGATGGTTCCAAACT-GATTTGGTGATTTGATTATGTGTGTTTATGAT
* ** *
457081 GTTGTGATTAATTATGGGTCAAAATGCAAATACACAAAAATTTAAGGA-TTTGTTGCAAAGTTTG
129 GTTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTG
** * *
457145 TTCCATGAAATTTCTTATTTAGCTGAATCATGATCAACCATTTTGGCATGTTTTTCTTGTTGATT
194 TTCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATT
* *
457210 TGAAATTAATTTAGAT-CTGTGATGAGGTGTCTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAA
259 TGAAATTAATTTAGATGC-GTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAA
*
457274 TTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTT-A
323 TTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGG
* *
457338 TTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATATAT
388 TTGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTAT
* *
457403 AAGTTATTTAATGAGATTTGAAATTATAAGGATTAAATTGCAAAAAAGAAAAGTCATGCTTTATG
453 AAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATG
* * * *
457468 GCCAAAAGTATTTGCCCGAGCCTTGTAAAGGATTTTTTTTCCATGATTTATGGATGGTTCCAAGC
518 GCCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGC
* * *
457533 TGATTTGGTGATTTGATTTTGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGTAAGTA
583 TGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATA
* *
457598 TGCAAAAATTTAAAGACTT-GAT-C-AA-------CC-----A-----T-TTT-G--G---CCTG
648 TGCAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATG
*
457636 -T----T-TTT--C------TT-AT-C-GATTTGTAAA-TAATTTAGATGCGTGATGAGGTGTTT
713 ATCAACTATTTGGCATGTTTTTCTTGCTGATTTG-AAATTAATTTAGATGCGTGATGAGGTGTTT
* * * * *
457683 GCATGAGAAAATTCTTGTAAAAGTAGGTAAAATTTCATTGTATGTATTTTTACCATGATGCAGAA
777 GCATAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAA
* * *
457748 TTATTGAGTTGCAAATCATTTAGATAGCTTGGTTGAATCTATTTGAAATTGATATAGATGATATT
842 TTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATT
* *
457813 GTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTGTAGGGAT
907 GTGCATATTTTT-CCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGAT
457878 T
971 T
*
457879 AAATTGCAAAAATGAAATGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAA--ATA
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGAT-
* * *
457942 TTTTTTCCACGATTTTTGGATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATG
* * *
458007 TTGTGATTGATTTTGGGTCAAAATGAAAATATGCAAAAATTTAAAGACTT-GTTGCAAAGTTTGT
130 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* * *
458071 TCCATGAAAATTT-TAATTTAGCCAAAACATGTTCAACCATTTGGGCATGTTTTTCTTGCTGATT
195 TCCATG-AAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATT
* * * * * *
458135 TGAATTTAATTTAGATGCATGA-AGAGATGTTTGCAAGAGAATATTCTTGCAAAAGTAAGTGAAA
259 TGAAATTAATTTAGATGCGTGATA-AGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAA
* * * * * * * * **
458199 TTTCATTGCACGCATTTGTATCATGGTGCTGAATTATTAAGTTGCAAACCATTTAAATACCTCAG
323 TTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGG
** * * *
458264 CCGAATCTATTTGAAATTAATAAAGATGATATTGTGCTGAATTTTGCCTTGATTTCTTGATTTAT
388 TTGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTAT
*
458329 AAGTTATTCAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATG
453 AAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATG
*
458394 GCCAAAAGTATTTGACCGAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGC
518 GCCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGC
* * *
458458 TAATTTGGTGAATTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTTAAAATGCAAATA
583 TGATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATA
* *
458523 TGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATG
648 TGCAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATG
* * * * *
458588 ATCAACCATTTTGGCGTGTTTTTTTTGCTGATTTGAAATTAATTTAGATACGTGATGAGGTTTTT
713 ATCAACTA-TTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTT
* * *
458653 GC-TAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACCTGTATTTGTACCATGATTCTGA
777 GCAT-AAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGA
* * *
458717 ATTATTGAGTTGCAAATCATTTAGATTGCTTGGTCGAATCTGTTTGAAATTGATATAGATGTTAT
841 ATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATAT
*
458782 TGTGCATATTTTTGCCTTGATTTCTTGATTTATAGGTTATTTAAAGAGATTTGAAATTATAGGGA
906 TGTGCATATTTTT-CCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGA
458847 TT
970 TT
458849 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
* *
458914 TTTTTCCGTGATTTGTGGATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGT
66 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGT
* *
458979 TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGATTGCAAAGTTTGTT
131 TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
* * * **
459044 CCATGAAATTTCTTATTTAACCGAAACATGATCAACCATTTTGGCCTGTTTTTCTTATTGATTTG
196 CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
* * * * *
459109 AAATTAAATTAGATGCTTGATAAGCTGTTTGTAAGATAAAATTCTTGTAAAAGTAGGTGAAATTT
261 AAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTT
* *
459174 CATTGCATGTATTCATATCATGGTGCTGAATTGTTGAGTTTCAAATCATTTAGATAGCTTGGTTG
326 CATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTTG
* *
459239 AATCTATTTGATATTGATAAAGATGATATTGCGCTTATTTTT-CCTTGATTTCTTGATTTATAAG
391 AATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAG
* *
459303 TTATTTAAT--GA---G--ATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTGTGGCC
456 TTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCC
** *
459361 -AAAGTATTAAACCAGGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGA
521 AAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGA
*
459425 TTTGGTGATTTGATTAAGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGC
586 TTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGC
* *
459490 AAAAATTTAAGGACTTGGATGCAAAGTTTGTTCTACGAAATTTCTTATTTAGCTG-AACATGATC
651 AAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATC
* * * * *
459554 AACTATTGTGGCATGTTTTTCATGCTGATTTGAAATTAATTTAGATGCATGTTGAGCTGTTTGCT
716 AACTATT-TGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCA
* * * *
459619 TGCA-AAAATTCTTGTAAAAGCAGGTGAAATTTTATTGCATGTATTTGTACCATGATGCTAAATT
780 T-AAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATT
* *
459683 GTTGGGTTGCAAAAT-TTTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATA-A-A-G--A---
844 GTTGAGTTGC-AAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATTG
* * * *
459739 TG-AT-TTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATA-AGGTTAGAAATTACAGGGATT
908 TGCATATTTTTCCTTGATTTCTTGATTTATAAGTTATTTAA-AGAGATTTGAAATTATAGGGATT
* * *
459801 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTAGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
* * * * *
459866 TTTTTCCATGATTTATGGATGGTTCCAAGCTAATTTGGTGAATTGATTATGTGT-TTTAATGGTG
66 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTT-ATGATG
* * * * * *
459930 TTGTGATTGATTAGGGGTCAAAAAGTAAATACGCAGAAATTTAAGGACTTTGTTGCAAAGTTTG-
130 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* ** * * *
459994 TCCGATGAAATTTCATATTTAGCTGAAACATGATCATCCAATTTGGAATGTTTTTCTTGCTGATT
195 TCC-ATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATT
* * *
460059 TGAAATTAATTTAGATGCGTGACAAGCTGTTTGCAAGAGAAAATTCTCGTAAAAGTAGGTGAAAT
259 TGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAAT
* *
460124 TTCATTGCATGTATTCGTATCATGGTGCTAAATTGTTAAGTTGCAAATCATTTAGATAGCTTGGT
324 TTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGT
* *
460189 GGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATA
389 TGAATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATA
* * *
460254 AGTTATTTAGTGAGATTTGAAATTATAGGGACTAAATTGCAAAATTGAAAAGTCATGCTTTATGG
454 AGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGG
* * * *
460319 CCAAAAGTATTTGACCGAGCCTTGTAATGGATTTTTTTTCCATGATTTATGGATGGTTCCAAGCT
519 CCAAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCT
* * * * *
460384 AATTTGGTGAATTGATTATGTGTTTTAATGGTGTTGTGATTGATTAGGGGTCAAAATGCAAATAC
584 GATTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATAT
* * * *
460449 GCAGAAATTTAAGGACTTTGTTGCAAAGTTTGTTCCATGAAATTTCATATTTAGCTGAAACATGA
649 GCAAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGA
* * *
460514 TCATCCAATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTTTTTG
714 TCA-ACTATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTG
* * *
460579 C-TAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACCTGTATTTGTACCATGATTCTGAA
778 CAT-AAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAA
*
460643 TTGTTGAGTTGCAAATCATTTAGATTGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATT
842 TTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATT
460708 GTGCATATTTTTGCCTTGATTTCTTGATTTAT-AGATTATTTAAAGAGATTTGAAATTATAGGGA
907 GTGCATATTTTT-CCTTGATTTCTTGATTTATAAG-TTATTTAAAGAGATTTGAAATTATAGGGA
460772 TT
970 TT
460774 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
* * *
460839 TTTTTCCGTGATTTGTGGATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGC
66 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGT
* *
460904 TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGATTGCAAAGTTTGTT
131 TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
* * * **
460969 CCATGAAATTTCTTATTTAACCGAAACATGATCAACCATTTTGGCCTGTTTTTCTTATTGATTTG
196 CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
* * * * *
461034 AAATTAAATTAGATGCTTGATAAGCTGTTTGTAAGATAAAATTCTTGTAAAAGTAGGTGAAATTT
261 AAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTT
*
461099 CATTGCATGTATTCATATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTTG
326 CATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTTG
* * *
461164 AATCTGTTTGATATTGATAAAGATGATATTGCGCTTATTTTT-CCTTGATTTCTTGATTTATAAG
391 AATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAG
* *
461228 TTATTTAAT--GA---G--ATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTGTGGCC
456 TTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCC
** *
461286 AAAAGTATTAAACCAGGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGA
521 AAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGA
*
461351 TTTGGTGATTTGATTAAGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGC
586 TTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGC
* *
461416 AAAAATTTAAGGACTTGGATGCAAAGTTTGTTCTACGAAATTTCTTATTTAGCTG-AACATGATC
651 AAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATC
* * * * *
461480 AACTATTGTGGCATGTTTTTCATGCTGATTTGAAATTAATTTAGATGCATGTTGAGCTGTTTGCT
716 AACTATT-TGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCA
* *
461545 TACA-AAAATTCTTGTAAAAGCAGGTGAAATTTTATTGCATGTATTTG
780 TA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTG
461592 AAATTATGGA
Statistics
Matches: 5824, Mismatches: 627, Indels: 274
0.87 0.09 0.04
Matches are distributed among these distances:
924 2 0.00
925 609 0.10
926 194 0.03
927 2 0.00
928 4 0.00
934 1 0.00
935 2 0.00
936 2 0.00
940 1 0.00
942 1 0.00
943 3 0.00
945 1 0.00
946 4 0.00
947 1 0.00
948 1 0.00
949 4 0.00
950 1 0.00
951 6 0.00
952 433 0.07
953 36 0.01
954 2 0.00
955 5 0.00
958 2 0.00
959 3 0.00
960 44 0.01
961 173 0.03
962 162 0.03
963 191 0.03
964 299 0.05
965 211 0.04
966 1 0.00
967 9 0.00
968 196 0.03
969 133 0.02
970 429 0.07
971 315 0.05
972 559 0.10
973 555 0.10
974 926 0.16
975 143 0.02
976 158 0.03
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (971 bp):
AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGT
TGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
AAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTT
CATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTTG
AATCTATTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAG
TTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCC
AAAAGTATTTGACCAAGCCTTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGA
TTTGGTGATTTGATTATGTGTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGC
AAAAATTTAAGGACTTGGATGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAACATGATC
AACTATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAT
AAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTGAATTGT
TGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATATTGTGC
ATATTTTTCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGGGATT
Found at i:456920 original size:485 final size:486
Alignment explanation
Indices: 454035--457617 Score: 4846
Period size: 487 Copynumber: 7.4 Consensus size: 486
454025 AGATCCTAAC
* *
454035 AAATTGCAAAAATGAAAAGTCATGCGTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGATT
* * * * *
454100 TTTTTCCAAGATTTTTGGATGGTTCCAAACTGATTTGGTGATTAGATTATGTGTGTTTATGATGT
66 TTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGT
* * * * *
454165 TGTGAATGATTATGGGCCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCCAAGTTTATT
131 TGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
* * * *
454230 CCACGAAATTTCTTATTTAGCCAAAACATGATCGACCATTTTGGCCTATTTTTCTTGCTGATTTG
196 CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
* *
454295 AAATTAATTTAGATGCATGATGAGGTGTCT--ATAAGAGAATATTCTTGTAAAAGTAGGTGAAAT
261 AAATTAATTTAGATGCGTGATGAGGTGTTTGCATAAGA-AA-ATTCTTGTAAAAGTAGGTGAAAT
** * * * * *
454358 TTCATTGCATGTATTCATATCATGGTGCTGAATTGTTGAGTTGCAAA-CTATTTTGATACCTTGG
324 TTCATTGCATGTATTTGTACCATGATGTTGAATTGTTGAGTTGCAAATC-ATTTAGATAGCTTGG
* * * * * * * *
454422 TCGAATCTGTTTGAAATTAATAAAAAAGATATTGTGCTTATTTATGACTAGACTTCCTGATTTAT
388 TCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTAT
*
454487 AAGTTATTTAATGAGATTTGAAATTAAAGGGA-T
453 AAGTTATTTAATGAGATTTGAAATTATAGGGATT
* * *
454520 AAATTGCAAAAACGAAAAGTCATGCTTTATGGCCAAAAGTATTAGACCAAGCCTTGTAAACGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGATT
* * *
454585 TGTTTCCATGATTTATGGATGGTTCCAAGCTGATTTGGTGATATGATTATGTGTTTTTATGATGT
66 TTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGT
* * *
454650 TTTGATTCATTTGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
131 TGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
* * * *
454715 CCATGAAATTTCTTATTTAGCCGAAACATGACCAACCATTTTGGCATGTTTTTTTTTTGCTAATT
196 CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATG--TTTTTCTTGCTGATT
* * *
454780 TGAAATTAATTTAGATGTGTGATGAGGTGATTGCA-AGAGACAATTCTTGTAAAAGTAGGTGAAA
259 TGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATA-AGAAAATTCTTGTAAAAGTAGGTGAAA
* * * *
454844 TTTCATTGCATGTATTTGTACCATGAT-TCTGAATTGCTGAGCTCCAAATCATTTAGATTGCTTG
323 TTTCATTGCATGTATTTGTACCATGATGT-TGAATTGTTGAGTTGCAAATCATTTAGATAGCTTG
* * *
454908 GTCGAATCTGTTTGAAATTGATATAGATGATATTGTGCATATTTTTGCCTTGATTTTGTTGATTT
387 GTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA-TTTCTTGATTT
* * *
454973 ATAGGTTATTTAAAGAGATCTGAAATTATAGGGATT
451 ATAAGTTATTTAATGAGATTTGAAATTATAGGGATT
* * * *
455009 AAATTGCAAAAAGGAAAAGTCATGCCTCATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGATT
* *
455074 TTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTAGG-GATTTGATTATGTGTGTTTATGATG
66 TTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTT-GGTGATTTGATTATGTGTTTTTATGATG
* * *
455138 TTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTACAAAGTTTGT
130 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
455203 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCCA-GTTTTTCTTGCTGATT
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGG-CATGTTTTTCTTGCTGATT
* * * * *
455267 TGAAATTAATTTAGATGTGTGATAAGGTGTTTG-AAAGAGAAAATTCTTGTCAAAGTAGGTGTAA
259 TGAAATTAATTTAGATGCGTGATGAGGTGTTTGCATA-AGAAAATTCTTGTAAAAGTAGGTGAAA
* * *
455331 TTTCATTGCATGTATTTGTATCATGGT-TCTGAATTGTTGAGTTGCAAATCATTTAAATAGCTTG
323 TTTCATTGCATGTATTTGTACCATGATGT-TGAATTGTTGAGTTGCAAATCATTTAGATAGCTTG
* * * *
455395 GTTGAATCTATTTGAAATTGATAAAGATGATCTTGTGCTTATTTTTGCCTTGATTTCTTAATTTA
387 GTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTA
* **
455460 TAAGATATTTAACAAGATTTGAAATTATAGGGATT
452 TAAGTTATTTAATGAGATTTGAAATTATAGGGATT
*
455495 AAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGACT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGA-T
* * *
455560 TTTTTTCCATGAGTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATGTGTTTTTATGTTG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATG
* * * *
455625 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCGAAAATTTGAGGACTTTGATGCAAAGTTTGT
130 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* ** * ** **
455690 TCCATGAAATTTCTTATTTAACTTAAACATGATCAACTATTGCGGCATGTTTTTCTTATTGATTT
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTT
* * * * *
455755 TAAATTAATTTAGATGCATGTTGAGCTGTTTGCATAAGAAAATTCTTGCAAAAG-AGGGTGAAAT
260 GAAATTAATTTAGATGCGTGATGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTA-GGTGAAAT
* * * * *
455819 TTTATTGCATGTATTTGTACCGTGATGCTT-AATTATTGGGTTGCAAATTATTTAGATAGCTTGG
324 TTCATTGCATGTATTTGTACCATGATG-TTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGG
* * *
455883 TCGAATCTATTTGAAATTGATAAAGATGAT-TTTTGCCTTA-ATTT--CTTGATTTCTTGATTTA
388 TCGAATCTGTTTGAAATTGATAAAGATGATATTGTG-CTTATTTTTGCCTTGATTTCTTGATTTA
*
455944 TAAGTTATTTAATGAGATTTGAAATTATAAGGATT
452 TAAGTTATTTAATGAGATTTGAAATTATAGGGATT
* * *
455979 AAATTGCAAAAATGAAAGGTCATGCGTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGA-T
* *
456044 TTTTTTCCAAGATTTGTGGATGGTTCCAAGCTAATTTGGTGATTTGATTATGTGTTTTTATGATG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATG
456109 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
130 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* * * *
456174 TCCGTGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGACGTGTTTTTTTTTTTGCTGA
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATG---TTTTTCTTGCTGA
* *
456239 TTTGAAATTAATTTAGATGCGTGATGAGGTTTTTG-TTAAAGAAAATTCTTGTAAAAGTAGGTGA
257 TTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAT-AAGAAAATTCTTGTAAAAGTAGGTGA
* * * * *
456303 AATTTCATTACCTATATTTGTACCATGAT-TCCGAATTGTTGAGTTGCAAATCATTTAGGTAGCT
321 AATTTCATTGCATGTATTTGTACCATGATGT-TGAATTGTTGAGTTGCAAATCATTTAGATAGCT
* * *
456367 TGGTCGAATCTATTTGAAATTGATATAGATGATATTGTGCATATTTTTGCCTTGAGTTT-TTGAT
385 TGGTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGA-TTTCTTGAT
* * *
456431 TTATAGGTTATTTAAAGAGATTTGAAATTACAGGGATT
449 TTATAAGTTATTTAATGAGATTTGAAATTATAGGGATT
* *
456469 AAATTACAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGA-T
* *
456534 TTTTTTCCGTGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGA-T-TGTGTTTTAATGATG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATG
* * * * ** * *
456597 TTGCGATCGATTAGGGGTCCAACTATAAATACGCAAAAATTTAAGGACTGGGTTGCAAAGTTTGT
130 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGT
* * * ** * * *
456662 TGCTTGAAATTTCATATTTAGCTGAAACATGATCAACCAATTCGGCAAGTTTTTCTTGCTGATTT
195 TCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTT
* * * * *
456727 GAAATTAAGTTAGATGCGTGATGAGGTGTTTACATAAGAAAATTCTTGCAAAAGTTGGTGAAATG
260 GAAATTAATTTAGATGCGTGATGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAGGTGAAATT
* *
456792 TCATTGCATGTATCTGTACCATGATGTTGAATTGTTGAGTTGCAAATCTTTTAGATAGCTTGGTC
325 TCATTGCATGTATTTGTACCATGATGTTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTC
* * *
456857 GAATCTGTTTGAAATTGATAATGATAATATTGTGCTTATTTTTGCCTTGATTTCTTCATTTATAA
390 GAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAA
456922 GTTATTTAATGAGATTTGAAATTATAGGGATT
455 GTTATTTAATGAGATTTGAAATTATAGGGATT
* * ** * ** * **
456954 AAATTACGAAAATGAAAAGTGTTGC-TTACGGCCAAAACCATTTAACCGAA-CCTTGTAAATAAT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACC-AAGCCTTGTAAAGGAT
* * * * *
457017 TTTTTTCCACGATTTGTTGATGGTTCCAA-ATAGATTTGGTGATTAGATTATGTGTGTTTATGAT
65 TTTTTTCCATGATTTGTGGATGGTTCCAAGCT-GATTTGGTGATTTGATTATGTGTTTTTATGAT
* * ** *
457081 GTTGTGATTAATTATGGGTCAAAATGCAAATACACAAAAATTTAAGGA-TTTGTTGCAAAGTTTG
129 GTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTG
** * *
457145 TTCCATGAAATTTCTTATTTAGCTGAATCATGATCAACCATTTTGGCATGTTTTTCTTGTTGATT
194 TTCCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATT
*
457210 TGAAATTAATTTAGAT-CTGTGATGAGGTGTCTGCA-AGAGAAAATTCTTGTAAAAGTAGGTGAA
259 TGAAATTAATTTAGATGC-GTGATGAGGTGTTTGCATA-AGAAAATTCTTGTAAAAGTAGGTGAA
* * * *
457273 ATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTT-
322 ATTTCATTGCATGTATTTGTACCATGATGTTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTG
* * *
457337 ATTGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATATA
387 GTCGAATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTA
*
457402 TAAGTTATTTAATGAGATTTGAAATTATAAGGATT
452 TAAGTTATTTAATGAGATTTGAAATTATAGGGATT
* * *
457437 AAATTGCAAAAAAGAAAAGTCATGCTTTATGGCCAAAAGTATTTGCCCGAGCCTTGTAAAGGATT
1 AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGA-T
* *
457502 TTTTTTCCATGATTTATGGATGGTTCCAAGCTGATTTGGTGATTTGATTTTGTGTTTTTATGATG
65 TTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATG
* * *
457567 TTGTGATTGATTAGGGGTCAAAATGTAAGTATGCAAAAATTTAAAGACTTG
130 TTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTG
457618 ATCAACCATT
Statistics
Matches: 2714, Mismatches: 338, Indels: 91
0.86 0.11 0.03
Matches are distributed among these distances:
482 1 0.00
483 157 0.06
484 510 0.19
485 601 0.22
486 117 0.04
487 786 0.29
488 162 0.06
489 225 0.08
490 152 0.06
491 3 0.00
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (486 bp):
AAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGATT
TTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTTATGATGT
TGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTT
CCATGAAATTTCTTATTTAGCCAAAACATGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTG
AAATTAATTTAGATGCGTGATGAGGTGTTTGCATAAGAAAATTCTTGTAAAAGTAGGTGAAATTT
CATTGCATGTATTTGTACCATGATGTTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCG
AATCTGTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAG
TTATTTAATGAGATTTGAAATTATAGGGATT
Found at i:458765 original size:486 final size:485
Alignment explanation
Indices: 457616--461591 Score: 5479
Period size: 486 Copynumber: 8.2 Consensus size: 485
457606 TTTAAAGACT
* * *
457616 TGATCAACCATTTTGGCCTGTTTTTCTT-ATCGATTTGTAAA-TAATTTAGATGCGTGATGAGGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCT-GATTTG-AAATTAATTTAGATGCGTGATGAGCT
* * * *
457679 GTTTGC-ATGAGAAAATTCTTGTAAAAGTAGGTAAAATTTCATTGTATGTATTTTTACCATGATG
64 GTTTGCTA-AAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATG
* * * * *
457743 CAGAATTATTGAGTTGCAAATCATTTAGATAGCTTGGTTGAATCTATTTGAAATTGATATAGATG
128 CTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATG
* *
457808 ATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTGTA
193 ATATTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATA
* *
457873 GGGATTAAATTGCAAAAATGAAATGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAA
257 GGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAA
* * * *
457938 A--ATATTTTTTCCACGATTTTTGGATGGTTCCAAACTGATTTGGTG-ATTAGATTATGTGTGTT
322 AGGAT-TTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATT-GATTATGTGTTTT
** * *
458000 TATGATGTTGTGATTGATTTTGGGTCAAAATGAAAATATGCAAAAATTTAAAGACTT-GTTGCAA
385 TATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAA
* *
458064 AGTTTGTTCCATGAAAATTT-TAATTTAGCCAAAACA
450 AGTTTGTTCCATG-AAATTTCTTATTTAGCCGAAACA
* * * * * *
458100 TGTTCAACCATTTGGGCATGTTTTTCTTGCTGATTTGAATTTAATTTAGATGCATGAAGAGATGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* * * * * * *
458165 TTGC-AAGAGAATATTCTTGCAAAAGTAAGTGAAATTTCATTGCACGCATTTGTATCATGGTGCT
66 TTGCTAA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* * * * * ** * * *
458229 GAATTATTAAGTTGCAAACCATTTAAATACCTCAGCCGAATCTATTTGAAATTAATAAAGATGAT
130 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGAT
* *
458294 ATTGTGCTGAATTTTGCCTTGATTTCTTGATTTATAAGTTATTCAATGAGATTTGAAATTATAGG
195 ATTGTGCT-ATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGG
*
458359 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAAAG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
*
458424 GATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTAATTTGGTGAATTGATTATGTGTTTTTATG
324 GATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTATG
*
458489 ATGTTGTGATTGATTAGGGGTTAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTT
389 ATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTT
458554 TGTTCCATGAAATTTCTTATTTAGCCGAAACA
454 TGTTCCATGAAATTTCTTATTTAGCCGAAACA
* * * * *
458586 TGATCAACCATTTTGGCGTGTTTTTTTTGCTGATTTGAAATTAATTTAGATACGTGATGAGGTTT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* * *
458651 TTGCTAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACCTGTATTTGTACCATGATTCTG
66 TTGCTAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTG
* * * *
458716 AATTATTGAGTTGCAAATCATTTAGATTGCTTGGTCGAATCTGTTTGAAATTGATATAGATGTTA
131 AATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATA
* *
458781 TTGTGCATATTTTTGCCTTGATTTCTTGATTTATAGGTTATTTAAAGAGATTTGAAATTATAGGG
196 TTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGG
*
458846 ATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGG
260 ATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGG
* * * * *
458911 ATTTTTTTCCGTGATTTGTGGATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATGA
325 ATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTATGA
* * *
458976 TGTTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGATTGCAAAGTTT
390 TGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTT
*
459041 GTTCCATGAAATTTCTTATTTAACCGAAACA
455 GTTCCATGAAATTTCTTATTTAGCCGAAACA
* ** * * *
459072 TGATCAACCATTTTGGCCTGTTTTTCTTATTGATTTGAAATTAAATTAGATGCTTGATAAGCTGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* ** * *
459137 TTG-TAAGATAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCATATCATGGTGCT
66 TTGCTAA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* * * *
459201 GAATTGTTGAGTTTCAAATCATTTAGATAGCTTGGTTGAATCTATTTGATATTGATAAAGATGAT
130 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGAT
*
459266 ATTGCGCTTATTTTT-CCTTGATTTCTTGATTTATAAGTTATTTAAT--GA---G--ATTATAGG
195 ATTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGG
* * ** *
459323 GATTAAATTGTAAAAATGAAAAGTCATGCTTTGTGGCC-AAAGTATTAAACCAGGCCTTGTAAAG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
* *
459387 GACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGTGTTTTTAT
324 GA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTAT
*
459452 GATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGATGCAAAGT
388 GATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGT
* * *
459517 TTGTTCTACGAAATTTCTTATTTAGCTG-AACA
453 TTGTTCCATGAAATTTCTTATTTAGCCGAAACA
* * * * *
459549 TGATCAACTATTGTGGCATGTTTTTCATGCTGATTTGAAATTAATTTAGATGCATGTTGAGCTGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
** * *
459614 TTGCTTGCA-AAAATTCTTGTAAAAGCAGGTGAAATTTTATTGCATGTATTTGTACCATGATGCT
66 TTGC-TAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* * *
459678 AAATTGTTGGGTTGCAAAAT-TTTTAGATAGCTTGGTCGAATCTGTTTGAAATTGAT-AA-A-G-
130 GAATTGTTGAGTTGC-AAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
* * * *
459738 -A---TG--ATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATAAGGTTAGAAATTACAGG
194 TATTGTGCTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGG
* *
459797 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTAGTAAAG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
* * *
459862 GATTTTTTTCCATGATTTATGGATGGTTCCAAGCTAATTTGGTGAATTGATTATGTGTTTTAATG
324 GATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTATG
* * * * * *
459927 GTGTTGTGATTGATTAGGGGTCAAAAAGTAAATACGCAGAAATTTAAGGACTTTGTTGCAAAGTT
389 ATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTT
* *
459992 TG-TCCGATGAAATTTCATATTTAGCTGAAACA
454 TGTTCC-ATGAAATTTCTTATTTAGCCGAAACA
* * * **
460024 TGATCATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGACAAGCTGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* * * *
460089 TTGC-AAGAGAAAATTCTCGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCT
66 TTGCTAA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* * *
460153 AAATTGTTAAGTTGCAAATCATTTAGATAGCTTGGTGGAATCTGTTTGAAATTGATAAAGATGAT
130 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGAT
*
460218 ATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAGTGAGATTTGAAATTATAGG
195 ATTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGG
* * * *
460283 GACTAAATTGCAAAATTGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCGAGCCTTGTAATG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
* * *
460348 GATTTTTTTTCCATGATTTATGGATGGTTCCAAGCTAATTTGGTGAATTGATTATGTGTTTTAAT
324 GA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTAT
* * * *
460413 GGTGTTGTGATTGATTAGGGGTCAAAATGCAAATACGCAGAAATTTAAGGACTTTGTTGCAAAGT
388 GATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGT
* *
460478 TTGTTCCATGAAATTTCATATTTAGCTGAAACA
453 TTGTTCCATGAAATTTCTTATTTAGCCGAAACA
* * * *
460511 TGATCATCCAATTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGTTT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* * *
460576 TTGCTAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTACCTGTATTTGTACCATGATTCTG
66 TTGCTAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTG
* *
460641 AATTGTTGAGTTGCAAATCATTTAGATTGCTTGGTCGAATCTGTTTGAAATTGATATAGATGATA
131 AATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATA
*
460706 TTGTGCATATTTTTGCCTTGATTTCTTGATTTAT-AGATTATTTAAAGAGATTTGAAATTATAGG
196 TTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAG-TTATTTAATGAGATTTGAAATTATAGG
*
460770 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
* * * * *
460835 GATTTTTTTCCGTGATTTGTGGATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATG
324 GATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTATG
* * * *
460900 ATGCTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGATTGCAAAGTT
389 ATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTT
*
460965 TGTTCCATGAAATTTCTTATTTAACCGAAACA
454 TGTTCCATGAAATTTCTTATTTAGCCGAAACA
* ** * * *
460997 TGATCAACCATTTTGGCCTGTTTTTCTTATTGATTTGAAATTAAATTAGATGCTTGATAAGCTGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* ** * *
461062 TTG-TAAGATAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCATATCATGGTGCT
66 TTGCTAA-AGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCT
* *
461126 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTTGAATCTGTTTGATATTGATAAAGATGAT
130 GAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGAT
*
461191 ATTGCGCTTATTTTT-CCTTGATTTCTTGATTTATAAGTTATTTAAT--GA---G--ATTATAGG
195 ATTGTGC-TATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGG
* * ** *
461248 GATTAAATTGTAAAAATGAAAAGTCATGCTTTGTGGCCAAAAGTATTAAACCAGGCCTTGTAAAG
259 GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAG
* *
461313 GACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGTGTTTTTAT
324 GA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTAT
*
461378 GATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGATGCAAAGT
388 GATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGT
* * *
461443 TTGTTCTACGAAATTTCTTATTTAGCTG-AACA
453 TTGTTCCATGAAATTTCTTATTTAGCCGAAACA
* * * * *
461475 TGATCAACTATTGTGGCATGTTTTTCATGCTGATTTGAAATTAATTTAGATGCATGTTGAGCTGT
1 TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
* * *
461540 TTGCTTACA-AAAATTCTTGTAAAAGCAGGTGAAATTTTATTGCATGTATTTG
66 TTGC-TAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTG
461592 AAATTATGGA
Statistics
Matches: 3108, Mismatches: 334, Indels: 106
0.88 0.09 0.03
Matches are distributed among these distances:
466 6 0.00
467 31 0.01
469 2 0.00
472 2 0.00
473 2 0.00
474 186 0.06
475 183 0.06
476 4 0.00
477 180 0.06
478 362 0.12
479 143 0.05
480 5 0.00
483 9 0.00
484 278 0.09
485 170 0.05
486 1088 0.35
487 452 0.15
488 5 0.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (485 bp):
TGATCAACCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGCTGT
TTGCTAAAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTTGTACCATGATGCTG
AATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGATA
TTGTGCTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAGGGA
TTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAAGGA
TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGAATTGATTATGTGTTTTTATGAT
GTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTG
TTCCATGAAATTTCTTATTTAGCCGAAACA
Found at i:461929 original size:353 final size:354
Alignment explanation
Indices: 461240--461942 Score: 995
Period size: 353 Copynumber: 2.0 Consensus size: 354
461230 ATTTAATGAG
* * *
461240 ATTATAGGGATTAAATTGTAAAAATGAAAAGTCATGCTTTGTGGCCAAAAGTATTAAACCAGGCC
1 ATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTAAACCAAGCC
* * * *
461305 TTGTAAAGGACTTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTAAGT
66 TTGTAAAAGACTTTTTTTCCATGATCTGTGGATGGTTCCAAACTGATTTGGTGAATTGATTAAGT
* *
461370 GTTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGA
131 GTGTTTATGATGTTGTGATTGATTAGGGGCCAAAATGCAAATATGCAAAAATTTAAGGACTTGGA
* *
461435 TGCAAAGTTTGTTCTACGAAATTTCTTATTTAGCTGAACATGATCAACTATTGTGGCATGTTTTT
196 TGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCAGAACATGATCAACTATTGTGGCATGTTTTT
* * ** * * *
461500 CATGCTGATTTGAAATTAATTTAGATGCATGTTGAGCTGTTTGCTTACAAAAATTCTTGTAAAAG
261 CATGCAGACTTGAAATTAATTTAGATGCATAATAAGCTGTTTACTAACAAAAATTCTTGTAAAAG
*
461565 CAGGTGAAATTTTATTGCATGTATTTGAA
326 CAGGTGAAATTTCATTGCATGTATTTGAA
** ** *
461594 ATTAT-GGAGATTAAATTGCAACCATGAAAAGTCATGCTTTATGGCCAAAAGTATTGGATCAAGC
1 ATTATAGG-GATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTAAACCAAGC
*
461658 CTTGTAAAAGA-TTTTTTTCCATGATCTGTGGATGGTTCCAAACTGA-TTGGTGAATTGATTATG
65 CTTGTAAAAGACTTTTTTTCCATGATCTGTGGATGGTTCCAAACTGATTTGGTGAATTGATTAAG
* *
461721 TGTGTTTATGATGTTGTGATTGATTATGGGCCAAAATGCAAATATGCAAAAATTTAAGGATTTGG
130 TGTGTTTATGATGTTGTGATTGATTAGGGGCCAAAATGCAAATATGCAAAAATTTAAGGACTTGG
* * *
461786 TTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAA-AGTTGATCAA-TCATTTTGGCATGT
195 ATGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCAGAACA--TGATCAACT-ATTGTGGCATGT
* * **
461849 TTTTCTTGCAGACTTGAAATTAATTTAGATGCATAATAAGGTGTTTAC-AAGTGAAAATTCTTGT
257 TTTTCATGCAGACTTGAAATTAATTTAGATGCATAATAAGCTGTTTACTAA-CAAAAATTCTTGT
**
461913 AAAAGTTGGTGAAATTTCATTGCATGTATT
321 AAAAGCAGGTGAAATTTCATTGCATGTATT
461943 CGTATCATGG
Statistics
Matches: 308, Mismatches: 36, Indels: 11
0.87 0.10 0.03
Matches are distributed among these distances:
351 1 0.00
352 113 0.37
353 131 0.43
354 63 0.20
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (354 bp):
ATTATAGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTAAACCAAGCC
TTGTAAAAGACTTTTTTTCCATGATCTGTGGATGGTTCCAAACTGATTTGGTGAATTGATTAAGT
GTGTTTATGATGTTGTGATTGATTAGGGGCCAAAATGCAAATATGCAAAAATTTAAGGACTTGGA
TGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCAGAACATGATCAACTATTGTGGCATGTTTTT
CATGCAGACTTGAAATTAATTTAGATGCATAATAAGCTGTTTACTAACAAAAATTCTTGTAAAAG
CAGGTGAAATTTCATTGCATGTATTTGAA
Found at i:462980 original size:486 final size:482
Alignment explanation
Indices: 461587--463060 Score: 2033
Period size: 487 Copynumber: 3.0 Consensus size: 482
461577 TATTGCATGT
* * ** * *
461587 ATTTGAAATTATGGAGATTAAATTGCAACCATGAAAAGTCATGCTTTATGGCCAAAAGTATTGGA
1 ATTTGAAATTATGGGGACTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGA
** * * *
461652 -TCAAGCCTTGTAAAAGATTTTTTTCCATGATCTGTGGATGGTTCCAAACTGA-TTGGTGAATTG
66 CT-GTGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTG
* * *
461715 ATTATGTGTGTTTATGATGTTGTGATTGATTATGGGCCAAAATGCAAATATGCAAAAATTTAAGG
130 ATAATGTGT-TTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGG
* ** *
461780 ATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAAAGTTGATCAATCATTTTGGC
194 ACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAAACATGATCAACCATTTTGGC
* * * * *
461845 ATGTTTTTCTTGCAGACTTGAAATTAATTTAGATGCATAATAAGGTGTTTACAAGTGAAAATTCT
259 ATGTTTTT-TTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGC-AGTGAAAATTCT
* * * *
461910 TGTAAAAGTTGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTCAATTATTGAGTTGCAAA
322 TGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTAAGTTGCAAA
*
461975 TCATTTAGATAGCTTGATGGAATCTTTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCC
387 TCATTTAGATAGCTTGGTGGAAT-TTTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCC
*
462040 TTGATTTCTTGATTTACAAGTTAATTAATGAG
451 TTGATTTCTTGATTTATAAGTTAATTAATGAG
* *
462072 ATTTGAAATT-GGAGGGACTAAATTGTAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTG
1 ATTTGAAATTATG-GGGACTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTG
* * *
462136 ACTGTGCCTTGTAATGGATTTTTTTTCCATGATTTTTGGATGGTTCCAAGCTGATTTGGTGATTT
65 ACTGTGCCTTGTAAAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTT
462201 GATAATGTGTTTTGATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAG
129 GATAATGTGTTTT-ATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAG
* *
462266 GACTTGGTTGCAAAGTTTGTT-TATGAAATTTCTTATTTAGCTGAAACATGATCAACCATTTTGG
193 GACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAAACATGATCAACCATTTTGG
* * * *
462330 CAAGTTTTCTTTTTGCTGTTTTGAAGTTAATTTAGATGCGTGATAAAGTGTTTGCA-TAGAAAAT
258 C-A-TGTT-TTTTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAGT-GAAAAT
* * *
462394 TTTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCGGAATCGTTAAGTTGC
319 TCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTAAGTTGC
* * * * * *
462459 AAGTCATTTGGATAGCTTTGTGGAATCTATTTGAAATTGATAAAAATGATATTGCGCTTATTTTT
384 AAATCATTTAGATAGCTTGGTGGAAT-TTTTTGAAATTGATAAAGATGATATTGTGCTTATTTTT
* * *
462524 GCCTTGATTTCTTGATTTATAAGTTACTTATTGGG
448 GCCTTGATTTCTTGATTTATAAGTTAATTAATGAG
*
462559 ATTTGAAATTATGGGGACTAAATTGCAAAAATGAAAAGTCTTGCTTTATGGCCAAAACTATTTGA
1 ATTTGAAATTATGGGGACTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGA
*
462624 CTGTGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAATTGATTTGGTGATTTGA
66 CTGTGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGA
* * *
462689 TCATGTGTTTTAATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATACGTAAAAATTTAAGGA
131 TAATGTGTTTT-ATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGA
* * *
462754 CTTGGATGCAAAGTTTGTTCCACGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGGCA
195 CTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAAACATGATCAACCATTTTGGCA
* * *
462819 TGCTTTTTTTGCTGATTTGAAAATAATTTAGATGCGTGATGAGGTGCTTGCAGCTGAAAATTCTT
260 TG-TTTTTTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAG-TGAAAATTCTT
* * * * **
462884 GTAAAAGTAGGTGAAATTTCGTTGCATGTATTTGTACCATGATTTTGAATTGTTAAGTTGCAAAT
323 GTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTAAGTTGCAAAT
* * * * *
462949 CATTTAGATTGCTTGGTCGAATTTGTTTGAAATTGAT-ATGATGATATTGTGCATATTTTGGCCT
388 CATTTAGATAGCTTGGTGGAATTT-TTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCT
* * * * *
463013 TGATTTGTTGATGTATAGGTTATTTAAAGAG
452 TGATTTCTTGATTTATAAGTTAATTAATGAG
*
463044 ATTTGAAATTATAGGGA
1 ATTTGAAATTATGGGGA
463061 TTTATAGGTT
Statistics
Matches: 872, Mismatches: 102, Indels: 30
0.87 0.10 0.03
Matches are distributed among these distances:
484 1 0.00
485 171 0.20
486 298 0.34
487 360 0.41
488 39 0.04
489 3 0.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (482 bp):
ATTTGAAATTATGGGGACTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAACTATTTGA
CTGTGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGTGATTTGA
TAATGTGTTTTATGATGTTGTGATTGATTAGGGGTCAAAATGCAAATATGCAAAAATTTAAGGAC
TTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCAGAAACATGATCAACCATTTTGGCAT
GTTTTTTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAGTGAAAATTCTTGTA
AAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGCTGAATTGTTAAGTTGCAAATCAT
TTAGATAGCTTGGTGGAATTTTTTGAAATTGATAAAGATGATATTGTGCTTATTTTTGCCTTGAT
TTCTTGATTTATAAGTTAATTAATGAG
Found at i:464014 original size:486 final size:486
Alignment explanation
Indices: 463083--466197 Score: 4406
Period size: 486 Copynumber: 6.5 Consensus size: 486
463073 TTATGATTCG
* *
463083 AAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGCCAAAATGCA
1 AAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
*
463148 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
** * * * * * *
463213 CATGATCAA-CTATTGCGGCAGGTTTTTCTTGCTAATTTGAAATTAATTTAGATGCATGTTGAGC
131 CATGATCAATC-ATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGG
* * * *
463277 TGTTTGCATGAGAAAATTCTTGT---A-TGGGTGAAATTGT-ATTGCATGTATTTGTACCATGAT
195 TGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATT-TCATTGCATGTATTCGTATCATGAT
* ** * * * *
463337 GCTAAATTGTTGGGTTGCAAATTTTTTAAATAGGTTAGTCGAATCTGTTTGAAATGGATAAAGAT
259 GCTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
* **
463402 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTGTTGGTTATTTAATGAGATTTGAAATTAT
324 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
*
463467 AGGGATTAAATTGCAAAAATGAAAAGACATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTA
389 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTA
463532 AAGGATTTTTTTCCATGATTTGTGGATGGTTCC
454 AAGGATTTTTTTCCATGATTTGTGGATGGTTCC
* * *
463565 AAACTGAGTTGGCGATTTGATTATGTGTGTTTATGATGCTGTGATTGATTATGGGTCAAAATGCA
1 AAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
* *
463630 AATATGCAAAAATTTAAGGATTTGATTGTAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
* *
463695 CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGTTGTGTGATAAGGT
131 CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGT
* * * *
463760 GTTTGCAGGATAAAATTCTTGTAAAAGTAGGTGAAATTTCAGTGCATGTATTCGTATCATGGTGC
196 GTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGATGC
* * * **
463825 TAAATTGTTAAGTTGCAAGTCATTTAGATAGCTTGGTTGAATCTGTTTGGTATTGATAAAGATGA
261 TAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
* * * *
463890 TATTGTGCTTATTTTTCCCTTTATTTCTTGATTTAAAAGTTATTTAATGAGGTTTGAAATTATAG
326 TATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAG
*
463955 GGATTAAATTGCAAAAATGAAAAGACATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAA
391 GGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAA
464020 GGATTTTTTTCCATGATTTGTGGATGGTTCC
456 GGATTTTTTTCCATGATTTGTGGATGGTTCC
* * *
464051 AAACTGAGTTGGCGATTTGATTATGTGTGTTTATGATGCTGTGATTGATTATGGGTCAAAATGCA
1 AAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
* *
464116 AATATGCAAAAATTTAAGGATTTGATTGTAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
* *
464181 CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGTTGCATGATAAGGT
131 CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGT
* * * *
464246 GTTTGCAGGATAAAATTCTTGTAAAAGTAGGTGAAATTTCAGTGCATGTATTCGTATCATGGTGC
196 GTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGATGC
* * * **
464311 TAAATTGTTAAGTTGCAAGTCATTTAGATAGCTTGGTTGAATCTGTTTGGTATTGATAAAGATGA
261 TAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
* * * *
464376 TATTGTGCTTATTTTTCCCTTTATTTCTTGATTTAAAAGTTATTTAATGAGGTTTGAAATTATAG
326 TATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAG
* * *
464441 GGATTAAATTGCAAAAATGAAAAGTCATGCTTTGTGGCCAAAAGTATTAGACCAAGCCTTGTAAA
391 GGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAA
* * * *
464506 GGACTTTCTCTCCATGATTTATGGACGGTTCC
456 GGA-TTTTTTTCCATGATTTGTGGATGGTTCC
* * * * * * *
464538 AAGCTGATTTGGTGATTTGATTATGCGT-TTTAGGGATGTTGTTATTGATAAGGGGTTAAAATGC
1 AAACTGATTTGGTGATTTGATTATGTGTGTTTA-TGATGTTGTGATTGATTATGGGTCAAAATGC
* * *
464602 GAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTTTTTAGCCGAA
65 AAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* * *
464667 ACATGGTCAA-CTATTTTGGCATGTTTTTTTTGCTGATTTGAAATTAATTTAGATGCGTGATGAG
130 ACATGATCAATC-ATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAG
* * * * * *
464731 ATGTTTGCATGAGAAAATTCTTATAAAAGTAGGTGAAATTTTATTGCATGTATTTGTACCATGAT
194 GTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGAT
* * * * * * *
464796 ACTGAATTGTTGGGCTGCAAATTATTTAGATAGCTTGGTGGAATTTGTTTGAAATTGAT-AA-A-
259 GCTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
*
464858 G--A---TG---ATTTTTGCCTTGATTTCTTGATTTTTAAGTTATTTAATGAGATTTGAAATTAT
324 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
* * *
464915 AGGGATTAAATTACAAAAATGAAAAGCCATGCTTTATGGCCAAAAGTATTTGA-CTAAGCCTTAT
389 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATC-AAGCCTTGT
*
464979 AAAGGATTTTTTTCCATGACTTGTGGATGGTTCC
453 AAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
* * * * * *
465013 AAGCTGGTTTTGTGAATTGATTATGTGT-TTTAATGATATTGTGATTGATTAGGGGTCAAAATGC
1 AAACTGATTTGGTGATTTGATTATGTGTGTTT-ATGATGTTGTGATTGATTATGGGTCAAAATGC
* * * *
465077 AAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTCTGTTCCATGAAATTTCATATTTAGCTGAA
65 AAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* * *
465142 ACATGATC-ATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATACGTGATAAG
130 ACATGATCAAT-CATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAG
* *
465206 GTGTTTGCAAGAAAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGT
194 GTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGAT
* *
465271 GCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTGGAATCTGTTTGAAATTGATAAAGAT
259 GCTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
465336 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
324 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
* * * * * * **
465401 AGAGACTAAATTGCAAAAATGAAGAGTCATGCTTTATGGCCAAAACTCTTTGACCGTGCCTTGTA
389 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTA
465466 AAGGATTTTTTTCCATGATTTGTGGATGGTT-C
454 AAGGATTTTTTTCCATGATTTGTGGATGGTTCC
* * *
465498 AAGCTGATTTGGTGATTTGATTATGTGT-TTTAACGATGTTGTGATTGATTAGGGGTC---A---
1 AAACTGATTTGGTGATTTGATTATGTGTGTTT-ATGATGTTGTGATTGATTATGGGTCAAAATGC
* * * * *
465556 AAATACGTAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTTCATGAAATTTCATATTTAGCCGAA
65 AAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* *
465621 ACATGATCAACCATTTTGGCAT-TTTTT-TTGCTGATTTGAAATTAATTTAGATGCGTGATGAGG
130 ACATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGG
* * * *
465684 TGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTGATTGCATGTATTTGTATGATGATT
195 TGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGATG
* * * * * *
465749 TTGAATTGTTGAGTTGCAAATCATTTAGATTGCTTGATCGAATTTGTTTGAAATTGATATAGATG
260 CTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATG
* * * * *
465814 ATATTGTGCATATTTTTGCCTTGTTTTGTTGATTTATAGGTTATTTAAAGAGATTTGAAATTATA
325 ATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATA
* *
465879 GGGATTAAATTGTAAACATGAAAAGTCATG-TTTATGGCCAAAAGTATTTGATCAAGCCTTGTAA
390 GGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAA
* *
465943 AAGATTTTTTTCCATGATTTGTGAATGGTTCC
455 AGGATTTTTTTCCATGATTTGTGGATGGTTCC
*
465975 AAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
1 AAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
* *
466040 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTATTCCCTGAAATTTCTTATTTAGCCGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
* * * * *
466105 CTTGATCAACCATTTTGACTTGTTTTTCTTGCTGACTTGAAATTAATTTAGATGCGTGATAAGGT
131 CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGT
*
466170 GTTTGCAAGAGAAAATTCTTATAAAAGT
196 GTTTGCAAGAGAAAATTCTTGTAAAAGT
466198 CATTCTTTAT
Statistics
Matches: 2383, Mismatches: 214, Indels: 69
0.89 0.08 0.03
Matches are distributed among these distances:
474 1 0.00
475 302 0.13
476 172 0.07
477 288 0.12
478 9 0.00
479 79 0.03
480 3 0.00
482 198 0.08
483 80 0.03
484 6 0.00
485 118 0.05
486 832 0.35
487 295 0.12
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (486 bp):
AAACTGATTTGGTGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
CATGATCAATCATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCGTGATAAGGT
GTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGATGC
TAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
TATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAG
GGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAA
GGATTTTTTTCCATGATTTGTGGATGGTTCC
Found at i:465177 original size:962 final size:965
Alignment explanation
Indices: 463083--466197 Score: 4403
Period size: 962 Copynumber: 3.2 Consensus size: 965
463073 TTATGATTCG
* * *
463083 AAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGCCAAAATGCA
1 AAACTGGTTTGGCGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
*
463148 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCTGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
* * * * * * * * *
463213 CATGATCA-ACTATTGCGGCAGGTTTTTCTTGCTAATTTGAAATTAATTTAGATGCATGTTGAGC
131 CATGATCATCCAATT-TGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATAAGG
* * * * *
463277 TGTTTGCATGAGAAAATTCTTGT---A-TGGGTGAAATTGT-ATTGCATGTATTTGTACCATGAT
195 TGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATT-TCATTGCATGTATTCGTATCATGGT
* ** * * * *
463337 GCTAAATTGTTGGGTTGCAAATTTTTTAAATAGGTTAGTCGAATCTGTTTGAAATGGATAAAGAT
259 GCTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
* **
463402 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTGTTGGTTATTTAATGAGATTTGAAATTAT
324 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
* *
463467 AGGGATTAAATTGCAAAAATGAAAAGACATGCTTTATGGCCAAAAGTATTTGATCAAGCCTTGTA
389 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTA
* * *
463532 AAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAACTGAGTTGGCGATTTGATTATGTGTGTTT
454 AAGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGT-TTT
* * * * * * *
463597 ATGATGCTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGATTGTAAA
518 ACGATGTTGTGATTGATTAGGGGTCAAAATGCGAATATGCAAAAATTTAAGGACTTGGTTGCAAA
*
463662 GTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAA-TCATTTTGGCATGTTTTTCTTG
583 GTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACT-ATTTTGGCATGTTTTTTTTG
* * * * *
463726 CTGATTTGAAATTAATTTAGTTGTGTGATAAGGTGTTTGCAGGATAAAATTCTTGTAAAAGTAGG
647 CTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGG
* * * * * * *
463791 TGAAATTTCAGTGCATGTATTCGTATCATGGTGCTAAATTGTTAAGTTGCAAGTCATTTAGATAG
712 TGAAATTTCATTGCATGTATTTGTATCATGATACTGAATTGTTGAGTTGCAAATCATTTAGATAG
* * ** * *
463856 CTTGGTTGAATCTGTTTGGTATTGATAAAGATGATATTGTGCTTATTTTTCCCTTTATTTCTTGA
777 CTTGGTCGAATTTGTTTGAAATTGAT-AAGATGA-A-T-TG--TATTTTTGCCTTGATTTCTTGA
* *
463921 TTTAAAAGTTATTTAATGAGGTTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGACATGCT
836 TTTATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGACATGCT
463986 TTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
901 TTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
*
464051 AAACTGAG-TTGGCGATTTGATTATGTGTGTTTATGATGCTGTGATTGATTATGGGTCAAAATGC
1 AAACTG-GTTTGGCGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGC
* *
464115 AAATATGCAAAAATTTAAGGATTTGATTGTAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
65 AAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* * *
464180 ACATGATCAAT-CATTTTGGCATGTTTTTCTTGCTGATTTGAAATTAATTTAGTTGCATGATAAG
130 ACATGATC-ATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATAAG
* * *
464244 GTGTTTGCAGGATAAAATTCTTGTAAAAGTAGGTGAAATTTCAGTGCATGTATTCGTATCATGGT
194 GTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGT
* * * **
464309 GCTAAATTGTTAAGTTGCAAGTCATTTAGATAGCTTGGTTGAATCTGTTTGGTATTGATAAAGAT
259 GCTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGAT
* * * *
464374 GATATTGTGCTTATTTTTCCCTTTATTTCTTGATTTAAAAGTTATTTAATGAGGTTTGAAATTAT
324 GATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTAT
* *
464439 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTGTGGCCAAAAGTATTAGACCAAGCCTTGTA
389 AGGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTA
* * * * *
464504 AAGGACTTTCTCTCCATGATTTATGGACGGTTCCAAGCTGATTTGGTGATTTGATTATGCGTTTT
454 AAGGA-TTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTT
* * * *
464569 AGGGATGTTGTTATTGATAAGGGGTTAAAATGCGAATATGCAAAAATTTAAGGACTTGGTTGCAA
518 A-CGATGTTGTGATTGATTAGGGGTCAAAATGCGAATATGCAAAAATTTAAGGACTTGGTTGCAA
* *
464634 AGTTTGTTCCATGAAATTTCTTTTTTAGCCGAAACATGGTCAACTATTTTGGCATGTTTTTTTTG
582 AGTTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACTATTTTGGCATGTTTTTTTTG
* * *
464699 CTGATTTGAAATTAATTTAGATGCGTGATGAGATGTTTGCATGAGAAAATTCTTATAAAAGTAGG
647 CTGATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGG
* * * * *
464764 TGAAATTTTATTGCATGTATTTGTACCATGATACTGAATTGTTGGGCTGCAAATTATTTAGATAG
712 TGAAATTTCATTGCATGTATTTGTATCATGATACTGAATTGTTGAGTTGCAAATCATTTAGATAG
* *
464829 CTTGGTGGAATTTGTTTGAAATTGATAA-A-G-A-TG-ATTTTTGCCTTGATTTCTTGATTTTTA
777 CTTGGTCGAATTTGTTTGAAATTGATAAGATGAATTGTATTTTTGCCTTGATTTCTTGATTTATA
* *
464889 AGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTACAAAAATGAAAAGCCATGCTTTATGG
842 AGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGACATGCTTTATGG
* *
464954 CCAAAAGTATTTGA-CTAAGCCTTATAAAGGATTTTTTTCCATGACTTGTGGATGGTTCC
907 CCAAAAGTATTTGATC-AAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
* * * * * *
465013 AAGCTGGTTTTGTGAATTGATTATGTGT-TTTAATGATATTGTGATTGATTAGGGGTCAAAATGC
1 AAACTGGTTTGGCGATTTGATTATGTGTGTTT-ATGATGTTGTGATTGATTATGGGTCAAAATGC
* * * *
465077 AAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTCTGTTCCATGAAATTTCATATTTAGCTGAA
65 AAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAA
* *
465142 ACATGATCATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATACGTGATAAGG
130 ACATGATCATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATAAGG
*
465207 TGTTTGCAAGAAAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTG
195 TGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTG
* *
465272 CTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTGGAATCTGTTTGAAATTGATAAAGATG
260 CTAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATG
465337 ATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATA
325 ATATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATA
* * * * * **
465402 GAGACTAAATTGCAAAAATGAAGAGTCATGCTTTATGGCCAAAACTCTTTGACCGTGCCTTGTAA
390 GGGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAA
465467 AGGATTTTTTTCCATGATTTGTGGATGGTT-CAAGCTGATTTGGTGATTTGATTATGTGTTTTAA
455 AGGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTT-A
*
465531 CGATGTTGTGATTGATTAGGGGTCAAAATACG----T--AAAAATTTAAGGACTTGGTTGCAAAG
519 CGATGTTGTGATTGATTAGGGGTCAAAATGCGAATATGCAAAAATTTAAGGACTTGGTTGCAAAG
* * *
465590 TTTGTTTCATGAAATTTCATATTTAGCCGAAACATGATCAACCATTTTGGCA--TTTTTTTTGCT
584 TTTGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACTATTTTGGCATGTTTTTTTTGCT
465653 GATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTG
649 GATTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTG
* * ** *
465718 AAATTTGATTGCATGTATTTGTATGATGATTTTGAATTGTTGAGTTGCAAATCATTTAGATTGCT
714 AAATTTCATTGCATGTATTTGTATCATGATACTGAATTGTTGAGTTGCAAATCATTTAGATAGCT
* * *
465783 TGATCGAATTTGTTTGAAATTGATATAGATGATATTGTGCATATTTTTGCCTTGTTTTGTTGATT
779 TGGTCGAATTTGTTTGAAATTGATA-AGATGA-A-T-TG--TATTTTTGCCTTGATTTCTTGATT
* * * * *
465848 TATAGGTTATTTAAAGAGATTTGAAATTATAGGGATTAAATTGTAAACATGAAAAGTCATG-TTT
838 TATAAGTTATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGACATGCTTT
* *
465912 ATGGCCAAAAGTATTTGATCAAGCCTTGTAAAAGATTTTTTTCCATGATTTGTGAATGGTTCC
903 ATGGCCAAAAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
* *
465975 AAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
1 AAACTGGTTTGGCGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
* *
466040 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTATTCCCTGAAATTTCTTATTTAGCCGAAA
66 AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
* * * * * *
466105 CTTGATCAACC-ATTTTGACTTGTTTTTCTTGCTGACTTGAAATTAATTTAGATGCGTGATAAGG
131 CATGATCATCCAATTTGGA-ATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATAAGG
*
466169 TGTTTGCAAGAGAAAATTCTTATAAAAGT
195 TGTTTGCAAGAGAAAATTCTTGTAAAAGT
466198 CATTCTTTAT
Statistics
Matches: 1915, Mismatches: 202, Indels: 66
0.88 0.09 0.03
Matches are distributed among these distances:
952 152 0.08
953 1 0.00
954 74 0.04
955 1 0.00
956 1 0.00
957 1 0.00
960 60 0.03
961 36 0.02
962 800 0.42
963 79 0.04
965 2 0.00
968 193 0.10
969 4 0.00
970 1 0.00
971 3 0.00
972 212 0.11
973 294 0.15
974 1 0.00
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (965 bp):
AAACTGGTTTGGCGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGGGTCAAAATGCA
AATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTGTTCCATGAAATTTCTTATTTAGCCGAAA
CATGATCATCCAATTTGGAATGTTTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATAAGGT
GTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTCATTGCATGTATTCGTATCATGGTGC
TAAATTGTTGAGTTGCAAATCATTTAGATAGCTTGGTCGAATCTGTTTGAAATTGATAAAGATGA
TATTGTGCTTATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAATTATAG
GGATTAAATTGCAAAAATGAAAAGTCATGCTTTATGGCCAAAAGTATTTGACCAAGCCTTGTAAA
GGATTTTTTTCCATGATTTGTGGATGGTTCCAAGCTGATTTGGTGATTTGATTATGTGTTTTACG
ATGTTGTGATTGATTAGGGGTCAAAATGCGAATATGCAAAAATTTAAGGACTTGGTTGCAAAGTT
TGTTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACTATTTTGGCATGTTTTTTTTGCTGA
TTTGAAATTAATTTAGATGCGTGATGAGGTGTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAA
ATTTCATTGCATGTATTTGTATCATGATACTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTG
GTCGAATTTGTTTGAAATTGATAAGATGAATTGTATTTTTGCCTTGATTTCTTGATTTATAAGTT
ATTTAATGAGATTTGAAATTATAGGGATTAAATTGCAAAAATGAAAAGACATGCTTTATGGCCAA
AAGTATTTGATCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTGGATGGTTCC
Found at i:466479 original size:295 final size:293
Alignment explanation
Indices: 465899--466490 Score: 801
Period size: 295 Copynumber: 2.0 Consensus size: 293
465889 TGTAAACATG
* * *
465899 AAAAGTCATGTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAAGATTTTTTTCCATGATTTG
1 AAAAGTCATCTTTATGGCCAAAAGTATTAGACCAAGCCTTGTAAAAGATTTTTTTCCATGATTTG
* * *
465964 TGAATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTTGTGATTGATTATGG
66 TGAATGGTTCCAAACTGATTTGGGGATTAGATTATGTGTGTTTATGAAGTTGTGATTGATTAGGG
* ** * * *
466029 GTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTTTATTCCCTGAAATTTCTTA
131 GTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGAAGCAAAGTTTACTCCATGAAAATTCTTA
* * ** *
466094 TTTAGCCGAAACTTGATCAACCATTTTGACTTGTTTTTCTTGCTGACTTGAAATTAATTTAGATG
196 TTTAGCCGAAACATGATCAACCATATTGACAGGATTTTCTTGCTGACTTGAAATTAATTTAGATG
* * *
466159 CGTGATAAGGTGTTTGCAAGAGAAAATTCTTAT
261 CATGATAAGCTATTTGCAAGAGAAAATTCTTAT
* * * *
466192 AAAAGTCATTCTTTATGGGCAAAAGTGTTAGACCAAGCCTTGTAAAGGACTTTTTTTCCATTATT
1 AAAAGTCA-TCTTTATGGCCAAAAGTATTAGACCAAGCCTTGTAAAAGA-TTTTTTTCCATGATT
* * * * *
466257 TGTGGATGGTTCCAAGCTGATTTGGTGATTAGATTCTGTGTTTTTATGAAGTTGTGATTGATTAG
64 TGTGAATGGTTCCAAACTGATTTGGGGATTAGATTATGTGTGTTTATGAAGTTGTGATTGATTAG
* *
466322 GGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGAAGCCAAGTTTGCTCCATGAAAATTCT
129 GGGTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGAAGCAAAGTTTACTCCATGAAAATTCT
* *
466387 TATTTAGCTGAAACATGATCAA-C-TATTGCAGCAGGATTTTCTTGCTGATTTGAAATTAATTTA
194 TATTTAGCCGAAACATGATCAACCATATTG-A-CAGGATTTTCTTGCTGACTTGAAATTAATTTA
* * * *
466450 GATGCATGTTGAGCTATTTGCATGAGAAAATTCTTGT
257 GATGCATGATAAGCTATTTGCAAGAGAAAATTCTTAT
466487 AAAA
1 AAAA
466491 ATAGATGAAA
Statistics
Matches: 258, Mismatches: 37, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
293 12 0.05
294 36 0.14
295 210 0.81
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.38
Consensus pattern (293 bp):
AAAAGTCATCTTTATGGCCAAAAGTATTAGACCAAGCCTTGTAAAAGATTTTTTTCCATGATTTG
TGAATGGTTCCAAACTGATTTGGGGATTAGATTATGTGTGTTTATGAAGTTGTGATTGATTAGGG
GTCAAAATGCAAATATGCAAAAATTTAAGGACTTGGAAGCAAAGTTTACTCCATGAAAATTCTTA
TTTAGCCGAAACATGATCAACCATATTGACAGGATTTTCTTGCTGACTTGAAATTAATTTAGATG
CATGATAAGCTATTTGCAAGAGAAAATTCTTAT
Found at i:466781 original size:770 final size:765
Alignment explanation
Indices: 465425--466891 Score: 2145
Period size: 770 Copynumber: 1.9 Consensus size: 765
465415 AAAAATGAAG
* **
465425 AGTCATGCTTTATGGCCAAAACTCTTTGACCGTGCCTTGTAAAGGATTTTTTTCCATGATTTGTG
1 AGTCATGCTTTATGGCCAAAACTCTTAGACCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTG
* *
465490 GATGGTTCAAGCTGATTTGGTGATTTGATTATGTGTTTTAACGATGTTGTGATTGATTAGGGGTC
66 GATGGTTCAAGCTGATTTGGTGATTAGATTATGTGTTTTAACGAAGTTGTGATTGATTAGGGGTC
* ** * * *
465555 AAAATACGTAAAAATTTAAGGACTTGGTTGCAAAGTTTGTTTCATGAAATTTCATATTTAGCCGA
131 AAAATACGCAAAAATTTAAGGACTTGGAAGCAAAGTTTGCTCCATGAAAATTCATATTTAGCCGA
*** * * * *
465620 AACATGATCAACCATTTTGGCATTTTTTTTGCTGATTTGAAATTAATTTAGATGCGTGATGAGGT
196 AACATGATCAACCATTGCAGCAATTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATGAGCT
* * * * ** ***
465685 GTTTGCAAGAGAAAATTCTTGTAAAAGTAGGTGAAATTTGATTGCATGTATTTGTATGATGATTT
261 ATTTGCAAGAGAAAATTCTTGTAAAAATAGATGAAATTTGAGTGCATGTATTTGTACCATGAGGC
* *
465750 TGAATTGTTGAGTTGCAAATCATTTAGATTGCTTGATCGAATTTGTTTGAAATTGATATAGATGA
326 TGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGATCGAATCTGTTTGAAATTGATATAGATGA
* * *
465815 TATTGTGCATATTTTTGCCTTGTTTTGTTGATTTATAGGTTATTTAAAGAGATTTGAAATTATAG
391 -A-T-TG-A-ATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAG
*
465880 GGATTAAATTGTAAACATGAAAAGTCATGTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAA
451 AGATTAAATTGTAAACATGAAAAGTCATGTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAA
465945 GATTTTTTTCCATGATTTGTGAATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATG
516 GATTTTTTTCCATGATTTGTGAATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATG
* *
466010 ATGTTGTGATTGATTATGGGTCAAAATGCAAATATGCAAAAATTTAAGGATTTGGTTGCAAAGTT
581 ATGTTGTGATTGATTATGGGTCAAAACGCAAATAGGCAAAAATTTAAGGATTTGGTTGCAAAGTT
* *
466075 TATTCCCTGAAATTTCTTATTTAGCCGAAACTTGATCAACCATTTTGACTTGTTTTTCTTGCTGA
646 TATTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGACTTGTTTTTCTTGCTGA
466140 CTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTATAAA
711 CTTGAAATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTATAAA
* * * * *
466195 AGTCATTCTTTATGGGCAAAAGTGTTAGACCAAGCCTTGTAAAGGACTTTTTTTCCATTATTTGT
1 AGTCATGCTTTATGGCCAAAACTCTTAGACCAAGCCTTGTAAAGGA-TTTTTTTCCATGATTTGT
* * *
466260 GGATGGTTCCAAGCTGATTTGGTGATTAGATTCTGTGTTTTTATGAAGTTGTGATTGATTAGGGG
65 GGATGGTT-CAAGCTGATTTGGTGATTAGATTATGTGTTTTAACGAAGTTGTGATTGATTAGGGG
* * *
466325 TCAAAATGCAAATATGCAAAAATTTAAGGACTTGGAAGCCAAGTTTGCTCCATGAAAATTCTTAT
129 TC---A---AAATACGCAAAAATTTAAGGACTTGGAAGCAAAGTTTGCTCCATGAAAATTCATAT
* *
466390 TTAGCTGAAACATGATCAACTATTGCAGCAGGATTTTCTTGCTGATTTGAAATTAATTTAGATGC
188 TTAGCCGAAACATGATCAACCATTGCAGCA--ATTTTCTTGCTGATTTGAAATTAATTTAGATGC
* * *
466455 ATGTTGAGCTATTTGCATGAGAAAATTCTTGTAAAAATAGATGAAATTTTAGTGCATGTATTTGT
251 ATGATGAGCTATTTGCAAGAGAAAATTCTTGTAAAAATAGATGAAATTTGAGTGCATGTATTTGT
* ** *
466520 ACCATGAGGCTGAATTGTTGGGTTGCAAATTTTTTAGATAGCTTGGTCGAATCTGTTTGAAATTG
316 ACCATGAGGCTGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGATCGAATCTGTTTGAAATTG
*
466585 ATA-A-A-G-A-TG-ATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAATGAGATTTGAAAT
381 ATATAGATGAATTGAATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAAT
* * *
466644 TATAGAGTTTAAATTGTAAATATGACAAGTCATGCTTTATGGCCAAAAGTATTTGATCAAGCCTT
446 TATAGAGATTAAATTGTAAACATGAAAAGTCATG-TTTATGGCCAAAAGTATTTGATCAAGCCTT
*
466709 GTAAAAGATTTTTTTCCATGATTTGTGGATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTG
510 GTAAAAGATTTTTTTCCATGATTTGTGAATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTG
* *
466774 TTTATGATGTTGTGATTTATTATGGGTCAAAACGCAAATAGGTAAAAATTTAAGGATTTGGTTGC
575 TTTATGATGTTGTGATTGATTATGGGTCAAAACGCAAATAGGCAAAAATTTAAGGATTTGGTTGC
* * *
466839 AAAGTTTGTTCCATGAAATTTCTTTTTTAGTCGAAACATGATCAACCATTTTG
640 AAAGTTTATTCCATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTG
466892 GCATGGACAT
Statistics
Matches: 619, Mismatches: 67, Indels: 22
0.87 0.09 0.03
Matches are distributed among these distances:
769 76 0.12
770 242 0.39
771 25 0.04
772 55 0.09
775 2 0.00
777 1 0.00
778 73 0.12
779 1 0.00
780 144 0.23
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.40
Consensus pattern (765 bp):
AGTCATGCTTTATGGCCAAAACTCTTAGACCAAGCCTTGTAAAGGATTTTTTTCCATGATTTGTG
GATGGTTCAAGCTGATTTGGTGATTAGATTATGTGTTTTAACGAAGTTGTGATTGATTAGGGGTC
AAAATACGCAAAAATTTAAGGACTTGGAAGCAAAGTTTGCTCCATGAAAATTCATATTTAGCCGA
AACATGATCAACCATTGCAGCAATTTTCTTGCTGATTTGAAATTAATTTAGATGCATGATGAGCT
ATTTGCAAGAGAAAATTCTTGTAAAAATAGATGAAATTTGAGTGCATGTATTTGTACCATGAGGC
TGAATTGTTGAGTTGCAAATCATTTAGATAGCTTGATCGAATCTGTTTGAAATTGATATAGATGA
ATTGAATTTTTGCCTTGATTTCTTGATTTATAAGTTATTTAAAGAGATTTGAAATTATAGAGATT
AAATTGTAAACATGAAAAGTCATGTTTATGGCCAAAAGTATTTGATCAAGCCTTGTAAAAGATTT
TTTTCCATGATTTGTGAATGGTTCCAAACTGATTTGGGGATTTGATTATGTGTGTTTATGATGTT
GTGATTGATTATGGGTCAAAACGCAAATAGGCAAAAATTTAAGGATTTGGTTGCAAAGTTTATTC
CATGAAATTTCTTATTTAGCCGAAACATGATCAACCATTTTGACTTGTTTTTCTTGCTGACTTGA
AATTAATTTAGATGCGTGATAAGGTGTTTGCAAGAGAAAATTCTTATAAA
Found at i:468021 original size:13 final size:13
Alignment explanation
Indices: 468003--468056 Score: 58
Period size: 13 Copynumber: 4.3 Consensus size: 13
467993 ACCTTCTTTT
468003 AAAAAAAAC--AA
1 AAAAAAAACAAAA
468014 AAAAAAAACAAAA
1 AAAAAAAACAAAA
* *
468027 AAACAAAACAAAG
1 AAAAAAAACAAAA
* *
468040 AAAACAAAGAAAA
1 AAAAAAAACAAAA
468053 AAAA
1 AAAA
468057 GAGAAAGAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 9 0.26
13 26 0.74
ACGTcount: A:0.87, C:0.09, G:0.04, T:0.00
Consensus pattern (13 bp):
AAAAAAAACAAAA
Found at i:468057 original size:9 final size:9
Alignment explanation
Indices: 468003--468072 Score: 68
Period size: 9 Copynumber: 7.4 Consensus size: 9
467993 ACCTTCTTTT
*
468003 AAAAAAAAC
1 AAAAAAAAG
*
468012 AAAAAAAAA
1 AAAAAAAAG
*
468021 ACAAAAAAAC
1 A-AAAAAAAG
*
468031 AAAACAAAG
1 AAAAAAAAG
*
468040 AAAACAAAG
1 AAAAAAAAG
468049 AAAAAAAAG
1 AAAAAAAAG
468058 AGAAAGAAAAG
1 A-AAA-AAAAG
468069 AAAA
1 AAAA
468073 GAACCTGCTT
Statistics
Matches: 53, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
9 33 0.62
10 14 0.26
11 6 0.11
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:468063 original size:24 final size:22
Alignment explanation
Indices: 468003--468072 Score: 70
Period size: 21 Copynumber: 3.1 Consensus size: 22
467993 ACCTTCTTTT
*
468003 AAAAAAAACAAAAAA-AAAACA
1 AAAAAAAAAAAAAAAGAAAACA
* *
468024 AAAAAACAAAACAAAGAAAACA
1 AAAAAAAAAAAAAAAGAAAACA
* *
468046 AAGAAAAAAAAGAGAAAGAAAAGA
1 AA-AAAAAAAA-AAAAAGAAAACA
468070 AAA
1 AAA
468073 GAACCTGCTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
21 12 0.30
22 8 0.20
23 8 0.20
24 12 0.30
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (22 bp):
AAAAAAAAAAAAAAAGAAAACA
Found at i:468065 original size:15 final size:16
Alignment explanation
Indices: 468045--468074 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
468035 CAAAGAAAAC
468045 AAAGAAAA-AAAAGAG
1 AAAGAAAAGAAAAGAG
468060 AAAGAAAAGAAAAGA
1 AAAGAAAAGAAAAGA
468075 ACCTGCTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (16 bp):
AAAGAAAAGAAAAGAG
Found at i:469156 original size:55 final size:55
Alignment explanation
Indices: 469072--469182 Score: 186
Period size: 55 Copynumber: 2.0 Consensus size: 55
469062 GATGCCTTCT
* * * *
469072 CCTTTTAAAGCCCACATAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGACG
1 CCTTTTAAAGCCCACACAAGTTGATGGCACTTCCCAGCCCTCAAAGAGCAGGACG
469127 CCTTTTAAAGCCCACACAAGTTGATGGCACTTCCCAGCCCTCAAAGAGCAGGACG
1 CCTTTTAAAGCCCACACAAGTTGATGGCACTTCCCAGCCCTCAAAGAGCAGGACG
469182 C
1 C
469183 TCTCTCCTTT
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.21
Consensus pattern (55 bp):
CCTTTTAAAGCCCACACAAGTTGATGGCACTTCCCAGCCCTCAAAGAGCAGGACG
Found at i:469465 original size:61 final size:61
Alignment explanation
Indices: 469193--469695 Score: 523
Period size: 61 Copynumber: 8.4 Consensus size: 61
469183 TCTCTCCTTT
* * *
469193 CACCTTTTAGTCCTCAAGGAGCAGGATGCC-TTT-C----AAAGCCCATACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
** *
469248 CATTTTCTAGTCCTCAAAGAGCAGGATGCC-TTT-C----AAAGCCCACACAAGCTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
469303 CAGCTTC-AGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * **
469363 TACTTTTCTAGTCCTCAAAGAATAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CAC-CTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
469425 CACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * *
469486 CACTTTTCTAATCCTCAAAAAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
1 CAC-CTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* * * * ** *
469548 CACCTCCCAGTCCTCAAAGAGCAAGATG-TTTTCTCCTTGCAAAGCCCATACAAGTTGGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGG
* * * ** * * *
469609 CACCGTCTAGTCCTCAAAGAGTAGGATG-TTTTCTCCTTGCAAAGCCCATACAAGCTAGTGG
1 CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGG
** * *
469670 CACCGGCTAGTCCCCAAGGAGCAGGA
1 CACCTTCTAGTCCTCAAAGAGCAGGA
469696 CCCATTTCAT
Statistics
Matches: 388, Mismatches: 50, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
54 20 0.05
55 57 0.15
56 1 0.00
60 24 0.06
61 178 0.46
62 108 0.28
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (61 bp):
CACCTTCTAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:469479 original size:123 final size:123
Alignment explanation
Indices: 469221--469695 Score: 542
Period size: 123 Copynumber: 3.9 Consensus size: 123
469211 GAGCAGGATG
* * *
469221 CCTTTCAAAGCCCATACAAGTTGGTGGCA-TTTTCTAGTCCTCAAAGAGCAGGATGCC-TTT-C-
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAACAGGATGCCTTTTCCT
* * * *
469282 ---AAAGCCCACACAAGCTGGTGGCAGCTTC-AGTCCTCAAAGAGTAGGACGCCTTTT
66 TTTAAAGCCCACACAAGCTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTTT
* *
469336 CCTTTTAAAGCCCACACAAGTTGGTGGTACTTTTCTAGTCCTCAAAGAATAGGATGCCTTTTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAACAGGATGCCTTTTCCT
*
469401 TTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTTT
66 TTTAAAGCCCACACAAGCTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTTT
* *
469459 CTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAATCCTCAAA-AAGCAGGATGCCTTTTCC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAA-CAGGATGCCTTTTCC
* * * * *
469523 TTTTAAAGCCCACACAAGTTGGTGGCACCTCCCAGTCCTCAAAGAGCAAGATG-TTTTCT
65 TTTTAAAGCCCACACAAGCTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTT-T
** * ** ** *
469582 CCTTGCAAAGCCCATACAAGTTGGTGGCAC-CGTCTAGTCCTCAAAGAGTAGGATG-TTTTCTCC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAACAGGATGCCTTT-TCC
** * * ** * *
469645 TTGCAAAGCCCATACAAGCTAGTGGCACCGGCTAGTCCCCAAGGAGCAGGA
65 TTTTAAAGCCCACACAAGCTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGA
469696 CCCATTTCAT
Statistics
Matches: 309, Mismatches: 39, Indels: 17
0.85 0.11 0.05
Matches are distributed among these distances:
115 26 0.08
116 26 0.08
117 3 0.01
118 1 0.00
121 3 0.01
122 93 0.30
123 157 0.51
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (123 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAACAGGATGCCTTTTCCT
TTTAAAGCCCACACAAGCTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGAAGCTTTTT
Found at i:470348 original size:13 final size:13
Alignment explanation
Indices: 470332--470361 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
470322 ATACATTGTT
470332 CATTGTATCGATA
1 CATTGTATCGATA
470345 CATTGTATCGATA
1 CATTGTATCGATA
470358 CATT
1 CATT
470362 CTGGGTTTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:470394 original size:42 final size:42
Alignment explanation
Indices: 470335--470432 Score: 187
Period size: 42 Copynumber: 2.3 Consensus size: 42
470325 CATTGTTCAT
470335 TGTATCGATACATTGTATCGATACATTCTGGGTTTACCCAGA
1 TGTATCGATACATTGTATCGATACATTCTGGGTTTACCCAGA
*
470377 TGTATCGATACATTGTATGGATACATTCTGGGTTTACCCAGA
1 TGTATCGATACATTGTATCGATACATTCTGGGTTTACCCAGA
470419 TGTATCGATACATT
1 TGTATCGATACATT
470433 TTTCAATGTA
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 55 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (42 bp):
TGTATCGATACATTGTATCGATACATTCTGGGTTTACCCAGA
Found at i:478607 original size:47 final size:47
Alignment explanation
Indices: 478461--478696 Score: 196
Period size: 47 Copynumber: 5.1 Consensus size: 47
478451 TGGTTGCTCA
* * *
478461 TGGAATTGTTGTCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGC
1 TGGAGTTGCTGTCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
* * * * * * **
478508 TAGAGTTACTGCCGGTT-ATCCATGGAAGCTGCTG-T--TGT-G-CTC
1 TGGAGTTGCTGTCGGTTGCT-CGTGGAAGCTGCTGCTGCCGTGGAAGC
* * * *
478550 ATGGAGTTGCTATCGGTTGCTCGTAGAAGTTGCTGCTACCGTGGAAGC
1 -TGGAGTTGCTGTCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
** * *
478598 TGGAGTTGCTGTCGGTTGCTTATGGAAGCTGCTGCTGCCATGGAACC
1 TGGAGTTGCTGTCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
* * * * *
478645 TAGAGTTGTTGCCAGTTGCTCGTGGAAGCTGCTACTGCCGTGGAAGC
1 TGGAGTTGCTGTCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
478692 TGGAG
1 TGGAG
478697 GAGGCTCGAG
Statistics
Matches: 142, Mismatches: 39, Indels: 16
0.72 0.20 0.08
Matches are distributed among these distances:
42 1 0.01
43 25 0.18
44 4 0.03
46 4 0.03
47 107 0.75
48 1 0.01
ACGTcount: A:0.17, C:0.20, G:0.34, T:0.30
Consensus pattern (47 bp):
TGGAGTTGCTGTCGGTTGCTCGTGGAAGCTGCTGCTGCCGTGGAAGC
Found at i:478614 original size:90 final size:90
Alignment explanation
Indices: 478455--478631 Score: 248
Period size: 90 Copynumber: 2.0 Consensus size: 90
478445 TGCTACTGGT
* * *
478455 TGCTCATGGAATTGTTGTCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGCTAGAGTTACTGC
1 TGCTCATGGAATTGCTATCGGTTGCTCGTAGAAGCTGCTGCTACCGTGGAAGCTAGAGTTACTGC
*
478520 CGGTT-ATCCATGGAAGCTGCTGTTG
66 CGGTTGCT-CATGGAAGCTGCTGTTG
* * * * *
478545 TGCTCATGGAGTTGCTATCGGTTGCTCGTAGAAGTTGCTGCTACCGTGGAAGCTGGAGTTGCTGT
1 TGCTCATGGAATTGCTATCGGTTGCTCGTAGAAGCTGCTGCTACCGTGGAAGCTAGAGTTACTGC
*
478610 CGGTTGCTTATGGAAGCTGCTG
66 CGGTTGCTCATGGAAGCTGCTG
478632 CTGCCATGGA
Statistics
Matches: 76, Mismatches: 10, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
90 75 0.99
91 1 0.01
ACGTcount: A:0.16, C:0.19, G:0.33, T:0.32
Consensus pattern (90 bp):
TGCTCATGGAATTGCTATCGGTTGCTCGTAGAAGCTGCTGCTACCGTGGAAGCTAGAGTTACTGC
CGGTTGCTCATGGAAGCTGCTGTTG
Found at i:478848 original size:16 final size:16
Alignment explanation
Indices: 478829--478871 Score: 70
Period size: 16 Copynumber: 2.7 Consensus size: 16
478819 GTGCTGGCTG
478829 CTTTCACGTTGCTGT-T
1 CTTTCACGTTGCT-TCT
478845 CTTTCACGTTGCTTCT
1 CTTTCACGTTGCTTCT
478861 CTTTCACGTTG
1 CTTTCACGTTG
478872 TCATGCTCCT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
15 1 0.04
16 25 0.96
ACGTcount: A:0.07, C:0.28, G:0.16, T:0.49
Consensus pattern (16 bp):
CTTTCACGTTGCTTCT
Found at i:480062 original size:42 final size:42
Alignment explanation
Indices: 480016--481077 Score: 929
Period size: 42 Copynumber: 25.3 Consensus size: 42
480006 TAAATGAGGT
** * * *
480016 AGTCTTCAACGTCAAAGCCGATAGGCAGACTGAGGGTAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * * *
480058 AGTCTCCAGGGTC-AAGACTGATAGGCAGACTAAGGGTAGAAT
1 AGTCTTCAGGGTCAAAG-CCGACAGGCAGACTAAGGGAAGAAA
* *
480100 AGTC-TCTAGGGTCAAAGCCGACAGGCAGACTACGGGAAGGAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * * * *
480142 ATTGTCCAGGATCAAAGCTGATAGGCAGACTAAGGGAAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * *
480184 AGTC-TCTAGAGTCAAAGCCGATAGGCAAACTAAGGGAAGAAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * * *
480226 AGTCTCCAGGGTCAAAGCCAACAGGCAAACTAATGGTAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * *
480268 AGT-TTCCAGGGTCAAAGCCGATAGGTAGATTAAGGGAAGAAA
1 AGTCTT-CAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * *
480310 AGTC-TCTAGGGTCAAAGCCGCCAAGCAGACTAAAGGAATG-AA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAA-GAAA
* * * * *
480352 AGTCTCCAGGGTCAAAGTCGACAGGAAAACTAAGGGAAGGAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * *
480394 AGTC-TCAGGGTCAAAGTCGACAAGCAAACTAAAGGAA-AGAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGA-AA
* * * *
480435 AGTCTCCAAGGTCAAAGCCGAGAGGCAGACAAAGGGAATG-AA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAA-GAAA
* * * * * *
480477 AGTCTCCAAGGTCAAAGCCGACAGGTAGGCTATGGGAAGGAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * *
480519 AGTCTTCAAGGTCAAAGTCAACAGGCAGACTAAGGGAAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * *
480561 AGTCTTTAGGATCAAAGCCGACAGGCAGATTAAGGGAA-AGAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGA-AA
* * * * * *
480603 AGTCTCCAGGGTCAAAGCCGATAAGCAAACTAATGGTAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * *
480645 AGTC-TCTAGGATCAAAGTCGACAAGCAAACTAAGGGAATG-AA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAA-GAAA
* * * * *
480687 AGTCTCCAGGGTCAAAGCCGATAGGCAAACTAATGGTAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * ** * *
480729 ATTCTCCAAGGTCAAAGTTGACAGGCAGATTAAGGGAAGGAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
*
480771 AGTC-TCTAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
*
480813 AGTC-TCTAGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAG-AAA
* * * *
480856 AGTC-TCTAGGGTCAAAGTCGACAGGCAGACTGAGGGTAGGAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
480898 AGTC-TCTAGGGTCAAAGCCGACAGGCAGACTAAGGGAA-AGAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGA-AA
** *
480940 AGTC-TCTAAAGTCAAAGCCGATAGGCAGACTAAGGGAAGAAA
1 AGTCTTC-AGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * * * *
480982 AGTCTCCAAGGTCAAAGCCAACAGGTAGACTGAGGGTAGAAA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
* * * *
481024 AGTCTCCAAGGTCAAAGCCGATAGGTAGACTAAAGGGAAG-AA
1 AGTCTTCAGGGTCAAAGCCGACAGGCAGACT-AAGGGAAGAAA
*
481066 AGTCTCCAGGGT
1 AGTCTTCAGGGT
481078 TTAATGAGAT
Statistics
Matches: 843, Mismatches: 148, Indels: 58
0.80 0.14 0.06
Matches are distributed among these distances:
41 48 0.06
42 738 0.88
43 57 0.07
ACGTcount: A:0.39, C:0.18, G:0.29, T:0.15
Consensus pattern (42 bp):
AGTCTTCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGAAA
Found at i:480117 original size:84 final size:83
Alignment explanation
Indices: 480026--481077 Score: 1104
Period size: 84 Copynumber: 12.5 Consensus size: 83
480016 AGTCTTCAAC
* * * *
480026 GTCAAAGCCGATAGGCAGACTGAGGGTAGAAAAGTCTCCAGGGTC-AAGACTGATAGGCAGACTA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAG-CCGACAGGCAGACTA
* *
480090 AGGGTAGAATAGTCTCTAGG
65 AGGGAAGAA-AGTCTCCAGG
* * * * * * * *
480110 GTCAAAGCCGACAGGCAGACTACGGGAAGGAAATTGTCCAGGATCAAAGCTGATAGGCAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* *
480175 GGGAAGAAAAGTCTCTAGA
66 GGGAAG-AAAGTCTCCAGG
* * *
480194 GTCAAAGCCGATAGGCAAACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCAACAGGCAAACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* * *
480259 TGGTAGAAAAGTTTCCAGG
66 GGGAAG-AAAGTCTCCAGG
* * * * *
480278 GTCAAAGCCGATAGGTAGATTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGCCAAGCAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
*
480343 AGGAATGAAAGTCTCCAGG
66 GGGAA-GAAAGTCTCCAGG
* * * * * * * *
480362 GTCAAAGTCGACAGGAAAACTAAGGGAAGGAAAGTCT-CAGGGTCAAAGTCGACAAGCAAACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACT-A
* *
480426 AGGAAAGAAAGTCTCCAAG
65 AGGGAAGAAAGTCTCCAGG
* * * * *
480445 GTCAAAGCCGAGAGGCAGACAAAGGGAATG-AAAGTCTCCAAGGTCAAAGCCGACAGGTAGGCTA
1 GTCAAAGCCGATAGGCAGACTAAGGGAA-GAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTA
* * *
480509 TGGGAAGGAAAGTCTTCAAG
65 AGGGAA-GAAAGTCTCCAGG
* * * ** * *
480529 GTCAAAGTCAACAGGCAGACTAAGGGAAGAAAAGTCTTTAGGATCAAAGCCGACAGGCAGATTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
480594 GGGAAAGAAAGTCTCCAGG
66 GGG-AAGAAAGTCTCCAGG
* * * * * * * * *
480613 GTCAAAGCCGATAAGCAAACTAATGGTAGAAAAGTCTCTAGGATCAAAGTCGACAAGCAAACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
480678 GGGAATGAAAGTCTCCAGG
66 GGGAA-GAAAGTCTCCAGG
* * * * * ** *
480697 GTCAAAGCCGATAGGCAAACTAATGGTAGAAAATTCTCCAAGGTCAAAGTTGACAGGCAGATTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
*
480762 GGGAAGGAAAGTCTCTAGG
66 GGGAA-GAAAGTCTCCAGG
* * *
480781 GTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* *
480846 GGGTAGAAAAAGTCTCTAGG
66 GGG-A-AGAAAGTCTCCAGG
* * * * * *
480866 GTCAAAGTCGACAGGCAGACTGAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* **
480931 GGGAAAGAAAGTCTCTAAA
66 GGG-AAGAAAGTCTCCAGG
* * * *
480950 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAAGGTCAAAGCCAACAGGTAGACTGA
1 GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
* *
481015 GGGTAGAAAAGTCTCCAAG
66 GGGAAG-AAAGTCTCCAGG
*
481034 GTCAAAGCCGATAGGTAGACTAAAGGGAAG-AAAGTCTCCAGGGT
1 GTCAAAGCCGATAGGCAGACT-AAGGGAAGAAAAGTCTCCAGGGT
481078 TTAATGAGAT
Statistics
Matches: 819, Mismatches: 135, Indels: 28
0.83 0.14 0.03
Matches are distributed among these distances:
83 73 0.09
84 650 0.79
85 95 0.12
86 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.29, T:0.15
Consensus pattern (83 bp):
GTCAAAGCCGATAGGCAGACTAAGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAA
GGGAAGAAAGTCTCCAGG
Found at i:480216 original size:126 final size:126
Alignment explanation
Indices: 480026--481077 Score: 1123
Period size: 126 Copynumber: 8.3 Consensus size: 126
480016 AGTCTTCAAC
* * * * *
480026 GTCAAAGCCGATAGGCAGACTGAGGGTAGAAAAGTCTCCAGGGTC-AAGACTGATAGGCAGACTA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAG-CCGATAGGCAGACTA
* * * * * *
480090 AGGGTAGAATAGTCTCTAGGGTCAAAGCCGACAGGCAGACTACGGGAAGGAAATTGTCCAGG
65 AGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * * * *
480152 ATCAAAGCTGATAGGCAGACTAAGGGAAGAAAAGTCTCTAGAGTCAAAGCCGATAGGCAAACTAA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAA
* * * * * *
480217 GGGAAGAAAAGTCTCCAGGGTCAAAGCCAACAGGCAAACTAATGGTAGAAAAGTTTCCAGG
66 GGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * * ** *
480278 GTCAAAGCCGATAGGTAGATTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGCCAAGCAGACTAA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAA
* * * *
480343 AGGAATG-AAAGTCTCCAGGGTCAAAGTCGACAGGAAAACTAAGGGAAGGAAAGTCT-CAGG
66 GGGAA-GAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * * * * * * *
480403 GTCAAAGTCGACAAGCAAACTAAAGGAA-AGAAAGTCTCCAAGGTCAAAGCCGAGAGGCAGACAA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGA-AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTA
* * * * * *
480467 AGGGAATG-AAAGTCTCCAAGGTCAAAGCCGACAGGTAGGCTATGGGAAGGAAAGTCTTCAAG
65 AGGGAA-GAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * * * * *
480529 GTCAAAGTCAACAGGCAGACTAAGGGAAGAAAAGTCTTTAGGATCAAAGCCGACAGGCAGATTAA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAA
* * * * * * *
480594 GGGAA-AGAAAGTCTCCAGGGTCAAAGCCGATAAGCAAACTAATGGTAGAAAAGTCTCTAGG
66 GGGAAGA-AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * * * * *
480655 ATCAAAGTCGACAAGCAAACTAAGGGAATG-AAAGTCTCCAGGGTCAAAGCCGATAGGCAAACTA
1 GTCAAAGCCGACAGGCAGACTAAGGGAA-GAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTA
* * * * ** * *
480719 ATGGTAGAAAATTCTCCAAGGTCAAAGTTGACAGGCAGATTAAGGGAAGGAAAGTCTCTAGG
65 AGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* *
480781 GTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTAA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAA
* * * * * *
480846 GGGTAGAAAAAGTCTCTAGGGTCAAAGTCGACAGGCAGACTGAGGGTAGGAAAGTCTCTAGG
66 GGGAAG-AAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
**
480908 GTCAAAGCCGACAGGCAGACTAAGGGAA-AGAAAGTCTCTAAAGTCAAAGCCGATAGGCAGACTA
1 GTCAAAGCCGACAGGCAGACTAAGGGAAGA-AAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTA
* * * * * * *
480972 AGGGAAGAAAAGTCTCCAAGGTCAAAGCCAACAGGTAGACTGAGGGTAGAAAAGTCTCCAAG
65 AGGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
* * *
481034 GTCAAAGCCGATAGGTAGACTAAAGGGAAG-AAAGTCTCCAGGGT
1 GTCAAAGCCGACAGGCAGACT-AAGGGAAGAAAAGTCTCTAGGGT
481078 TTAATGAGAT
Statistics
Matches: 775, Mismatches: 137, Indels: 28
0.82 0.15 0.03
Matches are distributed among these distances:
124 1 0.00
125 104 0.13
126 543 0.70
127 127 0.16
ACGTcount: A:0.39, C:0.18, G:0.29, T:0.15
Consensus pattern (126 bp):
GTCAAAGCCGACAGGCAGACTAAGGGAAGAAAAGTCTCTAGGGTCAAAGCCGATAGGCAGACTAA
GGGAAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAAGGAAAGTCTCCAGG
Found at i:486151 original size:79 final size:78
Alignment explanation
Indices: 486020--486395 Score: 394
Period size: 79 Copynumber: 4.8 Consensus size: 78
486010 AATGGGGCTA
* *
486020 GAGTATCCCCGATTATAGAAAATCGATGTTCTAGAAAA-AAAATCGGGGTTGGAGTATCCTCTCG
1 GAGTATCCCCGATTATAGAAAATCGATGTT-TTGAAAATAAAATCGGGGTTGGAGTATCCCCTCG
*
486084 AAAATAATAGGGTTG
65 AAAATAA-CGGGTTG
* *
486099 GAGTATCCCTGATTATAGAAAATCGACGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTCGA
1 GAGTATCCCCGATTATAGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTCGA
486164 AAATAACGAGGTTG
66 AAATAACG-GGTTG
* * **
486178 GAGTATCCCCGATTGT-GAAAAATTGAT-TCTTT-AGAAAT-AAGGCTGGGGTTGGAGTAT-CCC
1 GAGTATCCCCGATTATAG-AAAATCGATGT-TTTGA-AAATAAAATC-GGGGTTGGAGTATCCCC
* *
486238 TGCCAAAATAATGGGGTTG
62 T-CGAAAATAA-CGGGTTG
* * *
486257 GAGTATCCCCGATTGT-GAGAAATCAATGTTTT-AGAAAT-AAAGCAGGGGTTGGAGTATCCCCT
1 GAGTATCCCCGATTATAGA-AAATCGATGTTTTGA-AAATAAAATC-GGGGTTGGAGTATCCCCT
*
486319 CGAAAATAACGGGATTT
63 CGAAAATAACGGG-TTG
* * *
486336 GAGTATCTCCGATTATGAAAAAAT-GATGTTTTGGAAATAAAATCGGGGTTGGAGTATCCC
1 GAGTATCCCCGATTAT-AGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAGTATCCC
486396 GAGATGAAAA
Statistics
Matches: 255, Mismatches: 26, Indels: 32
0.81 0.08 0.10
Matches are distributed among these distances:
78 21 0.08
79 219 0.86
80 14 0.05
81 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (78 bp):
GAGTATCCCCGATTATAGAAAATCGATGTTTTGAAAATAAAATCGGGGTTGGAGTATCCCCTCGA
AAATAACGGGTTG
Found at i:486308 original size:158 final size:157
Alignment explanation
Indices: 486020--486395 Score: 469
Period size: 158 Copynumber: 2.4 Consensus size: 157
486010 AATGGGGCTA
* * * *
486020 GAGTATCCCCGATTAT-AGAAAATCGATGTTCTAGAAAAAAAATCGGGGTTGGAGTATCCTCTCG
1 GAGTATCCCCGATTATGAAAAAAT-GATGTTTTAGAAATAAAATCGGGGTTGGAGTATCC-CTCC
* * *
486084 AAAATAATAGGGTTGGAGTATCCCTGATTATAGAAAATCGACGTTTTGAAAATAAAATCGGGGTT
64 AAAATAATAGGGTTGGAGTATCCCCGATTATAGAAAATCAACGTTTTGAAAATAAAAGCGGGGTT
486149 GGAGTATCCCCTCGAAAATAACGAGG-TTG
129 GGAGTATCCCCTCGAAAATAACG-GGATTG
* * **
486178 GAGTATCCCCGATTGTGAAAAATTGAT-TCTTTAGAAAT-AAGGCTGGGGTTGGAGTATCCCTGC
1 GAGTATCCCCGATTATGAAAAAATGATGT-TTTAGAAATAAAATC-GGGGTTGGAGTATCCCT-C
* * *
486241 CAAAATAATGGGGTTGGAGTATCCCCGATTGT-GAGAAATCAATGTTTT-AGAAAT-AAAGCAGG
63 CAAAATAATAGGGTTGGAGTATCCCCGATTATAGA-AAATCAACGTTTTGA-AAATAAAAGC-GG
*
486303 GGTTGGAGTATCCCCTCGAAAATAACGGGATTT
125 GGTTGGAGTATCCCCTCGAAAATAACGGGATTG
* *
486336 GAGTATCTCCGATTATGAAAAAATGATGTTTTGGAAATAAAATCGGGGTTGGAGTATCCC
1 GAGTATCCCCGATTATGAAAAAATGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCC
486396 GAGATGAAAA
Statistics
Matches: 187, Mismatches: 21, Indels: 20
0.82 0.09 0.09
Matches are distributed among these distances:
157 15 0.08
158 163 0.87
159 9 0.05
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (157 bp):
GAGTATCCCCGATTATGAAAAAATGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCTCCAA
AATAATAGGGTTGGAGTATCCCCGATTATAGAAAATCAACGTTTTGAAAATAAAAGCGGGGTTGG
AGTATCCCCTCGAAAATAACGGGATTG
Found at i:487958 original size:13 final size:13
Alignment explanation
Indices: 487940--487998 Score: 60
Period size: 13 Copynumber: 5.1 Consensus size: 13
487930 CATTACTGCT
487940 TTGTATCGATACA
1 TTGTATCGATACA
487953 TTGTATCGATACA
1 TTGTATCGATACA
487966 -TG--T---T-CA
1 TTGTATCGATACA
487972 TTGTATCGATACA
1 TTGTATCGATACA
*
487985 TTGTATTGATACA
1 TTGTATCGATACA
487998 T
1 T
487999 GTTCATTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 14
0.72 0.02 0.26
Matches are distributed among these distances:
6 2 0.05
7 3 0.08
9 1 0.03
10 1 0.03
12 3 0.08
13 28 0.74
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:487975 original size:19 final size:19
Alignment explanation
Indices: 487951--488038 Score: 89
Period size: 19 Copynumber: 4.9 Consensus size: 19
487941 TGTATCGATA
487951 CATTGTATCGATACATGTT
1 CATTGTATCGATACATGTT
487970 CATTGTATCGAT--A----
1 CATTGTATCGATACATGTT
*
487983 CATTGTATTGATACATGTT
1 CATTGTATCGATACATGTT
**
488002 CATTGTATCGATACATGGA
1 CATTGTATCGATACATGTT
*
488021 CAATTATATCGATACATG
1 C-ATTGTATCGATACATG
488039 AGATTGGCAG
Statistics
Matches: 57, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
13 11 0.19
15 1 0.02
17 1 0.02
19 29 0.51
20 15 0.26
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.39
Consensus pattern (19 bp):
CATTGTATCGATACATGTT
Found at i:487981 original size:32 final size:32
Alignment explanation
Indices: 487940--488017 Score: 147
Period size: 32 Copynumber: 2.4 Consensus size: 32
487930 CATTACTGCT
487940 TTGTATCGATACATTGTATCGATACATGTTCA
1 TTGTATCGATACATTGTATCGATACATGTTCA
*
487972 TTGTATCGATACATTGTATTGATACATGTTCA
1 TTGTATCGATACATTGTATCGATACATGTTCA
488004 TTGTATCGATACAT
1 TTGTATCGATACAT
488018 GGACAATTAT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 45 1.00
ACGTcount: A:0.28, C:0.14, G:0.15, T:0.42
Consensus pattern (32 bp):
TTGTATCGATACATTGTATCGATACATGTTCA
Found at i:494298 original size:13 final size:13
Alignment explanation
Indices: 494280--494306 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
494270 ACAACATTCC
494280 TTGTATCGATACA
1 TTGTATCGATACA
494293 TTGTATCGATACA
1 TTGTATCGATACA
494306 T
1 T
494307 GGGTTACTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:496827 original size:13 final size:13
Alignment explanation
Indices: 496809--496835 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
496799 ACATTATGCT
496809 TTGTATCGATACA
1 TTGTATCGATACA
496822 TTGTATCGATACA
1 TTGTATCGATACA
496835 T
1 T
496836 GGACAATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:498763 original size:20 final size:19
Alignment explanation
Indices: 498738--498824 Score: 78
Period size: 20 Copynumber: 4.7 Consensus size: 19
498728 AAAATGCCTG
*
498738 AATGTATCGATACATTGAAA
1 AATGTATCGATACAATG-AA
498758 AATGTATCGATAC------
1 AATGTATCGATACAATGAA
*
498771 AATGTATCAATACAATGAA
1 AATGTATCGATACAATGAA
498790 CAATGTATCGATACAATGAA
1 -AATGTATCGATACAATGAA
*
498810 TAATATATCGATACA
1 -AATGTATCGATACA
498825 TCTGGGTAAA
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
13 12 0.21
20 44 0.79
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.29
Consensus pattern (19 bp):
AATGTATCGATACAATGAA
Found at i:498775 original size:33 final size:33
Alignment explanation
Indices: 498738--498807 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
498728 AAAATGCCTG
* *
498738 AATGTATCGATACATTGAAAAATGTATCGATAC
1 AATGTATCAATACAATGAAAAATGTATCGATAC
*
498771 AATGTATCAATACAATGAACAATGTATCGATAC
1 AATGTATCAATACAATGAAAAATGTATCGATAC
498804 AATG
1 AATG
498808 AATAATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (33 bp):
AATGTATCAATACAATGAAAAATGTATCGATAC
Found at i:498807 original size:13 final size:13
Alignment explanation
Indices: 498758--498787 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
498748 TACATTGAAA
*
498758 AATGTATCGATAC
1 AATGTATCAATAC
498771 AATGTATCAATAC
1 AATGTATCAATAC
498784 AATG
1 AATG
498788 AACAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.30
Consensus pattern (13 bp):
AATGTATCAATAC
Found at i:499684 original size:45 final size:44
Alignment explanation
Indices: 499447--499707 Score: 157
Period size: 42 Copynumber: 6.0 Consensus size: 44
499437 GATTAAGGAA
* * * *
499447 AAGGAAAATGAAATGGGTCCTACTCCTTGAGGACAAA-GGAAAA-
1 AAGG-AAATGAAATGTGTCCTGCTCTTTAAGGACAAAGGGAAAAG
* ** * *
499490 AAGGAAATAAAATGCATCATGCCCTTTGAA-GACAAA-GG-AAA-
1 AAGGAAATGAAATGTGTCCTGCTCTTT-AAGGACAAAGGGAAAAG
* * * * *
499531 AAGGAAATTAAA-GTGCACCTTGCTGTTTGAGAACTAGAAGGGAAAAG
1 AAGGAAATGAAATGTG-TCC-TGCTCTTTAAGGAC-A-AAGGGAAAAG
* *
499578 AAGGAAATGAAGTGTGTCCTGCTCTTTAAGGATAAA-GGAAAA-
1 AAGGAAATGAAATGTGTCCTGCTCTTTAAGGACAAAGGGAAAAG
* * ** * *
499620 AAAGAAA--AAAAGCATCCTGCTTTTTTAGGACAAAAGGGAAAAG
1 AAGGAAATGAAATGTGTCCTGCTCTTTAAGGAC-AAAGGGAAAAG
* *
499663 AAGGAAATGAAATGTGTCCTGCTCTTTGAGGGCAAAGGAGAAAAG
1 AAGGAAATGAAATGTGTCCTGCTCTTTAAGGACAAAGG-GAAAAG
499708 GAAAAGCGTC
Statistics
Matches: 163, Mismatches: 39, Indels: 30
0.70 0.17 0.13
Matches are distributed among these distances:
40 18 0.11
41 19 0.12
42 44 0.27
43 18 0.11
44 9 0.06
45 27 0.17
46 13 0.08
47 12 0.07
48 3 0.02
ACGTcount: A:0.43, C:0.12, G:0.25, T:0.20
Consensus pattern (44 bp):
AAGGAAATGAAATGTGTCCTGCTCTTTAAGGACAAAGGGAAAAG
Found at i:499857 original size:123 final size:123
Alignment explanation
Indices: 499702--500349 Score: 867
Period size: 123 Copynumber: 5.3 Consensus size: 123
499692 GGGCAAAGGA
* * * *
499702 GAAAAGGAAAA-GCGTCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
* * * * *
499766 AAGAAAAGACGTCCTACTTTTTGAGGACTA-AAAGGTGCCACCAACTCGTGTAGGCTTT
65 AAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * ** *
499824 GAAAAGAAAAAGGCATCCTGCACTTTGAGGACTAAGCGGTGCCACCAACTTGCGTGGGCTTTGAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
* * *
499889 AAGAAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTATGGGCTTC
65 AAG-AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * ** *
499949 G-AAAGAAAAAGACGTCCTGCTCTTTAAGGACTAAAAGGTGCCACCAGCTCATGTAGGCTTTAAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAA
* ** *
500013 AGGAAAAGGCATCCTGCTCTTTGAGGACTA-AGGGGTGCCACCAACTTGTGCGGGCTTT
66 A-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
*
500071 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCATCAACTTGTGTGGGCTTTAAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AA
* *
500136 AAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGCGCCACCAACTTGTGTGGGCTTT
65 AAGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
500195 -AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTAGAAGGTACCACCAACTTGTGTGGGCTTTAAA
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAA
* *
500259 AGGAAAAGGCATCCTGCTCTTTGAGGACTACAAA-GTGCCACCAACTTGTGTGGGCTTT
66 A-GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
*
500317 AAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT
500350 GAAGGTGAAA
Statistics
Matches: 459, Mismatches: 58, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
122 61 0.13
123 273 0.59
124 100 0.22
125 25 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (123 bp):
GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTAAA
AGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:499866 original size:62 final size:62
Alignment explanation
Indices: 499702--500349 Score: 862
Period size: 62 Copynumber: 10.5 Consensus size: 62
499692 GGGCAAAGGA
* * * *
499702 GAAAAGGAAAA-GCGTCCTGCTCTTTGGGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * * * *
499763 GAAAAG-AAAAGACGTCCTACTTTTTGAGGACTAAAAGGTGCCACCAACTCGTGTAGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * ** *
499824 GAAAAGAAAAAGGCATCCTGCACTTTGAGGACTAAGCGGTGCCACCAACTTGCGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
499886 GAAAAGAAAAAGGTGTCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTATGGGCTTC
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * ** *
499949 G-AAAGAAAAAGACGTCCTGCTCTTTAAGGACTAAAAGGTGCCACCAGCTCATGTAGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * ** *
500010 -AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAAGGGGTGCCACCAACTTGTGCGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
*
500071 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCATCAACTTGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* * *
500133 AAAAAG-AAAAGGCGTCCTGCTCTTTGAGGACTAGAAAAGCGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
* * * *
500195 -AAAAGGAAAAGGCGTCCTACTCTTTGAGGACTAGAAGGTACCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
* *
500256 -AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTACAAA-GTGCCACCAACTTGTGTGGGCTTT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
*
500317 AAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT
1 GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACT
500350 GAAGGTGAAA
Statistics
Matches: 513, Mismatches: 65, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
60 4 0.01
61 237 0.46
62 248 0.48
63 24 0.05
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.23
Consensus pattern (62 bp):
GAAAAGAAAAAGGCGTCCTGCTCTTTGAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT
Found at i:501371 original size:14 final size:15
Alignment explanation
Indices: 501344--501377 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
501334 TTCTTTCTTT
*
501344 TTTTTCTTTGTTTTG
1 TTTTTATTTGTTTTG
501359 TTTTTATTT-TTTTG
1 TTTTTATTTGTTTTG
501373 TTTTT
1 TTTTT
501378 TTTAGAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (15 bp):
TTTTTATTTGTTTTG
Found at i:501372 original size:19 final size:17
Alignment explanation
Indices: 501327--501380 Score: 56
Period size: 18 Copynumber: 3.0 Consensus size: 17
501317 AAGCAGGTTC
501327 TTTTCTTT-TCTTTCTTTT
1 TTTTCTTTGT-TTT-TTTT
501345 TTTTCTTTGTTTTGTTTT
1 TTTTCTTTGTTTT-TTTT
*
501363 TATTTTTTTGTTTTTTTT
1 T-TTTCTTTGTTTTTTTT
501381 AGAAAAAGGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 20 0.62
19 12 0.38
ACGTcount: A:0.02, C:0.07, G:0.06, T:0.85
Consensus pattern (17 bp):
TTTTCTTTGTTTTTTTT
Found at i:513894 original size:28 final size:30
Alignment explanation
Indices: 513842--513897 Score: 80
Period size: 28 Copynumber: 1.9 Consensus size: 30
513832 TCGACGTTTT
* *
513842 GAAAATAAATCGGGGTTTGAGTATCCCCTC
1 GAAAATAAATCGGGGTTGGAATATCCCCTC
513872 GAAAAT-AA-CGGGGTTGGAATATCCCC
1 GAAAATAAATCGGGGTTGGAATATCCCC
513898 GATTGTGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 16 0.67
29 2 0.08
30 6 0.25
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (30 bp):
GAAAATAAATCGGGGTTGGAATATCCCCTC
Found at i:513895 original size:78 final size:76
Alignment explanation
Indices: 513721--514103 Score: 356
Period size: 79 Copynumber: 4.9 Consensus size: 76
513711 TGGGGATAAC
* * **
513721 AACGGGGCTGGAGTATCCCCGATTATGGAAAATCGATGTTCTAGAAATAAAATCGGATTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAATCGATGTTTTAGAAAT-AAATCGGGGTTGGAGT
513786 ATCCCCTCAGAAAT
64 ATCCCCTCA-AAAT
* * * * *
513800 AACAGGATTGGAGTATCCCTGATTATAGAAAATCGACGTTTT-GAAAATAAATCGGGGTTTGAGT
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAATCGATGTTTTAG-AAATAAATCGGGGTTGGAGT
513864 ATCCCCTCGAAAAT
64 ATCCCCTC-AAAAT
* * **
513878 AACGGGGTTGGAATATCCCCGATTGTGAAAAATCGAT-TCTTTAGAAATAAGGCTGGGGTTGGAG
1 AACGGGGTTGGAGTATCCCCGATTATG-AAAATCGATGT-TTTAGAAATAAATC-GGGGTTGGAG
*
513942 TATCCCCACCAAAAT
63 TATCCCC-TCAAAAT
* * * * *
513957 AACGGTGTTGGAGTATCCTCGATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGA-AAATCGATGTTTTAGAAATAAA-TCGGGGTTGGAGT
*
514022 ATCCCTTCAAAAAT
64 ATCCCCTC-AAAAT
* * * * * ** * *
514036 AACGAGATTAGAGTATCTCCAATTATGAAAAATTAATGTTTTGGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATG-AAAATCGATGTTTTAGAAAT-AAATCGGGGTTGGAGT
514101 ATC
64 ATC
514104 TCTGAGATGA
Statistics
Matches: 252, Mismatches: 39, Indels: 26
0.79 0.12 0.08
Matches are distributed among these distances:
77 2 0.01
78 67 0.27
79 176 0.70
80 7 0.03
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (76 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAATCGATGTTTTAGAAATAAATCGGGGTTGGAGTAT
CCCCTCAAAAT
Found at i:514007 original size:157 final size:158
Alignment explanation
Indices: 513721--514103 Score: 368
Period size: 157 Copynumber: 2.4 Consensus size: 158
513711 TGGGGATAAC
* * *
513721 AACGGGGCTGGAGTATCCCCGATTATGGAAAATCGATGTTCTAGAAATAAAATCGGATTTGGAGT
1 AACGGGGCTGGAATATCCCCGATTATGAAAAATCGATGTTCTAGAAATAAAATCGGAGTTGGAGT
* * *
513786 ATCCCCTCAGAAATAACAGGATTGGAGTATCCCTGATTATAGAAAATCGACGTTTTGAAAATAAA
66 ATCCCCCCAGAAATAACAGGATTGGAGTATCCCTGATTATAGAAAATCAACATTTTGAAAATAAA
* * *
513851 -TCGGGGTTTGAGTATCCCCTCGAAAAT
131 GCCGGGGTTGGAGTATCCCCTCAAAAAT
* * * ** *
513878 AACGGGGTTGGAATATCCCCGATTGTGAAAAATCGAT-TCTTTAGAAAT-AAGGCTGGGGTTGGA
1 AACGGGGCTGGAATATCCCCGATTATGAAAAATCGATGT-TCTAGAAATAAAATC-GGAGTTGGA
* *
513941 GTATCCCCACCA-AAATAAC-GGTGTTGGAGTAT-CCTCGATTAT-GAGAAATCAATATTTT-AG
64 GTATCCCC-CCAGAAATAACAGG-ATTGGAGTATCCCT-GATTATAGA-AAATCAACATTTTGA-
*
514001 AAATAAAGCCGGGGTTGGAGTATCCCTTCAAAAAT
124 AAATAAAGCCGGGGTTGGAGTATCCCCTCAAAAAT
* ** * * * * ** * * * *
514036 AACGAGATTAGAGTATCTCCAATTATGAAAAATTAATGTTTTGGAAATAAAACCGGGGTTGGAGT
1 AACGGGGCTGGAATATCCCCGATTATGAAAAATCGATGTTCTAGAAATAAAATCGGAGTTGGAGT
514101 ATC
66 ATC
514104 TCTGAGATGA
Statistics
Matches: 186, Mismatches: 30, Indels: 19
0.79 0.13 0.08
Matches are distributed among these distances:
156 12 0.06
157 95 0.51
158 75 0.40
159 4 0.02
ACGTcount: A:0.34, C:0.15, G:0.23, T:0.27
Consensus pattern (158 bp):
AACGGGGCTGGAATATCCCCGATTATGAAAAATCGATGTTCTAGAAATAAAATCGGAGTTGGAGT
ATCCCCCCAGAAATAACAGGATTGGAGTATCCCTGATTATAGAAAATCAACATTTTGAAAATAAA
GCCGGGGTTGGAGTATCCCCTCAAAAAT
Found at i:520410 original size:52 final size:52
Alignment explanation
Indices: 520325--520449 Score: 187
Period size: 52 Copynumber: 2.4 Consensus size: 52
520315 ATATGAAAAT
* *
520325 TTGCTTGCATGTATCAATACATTTCATAATGTATCGATACATCTAGGCAAAG
1 TTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGCAAAG
* * * * *
520377 TTGCCTGCATGTATTGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGCAAAG
520429 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
520450 AAGATCAGTG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTCATAATGTATCGATACATCTAGGCAAAG
Found at i:520460 original size:52 final size:52
Alignment explanation
Indices: 520325--520469 Score: 166
Period size: 52 Copynumber: 2.8 Consensus size: 52
520315 ATATGAAAAT
* * *** *
520325 TTGCTTGCATGTATCAATACATTTCATAATGTATCGATACATCTAGGCAAAG
1 TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAAG
* *** * *
520377 TTGCCTGCATGTATTGATACATTTTATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAAG
520429 TTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTGCCTGCATGTATCGATACATAAGAT-AGTGTATCGATACA
520470 ATGTATCGAT
Statistics
Matches: 81, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
51 2 0.02
52 79 0.98
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.34
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATAAGATAGTGTATCGATACATCTAGGCAAAG
Found at i:520476 original size:13 final size:13
Alignment explanation
Indices: 520458--520482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
520448 CAAAGATCAG
520458 TGTATCGATACAA
1 TGTATCGATACAA
520471 TGTATCGATACA
1 TGTATCGATACA
520483 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:520543 original size:13 final size:13
Alignment explanation
Indices: 520521--520642 Score: 55
Period size: 13 Copynumber: 8.0 Consensus size: 13
520511 AGCAGTAGCT
*
520521 TTGTAGCGATACA
1 TTGTATCGATACA
520534 TTGTATCGATACAAAA
1 TTGTATCGATAC---A
520550 CTTATGTATCGATACA
1 --T-TGTATCGATACA
520566 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
*
520582 CTTATGTATCTATACA
1 --T-TGTATCGATACA
520598 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
*
520614 CTTATGTATCGATATA
1 --T-TGTATCGATACA
520630 TTGTATCGATACA
1 TTGTATCGATACA
520643 ACACTTTATG
Statistics
Matches: 86, Mismatches: 5, Indels: 36
0.68 0.04 0.28
Matches are distributed among these distances:
13 39 0.45
14 3 0.03
16 13 0.15
18 3 0.03
19 28 0.33
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:520559 original size:19 final size:19
Alignment explanation
Indices: 520535--520663 Score: 96
Period size: 19 Copynumber: 7.7 Consensus size: 19
520525 AGCGATACAT
*
520535 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
520554 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
520567 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
520586 TGTATC--TA-TACA--T-
1 TGTATCGATACAACACTTA
520599 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
520618 TGTATCGAT---ATA--T-
1 TGTATCGATACAACACTTA
520631 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
520651 TGTATCGATACAA
1 TGTATCGATACAA
520664 ATCGTTGAAA
Statistics
Matches: 86, Mismatches: 5, Indels: 37
0.67 0.04 0.29
Matches are distributed among these distances:
13 24 0.28
14 3 0.03
15 2 0.02
16 15 0.17
17 2 0.02
18 2 0.02
19 25 0.29
20 13 0.15
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:520568 original size:32 final size:32
Alignment explanation
Indices: 520522--520662 Score: 237
Period size: 32 Copynumber: 4.4 Consensus size: 32
520512 GCAGTAGCTT
* *
520522 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
520554 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
*
520586 TGTATCTATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
*
520618 TGTATCGATATATTGTATCGATACAACACTTTA
1 TGTATCGATACATTGTATCGATACAACAC-TTA
520651 TGTATCGATACA
1 TGTATCGATACA
520663 AATCGTTGAA
Statistics
Matches: 102, Mismatches: 6, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
32 88 0.86
33 14 0.14
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:529466 original size:47 final size:47
Alignment explanation
Indices: 529413--529595 Score: 258
Period size: 47 Copynumber: 3.9 Consensus size: 47
529403 GGAATTGTTA
* *
529413 CCGGTTGTTCATGGAAGCTGCTGCTACCGTGGAAGCTGGAGTTGCTG
1 CCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGCTGGAGTTGCTG
* *
529460 CCGGTTGCTCGTGGAAGCTACTGCTACTGTGGAAGCTGGAGTTGCTG
1 CCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGCTGGAGTTGCTG
* * **
529507 CCGATTGCTTGTGGAAGCTGCTGCTGTCGTGGAAGCTGGAGTTGCTG
1 CCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGCTGGAGTTGCTG
* * *
529554 CCGGTTGCTCGTGGAAGCTGCTAACTGCCATGGAAGCTGGAG
1 CCGGTTGCTCGTGGAAGCTGCT-GCTACCGTGGAAGCTGGAG
529596 GAGGCTCGAG
Statistics
Matches: 120, Mismatches: 15, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 104 0.87
48 16 0.13
ACGTcount: A:0.15, C:0.21, G:0.37, T:0.27
Consensus pattern (47 bp):
CCGGTTGCTCGTGGAAGCTGCTGCTACCGTGGAAGCTGGAGTTGCTG
Found at i:530313 original size:31 final size:31
Alignment explanation
Indices: 530275--530335 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
530265 TCCATTTACT
530275 TGTGTCCCCCATGATTGCATGCTACATTGCA
1 TGTGTCCCCCATGATTGCATGCTACATTGCA
* *
530306 TGTGTCCCCTATGATTGCATGCTATATTGC
1 TGTGTCCCCCATGATTGCATGCTACATTGC
530336 CTTGCATGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.18, C:0.26, G:0.20, T:0.36
Consensus pattern (31 bp):
TGTGTCCCCCATGATTGCATGCTACATTGCA
Found at i:533930 original size:52 final size:52
Alignment explanation
Indices: 533862--533980 Score: 211
Period size: 52 Copynumber: 2.3 Consensus size: 52
533852 AAATTTATCT
*
533862 GCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCG
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCG
* *
533914 GCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCT
1 GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCG
533966 GCATGTATCGATACA
1 GCATGTATCGATACA
533981 AAGATCAGTG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 64 1.00
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (52 bp):
GCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCG
Found at i:533993 original size:52 final size:51
Alignment explanation
Indices: 533860--534000 Score: 203
Period size: 52 Copynumber: 2.7 Consensus size: 51
533850 GAAAATTTAT
533860 CTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
* * *
533912 CGGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGC
1 CTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGCAAATTTGC
*
533964 CTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 CTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
534001 ATGTATCGAT
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.03
52 78 0.98
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33
Consensus pattern (51 bp):
CTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGCAAATTTGC
Found at i:534007 original size:13 final size:13
Alignment explanation
Indices: 533989--534013 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
533979 CAAAGATCAG
533989 TGTATCGATACAA
1 TGTATCGATACAA
534002 TGTATCGATACA
1 TGTATCGATACA
534014 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:534097 original size:13 final size:13
Alignment explanation
Indices: 534079--534103 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
534069 CAAAAAAATA
534079 TGTATCGATACAT
1 TGTATCGATACAT
534092 TGTATCGATACA
1 TGTATCGATACA
534104 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:534099 original size:33 final size:33
Alignment explanation
Indices: 534057--534123 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
534047 AGTAGCTTAA
534057 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
534090 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
534123 A
1 A
534124 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:536396 original size:50 final size:50
Alignment explanation
Indices: 536342--536438 Score: 158
Period size: 50 Copynumber: 1.9 Consensus size: 50
536332 ATCAATATAT
* * *
536342 TTTCTTTCCAGAATGCAAAATTTTGCTTGCATGGTCCTGTATCGATACAC
1 TTTCTTTCCAGAATGCAAAATTTTACCTACATGGTCCTGTATCGATACAC
*
536392 TTTCTTTCCAGAATGCAAAATTTTACCTATATGGTCCTGTATCGATA
1 TTTCTTTCCAGAATGCAAAATTTTACCTACATGGTCCTGTATCGATA
536439 TAATTCAAGC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (50 bp):
TTTCTTTCCAGAATGCAAAATTTTACCTACATGGTCCTGTATCGATACAC
Found at i:536496 original size:21 final size:20
Alignment explanation
Indices: 536449--536502 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
536439 TAATTCAAGC
*
536449 ATGTATTAATACATTCACTT
1 ATGTATCAATACATTCACTT
*
536469 ATGTATCGATACATT-ACCTT
1 ATGTATCAATACATTCA-CTT
536489 ATTGTATCAATACA
1 A-TGTATCAATACA
536503 AATTGCTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 1 0.03
20 17 0.59
21 11 0.38
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTCACTT
Found at i:541123 original size:19 final size:18
Alignment explanation
Indices: 541087--541122 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
541077 TTTGCTTTAA
541087 TTTTTCTTTTTTTCTCTC
1 TTTTTCTTTTTTTCTCTC
541105 TTTTTCTTTTTTT-TCTC
1 TTTTTCTTTTTTTCTCTC
541122 T
1 T
541123 CCTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (18 bp):
TTTTTCTTTTTTTCTCTC
Found at i:541896 original size:167 final size:166
Alignment explanation
Indices: 541653--542126 Score: 496
Period size: 168 Copynumber: 2.8 Consensus size: 166
541643 TAAATTAAAA
* * * * * * *
541653 TTTTCAAAACTGATTTAATAGGAGTTTAATGATAATATTAGATGAATTCTAAAAATTTTAAACCA
1 TTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTAT-AACCA
* * * *
541718 AAG-ACAATCCCCTC-AAAAATATTTA-TGGGATAGAAAATTCGGTTTTTTGAAAATATAAGCAT
65 AAGAAAAATCCCCTCTAAAAATATTTACAGAG-TAGAAAATTC-GTATTTTGAAAATATAAG-AT
* * *
541780 GTT-AAGGAAAAAAATG-AAAAA-TTCATGAAAATAAATGAGT
127 -TTCAAAG-AAAAAATGAAAAAACTT-ACGAAAATAAATGAAT
* * * * *
541820 TTTTCAAAACTAAATTACTATGAATTAAATGATGATATTTGATGAATTTTAGAAATTATAACCGA
1 TTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAACCAA
* * * * *
541885 AGAAAAATCCCC-CTTAAAATATTTACAGAGTAGAAAACTCCGTATTTCGAAAACAATGAGATTT
66 AGAAAAATCCCCTCTAAAAATATTTACAGAGTAGAAAA-TTCGTATTTTGAAAA-TATAAGATTT
541949 CAAAGAAAAAATGAAAAAAACTTACGAAAATAAATGAAT
129 CAAAGAAAAAATG-AAAAAACTTACGAAAATAAATGAAT
* * * * *
541988 TTTTCAAAACTGATTTATTATGAATCAAATAATGATATTTGATGAATTTTAAAAATTATAAACTA
1 TTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAACCAA
* * *
542053 CGAAAAAT-CCCTCTGAAAACATTTACAGAGTAGAAAATTTCGTATTTTGAAAATATAAGAATTT
66 AGAAAAATCCCCTCTAAAAATATTTACAGAGTAGAAAA-TTCGTATTTTGAAAATATAAG-ATTT
542117 CAAAGAAAAA
129 CAAAGAAAAA
542127 TTAATGAAAT
Statistics
Matches: 256, Mismatches: 40, Indels: 21
0.81 0.13 0.07
Matches are distributed among these distances:
166 18 0.07
167 95 0.37
168 141 0.55
169 2 0.01
ACGTcount: A:0.47, C:0.10, G:0.12, T:0.31
Consensus pattern (166 bp):
TTTTCAAAACTGATTTAATATGAATTAAATGATGATATTTGATGAATTTTAAAAATTATAACCAA
AGAAAAATCCCCTCTAAAAATATTTACAGAGTAGAAAATTCGTATTTTGAAAATATAAGATTTCA
AAGAAAAAATGAAAAAACTTACGAAAATAAATGAAT
Found at i:544382 original size:19 final size:20
Alignment explanation
Indices: 544348--544401 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
544338 GAGAAATAGT
*
544348 AAAGATAATGGAAAG-AAAAC
1 AAAGA-AATTGAAAGAAAAAC
* *
544368 AAAGAAGTTGAAAGAAAAAT
1 AAAGAAATTGAAAGAAAAAC
544388 AAAGAAATTGAAAG
1 AAAGAAATTGAAAG
544402 GCAAAACTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 7 0.24
20 22 0.76
ACGTcount: A:0.65, C:0.02, G:0.20, T:0.13
Consensus pattern (20 bp):
AAAGAAATTGAAAGAAAAAC
Found at i:545362 original size:20 final size:21
Alignment explanation
Indices: 545337--545375 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
545327 TCCCGTGTGA
545337 ATGTATCGATACA-ATTTTTG
1 ATGTATCGATACATATTTTTG
545357 ATGTATCGATACATATTTT
1 ATGTATCGATACATATTTT
545376 AAAATATAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (21 bp):
ATGTATCGATACATATTTTTG
Found at i:545434 original size:20 final size:20
Alignment explanation
Indices: 545409--545460 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
545399 TACAAGCCAA
**
545409 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATACTTTG
545429 TGTATCGATAC-ATACTTTG
1 TGTATCGATACAATACTTTG
545448 TGTATCGATACAA
1 TGTATCGATACAA
545461 GTTTGGCTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.42
Consensus pattern (20 bp):
TGTATCGATACAATACTTTG
Found at i:546178 original size:42 final size:42
Alignment explanation
Indices: 546094--546189 Score: 102
Period size: 42 Copynumber: 2.3 Consensus size: 42
546084 TATTCAAAAG
** * *** *
546094 GAACCAACTGAGTAGTGCTCTAACTAAGGTGTTTCTTATGCT
1 GAACCAACTGAACAGTGCTCTAAATAAGGCAATTCCTATGCT
*
546136 GAACCAACTGAACAGTGCTCTAAATAAGGCAATTCCTGTGCT
1 GAACCAACTGAACAGTGCTCTAAATAAGGCAATTCCTATGCT
* *
546178 GAAACAAATGAA
1 GAACCAACTGAA
546190 AAACCATCGG
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (42 bp):
GAACCAACTGAACAGTGCTCTAAATAAGGCAATTCCTATGCT
Found at i:546630 original size:28 final size:28
Alignment explanation
Indices: 546599--546659 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
546589 GATTTATATG
*
546599 AAAAACTTTATATATAATATTGATAGAT
1 AAAAACTTGATATATAATATTGATAGAT
*
546627 AAAAACTTGATATATAGTATTGATAGAT
1 AAAAACTTGATATATAATATTGATAGAT
546655 AAAAA
1 AAAAA
546660 TCCATACATT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.34
Consensus pattern (28 bp):
AAAAACTTGATATATAATATTGATAGAT
Found at i:550385 original size:94 final size:94
Alignment explanation
Indices: 550238--550459 Score: 301
Period size: 94 Copynumber: 2.4 Consensus size: 94
550228 ATTTAACTGG
* *
550238 ATGTATCGATACATTCTA---ATGTATGAATAC-ATTTAGGTCAAAAACCTAAAATGTATCAGTA
1 ATGTATCGATACA-TCTATTTATGTATCAATGCAATTTAGGTCAAAAACCTAAAATGTATCAGTA
**
550299 CAATAAAAAATGTATCGATATATTACCAGC
65 CAATAAAAAAAATATCGATATATTACCAGC
* *
550329 ATGTATCGATACATCTATTTATGTATCAATGCAATTTAGGT-AAGAAACCTAGAATGTATCGGTA
1 ATGTATCGATACATCTATTTATGTATCAATGCAATTTAGGTCAA-AAACCTAAAATGTATCAGTA
*
550393 CAATAAAAAAAATATCGATATATTACCAGT
65 CAATAAAAAAAATATCGATATATTACCAGC
* * *
550423 ATGTATCGATATATCCATTTACGTATCAATGCAATTT
1 ATGTATCGATACATCTATTTATGTATCAATGCAATTT
550460 TTTTCAGAAT
Statistics
Matches: 116, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
90 4 0.03
91 13 0.11
93 12 0.10
94 87 0.75
ACGTcount: A:0.41, C:0.14, G:0.13, T:0.33
Consensus pattern (94 bp):
ATGTATCGATACATCTATTTATGTATCAATGCAATTTAGGTCAAAAACCTAAAATGTATCAGTAC
AATAAAAAAAATATCGATATATTACCAGC
Found at i:555334 original size:18 final size:18
Alignment explanation
Indices: 555311--555346 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
555301 GGTGTGATCC
*
555311 CCTTGACTTTGTTTGTAT
1 CCTTGACTTTGTTAGTAT
555329 CCTTGACTTTGTTAGTAT
1 CCTTGACTTTGTTAGTAT
555347 GAATCAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.53
Consensus pattern (18 bp):
CCTTGACTTTGTTAGTAT
Found at i:563803 original size:91 final size:91
Alignment explanation
Indices: 563648--563830 Score: 357
Period size: 91 Copynumber: 2.0 Consensus size: 91
563638 GGACTTCGCC
*
563648 AATCTTTTTGCTAAGTTGAGGAAGGCTGGACAGTAGCTAGCTTTATAATGAATGTAATTAAGTTG
1 AATCTTTTTGCTAAGTTGAGAAAGGCTGGACAGTAGCTAGCTTTATAATGAATGTAATTAAGTTG
563713 CCCTTTCCTGTACTGATGAGTGGGCA
66 CCCTTTCCTGTACTGATGAGTGGGCA
563739 AATCTTTTTGCTAAGTTGAGAAAGGCTGGACAGTAGCTAGCTTTATAATGAATGTAATTAAGTTG
1 AATCTTTTTGCTAAGTTGAGAAAGGCTGGACAGTAGCTAGCTTTATAATGAATGTAATTAAGTTG
563804 CCCTTTCCTGTACTGATGAGTGGGCA
66 CCCTTTCCTGTACTGATGAGTGGGCA
563830 A
1 A
563831 TGTTCCTTGT
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 91 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.34
Consensus pattern (91 bp):
AATCTTTTTGCTAAGTTGAGAAAGGCTGGACAGTAGCTAGCTTTATAATGAATGTAATTAAGTTG
CCCTTTCCTGTACTGATGAGTGGGCA
Found at i:572712 original size:2 final size:2
Alignment explanation
Indices: 572705--572745 Score: 64
Period size: 2 Copynumber: 20.5 Consensus size: 2
572695 TAGGGTTCTT
* *
572705 TA TA TA TA TA TA TA TG TA TA TA TA TA TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
572746 TATTCTCCTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:574004 original size:12 final size:12
Alignment explanation
Indices: 573987--574022 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
573977 CCTCATCACT
573987 CACATCAAGCAC
1 CACATCAAGCAC
573999 CACATC-A-CA-
1 CACATCAAGCAC
574008 CACATCAAGCAC
1 CACATCAAGCAC
574020 CAC
1 CAC
574023 GTCAGTTTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
9 6 0.29
10 3 0.14
11 3 0.14
12 9 0.43
ACGTcount: A:0.42, C:0.44, G:0.06, T:0.08
Consensus pattern (12 bp):
CACATCAAGCAC
Found at i:574006 original size:21 final size:21
Alignment explanation
Indices: 573980--574022 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
573970 GTCACAACCT
*
573980 CATCACTCACATCAAGCACCA
1 CATCACACACATCAAGCACCA
574001 CATCACACACATCAAGCACCA
1 CATCACACACATCAAGCACCA
574022 C
1 C
574023 GTCAGTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.40, C:0.44, G:0.05, T:0.12
Consensus pattern (21 bp):
CATCACACACATCAAGCACCA
Found at i:575097 original size:30 final size:30
Alignment explanation
Indices: 575063--575126 Score: 101
Period size: 30 Copynumber: 2.1 Consensus size: 30
575053 GCCTCTACTA
*
575063 GTGGTGGCTTTGCTGGTTTGGCTTCAGGTG
1 GTGGTGGCTTTGCTGGTGTGGCTTCAGGTG
* *
575093 GTGGTGGGTTTTCTGGTGTGGCTTCAGGTG
1 GTGGTGGCTTTGCTGGTGTGGCTTCAGGTG
575123 GTGG
1 GTGG
575127 ATTTGGTGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.03, C:0.11, G:0.47, T:0.39
Consensus pattern (30 bp):
GTGGTGGCTTTGCTGGTGTGGCTTCAGGTG
Found at i:575122 original size:27 final size:28
Alignment explanation
Indices: 575063--575142 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 28
575053 GCCTCTACTA
*
575063 GTGGTGGCTTTGCTGGTTTGGCTTCAGGTG
1 GTGGTGGCTTTGCTGGTGTGGCTTCA-G-G
* *
575093 GTGGTGGGTTTTCTGGTGTGGCTTCA-G
1 GTGGTGGCTTTGCTGGTGTGGCTTCAGG
* * *
575120 GTGGTGGATTTGGTGGTCTGGCT
1 GTGGTGGCTTTGCTGGTGTGGCT
575143 ACAAATGGTG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 20 0.47
30 23 0.53
ACGTcount: A:0.04, C:0.11, G:0.45, T:0.40
Consensus pattern (28 bp):
GTGGTGGCTTTGCTGGTGTGGCTTCAGG
Found at i:575142 original size:57 final size:57
Alignment explanation
Indices: 575063--575183 Score: 136
Period size: 57 Copynumber: 2.1 Consensus size: 57
575053 GCCTCTACTA
* * * ** * **
575063 GTGGTGGCTTTGCTGGTTTGGCTTCAGGTGGTGGTGGG-TTTTCTGGTGTGGCTTCAG
1 GTGGTGGATTTGCTGGTCTGGCTACAAATGGTGG-GGGATTTGCTGGCCTGGCTTCAG
* *
575120 GTGGTGGATTTGGTGGTCTGGCTACAAATGGTGGGGGATTTGGTGGCCTGGCTTCAG
1 GTGGTGGATTTGCTGGTCTGGCTACAAATGGTGGGGGATTTGCTGGCCTGGCTTCAG
575177 GTGGTGG
1 GTGGTGG
575184 GGGATTTGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
56 3 0.06
57 50 0.94
ACGTcount: A:0.07, C:0.12, G:0.45, T:0.36
Consensus pattern (57 bp):
GTGGTGGATTTGCTGGTCTGGCTACAAATGGTGGGGGATTTGCTGGCCTGGCTTCAG
Found at i:575153 original size:30 final size:30
Alignment explanation
Indices: 575119--575196 Score: 111
Period size: 30 Copynumber: 2.6 Consensus size: 30
575109 TGTGGCTTCA
*
575119 GGTGGTGGATTTGGTGGTCTGGCTACAAAT
1 GGTGGGGGATTTGGTGGTCTGGCTACAAAT
* * **
575149 GGTGGGGGATTTGGTGGCCTGGCTTCAGGT
1 GGTGGGGGATTTGGTGGTCTGGCTACAAAT
575179 GGTGGGGGATTTGGTGGT
1 GGTGGGGGATTTGGTGGT
575197 TTAGCTAGCG
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.10, C:0.09, G:0.49, T:0.32
Consensus pattern (30 bp):
GGTGGGGGATTTGGTGGTCTGGCTACAAAT
Found at i:576016 original size:4 final size:4
Alignment explanation
Indices: 575995--576034 Score: 62
Period size: 4 Copynumber: 10.0 Consensus size: 4
575985 TAATCGGACG
* *
575995 GTAT CTAT GTAT GCAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT GTAT
576035 ATCCCCAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.25, C:0.05, G:0.23, T:0.47
Consensus pattern (4 bp):
GTAT
Found at i:576588 original size:44 final size:44
Alignment explanation
Indices: 576523--576607 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
576513 AAAATTTAAA
*
576523 ATTTTATATTCAATCTCAAATTACTATTTAAAAAAATAAAATAT
1 ATTTTATATTAAATCTCAAATTACTATTTAAAAAAATAAAATAT
* * * *
576567 ATTTTATATTAAATTTTAAATTATTATTTAAAAATATAAAA
1 ATTTTATATTAAATCTCAAATTACTATTTAAAAAAATAAAA
576608 ATTAAAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 36 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.45
Consensus pattern (44 bp):
ATTTTATATTAAATCTCAAATTACTATTTAAAAAAATAAAATAT
Found at i:576619 original size:44 final size:44
Alignment explanation
Indices: 576478--576619 Score: 124
Period size: 44 Copynumber: 3.1 Consensus size: 44
576468 GAAATGACAT
*
576478 TATTAAATTTTGAATTATTATTTAAAAAATTAATAAAAATTTAAAATTTTA
1 TATTAAATTTTAAATTATTATTT-AAAAA-T-ATAAAAA-TTAAAA---TA
* * * * * ***
576529 TATTCAATCTCAAATTACTATTTAAAAAAAT-AAAATATATTTTA
1 TATTAAATTTTAAATTATTATTTAAAAATATAAAAAT-TAAAATA
576573 TATTAAATTTTAAATTATTATTTAAAAATATAAAAATTAAAATA
1 TATTAAATTTTAAATTATTATTTAAAAATATAAAAATTAAAATA
576617 TAT
1 TAT
576620 ATTTTATTTT
Statistics
Matches: 72, Mismatches: 17, Indels: 11
0.72 0.17 0.11
Matches are distributed among these distances:
44 35 0.49
45 5 0.07
46 1 0.01
47 6 0.08
48 2 0.03
50 5 0.07
51 18 0.25
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (44 bp):
TATTAAATTTTAAATTATTATTTAAAAATATAAAAATTAAAATA
Done.