Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold438
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1141244
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
File 4 of 7
Found at i:576727 original size:105 final size:102
Alignment explanation
Indices: 576478--576935 Score: 422
Period size: 105 Copynumber: 4.5 Consensus size: 102
576468 GAAATGACAT
* * * *
576478 TATTAAATTTTGAATTATTATTTAAAAAATTAATAAAAATT--TAAA-ATTTTATATTCAATCTC
1 TATTAAATTTTAAATTACTATTTAAAAAA-TAATAAAAATTAAAAAATATTTTATATTAAATCTC
* *
576540 -AAATTACTATTT-----A-AAAAAATAAAATATATTTTA
65 TAATTTA-T-TTTAAAAAATAAAAAATAAAAAATATTTTA
* *
576573 TATTAAATTTTAAATTATTATTT-AAAAAT-ATAAAAATTAAAATATATATTTTATTTTAAATCT
1 TATTAAATTTTAAATTACTATTTAAAAAATAATAAAAATTAAAA-A-ATATTTTATATTAAATCT
576636 CT-ATTTACTTTTAAAAAATAAGAAAATAAAATATATATTTTA
64 CTAATTTA-TTTTAAAAAATAA-AAAATAAAA-A-ATATTTTA
* *
576678 TATTTTAAATCTTGAATTACT-TTTAAAAAATAATAAAAATT-AAAAATATTTTATATTAAATCT
1 TA--TTAAATTTTAAATTACTATTTAAAAAATAATAAAAATTAAAAAATATTTTATATTAAATCT
* * *
576741 -TAAATTATTTTGAAAAAT----ATTAAAAAATATTTTA
64 CTAATTTATTTTAAAAAATAAAAAATAAAAAATATTTTA
* * *
576775 TAATAAATTTTGAGTTACTATTTAAAAAATAATAAAATATTAAAAAATATTTTATATTAAATC-C
1 TATTAAATTTTAAATTACTATTTAAAAAATAATAAAA-ATTAAAAAATATTTTATATTAAATCTC
* *
576839 TAATTTATAATTAAAAAATAATAAAA-ATAAAATATTTTA
65 TAATTTAT-TTTAAAAAATAA-AAAATAAAAAATATTTTA
* *
576878 TATTAAATTCTAAATTACTATTTGAATAAAATAATAAAAAATT-TAAAATATTTTATAT
1 TATTAAATTTTAAATTACTATTT-AA-AAAATAAT-AAAAATTAAAAAATATTTTATAT
576936 ATGTATTGGG
Statistics
Matches: 304, Mismatches: 26, Indels: 57
0.79 0.07 0.15
Matches are distributed among these distances:
92 9 0.03
93 1 0.00
94 6 0.02
95 37 0.12
96 21 0.07
97 34 0.11
98 29 0.10
99 14 0.05
101 1 0.00
102 2 0.01
103 40 0.13
104 28 0.09
105 42 0.14
106 8 0.03
107 23 0.08
108 9 0.03
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (102 bp):
TATTAAATTTTAAATTACTATTTAAAAAATAATAAAAATTAAAAAATATTTTATATTAAATCTCT
AATTTATTTTAAAAAATAAAAAATAAAAAATATTTTA
Found at i:576773 original size:202 final size:197
Alignment explanation
Indices: 576478--576935 Score: 538
Period size: 202 Copynumber: 2.3 Consensus size: 197
576468 GAAATGACAT
* * *
576478 TATTAAATTTTGAATTATTATTTAAAAAATTAATAAAAATTTAAA-ATTTTATATTCAATCTCAA
1 TATTAAA-TTTGAATTACTATTTAAAAAA-TAATAAAAATTAAAATATTTTATATTAAATCTCAA
* * *
576542 ATTACTATTTAAAAAAATAAAATATATTTTATATTAAATTTTAAATTATTATTT-AAAAAT-ATA
64 ATTACTATTTAAAAAAATAAAAAATATTTTATAATAAATTTTAAATTACTATTTAAAAAATAATA
* *
576605 AAA-ATTAAAATATATATTTTATTTTAAATCTCT-ATTTACT-TTTAAAAAATAAGAAAATAAAA
129 AAATATTAAAA-A-ATATTTTATATTAAATC-CTAATTTA-TAATTAAAAAATAAGAAAA-AAAA
576667 TATATATTTTA
189 -A-ATATTTTA
*
576678 TATTTTAAATCTTGAATTACT-TTTAAAAAATAATAAAAATTAAAAATATTTTATATTAAATCTT
1 TA--TTAAAT-TTGAATTACTATTTAAAAAATAATAAAAATT-AAAATATTTTATATTAAATCTC
* * *
576742 AAATTA-T-TTTGAAAAATATTAAAAAATATTTTATAATAAATTTTGAGTTACTATTTAAAAAAT
62 AAATTACTATTT-AAAAA-AATAAAAAATATTTTATAATAAATTTTAAATTACTATTTAAAAAAT
* *
576805 AATAAAATATTAAAAAATATTTTATATTAAATCCTAATTTATAATTAAAAAATAATAAAAATAAA
125 AATAAAATATTAAAAAATATTTTATATTAAATCCTAATTTATAATTAAAAAATAAGAAAAAAAAA
576870 ATATTTTA
190 ATATTTTA
*
576878 TATTAAATTCTAAATTACTATTTGAATAAAATAATAAAAAATTTAAAATATTTTATAT
1 TATTAAATT-TGAATTACTATTT-AA-AAAATAAT-AAAAA-TTAAAATATTTTATAT
576936 ATGTATTGGG
Statistics
Matches: 225, Mismatches: 15, Indels: 34
0.82 0.05 0.12
Matches are distributed among these distances:
197 1 0.00
198 14 0.06
199 3 0.01
200 28 0.12
201 28 0.12
202 93 0.41
203 44 0.20
204 7 0.03
205 7 0.03
ACGTcount: A:0.52, C:0.03, G:0.02, T:0.43
Consensus pattern (197 bp):
TATTAAATTTGAATTACTATTTAAAAAATAATAAAAATTAAAATATTTTATATTAAATCTCAAAT
TACTATTTAAAAAAATAAAAAATATTTTATAATAAATTTTAAATTACTATTTAAAAAATAATAAA
ATATTAAAAAATATTTTATATTAAATCCTAATTTATAATTAAAAAATAAGAAAAAAAAAATATTT
TA
Found at i:576793 original size:149 final size:148
Alignment explanation
Indices: 576554--576919 Score: 388
Period size: 149 Copynumber: 2.4 Consensus size: 148
576544 TACTATTTAA
* *
576554 AAAAATAAAATATATTTTATATTAAATTTTAAATTATTATTTAAAAATATAAAAATTAAAATATA
1 AAAAATAAAA-ATATTTTATATTAAA-TTTAAATTACTATTTGAAAA-AT----ATTAAAA-A-A
** * *
576619 TATTTTATTTTAAATCTCTATTTACT-TTTAAAAAATAAGAAAATA-AAATATATATTTTATATT
57 TATTTTATAATAAATCTCTAGTTACTATTTAAAAAATAAGAAAATATAAA-AAATATTTTATA--
* *
576682 TTAAATCTTGAA-TTACT-TTTAAAAAATAAT
119 TTAAATCCT-AATTTA-TAATTAAAAAATAAT
576712 AAAAATTAAAAATATTTTATATTAAATCTTAAATTA-T-TTTGAAAAATATTAAAAAATATTTTA
1 AAAAA-TAAAAATATTTTATATTAAAT-TTAAATTACTATTTGAAAAATATTAAAAAATATTTTA
* *
576775 TAATAAAT-TTTGAGTTACTATTTAAAAAATAATAAAATATTAAAAAATATTTTATATTAAATCC
64 TAATAAATCTCT-AGTTACTATTTAAAAAATAAGAAAATA-TAAAAAATATTTTATATTAAATCC
576839 TAATTTATAATTAAAAAATAAT
127 TAATTTATAATTAAAAAATAAT
*
576861 AAAAAT-AAAATATTTTATATTAAATTCTAAATTACTATTTGAATAAAATAATAAAAAAT
1 AAAAATAAAAATATTTTATATTAAATT-TAAATTACTATTTG-A-AAAATATTAAAAAAT
576920 TTAAAATATT
Statistics
Matches: 185, Mismatches: 10, Indels: 33
0.81 0.04 0.14
Matches are distributed among these distances:
146 1 0.01
147 26 0.14
148 7 0.04
149 52 0.28
150 20 0.11
151 32 0.17
152 3 0.02
155 2 0.01
156 7 0.04
157 2 0.01
158 28 0.15
159 5 0.03
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.42
Consensus pattern (148 bp):
AAAAATAAAAATATTTTATATTAAATTTAAATTACTATTTGAAAAATATTAAAAAATATTTTATA
ATAAATCTCTAGTTACTATTTAAAAAATAAGAAAATATAAAAAATATTTTATATTAAATCCTAAT
TTATAATTAAAAAATAAT
Found at i:576812 original size:44 final size:42
Alignment explanation
Indices: 576712--576815 Score: 111
Period size: 44 Copynumber: 2.4 Consensus size: 42
576702 AAAAAATAAT
* *
576712 AAAAATTAAAAATATTTTATATTAAATCTTAAATTATTTTGA
1 AAAAATAAAAAATATTTTATAATAAATCTTAAATTATTTTGA
* * *
576754 AAAATATTAAAAAATATTTTATAATAAATTTTGAGTTACTATTT-A
1 AAAA-A-TAAAAAATATTTTATAATAAATCTTAAATTA-T-TTTGA
576799 AAAAATAATAAAATATT
1 AAAAATAA-AAAATATT
576816 AAAAAATATT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
42 4 0.08
43 4 0.08
44 35 0.67
45 6 0.12
46 3 0.06
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (42 bp):
AAAAATAAAAAATATTTTATAATAAATCTTAAATTATTTTGA
Found at i:576817 original size:54 final size:53
Alignment explanation
Indices: 576754--576935 Score: 219
Period size: 54 Copynumber: 3.4 Consensus size: 53
576744 ATTATTTTGA
* * * *
576754 AAAATATTAAAAAATATTTTATAATAAATTTTGAGTTACTATTTAAAAAATAAT
1 AAAATATT-AAAAATATTTTATATTAAATTCTAAATTACTATTTAAAAAATAAT
* * *
576808 AAAATATTAAAAAATATTTTATATTAAATCCTAATTTA-TAATTAAAAAATAAT
1 AAAATATT-AAAAATATTTTATATTAAATTCTAAATTACTATTTAAAAAATAAT
576861 AAAA-A-T-AAAATATTTTATATTAAATTCTAAATTACTATTTGAATAAAATAAT
1 AAAATATTAAAAATATTTTATATTAAATTCTAAATTACTATTT-AA-AAAATAAT
* *
576913 AAAAAATTTAAAATATTTTATAT
1 AAAATATTAAAAATATTTTATAT
576936 ATGTATTGGG
Statistics
Matches: 113, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
49 26 0.23
50 4 0.04
51 3 0.03
52 13 0.12
53 19 0.17
54 34 0.30
55 14 0.12
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (53 bp):
AAAATATTAAAAATATTTTATATTAAATTCTAAATTACTATTTAAAAAATAAT
Found at i:576849 original size:42 final size:47
Alignment explanation
Indices: 576703--576935 Score: 132
Period size: 49 Copynumber: 4.6 Consensus size: 47
576693 ATTACTTTTA
* * *
576703 AAAAATAATAAAAATTAAAAATATTTTATATTAAATCTTAAATTAT-TTT
1 AAAAATAAT-AAAA-T-AAAATATTTTATATTAAATCCTAATTTATAATT
* * ** * * *
576752 GAAAAAT-AT-TAA-AAAATATTTTATAATAAATTTTGAGTTACTATTT
1 -AAAAATAATAAAATAAAATATTTTATATTAAATCCTAATTTA-TAATT
576798 AAAAAATAATAAAATATTAAAAAATATTTTATATTAAATCCTAATTTATAATT
1 -AAAAATAAT-AAA-A-T--AAAATATTTTATATTAAATCCTAATTTATAATT
* * *
576851 AAAAAATAATAAAAATAAAATATTTTATATTAAATTCTAAATTACTATTT
1 -AAAAATAAT-AAAATAAAATATTTTATATTAAATCCTAATTTA-TAATT
576901 GAATAAAATAATAAAAAATTTAAAATATTTTATAT
1 --A-AAAATAAT--AAAA--TAAAATATTTTATAT
576936 ATGTATTGGG
Statistics
Matches: 151, Mismatches: 16, Indels: 27
0.78 0.08 0.14
Matches are distributed among these distances:
44 24 0.16
45 1 0.01
46 9 0.06
47 4 0.03
49 29 0.19
50 11 0.07
51 3 0.02
52 9 0.06
53 23 0.15
54 23 0.15
55 15 0.10
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.41
Consensus pattern (47 bp):
AAAAATAATAAAATAAAATATTTTATATTAAATCCTAATTTATAATT
Found at i:576860 original size:18 final size:17
Alignment explanation
Indices: 576796--576860 Score: 58
Period size: 18 Copynumber: 3.7 Consensus size: 17
576786 GAGTTACTAT
**
576796 TTAAAAAATAATAAAATA
1 TTAAAAAATAAT-TTATA
*
576814 TTAAAAAATATTTTATA
1 TTAAAAAATAATTTATA
***
576831 TTAAATCCTAATTTATAA
1 TTAAAAAATAATTTAT-A
576849 TTAAAAAATAAT
1 TTAAAAAATAAT
576861 AAAAATAAAA
Statistics
Matches: 36, Mismatches: 10, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
17 15 0.42
18 21 0.58
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAAATAATTTATA
Found at i:577031 original size:22 final size:22
Alignment explanation
Indices: 576979--577031 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
576969 CTTTTGTTGG
*
576979 TTCAATTAAAGTCATATGTACA
1 TTCAATTATAGTCATATGTACA
* * *
577001 TTTAGTTATAGTCATATGTATA
1 TTCAATTATAGTCATATGTACA
577023 TTCAATTAT
1 TTCAATTAT
577032 GTTTAAAGGA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.45
Consensus pattern (22 bp):
TTCAATTATAGTCATATGTACA
Found at i:577128 original size:20 final size:22
Alignment explanation
Indices: 577091--577131 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
577081 CACAAATTAA
*
577091 GAAAGAGAATTGACTTTTTTAT
1 GAAAGAGAATTGAATTTTTTAT
577113 GAAAGA-AATT-AATTTTTTA
1 GAAAGAGAATTGAATTTTTTA
577132 GATAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 4 0.22
22 6 0.33
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.41
Consensus pattern (22 bp):
GAAAGAGAATTGAATTTTTTAT
Found at i:577605 original size:22 final size:22
Alignment explanation
Indices: 577571--577615 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
577561 ATTTAGTTAA
*
577571 AGTTATATATATATATATATTC
1 AGTTATATATATATATACATTC
*
577593 AGTTATAGT-TATATGTACATTC
1 AGTTATA-TATATATATACATTC
577615 A
1 A
577616 ATTTTATTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 19 0.95
23 1 0.05
ACGTcount: A:0.38, C:0.07, G:0.09, T:0.47
Consensus pattern (22 bp):
AGTTATATATATATATACATTC
Found at i:577887 original size:54 final size:55
Alignment explanation
Indices: 577829--577980 Score: 202
Period size: 54 Copynumber: 2.8 Consensus size: 55
577819 TGTTTTTAAT
*
577829 TTTTTAAATAGTAATTCTGA-ATTTAATATAAAATATATTTTTTAATGGTTATTA
1 TTTTTAAATAATAATTCTGAGATTTAATATAAAATATATTTTTTAATGGTTATTA
* * * * **
577883 TTTTTAAATATTAATTC-AAGAGTTAATATATAATATATTTTTTAATTTTTATTA
1 TTTTTAAATAATAATTCTGAGATTTAATATAAAATATATTTTTTAATGGTTATTA
*
577937 TTTTTAAATAATAATT-TGAGTTTTAATATAAAATATAATTTTTT
1 TTTTTAAATAATAATTCTGAGATTTAATATAAAATAT-ATTTTTT
577981 TATTTTTAAT
Statistics
Matches: 84, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
53 1 0.01
54 76 0.90
55 7 0.08
ACGTcount: A:0.39, C:0.01, G:0.05, T:0.54
Consensus pattern (55 bp):
TTTTTAAATAATAATTCTGAGATTTAATATAAAATATATTTTTTAATGGTTATTA
Found at i:580465 original size:19 final size:21
Alignment explanation
Indices: 580419--580471 Score: 74
Period size: 19 Copynumber: 2.6 Consensus size: 21
580409 TTTCAATAAT
580419 TTGTATCGATACAAACAGTAA
1 TTGTATCGATACAAACAGTAA
* *
580440 ATGTATCGATACATA-AGT-A
1 TTGTATCGATACAAACAGTAA
580459 TTGTATCGATACA
1 TTGTATCGATACA
580472 GTGTATCGCT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 13 0.45
20 3 0.10
21 13 0.45
ACGTcount: A:0.40, C:0.13, G:0.15, T:0.32
Consensus pattern (21 bp):
TTGTATCGATACAAACAGTAA
Found at i:580559 original size:20 final size:19
Alignment explanation
Indices: 580534--580608 Score: 96
Period size: 20 Copynumber: 3.8 Consensus size: 19
580524 TTTACCCAGA
*
580534 TGTATCAATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
580554 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
580574 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
580594 TGTATCGATACATTT
1 TGTATCGATACATTT
580609 AGGCATTTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:583091 original size:51 final size:51
Alignment explanation
Indices: 582929--583097 Score: 166
Period size: 51 Copynumber: 3.4 Consensus size: 51
582919 TTATTTTCAA
* * ** * **
582929 GGGGATACTCCAATCCCGGTTCCATTTCCAAAACATCAATTTTTCTTAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCACAATC
* * * ** *
582980 GGGGATACTCCAACTCTGA-TTT-TTT-TAAAAGCATCGATTTACCGCAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAA-CATCAATTTTTCACAATC
*
583029 GGGGATACTCCAACCCCGATTTTATTTCTAAAACA-CAAATTTTTCACAATT
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATC-AATTTTTCACAATC
583080 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
583098 TTATTTTTGA
Statistics
Matches: 94, Mismatches: 19, Indels: 10
0.76 0.15 0.08
Matches are distributed among these distances:
48 4 0.04
49 33 0.35
50 5 0.05
51 47 0.50
52 5 0.05
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTTCACAATC
Found at i:583276 original size:51 final size:51
Alignment explanation
Indices: 583216--583333 Score: 159
Period size: 51 Copynumber: 2.3 Consensus size: 51
583206 TTATTTTCGA
*
583216 GGGGATACTCCAACCCCGATTTTA-TTTCTAAAATACCAAATTTTC-ATAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACACC-AATTTTCTATAATC
* * *
583267 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTCTAATC
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATC
*
583318 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
583334 TATTATTTTC
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
50 7 0.12
51 48 0.81
52 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATC
Found at i:583351 original size:130 final size:128
Alignment explanation
Indices: 583189--583458 Score: 298
Period size: 129 Copynumber: 2.1 Consensus size: 128
583179 TATGTCATCG
* ** * *
583189 GGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCC-GATTTTATTTCTAAAATACC
1 GGGATACTCCAATCCCATTATTTTCGAGGGGATACTCCAACCCCAG-CCTCATTTCTAAAACACC
* * *
583253 AAATTTT-CATAATCGGGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTTCTC-TAA
65 -AATTTTCCACAATC-GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTC-CATAA
583316 TC
127 TC
* *
583318 AGGGATACTCCAA-CCCTATTATTTTCGCA-GGGATACTCTAACCCCAGCCTCATTTCTAAAGCA
1 -GGGATACTCCAATCCC-ATTATTTTCG-AGGGGATACTCCAACCCCAGCCTCATTTCTAAAACA
* * * * *
583381 TCGATTTTCCACAATCGGGATACTCCAACCCCGATTTTATTTTTAGAACACCGATTTTCCATAAT
63 CCAATTTTCCACAATCGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCATAAT
583446 C
128 C
583447 GGAGATACTCCA
1 GG-GATACTCCA
583459 GCCTTGTTAT
Statistics
Matches: 119, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
128 3 0.03
129 60 0.50
130 54 0.45
131 2 0.02
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (128 bp):
GGGATACTCCAATCCCATTATTTTCGAGGGGATACTCCAACCCCAGCCTCATTTCTAAAACACCA
ATTTTCCACAATCGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCATAATC
Found at i:595507 original size:1 final size:1
Alignment explanation
Indices: 595503--595569 Score: 71
Period size: 1 Copynumber: 67.0 Consensus size: 1
595493 ATTCTTTTTC
* * * * * **
595503 AAAAAAAAAAAAAAACAAAAACAAAAAAAAACAAAAAAACAAAAAGAAAAAAAAAGGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
595568 AA
1 AA
595570 GAATCTGCTT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 54 1.00
ACGTcount: A:0.90, C:0.06, G:0.04, T:0.00
Consensus pattern (1 bp):
A
Found at i:595523 original size:16 final size:16
Alignment explanation
Indices: 595502--595568 Score: 82
Period size: 16 Copynumber: 4.0 Consensus size: 16
595492 CATTCTTTTT
595502 CAAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAAA
*
595518 CAAAAACAAAAAAAAA
1 CAAAAAAAAAAAAAAA
595534 CAAAAAAACAAAAAGAAA
1 CAAAAAAA-AAAAA-AAA
595552 -AAAAAAGGAAAAAAAAA
1 CAAAAAA--AAAAAAAAA
595569 AGAATCTGCT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
16 22 0.49
17 14 0.31
18 8 0.18
19 1 0.02
ACGTcount: A:0.88, C:0.07, G:0.04, T:0.00
Consensus pattern (16 bp):
CAAAAAAAAAAAAAAA
Found at i:595538 original size:24 final size:23
Alignment explanation
Indices: 595503--595566 Score: 92
Period size: 24 Copynumber: 2.7 Consensus size: 23
595493 ATTCTTTTTC
595503 AAAAAAAAAAAAAAACAAAAACA
1 AAAAAAAAAAAAAAACAAAAACA
*
595526 AAAAAAAACAAAAAAACAAAAAGA
1 AAAAAAAA-AAAAAAACAAAAACA
595550 AAAAAAAAGGAAAAAAA
1 AAAAAAAA--AAAAAAA
595567 AAAGAATCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 8 0.22
24 22 0.59
25 7 0.19
ACGTcount: A:0.89, C:0.06, G:0.05, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAAAACAAAAACA
Found at i:596643 original size:55 final size:54
Alignment explanation
Indices: 596559--597126 Score: 704
Period size: 55 Copynumber: 10.1 Consensus size: 54
596549 GATACCTTTT
* * *
596559 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAATCTTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACG
* *
596614 CCTTTCAAAGCCCACACAAGTTGGAGGCACCTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
* *
596669 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
* * *
596724 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAACAGGACT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
* * *
596779 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGTAGGATG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACG
* * * * *
596834 CCTTTCAAAGCCCACACAAGTTAGTGGCATTTTCCAATCCTCAAAGACCAGTACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
* *
596889 CCTTTCAAAGCCCACACAAGTTGGTGGCATTCTCCAGTCCTCAAAGAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCACT-TCCAGTCCTCAAAGAGCAGGACG
* *
596944 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGATG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
596999 CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGCAGGACG
1 C---C--TTT-CAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACG
* **
597060 CCTTTCCTTTTCAAAGCCCACACCAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACG
1 -----CC-TTTCAAAGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGAGCAGGACG
597121 CACTTT
1 C-CTTT
597127 ATTTTCCTCT
Statistics
Matches: 452, Mismatches: 43, Indels: 35
0.85 0.08 0.07
Matches are distributed among these distances:
54 5 0.01
55 332 0.73
56 11 0.02
57 1 0.00
58 1 0.00
60 4 0.01
61 92 0.20
62 4 0.01
63 1 0.00
66 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.23
Consensus pattern (54 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACG
Found at i:596675 original size:26 final size:26
Alignment explanation
Indices: 596599--596675 Score: 66
Period size: 26 Copynumber: 2.8 Consensus size: 26
596589 TTCCCAATCT
596599 TCAAAGAGCAGGACGCCTTTCAAAGCCC
1 TCAAAGAGCAGGACGCCTTTC--AGCCC
* * * * *
596627 ACACAAGTTGGAGG-CACCTTTCAGTCC
1 TCA-AAG-AGCAGGACGCCTTTCAGCCC
596654 TCAAAGAGCAGGACGCCTTTCA
1 TCAAAGAGCAGGACGCCTTTCA
596676 AAGCCCACAC
Statistics
Matches: 37, Mismatches: 9, Indels: 8
0.69 0.17 0.15
Matches are distributed among these distances:
25 4 0.11
26 11 0.30
27 6 0.16
28 2 0.05
29 10 0.27
30 4 0.11
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (26 bp):
TCAAAGAGCAGGACGCCTTTCAGCCC
Found at i:597156 original size:42 final size:41
Alignment explanation
Indices: 597097--597178 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 41
597087 TGGTGGCACT
*
597097 TTTTAGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTC
1 TTTTAGTCCTCAAAGAGCAGGACGCA-TTTAGTTTCC-CTTTC
*
597140 TTTTA-TCCTCAAAGAGCAGGACGTATTTAGTTTCCCTTT
1 TTTTAGTCCTCAAAGAGCAGGACGCATTTAGTTTCCCTTT
597179 TTCCTTTGTC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 4 0.11
41 9 0.24
42 19 0.51
43 5 0.14
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (41 bp):
TTTTAGTCCTCAAAGAGCAGGACGCATTTAGTTTCCCTTTC
Found at i:597265 original size:42 final size:40
Alignment explanation
Indices: 597211--597310 Score: 112
Period size: 40 Copynumber: 2.4 Consensus size: 40
597201 GACGTACTCT
* ** *
597211 TTTTCACTTTGTCCTCAAGAAGCAGGACACT-TTCCTTTTTTTC
1 TTTTC-CTTTGTCCTCAAGAAGCAAGAC-CTATT--TCATTCTC
*
597254 TTTTCCTTTGTCCTCAAGGAGCAAGACCTATTTCATTCTC
1 TTTTCCTTTGTCCTCAAGAAGCAAGACCTATTTCATTCTC
597294 TTTTCCTTTGTCCTCAA
1 TTTTCCTTTGTCCTCAA
597311 AAAGTGCGAC
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
40 22 0.43
41 2 0.04
42 22 0.43
43 5 0.10
ACGTcount: A:0.18, C:0.27, G:0.11, T:0.44
Consensus pattern (40 bp):
TTTTCCTTTGTCCTCAAGAAGCAAGACCTATTTCATTCTC
Found at i:598064 original size:13 final size:13
Alignment explanation
Indices: 598046--598071 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
598036 CATTATTTAA
598046 TGTATCGATACAT
1 TGTATCGATACAT
598059 TGTATCGATACAT
1 TGTATCGATACAT
598072 CGATATTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:598135 original size:20 final size:19
Alignment explanation
Indices: 598110--598183 Score: 103
Period size: 20 Copynumber: 3.7 Consensus size: 19
598100 TTTACTCAGA
598110 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
598130 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
598150 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
598170 TGTATCGATACATT
1 TGTATCGATACATT
598184 CAGGCATTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.14, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:601481 original size:139 final size:138
Alignment explanation
Indices: 601223--601502 Score: 488
Period size: 139 Copynumber: 2.0 Consensus size: 138
601213 CCTGTCCGAA
* *
601223 TACCCACTCTTGGCATGAAAGCGGACCTGGTAGTTATCAAGGATTTGGTTTCGAAAAAAATGGTG
1 TACCCACTCTCGGCATGAAAGCGGACCCGGTAGTTATCAAGGATTTGGTTTCGAAAAAAATGGTG
* *
601288 AGATGTTCCCAAGACCTACTATTGACGTAAAAGTACCTAGAGATCCTAAAATTTAAAGTGGTAAA
66 AGATGTTCCCAAAACCTACTATTGACGTAAAAGTACCTAGAGAGCCTAAAATTTAAAGTGGTAAA
601353 AACTAACC
131 AACTAACC
*
601361 TACCCACTCTCGGCATGAAAGCGGACCCGGTAGTTATCTAGGATTTGGTTTCGAAAAAAAATGGT
1 TACCCACTCTCGGCATGAAAGCGGACCCGGTAGTTATCAAGGATTTGGTTTCG-AAAAAAATGGT
* *
601426 GAGATGTTCCTAAAACCTACTATTGACGTAAAAGTACCTAGAGAGCCTAAGATTTAAAGTGGTAA
65 GAGATGTTCCCAAAACCTACTATTGACGTAAAAGTACCTAGAGAGCCTAAAATTTAAAGTGGTAA
601491 AAACTAACC
130 AAACTAACC
601500 TAC
1 TAC
601503 TCCTAACTCA
Statistics
Matches: 134, Mismatches: 7, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
138 50 0.37
139 84 0.63
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (138 bp):
TACCCACTCTCGGCATGAAAGCGGACCCGGTAGTTATCAAGGATTTGGTTTCGAAAAAAATGGTG
AGATGTTCCCAAAACCTACTATTGACGTAAAAGTACCTAGAGAGCCTAAAATTTAAAGTGGTAAA
AACTAACC
Found at i:602265 original size:150 final size:154
Alignment explanation
Indices: 601932--602335 Score: 505
Period size: 150 Copynumber: 2.6 Consensus size: 154
601922 CTCAATAATG
* * * * *
601932 TCATTTTGTACCTTAATAGAAAACCAAAAAGATAAAAAAAGTTTT-GAAATCTTTTATACCCCTA
1 TCATTTCGTACCTTAATGGAAACCCGAAAAGATAAGAAAAGTTTTCGAAATCTTTTATACCCCTA
* * * *
601996 TGGACATCTATAGGAATATGAAAGATTAAAAAATGATTAACATTTATTTTAATTGTGAGAGAATT
66 TGGACACCTATAGGAATATAAAAGA-TAAAAAATGATGAAC---TATTTTAATTATGAGAGAATT
602061 AATTTAATTTTGTTTATTTATTTTTGAAAAAAA
127 AATTTAATTTTG--T-TTTA-TTTTG-AAAAAA
* * * *
602094 TCATTTCGTACCTTAATGGAAACCCGAAAAGATACGAAAAGTTTTCAAAATCGTTTATACCGCTA
1 TCATTTCGTACCTTAATGGAAACCCGAAAAGATAAGAAAAGTTTTCGAAATCTTTTATACCCCTA
* *
602159 TGGACACCCATAGGAATATAAAAGATAAAAACATGATGAAC-ATTTTAATTATG-GGGAATTAAT
66 TGGACACCTATAGGAATATAAAAGATAAAAA-ATGATGAACTATTTTAATTATGAGAGAATTAAT
602222 TTAATTTTG-TTTA-TTTG-AAAAA
130 TTAATTTTGTTTTATTTTGAAAAAA
* ** *
602244 TTATTTCGTATTTTAATGGAAACCCGAAAAGATATGAAAAGTTTTCGAAATCTTTTATACCCCTA
1 TCATTTCGTACCTTAATGGAAACCCGAAAAGATAAGAAAAGTTTTCGAAATCTTTTATACCCCTA
602309 TGGACACCTATAGGAATATAAAAGATA
66 TGGACACCTATAGGAATATAAAAGATA
602336 GATAAATAAT
Statistics
Matches: 217, Mismatches: 23, Indels: 16
0.85 0.09 0.06
Matches are distributed among these distances:
150 89 0.41
152 4 0.02
154 4 0.02
158 18 0.08
159 11 0.05
162 45 0.21
163 46 0.21
ACGTcount: A:0.41, C:0.11, G:0.13, T:0.35
Consensus pattern (154 bp):
TCATTTCGTACCTTAATGGAAACCCGAAAAGATAAGAAAAGTTTTCGAAATCTTTTATACCCCTA
TGGACACCTATAGGAATATAAAAGATAAAAAATGATGAACTATTTTAATTATGAGAGAATTAATT
TAATTTTGTTTTATTTTGAAAAAA
Found at i:602458 original size:29 final size:28
Alignment explanation
Indices: 602401--602459 Score: 66
Period size: 29 Copynumber: 2.1 Consensus size: 28
602391 TTTTTGCCTT
* * *
602401 ATTTGCAATTTAGCCCTAAACTTTTAAA
1 ATTTACAATTTACCCCTAAACTTTCAAA
602429 ATTTACAATTTCACCCCTAAA-TATTCAAA
1 ATTTACAATTT-ACCCCTAAACT-TTCAAA
602458 AT
1 AT
602460 ACCATTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
28 11 0.42
29 15 0.58
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.37
Consensus pattern (28 bp):
ATTTACAATTTACCCCTAAACTTTCAAA
Found at i:603154 original size:22 final size:23
Alignment explanation
Indices: 603120--603180 Score: 61
Period size: 23 Copynumber: 2.6 Consensus size: 23
603110 GTTTTTACTA
*
603120 TTTTTCTACCTATTTTGTCTCT-TT
1 TTTTTCT--CTATTTTCTCTCTATT
*
603144 TTTTTCTCTATTTTCTTTCTATT
1 TTTTTCTCTATTTTCTCTCTATT
* *
603167 TTTTCCTCCATTTT
1 TTTTTCTCTATTTT
603181 TTCAATTGAC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
22 11 0.34
23 14 0.44
24 7 0.22
ACGTcount: A:0.08, C:0.21, G:0.02, T:0.69
Consensus pattern (23 bp):
TTTTTCTCTATTTTCTCTCTATT
Found at i:604034 original size:24 final size:23
Alignment explanation
Indices: 604009--604063 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
603999 ATGAATTAAT
604009 TTTTAAAAAATAAT-TTAATATGA
1 TTTTAAAAAATAATATT-ATATGA
* *
604032 -TTTAAATAATAATATTTTATGAA
1 TTTTAAAAAATAATATTATATG-A
604055 TTTTAAAAA
1 TTTTAAAAA
604064 TAAAAAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
22 16 0.62
23 3 0.12
24 7 0.27
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.45
Consensus pattern (23 bp):
TTTTAAAAAATAATATTATATGA
Found at i:604042 original size:164 final size:163
Alignment explanation
Indices: 603664--604554 Score: 1061
Period size: 164 Copynumber: 5.5 Consensus size: 163
603654 AAAACAATCT
* * * *
603664 AAAACTCATGAAAATAAATTAAATTTTT-AAAATTGAA-TTAATATGAATTAAATAATAATATCT
1 AAAACTCATGGAAATGAATT-AATTTTTAAAAAAT-AATTTAATATGAATTAAATAATAATATTT
603727 GATGAATTTTAAAAAT-AAAAA--AAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCC
64 GATGAATTTTAAAAATAAAAAACCAAGAAAAAT-CCCTCAAAAAAATTACGGAGTAGAAAACTCC
603789 GTATTTCG----AAAAAATTTCAAGGAAAAAAATTCA
128 GTATTTCGAAAAAAAAAATTTCAAGG-AAAAAATTCA
* * * * *
603822 AAAACTCATGAAAACGAATTAACTTTTAAAAACTAATTTAATATGAATTCAATAATAATATTTGA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
* *
603887 TGAATTTTAAAAATAAAAAACCAAGAAAAATCTCCTTAAAAAAATTACGGAGTGGAAAACTCCGT
66 TGAATTTTAAAAATAAAAAACCAAGAAAAATC-CCTCAAAAAAATTACGGAGTAGAAAACTCCGT
*
603952 GTTTCGAAAAAAAAAATTTCAAGGAAAAAATTCA
130 ATTTCGAAAAAAAAAATTTCAAGGAAAAAATTCA
* * *
603986 AATACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGATTTAAATAATAATATTTTA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
* * * **
604051 TGAATTTTAAAAATAAAAAACTAAGAAAAATCCTCTCGAAATAATTACGGAGTAGAAAACTCTAT
66 TGAATTTTAAAAATAAAAAACCAAGAAAAATCC-CTCAAAAAAATTACGGAGTAGAAAACTCCGT
604116 ATTTC---AAAAAAAA-TTCAA-GAGAAAAATTCA
130 ATTTCGAAAAAAAAAATTTCAAGGA-AAAAATTCA
* *
604146 AAAACTCATGGAAATGAATTAA-CTTTAAAAAA-GATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
* ** *
604209 TGAATTTTAAAAATAAAAAATCAAGAAAAATCCC-CTAAAAAAATTACAAAGTAGAAAACTTCGT
66 TGAATTTTAAAAATAAAAAACCAAGAAAAATCCCTC-AAAAAAATTACGGAGTAGAAAACTCCGT
*
604273 ATTTCAGAAAAAAGAGAATTTCAAGGAAAAAATTACA
130 ATTTC-GAAAAAA-AAAATTTCAAGGAAAAAATT-CA
*
604310 AAAA-TCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
* ** * * *
604374 TTAATTTTAAAAATAAAAAATTAGGAAAAATCCCCCCCAAAAAAAATTACAGAGTAGAAAACTCC
66 TGAATTTTAAAAATAAAAAACCAAGAAAAAT--CCCTC-AAAAAAATTACGGAGTAGAAAACTCC
* * * *
604439 ATATTTCGAAAACATGAGAATTTCAAGGAAAAAA-TAA
128 GTATTTCGAAAA-A-AAAAATTTCAAGGAAAAAATTCA
* * * *
604476 AAAACTCAT-GAAACTG-ATTGAATCTTTGAAAACTGATTTAATAT-ATATTAAATAATAATATT
1 AAAACTCATGGAAA-TGAATT-AATTTTTAAAAAATAATTTAATATGA-ATTAAATAATAATATT
* *
604538 TGCTGAATTTTTAAAAT
63 TGATGAATTTTAAAAAT
604555 TTTAAACCCT
Statistics
Matches: 643, Mismatches: 58, Indels: 55
0.85 0.08 0.07
Matches are distributed among these distances:
156 1 0.00
157 35 0.05
158 122 0.19
159 16 0.02
160 36 0.06
161 56 0.09
162 3 0.00
163 30 0.05
164 144 0.22
165 72 0.11
166 13 0.02
167 65 0.10
168 50 0.08
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (163 bp):
AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
TGAATTTTAAAAATAAAAAACCAAGAAAAATCCCTCAAAAAAATTACGGAGTAGAAAACTCCGTA
TTTCGAAAAAAAAAATTTCAAGGAAAAAATTCA
Found at i:604185 original size:322 final size:322
Alignment explanation
Indices: 603664--604554 Score: 1158
Period size: 322 Copynumber: 2.7 Consensus size: 322
603654 AAAACAATCT
* * * *
603664 AAAACTCATGAAAATAAATTAAATTTTT-AAAATTGAA-TTAATATGAATTAAATAATAATATCT
1 AAAACTCATGGAAATGAATT-AATTTTTAAAAAAT-AATTTAATATGAATTAAATAATAATATTT
*
603727 GATGAATTTTAAAAAT-AAAAA-AAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCG
64 GATGAATTTTAAAAATAAAAAATAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCA
* * * * *
603790 TATTTCGAAAAAATTTCAAGGAAAAAAATTCAAAAACTCATGAAAACGAATTAACTTTTAAAAAC
129 TATTTCAAAAAAAATTCAA-GAGAAAAATTCAAAAACTCATGGAAATGAATTAAC-TTTAAAAA-
*
603855 TA-ATTTAATATGAATTCAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATC
191 -AGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATC
* ** * *
603919 TCCTTAAAAAAATTACGGAGTGGAAAACTCCGTGTTTC-GAAAAAA-AAAATTTCAAGGAAAAAA
255 -CCCTAAAAAAATTACAAAGTAGAAAACTCCGTATTTCAGAAAAAAGAAAATTTCAAGGAAAAAA
603982 TT-C
319 TTAC
* *
603985 AAATACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGATTTAAATAATAATATTTT
1 AAA-ACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTG
* * * *
604050 ATGAATTTTAAAAATAAAAAACTAAGAAAAATCCTCTCGAAATAATTACGGAGTAGAAAACTCTA
65 ATGAATTTTAAAAATAAAAAA-TAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCA
604115 TATTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGA
129 TATTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGA
*
604180 TTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAATCAAGAAAAATCCCCT
194 TTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCT
* *
604245 AAAAAAATTACAAAGTAGAAAACTTCGTATTTCAGAAAAAAGAGAATTTCAAGGAAAAAATTAC
259 AAAAAAATTACAAAGTAGAAAACTCCGTATTTCAGAAAAAAGAAAATTTCAAGGAAAAAATTAC
* *
604309 AAAAATCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
* * * *
604374 TTAATTTTAAAAATAAAAAATTAGGAAAAATCCCCCCCAAAAAAAATTACAGAGTAGAAAACTCC
66 TGAATTTTAAAAATAAAAAA-TAAGAAAAAT-CCCCTC-AAAAAAATTACGGAGTAGAAAACTCC
* *
604439 ATATTTCGAAAACATGAGAATTTCAAG-GAAAAAATAAAAAACTCAT-GAAACTG-ATTGAATCT
128 ATATTTC-AAAA-A--A-AA-TTCAAGAGAAAAATTCAAAAACTCATGGAAA-TGAATT-AA-CT
** * *
604501 TTGAAAACTGATTTAATAT-ATATTAAATAATAATATTTGCTGAATTTTTAAAAT
184 TT-AAAAAAGATTTAATATGA-ATTAAATAATAATATTTGATGAATTTTAAAAAT
604555 TTTAAACCCT
Statistics
Matches: 503, Mismatches: 44, Indels: 35
0.86 0.08 0.06
Matches are distributed among these distances:
321 44 0.09
322 126 0.25
323 118 0.23
324 40 0.08
325 83 0.17
326 4 0.01
327 1 0.00
329 8 0.02
330 23 0.05
331 11 0.02
332 45 0.09
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (322 bp):
AAAACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGAATTAAATAATAATATTTGA
TGAATTTTAAAAATAAAAAATAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCATA
TTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGATT
TAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATCCCCTAA
AAAAATTACAAAGTAGAAAACTCCGTATTTCAGAAAAAAGAAAATTTCAAGGAAAAAATTAC
Found at i:604382 original size:323 final size:320
Alignment explanation
Indices: 603664--604554 Score: 1154
Period size: 323 Copynumber: 2.7 Consensus size: 320
603654 AAAACAATCT
* * * *
603664 AAAACTCATGAAAATAAATTAAATTTTT--AAAATTGAATTAATATGAATTAAATAATAATATCT
1 AAAACTCATGGAAATGAATT-AATTTTTAAAAAATT-ATTTAATATGAATTAAATAATAATATTT
*
603727 GATGAATTTTAAAAAT-AAAAA-AAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCG
64 GATGAATTTTAAAAATAAAAAATAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCA
* * * * *
603790 TATTTCGAAAAAATTTCAAGGAAAAAAATTCAAAAACTCATGAAAACGAATTAACTTTTAAAAAC
129 TATTTCAAAAAAAATTCAA-GAGAAAAATTCAAAAACTCATGGAAATGAATTAAC-TTTAAAAA-
*
603855 TA-ATTTAATATGAATTCAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATC
191 -AGATTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATC
* ** * *
603919 TCCTTAAAAAAATTACGGAGTGGAAAACTCCGTGTTTCGAAAAAAAAAATTTCAAGGAAAAAATT
255 TCCCTAAAAAAATTACAAAGTAGAAAACTCCGTATTTCGAAAAAAAAAATTTCAAGGAAAAAATT
603984 C
320 C
* * *
603985 AAATACTCATGGAAATGAATTAATTTTTAAAAAATAATTTAATATGATTTAAATAATAATATTTT
1 AAA-ACTCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTG
* * * *
604050 ATGAATTTTAAAAATAAAAAACTAAGAAAAATCCTCTCGAAATAATTACGGAGTAGAAAACTCTA
65 ATGAATTTTAAAAATAAAAAA-TAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCA
604115 TATTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGA
129 TATTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGA
*
604180 TTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAATCAAGAAAAATC-CCC
194 TTTAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATCTCCC
* *
604244 TAAAAAAATTACAAAGTAGAAAACTTCGTATTTCAGAAAAAAGAGAATTTCAAGGAAAAAATTAC
259 TAAAAAAATTACAAAGTAGAAAACTCCGTATTTC-GAAAAAA-AAAATTTCAAGGAAAAAATT-C
*
604309 AAAAATCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTGA
1 AAAACTCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTGA
* * * *
604374 TTAATTTTAAAAATAAAAAATTAGGAAAAATCCCCCCCAAAAAAAATTACAGAGTAGAAAACTCC
66 TGAATTTTAAAAATAAAAAA-TAAGAAAAAT-CCCCTC-AAAAAAATTACGGAGTAGAAAACTCC
* *
604439 ATATTTCGAAAACATGAGAATTTCAAG-GAAAAAATAAAAAACTCAT-GAAACTG-ATTGAATCT
128 ATATTTC-AAAA-A--A-AA-TTCAAGAGAAAAATTCAAAAACTCATGGAAA-TGAATT-AA-CT
** * *
604501 TTGAAAACTGATTTAATAT-ATATTAAATAATAATATTTGCTGAATTTTTAAAAT
184 TT-AAAAAAGATTTAATATGA-ATTAAATAATAATATTTGATGAATTTTAAAAAT
604555 TTTAAACCCT
Statistics
Matches: 502, Mismatches: 45, Indels: 35
0.86 0.08 0.06
Matches are distributed among these distances:
321 42 0.08
322 122 0.24
323 123 0.25
324 40 0.08
325 83 0.17
326 4 0.01
327 1 0.00
329 8 0.02
330 23 0.05
331 11 0.02
332 45 0.09
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (320 bp):
AAAACTCATGGAAATGAATTAATTTTTAAAAAATTATTTAATATGAATTAAATAATAATATTTGA
TGAATTTTAAAAATAAAAAATAAGAAAAATCCCCTCAAAAAAATTACGGAGTAGAAAACTCCATA
TTTCAAAAAAAATTCAAGAGAAAAATTCAAAAACTCATGGAAATGAATTAACTTTAAAAAAGATT
TAATATGAATTAAATAATAATATTTGATGAATTTTAAAAATAAAAAACCAAGAAAAATCTCCCTA
AAAAAATTACAAAGTAGAAAACTCCGTATTTCGAAAAAAAAAATTTCAAGGAAAAAATTC
Found at i:608053 original size:52 final size:52
Alignment explanation
Indices: 607975--608103 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
607965 CGAAATATGA
* *
607975 AAATTTATCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *
608027 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
608079 AAATTTACCTGCATGTATCGATACA
1 AAATTTACCTGCATGTATCGATACA
608104 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTACCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:608116 original size:52 final size:51
Alignment explanation
Indices: 607975--608123 Score: 210
Period size: 52 Copynumber: 2.9 Consensus size: 51
607965 CGAAATATGA
*
607975 AAATTTATCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
* * *
608027 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTACCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGGC
*
608079 AAATTTACCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 AAATTTACCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
608124 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (51 bp):
AAATTTACCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGGC
Found at i:608130 original size:13 final size:13
Alignment explanation
Indices: 608112--608136 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
608102 CAAAGATCAG
608112 TGTATCGATACAA
1 TGTATCGATACAA
608125 TGTATCGATACA
1 TGTATCGATACA
608137 TTTTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:608199 original size:13 final size:13
Alignment explanation
Indices: 608181--608205 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
608171 CAAAAAAAAA
608181 TGTATCGATACAT
1 TGTATCGATACAT
608194 TGTATCGATACA
1 TGTATCGATACA
608206 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:609207 original size:34 final size:35
Alignment explanation
Indices: 609169--609235 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
609159 CCTTACAACA
609169 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
609203 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
609236 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:609711 original size:13 final size:13
Alignment explanation
Indices: 609693--609718 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
609683 CAATTTTTTG
609693 TGTATCGATACAT
1 TGTATCGATACAT
609706 TGTATCGATACAT
1 TGTATCGATACAT
609719 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:609783 original size:21 final size:21
Alignment explanation
Indices: 609757--609832 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
609747 CTGCCAAGAA
609757 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
609778 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
609798 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
609819 ATGTATCGATACAT
1 ATGTATCGATACAT
609833 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:609802 original size:20 final size:20
Alignment explanation
Indices: 609777--609850 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
609767 ACATCTTTTT
609777 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
609797 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
609818 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
609838 CATGTATCGATAC
1 CATGTATCGATAC
609851 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:609814 original size:41 final size:41
Alignment explanation
Indices: 609757--609850 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
609747 CTGCCAAGAA
609757 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
609798 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
609839 ATGTATCGATAC
1 ATGTATCGATAC
609851 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:610508 original size:21 final size:21
Alignment explanation
Indices: 610467--610510 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
610457 CTCCCCTTTA
* *
610467 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
610488 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
610509 TC
1 TC
610511 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:611520 original size:13 final size:13
Alignment explanation
Indices: 611502--611526 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
611492 GCTGAAGCAA
611502 TGTATCGATACAT
1 TGTATCGATACAT
611515 TGTATCGATACA
1 TGTATCGATACA
611527 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:612126 original size:23 final size:24
Alignment explanation
Indices: 612081--612127 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
612071 CAAAGAATTG
*
612081 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
612105 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
612128 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:614729 original size:34 final size:35
Alignment explanation
Indices: 614691--614757 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
614681 CCTTACAACA
614691 CTATC-TTTC-AAGGCTAAGATAGAAACCTCTCTCT
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTCTCTCT
614725 CTATCTTTTTCAAAGGCTAAGATAGAACCTCTC
1 CTATC-TTTTCAAAGGCTAAGATAGAACCTCTC
614758 AATCACTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 5 0.17
36 12 0.40
37 13 0.43
ACGTcount: A:0.30, C:0.25, G:0.12, T:0.33
Consensus pattern (35 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTCTCTCT
Found at i:615233 original size:13 final size:13
Alignment explanation
Indices: 615215--615240 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
615205 CAATTTTTTG
615215 TGTATCGATACAT
1 TGTATCGATACAT
615228 TGTATCGATACAT
1 TGTATCGATACAT
615241 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:615305 original size:21 final size:21
Alignment explanation
Indices: 615279--615354 Score: 109
Period size: 21 Copynumber: 3.7 Consensus size: 21
615269 CTGCCAAGAA
615279 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
****
615300 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
615320 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
615341 ATGTATCGATACAT
1 ATGTATCGATACAT
615355 TGCAACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
20 16 0.35
21 30 0.65
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:615324 original size:20 final size:20
Alignment explanation
Indices: 615299--615372 Score: 103
Period size: 20 Copynumber: 3.6 Consensus size: 20
615289 ACATCTTTTT
615299 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
****
615319 CATGTATCGATACATCTTTTT
1 CATGTATCGATACAT-TGCAA
615340 CATGTATCGATACATTGCAA
1 CATGTATCGATACATTGCAA
615360 CATGTATCGATAC
1 CATGTATCGATAC
615373 TTTGAATTGT
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
20 29 0.64
21 16 0.36
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (20 bp):
CATGTATCGATACATTGCAA
Found at i:615336 original size:41 final size:41
Alignment explanation
Indices: 615279--615372 Score: 188
Period size: 41 Copynumber: 2.3 Consensus size: 41
615269 CTGCCAAGAA
615279 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
615320 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
615361 ATGTATCGATAC
1 ATGTATCGATAC
615373 TTTGAATTGT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
Found at i:616451 original size:43 final size:43
Alignment explanation
Indices: 615924--616581 Score: 424
Period size: 43 Copynumber: 15.4 Consensus size: 43
615914 AGATGAAGAA
* * * * **
615924 GTCTCCTGGGTCTGAGCCGATGGGCAGACAAAATATATGGGA-
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * * *
615966 GT-TCCTGAGTCTAAGTCGATGGACGGATGAAAGATAAAGGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * * * *
616008 GTCTCCCGGGTTTAAGTCGACGGGCAAACAAAATATAAAAGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
** * * * * *
616051 GTCTCCCAGGTCTAAGCCGATGGGAAGATGAAAGATAAAGAAA
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * * *
616094 GTTTCCTGAGTCTAAGTCGACAGGCAGAC-AAAAATTAAAGGAA
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGA-TAAAGGAG
* * *
616137 GCCTCCTGGGTCTAAGCCGATGGGCAGACAGAAA-ATGAAA-GAA
1 GTCTCCTGGGTCTAAGCCGACGGGCAGAC-GAAAGAT-AAAGGAG
* * * * * * *
616180 GTCTCCCGAGTTTAAGACAACGGGCAGACAAAAGATAAAAGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * *
616223 GTCT-CTCGGGTCTAAGCCAATGGGTAGACGAAAGATAAAGGAG
1 GTCTCCT-GGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * * * *
616266 GTCT-CTCGGGTCTAAACCGACAGGAAAATGAAAAATAAAAGAG
1 GTCTCCT-GGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * *
616309 GTCT-CTCGAGTTTAAGCCGACGAGCAAACGAAAGATAAAAGAG
1 GTCTCCT-GGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * ** *
616352 G--TCC-GAGTCTAAGCTGATAGGCAAACGAAAGATAAAGGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* *
616392 GTCTCTTGGGTCTAAGCCGACGGGGAGACGAAAGATAAAGGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* * * * ** * *
616435 GTCTCCTAGGTTTAAGCCGACGAGTAGATTAAAGAT-AAGTAAA
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAG-GAG
* * * *
616478 GTCTCCCGGGTCTAAGCTGACGGGTAGACGAAAGATAATGGAG
1 GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
* ** *
616521 GTCTCTTGGGTCTAAGCTAACGGGTC-GACGAAAGATAAAGGAA
1 GTCTCCTGGGTCTAAGCCGACGGG-CAGACGAAAGATAAAGGAG
*
616564 TTCTCCTGGGTCTAAGCC
1 GTCTCCTGGGTCTAAGCC
616582 AATAGGCAGA
Statistics
Matches: 475, Mismatches: 125, Indels: 31
0.75 0.20 0.05
Matches are distributed among these distances:
40 31 0.07
41 30 0.06
42 21 0.04
43 384 0.81
44 6 0.01
45 3 0.01
ACGTcount: A:0.35, C:0.17, G:0.29, T:0.19
Consensus pattern (43 bp):
GTCTCCTGGGTCTAAGCCGACGGGCAGACGAAAGATAAAGGAG
Found at i:617453 original size:20 final size:20
Alignment explanation
Indices: 617428--617480 Score: 97
Period size: 20 Copynumber: 2.6 Consensus size: 20
617418 TCCCATAGCT
617428 ATGTATCGATACAGTTCATA
1 ATGTATCGATACAGTTCATA
*
617448 ATGTATCAATACAGTTCATA
1 ATGTATCGATACAGTTCATA
617468 ATGTATCGATACA
1 ATGTATCGATACA
617481 TGCATTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.34
Consensus pattern (20 bp):
ATGTATCGATACAGTTCATA
Found at i:617556 original size:13 final size:13
Alignment explanation
Indices: 617540--617569 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
617530 ACAATTCATC
617540 ATGTATCGATACA
1 ATGTATCGATACA
617553 ATGTATCGATACA
1 ATGTATCGATACA
617566 ATGT
1 ATGT
617570 GCCATGTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:617566 original size:33 final size:33
Alignment explanation
Indices: 617519--617586 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
617509 CGTTTGCAGT
617519 AATGCATCGATACAAT-T-CATCATGTATCGATAC
1 AATGCATCGATACAATGTGC--CATGTATCGATAC
*
617552 AATGTATCGATACAATGTGCCATGTATCGATAC
1 AATGCATCGATACAATGTGCCATGTATCGATAC
617585 AA
1 AA
617587 ATAGTGATAA
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 30 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (33 bp):
AATGCATCGATACAATGTGCCATGTATCGATAC
Found at i:618288 original size:20 final size:20
Alignment explanation
Indices: 618252--618294 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
618242 GGCTCTCGTT
* *
618252 AAAAATTTTCCTTTTGA-AA
1 AAAAATTTCCCTCTTGATAA
618271 AAAAATTCTCCCTCTTGATAA
1 AAAAATT-TCCCTCTTGATAA
618292 AAA
1 AAA
618295 TTTATTTTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 7 0.35
20 8 0.40
21 5 0.25
ACGTcount: A:0.44, C:0.16, G:0.05, T:0.35
Consensus pattern (20 bp):
AAAAATTTCCCTCTTGATAA
Found at i:620044 original size:22 final size:20
Alignment explanation
Indices: 619999--620072 Score: 55
Period size: 21 Copynumber: 3.6 Consensus size: 20
619989 TTTGTTGATG
*
619999 ATTTTGATGAAAAATGAAGT
1 ATTTTGATGAAAAATGAAGA
620019 ATTTTGAAGTGAAAAAT-AAGA
1 ATTTTG-A-TGAAAAATGAAGA
* *
620040 AATTTGA--AAAAGATTTGATGA
1 ATTTTGATGAAAA-A--TGAAGA
620061 ATTTTGATGAAA
1 ATTTTGATGAAA
620073 GGATGTTAGG
Statistics
Matches: 42, Mismatches: 4, Indels: 13
0.71 0.07 0.22
Matches are distributed among these distances:
17 4 0.10
18 1 0.02
20 8 0.19
21 18 0.43
22 8 0.19
23 3 0.07
ACGTcount: A:0.47, C:0.00, G:0.19, T:0.34
Consensus pattern (20 bp):
ATTTTGATGAAAAATGAAGA
Found at i:620045 original size:21 final size:22
Alignment explanation
Indices: 620006--620047 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
619996 ATGATTTTGA
* *
620006 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
620028 TGAAAAAT-AAGAAATTTGAA
1 TGAAAAATGAAGAAATTTGAA
620048 AAAGATTTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:620431 original size:33 final size:32
Alignment explanation
Indices: 620387--620451 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
620377 CACACCCAGA
* *
620387 TGTATCGATACATTATGC-TTTGTATCGATACAT
1 TGTATCAATACATGAT-CATTT-TATCGATACAT
620420 TGTATCAATACATGATCATTTTATCGATACAT
1 TGTATCAATACATGATCATTTTATCGATACAT
620452 GGACAATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (32 bp):
TGTATCAATACATGATCATTTTATCGATACAT
Found at i:620493 original size:34 final size:34
Alignment explanation
Indices: 620450--620518 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
620440 TTATCGATAC
620450 ATGGACAATTATATTGATACATGAAACTGACAGT
1 ATGGACAATTATATTGATACATGAAACTGACAGT
620484 ATGGACAATTATATTGATACATGAAACTGACAGT
1 ATGGACAATTATATTGATACATGAAACTGACAGT
620518 A
1 A
620519 GCTACCTACC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (34 bp):
ATGGACAATTATATTGATACATGAAACTGACAGT
Found at i:620581 original size:62 final size:63
Alignment explanation
Indices: 620484--620632 Score: 239
Period size: 63 Copynumber: 2.4 Consensus size: 63
620474 AACTGACAGT
620484 ATGGACAATTATATTGATACATGAAACTGACAGTAGCTA-CCTACCACTGTTTGTATCGATAC
1 ATGGACAATTATATTGATACATGAAACTGACAGTAGCTACCCTACCACTGTTTGTATCGATAC
*
620546 ATGGACAATTATATTGATACATGAAACTGGCAGTAGCTACCCTACCACTGTTTGTATCGATAC
1 ATGGACAATTATATTGATACATGAAACTGACAGTAGCTACCCTACCACTGTTTGTATCGATAC
* * *
620609 GTGGTAC-ATTGTATCGATACATGA
1 ATGG-ACAATTATATTGATACATGA
620633 TGAATTGTAT
Statistics
Matches: 81, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
62 38 0.47
63 41 0.51
64 2 0.02
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31
Consensus pattern (63 bp):
ATGGACAATTATATTGATACATGAAACTGACAGTAGCTACCCTACCACTGTTTGTATCGATAC
Found at i:620622 original size:20 final size:20
Alignment explanation
Indices: 620597--620650 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
620587 CTACCACTGT
* *
620597 TTGTATCGATACGTGGT-ACA
1 TTGTATCGATACATGATGA-A
620617 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
620637 TTGTATCGATACAT
1 TTGTATCGATACAT
620651 TGCTTGTAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:622254 original size:18 final size:18
Alignment explanation
Indices: 622231--622266 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
622221 GTCAGCAATC
*
622231 AATGATGATGAAGATGGT
1 AATGATAATGAAGATGGT
*
622249 AATGATAATGATGATGGT
1 AATGATAATGAAGATGGT
622267 GACTCGGATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.00, G:0.31, T:0.31
Consensus pattern (18 bp):
AATGATAATGAAGATGGT
Found at i:624915 original size:33 final size:32
Alignment explanation
Indices: 624872--624934 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
624862 CACCTTCAGA
*
624872 TGTATCAATACATAATGCACAGTATCGATACAT
1 TGTATCAATACATAA-CCACAGTATCGATACAT
* *
624905 TGTATTAATACATGACCACAGTATCGATAC
1 TGTATCAATACATAACCACAGTATCGATAC
624935 TTGCAAAGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (32 bp):
TGTATCAATACATAACCACAGTATCGATACAT
Found at i:626664 original size:3 final size:3
Alignment explanation
Indices: 626650--626680 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
626640 CATCAAGGAC
*
626650 GAT GAA GAT GAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
626681 GTGACTCAGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:631222 original size:13 final size:13
Alignment explanation
Indices: 631204--631241 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
631194 CAGCATTCTC
*
631204 TGTATCGATACAT
1 TGTATCGATACAG
*
631217 TGTATCGATATAG
1 TGTATCGATACAG
631230 TGTATCGATACA
1 TGTATCGATACA
631242 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:633671 original size:13 final size:13
Alignment explanation
Indices: 633653--633677 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
633643 ATAATGCACA
633653 GTATCGATACATT
1 GTATCGATACATT
633666 GTATCGATACAT
1 GTATCGATACAT
633678 GACCACTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:635013 original size:13 final size:13
Alignment explanation
Indices: 634995--635020 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
634985 GTAGCCAAAC
634995 ATGTATCGATACA
1 ATGTATCGATACA
635008 ATGTATCGATACA
1 ATGTATCGATACA
635021 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:637282 original size:21 final size:21
Alignment explanation
Indices: 637249--637298 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
637239 TTGCAAGTTG
*
637249 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
637271 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
637292 AAATAAA
1 AAATAAA
637299 AACTTTCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:639110 original size:15 final size:15
Alignment explanation
Indices: 639090--639120 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
639080 GCAAGATGTC
*
639090 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
639105 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
639120 C
1 C
639121 CATACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:641209 original size:13 final size:13
Alignment explanation
Indices: 641191--641255 Score: 112
Period size: 13 Copynumber: 5.0 Consensus size: 13
641181 AAATTTTTCT
641191 TTGTATCGATACA
1 TTGTATCGATACA
641204 TTGTATCGATACA
1 TTGTATCGATACA
*
641217 TTTTATCGATACA
1 TTGTATCGATACA
641230 TTGTATCGATACA
1 TTGTATCGATACA
*
641243 TTTTATCGATACA
1 TTGTATCGATACA
641256 GGGTGATTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:641230 original size:26 final size:26
Alignment explanation
Indices: 641194--641255 Score: 124
Period size: 26 Copynumber: 2.4 Consensus size: 26
641184 TTTTTCTTTG
641194 TATCGATACATTGTATCGATACATTT
1 TATCGATACATTGTATCGATACATTT
641220 TATCGATACATTGTATCGATACATTT
1 TATCGATACATTGTATCGATACATTT
641246 TATCGATACA
1 TATCGATACA
641256 GGGTGATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.32, C:0.16, G:0.11, T:0.40
Consensus pattern (26 bp):
TATCGATACATTGTATCGATACATTT
Found at i:643696 original size:20 final size:20
Alignment explanation
Indices: 643673--643725 Score: 106
Period size: 20 Copynumber: 2.6 Consensus size: 20
643663 ACAATTCAAA
643673 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
643693 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
643713 GTATCGATACATG
1 GTATCGATACATG
643726 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:646706 original size:13 final size:13
Alignment explanation
Indices: 646688--646712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
646678 ACAACATTCC
646688 TTGTATCGATACA
1 TTGTATCGATACA
646701 TTGTATCGATAC
1 TTGTATCGATAC
646713 CTGGGTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.16, G:0.16, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:649310 original size:33 final size:32
Alignment explanation
Indices: 649268--649332 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
649258 CACACCCAGA
* * *
649268 TGTATCGATACATTATGCTTTGTATTGATACAT
1 TGTATCGATACATGAT-CATTGTATAGATACAT
649301 TGTATCGATACATGATCATTGTATAGATACAT
1 TGTATCGATACATGATCATTGTATAGATACAT
649333 GGACAATTGT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.12, G:0.15, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATGATCATTGTATAGATACAT
Found at i:649316 original size:20 final size:20
Alignment explanation
Indices: 649293--649354 Score: 83
Period size: 20 Copynumber: 3.1 Consensus size: 20
649283 TGCTTTGTAT
649293 TGATACATTGTATCGATACA
1 TGATACATTGTATCGATACA
*
649313 TGAT-CATTGTATAGATACA
1 TGATACATTGTATCGATACA
*
649332 TG-GACAATTGTATCGATACA
1 TGATAC-ATTGTATCGATACA
649352 TGA
1 TGA
649355 AACTGGCAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
19 17 0.47
20 19 0.53
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (20 bp):
TGATACATTGTATCGATACA
Found at i:649424 original size:33 final size:33
Alignment explanation
Indices: 649382--649450 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
649372 CTACCACTAT
*
649382 TTGTATCGATACATGGT-ACATTATATCGATACA
1 TTGTATCGATACATGATGA-ATTATATCGATACA
* *
649415 TTGTATCGATGCATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTATATCGATACA
649448 TTG
1 TTG
649451 CTTGTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTATATCGATACA
Found at i:656444 original size:12 final size:12
Alignment explanation
Indices: 656408--656452 Score: 53
Period size: 12 Copynumber: 4.1 Consensus size: 12
656398 GTTTGAAGCA
656408 ATGTATCGATAC
1 ATGTATCGATAC
*
656420 A-AT-TC-AT-C
1 ATGTATCGATAC
656428 ATGTATCGATAC
1 ATGTATCGATAC
656440 ATGTATCGATAC
1 ATGTATCGATAC
656452 A
1 A
656453 AAATAGTTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 8
0.73 0.05 0.22
Matches are distributed among these distances:
8 2 0.07
9 3 0.11
10 4 0.15
11 3 0.11
12 15 0.56
ACGTcount: A:0.36, C:0.18, G:0.13, T:0.33
Consensus pattern (12 bp):
ATGTATCGATAC
Found at i:670022 original size:163 final size:157
Alignment explanation
Indices: 669847--670152 Score: 373
Period size: 163 Copynumber: 1.9 Consensus size: 157
669837 TTCAAAAATG
* * **
669847 TCATTTTGTACCTTAATGGAAAA-TCGAAAATATACAAAAAGTTTTTGAAATCATTTATA-CCTC
1 TCATTTTGTACCTTAAT-GAAAACCCGAAAAGATACAAAAAGTTTTCAAAATCATTTATATCCT-
* * ** * * * * *
669910 TGCAGACCCCCATAGGAATGTGAAAGATTAAAAAATGATTAACATTTATTTTAATTATGGGAGAG
64 TACAGACACCCATAAAAATATAAAAGA-TAAAAAAT-AATAA-A--CATTTTAATTATGGG-GAA
*
669975 TTAATTTAATTTTGTTTATTTATTTTTGAAAAAAA
123 TTAATTTAATTCTGTTTATTTATTTTTGAAAAAAA
* *
670010 TCATTTTGTACCTTAATGAAAACCCGAAAAGATACGAAAAGTTTTCAAAATCTTTTATATCCTTA
1 TCATTTTGTACCTTAATGAAAACCCGAAAAGATACAAAAAGTTTTCAAAATCATTTATATCCTTA
*
670075 CAGACACCCATAAAAATATAAAAGATAAAAAATAATAAACCTTTTAATTATGGGGAATTAATTTA
66 CAGACACCCATAAAAATATAAAAGATAAAAAATAATAAACATTTTAATTATGGGGAATTAATTTA
670140 ATTCTGTTTATTT
131 ATTCTGTTTATTT
670153 GAAAAATCAT
Statistics
Matches: 124, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
157 22 0.18
158 13 0.10
160 1 0.01
161 4 0.03
162 13 0.10
163 68 0.55
164 3 0.02
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (157 bp):
TCATTTTGTACCTTAATGAAAACCCGAAAAGATACAAAAAGTTTTCAAAATCATTTATATCCTTA
CAGACACCCATAAAAATATAAAAGATAAAAAATAATAAACATTTTAATTATGGGGAATTAATTTA
ATTCTGTTTATTTATTTTTGAAAAAAA
Found at i:671051 original size:12 final size:12
Alignment explanation
Indices: 671036--671085 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
671026 TTTCTACCTA
671036 TTTTCTCTCTTT
1 TTTTCTCTCTTT
671048 TTTTCTCTCTTT
1 TTTTCTCTCTTT
*
671060 TCTT-TCTCTTT
1 TTTTCTCTCTTT
* *
671071 TTTCCTTTCTTT
1 TTTTCTCTCTTT
671083 TTT
1 TTT
671086 CAGCTGACCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
11 9 0.27
12 24 0.73
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTTCTCTCTTT
Found at i:671052 original size:23 final size:22
Alignment explanation
Indices: 671024--671074 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 22
671014 TTGGTTATTA
671024 TTTTTCTACCTATTTTCTCTCT-T
1 TTTTTCT--CTATTTTCTCTCTCT
* *
671047 TTTTTCTCTCTTTTCTTTCTCT
1 TTTTTCTCTATTTTCTCTCTCT
671069 TTTTTC
1 TTTTTC
671075 CTTTCTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 11 0.44
22 7 0.28
23 7 0.28
ACGTcount: A:0.04, C:0.25, G:0.00, T:0.71
Consensus pattern (22 bp):
TTTTTCTCTATTTTCTCTCTCT
Found at i:671738 original size:159 final size:159
Alignment explanation
Indices: 671572--672283 Score: 728
Period size: 159 Copynumber: 4.4 Consensus size: 159
671562 AAAAAATCTG
* * * * *
671572 AAACTCATGAAAATAAATTAAATTTTCAAAACTGAATTAATATGAATTAAATAATAATATTTTAT
1 AAACTCATGGAAATGAATTAAATTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGAT
* *
671637 GATTTTTAAAAATCAAAAA-AAGAAAAATACCCTCAAAAAAATTACAGAGTAGAAAACTCTGTAT
66 GAATTTTAAAAATCAAAAACAAGAAAAAT-CCCTCAAAAAAATTACAGAGTAGAAAACTCCGTAT
671701 TTCCAAAAACA-TTCAAGGAAAAAAATTCAA
130 TTCCAAAAACATTTCAAGG-AAAAAATTCAA
* ** *
671731 AAACTCATGGAAACGAATTATCTTTTAAAAACTGATTTAATATGAATTCAATAATAATATTTGAT
1 AAACTCATGGAAATGAATTAAATTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGAT
* * * *
671796 GAATTTTAAAAATCAAAAACCAAGAAAATTCTCCCTGAAAAAAATTACGGAGTGGAAAACTCCGT
66 GAATTTTAAAAATCAAAAA-CAAGAAAA--ATCCCTCAAAAAAATTACAGAGTAGAAAACTCCGT
* * *
671861 GTTTCAAAAAAAAGGAATTTCAAGGAAAAAATTCAA
128 ATTTC--CAAAAA--CATTTCAAGGAAAAAATTCAA
* * *
671897 ATATTCATGGAAATGAA-TAAATTTTTAAAAATTGATTTAATATGAATTAAATAATAATATTTGA
1 AAACTCATGGAAATGAATTAAA-TTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGA
* *
671961 TGAATTTTAAAAAT-AAAAACCAAG-AAAACCCCT-AAAAAAATTACAGTA-TAAAAAACTCCGT
65 TGAATTTTAAAAATCAAAAA-CAAGAAAAATCCCTCAAAAAAATTACAG-AGTAGAAAACTCCGT
* *
672022 ATTTCGAAAAAAGAGAATTTCGAA-G-AAAAATTCAA
128 ATTTC--CAAAA-A-CATTTC-AAGGAAAAAATTCAA
* * * *
672057 AAACTCATGGAAATTAATTAATTTTTAAAAGCTGATTTAA-ATGAATTAAATAATAATATTTAAT
1 AAACTCATGGAAATGAATTAAATTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGAT
* * * * * *
672121 AAATTTTAAAAATTAAAAACAAAAAAAATCCTCCCAAAAAAATTACAGAGTTGAAAACTTCGTAT
66 GAATTTTAAAAATCAAAAACAAGAAAAATCC-CTCAAAAAAATTACAGAGTAGAAAACTCCGTAT
* **
672186 TT-CAAAAACAGGAAAATTTTAAGGAAAAAATAAAA
130 TTCCAAAAAC------ATTTCAAGGAAAAAATTCAA
* * * * *
672221 AAACTCATGAAAATGAA-TGAATCTTTGAAAACTGATTTAATATGAACTAAATAATAGTATTTG
1 AAACTCATGGAAATGAATTAAAT-TTTAAAAACTGATTTAATATGAATTAAATAATAATATTTG
672284 CAAAAGCTCA
Statistics
Matches: 464, Mismatches: 60, Indels: 52
0.81 0.10 0.09
Matches are distributed among these distances:
158 1 0.00
159 116 0.25
160 51 0.11
161 53 0.11
162 70 0.15
163 9 0.02
164 46 0.10
165 31 0.07
166 80 0.17
167 7 0.02
ACGTcount: A:0.52, C:0.10, G:0.09, T:0.29
Consensus pattern (159 bp):
AAACTCATGGAAATGAATTAAATTTTAAAAACTGATTTAATATGAATTAAATAATAATATTTGAT
GAATTTTAAAAATCAAAAACAAGAAAAATCCCTCAAAAAAATTACAGAGTAGAAAACTCCGTATT
TCCAAAAACATTTCAAGGAAAAAATTCAA
Found at i:671957 original size:325 final size:318
Alignment explanation
Indices: 671494--672283 Score: 910
Period size: 325 Copynumber: 2.4 Consensus size: 318
671484 TTAAACCAAC
* * *
671494 AAAAATCCTCTCAAAAAAATTACGGAGTAGAAAATTCAGTTTCTCGAAAAAAAAGGAATTTCAAA
1 AAAAATCCTCCCAAAAAAATTACGGAGTAGAAAACTCCGTTT-TC-AAAAAAAAGGAATTTC-AA
* * * * * *
671559 GTAAAAAAATCTGAAACTCATGAAAATAAATTAAA-TTTTCAAAACTGAATTAATATGAATTAAA
63 GGAAAAAATTC-AAAACTCATGAAAATGAA-TAAATTTTTAAAAACTGATTTAATATGAATTAAA
* *
671623 TAATAATATTTTATGATTTTTAAAAATCAAAAA-AAGAAAAATACCCTCAAAAAAATTACAG-AG
126 TAATAATATTTGATGAATTTTAAAAAT-AAAAACAAG-AAAA-ACCCT-AAAAAAATTACAGTA-
* * ** *
671686 TAGAAAACTCTGTATTTCCAAAAACATTCAA-GGAA-AAAAATTCAAAAACTCATGGAAACGAAT
186 TAAAAAACTCCGTATTTCCAAAAA-AGACAATCGAAGAAAAATTCAAAAACTCATGGAAACGAAT
* * *
671749 T-ATCTTTTAAAAACTGATTTAATATGAATTCAATAATAATATTTGATGAATTTTAAAAATCAAA
250 TAAT-TTTTAAAAACTGATTTAA-ATGAATTAAATAATAATATTTAATAAATTTTAAAAATCAAA
*
671813 AACCAA
313 AACAAA
* * *
671819 GAAAATTCTCCCTGAAAAAAATTACGGAGTGGAAAACTCCGTGTTTCAAAAAAAAGGAATTTCAA
1 AAAAATCCTCCC--AAAAAAATTACGGAGTAGAAAACTCCGT-TTTCAAAAAAAAGGAATTTCAA
* * *
671884 GGAAAAAATTCAAATATTCATGGAAATGAATAAATTTTTAAAAATTGATTTAATATGAATTAAAT
63 GGAAAAAATTCAAA-ACTCATGAAAATGAATAAATTTTTAAAAACTGATTTAATATGAATTAAAT
*
671949 AATAATATTTGATGAATTTTAAAAATAAAAACCAAGAAAACCCCTAAAAAAATTACAGTATAAAA
127 AATAATATTTGATGAATTTTAAAAATAAAAA-CAAGAAAAACCCTAAAAAAATTACAGTATAAAA
* * **
672014 AACTCCGTATTTCGAAAAAAGAGAATTTCGAAGAAAAATTCAAAAACTCATGGAAATTAATTAAT
191 AACTCCGTATTTCCAAAAAAGACAA--TCGAAGAAAAATTCAAAAACTCATGGAAACGAATTAAT
* *
672079 TTTTAAAAGCTGATTTAAATGAATTAAATAATAATATTTAATAAATTTTAAAAATTAAAAACAAA
254 TTTTAAAAACTGATTTAAATGAATTAAATAATAATATTTAATAAATTTTAAAAATCAAAAACAAA
* * * * *
672144 AAAAATCCTCCCAAAAAAATTACAGAGTTGAAAACTTCGTATTTC-AAAAACAGGAAAATTTTAA
1 AAAAATCCTCCCAAAAAAATTACGGAGTAGAAAACTCCGT-TTTCAAAAAAAAGG--AATTTCAA
** * * * *
672208 GGAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGAAAACTGATTTAATATGAACTAAAT
63 GGAAAAAAT-TCAAAACTCATGAAAATGAATAAATTTTTAAAAACTGATTTAATATGAATTAAAT
*
672273 AATAGTATTTG
127 AATAATATTTG
672284 CAAAAGCTCA
Statistics
Matches: 398, Mismatches: 51, Indels: 33
0.83 0.11 0.07
Matches are distributed among these distances:
322 11 0.03
323 63 0.16
324 85 0.21
325 145 0.36
326 63 0.16
327 29 0.07
328 2 0.01
ACGTcount: A:0.52, C:0.10, G:0.10, T:0.28
Consensus pattern (318 bp):
AAAAATCCTCCCAAAAAAATTACGGAGTAGAAAACTCCGTTTTCAAAAAAAAGGAATTTCAAGGA
AAAAATTCAAAACTCATGAAAATGAATAAATTTTTAAAAACTGATTTAATATGAATTAAATAATA
ATATTTGATGAATTTTAAAAATAAAAACAAGAAAAACCCTAAAAAAATTACAGTATAAAAAACTC
CGTATTTCCAAAAAAGACAATCGAAGAAAAATTCAAAAACTCATGGAAACGAATTAATTTTTAAA
AACTGATTTAAATGAATTAAATAATAATATTTAATAAATTTTAAAAATCAAAAACAAA
Found at i:673162 original size:13 final size:13
Alignment explanation
Indices: 673144--673169 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
673134 CATTTTTCTG
673144 TGTATCGATACAT
1 TGTATCGATACAT
673157 TGTATCGATACAT
1 TGTATCGATACAT
673170 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:673181 original size:33 final size:33
Alignment explanation
Indices: 673124--673190 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
673114 GCCAAGGAAA
*** *
673124 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCAATACAT
*
673157 TGTATCGATACATGGATCTTTGTATCAATACAT
1 TGTATCGATACATGGATCTGTGTATCAATACAT
673190 T
1 T
673191 TGGAAATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCAATACAT
Found at i:675666 original size:27 final size:28
Alignment explanation
Indices: 675636--675710 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
675626 TTTCTTCACA
675636 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
* *
675663 ATCGGGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
675691 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
675711 CACTTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 23 0.56
28 18 0.44
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:675909 original size:52 final size:51
Alignment explanation
Indices: 675530--675915 Score: 260
Period size: 52 Copynumber: 7.4 Consensus size: 51
675520 AATTCTCCAC
* * * *
675530 AATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAA-TTTTCTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-AT
* * ** *
675581 AATCGGGGATACTCTAACTCCGATTTTATTTAAAAAAAACACCAATTTCTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTT--CCAAAACACCAATTT-TTCAT
* * ** * * **
675635 AATCGGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCTCGTT-AT
1 AATCGGGGATACTCCAACCCCGATTTTAT-TTC--CAAAACACCAA--TTTTTCAT
* * * * ***
675688 -TTCCGAGGGGATACTCCAACCCCCACTTTATTTCCAAAATATTGATTTTTCAT
1 AAT-C--GGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCAT
* * * *
675741 AATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTT-CAT
* * * *
675793 AATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-AT
* * *
675845 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAACACCAATTTTTCAT
** *
675897 AATCAAGAATACTCCAACC
1 AATCGGGGATACTCCAACC
675916 TCGTTATTTC
Statistics
Matches: 258, Mismatches: 58, Indels: 37
0.73 0.16 0.10
Matches are distributed among these distances:
51 66 0.26
52 100 0.39
53 36 0.14
54 29 0.11
55 21 0.08
56 2 0.01
57 4 0.02
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (51 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCAT
Found at i:675937 original size:28 final size:28
Alignment explanation
Indices: 675905--675974 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
675895 ACAATCAAGA
* * **
675905 ATACTCCAACCTCGTTATTTCATCGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
*
675933 ATACTCCAACCCCGTTACTTCCGAGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
675961 ATACTCCAACCCCG
1 ATACTCCAACCCCG
675975 GCTTTATTCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.23, C:0.36, G:0.17, T:0.24
Consensus pattern (28 bp):
ATACTCCAACCCCGTTACTTCAGAGGGG
Found at i:675997 original size:263 final size:263
Alignment explanation
Indices: 675525--676025 Score: 772
Period size: 263 Copynumber: 1.9 Consensus size: 263
675515 TTCTCAATTC
* * *
675525 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* ** *
675590 TACTCTAACTCCGATTTTATTTAAAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTAAAAAAAACACCAATTTCTTCACAATCAAGAATACTCCAACCC
* *
675655 CGTTAATCATCGGGGATACTCCAACCTCGTTATTTCCGAGGGGATACTCCAACCCCCACTTTATT
131 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCACTTTATT
* *
675720 TCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
196 CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
675785 TTT
261 TTT
* * *
675788 TCCATAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGG
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGG
** *
675853 ATACTCCAACTCCGATTTTATTT-CCAAAAATACCAATTT-TTCACAATCAAGAATACTCCAACC
65 ATACTCCAACTCCGATTTTATTTAAAAAAAACACCAATTTCTTCACAATCAAGAATACTCCAACC
* * **
675916 TCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTA
130 CCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCACTTTA
*
675981 TTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACCCCG
194 TTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCG
676026 TTATTTTTGA
Statistics
Matches: 214, Mismatches: 22, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
262 26 0.12
263 155 0.72
264 33 0.15
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (263 bp):
TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTAAAAAAAACACCAATTTCTTCACAATCAAGAATACTCCAACCC
CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:676048 original size:28 final size:29
Alignment explanation
Indices: 676008--676062 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
675998 TCTCATAATT
676008 GGGGATACTCCAACCCCG-TTATTTTTGA
1 GGGGATACTCCAACCCCGATTATTTTTGA
* *
676036 GGGGATACTCCAATCCCGATTTTTTTT
1 GGGGATACTCCAACCCCGATTATTTTT
676063 TCTAATCATC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.36
Consensus pattern (29 bp):
GGGGATACTCCAACCCCGATTATTTTTGA
Found at i:676078 original size:79 final size:79
Alignment explanation
Indices: 675928--676132 Score: 225
Period size: 79 Copynumber: 2.6 Consensus size: 79
675918 GTTATTTCAT
* * *
675928 CGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATTCCCAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
** * *
675993 TGATTTCTCATAAT
66 CAATTTCTCACAAC
* * * * * ** *
676007 TGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAATCCCGATTTTTTTTTC-TAATCA
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAAT-A
676071 TCAATTTCTCACAAC
65 TCAATTTCTCACAAC
* *
676086 CGGGGATACTCCAGCCCCGTTATTTTC-AGGGGAACACTCCAACCCCG
1 CGGGGATACTCCAACCCCGTTATTTTCGAGGGG-ATACTCCAACCCCG
676133 TTATTATCTC
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
78 8 0.08
79 96 0.92
ACGTcount: A:0.24, C:0.30, G:0.17, T:0.29
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCCAAAATAT
CAATTTCTCACAAC
Found at i:689393 original size:29 final size:28
Alignment explanation
Indices: 689360--689444 Score: 70
Period size: 29 Copynumber: 3.0 Consensus size: 28
689350 GATGCTTTTT
689360 CCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTC-AAGCCCACACAAGTTGGTGGCA
* * * *
689389 CCTTTC-AGTCCC-CA-AAG-AGCATGACC
1 CCTTTCAAG-CCCACACAAGTTG-GTGGCA
689415 CCTTTCGAAGCCCACACAAGTTGGTGGCA
1 CCTTTC-AAGCCCACACAAGTTGGTGGCA
689444 C
1 C
689445 TTCCCAGTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 14
0.65 0.13 0.22
Matches are distributed among these distances:
25 1 0.02
26 12 0.29
27 7 0.17
28 7 0.17
29 13 0.32
30 1 0.02
ACGTcount: A:0.26, C:0.34, G:0.20, T:0.20
Consensus pattern (28 bp):
CCTTTCAAGCCCACACAAGTTGGTGGCA
Found at i:689444 original size:55 final size:54
Alignment explanation
Indices: 689360--690165 Score: 757
Period size: 55 Copynumber: 14.0 Consensus size: 54
689350 GATGCTTTTT
* * *
689360 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCATGACC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACC
** *
689415 CCTTTCGAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACACCTTC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TCAGTCCTCAAAGAGCAGG--A-C--C
* * **
689475 TCCTTTTAAAGCCCACACAAGTTGTTGGCATTTTCCAGTCCTCAAAGAGTGGGACGC
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGAC-C
* * *
689532 CTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTTAAAGAGCGGGATGCC
1 C----CTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGA--CC
* * * *
689592 TTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCTTTT
1 ---CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGA--C---C
* * * *
689654 TCTTTTCAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACC
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACC
* *
689710 CCTTTCAAAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGATGCCTTC
1 CCTTT--TAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGA---C--C
* * *
689771 TCCTCTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACG
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGGACC
* *
689827 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGTGCAGGATGCCTTC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGGA---C--C
* **
689887 TCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGATG
1 -CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGGACC
* *
689943 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCGGGACGC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TCAGTCCTCAAAGAGCAGGAC-C
* * *
689999 TTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGCCCTCAAAGAGCAGGACA
1 ----CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACC
* * **
690058 CCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATG
1 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACC
* * *
690113 CCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
1 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTCAGTCCTCAAAGAGCAGGA
690166 TACACTTTAT
Statistics
Matches: 644, Mismatches: 62, Indels: 90
0.81 0.08 0.11
Matches are distributed among these distances:
54 4 0.01
55 239 0.37
56 27 0.04
57 24 0.04
58 4 0.01
59 77 0.12
60 126 0.20
61 139 0.22
62 4 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (54 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACC
Found at i:689618 original size:116 final size:115
Alignment explanation
Indices: 689361--690165 Score: 832
Period size: 116 Copynumber: 7.0 Consensus size: 115
689351 ATGCTTTTTC
* * * * * *
689361 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCATGA--CC---CCTTTC
1 CTTTTAAAGCCCACACAAGTT-GTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTT
* *
689421 GAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACACCTTCT
65 AAAGCCCACACAAGTTGGTGGCACCTT--CAGTCCTCAAAGAGCAGGAC-GC--CT
** ** *
689476 CCTTTTAAAGCCCACACAAGTTGTTGGCATTTTCCAGTCCTCAAAGAGTGGGACGCCTTTTCTTT
1 -CTTTTAAAGCCCACACAAGTTG-TGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCTTT
* * *
689541 TAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTTAAAGAGCGGGATGCCTTTT
64 TAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCC---T
* *
689596 CTTTTAAAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGATGCTTTTTCTTTT
1 CTTTTAAAGCCCACACAAGTT-GTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTT
* * *
689660 CAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGAC-CC-
65 -AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCT
* *
689711 CTTTCAAAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGATGCCTTCTCCT
1 CTTT--TAAAGCCCACACAAGTT-GTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTT-TTCT
*
689775 CTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGACG-C-
62 TTTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGACGCCT
* *
689828 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGTGCAGGATGCCTTCTCCTT
1 CTTTTAAAGCCCACACAAGTT-GTGGCACCTTCC-AGTCCTCAAAGAGCAGGATGCCTT-TTCTT
*
689892 TTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGATG-C-
63 TTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGACGCCT
* * *
689944 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCGGGACGCTTTTTCTTT
1 CTTTTAAAGCCCACACAAGTT-GTGGCACCTT-CCAGTCCTCAAAGAGCAGGATGCCTTTTCTTT
* *
690008 TAAAGCCCACACAAGTTGGTGGCACCTTTCAGCCCTCAAAGAGCAGGACACCT
64 TAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGACGCCT
* *
690061 C--TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATGCC-TTTC----
1 CTTTTAAAGCCCACACAAGTT-GTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTT
* * *
690119 AAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
65 AAAGCCCACACAAGTTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGA
690166 TACACTTTAT
Statistics
Matches: 604, Mismatches: 57, Indels: 62
0.84 0.08 0.09
Matches are distributed among these distances:
110 42 0.07
114 4 0.01
115 125 0.21
116 182 0.30
117 97 0.16
118 35 0.06
119 54 0.09
120 36 0.06
121 26 0.04
122 3 0.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (115 bp):
CTTTTAAAGCCCACACAAGTTGTGGCACCTTCCAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTA
AAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGACGCCT
Found at i:689726 original size:176 final size:174
Alignment explanation
Indices: 689361--690165 Score: 879
Period size: 176 Copynumber: 4.6 Consensus size: 174
689351 ATGCTTTTTC
* * **
689361 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCATGA--CC--CCTTTCG
1 CTTT-AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCCTTCCTTTTA
* * *
689422 AAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACACCTTCTCCTTTTAAAGC
64 AAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGAC-GCTTTTTCTTTTAAAGC
* * ** *
689487 CCACACAAGTTGTTGGCA-TTTTCCAGTCCTCAAAGAGTGGGACGCCTTTT
127 CCACACAAGTTGGTGGCACTTTT--AGTCCCCAAAGAGCAGGAC-CCCTTT
* * *
689537 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTTAAAGAGCGGGATGCCTTTTCTTTTA
1 C-TTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCC-TTCCTTTTA
* *
689602 AAGCCCACCCAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGC
64 AAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACGCTTTTTCTTTT-AAAGC
*
689666 CTACACAAGTTGGTGGCACCTTTTAGTCCCCAAAGAGCAGGACCCCTTT
127 CCACACAAGTTGGTGGCA-CTTTTAGTCCCCAAAGAGCAGGACCCCTTT
** *
689715 C-AAAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGATGCCTTCTCCTCTT
1 CTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGGATGCC-T-TCCTTTT
689778 AAAGCCCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGAGCAGGACGC-----CTTTTAAAGC
63 AAAGCCCACACAAGTTGGTGGCACTTCC-AGTCCTCAAAGAGCAGGACGCTTTTTCTTTTAAAGC
* * * **
689838 CCACACAAGTTGGTGGCACTTCCTAGTCCTCAAAGTGCAGGATGCCTTCT
127 CCACACAAGTTGGTGGCACTT-TTAGTCCCCAAAGAGCAGGACCCCTT-T
689888 CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGAGCAGGATG----CCTTT
1 -C-TTTAAAGCCCACACAAGTTGGTGGCACCTT-C-AGTCCTCAAAGAGCAGGATGCCTTCCTTT
*
689948 TAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCGGGACGCTTTTTCTTTTAAAG
62 TAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTAAAG
* *
690013 CCCACACAAGTTGGTGGCACCTTTCAG-CCCTCAAAGAGCAGGACACC--T
126 CCCACACAAGTTGGTGGCA-CTTTTAGTCCC-CAAAGAGCAGGACCCCTTT
* *
690061 C-TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGTAGGATG----CCTTTCAA
1 CTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCAGGATGCCTTCCTTTTAA
* **
690121 AGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
65 AGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGAGCAGGA
690166 TACACTTTAT
Statistics
Matches: 550, Mismatches: 48, Indels: 68
0.83 0.07 0.10
Matches are distributed among these distances:
170 89 0.16
171 58 0.11
172 48 0.09
173 7 0.01
174 1 0.00
175 22 0.04
176 146 0.27
177 56 0.10
178 35 0.06
179 56 0.10
180 25 0.05
181 7 0.01
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.25
Consensus pattern (174 bp):
CTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGTCCTCAAAGAGCAGGATGCCTTCCTTTTAAA
GCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACGCTTTTTCTTTTAAAGCCCAC
ACAAGTTGGTGGCACTTTTAGTCCCCAAAGAGCAGGACCCCTTT
Found at i:691024 original size:19 final size:19
Alignment explanation
Indices: 691000--691067 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
690990 AATTCAACAA
691000 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
691019 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
*
691034 --TGTATCGATACAGAAGT
1 TTTGTATCGATACATAAGT
*
691051 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
691068 TTAGCTACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 27 0.64
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.37
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:691039 original size:13 final size:13
Alignment explanation
Indices: 691021--691045 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
691011 ACATAAGTTT
691021 TGTATCGATACAA
1 TGTATCGATACAA
691034 TGTATCGATACA
1 TGTATCGATACA
691046 GAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:691043 original size:32 final size:32
Alignment explanation
Indices: 691002--691064 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
690992 TTCAACAATT
* *
691002 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACAGAAGTATTGTATCGATACAA
691034 TGTATCGATACAGAAGTATTGTATCGATACA
1 TGTATCGATACAGAAGTATTGTATCGATACA
691065 TAATTAGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAGAAGTATTGTATCGATACAA
Found at i:699005 original size:27 final size:28
Alignment explanation
Indices: 698975--699049 Score: 98
Period size: 27 Copynumber: 2.7 Consensus size: 28
698965 TTTCTTCACA
698975 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
* *
699002 ATCGGGGATACTCCAACCCTGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
699030 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
699050 CACTTTATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 23 0.56
28 18 0.44
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:699100 original size:51 final size:52
Alignment explanation
Indices: 699033--699150 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 52
699023 TTATTTCCGA
* * * * *
699033 GGGGATACTCCAACCCCCACTTTATTTCCAAAATATTGATTTTT-CATAATC
1 GGGGATACTCCAACCCCCACTTTATTGCCAAAACACTAATTTTTCCACAATC
*** *
699084 GGGGATACTCCAACCCCGGTTTTATTGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCCACTTTATTGCCAAAACACTAATTTTTCCACAATC
*
699136 GGTGATACTCCAACC
1 GGGGATACTCCAACC
699151 TTGGTTTTAT
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
51 36 0.64
52 20 0.36
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (52 bp):
GGGGATACTCCAACCCCCACTTTATTGCCAAAACACTAATTTTTCCACAATC
Found at i:699157 original size:52 final size:52
Alignment explanation
Indices: 699071--699233 Score: 163
Period size: 52 Copynumber: 3.1 Consensus size: 52
699061 CAAAATATTG
*
699071 ATTTTT-CATAATCGGGGATACTCCAACCCCGGTTTTATTGCT-AAAACACTA
1 ATTTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATT-CTCAAAACACCA
* * ** *
699122 ATTTTTCCACAATCGGTGATACTCCAACCTTGGTTTTATTTTCAAAACACCA
1 ATTTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTCTCAAAACACCA
* * * * *
699174 A-TTTTCCTTTAATCGGGGATACTCCAACTCCGATATTATT-TCCAAAAATACCA
1 ATTTTTCC-ATAATCGGGGATACTCCAACCCCGGTTTTATTCT-C-AAAACACCA
699227 ATTTTTC
1 ATTTTTC
699234 ACAATCAAGA
Statistics
Matches: 91, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
51 14 0.15
52 63 0.69
53 9 0.10
54 5 0.05
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.36
Consensus pattern (52 bp):
ATTTTTCCATAATCGGGGATACTCCAACCCCGGTTTTATTCTCAAAACACCA
Found at i:699276 original size:28 final size:28
Alignment explanation
Indices: 699244--699311 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
699234 ACAATCAAGA
** * **
699244 ATACTCCAACCTTGTTATTTCATCGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
*
699272 ATACTCCAACCCCGTTACTTCCGAGGGG
1 ATACTCCAACCCCGTTACTTCAGAGGGG
699300 ATACTCCAACCC
1 ATACTCCAACCC
699312 GGCTTTATTC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.24, C:0.34, G:0.16, T:0.26
Consensus pattern (28 bp):
ATACTCCAACCCCGTTACTTCAGAGGGG
Found at i:700578 original size:32 final size:33
Alignment explanation
Indices: 700515--700582 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
700505 CGTTACAAGC
* *
700515 CAATGTGTCGATACATTTGGTCATGTATCGATA
1 CAATGTATCAATACATTTGGTCATGTATCGATA
700548 CAATGTATCAATACATCTT-GT-ATGTATCGATA
1 CAATGTATCAATACAT-TTGGTCATGTATCGATA
700580 CAA
1 CAA
700583 ACAGTTAAGG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 14 0.44
33 16 0.50
34 2 0.06
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (33 bp):
CAATGTATCAATACATTTGGTCATGTATCGATA
Found at i:700669 original size:13 final size:13
Alignment explanation
Indices: 700651--700675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
700641 TACAGTGGTC
700651 ATGTATCGATACA
1 ATGTATCGATACA
700664 ATGTATCGATAC
1 ATGTATCGATAC
700676 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:701983 original size:78 final size:79
Alignment explanation
Indices: 701873--702078 Score: 234
Period size: 78 Copynumber: 2.6 Consensus size: 79
701863 GAGATAATAA
* * * * * * * *
701873 CGGGGTTGGAGTGTTCCCTTGAAAATAACGGGGCTAGAGTATCCCCGGTTGTGAGAAATCGAT-G
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAG
*
701937 CTTAGAAAAAAAAT
66 CTTAGAAAAAAAAC
* * *
701951 CGGGATTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAG
* * * * *
702016 TTTGGGAATAAAGC
66 CTTAGAAAAAAAAC
* *
702030 CGGGGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
702079 GAAATAACGA
Statistics
Matches: 106, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
78 53 0.50
79 53 0.50
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAG
CTTAGAAAAAAAAC
Found at i:702070 original size:28 final size:28
Alignment explanation
Indices: 702030--702101 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
702020 GGAATAAAGC
** *
702030 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
702058 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
702086 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
702102 TCGACTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:702093 original size:107 final size:110
Alignment explanation
Indices: 701951--702186 Score: 302
Period size: 108 Copynumber: 2.2 Consensus size: 110
701941 GAAAAAAAAT
* * * *
701951 CGGGATTGGAGTATCCCC--TCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT
1 CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
* * * *
702014 A-TTTTGGGAATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAA
66 ATTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
* * * ***
702058 CGGGGTTGGAGTATCCCCGAT-G-AAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGT
1 CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
*
702121 ATTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCTCGGAAATAA
66 ATTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
702166 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
702187 TGTGAAGAAA
Statistics
Matches: 111, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
107 50 0.45
108 60 0.54
109 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (110 bp):
CGGGGTTGGAGTATCCCCGATCGAAAATAACGAGGTTGGAGTATCCCCAACTATGAAAAATCAAT
ATTTTTGGAAATAAAACCGGAGTTGGAGTATCCCCTCGGAAATAA
Found at i:702235 original size:82 final size:80
Alignment explanation
Indices: 702079--702237 Score: 255
Period size: 82 Copynumber: 2.0 Consensus size: 80
702069 TATCCCCGAT
*
702079 GAAATAACGAGGTTGGAGTATCCTCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGT
1 GAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGT
*
702144 TGGAGTATCCCCTCG
66 TAGAGTATCCCCTCG
* * *
702159 GAAATAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GAAATAACGAGGTTGGAGTATCCCCGACTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGA
702224 GTTAGAGTATCCCC
64 GTTAGAGTATCCCC
702238 GATTATAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
80 31 0.43
81 8 0.11
82 33 0.46
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (80 bp):
GAAATAACGAGGTTGGAGTATCCCCGACTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGT
TAGAGTATCCCCTCG
Found at i:702266 original size:51 final size:53
Alignment explanation
Indices: 702174--702292 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 53
702164 AACGGGGTTG
* * *
702174 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
702228 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
702279 GAATATCCTCGATT
1 GAGTATCCCCGATT
702293 GTGGAGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 33 0.57
52 2 0.03
53 8 0.14
54 15 0.26
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:704669 original size:13 final size:13
Alignment explanation
Indices: 704651--704676 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
704641 ACAAAGATCC
704651 ATGTATCGATACA
1 ATGTATCGATACA
704664 ATGTATCGATACA
1 ATGTATCGATACA
704677 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:704672 original size:33 final size:33
Alignment explanation
Indices: 704630--704696 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
704620 AAAATTTCCA
***
704630 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
704663 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
704696 A
1 A
704697 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:713348 original size:19 final size:20
Alignment explanation
Indices: 713304--713355 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
713294 TTACAAGCCA
713304 ATGTATCGATACATTTGGTC
1 ATGTATCGATACATTTGGTC
713324 ATGTATCGATACATCTT-GT-
1 ATGTATCGATACAT-TTGGTC
713343 ATGTATCGATACA
1 ATGTATCGATACA
713356 AACAGTTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
19 13 0.42
20 16 0.52
21 2 0.06
ACGTcount: A:0.29, C:0.15, G:0.17, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATTTGGTC
Found at i:713443 original size:13 final size:13
Alignment explanation
Indices: 713425--713449 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
713415 TACAATGGTC
713425 ATGTATCGATACA
1 ATGTATCGATACA
713438 ATGTATCGATAC
1 ATGTATCGATAC
713450 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:731361 original size:811 final size:810
Alignment explanation
Indices: 713761--733904 Score: 39026
Period size: 810 Copynumber: 24.9 Consensus size: 810
713751 GATCATAACA
713761 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
713826 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
713891 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
*
713956 AAATATTTTGTTGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
714021 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
714086 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
714151 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
714216 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
*
714281 CAATTTCTCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
*
714346 TCATTCGCAAAGATAGTTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
586 TCATCCGCAAAGATAG-TTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
* *
714411 ATTCAACTTTTTTATCTGAGATTGGCCTTAAGATTGCACTTTTTCTTTCACATGCATGTGCAAGA
650 ATTCAACTTTTTTATTTGAGATTGGCCCT-AGATTGCACTTTTTCTTTCACATGCATGTGCAAGA
714476 AAATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTT
714 AAATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTT
714541 GAAAACTGATTTAATATGAATTAAATAATAGT
779 GAAAACTGATTTAATATGAATTAAATAATAGT
714573 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
* *
714638 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAGCTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
* **
714703 TTATCAAAACTGATTTGATGGGAAAGAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
714768 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
714833 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
714898 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
*
714963 GATAAAATTCACCAATTGACACATTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
* *
715028 TTAATTTTTTAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGC
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
*
715093 CAATTTCTCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
**
715158 TCATTTGCAAAGATAGTTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
586 TCATCCGCAAAGATAG-TTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
* * *
715223 ATTCATCTTTTTTATCTGAGATTGGCCCTAAAATTGCACTTTTTCTTTCACATGCATGTGCAAGA
650 ATTCAACTTTTTTATTTGAGATTGGCCCT-AGATTGCACTTTTTCTTTCACATGCATGTGCAAGA
715288 AAATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTT
714 AAATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTT
715353 GAAAACTGATTTAATATGAATTAAATAATAGT
779 GAAAACTGATTTAATATGAATTAAATAATAGT
715385 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
* * *
715450 ACTTCGTAATTTGAGAACGAGAGGATTTCCAAAAGAAAATCATTAGCTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
* * **
715515 TTTTCAAAACTGATTTGATGGGAAAGAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
*
715580 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTTATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
715645 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
715710 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
*
715775 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTATTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
715840 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
715905 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
*
715970 TCATCCGCAAAGATAGTTTCAAAATTTCACAGTAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
716035 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGTACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
716100 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716165 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
716195 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
716260 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
716325 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
716390 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
716455 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
716520 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
716585 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
716650 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
*
716715 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAATAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
**
716780 TCATTTGCAAAGATAGTTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAAT
586 TCATCCGCAAAGATAG-TTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
* *
716844 ACTCATCTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
650 ATTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
716909 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
716974 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
717005 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
717070 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
717135 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
717200 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
717265 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
717330 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
717395 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
717460 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
717525 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
717590 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
* *
717654 TTCATCTTTTTTATTTGAGATTGGCCCTAGATTGTACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
717719 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
717784 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
717814 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
717879 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
717944 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
718009 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
718074 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
718139 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
718204 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
718269 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
718334 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
718399 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
* *
718463 CTCATCTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
718528 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
718593 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
718623 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
718688 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
718753 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
718818 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
718883 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
718948 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
719013 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
719078 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
719143 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
719208 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
719273 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
719338 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
719403 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
719433 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
* *
719498 ACTTCGTAATTTGAAAACGAGAGGAATTCCAAAAGAAAATCATTAACT-AGAAAACCAAATGGAA
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCA-AAAACCAAATGGAA
*
719562 TTTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTA
130 TTTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTA
719627 AAAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAA
195 AAAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAA
719692 AATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATA
260 AATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATA
719757 AATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAAT
325 AATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAAT
719822 TGATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATT
390 TGATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATT
719887 CTTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGG
455 CTTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGG
719952 TCAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATG-AAAATTTGACCGTGAT
520 TCAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGAT
720016 ATCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
585 ATCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAAT
*
720081 ATTCAACTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
650 ATTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
720146 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
720211 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
720242 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
720307 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
720372 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
720437 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
720502 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
720567 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
720632 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
720697 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
720762 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
720827 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
* *
720892 TTCATCTTTTTTATTTGAGATTGGCCCTAGATTGTACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
720957 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAAT-AAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
721021 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
721051 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
* *
721116 ACTTCGTAATTTGAAAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
721181 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
721246 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
721311 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
721376 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
721441 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
721506 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
721571 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
721636 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
* *
721701 TTCAACTTTTTTATCTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
721766 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAAT-AAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
721830 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
721860 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
721925 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
721990 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
722055 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
722120 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
722185 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
722250 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
722315 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
722380 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
722445 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
722510 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
722575 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
722640 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
722670 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
722735 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
722800 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
722865 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
722930 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
722995 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
723060 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
723125 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
* *
723190 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTCAAAATGAAAAGTTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
723255 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
723320 TTCATCTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
723385 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
723450 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
723480 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
723545 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
723610 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
723675 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
723740 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
723805 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
723870 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
723935 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
*
724000 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAATAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
*
724065 TCATTCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
* *
724129 CTCATCTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
724194 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
724259 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
724289 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
724354 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
724419 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
724484 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
724549 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
724614 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
724679 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
724744 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
724809 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
724874 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
724939 TTCAACTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
* *
725004 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAAT-AAAAAATTCAGGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
725068 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
725098 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
725163 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
725228 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
725293 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
725358 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
725423 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
725488 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
725553 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
725618 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
725683 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
725747 TTCAATCTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
651 TTCAA-CTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
725812 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
725877 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
725908 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
725973 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
726038 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
726103 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
726168 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
726233 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
726298 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
726363 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
726428 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
726493 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
726558 TTCAACTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
726623 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
726688 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
726718 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
726783 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
726848 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
726913 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
726978 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
727043 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
727108 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
727173 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
727238 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
727303 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
727367 TTCAACTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
727432 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
727497 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
727527 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
727592 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
727657 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
727722 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
727787 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
727852 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
727917 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
727982 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
728047 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
728112 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
728177 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
728242 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
728307 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
728337 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
728402 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
728467 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
728532 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
728597 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
*
728662 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTTATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
728727 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
728792 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
728857 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
**
728922 TCATTTGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTT-TGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
728985 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
729050 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
729115 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
729145 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
729210 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
729275 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
729340 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
729405 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
729470 ATTAAACGAAAATAAAATT-AAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
729534 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
729599 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
729664 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
729729 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
729794 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
729859 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
729924 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
729954 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
730019 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
730084 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
730149 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
730214 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
*
730279 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTTATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
730344 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
730409 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
730474 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
730539 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
730604 TTCAATCTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
651 TTCAA-CTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
730669 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
730734 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
730765 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
730830 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
730895 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
730960 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
731025 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
731090 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
731155 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
731220 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
731285 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
*
731350 TCATTCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAA-TTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
731414 TTCAATCTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
651 TTCAA-CTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
731479 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
731544 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
731575 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
731640 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
731705 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
731770 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
731835 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
731900 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
731965 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
732030 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
732095 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
732160 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
*
732225 TTCAATCTTTTTTATTTGAGATTGGCCCTAAATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
651 TTCAA-CTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAA
* *
732290 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAAT-AAAAAATTCAGGAAAATGAATGAATCTTTG
715 AATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTG
732354 AAAACTGATTTAATATGAATTAAATAATAGT
780 AAAACTGATTTAATATGAATTAAATAATAGT
732385 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
732450 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
732515 TTATGAAAACTGATTTGATGGTAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
732580 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
732645 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
732710 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
732775 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
391 GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
732840 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
456 TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
732905 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
521 CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
732970 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
586 TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
733035 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
651 TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
733100 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
716 ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
733165 AAACTGATTTAATATGAATTAAATAATAGT
781 AAACTGATTTAATATGAATTAAATAATAGT
733195 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
1 ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
*
733260 ACTTCGTAATTTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
66 ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
*
733325 TTATCAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
131 TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
733390 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
196 AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
733455 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
261 ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
733520 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
326 ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
*
733585 GATAAAATTCACCAATTGACACAC-TTTGATAGAAAATGCTAATAGATATTTTCTTTTGAATATT
391 GATAAAATTCACCAATTGACAC-CTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATT
* * *
733649 CTTAATTTTTCAGGGCTTGTATTAGCATAAAAACCTCGTAGGTGTTAGTAAAAAAAATATGACGG
455 CTTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGG
* * * *
733714 TCAATTTCTCAAGTTTTTCAGAAAAATCTCAAAACATTCTAAAAAATAAAAAATTTGACCGTGAT
520 TCAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGAT
* * *
733779 ATCATCCGTAGATATAGTTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAA
585 ATCATCCGCAAAGATAG-TTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAA
* * * *
733844 TATTCATCTTTTTTATCTGAGATTGGCCCCAAGACTGCACTTTTTCTTTCACATGCATGTG
649 TATTCAACTTTTTTATTTGAGATTGG-CCCTAGATTGCACTTTTTCTTTCACATGCATGTG
733905 TGGTCATCTA
Statistics
Matches: 19160, Mismatches: 152, Indels: 40
0.99 0.01 0.00
Matches are distributed among these distances:
807 288 0.02
808 533 0.03
809 7058 0.37
810 8761 0.46
811 1098 0.06
812 1422 0.07
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (810 bp):
ATTTGATAAATTTTTAAAATTTTAAACCCATGAAAATCCTCATGAAAAAAATTACTAGAAAGAAA
ACTTCGTAATGTGAGAACGAGAGGAATTCCAAAAGAAAATCATTAACTCAAAAACCAAATGGAAT
TTATGAAAACTGATTTGATGGGAATTAAATGATAATATTTGAATAATTTTGATGTTTGAAACTAA
AAATATTTTGTCGAAAATTTTACGAGCAAAGAATTTCATTCAGAGTGATGCAAAATGGATTCAAA
ATCACATATTGGATGAAATATTAACTTCTAAATTAAAGAAAATAAATTTATACAATTTATGATAA
ATTAAACGAAAATAAAATTAAAAAAATATGGTATTCATCATATCGTGAAAAATTCAAAATTAATT
GATAAAATTCACCAATTGACACCTTTTGGTAGAAAATGCTAATAGATATTTTCTTTTGAATATTC
TTAATTTTTCAGGGCATGTATTAGCATAAAAACCTCATAGGTGTTAGTAAGAAAAATATGACGGT
CAATTTATCGAGTTTTTCAGAAAAATCTCAAAACATTCTTAAAAATGAAAAATTTGACCGTGATA
TCATCCGCAAAGATAGTTTCAAAATTTCACAATAAGATATTTAAAAATTAATTTTTTTCTGAATA
TTCAACTTTTTTATTTGAGATTGGCCCTAGATTGCACTTTTTCTTTCACATGCATGTGCAAGAAA
ATTTGAAAACGGGAAAATTTTAAGGAAAAAAATAAAAAAACTCATGAAAATGAATGAATCTTTGA
AAACTGATTTAATATGAATTAAATAATAGT
Found at i:734331 original size:20 final size:20
Alignment explanation
Indices: 734298--734349 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
734288 AATTACATAT
* *
734298 TATATCAGTGCAAT-TGCAAA
1 TATATCAATACAATATGC-AA
*
734318 TATATCAATACAATATGCAT
1 TATATCAATACAATATGCAA
*
734338 TATATTAATACA
1 TATATCAATACA
734350 TATTTGATTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 24 0.89
21 3 0.11
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (20 bp):
TATATCAATACAATATGCAA
Found at i:736246 original size:139 final size:138
Alignment explanation
Indices: 735927--736326 Score: 570
Period size: 139 Copynumber: 2.9 Consensus size: 138
735917 CGAAAATCTT
* * * *
735927 ATTTCATACCTTAATGGAGAATCGAAAGGATAGGAAAAGTTTTGAAA-ATTTCTATACCCCTACA
1 ATTTCATACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTT-AAAGATTTCTATACCCCTACG
*
735991 AAAAGCCATAGGAATATTAGAAATCTTAAAAAATTAAGATAATAATTTTTATTTAATTTTTAATT
65 AAAA-CCATAGGAATATTAGAAATCTTGAAAAATTAAG--AATAATTTTTATTTAATTTTTAATT
*
736056 TTCAAAAAATTT
127 TTCAAAAAATTA
* * *
736068 ATTTCATACCTTAATAGAGAACCGAAAATATACAAAAAGTTTTAAAGATTTCTATACCCCTACGA
1 ATTTCATACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTAAAGATTTCTATACCCCTACGA
*
736133 AAATCCATAGGAATATTAGAAATCTTGAAAAATTAAGAATAACTTTTATTTAATTTTTAATTTTT
66 AAA-CCATAGGAATATTAGAAATCTTGAAAAATTAAGAATAATTTTTATTTAATTTTTAA-TTTT
*
736198 TAAAAAA-TA
129 CAAAAAATTA
* ***
736207 ATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTAAAGATTTCTATACATATACGG
1 ATTTCATACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTAAAGATTTCTATACCCCTAC-G
*
736272 AAAACTATAGGAATATTAGAAATCTCTGAAAAATTAAGAATAATTTTTATTTAAT
65 AAAACCATAGGAATATTAGAAATCT-TGAAAAATTAAGAATAATTTTTATTTAAT
736327 GATAAAATAA
Statistics
Matches: 234, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
139 99 0.42
140 46 0.20
141 89 0.38
ACGTcount: A:0.45, C:0.10, G:0.10, T:0.34
Consensus pattern (138 bp):
ATTTCATACCTTAATGGAGAACCGAAAAGATACGAAAAGTTTTAAAGATTTCTATACCCCTACGA
AAACCATAGGAATATTAGAAATCTTGAAAAATTAAGAATAATTTTTATTTAATTTTTAATTTTCA
AAAAATTA
Found at i:736356 original size:17 final size:18
Alignment explanation
Indices: 736336--736374 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
736326 TGATAAAATA
736336 ATTTTA-TTTATTATTTT
1 ATTTTATTTTATTATTTT
*
736353 A-TTTATTTTATTTTTTT
1 ATTTTATTTTATTATTTT
736370 ATTTT
1 ATTTT
736375 TAAAAATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 4 0.21
17 12 0.63
18 3 0.16
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (18 bp):
ATTTTATTTTATTATTTT
Found at i:736372 original size:13 final size:14
Alignment explanation
Indices: 736336--736374 Score: 57
Period size: 12 Copynumber: 3.0 Consensus size: 14
736326 TGATAAAATA
736336 ATTTTATTTA--TT
1 ATTTTATTTATTTT
736348 ATTTTATTTATTTT
1 ATTTTATTTATTTT
736362 ATTTT-TTTATTTT
1 ATTTTATTTATTTT
736375 TAAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 10 0.40
13 8 0.32
14 7 0.28
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTTATTTATTTT
Found at i:736373 original size:8 final size:8
Alignment explanation
Indices: 736336--736375 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
736326 TGATAAAATA
736336 ATTTTATTT
1 ATTTT-TTT
*
736345 ATTATTTT
1 ATTTTTTT
736353 ATTTATTTT
1 ATTT-TTTT
736362 ATTTTTTT
1 ATTTTTTT
736370 ATTTTT
1 ATTTTT
736376 AAAAATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
8 16 0.57
9 12 0.43
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (8 bp):
ATTTTTTT
Found at i:737397 original size:20 final size:21
Alignment explanation
Indices: 737358--737405 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
737348 TACAATTTGT
737358 ATCGATACAAACAATGAATGC
1 ATCGATACAAACAATGAATGC
* * *
737379 ATCGATACATA-AGTGAATGT
1 ATCGATACAAACAATGAATGC
737399 ATCGATA
1 ATCGATA
737406 TATGTCTGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.44, C:0.15, G:0.17, T:0.25
Consensus pattern (21 bp):
ATCGATACAAACAATGAATGC
Found at i:737517 original size:22 final size:22
Alignment explanation
Indices: 737489--737531 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
737479 ATTTTTCATT
737489 GTATTGATACATTCTAGGTTTC
1 GTATTGATACATTCTAGGTTTC
* *
737511 GTATTGATATATTCTGGGTTT
1 GTATTGATACATTCTAGGTTT
737532 TTGACCCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.09, G:0.21, T:0.49
Consensus pattern (22 bp):
GTATTGATACATTCTAGGTTTC
Done.