Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3265628
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.28
Warning! 491382 characters in sequence are not A, C, G, or T
File 10 of 17
Found at i:1602758 original size:27 final size:27
Alignment explanation
Indices: 1602465--1602772 Score: 233
Period size: 28 Copynumber: 11.1 Consensus size: 27
1602455 GTGGGCTTTA
* * *
1602465 AAAAGGGTGCCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* ** * *
1602493 AAAAGGAT-CCATTGACTTGTGGGATTT
1 AAAAGGGTGCCACGGAGTTGT-GGACTT
* * * *
1602520 AAAAGGGAGCCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* * * * *
1602548 AAAAAGGTACCACTGACTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
* ** *
1602576 AGAAGGGTGCCACTAACTTGTAGG-CTTT
1 AAAAGGGTGCCACGGAGTTGT-GGAC-TT
* * *
1602604 GAAAAGGGTGCCACTGACTTGTGGGCTTT
1 -AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
1602633 GAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1602660 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* *
1602687 AAAAGAGTGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
*
1602715 AAAAGGGTGCCACGGAGTTGTGGACGT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* * * *
1602742 AAAAGTGTGCCATGGAGTTGCGAACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1602769 AAAA
1 AAAA
1602773 AGAAATGCCA
Statistics
Matches: 240, Mismatches: 33, Indels: 15
0.83 0.11 0.05
Matches are distributed among these distances:
27 99 0.41
28 116 0.48
29 25 0.10
ACGTcount: A:0.27, C:0.16, G:0.32, T:0.26
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:1602774 original size:55 final size:54
Alignment explanation
Indices: 1602605--1602772 Score: 219
Period size: 55 Copynumber: 3.1 Consensus size: 54
1602595 GTAGGCTTTG
* * * * *
1602605 AAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGAGTGCCACGGAGTTGTGGACTT
*
1602660 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGAC-TT
* * * * *
1602715 AAAAGGGTGCCACGGAGTTGTGGACGTAAAAGTGTGCCATGGAGTTGCGAACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTT
1602769 AAAA
1 AAAA
1602773 AGAAATGCCA
Statistics
Matches: 100, Mismatches: 12, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
54 30 0.30
55 70 0.70
ACGTcount: A:0.28, C:0.15, G:0.34, T:0.23
Consensus pattern (54 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAGTGCCACGGAGTTGTGGACTT
Found at i:1618187 original size:17 final size:17
Alignment explanation
Indices: 1618165--1618197 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
1618155 TCCCGTGTGA
1618165 ATGTACGATACAATTTG
1 ATGTACGATACAATTTG
1618182 ATGTACGATACAATTT
1 ATGTACGATACAATTT
1618198 TGAAAAAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.36
Consensus pattern (17 bp):
ATGTACGATACAATTTG
Found at i:1935305 original size:18 final size:18
Alignment explanation
Indices: 1935282--1935389 Score: 58
Period size: 21 Copynumber: 5.3 Consensus size: 18
1935272 ATCTTCTTCT
1935282 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
1935300 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
1935321 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
1935342 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
1935363 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
1935384 CTCCTC
1 CTCCTC
1935390 TCTCTTCTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 14 0.20
19 4 0.06
20 6 0.09
21 22 0.31
22 6 0.09
23 4 0.06
24 8 0.11
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:1935337 original size:42 final size:42
Alignment explanation
Indices: 1935285--1935403 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
1935275 TTCTTCTCTC
*
1935285 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1935327 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1935369 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1935404 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1935344 original size:12 final size:11
Alignment explanation
Indices: 1935318--1935393 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1935308 TCTATTATCT
*
1935318 CTCCTGTCTCTC
1 CTCCTATCTC-C
1935330 CTCCTATCATCC
1 CTCCTATC-TCC
1935342 CTCCTATCT--
1 CTCCTATCTCC
*
1935351 CTACTATCT--
1 CTCCTATCTCC
*
1935360 CTCCTGTCTCTC
1 CTCCTATCTC-C
1935372 CTCCTATCATCC
1 CTCCTATC-TCC
*
1935384 CTCCTCTCTC
1 CTCCTATCTC
1935394 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1937822 original size:18 final size:18
Alignment explanation
Indices: 1937792--1937838 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
1937782 ATCTTCTTCT
1937792 CTCCTC-CTCCTATCATCC
1 CTCCTCTCT-CTATCATCC
* *
1937810 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATCATCC
*
1937828 CTCCTGTCTCT
1 CTCCTCTCTCT
1937839 CCTCCTATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.09, C:0.47, G:0.02, T:0.43
Consensus pattern (18 bp):
CTCCTCTCTCTATCATCC
Found at i:1937847 original size:42 final size:42
Alignment explanation
Indices: 1937795--1937913 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
1937785 TTCTTCTCTC
* *
1937795 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCA
* *
1937837 CTCCTCCTATCAACCCTCCTATCTCTACTATCTCTCCTGTCA
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCA
* * *
1937879 CTCTTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1937914 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.11, C:0.45, G:0.02, T:0.42
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCA
Found at i:1948147 original size:42 final size:42
Alignment explanation
Indices: 1948091--1948209 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1948081 TTCTTCTCTC
* * *
1948091 CTCCTTCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1948133 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1948175 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1948210 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1948150 original size:12 final size:11
Alignment explanation
Indices: 1948124--1948199 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1948114 TCTATTATCT
*
1948124 CTCCTGTCTCTC
1 CTCCTATCTC-C
1948136 CTCCTATCATCC
1 CTCCTATC-TCC
1948148 CTCCTATCT--
1 CTCCTATCTCC
*
1948157 CTACTATCT--
1 CTCCTATCTCC
*
1948166 CTCCTGTCTCTC
1 CTCCTATCTC-C
1948178 CTCCTATCATCC
1 CTCCTATC-TCC
*
1948190 CTCCTCTCTC
1 CTCCTATCTC
1948200 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1948151 original size:24 final size:24
Alignment explanation
Indices: 1948115--1948200 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1948105 CCTCCTCTCT
* *
1948115 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1948139 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1948160 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1948181 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1948201 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1948175 original size:18 final size:18
Alignment explanation
Indices: 1948106--1948176 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1948096 TCTGTCATCC
* *
1948106 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1948124 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1948146 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1948166 CTCCTGTCTCT
1 CTCCTGTCTCT
1948177 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1950817 original size:29 final size:32
Alignment explanation
Indices: 1950766--1950835 Score: 83
Period size: 29 Copynumber: 2.2 Consensus size: 32
1950756 ATGTGATATT
*
1950766 ATGAATTTTTGATGATTCATGTTTTGTTGT-TGA
1 ATGAA-TTTTGATGATT-ATGTTATGTTGTATGA
1950799 ATGAATTTTGATG-TT-TGTTATGTTGTATGA
1 ATGAATTTTGATGATTATGTTATGTTGTATGA
*
1950829 TTGAATT
1 ATGAATT
1950836 ATGTTTGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 10 0.29
30 9 0.26
31 2 0.06
32 8 0.24
33 5 0.15
ACGTcount: A:0.23, C:0.01, G:0.21, T:0.54
Consensus pattern (32 bp):
ATGAATTTTGATGATTATGTTATGTTGTATGA
Found at i:1951001 original size:13 final size:13
Alignment explanation
Indices: 1950983--1951007 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1950973 CAACATTCCT
1950983 TGTATCGATACAA
1 TGTATCGATACAA
1950996 TGTATCGATACA
1 TGTATCGATACA
1951008 TTGGGTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1954120 original size:12 final size:11
Alignment explanation
Indices: 1954098--1954173 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1954088 AGAGAAAGAA
*
1954098 GAGAGAGGAGG
1 GAGATAGGAGG
1954109 GATGATAGGAGG
1 GA-GATAGGAGG
*
1954121 AGAGACAGGA--
1 -GAGATAGGAGG
*
1954131 GAGATAGTA--
1 GAGATAGGAGG
1954140 GAGATAGGAGG
1 GAGATAGGAGG
1954151 GATGATAGGAGG
1 GA-GATAGGAGG
*
1954163 AGAGACAGGAG
1 -GAGATAGGAG
1954174 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1954130 original size:24 final size:24
Alignment explanation
Indices: 1954097--1954182 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1954087 AAGAGAAAGA
*
1954097 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1954121 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1954139 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1954163 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1954183 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1954149 original size:42 final size:42
Alignment explanation
Indices: 1954088--1954206 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1954078 TAGCCCTCAA
* *
1954088 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1954130 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1954172 AGAGATAATAGAGAGAGGAGGGATAATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1954207 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.44, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1954190 original size:18 final size:18
Alignment explanation
Indices: 1954163--1954212 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
1954153 TGATAGGAGG
*
1954163 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
*
1954181 AGAGAGAGGAGGGATAAT
1 AGAGAGAGGAGAGATAAT
1954199 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
1954213 AGAAGATGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 2 0.07
18 26 0.93
ACGTcount: A:0.46, C:0.02, G:0.44, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:1960911 original size:159 final size:159
Alignment explanation
Indices: 1960748--1961229 Score: 476
Period size: 159 Copynumber: 3.0 Consensus size: 159
1960738 GTAATAGTCT
1960748 CCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTTAGTTAGGATACATGACATTGGTGAT
1 CCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTTAGTTAGGATACATGACATTGGTGAT
*
1960813 TTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGCTTTTGATAAAATCAAAGTTTGTCTCTTTAAT
66 TTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGATTTTGATAAAATCAAAGTTTGTCTCTTTAAT
1960878 CAGATAAACATGAATACTCACACTAATTC
131 CAGATAAACATGAATACTCACACTAATTC
* * * * * * * * * * * ** * *
1960907 CCATTCTTTTTAGGATTAGGCA-CCATTAACATAGTA-TTCTCGTTATGATACAAAATATTGATG
1 CCATTATATTCAAGATTAGGAAGCCA-AAACACATTACCT-TAGTTAGGATACATGACATTGGTG
* * * * * * ** * ** *
1960970 CTTTGATTTTGCAT--GAAAATCTTTTCTTTGCCCT-ATTTTCCTTAATAA-GAAAGTTCATCCC
64 ATTTG-GTGT-CATAAGAAAAGCTTTTCTTTTCACTGATTTT-GATAA-AATCAAAGTTTGTCTC
* * * * * ** * *
1961031 TTGAATAAGACAAGCATCG-ATTCTCGTAAT-AGTC
125 TTTAATCAGATAAACAT-GAATACTCACACTAATTC
1961065 TCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTTAGTTAGGATACATGACATTGGTGA
1 -CCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTTAGTTAGGATACATGACATTGGTGA
* * *
1961130 TTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGTTTTTGATAGAATCAAAGCTTGTCTCTTTAA
65 TTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGATTTTGATAAAATCAAAGTTTGTCTCTTTAA
1961195 TCAGATAAACATGAATACTCACACTAATTC
130 TCAGATAAACATGAATACTCACACTAATTC
1961225 CCATT
1 CCATT
1961230 CTTTTTAGGA
Statistics
Matches: 231, Mismatches: 76, Indels: 32
0.68 0.22 0.09
Matches are distributed among these distances:
157 3 0.01
158 16 0.07
159 193 0.84
160 16 0.07
161 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
CCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTTAGTTAGGATACATGACATTGGTGAT
TTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGATTTTGATAAAATCAAAGTTTGTCTCTTTAAT
CAGATAAACATGAATACTCACACTAATTC
Found at i:1961023 original size:318 final size:318
Alignment explanation
Indices: 1960658--1961299 Score: 1257
Period size: 318 Copynumber: 2.0 Consensus size: 318
1960648 GATGATTTTC
1960658 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATAAGAAAGTTCATCCCTTGAATAAGA
1 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATAAGAAAGTTCATCCCTTGAATAAGA
1960723 CAAGCATCGATTCTCGTAATAGTCTCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTT
66 CAAGCATCGATTCTCGTAATAGTCTCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTT
1960788 AGTTAGGATACATGACATTGGTGATTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGCTTTTGA
131 AGTTAGGATACATGACATTGGTGATTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGCTTTTGA
*
1960853 TAAAATCAAAGTTTGTCTCTTTAATCAGATAAACATGAATACTCACACTAATTCCCATTCTTTTT
196 TAAAATCAAAGCTTGTCTCTTTAATCAGATAAACATGAATACTCACACTAATTCCCATTCTTTTT
1960918 AGGATTAGGCACCATTAACATAGTATTCTCGTTATGATACAAAATATTGATGCTTTGA
261 AGGATTAGGCACCATTAACATAGTATTCTCGTTATGATACAAAATATTGATGCTTTGA
1960976 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATAAGAAAGTTCATCCCTTGAATAAGA
1 TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATAAGAAAGTTCATCCCTTGAATAAGA
1961041 CAAGCATCGATTCTCGTAATAGTCTCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTT
66 CAAGCATCGATTCTCGTAATAGTCTCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTT
*
1961106 AGTTAGGATACATGACATTGGTGATTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGTTTTTGA
131 AGTTAGGATACATGACATTGGTGATTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGCTTTTGA
*
1961171 TAGAATCAAAGCTTGTCTCTTTAATCAGATAAACATGAATACTCACACTAATTCCCATTCTTTTT
196 TAAAATCAAAGCTTGTCTCTTTAATCAGATAAACATGAATACTCACACTAATTCCCATTCTTTTT
1961236 AGGATTAGGCACCATTAACATAGTATTCTCGTTATGATACAAAATATTGATGCTTTGA
261 AGGATTAGGCACCATTAACATAGTATTCTCGTTATGATACAAAATATTGATGCTTTGA
1961294 TTTTGC
1 TTTTGC
1961300 TTCAAAGGCT
Statistics
Matches: 321, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
318 321 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.37
Consensus pattern (318 bp):
TTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTAATAAGAAAGTTCATCCCTTGAATAAGA
CAAGCATCGATTCTCGTAATAGTCTCCATTATATTCAAGATTAGGAAGCCAAAACACATTACCTT
AGTTAGGATACATGACATTGGTGATTTGGTGTCATAAGAAAAGCTTTTCTTTTCACTGCTTTTGA
TAAAATCAAAGCTTGTCTCTTTAATCAGATAAACATGAATACTCACACTAATTCCCATTCTTTTT
AGGATTAGGCACCATTAACATAGTATTCTCGTTATGATACAAAATATTGATGCTTTGA
Found at i:1963536 original size:480 final size:467
Alignment explanation
Indices: 1962478--1963632 Score: 1576
Period size: 469 Copynumber: 2.4 Consensus size: 467
1962468 AGTCTTCCCA
* * *
1962478 TTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACTTTAAATGAGACAAACTTGGATTCTAGG
1 TTCTTCCCACCAATTTTTGT-AAGTCTAAGGTCGTGCCTTAAATGAGACAAACTTGGATTCT-GG
*
1962543 AATGATCTTCATTCATTTTGTGATTAGGCACAATAAACACATTCTCCTCACCAGGATAAATGATA
64 AATGATCTTCATTCATTTTGTGATTAGGCATAATAAACACATTCTCCTCACCAGGATAAATGATA
* * * *
1962608 TTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCCCTATTTTTCTTAAAATAAAGTTCATCT
129 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAGTTCATCC
* * * **
1962673 CTTGAATAAGACAAGCATCGATTCTCATTACAGTCTCCATTACTTTCAAGATTGGGAAGCCAAAA
194 CTTGAATAAGACAAGCATCGATTCCCATAACAGTCTCCATTACTTTCAACATTAAGAAGCCAAAA
*
1962738 CACATTGCCTTCGTTAGGATATACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCT
259 CACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCT
*
1962803 ACCATTTTTTATAGAATTTGCTTCTCAAATAAGACAAACATGAATACTCACACTAATCCCCATTC
324 ACCATTTTTTATAGAATTTGCTTCTCAAATAACACAAACATGAATACTCACACTAATCCCCATTC
* * * * *
1962868 TTTTCTGGATTAGGCACCATAAATATAGTCTTCTCTTTAGGATACATGAAATTGATGCTTTGGTT
389 TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAAATTGATACTTTGGTT
*
1962933 TCACAATAAAGGCT
454 TCACAACAAAGGCT
** * * * * * *
1962947 TTCTTCCTTCTAATTTTTGTAAATTTTAGGTTCGTGCCTTAAATGAGCCAAACTTGGATTCTAGT
1 TTCTTCCCACCAATTTTTGTAAGTCTAAGG-TCGTGCCTTAAATGAGACAAACTTGGATTCT-GG
* *
1963012 AATGATTTTCATTCATTTTGTGATTAGGCATAATAAACACATTCTTCTCACCAGGATAAATGATA
64 AATGATCTTCATTCATTTTGTGATTAGGCATAATAAACACATTCTCCTCACCAGGATAAATGATA
* * **
1963077 TTGACGATTTTTTTTTGTGTGGAAATC-TTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATC
129 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-AAAGTTCATC
**
1963141 CCTTGAATAAGACAAGCATCGATTCCCATAACAGTCTCCATTACTTTTGACATTAAGAAGCCAAA
193 CCTTGAATAAGACAAGCATCGATTCCCATAACAGTCTCCATTACTTTCAACATTAAGAAGCCAAA
* *
1963206 GCACATTGCCTTCGTTAGGATACACGATATTGATGCTTTGGTGTTGCAAGAAAAGCTCTTTTTTT
258 ACACATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAAG--C---TTTT
* * *
1963271 TTTTCTACCCTTTTTTATAGCATAAAAGTTTG-TCTCTTAAATAACACAAACATGAATACTCACC
318 TTTTCTACCATTTTTTATAG-----AA-TTTGCT-TCTCAAATAACACAAACATGAATACTCACA
* *
1963335 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATATACGACAT
376 CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAAAT
**
1963400 TGATACTTTGGTTTTGCAACAAAGGCT
441 TGATACTTTGGTTTCACAACAAAGGCT
* * * * * * *
1963427 TTTTTCCCACCAATTTTTTTGAAGTCTAAGGTCATGCCTCAAATGAAACAGACATGGATTCTGGA
1 TTCTTCCCACCAATTTTTGT-AAGTCTAAGGTCGTGCCTTAAATGAGACAAACTTGGATTCTGG-
* * ** *
1963492 AATGATCTTCATTCTTTTTGTGATTAGGCATTATAAACACATTCTCCTCATTAGGATAAATGACA
64 AATGATCTTCATTCATTTTGTGATTAGGCATAATAAACACATTCTCCTCACCAGGATAAATGATA
* *
1963557 TTGATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTAACATGAAAGTTCATC
129 TTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAAT-AAAGTTCATC
1963622 CCTTGAATAAG
193 CCTTGAATAAG
1963633 TGATGACAAC
Statistics
Matches: 594, Mismatches: 75, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
468 30 0.05
469 250 0.42
471 1 0.00
474 23 0.04
479 4 0.01
480 234 0.39
481 52 0.09
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (467 bp):
TTCTTCCCACCAATTTTTGTAAGTCTAAGGTCGTGCCTTAAATGAGACAAACTTGGATTCTGGAA
TGATCTTCATTCATTTTGTGATTAGGCATAATAAACACATTCTCCTCACCAGGATAAATGATATT
GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAAAATAAAGTTCATCCCT
TGAATAAGACAAGCATCGATTCCCATAACAGTCTCCATTACTTTCAACATTAAGAAGCCAAAACA
CATTGCCTTCGTTAGGATACACGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCTAC
CATTTTTTATAGAATTTGCTTCTCAAATAACACAAACATGAATACTCACACTAATCCCCATTCTT
TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGAAATTGATACTTTGGTTTC
ACAACAAAGGCT
Found at i:1968653 original size:42 final size:42
Alignment explanation
Indices: 1968598--1968716 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1968588 TTCTTCTCTC
* *
1968598 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
1968640 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1968682 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1968717 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.08, C:0.46, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1968657 original size:12 final size:11
Alignment explanation
Indices: 1968631--1968706 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1968621 TCTATTATCT
*
1968631 CTCCTGTCTCTC
1 CTCCTATCTC-C
1968643 CTCCTATCATCC
1 CTCCTATC-TCC
1968655 CTCCTATCT--
1 CTCCTATCTCC
*
1968664 CTACTATCT--
1 CTCCTATCTCC
*
1968673 CTCCTGTCTCTC
1 CTCCTATCTC-C
1968685 CTCCTATCATCC
1 CTCCTATC-TCC
*
1968697 CTCCTCTCTC
1 CTCCTATCTC
1968707 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1968658 original size:24 final size:24
Alignment explanation
Indices: 1968622--1968707 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1968612 CCTCCTCTCT
* *
1968622 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
1968646 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
1968667 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
1968688 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
1968708 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:1968682 original size:18 final size:18
Alignment explanation
Indices: 1968613--1968683 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
1968603 CCTGTCATCC
* *
1968613 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
1968631 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
1968653 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
1968673 CTCCTGTCTCT
1 CTCCTGTCTCT
1968684 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:1971551 original size:475 final size:473
Alignment explanation
Indices: 1970591--1971800 Score: 1657
Period size: 475 Copynumber: 2.5 Consensus size: 473
1970581 CCAAAGCAGT
* *
1970591 AATGACATTGATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCT-TAACAT-GA
1 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-TTT-CTGTAAAATCG-
* * * *
1970654 AAGTTCATCCCTTGAATAAGACAAGCATAGATTCTCGTAATAGTCTCCATTATTTTTAAGATTGG
63 AAGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATT-G
*
1970719 GAAGCCAAAACACATTACCTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGC
127 GAAGCCAAAACACATTACCTTCGTTAGGATACA-GACATTGATGCTTTGGTGTTGCAAGAAAAGC
* * * *
1970784 TTTTCTTCCCGTCGTTTTTGATAGAATCAAAGTTTGTCTCTTGACA-AAGACAAACATGAATACT
191 TTTTCTTTCCGCCGTTTTTGATAGAATCAAAGTTTATCTCTT-AAATAAGACAAACATGAATACT
* * *
1970848 CACACTCATCCCAATTCTTTTCAAAATTAGGCACCATAGAAAAAGTCTTCTCATAAGGAAACATG
255 CACACTAATCCCAATTCTTTTCAAAATTAGGCACCACAGAAAAAGTCCTCTCATAAGGAAACATG
* * * * * * *
1970913 ATATTGATGCTTTGGTTTCACAACAAAGGGTTTTTTCCCATCAATTTTTGTAGAGTCTAAGTTCG
320 ATATTGATGCTTTGATTTCACAACAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCG
** * * *
1970978 TGTGTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTCGTGATAAGGCGCTAT
385 TGCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCTTTTCGTGATAAAGCACTAT
1971043 AAAAACATTCTCTGCATTAGGATA
450 AAAAACATTCTCTGCATTAGGATA
*
1971067 AATGACATTGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTCTGTAAAATCGAAG
1 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCTGTAAAATCGAAG
* * *
1971132 TTCTTCCCTTGAATAAGACAAGCATCGATTCTCATAACACTCTCCATTCTTTTCAAGATTAGGAA
66 TTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATT-GGAA
* * *
1971197 GCCAAAACACATTGCCTTCGTTAGGAATGACA-ACATTCATGCTTTGGTGTTGCAAGAAATGCTT
130 GCCAAAACACATTACCTTCGTTAGG-AT-ACAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTT
* * * *
1971261 TTGTTTCTGCCGTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCGC
193 TTCTTTCCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCAC
*
1971326 ACTAATCCCAATTCTTTTCAAGATTAGGCACCACA-AACAAAGTCCTCTCACT-AGGAAACATGA
258 ACTAATCCCAATTCTTTTCAAAATTAGGCACCACAGAA-AAAGTCCTCTCA-TAAGGAAACATGA
** *
1971389 TATTGATGCTTTGATTTTGCAACAAAGGCTTTCTTCTCACCAATTGTTATAAAGTCTAAGTTCGT
321 TATTGATGCTTTGATTTCACAACAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGT
* *
1971454 GCCTCAAATGAGACAAATATGGATTCTAGTAAAGTTCTTCATTCTTGTT-GTGATAAAGCACTAT
386 GCCTCAAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCTT-TTCGTGATAAAGCACTAT
* *
1971518 AAACACATTTTTCT-CATTAGGATA
450 AAAAACA-TTCTCTGCATTAGGATA
* ** *
1971542 AATGACATTGATTATTTTCTTTTGCATCAAAATCTTTTCTTTGCCCTATTT-TAAGTAAAATCAA
1 AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCT--GTAAAATCGA
*
1971606 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCCTTTCAAGATTGAG
64 AGTTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTG-G
* * ** **
1971671 AAGCCAAAACACATTCCCTT-GAATAGGATACATGACATTGATGCTTTGGCATCACAAGAAAAGC
128 AAGCCAAAACACATTACCTTCG-TTAGGATACA-GACATTGATGCTTTGGTGTTGCAAGAAAAGC
* * *
1971735 TTTTCTTTCCACCGTTTTTTATAGAATCAAAGTTTACCTCTTAAATAAGACAAACATGAATACTC
191 TTTTCTTTCCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTC
1971800 A
256 A
1971801 TACTTGTCAC
Statistics
Matches: 649, Mismatches: 70, Indels: 30
0.87 0.09 0.04
Matches are distributed among these distances:
474 10 0.02
475 405 0.62
476 231 0.36
477 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (473 bp):
AATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTCTGTAAAATCGAAG
TTCATCCCTTGAATAAGACAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCAAGATTGGAAG
CCAAAACACATTACCTTCGTTAGGATACAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC
TTTCCGCCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACTCACACT
AATCCCAATTCTTTTCAAAATTAGGCACCACAGAAAAAGTCCTCTCATAAGGAAACATGATATTG
ATGCTTTGATTTCACAACAAAGGCTTTCTTCCCACCAATTGTTATAAAGTCTAAGTTCGTGCCTC
AAATGAGACAAACATGGATTCTAGTAAAGATCTTCATTCTTTTCGTGATAAAGCACTATAAAAAC
ATTCTCTGCATTAGGATA
Found at i:1972928 original size:79 final size:79
Alignment explanation
Indices: 1972779--1973328 Score: 796
Period size: 79 Copynumber: 6.9 Consensus size: 79
1972769 TAGAGATAAC
* * * * * * * *
1972779 AACGGGGCTAGAGTATCCCCGATTATAGAAAAA-CGGTGTTCTAAAAAAATAAAATCGGGGTTAG
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATTGATGTT-T-TAGAAATAAAACCGGGGTTGG
1972843 AGTATCCCCTCGGAAAT
63 AGTATCCCCTCGGAAAT
* * *
1972860 AACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
*
1972925 ATCCCCTCGAAAAT
66 ATCCCCTCGGAAAT
* * * *
1972939 AACAGGGTTTGAGTATCCTCGATTATGAAAAATTGATGTCTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1973004 ATCCCCTCGGAAAT
66 ATCCCCTCGGAAAT
* *
1973018 AACGGGGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1973083 ATCCCCTCGGAAAT
66 ATCCCCTCGGAAAT
* * * *
1973097 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACAGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1973162 ATCCCCTCGGAAAT
66 ATCCCCTCGGAAAT
* * * *
1973176 AACGGGGTTAGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
* *
1973241 ATCCCCTTGAAAAT
66 ATCCCCTCGGAAAT
* *
1973255 AACGGGGTTGGAGTATCCCCGATTATAAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1973320 ATCCCCTCG
66 ATCCCCTCG
1973329 ATTAAAGGAA
Statistics
Matches: 425, Mismatches: 43, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
79 391 0.92
80 7 0.02
81 27 0.06
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
ATCCCCTCGGAAAT
Found at i:1973349 original size:53 final size:52
Alignment explanation
Indices: 1973257--1973384 Score: 174
Period size: 53 Copynumber: 2.5 Consensus size: 52
1973247 TTGAAAATAA
*
1973257 CGGGGTTGGAGTAT-CCCCGATTATAAAAAATTGATGTTTT-AGAGATAAAAC
1 CGGGGTTGGAGTATCCCCCGATTATAAAAAATTGATGTTTTGA-AAATAAAAC
* *
1973308 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCC-CGATTATAA-AAAATTGATGTTTTGAAAATAAAAC
1973361 CGGGGTTGGAGTAT-CCCCGATTAT
1 CGGGGTTGGAGTATCCCCCGATTAT
1973385 GAGTAATTGA
Statistics
Matches: 69, Mismatches: 3, Indels: 9
0.85 0.04 0.11
Matches are distributed among these distances:
51 20 0.29
52 8 0.12
53 40 0.58
54 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.27, T:0.29
Consensus pattern (52 bp):
CGGGGTTGGAGTATCCCCCGATTATAAAAAATTGATGTTTTGAAAATAAAAC
Found at i:1974381 original size:43 final size:43
Alignment explanation
Indices: 1974334--1974429 Score: 174
Period size: 43 Copynumber: 2.2 Consensus size: 43
1974324 TCTCGCTGGA
*
1974334 GCTGCTGTTGTGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
*
1974377 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1974420 GCTGCTGTTG
1 GCTGCTGTTG
1974430 GAGCTGCTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.06, C:0.21, G:0.40, T:0.33
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
Found at i:1974383 original size:18 final size:18
Alignment explanation
Indices: 1974308--1974492 Score: 97
Period size: 18 Copynumber: 9.8 Consensus size: 18
1974298 AAATTGCTAC
*
1974308 CTGCTGGAGTTGCTGCT-
1 CTGCTGGAGCTGCTGCTG
*
1974325 CTCGCTGGAGCTGCTGTTG
1 CT-GCTGGAGCTGCTGCTG
* *
1974344 TGTGCTGGAGCTGCAG-TCG
1 -CTGCTGGAGCTGCTGCT-G
1974363 CTGCTGGAGTTGCTGCTGCTGTTG
1 CTGCTGGA---GCTGCTGC---TG
*
1974387 CGTGCTGGAGCTGCAG-TCG
1 C-TGCTGGAGCTGCTGCT-G
* *
1974406 TTGCTGGAGTTGCTGCTG
1 CTGCTGGAGCTGCTGCTG
* *
1974424 CTGTTGGAGCTGCTGTTG
1 CTGCTGGAGCTGCTGCTG
* * ** *
1974442 CGTGCTAGAACTATTGCCG
1 C-TGCTGGAGCTGCTGCTG
* *
1974461 CCGCTGGAGCTGGTGCTG
1 CTGCTGGAGCTGCTGCTG
1974479 CTGCTGGAGCTGCT
1 CTGCTGGAGCTGCT
1974493 TTTGCATGTT
Statistics
Matches: 124, Mismatches: 29, Indels: 29
0.68 0.16 0.16
Matches are distributed among these distances:
17 2 0.02
18 73 0.59
19 26 0.21
20 1 0.01
21 6 0.05
22 6 0.05
24 2 0.02
25 8 0.06
ACGTcount: A:0.08, C:0.23, G:0.38, T:0.31
Consensus pattern (18 bp):
CTGCTGGAGCTGCTGCTG
Found at i:1974849 original size:26 final size:26
Alignment explanation
Indices: 1974815--1974905 Score: 155
Period size: 26 Copynumber: 3.5 Consensus size: 26
1974805 AATTTTTATG
*
1974815 CTTTCCCATGCTGCATTTTTTATTTG
1 CTTTCCCATGCTGCATTTTTTATTTC
*
1974841 CTTTCCCATGCTGCACTTTTTATTTC
1 CTTTCCCATGCTGCATTTTTTATTTC
*
1974867 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTTTATTTC
1974893 CTTTCCCATGCTG
1 CTTTCCCATGCTG
1974906 TAAGTTTTCA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.11, C:0.30, G:0.10, T:0.49
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTTTATTTC
Found at i:1974948 original size:9 final size:9
Alignment explanation
Indices: 1974926--1974981 Score: 60
Period size: 9 Copynumber: 6.1 Consensus size: 9
1974916 CGTTTGTAGG
*
1974926 TTTTTTTTA
1 TTTTATTTA
*
1974935 ATTTATTTA
1 TTTTATTTA
1974944 TTTTATTTTA
1 TTTTA-TTTA
1974954 TTTTATTTA
1 TTTTATTTA
1974963 TTATTA-TTA
1 TT-TTATTTA
*
1974972 TTTTTTTTA
1 TTTTATTTA
1974981 T
1 T
1974982 GAATCGATTT
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
8 2 0.05
9 26 0.65
10 12 0.30
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTATTTA
Found at i:1974961 original size:23 final size:22
Alignment explanation
Indices: 1974926--1974981 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
1974916 CGTTTGTAGG
1974926 TTTTTTTTAATTTATTTATT-TTA
1 TTTTTTTT-ATTTA-TTATTATTA
1974949 TTTTATTTTATTTATTATTATTA
1 TTTT-TTTTATTTATTATTATTA
1974972 TTTTTTTTAT
1 TTTTTTTTAT
1974982 GAATCGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
22 11 0.35
23 16 0.52
24 4 0.13
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (22 bp):
TTTTTTTTATTTATTATTATTA
Found at i:1975741 original size:28 final size:28
Alignment explanation
Indices: 1975710--1975795 Score: 68
Period size: 28 Copynumber: 3.1 Consensus size: 28
1975700 TGAGGACTAA
1975710 AAAGTGCCACCAACTCGTGTGGGCTTTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
** ** * * ***
1975738 AAAG-GCGTCCTGCTC-TTTGAGAACTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
1975764 AAAGGTGCCACCAACTCGTGTGGGCTTTG
1 AAA-GTGCCACCAACTCGTGTGGGCTTTG
1975793 AAA
1 AAA
1975796 AGAAAAGGCG
Statistics
Matches: 37, Mismatches: 18, Indels: 5
0.62 0.30 0.08
Matches are distributed among these distances:
26 9 0.24
27 8 0.22
28 11 0.30
29 9 0.24
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (28 bp):
AAAGTGCCACCAACTCGTGTGGGCTTTG
Found at i:1975869 original size:62 final size:61
Alignment explanation
Indices: 1975690--1975981 Score: 359
Period size: 62 Copynumber: 4.9 Consensus size: 61
1975680 ATAAAGTGTA
*
1975690 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTT------GAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGGAAAGGCG
* * *
1975745 TCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-AAAAGGGAAAGGCG
* *
1975806 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
1 TCCTGCTCTTTGAGGACTG-AAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGG-GAAAGGCG
* * * * *
1975868 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGGAAAGGCG
* * *
1975928 TCCTGTTCTTTGAGGACTAGAAAAATGCCACCAACTCGTGTGGGTTTTAAAAGG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGG
1975982 CGTCCTGCTC
Statistics
Matches: 204, Mismatches: 21, Indels: 17
0.84 0.09 0.07
Matches are distributed among these distances:
55 44 0.22
59 3 0.01
60 50 0.25
61 28 0.14
62 76 0.37
63 3 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTAAAAGGGAAAGGCG
Found at i:1975930 original size:122 final size:120
Alignment explanation
Indices: 1975690--1975997 Score: 431
Period size: 122 Copynumber: 2.6 Consensus size: 120
1975680 ATAAAGTGTA
1975690 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAA---GGCGTCCTGC
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGGCGTCCTGC
1975751 TCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
66 TCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
*
1975806 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCGTCC
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG---GCGTCC
* *
1975871 TGCTCTTTGA-AGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
63 TGCTCTTTGAGA-ACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCG
* * *
1975928 TCCTGTTCTTTGAGGACTAGAAAAA-TGCCACCAACTCGTGTGGG-TTTTAAA--AGGCGTCCTG
1 TCCTGCTCTTTGAGGACT-GAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGGCGTCCTG
1975989 CTCTTTGAG
65 CTCTTTGAG
1975998 CCCTTTGATC
Statistics
Matches: 174, Mismatches: 7, Indels: 21
0.86 0.03 0.10
Matches are distributed among these distances:
116 34 0.20
117 32 0.18
119 1 0.01
120 1 0.01
121 10 0.06
122 71 0.41
123 25 0.14
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGGCGTCCTGC
TCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
Found at i:1988090 original size:79 final size:79
Alignment explanation
Indices: 1987941--1988491 Score: 827
Period size: 79 Copynumber: 6.9 Consensus size: 79
1987931 TAGAGATAAC
* * ** * * * *
1987941 AACGGGGCTAGAGTATCCCCGATTATGGAAAAACAG-TGTTCTAAAAAAATAAAATCGGGGTTAG
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATTGATGTT-T-TAGAAATAAAACCGGGGTTGG
*
1988005 AGTATCCCCTCAAAAAT
63 AGTATCCCCTCGAAAAT
* * *
1988022 AACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1988087 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
1988101 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTTGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1988166 ATCCCCTC-AGAAAT
66 ATCCCCTCGA-AAAT
*
1988180 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
*
1988245 ATCCCCTCGGAAAT
66 ATCCCCTCGAAAAT
* * *
1988259 AACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
* *
1988324 ATCCCCTTGGAAAT
66 ATCCCCTCGAAAAT
* * * *
1988338 AACGAGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1988403 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
1988417 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
1988482 ATCCCCTCGA
66 ATCCCCTCGA
1988492 TTAAAGGAAA
Statistics
Matches: 435, Mismatches: 32, Indels: 8
0.92 0.07 0.02
Matches are distributed among these distances:
78 1 0.00
79 400 0.92
80 8 0.02
81 26 0.06
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
ATCCCCTCGAAAAT
Found at i:1988511 original size:53 final size:51
Alignment explanation
Indices: 1988419--1988545 Score: 154
Period size: 53 Copynumber: 2.5 Consensus size: 51
1988409 TCGAAAATAA
*
1988419 CGGGGTTGGAGTAT-CCCCGATTATGAAAAATTGATGTTTT-AGAGATAAAAC
1 CGGGGTTGGAGTATCCCCCGATTA-GAAAAATTGATGTTTTGA-AAATAAAAC
*
1988470 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCC-CGATTAGAA--AAATTGATGTTTTGAAAATAAAAC
*
1988523 CGGGGTTGAAGTAT-CCCCGATTA
1 CGGGGTTGGAGTATCCCCCGATTA
1988546 TGAGCAATTG
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
51 22 0.32
52 6 0.09
53 39 0.57
54 1 0.01
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCCGATTAGAAAAATTGATGTTTTGAAAATAAAAC
Found at i:1989535 original size:12 final size:12
Alignment explanation
Indices: 1989520--1989597 Score: 51
Period size: 12 Copynumber: 6.8 Consensus size: 12
1989510 AGCTGCAGTC
1989520 GCTGCTGGAGTT
1 GCTGCTGGAGTT
**
1989532 GCTGCTGCTGTT
1 GCTGCTGGAGTT
1989544 GCGTGCTGGA---
1 GC-TGCTGGAGTT
*
1989554 GCTGC---AGTC
1 GCTGCTGGAGTT
1989563 GCTGCTGGAGTT
1 GCTGCTGGAGTT
**
1989575 GCTGCTGCTGTT
1 GCTGCTGGAGTT
1989587 GCGTGCTGGAG
1 GC-TGCTGGAG
1989598 CTGCAGTCGT
Statistics
Matches: 49, Mismatches: 9, Indels: 15
0.67 0.12 0.21
Matches are distributed among these distances:
6 1 0.02
9 8 0.16
10 2 0.04
12 27 0.55
13 11 0.22
ACGTcount: A:0.06, C:0.22, G:0.41, T:0.31
Consensus pattern (12 bp):
GCTGCTGGAGTT
Found at i:1989539 original size:43 final size:43
Alignment explanation
Indices: 1989492--1989630 Score: 269
Period size: 43 Copynumber: 3.2 Consensus size: 43
1989482 TCTCGCTGGA
1989492 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1989535 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
*
1989578 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
1989621 GCTGCTGTTG
1 GCTGCTGTTG
1989631 GAGCTGCTGT
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 95 1.00
ACGTcount: A:0.06, C:0.22, G:0.40, T:0.32
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTGGAGCTGCAGTCGCTGCTGGAGTTGCT
Found at i:1989541 original size:18 final size:18
Alignment explanation
Indices: 1989466--1989693 Score: 113
Period size: 18 Copynumber: 11.8 Consensus size: 18
1989456 AAATTGCTAC
*
1989466 CTGCTGGAGTTGCTGCT-
1 CTGCTGGAGCTGCTGCTG
*
1989483 CTCGCTGGAGCTGCTGTTG
1 CT-GCTGGAGCTGCTGCTG
*
1989502 CGTGCTGGAGCTGCAG-TCG
1 C-TGCTGGAGCTGCTGCT-G
1989521 CTGCTGGAGTTGCTGCTGCTGTTG
1 CTGCTGGA---GCTGCTGC---TG
*
1989545 CGTGCTGGAGCTGCAG-TCG
1 C-TGCTGGAGCTGCTGCT-G
1989564 CTGCTGGAGTTGCTGCTGCTGTTG
1 CTGCTGGA---GCTGCTGC---TG
*
1989588 CGTGCTGGAGCTGCAG-TCG
1 C-TGCTGGAGCTGCTGCT-G
* *
1989607 TTGCTGGAGTTGCTGCTG
1 CTGCTGGAGCTGCTGCTG
* *
1989625 CTGTTGGAGCTGCTGTTG
1 CTGCTGGAGCTGCTGCTG
* * * *
1989643 CGTGCTAGAACTGTTGCCG
1 C-TGCTGGAGCTGCTGCTG
* *
1989662 CCGCTGGAGCTGGTGCTG
1 CTGCTGGAGCTGCTGCTG
1989680 CTGCTGGAGCTGCT
1 CTGCTGGAGCTGCT
1989694 TTTGCGTGTT
Statistics
Matches: 160, Mismatches: 27, Indels: 47
0.68 0.12 0.20
Matches are distributed among these distances:
17 2 0.01
18 82 0.51
19 31 0.19
20 1 0.01
21 12 0.08
22 12 0.08
24 4 0.03
25 16 0.10
ACGTcount: A:0.07, C:0.24, G:0.39, T:0.30
Consensus pattern (18 bp):
CTGCTGGAGCTGCTGCTG
Found at i:1989576 original size:31 final size:30
Alignment explanation
Indices: 1989523--1989581 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
1989513 TGCAGTCGCT
* * *
1989523 GCTGGAGTTGCTGCTGCTGTTGCGTGCTGGA
1 GCTGCAGTCGCTGCTGCAGTTGC-TGCTGGA
*
1989554 GCTGCAGTCGCTGCTGGAGTTGCTGCTG
1 GCTGCAGTCGCTGCTGCAGTTGCTGCTG
1989582 CTGTTGCGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 5 0.21
31 19 0.79
ACGTcount: A:0.07, C:0.22, G:0.41, T:0.31
Consensus pattern (30 bp):
GCTGCAGTCGCTGCTGCAGTTGCTGCTGGA
Found at i:1990047 original size:26 final size:26
Alignment explanation
Indices: 1990013--1990128 Score: 205
Period size: 26 Copynumber: 4.5 Consensus size: 26
1990003 AATTTTTATG
* *
1990013 CTTTCCCATGCTGCATTTTTTATTTG
1 CTTTCCCATGCTGCATTTTCTATTTC
*
1990039 CTTTCCCATGCTGCATTTTTTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
1990065 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
1990091 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
1990117 CTTTCCCATGCT
1 CTTTCCCATGCT
1990129 ATAAGTTTTC
Statistics
Matches: 88, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 88 1.00
ACGTcount: A:0.11, C:0.29, G:0.09, T:0.51
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTCTATTTC
Found at i:1990064 original size:21 final size:22
Alignment explanation
Indices: 1990000--1990115 Score: 79
Period size: 26 Copynumber: 4.6 Consensus size: 22
1989990 TGTCTCCAAT
*
1990000 TGCAATTTTTATGCTTTCCCATGC
1 TGCATTTTTTAT--TTTCCCATGC
1990024 TGCATTTTTTATTTGCTTTCCCATGC
1 TGCATTTTTTA--T--TTTCCCATGC
1990050 TGCATTTTTTATTTCCTTTCCCATGC
1 TGCATTTTTTA--T--TTTCCCATGC
*
1990076 TGCATTTTCTATTTCCTTTCCCATGC
1 TGCATTTT-T-TAT--TTTCCCATGC
*
1990102 TGCATTTTCTATTT
1 TGCATTTTTTATTT
1990116 CCTTTCCCAT
Statistics
Matches: 83, Mismatches: 5, Indels: 10
0.85 0.05 0.10
Matches are distributed among these distances:
22 2 0.02
24 12 0.14
26 67 0.81
27 1 0.01
28 1 0.01
ACGTcount: A:0.13, C:0.25, G:0.09, T:0.53
Consensus pattern (22 bp):
TGCATTTTTTATTTTCCCATGC
Found at i:1990300 original size:6 final size:6
Alignment explanation
Indices: 1990260--1990292 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
1990250 ATTATTATTT
1990260 TTTGAA TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTTGAA TTT
1990293 TTAATTTTTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.55
Consensus pattern (6 bp):
TTTGAA
Found at i:1990660 original size:157 final size:158
Alignment explanation
Indices: 1990423--1990749 Score: 439
Period size: 157 Copynumber: 2.1 Consensus size: 158
1990413 ATGAAGTCTT
* * * *
1990423 CTCATTAGGATACACGATATTGATATTTTGGCTTTACAAGAAAGGCATTTTTCCCACGAATTTTT
1 CTCATTAGGATACACGATATTGATACTTTGGCTTTACAACAAAGACATTTTTCCCACCAATTTTT
*
1990488 GTAAAGTCTATGTTCGTGC-CTCAAATGCA-ACAAACTTGGATTCTACTAATGATATTCGC-TCA
66 GTAAAGTCTATGTTCGTGCTC-CAAATG-AGACAAACATGGATTCTACTAATGATATTC-CTTCA
*
1990550 TTTTGTGATTAGGCACTACAAACACATTCTC
128 TTTTGTGATAAGGCACTACAAACACATTCTC
* * *
1990581 CTCATTAGGATACACGATA-TGATGCTTTGGTTTTGCAACAAAGAC-TTTCTTCCCACCAATTTT
1 CTCATTAGGATACACGATATTGATACTTTGGCTTTACAACAAAGACATTT-TTCCCACCAATTTT
* * *
1990644 TGTAAAGTCTATGTTCGTGCTCCAAATGAGACAAACATGGATTCTAGTAATGATCTTCCTTCTTT
65 TGTAAAGTCTATGTTCGTGCTCCAAATGAGACAAACATGGATTCTACTAATGATATTCCTTCATT
* *
1990709 TTGTGATAAGGTACTATAAACACATTCTC
130 TTGTGATAAGGCACTACAAACACATTCTC
* *
1990738 CACATTGGGATA
1 CTCATTAGGATA
1990750 AATGATACTG
Statistics
Matches: 149, Mismatches: 16, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
156 5 0.03
157 124 0.83
158 20 0.13
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (158 bp):
CTCATTAGGATACACGATATTGATACTTTGGCTTTACAACAAAGACATTTTTCCCACCAATTTTT
GTAAAGTCTATGTTCGTGCTCCAAATGAGACAAACATGGATTCTACTAATGATATTCCTTCATTT
TGTGATAAGGCACTACAAACACATTCTC
Found at i:1991231 original size:158 final size:158
Alignment explanation
Indices: 1990386--1992356 Score: 807
Period size: 158 Copynumber: 12.5 Consensus size: 158
1990376 TACTAATCCC
* * * * * **
1990386 CATTCTTTTTAGGATTAGGCACCATAAATGA-AGTCTTCTCATTAGGATACACGATATTGATATT
1 CATTCTTTTTATGATTAGGCACTATAAA-CACATTCTTCTCATTAGGATACATGATATTGATGCT
* * * * *
1990450 TTGGCTTTACAAGAAAGGCATTT-TTCCCACGAATTTTTGTAAAGTCTATGTTCGTGCCTCAAAT
65 TTGGTTTTGCAAGAAAGG-ATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* * * * *
1990514 GCA-ACAAACTTGGATTCTACTAATGATATT
129 -AAGACAAACATGGATTCTAGTAAAGATCTT
** * * * * *
1990544 CGCTCATTTTGTGATTAGGCACTACAAACACATTCTCCTCATTAGGATACACGATA-TGATGCTT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
* * *
1990608 TGGTTTTGCAACAAA-GACTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGTG-CTCCAAAT
66 TGGTTTTGCAAGAAAGGA-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCT-CAAAT
* *
1990671 GAGACAAACATGGATTCTAGTAATGATCTT
129 AAGACAAACATGGATTCTAGTAAAGATCTT
* * * * * * * * * *
1990701 CCTTCTTTTTGTGATAAGGTACTATAAACACATTCTCCACATTGGGATAAATGATACTGATGATT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
* * ** * ** * * * * *
1990766 T-CTTTTGCATGGAAATCATTTTTTTGC-CCTATTTTCCT-TAAAAT-TGAAGTTTATCCCTTAA
66 TGGTTTTGCA-AGAAAGGATTTCTTCCCACCAATTTT--TGTAAAGTCT-AAGTTTGTGCCTCAA
* * *
1990827 ATAAGACAAGCATCGATTCTCGTAACA-ATC-T
127 ATAAGACAAACATGGATTCTAGTAA-AGATCTT
* * * * * * *
1990858 CTATTCTTTTTAAGAATT-GGAAGCCA-AAATACATTGCCT-TCGTTAGGATACATGACATTGAT
1 C-ATTCTTTTTATG-ATTAGGCA-CTATAAACACATT-CTTCTCATTAGGATACATGATATTGAT
* * * ** * * * * *
1990920 ACTTTGATGTTGCAAGAAAAGCTTTTGTTTCCACC-GTTTTTGATAGAA-TCGAAGTGTGT-CTC
62 GCTTTGGTTTTGCAAG-AAAGGATTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTTGTGC-C
* * * * ** **
1990982 TTAAATAGGACAAACAT--ACTC-ACTCTA-ATCCC
123 TCAAATAAGACAAACATGGATTCTAGTAAAGATCTT
* * * * *
1991014 CATT-TTTTTGAGGATTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCT
1 CATTCTTTTT-ATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCT
* * *
1991078 TTGGTTTTGCAACAAAGGGTTTCTTCCCACCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATA
65 TTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATA
* *
1991143 AGACAAACATGGATTCTAATAAAGATTTT
130 AGACAAACATGGATTCTAGTAAAGATCTT
* * * * * *
1991172 CATTCTTTTTATGATAAGGCACTATAAACACTTTCTTCTCATTTGGATAAATGACATTGATGATT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
** * ** *** ** * *** * * **
1991237 TTCTTTTTCGTGGAAATCTTTTCTTTGC-CCTATTATCCCTAAAATCAAAGTTCAT-CC-CATGA
66 TGGTTTTGC-AAGAAAGGATTTCTTCCCACCAATT-TTTGTAAAGTCTAAGTTTGTGCCTCA--A
* * * *
1991299 ATCAGACAACCATTGATTCTCGTAACAG-T-TT
127 ATAAGACAAACATGGATTCTAGTAA-AGATCTT
* * * * * * * * *
1991330 CCATTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCT-TCATTAGGGTACATGACATTGATG
1 -CATTCTTTTTATGATTAGGCA-CTATAAACACATT-CTTCTCATTAGGATACATGATATTGATG
* * * * * *
1991393 CTTTGGTGTTGCAAGAAAAGATTCTCTTTCCACC-GTTTTTCATAGAA-TCAAAGTTTGT-CTCT
63 CTTTGGTTTTGCAAGAAAGGATT-TCTTCCCACCAATTTTT-GTA-AAGTCTAAGTTTGTGC-CT
* * * * * * *
1991455 TAAATAGGTCAAATC-TGAATACTCA-TACTA-ATCCAT
124 CAAATAAGACAAA-CATGGATTCT-AGTA-AAGAT-CTT
* * * ** * * * **
1991491 -ATTCTTTTCAGGATTAGGCACCATATAGGA-AGTCTTCTCATTAGGATACACGATATTAATATT
1 CATTCTTTTTATGATTAGGCACTATA-AACACATTCTTCTCATTAGGATACATGATATTGATGCT
* *
1991554 TTGGTTTCGCAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCTCAAAT
65 TTGGTTTTGCAAGAAAGG-ATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* * *
1991618 GAGACAAACATAGATTCTAGTAATGATCTT
129 AAGACAAACATGGATTCTAGTAAAGATCTT
* * * *
1991648 CATTCTTTTTGTGATTAGGCACTATAAACACATTCTTCTCATTGGGATA-TTCGATATTGACGCT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACAT-GATATTGATGCT
** * * * * * * *
1991712 TTGGTTTCACAACAAAGGCTTTTTTCCCACCAATGTTTCTAAAGTCTAAGTTCGTGCCTCAAATG
65 TTGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATA
* * *
1991777 AGACAAACATAGATTCGAGTAATGATCTT
130 AGACAAACATGGATTCTAGTAAAGATCTT
* * * * ** * * *
1991806 CATTCTTTTTGTGATAAGGCACTATAAACAAATTCTTCGCATTAGGGCAAATGACATTGATGATT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
** * *** * * * ** * * *** *
1991871 TTCTTTTGCATGGAAATCTTTTCTTTGCCAACTA-TCCT-TAAAATCAAAG-TTCACCCTTAAAT
66 TGGTTTTGCA-AGAAAGGATTTC-TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAT
* * * *
1991933 AAGACAAGCATCGAATCTCA-TAACAG-TCTC
129 AAGACAAACATGGATTCT-AGTAA-AGATCTT
* * * * * * * * * * *
1991963 CATTCCTTTCAAGATTGGGAAGCCA-AAACACATTCTTTTCATTAGGATAAACGACATTGATGAT
1 CATTCTTTTTATGATTAGGCA-CTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCT
* * ** * * * *
1992027 TTGGTGTCGCAAGAAAAGCTTTTCTTCCCATCAA-TTTTGATAGAA-TCAAAGTTTGT-CTTTTA
65 TTGGTTTTGCAAG-AAAGGATTTCTTCCCACCAATTTTTG-TA-AAGTCTAAGTTTGTGC-CTCA
* * * * * * **
1992089 AA-AAAATAAAGATGAATACTCA-TACTA-ATCCC
126 AATAAGACAAACATGGATTCT-AGTA-AAGATCTT
* * * * * * ** **
1992121 CATCCTTTTCAGGATTAGGCACCATAAACATAGTCTTCGAATTAGGATACACAAT-TTGATGCTT
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
* * * * * *
1992185 TGGTTTTGCAACAGAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTACCTCGAATGA
66 TGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAA
*
1992250 GGCAAACATGGATTCTAGTAATA-ATCTT
131 GACAAACATGGATTCTAGTAA-AGATCTT
* * * * * *
1992278 CATTCTTTTTGTGATTAGGCACAATAAACATATTC-GC-CATGTCAGGATATATGATATTGATGA
1 CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCAT-T-AGGATACATGATATTGATGC
* *
1992341 TTT-TTTTTGCATGAAA
64 TTTGGTTTTGCAAGAAA
1992357 ATCTTTTTTT
Statistics
Matches: 1346, Mismatches: 371, Indels: 193
0.70 0.19 0.10
Matches are distributed among these distances:
153 2 0.00
154 54 0.04
155 63 0.05
156 56 0.04
157 343 0.25
158 528 0.39
159 270 0.20
160 28 0.02
161 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
CATTCTTTTTATGATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTT
TGGTTTTGCAAGAAAGGATTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAATAA
GACAAACATGGATTCTAGTAAAGATCTT
Found at i:1991670 original size:476 final size:471
Alignment explanation
Indices: 1990556--1991696 Score: 1522
Period size: 472 Copynumber: 2.4 Consensus size: 471
1990546 CTCATTTTGT
* * * * *
1990556 GATTAGGCACTACAAACACATTCTCCTCATTAGGATACACGATA-TGATGCTTTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
* * *
1990620 AAAGACTTTCTTCCCACCAATTTTTGTAAAGTCTATGTTCGT-GCTCCAAATGAGACAAACATGG
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCT-CAAATGAGACAAACATGG
* * * *
1990684 ATTCTAGTAATGATCTTCCTTCTTTTTGTGATAAGGTACTATAAACACATTCTCCACATTGGGAT
130 ATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTTCTCATTGGGAT
* * * **
1990749 AAATGATACTGATGATTTCTTTTGCATGGAAATCATTTTTTTGCCCTATTTTCCTTAAAATTGAA
195 AAATGACACTGATGATTTCTTTTGCATGGAAATCATTTTTTTGCCCTATTATCCCTAAAATCAAA
* * * * * *
1990814 GTTTATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAATCTCTATTCTTTTTAAGAATTGGA
260 GTTCATCCCATAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCCTTTCAAGAATTGGA
* * *
1990879 AGCCAAAATACATTGCCTTCGTTAGGATACATGACATTGATACTTTGATGTTGCAAGAAAAGCTT
325 AGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATACTTTGATGTTGCAAGAAAAGATT
* * * *
1990944 TTGTTTCCACCGTTTTTGATAGAATCGAAGTGTGTCTCTTAAATAGGACAAACATACTCACTCTA
390 CTCTTTCCACCGTTTTTCATAGAATCAAAGTGTGTCTCTTAAATAGGACAAACATACTCACTCTA
* * *
1991009 ATCCCCATTTTTTTGAG
455 ATCCACATTCTTTTCAG
* *
1991026 GATTAGGCACCATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
* * * *
1991091 AAAGGGTTTCTTCCCACCAATTTCTGTAAAGTCTAAGTTTGTGCCTCAAATAAGACAAACATGGA
66 AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCTCAAATGAGACAAACATGGA
* * * * * *
1991156 TTCTAATAAAGATTTTCATTCTTTTTATGATAAGGCACTATAAACACTTTCTTCTCATTTGGATA
131 TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTTCTCATTGGGATA
* * *
1991221 AATGACATTGATGATTTTCTTTTTCGTGGAAATC-TTTTCTTTGCCCTATTATCCCTAAAATCAA
196 AATGACACTGATGA-TTTCTTTTGCATGGAAATCATTTT-TTTGCCCTATTATCCCTAAAATCAA
* * * * *
1991285 AGTTCATCCCATGAATCAGACAACCATTGATTCTCGTAACAGTTTCCATTCCTTTCAAG-ATTGG
259 AGTTCATCCCATAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCCTTTCAAGAATT-G
* * *
1991349 GAAGCCAAAACACATTGCCTTCATTAGGGTACATGACATTGATGCTTTGGTGTTGCAAGAAAAGA
323 GAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTGATACTTTGATGTTGCAAGAAAAGA
* *
1991414 TTCTCTTTCCACCGTTTTTCATAGAATCAAAGTTTGTCTCTTAAATAGGTCAAATCTGAATACTC
388 TTCTCTTTCCACCGTTTTTCATAGAATCAAAGTGTGTCTCTTAAATAGGACAAA-C---ATACTC
*
1991479 A-TACTAATCCATATTCTTTTCAG
449 ACT-CTAATCCACATTCTTTTCAG
** * ** *
1991502 GATTAGGCACCATATAGGA-AGTCTTCTCATTAGGATACACGATATTAATATTTTGGTTTCGCAA
1 GATTAGGCACCATA-AACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAA
* *
1991566 GAAAGGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCTCAAATGAGACAAACATA
65 CAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCTCAAATGAGACAAACATG
*
1991630 GATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCTTCTCATTGGGA
129 GATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTTCTCATTGGGA
1991695 TA
194 TA
1991697 TTCGATATTG
Statistics
Matches: 579, Mismatches: 80, Indels: 18
0.86 0.12 0.03
Matches are distributed among these distances:
470 37 0.06
471 149 0.26
472 196 0.34
473 1 0.00
475 1 0.00
476 190 0.33
477 5 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (471 bp):
GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTTGCAAC
AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTGTGGCTCAAATGAGACAAACATGGA
TTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTATAAACACATTCTTCTCATTGGGATA
AATGACACTGATGATTTCTTTTGCATGGAAATCATTTTTTTGCCCTATTATCCCTAAAATCAAAG
TTCATCCCATAAATAAGACAACCATCGATTCTCGTAACAATCTCCATTCCTTTCAAGAATTGGAA
GCCAAAACACATTGCCTTCATTAGGATACATGACATTGATACTTTGATGTTGCAAGAAAAGATTC
TCTTTCCACCGTTTTTCATAGAATCAAAGTGTGTCTCTTAAATAGGACAAACATACTCACTCTAA
TCCACATTCTTTTCAG
Found at i:1992340 original size:472 final size:470
Alignment explanation
Indices: 1991701--1992661 Score: 1188
Period size: 472 Copynumber: 2.0 Consensus size: 470
1991691 GGGATATTCG
* *
1991701 ATATTGACGCTTTGGTTTCACAACAAAGGCTTTTTTCCCACCAATGTTTCTAAAGTCTAAGTTCG
1 ATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATGTTTCTAAAGTCTAAGTTCG
* * *
1991766 TGCCTCAAATGAGACAAACATAGATTCGAGTAATGATCTTCATTCTTTTTGTGATAAGGCACTAT
66 TACCTCAAATGAGACAAACATAGATTCGAGTAATAATCTTCATTCTTTTTGTGATAAGGCACAAT
* * *
1991831 AAACAAATTCTTCGCATTAGGGCAAATGACATTGATGATTTTCTTTTGCATGGAAATCTTTTCTT
131 AAACAAATTCTGCGCATTAGGACAAATGACATTGATGATTTT-TTTTGCATGAAAATCTTTTCTT
1991896 TGCCA-ACTATCCTTAAAATCAAAGTTCA-CCCTTAAATAAGACAAGCATCGAA-TCTCATAACA
195 TGCCATACTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATC-AATTCTCATAACA
* * * **
1991958 GTCTCCATTCCTTTCAAGATTGGGAAGCC-AAAACACATTCTTTTCATTAGGATAAACGACATTG
259 GCCTCCATCCCTTTCAAGATTGGG-AGCCAAAAACACATACCCTTCATTAGGATAAACGACATTG
1992022 ATGATTTGGTGTCGCAAGAAAAGCTTTTCTTCCCAT-C-AATTTTGATAGAATCAAAGTTTGTCT
323 ATGATTTGGTGTCGCAAGAAAAGCTTTTCTT--CATGCTAATTTTGATAGAATCAAAGTTTGTCT
* *
1992085 TTTAAA-AAAATAAAGATGAATACTCA-TACTAATCCCCATCCTTTTCAGGATTAGGCACCATAA
386 CTCAAATAAAA-AAA-A--AATACTCACT-CTAATCCCCATCCTTTTCAGGATTAGGCA-CATAA
*
1992148 ACATAGTCTTCGAATTAGGATACACA
445 ACATAGTCTTCGAATTAAGATACACA
** * * * *
1992174 AT-TTGATGCTTTGGTTTTGCAACAGAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTTG
1 ATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATGTTTCTAAAGTCTAAGTTCG
* * * * *
1992238 TACCTCGAATGAGGCAAACATGGATTCTAGTAATAATCTTCATTCTTTTTGTGATTAGGCACAAT
66 TACCTCAAATGAGACAAACATAGATTCGAGTAATAATCTTCATTCTTTTTGTGATAAGGCACAAT
* * * * *
1992303 AAACATATTC-GC-CATGTCAGGATATATGATATTGATGATTTTTTTTGCATGAAAATCTTTTTT
131 AAACAAATTCTGCGCAT-T-AGGACAAATGACATTGATGATTTTTTTTGCATGAAAATCTTTTCT
* * * * *
1992366 TTGCCATATTTTTCTTAAAATCAAAGTTTATCCCTTAAATAAGACAAGCATCAATTCTCGTAACA
194 TTGCCATACTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACA
* * * * *
1992431 GCCTCTATCCCTTTCAAGATTGGGATCCAAAAACACATACCCTTCGTTAGGATACATGACATTGA
259 GCCTCCATCCCTTTCAAGATTGGGAGCCAAAAACACATACCCTTCATTAGGATAAACGACATTGA
* * * ** ** *
1992496 TGCTTTGGTGTTGCAAGAAAAGCTTTTGTTTTTGCTGTTTTTGATAGAGTCAAAGTTTGTCTCTC
324 TGATTTGGTGTCGCAAGAAAAGCTTTTCTTCATGCTAATTTTGATAGAATCAAAGTTTGTCTCTC
* * * * *
1992561 AAATAAGACAAACATACTCACTCTAATCCCCATTCTTTTCAGGATTAGGCACATAAGCATAGTCT
389 AAATAAAAAAAAAATACTCACTCTAATCCCCATCCTTTTCAGGATTAGGCACATAAACATAGTCT
*** *
1992626 TCTCGTTAAGATACACG
454 TCGAATTAAGATACACA
*
1992643 ATATTGATGCTTAGGTTTC
1 ATATTGATGCTTTGGTTTC
1992662 GTGACAGAGG
Statistics
Matches: 416, Mismatches: 61, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
469 27 0.06
470 52 0.12
471 29 0.07
472 166 0.40
473 139 0.33
474 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (470 bp):
ATATTGATGCTTTGGTTTCACAACAAAGGCTTTCTTCCCACCAATGTTTCTAAAGTCTAAGTTCG
TACCTCAAATGAGACAAACATAGATTCGAGTAATAATCTTCATTCTTTTTGTGATAAGGCACAAT
AAACAAATTCTGCGCATTAGGACAAATGACATTGATGATTTTTTTTGCATGAAAATCTTTTCTTT
GCCATACTATCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCAATTCTCATAACAGC
CTCCATCCCTTTCAAGATTGGGAGCCAAAAACACATACCCTTCATTAGGATAAACGACATTGATG
ATTTGGTGTCGCAAGAAAAGCTTTTCTTCATGCTAATTTTGATAGAATCAAAGTTTGTCTCTCAA
ATAAAAAAAAAATACTCACTCTAATCCCCATCCTTTTCAGGATTAGGCACATAAACATAGTCTTC
GAATTAAGATACACA
Found at i:1995572 original size:476 final size:474
Alignment explanation
Indices: 1994502--2000762 Score: 7496
Period size: 476 Copynumber: 13.2 Consensus size: 474
1994492 TCTTCTCACC
* * ** *
1994502 AATGAGA-AAGACATGGATTCTAGTAATGACCCTCATTCTTTTTGTGATAACGG-ACTGTAAACA
1 AATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACA
* * * ** * ***
1994565 CATTCTCCTTATTGGGATAAAAGCCATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTTGC
64 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCC
* * * * * *
1994630 TATTATCCTTAAAATCAAAGTTCATCCATTGAATAAGACAAGCAAT-GATTTTCATAACATTCTC
129 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTCTC
* * *
1994694 CATTCTTTTCAAGGTTGGGAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTT
193 CATTCTTTTCAAGATTGGGAA-CCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTT
*
1994759 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGTTTGTCTCTATAA
257 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAA
* * * * *
1994822 ATAAGACAAACATGAATA-CTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAATATA
319 ATAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
* * * **
1994886 GTCTTCCCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCATGA
382 GTCTTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
* *
1994950 ATTTTTGTAAAGTCTAAATTCATGCCTCA
446 ATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
1994979 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * * * * * * * *
1995044 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCTTG
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
1995109 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* *
1995174 TCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTATGACATTAATGCTTTG
196 TCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTTG
* * *
1995238 GTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
259 GTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
1995303 ACAAACATGAATACCTACGCTAATCCCCATTCGTTTCAAAATTAGGCACCATACACAGAGTCTTC
324 ACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * **
1995368 TCATTAGGATACATAATATTAACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTG
388 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
*
1995433 TAAAGTCTAAGTTCGTGCTTCA
453 TAAAGTCTAAGTTCGTGCCTCA
* ** * *
1995455 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * *
1995520 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTA
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * * *
1995585 TTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
1995650 TCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
* * * * *
1995713 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
258 GGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
1995778 GACAAAAAAGAATACTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCG
323 GACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * * *
1995842 TCTCTTTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTAT
386 TCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* *
1995907 TGTAAAGTCTAAGTACGTGACTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * *
1995931 AATGAGAAAAAACATGGATTCTAGTAATAATATTCATTCTTTTTGTGATAAGGG-ACTATAAACA
1 AATGAG-ACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACA
* * * **
1995995 CATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTAC
64 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCC
* * * * *
1996060 TATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTC
129 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTC
* * *
1996125 CATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCT
193 CATTCTTTTCAA-GATTGGGAA-CCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCT
* * * *
1996189 TTGGTGTCAT-CAA-AAAAGCTTTTCTTTCCACCATTTTTGACAAAATCAAAGTTTGTCTCTTAA
256 TTGGTGT--TGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * *
1996252 ATAAGACAAACATGAATA-CTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATA
319 ATAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATA
* * *
1996316 GTCTTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGA
382 GTCTTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
* *
1996380 ATTTTTGTAAAGTCTAAATTCATGCCTCA
446 ATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * **
1996409 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * * * * * *
1996474 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCT
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCT
* * * * *
1996538 GTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * ****
1996603 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGATTTGCGACATTAATGCTTTG
195 TTCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * *
1996668 GTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
259 GTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
1996732 ACAAACATGAATACCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
324 ACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * ** * *
1996797 TCATTAGGATACATAATATTGACGCTTTACTTTTGTGAA-AAAGGCTTTCTTCCCACCAATTTTT
388 TCATTAGGATACATGATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAATTTTT
*
1996861 GTAAAGTCTAAGTTCGTGCTTCA
452 GTAAAGTCTAAGTTCGTGCCTCA
* * * *
1996884 AATGAGACGAACATGGATTCTAGTAATGATAC-GCATTCATTTTGTGATTGGGCACAATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGAT-CTTCATTCTTTTTGTGATTGGGCACTATAAACAC
* * *
1996948 ATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCT
65 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * * * *
1997013 ATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
1997078 TTCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTT
195 TTCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTT
* * *
1997141 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
257 TGGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
1997206 AGACAAAAAAGAATGCTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
322 AGACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * *
1997270 GTCTCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTA
385 TTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATT-
*
1997335 TTT-TAAAGTCTAAGTTCGTGACTCA
449 TTTGTAAAGTCTAAGTTCGTGCCTCA
* * * *
1997360 AATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACAC
* * * * **
1997424 ATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGCAAATCTTTTCTTTGTACT
65 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * ** *
1997489 ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCC
*
1997554 ATTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTT
194 ATTCTTTTCAA-GATTGGGAA-CCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTT
* * *
1997618 TGGTGTCAT-CAA-AAAGGCTTTTCTTTCCATCGCTTTTGACAGAATCAAAGTTTGTCTCTTAAA
257 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
1997681 TAAGACAAACATGAATAGTCATA-CTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAG
320 TAAGACAAACATGAATA--CCTACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
* * *
1997745 TCTTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAA
383 TCTTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAA
* *
1997809 TTTTTGTAAAGTCTAAATTCATGCCTCA
447 TTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * **
1997837 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * * * * * * *
1997902 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
1997967 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * * *
1998032 TCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTG
196 TCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTTG
* * * *
1998096 GTGTTGCGAGAAAAGCTTTCCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
259 GTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
1998161 ACAAACATGAATACCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
324 ACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * **
1998226 ACATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTG
388 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
*
1998291 TAAAGTCTAAGTTCGTGCTTCA
453 TAAAGTCTAAGTTCGTGCCTCA
* ** * *
1998313 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* *
1998378 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGT-ATAAATCTTTTCTTTGCCCT
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGA-AAATCTTTTCTTTGCCCT
* * * * * *
1998442 ATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
1998507 TTCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTT
195 TTCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTT
* * *
1998570 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG-TT-TCTCTTAAATA
257 TGGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
1998633 AGACAAAAAAGAATACTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
322 AGACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * * * *
1998697 GTCTCATTAGGATACACGATATAGATGGTTTGCTTTCACAACAAAGGCTTTCTTCCCACCAATTA
385 TTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTT
**
1998762 TTGTAAAGTCTAAGTTCGTAACTCA
450 TTGTAAAGTCTAAGTTCGTGCCTCA
* * * *
1998787 AATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACAC
* * * **
1998851 ATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACT
65 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * * ** *
1998916 ATTATCCTTAAAATCGAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCC
*
1998981 ATTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTT
194 ATTCTTTTCAA-GATTGGGAA-CCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTT
*
1999045 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAA
257 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
1999108 TAAGACAAACATGAATA-GTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAG
320 TAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
* * *
1999172 TCTTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACAAA
383 TCTTCTCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAA
* *
1999236 TTTTTGTAAAGTCTAAATTCATGCCTCA
447 TTTTTGTAAAGTCTAAGTTCGTGCCTCA
* * **
1999264 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * * * * * * *
1999329 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
1999394 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * * *
1999459 TCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTG
196 TCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTTG
* * *
1999523 GTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
259 GTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * *
1999588 ACAAACATGAATACCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
324 ACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * **
1999653 TCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTG
388 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
*
1999718 TAAAGTCTAAGTTCGTGCTTCA
453 TAAAGTCTAAGTTCGTGCCTCA
* ** * *
1999740 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* *
1999805 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTC-TTT---TG----------C---G---T-
66 TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
1999849 TTTT-CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* *
1999913 TCTTTTCAAGATTGGGAAGCCAAAACACATTG-TCGTCATTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
* * * * * *
1999976 GGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATTTGTCTCTTAAATAA
258 GGTGTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* *
2000041 GACAAACAAGAATACTCATA-CTAA-CCCCTATTCTTTTCAAGATTAGGAACCATAAACATAGTC
323 GACAAACATGAATAC-C-TACCTAATCCCC-ATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * *
2000104 TTCTCATTAAGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCTCAGCAATTT
385 TTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTT
* ** **
2000169 TAGTAAAGTCTAAGTTTATGCCTGT
450 TTGTAAAGTCTAAGTTCGTGCCTCA
* ** **
2000194 AATGAAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAAGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
* * *
2000259 TTC-CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
66 TTCTC-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* *
2000323 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTCC
* * * ** *
2000387 ATTCTTTTCAAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACATGGTATTGATGCTTT
194 ATTCTTTTCAAGATTGGGAA-CCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTT
* ** * * *
2000452 GTTGTCACAAGAAAAGCTTTTATTTCCA-CTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATA
258 GGTGTTGCAAGAAAAGCTTTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
2000516 AGACAAACTTGAATACTCATA-CTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGA-AGT
322 AGACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGT
** *
2000579 CTTCTCATTAGGATACATGATATTGATATTTTGGTTTCGCAACAAAGGCATTT-TTCCCACAAAT
384 CTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAAT
*
2000643 TTTTGTGAAGTCTAAGTTCGTGCCTCA
448 TTTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * **
2000670 AACGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGA-TCAGCAACTATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGC-ACTATAAACAC
*
2000734 ATTCTCGC-CATTAGGATACATGATATTGA
65 ATTCTC-CTCATTAGGATAAATGATATTGA
2000763 AGCTTTGTTT
Statistics
Matches: 4928, Mismatches: 721, Indels: 271
0.83 0.12 0.05
Matches are distributed among these distances:
453 5 0.00
454 365 0.07
455 15 0.00
456 3 0.00
458 2 0.00
459 1 0.00
462 1 0.00
468 1 0.00
471 1 0.00
472 2 0.00
474 300 0.06
475 543 0.11
476 2152 0.44
477 1268 0.26
478 263 0.05
479 6 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (474 bp):
AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACA
TTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
TCTTTTCAAGATTGGGAACCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTTGGT
GTTGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATACCTACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA
TTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCA
Found at i:1995835 original size:159 final size:158
Alignment explanation
Indices: 1994693--1999832 Score: 1407
Period size: 159 Copynumber: 32.4 Consensus size: 158
1994683 ATAACATTCT
* * * *
1994693 CCATTCTTTTCAAGGTTGGGAACCCA-AAACACATACCCCTCATTAGGATACATGACATT-AATG
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAT-TCCCTCATTAGGATACATGATATTGAA-G
* * * * * * *
1994756 CTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGTTTGTCTCTAT
63 CTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCT-T
*
1994820 AAATAAGACAAACATGAATACTCACACTAATCC
126 AAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * *
1994853 CCATTCTTTTTAGGATTTGGAACCATAAATATAGTCTTCC-CATTAGGATACACT-ATATTGATG
1 CCATTCTTTTCAAGATTAGGAACCATAAACACA-T-TCCCTCATTAGGATACA-TGATATTGAAG
* * * ** * *
1994916 CGTTGGTTTCGCAACAAAAGC-TTTCTTCCCATGAATTTTTG-TAAAGTCTAAA-TTCATGC-CT
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAAAATC-AAAGTTCGT-CTCT
* * * *
1994977 CAAATGAGACAAACATGGAT--TCA-ACTAATGATCT
125 TAAATAAGACAAACATGAATACTCATACT-A--ATCC
* *** * * * *
1995011 TCATTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTA
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGATATTGA--A
* *** * * * * ** * * *
1995075 TCTTCT--TTT-GTGTGAAAATCTTTTCGTT--GCCTTGTTTTCCTTAAAATTAAAGTTCATCCC
62 GCTT-TGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTC
* * * * * * *
1995135 TTAAAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCT
124 TTAAATAAGACAAACAT-GAATACTCAT-ACTAATCC
* * * * * *
1995170 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTATGACATT-AATG
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGATATTGAA-G
* *** ** *
1995233 CTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTA
63 CTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
1995297 AATAAGACAAACATGAATAC-C-TACGCTAATCC
127 AATAAGACAAACATGAATACTCATA--CTAATCC
* * * * * * * *
1995329 CCATTCGTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATT-AACGC
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAA-GC
* * ** * * * * * *
1995393 TTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCA
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTA
* * * * * *
1995455 AATGAGACGAACATGGATTCT-AGTAATGATCC
127 AATAAGACAAACATGAATACTCA-TACTAATCC
* ** * * * * * * *
1995487 GCATTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGA
1 CCATTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGC
** * ** * * * ** * * *
1995551 TTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAG
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* ** * ** *
1995615 ATAAGACAAGCATCTATTCTTGTA--ACAGCC
128 ATAAGACAAACATGAATACTCATACTA-ATCC
* * * * *
1995645 TCCATTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAG
1 -CCATTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGATATTGAAG
* * *
1995709 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAA
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* *
1995774 ATAAGACAAAAAAGAATACTCATACTAATCC
128 ATAAGACAAACATGAATACTCATACTAATCC
* * * * * * * * *
1995805 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCTTTAGGATACACGATATAGATGGT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
* * * * * * * * ** *
1995870 TTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATTG-TAAAGTCTAAGTACGTGACTCAAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTCTCTTAAA
* * * * * **
1995933 TGAGAAAAAACATGGATTCT-AGTAATAATAT
129 TAAG-ACAAACATGAATACTCA-TACTAATCC
* *** * * * * * * * *
1995964 TCATTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGAT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
** * * * ** * * *** * * *
1996029 TTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAAT
* * * * *
1996094 AAGACAAGCAACG-ATTCTCAATAAC-ATTCT
130 AAGACAAAC-ATGAATACTC-AT-ACTAATCC
* *
1996124 CCATTCTTTTCAAGGA-T-GGTAACCCA-AAACACATACCCCTCATTAGGATACATGACATT-AA
1 CCATTCTTTTCAA-GATTAGG-AA-CCATAAACACAT-TCCCTCATTAGGATACATGATATTGAA
* * * *
1996185 TGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAAAATCAAAGTTTGTCTCT
62 -GCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCT
*
1996249 TAAATAAGACAAACATGAATACTCACACTAATCC
125 TAAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * *
1996283 CCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGC
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGATATTGAAGC
* * * * * * *
1996347 GTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTT
* * *
1996408 AAATGAGACAAACATGGAT--TCA-ACTAATGATCT
126 AAATAAGACAAACATGAATACTCATACT-A--ATCC
* *** * * * * *
1996441 TCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTA
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGATATTGA--A
* * *** * * ** * * *
1996505 TC-TT--CTTCTGTGTGAAAATCTTTT-TGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCC
62 GCTTTGGTTTC-GCAAGAAAAGCTTTTCT-TTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCT
* * * * ** * *
1996564 CTTAAAAAAGACAAGCGTCG-ATTCTTGTAAC-AGTCT
123 CTTAAATAAGACAAACAT-GAATACTCAT-ACTAATCC
* * * * * **** *
1996600 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGATTTGCGACATT-AATGC
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATACATGATATTGAA-GC
* * *** ** *
1996664 TTTGGTGTT-GCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAA
64 TTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
1996727 ATAAGACAAACATGAATAC-C-TACGCTAATCC
128 ATAAGACAAACATGAATACTCATA--CTAATCC
* * * * * * * *
1996758 CCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACGCT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
** * * * * * * *
1996823 TTACTTTTGTGAA-AAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCA
65 TTGGTTTCG-CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTA
* * * * * * *
1996884 AATGAGACGAACATGGATTCT-AGTAATGATAC
127 AATAAGACAAACATGAATACTCA-TACTAATCC
* ** * * * * * * *
1996916 GCATTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGA
1 CCATTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGC
** * ** * * * ** * * *
1996980 TTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAG
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* ** ** *
1997044 ATAAGACAAGCATCTATACTTGTA--ACAGCC
128 ATAAGACAAACATGAATACTCATACTA-ATCC
* * * * *
1997074 TCCATTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAG
1 -CCATTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGATATTGAAG
* * *
1997138 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAA
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* * *
1997203 ATAAGACAAAAAAGAATGCTCATACTAATCC
128 ATAAGACAAACATGAATACTCATACTAATCC
* * * * * * * *
1997234 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
* * * * * * ** *
1997299 TTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATTT--TAAAGTCTAAGTTCGTGACTCAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATT-TTTGATAAAATCAAAGTTCGTCTCTTAA
* * * * *
1997361 ATGAGAAAAACAT-AGATTCT-AGTAATAATCT
128 ATAAGACAAACATGA-ATACTCA-TACTAATCC
* *** * * * * * * * *
1997392 TCATTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGAT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
** * * * * ** * * *** * * *
1997457 TTTCTTTTGCATGCAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAAT
* * * * * *
1997522 AAGACAAGCAACG-ATTCTCAAAAAC-ATTCT
130 AAGACAAAC-ATGAATACTC--ATACTAATCC
* * *
1997552 CCATTCTTTTCAAGGA-TGGGAACCCA-AAACACATACCCTTCATTAGGATACATGACATT-AAT
1 CCATTCTTTTCAA-GATTAGGAA-CCATAAACACATTCCC-TCATTAGGATACATGATATTGAA-
* * * * ** * * *
1997614 GCTTTGGTGTCATCAA-AAAGGCTTTTCTTTCCATCGCTTTTGACAGAATCAAAGTTTGTCTCTT
62 GCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTT
*
1997678 AAATAAGACAAACATGAATAGTCATACTAATCC
126 AAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * *
1997711 CCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGC
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGATATTGAAGC
* * * * * * *
1997775 GTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTT
* * *
1997836 AAATGAGACAAACATGGAT--TCA-ACTAATGATCT
126 AAATAAGACAAACATGAATACTCATACT-A--ATCC
* *** * * * * *
1997869 TCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTA
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGATATTGA--A
* *** * * * ** * * *
1997933 TCTTCT--TTT-GTGTGAAAATCTTTTCGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCCC
62 GCTT-TGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTC
* * * * * * *
1997993 TTAAAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCT
124 TTAAATAAGACAAACAT-GAATACTCAT-ACTAATCC
* * * * * * *
1998028 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATG
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGATATTGAA-G
* * * *** ** *
1998091 TTTTGGTGTT-GCGAGAAAAGCTTTCCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTA
63 CTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
1998155 AATAAGACAAACATGAATAC-C-TACGCTAATCC
127 AATAAGACAAACATGAATACTCATA--CTAATCC
* * * * * * * * *
1998187 CCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCACATTAGGATACATAATATTGACGCT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
* * ** * * * * * *
1998252 TTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAA
* * * * * *
1998314 ATGAGACGAACATGGATTCT-AGTAATGATCC
128 ATAAGACAAACATGAATACTCA-TACTAATCC
* ** * * * * * * *
1998345 GCATTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGA
1 CCATTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGC
** * * * ** * *
1998409 TTTTCTTTTGC--GTATAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTT
64 TTTGGTTTCGCAAG-A-AAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTT
* * ** ** *
1998471 AGATAAGACAAGCATCTATACTTGTA--ACAGCC
126 AAATAAGACAAACATGAATACTCATACTA-ATCC
* * * * *
1998503 TCCATTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAG
1 -CCATTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGATATTGAAG
* *
1998567 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT--TCTCTTAA
63 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAA
* *
1998630 ATAAGACAAAAAAGAATACTCATACTAATCC
128 ATAAGACAAACATGAATACTCATACTAATCC
* * * * * * * *
1998661 CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
* * * * * * * * ** *
1998726 TTGCTTTCACAACAAAGGC-TTTCTTCCCACCAATTATTG-TAAAGTCTAAGTTCGTAACTCAAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTCTCTTAAA
* * * * *
1998789 TGAGAAAAACAT-AGATTCT-AGTAATAATCT
129 TAAGACAAACATGA-ATACTCA-TACTAATCC
* *** * * * * * * * *
1998819 TCATTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGAT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
** * * * ** * * *** * * * *
1998884 TTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCGAAGTTCATCCCTTGAAT
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAAT
* * * * * *
1998949 AAGACAAGCAACG-ATTCTCAAAAAC-ATTCT
130 AAGACAAAC-ATGAATACTC--ATACTAATCC
* * *
1998979 CCATTCTTTTCAAGGA-TGGGAACCCA-AAACACATACCCTTCATTAGGATACATGACATT-AAT
1 CCATTCTTTTCAA-GATTAGGAA-CCATAAACACATTCCC-TCATTAGGATACATGATATTGAA-
* * * * * * *
1999041 GCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAAAGTTTGTCTCTT
62 GCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTT
* *
1999105 AAATAAGACAAACATGAATAGTCACACTAATCC
126 AAATAAGACAAACATGAATACTCATACTAATCC
* * * * * * *
1999138 CCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGC
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGATATTGAAGC
* * * * * * *
1999202 GTTGGTTTCGCAACAAAAGC-TTTCTTCCCACAAATTTTTG-TAAAGTCTAAA-TTCATGC-CTC
64 TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTT
* * *
1999263 AAATGAGACAAACATGGAT--TCA-ACTAATGATCT
126 AAATAAGACAAACATGAATACTCATACT-A--ATCC
* *** * * * * *
1999296 TCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTA
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGATATTGA--A
* *** * * * ** * * *
1999360 TCTTCT--TTT-GTGTGAAAATCTTTTCGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCCC
62 GCTT-TGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTC
* * * * * * *
1999420 TTAAAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCT
124 TTAAATAAGACAAACAT-GAATACTCAT-ACTAATCC
* * * * * * *
1999455 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATG
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGATATTGAA-G
* * *** ** *
1999518 TTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTA
63 CTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
1999582 AATAAGACAAACATGAATAC-C-TACGCTAATCC
127 AATAAGACAAACATGAATACTCATA--CTAATCC
* * * * * * * *
1999614 CCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACGCT
1 CCATTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGAAGCT
* * ** * * * * * *
1999679 TTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAA
65 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAA
* * * * * *
1999741 ATGAGACGAACATGGATTCT-AGTAATGATCC
128 ATAAGACAAACATGAATACTCA-TACTAATCC
* ** * * * * *
1999772 GCATTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGA
1 CCATTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGATATTGA
1999833 CGATTTTCTT
Statistics
Matches: 3528, Mismatches: 1138, Indels: 630
0.67 0.21 0.12
Matches are distributed among these distances:
155 13 0.00
156 57 0.02
157 142 0.04
158 1165 0.33
159 1636 0.46
160 455 0.13
161 50 0.01
162 2 0.00
163 8 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACACATTCCCTCATTAGGATACATGATATTGAAGCTT
TGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
AGACAAACATGAATACTCATACTAATCC
Found at i:1998086 original size:953 final size:950
Alignment explanation
Indices: 1994502--2000762 Score: 7630
Period size: 953 Copynumber: 6.6 Consensus size: 950
1994492 TCTTCTCACC
* * * *
1994502 AATGAGA-AAGACATGGATTCTAGTAATGACCCTCATTCTTTTTGTGATAACGGACTGTAAACAC
1 AATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGACTATAAACAC
* * ** * ***
1994566 ATTCTCCTTATTGGGATAAA-AGCCATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTTGC
65 ATTCTCCTCATTAGGATAAATA-ATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCC
* * * * *
1994630 TATTATCCTTAAAATCAAAGTTCATCCATTGAATAAGACAAGCAAT-GATT-TTCATAACATTCT
129 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTT-GTAACAGTCT
* * *
1994693 CCATTCTTTTCAAGGTTGGGAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCT
192 CCATTCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTAATGCT
*
1994758 TTGGTGTCATCAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATTAAAGTTTGTCTCTATAAA
257 TTGGTGTC-TCAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCT-TAAA
* * * * * *
1994823 TAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAATATAGT
320 TAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGT
* * **
1994888 CTTCCCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCATGAATT
385 CTTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATT
* * * *
1994953 TTTGTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCT
450 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * *
1995018 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTT
515 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTT
* * * * * *
1995083 TGTGTGAAAATCTTTTCGTTGCCTTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAA
580 TGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * *
1995148 GCGTCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTT
645 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCAT
* * *** *
1995213 TAGGAT-CTATGACATTAATGCTTTGGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATG
709 TAGGATAC-ATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA
*
1995277 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATTCGTTTC
773 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA--CTAATCCCCATTCTTTTC
* * * * * * * * * **
1995340 AAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTAACGCTTTAGTTTTGTG
836 AAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCA
* *
1995405 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCA
901 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* ** * * *
1995455 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGAT-TGGGCACAATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACAC
* * * *
1995519 ATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCT
65 ATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * *
1995584 ATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
* * * * *
1995649 TTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTT
195 TTCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATT-AATGCTTT
* * * * *
1995713 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTCTCAA-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
1995778 GACAAAAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGT
323 GACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * * * *
1995843 CTCTTTAGGATACACGATATAGATG-GTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTAT
388 CTCATTAGGATACACTATATTGATGCG-TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* * * * *
1995907 TGTAAAGTCTAAGTACGTGACTCAAATGAGAAAAAACATGGATTCTAGTAATAATATTCATTCTT
452 TGTAAAGTCTAAGTTCGTGCCTCAAATGAG-ACAAACATGGATTCTAGTAATGATCTTCATTCTT
* * * *
1995972 TTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTT
516 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTT
* ** * *
1996037 GCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAG
581 GCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* * * * * *
1996102 CAACGATTCTCAATAACATTCTCCATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCA
646 CATCGATTCTC-GTAACAGTCTCCATTCTTTTCAA-GATTGGGAA-CCAAAACACATGCCCTTCA
* *
1996166 TTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGAC
708 TTAGGATACATGACATTAATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
1996230 AAAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTTTTTA
772 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA
* * * *
1996295 GGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAA
837 AGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAA
* * *
1996360 CAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCA
902 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
1996409 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
* * * * * *
1996474 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCT
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCT
* * * *
1996538 GTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCA
* * * * ****
1996603 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGATTTGCGACATTAATGCTTTG
195 TTCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTG
* * * *
1996668 GTGT-TGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAA
260 GTGTCT-C-AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
1996731 GACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTC
323 GACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * ** * *
1996794 TTCTCATTAGGATACA-TAATATTGACGCTTTACTTTTGTGAA-AAAGGCTTTCTTCCCACCAAT
386 TTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAAT
* * *
1996857 TTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATAC-GCATT
449 TTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGAT-CTTCATT
* * * * * *
1996921 CATTTTGTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCT
513 CTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCT
* * *
1996986 TTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGAC
578 TTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGAC
* * * * * *
1997051 AAGCATCTATACTTGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCAT
643 AAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTT
*
1997115 CGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
706 CATTAGGATACATGACATT-AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
1997179 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAATCCCCATTCTTTT
770 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTT
* * * * * *
1997244 CAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTGCTTTCGC
835 CAAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGC
* *
1997309 AACAAAGGCTTTCTTCCCACCAATTATTT-TAAAGTCTAAGTTCGTGACTCA
900 AACAAAGGCTTTCTTCCCACCAATT-TTTGTAAAGTCTAAGTTCATGCCTCA
* * *
1997360 AATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
* * * * **
1997425 TTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGCAAATCTTTTCTTTGTACTA
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * *** *
1997490 TTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCCA
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-TGTAACAGTCTCCA
*
1997555 TTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTT
195 TTCTTTTCAA-GATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTT
* * *
1997619 GGTGTCATCAAAAAGGCTTTTCTTTCCATCGCTTTTGACAGAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTC-TCAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * * *
1997684 GACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTT
323 GACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* *
1997749 CTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTT
388 CTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * * *
1997814 GTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTT
453 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * * * *
1997879 TGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGT
518 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGC
* * * * *
1997944 GTGAAAATCTTTTCGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCG
583 GTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* *
1998009 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAG
648 TCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACC-AAAACACATGCCCTTCATTAG
* * * * * *** *
1998074 GAT-CTGTGACATTAATGTTTTGGTGTTGCGAGAAAAGCTTTCCTTTCCATTGTTTTTGATGGAA
712 GATAC-ATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAA
*
1998138 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAA
776 TCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAG
* * * * * * * * **
1998201 ATTAGGCACCATACACAGAGTCTTCACATTAGGATACATAATATTGACGCTTTAGTTTTGTGACA
839 ATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACA
* *
1998266 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCA
904 AAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* ** * * *
1998313 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGAT-TGGGCACAATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACAC
* * *
1998377 ATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGT-ATAAATCTTTTCTTTGCCC
65 ATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGA-AAATCTTTTCTTTGCCC
* * * * *
1998441 TATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCC
129 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCC
* * * * *
1998506 ATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTT
194 ATTCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATT-AATGCTT
* * *
1998570 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG-TT-TCTCTTAAATA
258 TGGTGTCTCAA-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
1998633 AGACAAAAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCG
322 AGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
1998698 TCTCATTAGGATACACGATATAGATG-GTTTGCTTTCACAACAAAGGCTTTCTTCCCACCAATTA
387 TCTCATTAGGATACACTATATTGATGCG-TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTT
** * * *
1998762 TTGTAAAGTCTAAGTTCGTAACTCAAATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTT
451 TTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTT
* * * *
1998827 TTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTT
516 TTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTT
* ** * * *
1998892 GCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCGAAGTTCATCCCTTGAATAAGACAAG
581 GCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAG
* ** * *
1998957 CAACGATTCTCAAAAACATTCTCCATTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCA
646 CATCGATTCTC-GTAACAGTCTCCATTCTTTTCAA-GATTGGGAA-CCAAAACACATGCCCTTCA
* * * *
1999021 TTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGTTTTTGAC
708 TTAGGATACATGACATTAATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* * *
1999085 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTA
772 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCA
* * * *
1999150 GGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAA
837 AGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAA
* * *
1999215 CAAAAGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAATTCATGCCTCA
902 CAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* * * *
1999264 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
* * * * * * *
1999329 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * *
1999394 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCAT
* * * * * *
1999459 TCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTG
196 TCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATAC-ATGACATTAATGCTTTG
* * *
1999523 GTGT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAA
260 GTGTCT-C-AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
1999587 GACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTC
323 GACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * * * **
1999650 TTCTCATTAGGATACA-TAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATT
386 TTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATT
* * ** *
1999714 TTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCA
450 TTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCT
* * * * *
1999779 TTTTGTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTC-TT
515 TTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTT
*
1999843 T---TG----------C---G---T-TTTT-CTTAAAATCAAAGTTCATCCCTTAGATAAGACAA
580 TGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *
1999887 GCATCTATTCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTG-TCGTCA
645 GCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAACACA-TGCCCTTCA
* *
1999951 TTAGGATACATGACATTGAA-GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTATGAT
708 TTAGGATACATGACATT-AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT
* *
2000015 AGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAA-CCCCTATTCTTTTC
772 AGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCC-ATTCTTTTC
* *
2000079 AAGATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCTTTGGTTTCGCA
836 AAGATTAGGAACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCA
* * * * **
2000144 ACAAAGGCTTTCTTCTCAGCAATTTTAGTAAAGTCTAAGTTTATGCCTGT
901 ACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
* ** *
2000194 AATGAAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAA-GCACTATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA-TAAGGGACTATAAACAC
* *
2000258 ATTC-CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCC
65 ATTCTC-CTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCC
*
2000322 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTC
129 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAG-TCTC
* * * ** *
2000386 CATTCTTTTCAAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACATGGTATTGATGCTT
193 CATTCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTT
* * * * *
2000451 TGTTGTCACAAGAAAAGCTTTTATTTCCA-CTATTTTTGATAGAATCAAAGTTTGCCTCTTAAAT
258 TGGTGTCTCAA-AAAAGCTTTTCTTTCCATC-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* *
2000515 AAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGA-AGT
321 AAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGT
*** *
2000579 CTTCTCATTAGGATACA-TGATATTGATATTTTGGTTTCGCAACAAAGGCATTT-TTCCCACAAA
385 CTTCTCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAA
* * * *
2000642 TTTTTGTGAAGTCTAAGTTCGTGCCTCAAACGCGACAAACATGGATTCTACTAATGATCTTCATT
448 TTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATT
* * * *
2000707 CATTTTGTGATCA-GCAACTATAAACACATTCTCGC-CATTAGGATACATGATATTGA
513 CTTTTTGTGATTAGGC-ACTATAAACACATTCTC-CTCATTAGGATAAATAATATTGA
2000763 AGCTTTGTTT
Statistics
Matches: 4533, Mismatches: 682, Indels: 209
0.84 0.13 0.04
Matches are distributed among these distances:
929 14 0.00
930 722 0.16
931 52 0.01
932 5 0.00
933 1 0.00
936 1 0.00
939 1 0.00
949 3 0.00
950 307 0.07
951 906 0.20
952 522 0.12
953 1503 0.33
954 482 0.11
955 13 0.00
956 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.35
Consensus pattern (950 bp):
AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCAT
TCTTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTAATGCTTTGG
TGTCTCAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
AAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
ATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTA
AAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGT
GATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTG
AAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCG
ATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAACACATGCCCTTCATTAGGATA
CATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGA
ACCATAAACATAGTCTTCTCATTAGGATACACAATATTGATGCTTTGGTTTCGCAACAAAGGCTT
TCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCA
Found at i:2000590 original size:159 final size:159
Alignment explanation
Indices: 1999909--2000620 Score: 493
Period size: 159 Copynumber: 4.5 Consensus size: 159
1999899 GTAACAGTCT
* * *
1999909 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACA-T-TGTCGTCATTAGGATACATGACATTGAA
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGTCT-TC-TCATTAGGATACATGATATTGAT
* * * * *
1999971 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATT-TGTCTCTT
63 GCTTT-GTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2000035 AAATAAGACAAACAAGAATACTCATACTAA-CC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * *
2000067 CCTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGC
1 CC-ATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGC
* * * * *
2000132 TTTGGTTTCGCAACAAAGGC-TTTC-TTCTCAGCAATTTTAG-TA-AAGTCTAAGTTTATGCCT-
65 TTT-GTTTCGCAAGAAAAGCTTTTCTTTC-CA-CTATTTTTGATAGAA-TCAAAG-TTATGCCTC
* * * * * *
2000192 GT-AATGAA-ACAAACATGGATTCT-AGTAATGATCT
125 TTAAAT-AAGACAAACATGAATACTCA-TACTAATCC
* * ** * * * * * * * *
2000226 TCATTAATTTT-GTGATTAAGCACTATAAACACATTCCTCTCATTAAGATAAATAATATTGATGA
1 CCATT-CTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATG-
* * * * * *** *
2000290 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT-CC-CTT
64 CTTTGTTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTTTGATAGAATCAAAGTT-ATGCCTCTT
* * * *
2000352 AAATAAGACAAGCATCG-ATTCTTGCA-AC-GATCT
127 AAATAAGACAAACAT-GAATAC-T-CATACTAATCC
* * * *
2000385 CCATTCTTTTCAAGATTGGGAAGCGA-AAACACATTCCCTTC-C-TTAGGATACATGGTATTGAT
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGAT
* *
2000447 GCTTTGTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTT-TGCCTCTT
63 GCTTTGTT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2000511 AAATAAGACAAACTTGAATACTCATACTAATCC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * **
2000544 CCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCTCATTAGGATACATGATATTGATAT
1 CCATTCTTTTCAAGATTAGGAACCATAAAC-ACAGTCTTCTCATTAGGATACATGATATTGATGC
2000608 TTTGGTTTCGCAA
65 TTT-GTTTCGCAA
2000621 CAAAGGCATT
Statistics
Matches: 424, Mismatches: 87, Indels: 85
0.71 0.15 0.14
Matches are distributed among these distances:
157 13 0.03
158 123 0.29
159 260 0.61
160 22 0.05
161 5 0.01
162 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCT
TTGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCC
Found at i:2004402 original size:159 final size:158
Alignment explanation
Indices: 2003705--2004803 Score: 487
Period size: 159 Copynumber: 6.9 Consensus size: 158
2003695 TCGTAATAGT
* * * * * * ** * *
2003705 CTCCATTCTTTTCATGATTGGGAAACAAAAACACATACCCTTCATTAGGATATATGACATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCC-TCATTAGGATACATGATATTGATG
* * * * * ** *
2003770 CTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTCATAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAA
* *
2003835 ATAAGAC-AACTTGAATACTCACACTAATC
130 ATAAGACAAACTTGAATA-TCATACAAATC
* * *
2003864 C-CCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTT-CTCATTAGGATACATGATGTTGA
1 CTCCATTCTTTTT-AAGATTAGGCACCATAAACACA-T-TTCCTCATTAGGATACATGATATTGA
* * * * * *
2003927 TGCTTTGGTTTCGCAA-CAAAGGTTCTAC-TTCCACCAATTTTTG-TAAAGTCTAAGTTCATGCG
63 TGCTTTGGTGTCGCAAGAAAAGCTT-TTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCAT-C-
* * *
2003989 TC--AAATGAGACAAACTTGGAT-TCTAGTA-ATGAT-
124 TCTTAAATAAGACAAACTTGAATATC-A-TACA-AATC
* * ** * * * * *
2004022 CTTCATTAATTTTGCA-ATTATGCACAATAAACACATTCTCCTCACTAGGATAAATGATATTGGT
1 CTCCATT-CTTTTTAAGATTAGGCACCATAAACACATT-TCCTCATTAGGATACATGATATTGAT
* * * * * * * *** *
2004086 GATTTTCGT-TTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAATATCAAAGTTCATC-CT
64 G-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCATCTC-
* * * *
2004148 TTAAAGAAGACAAGCATTG-ATCTTCATA-ACAGT-
126 TTAAATAAGACAAAC-TTGAAT-ATCATACA-AATC
* * * ** *
2004181 CTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATACCCTTCATTAGGATACATGACATTGAT
1 CTCCATTCTTTTTAAGATTAGGCA-CCATAAACACATTTCC-TCATTAGGATACATGATATTGAT
*
2004245 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTA
64 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTA
*
2004310 AGTAAGACAAACTTGAATAATCATACAAATC
129 AATAAGACAAACTTGAAT-ATCATACAAATC
* * *
2004341 CTCC-TTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACA-TTTCCTCATTAGGATACATGATATTGATG
* * * * * * * * * * * *
2004405 TTTTGGTTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTTG-TAAAGTCTAACTTCATGC-CTC
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAAAATCAAAGTTCAT-CTCTT
* * * *
2004467 AAATACGACAAACATGGAT-TCTATTA-ATGAT-
128 AAATAAGACAAACTTGAATATC-A-TACA-AATC
* ** * * * * * *
2004498 CTTCATTCTTTTTGTGATTAGGCGCTATAAACATATTCTCCTCAGTATGATGA-ATGATATCGAT
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACATT-TCCTCATTAGGAT-ACATGATATTGAT
* ** * * * * * * *** *
2004562 GTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCA-TATTTTCCTTAAAATCAAAGTTCATCCCT
64 GCTTTGGTGTCGCA-AGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCATCTCT
* ** * * * * *
2004625 TAAAAAAGACAGGCATCGATTCTCGTAAAAAT-
127 TAAATAAGACAAAC-TTGAATATCATACAAATC
* * * ** * * * * *
2004657 CTCCATTCTTTTCAAGATTGGGAAATAAAAACACA-TACCTTGATTAGGATATATGACATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCC-TCATTAGGATACATGATATTGATG
* * * * * ** *
2004721 CTTTAGTGTCGCGAGTAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAA
2004786 ATAAGACAAACTTGAATA
130 ATAAGACAAACTTGAATA
2004804 CTCTCACTAA
Statistics
Matches: 685, Mismatches: 198, Indels: 116
0.69 0.20 0.12
Matches are distributed among these distances:
156 4 0.01
157 23 0.03
158 281 0.41
159 344 0.50
160 29 0.04
161 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCCTCATTAGGATACATGATATTGATGC
TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAA
TAAGACAAACTTGAATATCATACAAATC
Found at i:2004501 original size:476 final size:474
Alignment explanation
Indices: 2003602--2004835 Score: 1669
Period size: 476 Copynumber: 2.6 Consensus size: 474
2003592 TGAGCTTTCA
* *
2003602 ATATTGATGATTTTCTTTTGCGA-GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTAAAGTT
1 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * *
2003666 CAT-CTCTTAAAAAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAA
65 CATCCT-TTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAA
2003730 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
129 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * *
2003795 CTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGAC-AACTTGAATACTCACAC
194 CTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATAC
* * * *
2003859 TAATCCCCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACATGATGT
259 TAATCCCC-TTCTTTTT-AGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATAT
* * *
2003924 TGATGCTTTGGTTTCGCAACAAAGGTTCTACTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCG
322 TGATGCTTTGGTTTCACAACAAAGGTTCTA-TTCCACCAATTTTTGTAAAGTCTAACTTCATGCC
* *
2003989 TCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATGCACAATAAAC
386 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAAC
2004054 ACATTCTCCTCACTAGGATAAATG
451 ACATTCTCCTCACTAGGATAAATG
* * * *
2004078 ATATTGGTGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
2004143 ATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGC
66 ATCCTTTAAAAAAGACAAGCATCGATTC-TCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * *
2004207 CAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
* * ** * * * *
2004272 TTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACTTGAATAATCATACA
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACT
*
2004337 AATCCTCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTG
260 AATCC-CCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATATTG
* ** * *
2004402 ATGTTTTGGTTTCACATGAAAGGCATT-T-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCATGCC
324 ATGCTTTGGTTTCACAACAAAGG--TTCTATT-CCACCAATTTTTGTAAAGTCTAACTTCATGCC
* ** ** * *
2004465 TCAAAT-ACGACAAACATGGATTCTATTAATGATCTTCATTCTTTTTGTGATTAGGCGCTATAAA
386 TCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAA
* * * *
2004529 CATATTCTCCTCAGTATGATGAATG
450 CACATTCTCCTCACTAGGATAAATG
* * *
2004554 ATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCATATTTTCCTTAAAATCAAAGTT
1 ATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * * *
2004618 CATCCCTTAAAAAAGACAGGCATCGATTCTCGTAAAAATCTCCATTCTTTTCAAGATTGGGAAAT
65 CATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * *
2004683 AAAAACACATA-CCTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
2004747 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTC-TCAC
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCAT-AC
* *
2004811 TAATCCGCATTCTTTTCAGGATTAG
259 TAATCC-CCTTCTTTTTAGGATTAG
2004836 TGATGAAAAC
Statistics
Matches: 658, Mismatches: 88, Indels: 25
0.85 0.11 0.03
Matches are distributed among these distances:
474 1 0.00
475 129 0.20
476 489 0.74
477 35 0.05
478 4 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
ATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAACA
AAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCT
TTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACTA
ATCCCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATATTGAT
GCTTTGGTTTCACAACAAAGGTTCTATTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAACACATT
CTCCTCACTAGGATAAATG
Found at i:2006480 original size:12 final size:11
Alignment explanation
Indices: 2006458--2006533 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2006448 AGAGAAAGAA
*
2006458 GAGAGAGGAGG
1 GAGATAGGAGG
2006469 GATGATAGGAGG
1 GA-GATAGGAGG
*
2006481 AGAGACAGGA--
1 -GAGATAGGAGG
*
2006491 GAGATAGTA--
1 GAGATAGGAGG
2006500 GAGATAGGAGG
1 GAGATAGGAGG
2006511 GATGATAGGAGG
1 GA-GATAGGAGG
*
2006523 AGAGACAGGAG
1 -GAGATAGGAG
2006534 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2006490 original size:24 final size:24
Alignment explanation
Indices: 2006457--2006542 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2006447 AAGAGAAAGA
*
2006457 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2006481 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2006499 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2006523 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2006543 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2006509 original size:42 final size:42
Alignment explanation
Indices: 2006448--2006566 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2006438 TAGCCCTCAA
* *
2006448 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2006490 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2006532 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2006567 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2007924 original size:154 final size:157
Alignment explanation
Indices: 2007563--2007927 Score: 382
Period size: 158 Copynumber: 2.3 Consensus size: 157
2007553 ATTAGGCATC
* * * * * * ** * * *
2007563 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCT
1 ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
* *
2007628 TCCCACCAATTATTGTAAAGTCTAAGTTCGCGCCTCAAATAAGACAAACATGAAATCTAGTAATG
66 TCCCACCAATTATTGTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAA-G
**
2007693 ATCTTTTTTCTTTTTGTGATAAGGCACT
130 ATCTTCATTCTTTTTGTGATAAGGCACT
* * ** *
2007721 ATAAACACATTCTCCTCATTAGGATACATGATTTTGATATTTTGGTTTTGCAACAAAGGCTTTCA
1 ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
* * * * ** * *
2007786 TCTCGCCAATT-TTGGTAAAGTCTAAGTTCATGCC-CAAAGGAGACAAATGTGTATTCTAGT-A-
66 TCCCACCAATTATT-GTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAAG
*
2007847 ATCTTCATTGTTTTTGTGATAAGGCACT
130 ATCTTCATTCTTTTTGTGATAAGGCACT
*
2007875 ATAAACACATTCTCCTTATTAAGG-TAAAAGACATTGATGATTTT-CTTTTGCAA
1 ATAAACACATTCTCCTCATT-AGGATAAAAGACATTGAT-ATTTTGCTTTTGCAA
2007928 GGAAATCTTT
Statistics
Matches: 177, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
154 62 0.35
155 8 0.05
156 1 0.01
157 22 0.12
158 84 0.47
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (157 bp):
ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
TCCCACCAATTATTGTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAAGA
TCTTCATTCTTTTTGTGATAAGGCACT
Found at i:2010202 original size:158 final size:157
Alignment explanation
Indices: 2010029--2010375 Score: 471
Period size: 157 Copynumber: 2.2 Consensus size: 157
2010019 TTCTTTTCAG
* * * * *
2010029 GATTAGGCACCATAAATGA-ATTTTTCTCTTTAGGATACACGATATTGATGTTTTGGTTTCACAA
1 GATTAGGCACTATAAA-CACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAA
* * * * **
2010093 GAAAGGCATTTTTCCCAACTATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGCGACAAACATGG
65 CAAAGGCATTTTTCCCAACGATTTTT-GAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGG
2010158 ATTCTACCAATGATCTTCATTCATTTTGT
129 ATTCTACCAATGATCTTCATTCATTTTGT
* *
2010187 GATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAC
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAC
* ** * *
2010252 AAAGGCTTTTTTTGCACCGATTTTTGAAATTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
66 AAAGGCATTTTTCCCAACGATTTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
** *
2010317 TCTAGTAATGATCTTCATTCTTTTTGT
131 TCTACCAATGATCTTCATTCATTTTGT
*
2010344 GATTAGGCACTATAAACACATTCTCCTCATTA
1 GATTAGGCACTATAAACACATTCTTCTCATTA
2010376 TGATGAATGA
Statistics
Matches: 166, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
157 91 0.55
158 75 0.45
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (157 bp):
GATTAGGCACTATAAACACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAC
AAAGGCATTTTTCCCAACGATTTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
TCTACCAATGATCTTCATTCATTTTGT
Found at i:2010348 original size:157 final size:155
Alignment explanation
Indices: 2009574--2010389 Score: 548
Period size: 158 Copynumber: 5.2 Consensus size: 155
2009564 CCATAAATAG
* * * * *
2009574 TCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCAC-AGCAAAGGC-CTTTTCCCACCAA
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGGCTTTTTTTCCACCTA
* * * *
2009637 TTTTGTTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAACAATCTTCATT
65 TTTT-TGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATT
2009702 CTTTTTGTGATTAGGCACTATAAACACAT
127 CTTTTTGTGATTAGGCACTATAAACACAT
* * * ** * ** * * *
2009731 T-TTCTTCATTAGGATAAATGACATTGATGATTTTTTTTTGGCTTGGAAA-TCATTTCTTTAC-C
1 TCTTC-TCATTAGGATACATGATATTGATG-CTTTGGTTTCGC-AAGAAAGGC-TTTTTTTCCAC
* ** * ** ** * * *
2009793 CTATTTTCCTTAATA-TGAAAGTTC-ATCCCTTGAATAAGACAGGCATTGATCCTCATAACAGTC
62 CTATTTT--TGAA-AGTCTAAGTTCGA-GCCTCAAATAAGACAAACATGGATTCT-ATAA-AATC
* * * *
2009856 TCCATTCTTTTTAG-GATTGGGAAACCA-AAACACAT
121 TTCATTCTTTTT-GTGATTAGG-CACTATAAACACAT
* * * * * * * * *
2009891 AC-CCTTCGTTAGGTTACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTCTTCTTTCTACC-
1 TCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCT-TTTTTTCCACCT
* * * * * * *
2009954 ATTTTTGATAAAATC-AATGTTCG-TCTCTTAAATAAGATAAACATGAATACTCATACAAATCCT
64 ATTTTTG--AAAGTCTAA-GTTCGAGC-CTCAAATAAGACAAACATGGATTCT-ATA-AAATCTT
* * *
2010017 CATTCTTTTCAG-GATTAGGCACCATAAATGA-AT
123 CATTCTTTT-TGTGATTAGGCACTATAAA-CACAT
* * * * * * * *
2010050 TTTTCTCTTTAGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCAACTAT
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCTAT
* * ** * *
2010115 TTTTATAAAGTCTAAGTTCGTGCCTCAAATGCGACAAACATGGATTCTACCAATGATCTTCATTC
66 TTTT-GAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATTC
*
2010180 ATTTTGTGATTAGGCACTATAAACACAT
128 TTTTTGTGATTAGGCACTATAAACACAT
* * *
2010208 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTTGCACCGAT
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCTAT
* *
2010273 TTTTGAAATTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCT
66 TTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATTCT
2010338 TTTTGTGATTAGGCACTATAAACACAT
129 TTTTGTGATTAGGCACTATAAACACAT
* *
2010365 TCTCCTCATTATGATGA-ATGATATT
1 TCTTCTCATTAGGAT-ACATGATATT
2010390 TGTTAGGATC
Statistics
Matches: 505, Mismatches: 118, Indels: 72
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 128 0.25
158 146 0.29
159 128 0.25
160 94 0.19
161 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (155 bp):
TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTTTCCACCTAT
TTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTATAAAATCTTCATTCTTT
TTGTGATTAGGCACTATAAACACAT
Found at i:2010701 original size:20 final size:19
Alignment explanation
Indices: 2010678--2010751 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
2010668 CACACCCAGA
*
2010678 TGTATCGATACATGCTGCTT
1 TGTATCGATACATG-TGCAT
* *
2010698 TGTATTGATACATGTTCAT
1 TGTATCGATACATGTGCAT
2010717 TGTATCGATACATG-GACAAAT
1 TGTATCGATACATGTG-C--AT
2010738 TGTATCGATACATG
1 TGTATCGATACATG
2010752 AAATTAGCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.37
20 13 0.28
21 16 0.35
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTGCAT
Found at i:2012471 original size:476 final size:474
Alignment explanation
Indices: 2011572--2012805 Score: 1633
Period size: 476 Copynumber: 2.6 Consensus size: 474
2011562 TGAGCTTTCA
* *
2011572 ATATTGATGATTTTCTTTTGCGA-GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTAAAGTT
1 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * *
2011636 CAT-CTCTTAAAAAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAA
65 CATCCT-TTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAA
2011700 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
129 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * *
2011765 CTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGAC-AACTTGAATACTCACAC
194 CTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATAC
* * * *
2011829 TAATCCCCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACACGATGT
259 TAATCCCC-TTCTTTTT-AGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATAT
* * *
2011894 TGATGCTTTGGTTTCGCAACAAAGGTTCTACTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCG
322 TGATGCTTTGGTTTCACAACAAAGGTTCTA-TTCCACCAATTTTTGTAAAGTCTAACTTCATGCC
* **
2011959 TCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATTCACAATAAAC
386 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAAC
2012024 ACATTCTCCTCACTAGGATAAATG
451 ACATTCTCCTCACTAGGATAAATG
* * * *
2012048 ATATTGGTGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
2012113 ATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGC
66 ATCCTTTAAAAAAGACAAGCATCGATTC-TCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * * *
2012177 CAAAACACATACCCTTCATTAAGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
* * ** * * * * *
2012242 TTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACCTGAATAATCATACA
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACT
* *
2012307 AATCCTCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTG
260 AATCC-CCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTG
* ** * *
2012372 ATGTTTTGGTTTCACATGAAAGGCATT-T-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCATGCC
324 ATGCTTTGGTTTCACAACAAAGG--TTCTATT-CCACCAATTTTTGTAAAGTCTAACTTCATGCC
* ** ** * *
2012435 TCAAAT-ACGACAAACATGGATTCTATTAATGATCTTCATTCTTTTTGTGATTAGGCGCTATAAA
386 TCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAA
* * * *
2012499 CATATTCTCCTCAGTATGATGAATG
450 CACATTCTCCTCACTAGGATAAATG
* * *
2012524 ATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCATATTTTCCTTAAAATCAAAGTT
1 ATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * * *
2012588 CATCCCTTAAAAAAGACAGGCATCGATTCTCGTAAAAATCTCCATTCTTTTCAAGATTGGGAAAT
65 CATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * *
2012653 AAAAACACATA-CCTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
2012717 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTC-TCAC
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCAT-AC
* *
2012781 TAATCCGCATTCTTTTCAGGATTAG
259 TAATCC-CCTTCTTTTTAGGATTAG
2012806 TGATGAAAAC
Statistics
Matches: 652, Mismatches: 94, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
474 1 0.00
475 127 0.19
476 486 0.75
477 34 0.05
478 4 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
ATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAACA
AAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCT
TTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACTA
ATCCCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTGAT
GCTTTGGTTTCACAACAAAGGTTCTATTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAACACATT
CTCCTCACTAGGATAAATG
Found at i:2014900 original size:159 final size:157
Alignment explanation
Indices: 2014720--2025998 Score: 2212
Period size: 159 Copynumber: 71.1 Consensus size: 157
2014710 CACATACCCT
* * *
2014720 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTG
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
2014785 ATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACCTGAATAATCATACAAATCCTCCTTCTTTT
66 -TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTTT
* *
2014850 TAGGATTAGGCACCATAAACAAAGTTTTC
130 TAGGATTAGGCACCATAAACATA-TTTCC
* * * * * * *
2014879 TCATTAGGATACATGATATTGATGTTTTGGTTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTT
* * * * * * * * * * *
2014943 GTAAAGTCTAACTTCGTGC-CTCAAATACGACAAACATGGATTCT-ATTA-ATGATCTTCATTCT
65 GTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTCT
* *
2015005 TTTT-GTGATTAGGCGCTATAAACATATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * * *
2015037 TCAGTATGATGA-ATGATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTC-CTATTT
1 TCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGCA-AGAAAAGCTTTTCTTT-CCACCATTT
* * ** * * *
2015099 TCCT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAGGCATTG-ATTCTCGTAAAAAT-CTCCAT
63 T--TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACAAATCCT-CAT
* * * * ** * * *
2015161 TCTTTTCAAGATTGGGAAATAAAAACACA-TACC
124 TCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * *
2015194 TTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * ** * * *
2015259 AATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTC-TCACTAATCCGCATTCTT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCAT-ACAAATCCTCATTCTT
* *
2015323 TTCAGGATTAGGCACCATAAACATAGTTTTC
128 TTTAGGATTAGGCACCATAAACATA-TTTCC
* * * * * *
2015354 TCATTAGGAGACACGATATTGATGCTTTGGTTTCGGAA-CAAAGGTTTTATTTCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * *
2015418 GTAAAGTCTAAGTTCATGCGTC--AAATGAGACAAACTTGGAT--TC-TAGCAATGATCTTCATT
65 GTAAAATCAAAGTTCAT-C-TCTTAAATAAGACAAACTTGAATACTCATA-CAA--ATCCTCATT
** * *
2015478 AATTTT-GCGATTAGGCACAATAAACACATTCTCC
125 CTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** ** * * * ** * *
2015512 TCATTAGGATAAATGATATTGCTAATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2015577 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCGTA-ATAGT-CTCTATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCTC-ATTC
* * * * * *
2015638 TTTTTAAGATTGGGAAGACA-AAACACATTGCCC
126 TTTTTAGGATTAGGCA-CCATAAACATATT-TCC
* * * *
2015671 TCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** * * * *
2015735 G-ACAGAATCAAATTTTTTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTCTT
65 GTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTT
* *
2015799 TTTAGGATTTGGAACCATAAACATAGTCTT-C
128 TTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2015830 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2015893 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2015953 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * * *** * * *
2015988 TCATTAGGATGA-ATAACATTGATTATCTT-CTTTTGTGTGAAAATCTTTTCGTTGC-CC-TGTT
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TT
* * * * * * * * *
2016049 TTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCG-ATTCTCGTA-ACAGT-CTCCA
63 TT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCT-CA
* * * * * ** **
2016111 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCC
123 TTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2016146 TTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTT-GCGAGAAAAGATTTTCTTTCCATTGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2016209 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2016272 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * * ** * * *
2016306 TCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * * * * *
2016370 GTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTCA
65 GTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTCT
* * *
2016432 TTTT-GTGATTGGGCACAATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2016464 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2016528 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2016592 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2016622 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * * *
2016687 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * *
2016752 TCAAGATTAGGCACCATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2016782 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * ** * * * * * *
2016846 GTAAAGTCTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2016908 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2016940 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2017005 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCA-AAAACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACAA-ATCCT-CATTC
* * * * **
2017067 TTTTCAAGGA-TGGGAACCCA-AAACACATACCC
126 TTTT-TAGGATTAGGCA-CCATAAACATATTTCC
* * * * * *
2017099 TTCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTT
** * * * * *
2017163 TG-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCT
64 TGTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCT
* *
2017227 TTTTAGGATTTGGAACCATAAACATAGTCTT-C
127 TTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2017259 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2017322 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2017382 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * *** * *
2017417 TCATTAGGATGA-ATAACATTGATTATCTT--CTTCTGTGTGAAAATCTTTT-TGTTGC-CC-TG
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTC-GCAAGAAAAGCTTTTCT-TTCCACCAT-
* * * * * * ** *
2017476 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGAC-AAGTGTCG-ATTCTTGTA-ACAGT-CT
61 TTTT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACT-T-GAATACTCATACA-AATCCT
* * * * * ** **
2017537 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCC
121 -CATTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2017575 TTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTT-GCGAGAAAAGCTTTTCTTT-AATGGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2017637 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2017700 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * * ** * * *
2017734 TCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * * * * *
2017798 GTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTCA
65 GTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTCT
* * *
2017860 TTTT-GTGATTGGGCACAATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2017892 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2017956 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2018020 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2018050 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * * * *
2018115 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAACCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * *
2018180 TCAAGATTAGGCACCATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2018210 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * ** * * * * * *
2018274 GTAAAGTCTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2018336 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2018368 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2018433 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * **
2018495 TTTTCAAGGA-T-GGTAACCCA-AAACACATACCCC
126 TTTT-TAGGATTAGG-CA-CCATAAACATAT-TTCC
* * * *
2018528 TCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTT
** * * * * *
2018592 G-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTT
65 GTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTT
* *
2018656 TTTAGGATTTGGAACCATAAACATAGTCTT-C
128 TTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2018687 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2018750 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2018810 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * *** * *
2018845 TCATTAGGATGA-ATAACATTGATTATCTT--CTTCTGTGTGAAAATCTTTT-TGTTGC-CC-TG
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTC-GCAAGAAAAGCTTTTCT-TTCCACCAT-
* * * * * * ** *
2018904 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGAC-AAGTGTCG-ATTCTTGTA-ACAGT-CT
61 TTTT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACT-T-GAATACTCATACA-AATCCT
* * * * * ** **
2018965 CCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCC
121 -CATTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2019003 TTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTT-GCGAGAAAAGCTTTTCTTT-AATGGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2019065 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2019128 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * ** * * *
2019162 TCATTAGGATACAT-AGTATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTT
1 TCATTAGGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* * * * * * * * * * *
2019225 TGTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTC
64 TGTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTC
* * * *
2019287 ATTTT-GTGATTGGGCACAATAAACACATTCTCC
126 TTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2019320 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2019384 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2019448 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2019478 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * * *
2019543 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * *
2019608 TCAAGATTAGGCACCATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2019638 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * ** * * * * * *
2019702 GTAAAGTCTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2019764 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2019796 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2019861 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * **
2019923 TTTTCAAGGA-T-GGTAACCCA-AAACACATACCCC
126 TTTT-TAGGATTAGG-CA-CCATAAACATAT-TTCC
* * * *
2019956 TCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTT
** * * * * *
2020020 G-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTT
65 GTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTT
* *
2020084 TTTAGGATTTGGAACCATAAACATAGTCTT-C
128 TTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2020115 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2020178 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2020238 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * * *** * * *
2020273 TCATTAGGATGA-ATAACATTGATTATCTT-CTTTTGTGTGAAAATCTTTTCGTTGC-CC-TGTT
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TT
* * * * * * * * *
2020334 TTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCG-ATTCTCGTA-ACAGT-CTCCA
63 TT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCT-CA
* * * * * * ** **
2020396 TTCTTTTCAAGACTGGGAACCAAAAACACGTGCCC
123 TTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2020431 TTCTTTAGGAT-CTGTGACATTAATGTTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2020494 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2020557 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * ** * * *
2020591 TCATTAGGATACAT-AGTATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTT
1 TCATTAGGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* * * * * * * * * * *
2020654 TGTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTC
64 TGTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTC
* * * *
2020716 ATTTT-GTGATTGGGCACAATAAACACATTCTCC
126 TTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2020749 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2020813 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2020877 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2020907 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * *
2020972 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * * *
2021037 TCAAGATTAGGCACTATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2021067 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* ** * ** * * * * * *
2021131 GTAAAGTTTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2021193 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2021225 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2021290 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * **
2021352 TTTTCAAGGA-T-GGTAACCCA-AAACACATACCCC
126 TTTT-TAGGATTAGG-CA-CCATAAACATAT-TTCC
* * * *
2021385 TCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTT
** * * * * *
2021449 G-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTT
65 GTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTT
* *
2021513 TTTAGGATTTGGAACCATAAACATAGTCTT-C
128 TTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2021544 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2021607 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2021667 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * * *** * * *
2021702 TCATTAGGATGA-ATAACATTGATTATCTT-CTTTTGTGTGAAAATCTTTTCGTTGC-CC-TGTT
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TT
* * * * * * * * *
2021763 TTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCG-ATTCTCGTA-ACAGT-CTCCA
63 TT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCT-CA
* * * * * * ** **
2021825 TTCTTTTCAAGACTGGGAACCAAAAACACGTGCCC
123 TTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2021860 TTCTTTAGGAT-CTGTGACATTAATGTTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2021923 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2021986 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * ** * * *
2022020 TCATTAGGATACAT-AGTATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTT
1 TCATTAGGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* * * * * * * * * * *
2022083 TGTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTC
64 TGTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTC
* * * *
2022145 ATTTT-GTGATTGGGCACAATAAACACATTCTCC
126 TTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2022178 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2022242 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2022306 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2022336 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * * *
2022401 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * *
2022466 TCAAGATTAGGCACCATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2022496 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * ** * * * * * *
2022560 GTAAAGTCTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2022622 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2022654 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2022719 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * **
2022781 TTTTCAAGGA-T-GGTAACCCA-AAACACATACCCC
126 TTTT-TAGGATTAGG-CA-CCATAAACATAT-TTCC
* * * *
2022814 TCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTT
** * * * * *
2022878 G-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTT
65 GTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTT
* *
2022942 TTTAGGATTTGGAACCATAAACATAGTCTT-C
128 TTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2022973 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2023036 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2023096 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * * *** * * *
2023131 TCATTAGGATGA-ATAACATTGATTATCTT-CTTTTGTGTGAAAATCTTTTCGTTGC-CC-TGTT
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TT
* * * * * * * * *
2023192 TTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCG-ATTCTCGTA-ACAGT-CTCCA
63 TT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCT-CA
* * * * * * ** **
2023254 TTCTTTTCAAGACTGGGAACCAAAAACACGTGCCC
123 TTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * * ***
2023289 TTCTTTAGGAT-CTGTGACATTAATGTTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
** ** * * *
2023352 TTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2023415 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * ** * * *
2023449 TCATTAGGATACAT-AGTATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTT
1 TCATTAGGATACATGA-TATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* * * * * * * * * * *
2023512 TGTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTC
64 TGTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTC
* * * *
2023574 ATTTT-GTGATTGGGCACAATAAACACATTCTCC
126 TTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2023607 TCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2023671 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2023735 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2023765 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * *
2023830 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * * *
2023895 TCAAGATTAGGCACTATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * *
2023925 TCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* ** * ** * * * * * *
2023989 GTAAAGTTTAAGTTCGTGACTCAAATGAGAAAAACAT-AGATTCT-AGTA-ATAATCTTCATTCT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGA-ATACTCA-TACA-AATCCTCATTCT
* * * *
2024051 TTTT-GTGATAAGGGACTATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * ** * *
2024083 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2024148 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * * **
2024210 TTTTCAAGGA-TGGGAACCCA-AAACACATACCC
126 TTTT-TAGGATTAGGCA-CCATAAACATATTTCC
* * * * *
2024242 TTCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGA-TT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCA-CCATTT
** * * * *
2024305 TTG-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCATTC
63 TTGTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTC
* *
2024369 TTTTTAGGATTTGGAACCATAAACATAGTCTT-C
126 TTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2024402 TCATTTGGATACACT-ATATTGATG-TGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACAAATTT
1 TCATTAGGATACA-TGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTT
* * * * * *
2024464 TTGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCA
63 TTGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCA
* * * *
2024524 TTCTTTTT-GTGATCAGGCACTATAAATACATTCTCC
123 TTCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
* * ** * * *** * * *
2024560 TCATTAGGATGA-ATAACATTGATTATCTT-CTTTTGTGTGAAAATCTTTTCGTTGC-CC-TGTT
1 TCATTAGGAT-ACATGATATTGATGCT-TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCAT-TT
* * * * * * * * * *
2024621 TTCCTTAAAATTAAAGCTCATCCCTTAAAAAAGACAAGCGTCG-ATTCTCGTA-ATAGT-CTCCA
63 TT--GTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTCATACA-AATCCT-CA
* * * * * ** **
2024683 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCC
123 TTCTTTTTAGGATTAGGCACCATAAACATATTTCC
* * * * * ***
2024718 TTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTT-GCGAGAAAAGCTTTTCTTTCCATTGTTT
1 -TCATTAGGATAC-ATGATATTGATGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* ** ** * * *
2024781 GTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATT
63 TTG-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATA--CAAATCCTCATT
* ** * *
2024844 CTTTTCAAAATTAGGCACCATACACAGAGTCTT-C
125 CTTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * * ** * * *
2024878 TCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * * * * * * * * * *
2024942 GTAAAGTCTAAGTTCGTGCT-TCAAATGAGACGAACATGGATTCT-AGTA-ATGATCCGCATTCA
65 GTAAAATCAAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTCT
* * *
2025004 TTTT-GTGATTGGGCACAATAAACACATTCTCC
127 TTTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * ** * * *
2025036 TCAATAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT
* * * * * ** ** * * *
2025100 CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTA-ACAGCCTCCATTCCT
65 -GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCT-CATTCTT
* * * * * *
2025164 TTCAAGATTGGGAAGCCA-AAACACATTGCC
128 TTTAGGATTAGGCA-CCATAAACATATTTCC
* * * *
2025194 ATCGTTAGGATACATGACATTGAAGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* ** *** * *
2025259 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTT
65 G-TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTT
* * *
2025324 TCAAGATTAGGCACCATAAACATA-GTCGTC
129 TTAGGATTAGGCACCATAAACATATTTC--C
* * * * * * * * *
2025354 TCATTAGGATACACGATATAGATGGTTTGCTTTCTCAACAAAGGC-TTTCTTCCCACCAATTATT
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTT
* * * ** * * * * * * *
2025418 GTAAAGTCTAAGTTCGTGACTCAAATGAGAAAAACCTGGATTCT-AGTA-ATAATCTTCATTCTT
65 GTAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCA-TACA-AATCCTCATTCTT
* * * *
2025481 TTT-GTGATAAGGGACTATAAACACATTCTCC
128 TTTAG-GATTAGGCACCATAAACATATT-TCC
* * * * ** * * * * ** * *
2025512 TTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGATAATCTTTTCTTTGTACTATTATCC
1 TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATT-T-T
* * * ** * * *
2025577 T-TAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACG-ATTCTCAATA-ACATTCTCCATTC
64 TGTAAAATCAAAGTTCATCTCTTAAATAAGACAAAC-TTGAATACTC-ATACAAATCCT-CATTC
* * * * **
2025639 TTTTCAAGGA-TGGGAACCCA-AAACACATACCC
126 TTTT-TAGGATTAGGCA-CCATAAACATATTTCC
* * * * *
2025671 TTCATTAGGATACATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCATCGA-TT
1 -TCATTAGGATACATGATATTGATGCTTTGGTTTC-GCAAGAAAAGCTTTTCTTTCCA-CCATTT
** * * * * *
2025734 TTG-ACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTC
63 TTGTA-A-AATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTC
* *
2025798 TTTTTAGGATTTGGAACCATAAACATAGTCTT-C
126 TTTTTAGGATTAGGCACCATAAACATA-T-TTCC
* * * *
2025831 TCATTAGGATACACT-ATATTGATGCGTTGGTTTCGCAACAAAAGC-TTTCTTCCCACGAATTTT
1 TCATTAGGATACA-TGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTT
* * * * * *
2025894 TGTAAAGTCTAAA-TTCATGC-CTCAAATGAGACAAACATGGAT--TCA-ACTAATGATCTTCAT
64 TGTAAAATC-AAAGTTCAT-CTCTTAAATAAGACAAACTTGAATACTCATAC-AA--ATCCTCAT
* * *
2025954 TCTTTTT-GTGATCAGGCACTATAAACACATTCTCC
124 TCTTTTTAG-GATTAGGCACCATAAACATATT-TCC
2025989 TCATTAGGAT
1 TCATTAGGAT
2025999 GAATAACATT
Statistics
Matches: 7893, Mismatches: 2439, Indels: 1577
0.66 0.20 0.13
Matches are distributed among these distances:
155 17 0.00
156 64 0.01
157 145 0.02
158 2930 0.37
159 3741 0.47
160 894 0.11
161 86 0.01
162 16 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (157 bp):
TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
TAAAATCAAAGTTCATCTCTTAAATAAGACAAACTTGAATACTCATACAAATCCTCATTCTTTTT
AGGATTAGGCACCATAAACATATTTCC
Found at i:2015903 original size:476 final size:475
Alignment explanation
Indices: 2014429--2027416 Score: 16102
Period size: 476 Copynumber: 27.3 Consensus size: 475
2014419 CAAGAAGGCT
* *
2014429 TTGGTTTCGCAACAAAGG-TTCTACTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAA
1 TTGGTTTCGCAACAAAGGCTT-T-CTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
* ** ** * *
2014492 TGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATGCACAATAAACACATT
64 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* * * *
2014557 CTCCTCACTAGGATAAATGATATTGGTGATTTT-TGTTTGCATGGAAATCTTTTCTTTGCCCTAT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCGTGAAAATCTTTTCTTTGCCCTAT
* * * * *
2014621 TTTCCTTAATATCAAAGTTCATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCAT
193 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC-TCGTAACAGTCTCCAT
* *
2014685 TCTTTTCAAGATTGGGAAGCCAAAACACA-TACCCTTCATTAGGATACATGACATTGATGCTTTG
257 TCTTTTCAAGATTGGGAAGCCAAAACACATTGCCC-TCATTAGGATACATGACATTAATGCTTTG
* * ** *
2014749 GTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAG
321 GTGTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * * * *
2014814 ACAAACCTGAATAATCATACAAATCCTCC-TTCTTTTTAGGATTAGGCACCATAAACAAAGTTTT
385 ACAAACATGAATACTCACACTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
**
2014878 CTCATTAGGATACA-TGATATTGATGTT
449 CTCATTAGGATACACT-ATATTGATGCG
* ** * * *
2014905 TTGGTTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCGTGCCTCAAAT
1 TTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * *
2014969 -ACGACAAACATGGATTCTATTAATGATCTTCATTCTTTTTGTGATTAGGCGCTATAAACATATT
65 GA-GACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATT
* * * * * * * *
2015033 CTCCTCAGTATGATGAATGATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCCTAT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGT-GAAAATCTTTTCTTTGCCCTAT
* * * * *
2015097 TTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAGGCATTGATTCTCGTAAAAATCTCCATT
193 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATT
*** * * * * * *
2015162 CTTTTCAAGATTGGGAAATAAAAACACA-TACCTTGATTAGGATATATGACATTGATGCTTTAGT
258 CTTTTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGT
* ** * *
2015226 GTCGCGAGTAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGAC
323 GTCTC-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2015291 AAACTTGAATACTCTCACTAATCCGCATTCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTC
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
* * *
2015356 ATTAGGAGACACGATATTGATGCT
452 ATTAGGATACACTATATTGATGCG
* * * * * *
2015380 TTGGTTTCGGAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * ** * *
2015445 AGACAAACTTGGATTCTAGCAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * ** *
2015510 CCTCATTAGGATAAATGATATTGCTAATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTAT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * *
2015575 CCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCGTAATAGTCTCTATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2015640 TTTAAGATTGGGAAGACAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGTGTC
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGTGTC
* * *
2015705 ATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAATTTTTTCTCTTAAATAAGACAAA
326 -TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * *
2015770 CATGAATACTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATT
390 CATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
2015835 AGGATACACTATATTGATGCG
455 AGGATACACTATATTGATGCG
* * * *
2015856 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2015921 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2015986 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2016051 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * *
2016116 TTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* * *** *
2016178 GT-TGCGAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2016242 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2016306 TCATTAGGATACA-TAATATTGACGCT
450 TCATTAGGATACACT-ATATTGATGCG
* * ** *
2016332 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2016397 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2016462 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2016527 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2016592 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2016656 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2016721 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2016786 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * *
2016807 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2016872 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2016937 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * ** *
2017002 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* *
2017067 TTTTCAAGGA-TGGGAACCCAAAACACA-TACCCTTCATTAGGATACATGACATTAATGCTTTGG
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCC-TCATTAGGATACATGACATTAATGCTTTGG
* * *
2017130 TGTCATCAAAAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGA
322 TGTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * *
2017195 CAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCT
386 CAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
2017260 CATTAGGATACACTATATTGATGCG
451 CATTAGGATACACTATATTGATGCG
* * * *
2017285 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2017350 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2017415 CCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTT
* * ** *
2017479 TCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCT
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * *
2017544 TTTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGG
260 TTTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGG
* * *** *
2017606 TGT-TGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
322 TGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
2017669 ACAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTT
385 ACAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* *
2017733 CTCATTAGGATACA-TAATATTGACGCT
449 CTCATTAGGATACACT-ATATTGATGCG
* * ** *
2017760 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2017825 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2017890 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2017955 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2018020 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2018084 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *
2018149 AAAAGAATGCTCATACTAACCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2018214 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * *
2018235 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2018300 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2018365 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2018430 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* * **
2018495 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGT
*
2018559 GTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2018624 AAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTC
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
2018689 ATTAGGATACACTATATTGATGCG
452 ATTAGGATACACTATATTGATGCG
* * * *
2018713 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2018778 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2018843 CCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTT
* * ** *
2018907 TCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCT
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCT
* * *
2018972 TTTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGG
260 TTTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGG
* * *** *
2019034 TGT-TGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAG
322 TGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
2019097 ACAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTT
385 ACAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* *
2019161 CTCATTAGGATACA-TAGTATTGACGCT
449 CTCATTAGGATACACTA-TATTGATGCG
* * ** *
2019188 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2019253 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2019318 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2019383 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2019448 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2019512 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2019577 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2019642 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * *
2019663 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2019728 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2019793 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2019858 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* * **
2019923 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGT
*
2019987 GTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2020052 AAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTC
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
2020117 ATTAGGATACACTATATTGATGCG
452 ATTAGGATACACTATATTGATGCG
* * * *
2020141 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2020206 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2020271 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2020336 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * * *
2020401 TTCAAGACTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* *** *
2020463 GT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2020527 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2020591 TCATTAGGATACA-TAGTATTGACGCT
450 TCATTAGGATACACTA-TATTGATGCG
* * ** *
2020617 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2020682 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2020747 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2020812 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2020877 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2020941 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2021006 AAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACTATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2021071 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * * *
2021092 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTTTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2021157 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2021222 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2021287 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* * **
2021352 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGT
*
2021416 GTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2021481 AAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTC
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
2021546 ATTAGGATACACTATATTGATGCG
452 ATTAGGATACACTATATTGATGCG
* * * *
2021570 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2021635 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2021700 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2021765 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * * *
2021830 TTCAAGACTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* *** *
2021892 GT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2021956 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2022020 TCATTAGGATACA-TAGTATTGACGCT
450 TCATTAGGATACACTA-TATTGATGCG
* * ** *
2022046 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2022111 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2022176 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2022241 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2022306 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2022370 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2022435 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2022500 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * *
2022521 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2022586 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2022651 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2022716 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* * **
2022781 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGT
*
2022845 GTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * * * *
2022910 AAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTC
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
2022975 ATTAGGATACACTATATTGATGCG
452 ATTAGGATACACTATATTGATGCG
* * * *
2022999 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2023064 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2023129 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2023194 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * * *
2023259 TTCAAGACTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* *** *
2023321 GT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2023385 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2023449 TCATTAGGATACA-TAGTATTGACGCT
450 TCATTAGGATACACTA-TATTGATGCG
* * ** *
2023475 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2023540 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2023605 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2023670 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2023735 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2023799 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2023864 AAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACTATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2023929 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * * *
2023950 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTTTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2024015 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2024080 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2024145 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* *
2024210 TTTTCAAGGA-TGGGAACCCAAAACACA-TACCCTTCATTAGGATACATGACATTAATGCTTTGG
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCC-TCATTAGGATACATGACATTAATGCTTTGG
* *
2024273 TGTCATCAAAAAAGCTTTTCTTTCCATCGA-TTTTGACAGAATCAAAGTTTGTCTCTTAAATAAG
322 TGTC-TCAAAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * *
2024337 ACAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTC
385 ACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2024402 TCATTTGGATACACTATATTGATGTG
450 TCATTAGGATACACTATATTGATGCG
* * * *
2024428 TTGGTTTCGCAACAAAAGCTTTCTTCCCACAAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * * *
2024493 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAATACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2024558 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * *
2024623 CCTTAAAATTAAAGCTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAATAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * *
2024688 TTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* *** * *
2024750 GT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTGTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2024814 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* *
2024878 TCATTAGGATACA-TAATATTGACGCT
450 TCATTAGGATACACT-ATATTGATGCG
* * ** *
2024904 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2024969 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2025034 CCTCAATAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * * *
2025099 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* *
2025164 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
*
2025228 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2025293 AAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
389 ACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2025358 TAGGATACACGATATAGATG-G
454 TAGGATACACTATATTGATGCG
* * * *
2025379 TTTGCTTTCTCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * * *
2025444 GAGAAAAACCTGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTC
* * * * ** *
2025509 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGATAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * * *
2025574 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCATTC
* *
2025639 TTTTCAAGGA-TGGGAACCCAAAACACA-TACCCTTCATTAGGATACATGACATTAATGCTTTGG
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCC-TCATTAGGATACATGACATTAATGCTTTGG
* *
2025702 TGTCATCAAAAAAGCTTTTCTTTCCATCGA-TTTTGACAGAATCAAAGTTTGTCTCTTAAATAAG
322 TGTC-TCAAAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
2025766 ACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTC
385 ACAAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
2025831 TCATTAGGATACACTATATTGATGCG
450 TCATTAGGATACACTATATTGATGCG
* * * *
2025857 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* * *
2025922 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2025987 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2026052 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * *
2026117 TTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGAAT-CTGTGACATTAATGCTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTGCCC-TCATTAGGATAC-ATGACATTAATGCTTTGGT
* * *** *
2026179 GT-TGCGAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * *
2026243 CAAACATGAATAC-CTACGCTAATCCCCATTCTTTTCAATATTAGGCACCATACACAGAGTCTTC
386 CAAACATGAATACTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
** *
2026307 TCATTAGGATACA-TAATATTGACACT
450 TCATTAGGATACACT-ATATTGATGCG
* * ** * *
2026333 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** * * *
2026398 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* *
2026463 CCTCAGTAGGATAAATGATATTGACGATTTTC-TTT---TG----------C---G---T-TTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * *
2026507 -CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
* * * *
2026571 TTCAAGATTGGGAAGCCAAAACACATTGTCGTCATTATGATACATGACATTGAA-GCTTTGGTAT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATT-AATGCTTTGGTGT
* * *
2026635 CACAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATTTGTCTCTTAAATAAGACAA
325 CTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2026700 ACAAGAATACTCATACTAA-CCACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCA
389 ACATGAATACTCACACTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA
* * *
2026764 TTAAGATACACGATATTGATGCT
453 TTAGGATACACTATATTGATGCG
* * * ** **
2026787 TTGGTTTTGCAACAAAGGCTTTCTTCCCAGCAATTTTAGTAAAGTCTAAGTTTATGCCTGTAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
* ** *
2026852 AAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAAGCACTATAAACACATTC-
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
* * *
2026916 CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
131 C-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* *
2026981 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTCCATTC
* * * * *
2027045 TTTTCAAGATTGGGAAGCGAAAACACATT-CCCTTCCTTAGGATACATGGCATTGATGCTTTGTT
259 TTTTCAAGATTGGGAAGCCAAAACACATTGCCC-TCATTAGGATACATGACATTAATGCTTTGGT
* * * *
2027109 GTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGAC
323 GTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2027174 AAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCT
387 AAACATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGTCTTCT
***
2027238 CATTAGGATACA-TGATATTGATATT
451 CATTAGGATACACT-ATATTGATGCG
* * *
2027263 TTGGTTTCGCAACAAAGGCATTT-TTCCCACAAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAAC
1 TTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAAT
* * * *
2027327 GCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATCA-GCAACTATAAACACATT
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC-ACTATAAACACATT
*
2027391 CTCGC-CATTAGGATACATGATATTGA
129 CTC-CTCATTAGGATAAATGATATTGA
2027417 AGCTTTGTTT
Statistics
Matches: 10692, Mismatches: 1590, Indels: 460
0.84 0.12 0.04
Matches are distributed among these distances:
453 4 0.00
454 354 0.03
455 20 0.00
456 4 0.00
458 2 0.00
459 1 0.00
462 1 0.00
468 1 0.00
471 1 0.00
472 2 0.00
474 48 0.00
475 1287 0.12
476 5981 0.56
477 2923 0.27
478 63 0.01
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (475 bp):
TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTT
TTCAAGATTGGGAAGCCAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGTGTC
TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
ATGAATACTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTA
GGATACACTATATTGATGCG
Found at i:2017542 original size:953 final size:952
Alignment explanation
Indices: 2014429--2027416 Score: 16158
Period size: 953 Copynumber: 13.7 Consensus size: 952
2014419 CAAGAAGGCT
*
2014429 TTGGTTTCGCAACAAAGG-TTCTACTT-CCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAA
1 TTGGTTTCGCAACAAAGGCTT-T-CTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAA
* * ** * *
2014492 TGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATGCACAATAAACACATT
64 TGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATT
* * * *
2014557 CTCCTCACTAGGATAAATGATATTGGTGATTTT-TGTTTGCATGGAAATCTTTTCTTTGCCCTAT
129 CTCCTCATTAGGATAAATGATATTGATGATTTTCT-TTTGCGTGAAAATCTTTTCTTTGCCCTAT
* * * * *
2014621 TTTCCTTAATATCAAAGTTCATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCAT
193 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTT-GTAACAGTCTCCAT
** *
2014685 TCTTTTCAAGATTGGGAAGCCAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGG
257 TCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGG
* * ** *
2014750 TGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGA
322 TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * * *
2014815 CAAACCTGAATAATCATACAAATCCTCC-TTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTC
387 CAAACATGAATACTCATACTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * ** * *
2014879 TCATTAGGATACATGATATTGATGTTTTGGTTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTT
451 TCATTAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTTTT
* *
2014943 GTAAAGTCTAACTTCGTGCCTCAAAT-ACGACAAACATGGATTCTATTAATGATCTTCATTCTTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTCTTT
* * * * * * *
2015007 TTGTGATTAGGCG-CTATAAACATATTCTCCTCAGTATGATGAATGATATCGATGTTTTTCTTTT
579 TTGTGATCAGG-GACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTT
* * * * *
2015071 GCATGGATAA-CTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAG
643 GCGT-GAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAA
* * * *** *
2015135 GCATTGATTCTC-GTAAAAATCTCCATTCTTTTCAAGATTGGGAAATAAAAACACATA-CCTTGA
707 GCATCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCA
* * * * ** *
2015198 TTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTCTTTCCACCATTTTTAATA
772 TTAGGATACATGACATTAATGCTTTGGTGTCTC-AAAAAAGCTTTTCTTTCCACCATTTTTGATA
* * * * * *
2015263 GAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCTCACTAATCCGCATTCTTTTCAG
836 GAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAA
* * * *
2015328 GATTAGGCACCATAAACATAGTTTTCTCATTAGGAGACACGATATTGATGCT
901 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * * * *
2015380 TTGGTTTCGGAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * * *
2015445 AGACAAACTTGGATTCTAGCAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * ** *
2015510 CCTCATTAGGATAAATGATATTGCTAATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTAT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * *
2015575 CCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCGTAATAGTCTCTATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* * *
2015640 TTTAAGATTGGGAAGACAAAACACATTGCCCTCATTAGGATACATGACATTAATGCTTTGGTGTC
261 TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC
* * * *
2015705 ATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAATTTTTTCTCTTAAATAAGACAA
326 -GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2015769 ACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCAT
390 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
2015834 TAGGATACACTATATTGATGCG-TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAA
455 TAGGATACACGATATTGATG-GTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
* * * *
2015898 AGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTG
519 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTG
* * * * * * *
2015963 ATCAGGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGA
584 ATCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGA
* * * * *
2016028 AAATCTTTTCGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGA
649 AAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGA
* * * *
2016093 TTCTC-GTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT
714 TTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTAGGAT
* * * *** *
2016157 -CTGTGACATTAATGCTTTGGTGT-TGCGAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATC
779 AC-ATGACATTAATGCTTTGGTGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
* * *
2016220 AAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CCTACGCTAATCCCCATTCTTTTCAAAATT
841 AAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ACACTAATCCCCATTCTTTTCAAGATT
* * * *
2016284 AGGCACCATACACAGAGTCTTCTCATTAGGATACA-TAATATTGACGCT
905 AGGCACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGCG
* * ** * *
2016332 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* ** * *
2016397 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2016462 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * *
2016527 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* *
2016592 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGT
2016656 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2016721 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
390 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
2016786 TAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAA
455 TAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * *
2016851 GTCTAAGTTCGTGACTCAAATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGA
520 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * *
2016916 TAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAA
585 TCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAA
** * * *
2016981 AATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGAT
650 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
*** *
2017046 TCTCAAAAACATTCTCCATTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGAT
715 TCTCTGTAACAGTCTCCATTCTTTTCAA-GATTGGGAACCCAAAACACATACCCTTCATTAGGAT
* * *
2017110 ACATGACATTAATGCTTTGGTGTCATCAAAAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAA
779 ACATGACATTAATGCTTTGGTGTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * *
2017175 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGG
843 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGG
*
2017240 AACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
908 CACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * *
2017285 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
2017350 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2017415 CCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTT
* * **
2017479 TCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCT
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCT
* * *
2017544 TTTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGG
260 TTTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGG
* * * *** *
2017606 TGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGA
322 TGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * *
2017670 CAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTT
387 CAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
** * * * * **
2017733 CTCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTT
450 CTCATTAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * ** *
2017798 GTAAAGTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * *
2017863 TGTGAT-TGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTG
580 TGTGATCAGGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
2017927 CGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGC
644 CGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * * ** * *
2017992 ATCTATACT-TGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTT
709 ATCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATT
*
2018056 AGGATACATGACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
774 AGGATACATGACATT-AATGCTTTGGTGTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * *
2018120 AATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAAT-GCTCATACTAACCCCCATTCTTTTCAA
837 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAG-TCACACTAATCCCCATTCTTTTCAA
* * *
2018184 GATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATG-G
901 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * * *
2018235 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
2018300 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2018365 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * ** *
2018430 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTC
* * ** *
2018495 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGT
* *
2018559 GTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * *
2018623 CAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCT
387 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
* * *
2018688 CATTAGGATACACTATATTGATGCG-TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTG
452 CATTAGGATACACGATATTGATG-GTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
* * * *
2018752 TAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTT
516 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTT
* * * * * * * *
2018817 GTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTG
581 GTGATCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * **
2018882 TGAAAATCTTTT-TGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGTG
646 TGAAAATCTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * * *
2018946 TCGATTCT-TGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTA
710 TCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTA
* * * *** *
2019010 GGAT-CTGTGACATTAATGCTTTGGTGT-TGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGG
775 GGATAC-ATGACATTAATGCTTTGGTGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAG
* *
2019072 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CCTACGCTAATCCCCATTCTTTTCAA
837 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ACACTAATCCCCATTCTTTTCAA
* * * * *
2019136 AATTAGGCACCATACACAGAGTCTTCTCATTAGGATACA-TAGTATTGACGCT
901 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTA-TATTGATGCG
* * ** * *
2019188 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* ** * *
2019253 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2019318 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * *
2019383 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* *
2019448 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGT
2019512 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2019577 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
390 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
2019642 TAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAA
455 TAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * *
2019707 GTCTAAGTTCGTGACTCAAATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGA
520 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * *
2019772 TAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAA
585 TCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAA
** * * *
2019837 AATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGAT
650 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** * * *
2019902 TCTCAATAACATTCTCCATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGAT
715 TCTCTGTAACAGTCTCCATTCTTTTCAA-GATTGGGAACCCAAAACACATACCCTTCATTAGGAT
*
2019966 ACATGACATTAATGCTTTGGTGTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAA
779 ACATGACATTAATGCTTTGGTGTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * *
2020031 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGG
843 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGG
*
2020096 AACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
908 CACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * *
2020141 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
2020206 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2020271 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * *
2020336 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* * * * *
2020401 TTCAAGACTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGT
* * *** *
2020463 GTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2020528 AAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
388 AAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * **
2020591 TCATTAGGATACA-TAGTATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTT
451 TCATTAGGATACACGA-TATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * ** *
2020655 GTAAAGTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * *
2020720 TGTGAT-TGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTG
580 TGTGATCAGGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
2020784 CGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGC
644 CGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * * ** * *
2020849 ATCTATACT-TGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTT
709 ATCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATT
*
2020913 AGGATACATGACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
774 AGGATACATGACATT-AATGCTTTGGTGTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * *
2020977 AATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTTTCAAG
837 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAG
* * * *
2021042 ATTAGGCACTATAAACATAGTCGTCTCATTAGGATACACGATATAGATG-G
902 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * * * *
2021092 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTTTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
2021157 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2021222 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * ** *
2021287 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTC
* * ** *
2021352 TTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGT
* *
2021416 GTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGA
323 GTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
* * * * * *
2021480 CAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCT
387 CAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCT
* * *
2021545 CATTAGGATACACTATATTGATGCG-TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTG
452 CATTAGGATACACGATATTGATG-GTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
* * * *
2021609 TAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTT
516 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTT
* * * * * * *
2021674 GTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTG
581 GTGATCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCG
* * * * *
2021739 TGAAAATCTTTTCGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGT
646 TGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCAT
* * * * *
2021804 CGATTCTC-GTAACAGTCTCCATTCTTTTCAAGACTGGGAACCAAAAACACGTGCCCTTCTTTAG
711 CGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTAG
* * * *** *
2021868 GAT-CTGTGACATTAATGTTTTGGTGT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGA
776 GATAC-ATGACATTAATGCTTTGGTGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * *
2021931 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CCTACGCTAATCCCCATTCTTTTCAAA
838 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ACACTAATCCCCATTCTTTTCAAG
* * * *
2021995 ATTAGGCACCATACACAGAGTCTTCTCATTAGGATACA-TAGTATTGACGCT
902 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTA-TATTGATGCG
* * ** * *
2022046 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* ** * *
2022111 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2022176 CCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * *
2022241 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* *
2022306 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGT
2022370 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * *
2022435 AAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
390 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * *
2022500 TAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAA
455 TAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * *
2022565 GTCTAAGTTCGTGACTCAAATGAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGA
520 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * *
2022630 TAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAA
585 TCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAA
** * * *
2022695 AATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGAT
650 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** * * *
2022760 TCTCAATAACATTCTCCATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGAT
715 TCTCTGTAACAGTCTCCATTCTTTTCAA-GATTGGGAACCCAAAACACATACCCTTCATTAGGAT
*
2022824 ACATGACATTAATGCTTTGGTGTCATCAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAA
779 ACATGACATTAATGCTTTGGTGTC-TCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * *
2022889 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGG
843 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGG
*
2022954 AACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
908 CACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * *
2022999 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
2023064 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2023129 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * *
2023194 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* * * * *
2023259 TTCAAGACTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGTTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGT
* * *** *
2023321 GTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2023386 AAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTC
388 AAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * * * **
2023449 TCATTAGGATACA-TAGTATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTT
451 TCATTAGGATACACGA-TATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * ** *
2023513 GTAAAGTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * *
2023578 TGTGAT-TGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTG
580 TGTGATCAGGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* * *
2023642 CGTGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGC
644 CGTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC
* * * * * ** * *
2023707 ATCTATACT-TGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTT
709 ATCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATT
*
2023771 AGGATACATGACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAG
774 AGGATACATGACATT-AATGCTTTGGTGTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAG
* * * *
2023835 AATCAAAGTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTTTCAAG
837 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAG
* * * *
2023900 ATTAGGCACTATAAACATAGTCGTCTCATTAGGATACACGATATAGATG-G
902 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * * * *
2023950 TTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTTTAAGTTCGTGACTCAAAT
1 -TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAAT
* * * * * *
2024015 GAGAAAAACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTC
65 GAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTC
* * * ** *
2024080 TCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTA
130 TCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
* * ** *
2024145 TCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTC
* **
2024210 TTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGT
259 TTTTCAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGT
* * *
2024274 GTCATCAA-AAAAGCTTTTCTTTCCATCGA-TTTTGACAGAATCAAAGTTTGTCTCTTAAATAAG
323 GTC-GCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * *
2024337 ACAAACATGAATACTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTC
386 ACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * * *
2024402 TCATTTGGATACACTATATTGAT-GTGTTGGTTTCGCAACAAAAGCTTTCTTCCCACAAATTTTT
451 TCATTAGGATACACGATATTGATGGT-TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
* * * *
2024466 GTAAAGTCTAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTT
515 GTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTT
* * * * * * * *
2024531 TGTGATCAGGCACTATAAATACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGT
580 TGTGATCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
* * * * * *
2024596 GTGAAAATCTTTTCGTTGCCCTGTTTTCCTTAAAATTAAAGCTCATCCCTTAAAAAAGACAAGCG
645 GTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * * * *
2024661 TCGATTCTC-GTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTA
710 TCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTA
* * *** * *
2024725 GGAT-CTGTGACATTAATGCTTTGGTGT-TGCGAGAAAAGCTTTTCTTTCCATTGTTTGTGATGG
775 GGATAC-ATGACATTAATGCTTTGGTGTCT-C-AAAAAAGCTTTTCTTTCCACCATTTTTGATAG
* *
2024788 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATA-CCTACGCTAATCCCCATTCTTTTCAA
837 AATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTC-ACACTAATCCCCATTCTTTTCAA
* * * * *
2024852 AATTAGGCACCATACACAGAGTCTTCTCATTAGGATACA-TAATATTGACGCT
901 GATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGCG
* * ** * *
2024904 TTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* ** * *
2024969 AGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2025034 CCTCAATAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * * * *
2025099 TCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* *
2025164 TTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGT
261 TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGT
2025228 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
325 CGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * *
2025293 AAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCAT
390 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* * * *
2025358 TAGGATACACGATATAGATGGTTTGCTTTCTCAACAAAGGCTTTCTTCCCACCAATTATTGTAAA
455 TAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * * *
2025423 GTCTAAGTTCGTGACTCAAATGAGAAAAACCTGGATTCTAGTAATAATCTTCATTCTTTTTGTGA
520 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * * *
2025488 TAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAT
585 TCAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAA
** * * *
2025553 AATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGAT
650 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGAT
** *
2025618 TCTCAATAACATTCTCCATTCTTTTCAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGAT
715 TCTCTGTAACAGTCTCCATTCTTTTCAA-GATTGGGAACCCAAAACACATACCCTTCATTAGGAT
* *
2025682 ACATGACATTAATGCTTTGGTGTCATCAAAAAAGCTTTTCTTTCCATCGA-TTTTGACAGAATCA
779 ACATGACATTAATGCTTTGGTGTC-TCAAAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCA
* * *
2025746 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTG
842 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAG
*
2025811 GAACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
907 GCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * *
2025857 TTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * * *
2025922 AGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCT
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * * * * * * *
2025987 CCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTT
131 CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
* * * *
2026052 CCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTT
196 CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
* * * *
2026117 TTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGAAT-CTGTGACATTAATGCTTTGGT
261 TTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGT
* * * *** *
2026179 GTTGCGAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGAC
323 GTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAC
* * *
2026244 AAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAATATTAGGCACCATACACAGAGTCTTC
388 AAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
** *** * * **
2026307 TCATTAGGATACATAATATTGACACTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTG
451 TCATTAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTG
* * * ** *
2026372 TAAAGTCTAAGTCCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTT
516 TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTT
* * * *
2026437 GTGAT-TGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTC-TTT--
581 GTGATCAGGG-ACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGC
*
2026498 -TG----------C---G---T-TTTT-CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCA
645 GTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCA
* * *** *
2026544 TCTATTCT-TGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGTCGTCATTA
710 TCGATTCTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTA
* * * *
2026608 TGATACATGACATTGAA-GCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCATTTATGATAGA
775 GGATACATGACATT-AATGCTTTGGTGTCTCAA-AAAAGCTTTTCTTTCCACCATTTTTGATAGA
* * * * *
2026672 ATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACTCATACTAA-CCACTATTCTTTTCAAG
838 ATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCC-CCATTCTTTTCAAG
* * * *
2026736 ATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGCT
902 ATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
* * * * **
2026787 TTGGTTTTGCAACAAAGGCTTTCTTCCCAGCAATTTTAGTAAAGTCTAAGTTTATGCCTGTAATG
1 TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
* * *
2026852 AAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAAGCACTATAAACACATTC-
66 AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
* * *
2026916 CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
131 C-CTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTT
*
2026981 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTCCATTC
195 TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAG-TCTCCATTC
* * * * * *
2027045 TTTTCAAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGTTG
259 TTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTG
* * * *
2027110 TCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACA
324 TCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACA
* *
2027175 AACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCTC
389 AACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGTCTTCTC
* ** *
2027239 ATTAGGATACATGATATTGATATTTTGGTTTCGCAACAAAGGCATTT-TTCCCACAAATTTTTGT
453 ATTAGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTGT
* * * * *
2027303 GAAGTCTAAGTTCGTGCCTCAAACGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTG
517 AAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTG
** *
2027368 TGATCAGCAACTATAAACACATTCTCGC-CATTAGGATACATGATATTGA
582 TGATCAGGGACTATAAACACATTCTC-CTCATTAGGATAAATGATATTGA
2027417 AGCTTTGTTT
Statistics
Matches: 10326, Mismatches: 1528, Indels: 387
0.84 0.12 0.03
Matches are distributed among these distances:
929 11 0.00
930 717 0.07
931 57 0.01
932 8 0.00
933 1 0.00
936 1 0.00
939 1 0.00
949 2 0.00
950 26 0.00
951 1506 0.15
952 3270 0.32
953 4650 0.45
954 64 0.01
955 12 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (952 bp):
TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCATGCCTCAAATG
AGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCT
CCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTT
CCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTT
TTCAAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC
GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
CATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
AGGATACACGATATTGATGGTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
CAGGGACTATAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAA
ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATT
CTCTGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCCAAAACACATACCCTTCATTAGGATAC
ATGACATTAATGCTTTGGTGTCTCAAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGGCAC
CATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCG
Found at i:2027258 original size:159 final size:159
Alignment explanation
Indices: 2026563--2027259 Score: 452
Period size: 159 Copynumber: 4.4 Consensus size: 159
2026553 GTAACAGTCT
* * * *
2026563 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACA-T-TGTCGTCATTATGATACATGACATTGAA
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGTCT-TC-TCATTAAGATACATGATATTGAT
* * * * *
2026625 GCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATT-TGTCTCTT
63 GCTTT-GTTTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2026689 AAATAAGACAAACAAGAATACTCATACTAA-CC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * *
2026721 ACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGC
1 -CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATGC
** * * * * * * *
2026786 TTTGGTTTTGCAACAAAGGC-TTTCTTCCCAGCAATTTTAG-TA-AAGTCTAAGTTTATGCCT-G
65 TTT-GTTTCACAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAGAA-TCAAAG-TTATGCCTCT
* * * * *
2026847 T-AATGAA-ACAAACATGGATTCT-AGTAATGATCT
126 TAAAT-AAGACAAACATGAATACTCA-TACTAATCC
* * ** * * * * * * *
2026880 TCATTAATTTT-GTGATTAAGCACTATAAACACATTCCTCTCATTAAGATAAATAATATTGATGA
1 CCATT-CTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATG-
* * ** * * *** *
2026944 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT-CC-CTT
64 CTTTGTTTCACAAGAAAAGCTTTTCTTT-CCACTATTTTTGATAGAATCAAAGTT-ATGCCTCTT
* * * *
2027006 AAATAAGACAAGCATCG-ATTCTTGCA-AC-GATCT
127 AAATAAGACAAACAT-GAATAC-T-CATACTAATCC
* * * * **
2027039 CCATTCTTTTCAAGATTGGGAAGCGA-AAACACATTCCCTTC-C-TTAGGATACATGGCATTGAT
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGT--CTTCTCATTAAGATACATGATATTGAT
*
2027101 GCTTTGTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTT-TGCCTCTT
63 GCTTTGTT-TCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2027165 AAATAAGACAAACTTGAATACTCATACTAATCC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * *
2027198 CCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCTCATTAGGATACATGATATTGAT
1 CCATTCTTTTCAAGATTAGGAACCATAAAC-ACAGTCTTCTCATTAAGATACATGATATTGAT
2027260 ATTTTGGTTT
Statistics
Matches: 408, Mismatches: 91, Indels: 78
0.71 0.16 0.14
Matches are distributed among these distances:
157 10 0.02
158 125 0.31
159 250 0.61
160 18 0.04
161 4 0.01
162 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATGCT
TTGTTTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCC
Found at i:2031057 original size:158 final size:157
Alignment explanation
Indices: 2030353--2031451 Score: 476
Period size: 158 Copynumber: 6.9 Consensus size: 157
2030343 TCGTAATAGT
* * * * * * ** * *
2030353 CTCCATTCTTTTCATGATTGGGAAACAAAAACACATACCCTTCATTAGGATATATGACATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCC-TCATTAGGATACATGATATTGATG
* * * * * ** *
2030418 CTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTCATAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAA
*
2030483 ATAAGAC-AACTTGAATACTCACACTAATC
130 ATAAGACAAACTTGAATA-TCATAC-AATC
* * *
2030512 C-CCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTT-CTCATTAGGATACATGATGTTGA
1 CTCCATTCTTTTT-AAGATTAGGCACCATAAACACA-T-TTCCTCATTAGGATACATGATATTGA
* * * * * *
2030575 TGCTTTGGTTTCGCAA-CAAAGGTTCTAC-TTCCACCAATTTTTG-TAAAGTCTAAGTTCATGCG
63 TGCTTTGGTGTCGCAAGAAAAGCTT-TTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCAT-C-
* *
2030637 TC--AAATGAGACAAACTTGGAT-TCTAGTA-ATGAT-
124 TCTTAAATAAGACAAACTTGAATATC-A-TACA--ATC
* * ** * * * * *
2030670 CTTCATTAATTTTGCA-ATTATGCACAATAAACACATTCTCCTCACTAGGATAAATGATATTGGT
1 CTCCATT-CTTTTTAAGATTAGGCACCATAAACACATT-TCCTCATTAGGATACATGATATTGAT
* * * * * * * *** *
2030734 GATTTTCGT-TTGCATGGAAATCTTTTCTTTGCC-CTATTTTCCTTAATATCAAAGTTCATC-CT
64 G-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCATCTC-
* * * *
2030796 TTAAAGAAGACAAGCATTG-ATCTTCATAACAGT-
126 TTAAATAAGACAAAC-TTGAAT-ATCAT-ACAATC
* * * ** *
2030829 CTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATACCCTTCATTAGGATACATGACATTGAT
1 CTCCATTCTTTTTAAGATTAGGCA-CCATAAACACATTTCC-TCATTAGGATACATGATATTGAT
*
2030893 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTA
64 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTA
*
2030958 AGTAAGACAAACTTGAATAATCATACAATC
129 AATAAGACAAACTTGAAT-ATCATACAATC
* * *
2030988 CTCC-TTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACA-TTTCCTCATTAGGATACATGATATTGATG
* * * * * * * * * * * *
2031052 TTTTGGTTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTTG-TAAAGTCTAACTTCATGC-CTC
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAAAATCAAAGTTCAT-CTCTT
* * *
2031114 AAATACGACAAACATGGAT-TCTATTA-ATGAT-
128 AAATAAGACAAACTTGAATATC-A-TACA--ATC
* ** * * * * * *
2031145 CTTCATTCTTTTTGTGATTAGGCGCTATAAAACATATTCTCCTCAGTATGATGA-ATGATATCGA
1 CTCCATTCTTTTTAAGATTAGGCACCAT-AAACACATT-TCCTCATTAGGAT-ACATGATATTGA
* ** * * * * * * *** *
2031209 TGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCA-TATTTTCCTTAAAATCAAAGTTCATCCC
63 TGCTTTGGTGTCGCA-AGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCATCTC
* ** * * * * *
2031272 TTAAAAAAGACAGGCATCGATTCTCGTAAAAAT-
126 TTAAATAAGACAAAC-TTGAATATCAT-ACAATC
* * * ** * * * * *
2031305 CTCCATTCTTTTCAAGATTGGGAAATAAAAACACA-TACCTTGATTAGGATATATGACATTGATG
1 CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCC-TCATTAGGATACATGATATTGATG
* * * * * ** *
2031369 CTTTAGTGTCGCGAGTAAAGCTTTTCTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAA
65 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAA
2031434 ATAAGACAAACTTGAATA
130 ATAAGACAAACTTGAATA
2031452 CTCTCACTAA
Statistics
Matches: 686, Mismatches: 192, Indels: 126
0.68 0.19 0.13
Matches are distributed among these distances:
155 2 0.00
156 4 0.01
157 62 0.09
158 271 0.40
159 265 0.39
160 71 0.10
161 8 0.01
162 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (157 bp):
CTCCATTCTTTTTAAGATTAGGCACCATAAACACATTTCCTCATTAGGATACATGATATTGATGC
TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAA
TAAGACAAACTTGAATATCATACAATC
Found at i:2031186 original size:476 final size:474
Alignment explanation
Indices: 2030250--2031483 Score: 1662
Period size: 476 Copynumber: 2.6 Consensus size: 474
2030240 TGAGCTTTCA
* *
2030250 ATATTGATGATTTTCTTTTGCGA-GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTAAAGTT
1 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * *
2030314 CAT-CTCTTAAAAAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAA
65 CATCCT-TTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAA
2030378 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
129 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* * *
2030443 CTTTCCATCGTTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGAC-AACTTGAATACTCACAC
194 CTTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATAC
* * * *
2030507 TAATCCCCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACATGATGT
259 TAATCCCC-TTCTTTTT-AGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATAT
* * *
2030572 TGATGCTTTGGTTTCGCAACAAAGGTTCTACTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCG
322 TGATGCTTTGGTTTCACAACAAAGGTTCTA-TTCCACCAATTTTTGTAAAGTCTAACTTCATGCC
* *
2030637 TCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATGCACAATAAAC
386 TCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAAC
2030702 ACATTCTCCTCACTAGGATAAATG
451 ACATTCTCCTCACTAGGATAAATG
* * * *
2030726 ATATTGGTGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
2030791 ATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGC
66 ATCCTTTAAAAAAGACAAGCATCGATTC-TCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * *
2030855 CAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
* * ** * * *
2030920 TTTCCACCATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACTTGAATAATCATAC-
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACT
*
2030984 AATCCTCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTG
260 AATCC-CCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATATTG
* ** * *
2031049 ATGTTTTGGTTTCACATGAAAGGCATT-T-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCATGCC
324 ATGCTTTGGTTTCACAACAAAGG--TTCTATT-CCACCAATTTTTGTAAAGTCTAACTTCATGCC
* ** ** * *
2031112 TCAAAT-ACGACAAACATGGATTCTATTAATGATCTTCATTCTTTTTGTGATTAGGCGCTATAAA
386 TCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAAT-AA
* * * *
2031176 ACATATTCTCCTCAGTATGATGAATG
449 ACACATTCTCCTCACTAGGATAAATG
* * *
2031202 ATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCATATTTTCCTTAAAATCAAAGTT
1 ATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * * *
2031266 CATCCCTTAAAAAAGACAGGCATCGATTCTCGTAAAAATCTCCATTCTTTTCAAGATTGGGAAAT
65 CATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * *
2031331 AAAAACACATA-CCTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
2031395 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTC-TCAC
195 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCAT-AC
* *
2031459 TAATCCGCATTCTTTTCAGGATTAG
259 TAATCC-CCTTCTTTTTAGGATTAG
2031484 TGATGAAAAC
Statistics
Matches: 658, Mismatches: 86, Indels: 28
0.85 0.11 0.04
Matches are distributed among these distances:
474 4 0.01
475 246 0.37
476 383 0.58
477 25 0.04
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
ATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAACA
AAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCT
TTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACTA
ATCCCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACATGATATTGAT
GCTTTGGTTTCACAACAAAGGTTCTATTCCACCAATTTTTGTAAAGTCTAACTTCATGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGGCACAATAAACACATT
CTCCTCACTAGGATAAATG
Found at i:2033128 original size:12 final size:11
Alignment explanation
Indices: 2033106--2033181 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2033096 AGAGAAAGAA
*
2033106 GAGAGAGGAGG
1 GAGATAGGAGG
2033117 GATGATAGGAGG
1 GA-GATAGGAGG
*
2033129 AGAGACAGGA--
1 -GAGATAGGAGG
*
2033139 GAGATAGTA--
1 GAGATAGGAGG
2033148 GAGATAGGAGG
1 GAGATAGGAGG
2033159 GATGATAGGAGG
1 GA-GATAGGAGG
*
2033171 AGAGACAGGAG
1 -GAGATAGGAG
2033182 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2033138 original size:24 final size:24
Alignment explanation
Indices: 2033105--2033190 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2033095 AAGAGAAAGA
*
2033105 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2033129 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2033147 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2033171 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2033191 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2033157 original size:42 final size:42
Alignment explanation
Indices: 2033096--2033214 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2033086 TAGCCCTCAA
* *
2033096 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2033138 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2033180 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2033215 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2034573 original size:154 final size:157
Alignment explanation
Indices: 2034212--2034576 Score: 373
Period size: 158 Copynumber: 2.3 Consensus size: 157
2034202 ATTAGGCATC
* * * * * * ** * * * *
2034212 ATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGAAACAAAGGCTTTCT
1 ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
* *
2034277 TCCCACCAATTATTGTAAAGTCTAAGTTCGCGCCTCAAATAAGACAAACATGAAATCTAGTAATG
66 TCCCACCAATTATTGTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAA-G
**
2034342 ATCTTTTTTCTTTTTGTGATAAGGCACT
130 ATCTTCATTCTTTTTGTGATAAGGCACT
* * ** *
2034370 ATAAACACATTCTCCTCATTAGGATACATGATTTTGATATTTTGGTTTTGCAACAAAGGCTTTCA
1 ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
* * * * ** * *
2034435 TCTCGCCAATT-TTGGTAAAGTCTAAGTTCATGCC-CAAAGGAGACAAATGTGTATTCTAGT-A-
66 TCCCACCAATTATT-GTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAAG
*
2034496 ATCTTCATTGTTTTTGTGATAAGGCACT
130 ATCTTCATTCTTTTTGTGATAAGGCACT
*
2034524 ATAAACACATTCTCCTTATTAAGG-TAAAAGACATTGATGATTTT-CTTTTGCAA
1 ATAAACACATTCTCCTCATT-AGGATAAAAGACATTGAT-ATTTTGCTTTTGCAA
2034577 GGAAATCTTT
Statistics
Matches: 176, Mismatches: 28, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
154 62 0.35
155 8 0.05
156 1 0.01
157 22 0.12
158 83 0.47
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.36
Consensus pattern (157 bp):
ATAAACACATTCTCCTCATTAGGATAAAAGACATTGATATTTTGCTTTTGCAACAAAGGCTTTCA
TCCCACCAATTATTGTAAAGTCTAAGTTCACGCCTCAAAGAAGACAAACATGAAATCTAGTAAGA
TCTTCATTCTTTTTGTGATAAGGCACT
Found at i:2036871 original size:158 final size:157
Alignment explanation
Indices: 2036686--2037032 Score: 471
Period size: 157 Copynumber: 2.2 Consensus size: 157
2036676 TTCTTTTCAG
* * * * *
2036686 GATTAGGCACCATAAATGA-ATTTTTCTCTTTAGGATACACGATATTGATGTTTTGGTTTCACAA
1 GATTAGGCACTATAAA-CACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAA
* * * * **
2036750 GAAAGGCATTTTTCCCAACTATTTTTATAAAGTCTAAGTTCGTGCCTCAAATGCGACAAACATGG
65 CAAAGGCATTTTTCCCAACGATTTTT-GAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGG
2036815 ATTCTACCAATGATCTTCATTCATTTTGT
129 ATTCTACCAATGATCTTCATTCATTTTGT
* *
2036844 GATTAGGCACTATAAACACATTCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAC
1 GATTAGGCACTATAAACACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAC
* ** * *
2036909 AAAGGCTTTTTTTGCACCGATTTTTGAAATTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
66 AAAGGCATTTTTCCCAACGATTTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
** *
2036974 TCTAGTAATGATCTTCATTCTTTTTGT
131 TCTACCAATGATCTTCATTCATTTTGT
*
2037001 GATTAGGCACTATAAACACATTCTCCTCATTA
1 GATTAGGCACTATAAACACATTCTTCTCATTA
2037033 TGATGAATGA
Statistics
Matches: 166, Mismatches: 22, Indels: 3
0.87 0.12 0.02
Matches are distributed among these distances:
157 91 0.55
158 75 0.45
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (157 bp):
GATTAGGCACTATAAACACATTCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCACAAC
AAAGGCATTTTTCCCAACGATTTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGAT
TCTACCAATGATCTTCATTCATTTTGT
Found at i:2037005 original size:157 final size:155
Alignment explanation
Indices: 2036231--2037046 Score: 548
Period size: 158 Copynumber: 5.2 Consensus size: 155
2036221 CCATAAATAG
* * * *
2036231 TCTTCTCATTAGGATACACGATATTGATGCTTTGGTTTCAC-AGCAAAGGC-CTTTTCCCACCAA
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAG-AAAGGCTTTTTTTCCACCTA
* * * *
2036294 TTTTGTTAAAGTCTAAGTTTGTGCCTCAAATGAGACAAACATGGATTCTAGTAACAATCTTCATT
65 TTTT-TGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATT
2036359 CTTTTTGTGATTAGGCACTATAAACACAT
127 CTTTTTGTGATTAGGCACTATAAACACAT
* * * ** ** ** * * *
2036388 T-TTCTTCATTAGGATAAATGACATTGATGATTTTTTTTTGGCTTGGAAA-TCATTTCTTTAC-C
1 TCTTC-TCATTAGGATACATGATATTGATG-CTTTGGTTTCAC-AAGAAAGGC-TTTTTTTCCAC
* ** * ** ** * * *
2036450 CTATTTTCCTTAATA-TGAAAGTTC-ATCCCTTGAATAAGACAGGCATTGATCCTCATAACAGTC
62 CTATTTT--TGAA-AGTCTAAGTTCGA-GCCTCAAATAAGACAAACATGGATTCT-ATAA-AATC
* * * *
2036513 TCCATTCTTTTTAG-GATTGGGAAACCA-AAACACAT
121 TTCATTCTTTTT-GTGATTAGG-CACTATAAACACAT
* * * * * * * * *
2036548 AC-CCTTCGTTAGGTTACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTCTTCTTTCTACC-
1 TCTTC-TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCT-TTTTTTCCACCT
* * * * * * *
2036611 ATTTTTGATAAAATC-AATGTTC-ATCTCTTAAATAAGATAAACATGAATACTCATACAAATCCT
64 ATTTTTG--AAAGTCTAA-GTTCGAGC-CTCAAATAAGACAAACATGGATTCT-ATA-AAATCTT
* * *
2036674 CATTCTTTTCAG-GATTAGGCACCATAAATGA-AT
123 CATTCTTTT-TGTGATTAGGCACTATAAA-CACAT
* * * * * * *
2036707 TTTTCTCTTTAGGATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCAACTAT
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCACCTAT
* * ** * *
2036772 TTTTATAAAGTCTAAGTTCGTGCCTCAAATGCGACAAACATGGATTCTACCAATGATCTTCATTC
66 TTTT-GAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATTC
*
2036837 ATTTTGTGATTAGGCACTATAAACACAT
128 TTTTTGTGATTAGGCACTATAAACACAT
* * * *
2036865 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTTTTTGCACCGAT
1 TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCACCTAT
* *
2036930 TTTTGAAATTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCT
66 TTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTA-TAA-AATCTTCATTCT
2036995 TTTTGTGATTAGGCACTATAAACACAT
129 TTTTGTGATTAGGCACTATAAACACAT
* *
2037022 TCTCCTCATTATGATGA-ATGATATT
1 TCTTCTCATTAGGAT-ACATGATATT
2037047 TGTTAGGATC
Statistics
Matches: 505, Mismatches: 119, Indels: 70
0.73 0.17 0.10
Matches are distributed among these distances:
156 3 0.01
157 128 0.25
158 145 0.29
159 129 0.26
160 94 0.19
161 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (155 bp):
TCTTCTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTTTTTCCACCTAT
TTTTGAAAGTCTAAGTTCGAGCCTCAAATAAGACAAACATGGATTCTATAAAATCTTCATTCTTT
TTGTGATTAGGCACTATAAACACAT
Found at i:2037358 original size:20 final size:19
Alignment explanation
Indices: 2037335--2037408 Score: 78
Period size: 19 Copynumber: 3.7 Consensus size: 19
2037325 CACACCCAGA
*
2037335 TGTATCGATACATGCTGCTT
1 TGTATCGATACATG-TGCAT
* *
2037355 TGTATTGATACATGTTCAT
1 TGTATCGATACATGTGCAT
2037374 TGTATCGATACATG-GACAAAT
1 TGTATCGATACATGTG-C--AT
2037395 TGTATCGATACATG
1 TGTATCGATACATG
2037409 AAATTAGCAG
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
19 17 0.37
20 13 0.28
21 16 0.35
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38
Consensus pattern (19 bp):
TGTATCGATACATGTGCAT
Found at i:2039553 original size:473 final size:474
Alignment explanation
Indices: 2038239--2039930 Score: 2273
Period size: 473 Copynumber: 3.6 Consensus size: 474
2038229 ATATTGATGA
* * *
2038239 TTTTCTTTTGCGA-GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTAAAGTTCATCTCTTAA
1 TTTTCTTTTGC-ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* *
2038303 AAAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAACAAAAACACAT
65 AAAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACAT
* * *
2038368 ACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCATCGT
130 ACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCACCAT
*
2038433 TTTTAGTAGAATCAAAGTTTGTCTCATAAATAAGAC-AACTTGAATACTCACACTAATCCCCATT
195 TTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCACACTAATCCCCATT
* * * *
2038497 CTTTTTCAAGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACACGATGTTGATGCTTTGG
260 C-TTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGG
* *
2038562 TTTCGCAACAAAGGTTCTACTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGAC
324 TTTCGCAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGAC
* *
2038627 AAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATGCACAATAAACACATTCTCCTC
389 AAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCTCCTC
*
2038692 ACTAGGATAAATGATATTGGTGA
454 ACTAGGATAAATGATA-T-GTGT
* * * *
2038715 TTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTCATCCTTTAAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * * * *
2038780 GAAGACAAGCATTGA-TCTTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACAT
66 AAAGACAAGCATCGATTC-TCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACAT
* *
2038844 ACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACCAT
130 ACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCACCAT
* * ** * * * * * *
2038909 TTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACCTGAATAATCATACAAATCCTCC-T
195 TTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCACACTAATCC-CCAT
* * *
2038973 TCTTTT-AGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTGATGTTTTGG
259 TCTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGG
* ** * * * * * * *
2039037 TTTCACATGAAAGGCATTT-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCGTGCCTCAAAT-ACG
324 TTTCGCAACAAAGG-TTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGA-G
* * * * * * *
2039100 ACAAACATGGATTCTATTAATGATCTTCATT-CTTTTGTGATTAGGCGCTATAAACATATTCTCC
387 ACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCTCC
* * *
2039164 TCAGTATGATGAATGATATCGATGT
452 TCACTAGGATAAATGATAT-G-TGT
2039189 TTTTCTTTTGCATGGATAA-CTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
1 TTTTCTTTTGCATGGA-AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAA
* * * * *
2039253 AAAAGACAGGCATTGATTCTCGTAAAAATCTCCATTCTTTTCAAGATTGGGAAATAAAAACACAT
65 AAAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACAT
* * * *
2039318 A-CCTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTCTTTCCACCA-
130 ACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCACCAT
* *
2039381 TTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCTCACTAATCCGCATT
195 TTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCACACTAATCCCCATT
*
2039446 CTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGAGACACGATATTGATGCTTTGGT
260 CTTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGT
*
2039511 TTCGGAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACA
325 TTCGCAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACA
*
2039576 AACTTGGATTCTAGCAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCTCCTCA
390 AACTTGGATTCTAGTAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCTCCTCA
*
2039641 TTAGGATAAATGATAT-TGCT
455 CTAGGATAAATGATATGTG-T
* * * * *
2039661 ATTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAA
1 TTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
* * * *
2039726 TAAGACAAGCAACGATTCTCGTAATAGTCTCTATTCTTTTTAAGATTGGGAAGAC-AAAACACAT
66 AAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAA-ACAAAAACACA-
* * * *
2039790 TGCCC-TCATTAGGATACATGACATTAATGCTTTGGTGTCATC-AAAAAAGCTTTTCTTTCCACC
129 TACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCGAGAAAAGCTTTTCTTTCCACC
* * * *
2039853 ATTTTTGACAGAATCAAAGTTT-TCTCTTAAATAAGACAAACATGAATACTCACACTAATCCCCA
193 ATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCACACTAATCCCCA
*
2039917 TTCTTTTTAGGATT
258 TTCTTTTCAGGATT
2039931 TGGAACAGTG
Statistics
Matches: 1046, Mismatches: 149, Indels: 45
0.84 0.12 0.04
Matches are distributed among these distances:
471 5 0.00
472 169 0.16
473 289 0.28
474 222 0.21
475 133 0.13
476 204 0.20
477 22 0.02
478 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
TTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAA
AAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAACAAAAACACATA
CCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCTTTCCACCATT
TTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCACACTAATCCCCATTC
TTTTCAGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACACGATATTGATGCTTTGGTT
TCGCAACAAAGGTTTTATTTCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACAA
ACTTGGATTCTAGTAATGATCTTCATTAATTTTGCGATTAGGCACAATAAACACATTCTCCTCAC
TAGGATAAATGATATGTGT
Found at i:2039656 original size:158 final size:156
Alignment explanation
Indices: 2038360--2039658 Score: 590
Period size: 158 Copynumber: 8.2 Consensus size: 156
2038350 TGGGAAACAA
* * * * *
2038360 AAACACATAC-CCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCT
1 AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTTTTCT
* * * *
2038424 TTCCATC-GTTTTTAGTAGAA-TCAAAGTT--TGTCTCATAAATAAGAC-AACTTGAATACTCA-
64 TTCCACCAATTTTT-GTA-AAGTCAAAGTTCATG-CTC--AAATAAGACAAACTTGGATTCT-AG
* * ** * *
2038483 CACTAATCCCCATTCTTTTTCAAGATTAGTCACCAT
123 CAATGATCTTCATTCTTTTGC--GATTAGGCACCAT
* * * * * * * *
2038519 AAACATAGTCTTCTCATTAGGATACACGATGTTGATGCTTTGGTTTCGCAACAAAGGTTCTAC-T
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGCTT-TTCTT
* * *
2038583 TCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACAAACTTGGATTCTAGTAATGA
65 TCCACCAATTTTTGTAAAGTCAAAGTTCATGC-TCAAATAAGACAAACTTGGATTCTAGCAATGA
* * * *
2038648 TCTTCATTAATTTTGCAATTATGCACAAT
129 TCTTCATT-CTTTTGCGATTAGGCACCAT
* * * * * * *
2038677 AAACACATTCTCCTCACTAGGATAAATGATATTGGTGATTTTCGTTT-GCATGGAAATCTTTTCT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATG-CTTTGGTTTCGCA-AGAAAGCTTTTCT
* * * * * *
2038741 TTGC-CCTATTTTCCT-TAATA-TCAAAGTTCATCCTTTAAAGAAGACAAGCATT-GATCTTCAT
64 TTCCACCAATTTT--TGTAA-AGTCAAAGTTCATGC-TCAAATAAGACAAAC-TTGGA--TTC-T
* * * *
2038802 AAC-A-G-TCTCCATTCTTTT-CAAGATTGGGAAGCCA-
121 AGCAATGATCTTCATTCTTTTGC--GATTAGGCA-CCAT
* * * *
2038836 AAACACATAC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCT
1 AAACACATTCTCC-TCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTTTTCT
* * * *
2038900 TTCCACC-ATTTTTGATAAAATCAAAGTTCAT-CTCTTAAGTAAGACAAACCTGAATAATCATA-
64 TTCCACCAATTTTTG-TAAAGTCAAAGTTCATGCTC--AAATAAGACAAACTTGGAT--TC-TAG
* *
2038962 CAA--ATCCTCCTTCTTTTAG-GATTAGGCACCAT
123 CAATGATCTTCATTCTTTT-GCGATTAGGCACCAT
* * * * * *
2038994 AAACAAAGTT-TTCTCATTAGGATACATGATATTGATGTTTTGGTTTCACATGAAAGGCATTT-T
1 AAACACA-TTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAA-GCTTTTCT
* * * * * * * * **
2039057 TCCCAGCAGTTTTTGTAAAGTCTAACTTCGTGCCTCAAATACGACAAACATGGATTCTATTAATG
64 TTCCACCAATTTTTGTAAAGTCAAAGTTCATG-CTCAAATAAGACAAACTTGGATTCTAGCAATG
* * *
2039122 ATCTTCATTCTTTTGTGATTAGGCGCTAT
128 ATCTTCATTCTTTTGCGATTAGGCACCAT
* * * * * ** * *
2039151 AAACATATTCTCCTCAGTATGATGA-ATGATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTC
1 AAACACATTCTCCTCATTAGGAT-ACATGATATTGATGCTTTGGTTTCGCA-AGA-AAGCTTTTC
** * * * * * ** * *
2039214 TTT-GTCCTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAAAAAGACAGGCATT-GATTCTCGT
63 TTTCCACCAATTTT--TGTAAAGTCAAAGTTCAT-GCTCAAATAAGACAAAC-TTGGATTCTAGC
** * * * ** *
2039276 AAAAATCTCCATTCTTTT-CAAGATTGGGAAATAA
124 AATGATCTTCATTCTTTTGC--GATTAGGCACCAT
* * * * * * * *
2039310 AAACACATAC-CTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTCTT
1 AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAG-AAAGCTTTTCTT
** * * ** *
2039374 TCCACC-ATTTTAATAGAA-TCAAAGTT--TGTCTCATAAATAAGACAAACTTGAATACTCTCAC
65 TCCACCAATTTTTGTA-AAGTCAAAGTTCATG-CTC--AAATAAGACAAACTTGGATTCTAGCAA
* **
2039435 TAATCCGCATTCTTTT-CAGGATTAGGCACCAT
126 TGATCTTCATTCTTTTGC--GATTAGGCACCAT
* * * * * * * *
2039467 AAACATAGTT-TTCTCATTAGGAGACACGATATTGATGCTTTGGTTTCGGAACAAAGGTTTTATT
1 AAACACA-TTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGCTTTTCTT
* *
2039531 TCCACCAATTTTTGTAAAGTCTAAGTTCATGCGTCAAATGAGACAAACTTGGATTCTAGCAATGA
65 TCCACCAATTTTTGTAAAGTCAAAGTTCATGC-TCAAATAAGACAAACTTGGATTCTAGCAATGA
* *
2039596 TCTTCATTAATTTTGCGATTAGGCACAAT
129 TCTTCATT-CTTTTGCGATTAGGCACCAT
*
2039625 AAACACATTCTCCTCATTAGGATAAATGATATTG
1 AAACACATTCTCCTCATTAGGATACATGATATTG
2039659 CTATTTCTTT
Statistics
Matches: 838, Mismatches: 221, Indels: 163
0.69 0.18 0.13
Matches are distributed among these distances:
154 2 0.00
155 7 0.01
156 5 0.01
157 192 0.23
158 360 0.43
159 242 0.29
160 24 0.03
161 4 0.00
162 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (156 bp):
AAACACATTCTCCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGCTTTTCTTT
CCACCAATTTTTGTAAAGTCAAAGTTCATGCTCAAATAAGACAAACTTGGATTCTAGCAATGATC
TTCATTCTTTTGCGATTAGGCACCAT
Found at i:2041343 original size:476 final size:476
Alignment explanation
Indices: 2040440--2049130 Score: 10713
Period size: 476 Copynumber: 18.3 Consensus size: 476
2040430 TGTGGACTGG
* * * *
2040440 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2040505 AACATGGATTCAACTAATGATC-TCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * *
2040569 TTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTTCCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2040634 AAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * *
2040699 GATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTTGC
261 GATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCGC
* * *** *
2040761 GAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
323 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2040826 TGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATT
388 TGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
2040889 AGGATACATAATATTGACGCTTTAGT
451 AGGATACATGATATTGATGCTTTGGT
* ** * *
2040915 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * *
2040980 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * *
2041045 GTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2041110 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* *
2041175 GATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCAA
261 GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAA
* *
2041239 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAG
325 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2041304 AATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGA
390 AATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
2041369 TACACGATATAGATGGTTTGCT
455 TACATGATATTGATGCTTTGGT
* * *
2041391 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
2041456 AACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACACATTCTCCTT
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACACATTCTCCTC
* * ** *
2041520 ATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* *** *
2041585 AAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATTCTCAAAAACATTCTCCATTCTTTT
195 AAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTT
* **
2041649 CAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCA
258 CAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-
* * * *
2041713 TCAA-AAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
321 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
2041777 CATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATT
386 CATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
*
2041842 AGGATACACT-ATATTGATGCGTTGGT
451 AGGATACA-TGATATTGATGCTTTGGT
* * * *
2041868 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2041933 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * *
2041998 TTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTTTCCTT
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTTTCCTT
* * * **
2042062 AAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCTTTTCA
195 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * * *
2042127 AGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTTG
260 AGATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCG
* * *** *
2042189 CGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
322 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
2042253 ATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCAT
387 ATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2042316 TAGGATACAT-AGTATTGACGCTTTAGT
450 TAGGATACATGA-TATTGATGCTTTGGT
* ** * *
2042343 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * *
2042408 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * *
2042473 GTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2042538 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* *
2042603 GATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCAA
261 GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAA
* * *
2042667 AAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAG
325 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2042732 AATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGA
390 AATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
2042797 TACACGATATAGATGGTTTGCT
455 TACATGATATTGATGCTTTGGT
* * *
2042819 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
2042884 AACATGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACACATTCTCCTT
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACACATTCTCCTC
* * ** *
2042948 ATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* ** *
2043013 AAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTTT
195 AAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTT
* * ** *
2043077 CAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGTGTCA
258 CAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-
* *
2043141 TCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
321 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
2043205 CATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATT
386 CATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
*
2043270 AGGATACACT-ATATTGATGCGTTGGT
451 AGGATACA-TGATATTGATGCTTTGGT
* * * *
2043296 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2043361 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * *
2043426 TTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTTTCCTT
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTTTCCTT
* * * **
2043490 AAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCTTTTCA
195 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * * *
2043555 AGATTGGGAA-CCAATAACAC-GTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTTG
260 AGATTGGGAAGCCAA-AACACATTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCG
* * *** *
2043617 CGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
322 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
2043681 ATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCAT
387 ATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2043744 TAGGATACAT-AGTATTGACGCTTTAGT
450 TAGGATACATGA-TATTGATGCTTTGGT
* ** * *
2043771 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * *
2043836 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * *
2043901 GTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2043966 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCATTCCTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* *
2044031 GATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCAA
261 GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAA
* *
2044095 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAG
325 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2044160 AATACTCATCCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGA
390 AATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
2044225 TACACGATATAGATGGTTTGCT
455 TACATGATATTGATGCTTTGGT
* * * *
2044247 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTACGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-AC
* * *
2044312 AAACATGGATTCTAGTAATAATCTTCGTTCTTTTTGTGATAAGGG-ACTATAAACACATTCTCCT
65 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACACATTCTCCT
* * * ** *
2044376 TATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCT
129 CATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCT
* ** *
2044441 TAAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTT
194 TAAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTT
* * ** *
2044505 TCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGTGTC
257 TCAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC
* *
2044569 ATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC-A
321 -GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * *
2044632 ACATGAATAGTCACACTAATCCCCATTCTTTT-AGGATTTGGAACCATAAACATAGTCTTCTCAT
385 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
*
2044696 TAGGATACACT-ATATTGATGCGTTGGT
450 TAGGATACA-TGATATTGATGCTTTGGT
* * * *
2044723 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2044788 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * *
2044853 TTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTTTCCTT
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTTTCCTT
* * **
2044917 AAAATTAAAGTTCAT-CCTTA-AAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCTTTTCA
195 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * * *
2044980 AGATTGGGAA-CCAATAACAC-GTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTTG
260 AGATTGGGAAGCCAA-AACACATTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCG
* * *** *
2045042 CGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
322 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * *
2045106 ATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCAT
387 ATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
* *
2045169 TAGGATACAT-AGTATTGACGCTTTAGT
450 TAGGATACATGA-TATTGATGCTTTGGT
* ** * *
2045196 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * *
2045261 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * *
2045326 GTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2045391 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCATTCCTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* *
2045456 GATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCAA
261 GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAA
* * * *
2045520 GAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAAAAG
325 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* *
2045585 AATACTCATCCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGA
390 AATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGA
* * * *
2045650 TACACGATATAGATGGTTTGCT
455 TACATGATATTGATGCTTTGGT
* * * *
2045672 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTACGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
2045737 AACATGGATTCTAGTAATAATCTTCGTTCTTTTTGTGATAAGGG-ACTATAAACACATTCTCCTT
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACACATTCTCCTC
* * ** *
2045801 ATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* ** *
2045866 AAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTTT
195 AAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTT
* * ** *
2045930 CAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGTGTCA
258 CAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-
* *
2045994 TCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
321 GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA
* * * * * *
2046058 CATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATT
386 CATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
*
2046123 AGGATACACT-ATATTGATGCGTTGGT
451 AGGATACA-TGATATTGATGCTTTGGT
* * * *
2046149 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2046214 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * * * *
2046279 TTAGGATGAATAACATTGATTATCTTCTTTTGTGCGAAAATCTTTT-GTTGCCCTGTTTTACTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2046343 AAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * *
2046408 GATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGTTGC
261 GATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCGC
* *** *
2046470 GAGAAAAGCTTTTCTTT-CATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
323 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2046534 TGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATT
388 TGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
* * *
2046597 AGGATACATAATATTGACGCTTTAGT
451 AGGATACATGATATTGATGCTTTGGT
* * *
2046623 TTTGTGAA-AAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGAC
1 TTCG-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * ** * * *
2046687 GAACATGGATTCGAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTT
65 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTC
* * * * *
2046752 AGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * * *
2046817 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCTATTCCTTTCA
195 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * *
2046882 AGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTTGCA
260 AGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCA
* *
2046946 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAA
324 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2047011 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGG
389 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* * * *
2047076 ATACACGATATAGATGGTTTGCT
454 ATACATGATATTGATGCTTTGGT
* * * *
2047099 TTCTCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
2047164 AACCTGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGG-ACTATAAACACATTCTCCTT
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT-TGGGCACTATAAACACATTCTCCTC
* * * ** *
2047228 ATTAGGATAAATCATATTGATGATTTTCTTTTGCATGATAATCTTTTCTTTGTACTATTATCCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* ** *
2047293 AAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTTT
195 AAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTT
* **
2047357 CAAGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCA
258 CAA-GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-
* * *
2047421 TCAA-AAAAGCTTTTCTTTCCATCGA-TTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAA
321 GCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAA
* * * * * *
2047484 ACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCAT
385 ACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCAT
*
2047549 TAGGATACACT-ATATTGATGCGTTGGT
450 TAGGATACA-TGATATTGATGCTTTGGT
* * * *
2047576 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * **
2047641 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * * * * * *
2047706 TTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTTCCTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * * *
2047771 AAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * * *
2047836 GATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGAAT-CTGTGACATTAATGCTTTGGTGTTGC
261 GATTGGGAAGCCAAAACACA-TTG-CCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCGC
* * *** *
2047898 GAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
323 AAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2047963 TGAATAC-C-TACGCTAATCCCCATTCTTTTCAATATTAGGCACCATACACAGAGTCTTCTCATT
388 TGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
* ** *
2048026 AGGATACATAATATTGACACTTTAGT
451 AGGATACATGATATTGATGCTTTGGT
* ** * * *
2048052 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * *
2048117 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
* * *
2048182 GTAGGATAAATGATATTGACGATTTTC-TTT---TG----------C---G---T-TTTT-CTTA
131 TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
*
2048225 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * * *
2048290 GATTGGGAAGCCAAAACACATTGTCGTCATTATGATACATGACATTGAA-GCTTTGGTATCACAA
261 GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCGCAA
* * *
2048354 GAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAG
325 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATG
* * *
2048419 AATACTCATACTAA-CCACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAAG
390 AATACTCATACTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGG
*
2048483 ATACACGATATTGATGCTTTGGT
454 ATACATGATATTGATGCTTTGGT
* * * ** ** *
2048506 TTTGCAACAAAGGCTTTCTTCCCAGCAATTTTAGTAAAGTCTAAGTTTATGCCTGTAATGAAACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** **
2048571 AACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAAGCACTATAAACACATTC-CTCTC
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTC-CTC
* *
2048635 ATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTT
130 ATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* *
2048700 AAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTCCATTCTTTTC
195 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAG-TCTCCATTCTTTTC
* * * * * * *
2048764 AAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTTGTTGTCACA
259 AAGATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCA
* * * *
2048829 AGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACTT
324 AGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
*
2048894 GAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCTCATTAG
389 GAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGTCTTCTCATTAG
**
2048958 GATACATGATATTGATATTTTGGT
453 GATACATGATATTGATGCTTTGGT
* * * *
2048982 TTCGCAACAAAGGCATTT-TTCCCACAAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAACGCGAC
1 TTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * **
2049046 AAACATGGATTCTACTAATGATCTTCATTCATTTTGTGA-TCAGCAACTATAAACACATTCTCGC
65 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGC-ACTATAAACACATTCTC-C
* *
2049110 -CATTAGGATACATGATATTGA
128 TCATTAGGATAAATAATATTGA
2049131 AGCTTTGTTT
Statistics
Matches: 7007, Mismatches: 1033, Indels: 351
0.84 0.12 0.04
Matches are distributed among these distances:
453 3 0.00
454 356 0.05
455 19 0.00
456 6 0.00
458 2 0.00
459 1 0.00
462 1 0.00
468 1 0.00
470 1 0.00
471 47 0.01
472 108 0.02
473 247 0.04
474 297 0.04
475 1326 0.19
476 2664 0.38
477 1764 0.25
478 159 0.02
479 5 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (476 bp):
TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTGGGCACTATAAACACATTCTCCTCA
TTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
GATTGGGAAGCCAAAACACATTGCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCGCAAG
AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGA
ATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGAT
ACATGATATTGATGCTTTGGT
Found at i:2041986 original size:953 final size:949
Alignment explanation
Indices: 2040440--2049130 Score: 10766
Period size: 953 Copynumber: 9.2 Consensus size: 949
2040430 TGTGGACTGG
* * * *
2040440 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
2040505 AACATGGATTCAACTAATGATC-TCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
* * * * * * * *
2040569 TTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTGTTTTCCTTA
131 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * * *
2040634 AAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * * *
2040699 GATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGT-TGCG
260 GATTGGGAACCCAAAACACATACCCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCT-C-
* * * *
2040762 AGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
322 AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * *
2040827 GAATA-CCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAG
387 GAATAGTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * **
2040891 GATACA-TAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
451 GATACACT-ATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * ** *
2040955 CTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATT
515 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATT
* * * * * *
2041020 GGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAA
580 AGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAA
* * *
2041085 TCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATAC
645 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTC
* * *
2041150 TTGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACAT
710 TTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACAT
2041215 GACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
775 GACATT-AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * *
2041279 TTGTCTCTTAAATAAGACAAAAAAGAATGCTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
839 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
* *
2041344 CATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTGCT
904 CATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTTTG-T
* * *
2041391 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
2041456 AACATAGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
* * ** *
2041521 TTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTA
131 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* *** *
2041586 AAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCCATTCTTTTCA
196 AAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTTCA
2041651 AGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCATC
259 A-GATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-TC
*
2041715 AAAAAAGCTTTTCTTTCCATCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
322 AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
2041780 GAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGG
387 GAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* *
2041845 ATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCT
452 ATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
2041910 AAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAG
517 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAG
* * * * * *
2041975 GCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATC
582 GCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATC
* * * * **
2042040 TTTT-TGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCT
647 TTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCT
* *
2042104 TGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGGAT-CT
711 TGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCGTTAGGATAC-
* * * * *** *
2042166 GTGACATTAATGCTTTGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAG
773 ATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
*
2042230 TTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAGG
838 TTTGTCTCTTAAATAAGACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGG
* * * * *
2042293 CACCATACACAGAGTCTTCTCATTAGGATACA-TAGTATTGACGCTTTAGT
901 CACCATAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGGTTT-GT
* ** * *
2042343 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * * *
2042408 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGAT-TGGGCACAATAAACACATTCTCCTC
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGG-ACTATAAACACATTCTCCTC
* * * *
2042472 AGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTT
130 ATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * * *
2042537 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCCATTCCTTTCA
195 AAAATCAAAGTTCATCCCTTA-ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* ** * * *
2042602 AGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCA
259 AGATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCTC-
* * * *
2042666 AAAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAAAA
322 AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2042731 GAAT-GCTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAG
387 GAATAG-TCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * *
2042795 GATACACGATATAGATG-GTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGT
451 GATACACTATATTGATGCG-TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * *
2042859 CTAAGTTCGTGACTCAAATGAGAAAAACATGGATTCTAGTAATAATCTTCATTCTTTTTGTGATA
515 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATT
* * * *
2042924 AGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAA
580 AGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAA
** * *
2042989 TCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATT
645 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATT
** * * * ** * *
2043053 CTCAATAACATTCTCCATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATA
709 CT-TGTAACAGTCTCCATTCTTTTCAA-GATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATA
* *
2043117 CATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAA
772 CATGACATTAATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * * * *
2043181 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGG
836 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGG
* * *
2043246 AACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCGTTGGT
901 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG-GTTTGT
* * * *
2043296 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
2043361 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
* * * * * * * *
2043426 TTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAATCTTTT-TGTTGCCCTGTTTTCCTT
131 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCTATTTTCCTT
* * **
2043490 AAAATTAAAGTTCATCCCTTAAAAAAGACAAGTGTCGATTCTTGTAACAGTCTCCATTCTTTTCA
195 AAAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* * * *
2043555 AGATTGGGAA-CCAATAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGT-TG
259 AGATTGGGAACCCAA-AACACATACCCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCT-
* * * *
2043617 CGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
321 C-AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * *
2043681 ATGAATA-CCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATT
385 ATGAATAGTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATT
* * * * **
2043745 AGGATACA-TAGTATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
449 AGGATACACTA-TATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAA
* * ** *
2043809 GTCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGA
513 GTCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGA
* * * * * *
2043874 TTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGA
578 TTAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAA
* *
2043939 AATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTAT
643 AATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGAT
* * *
2044004 TCTTGTAACAGCCTCCATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATAC
708 TCTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATAC
2044069 ATGACATTGAA-GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
773 ATGACATT-AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
* * *
2044133 GTTTGTCTCTTAAATAAGACAAAAAAGAATACTCATCCTAATCCCCATTCTTTTCAAGATTAGGC
837 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGC
* *
2044198 ACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTGCT
902 ACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTTTG-T
* * * *
2044247 TTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTACGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAG-AC
* * * *
2044312 AAACATGGATTCTAGTAATAATCTTCGTTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTT
65 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTC
* * ** *
2044377 ATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTT
130 ATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* ** *
2044442 AAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTTTC
195 AAAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTTC
* *
2044507 AAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTTTGGTGTCAT
258 AA-GATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-T
* * *
2044571 CAAAAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGAC-AACA
321 CAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACA
* * *
2044635 TGAATAGTCACACTAATCCCCATTCTTTT-AGGATTTGGAACCATAAACATAGTCTTCTCATTAG
386 TGAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* *
2044699 GATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTC
451 GATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
* * * * *
2044764 TAAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCA
516 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* * * * * *
2044829 GGCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGTGAAAAT
581 GGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAAT
* * * **
2044894 CTTTT-TGTTGCCCTGTTTTCCTTAAAATTAAAGTTCAT-CCTTA-AAAAGACAAGTGTCGATTC
646 CTTTTCT-TTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTC
* *
2044956 TTGTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAATAACAC-GTGCCCTTCTTTAGGAT-C
710 TTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA-AACACATTG-CCTTCGTTAGGATAC
* * * * *** *
2045018 TGTGACATTAATGCTTTGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAA
773 -ATGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAA
*
2045082 GTTTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAAAATTAG
837 GTTTGTCTCTTAAATAAGACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAG
* * * * *
2045145 GCACCATACACAGAGTCTTCTCATTAGGATACA-TAGTATTGACGCTTTAGT
900 GCACCATAAACATAGTCTTCTCATTAGGATACACGA-TATTGATGGTTT-GT
* ** * *
2045196 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * * *
2045261 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGAT-TGGGCACAATAAACACATTCTCCTC
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGG-ACTATAAACACATTCTCCTC
* * * *
2045325 AGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTATTTTTCTT
130 ATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
* * *
2045390 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCATTCCTTTCA
195 AAAATCAAAGTTCATCCCTTA-ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* ** * * *
2045455 AGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACATGACATTGAA-GCTTTGGTGTCGCA
259 AGATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCTCA
* * * * * *
2045519 AGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAAGACAAAAAA
323 A-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* *
2045584 GAATACTCATC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAG
387 GAATAGTCA-CACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * *
2045648 GATACACGATATAGATG-GTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGT
451 GATACACTATATTGATGCG-TTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGT
* * * * * *
2045712 CTAAGTACGTGACTCAAATGAGAAAAACATGGATTCTAGTAATAATCTTCGTTCTTTTTGTGATA
515 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATT
* * * *
2045777 AGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAA
580 AGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAA
** * *
2045842 TCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTT-GAATAAGACAAGCAACGATT
645 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAG-ATAAGACAAGCATCGATT
** * * * ** * *
2045906 CTCAATAACATTCTCCATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATA
709 CT-TGTAACAGTCTCCATTCTTTTCAA-GATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATA
* *
2045970 CATGACATTAATGCTTTGGTGTCATCAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAA
772 CATGACATTAATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * * * *
2046034 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGG
836 AGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGG
* * *
2046099 AACCATAAACATAGTCTTCTCATTAGGATACACTATATTGATGCGTTGGT
901 CACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATG-GTTTGT
* * * *
2046149 TTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCTAAATTCATGCCTCAAATGAGACA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * *
2046214 AACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
* * * * * * * * * *
2046279 TTAGGATGAATAACATTGATTATCTTCTTTTGTGCGAAAATCTTTT-GTTGCCCTGTTTTACTTA
131 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* * *
2046343 AAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCATTCTTTTCAA
196 AAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAA
* * * * *
2046408 GATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTTGGTGT-TGCG
260 GATTGGGAACCCAAAACACATACCCTTCATTAGGATAC-ATGACATTAATGCTTTGGTGTCT-C-
* * *
2046471 AGAAAAGCTTTTCTTT-CATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
322 AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * *
2046535 GAATA-CCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAG
387 GAATAGTC-ACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
2046599 GATACA-TAATATTGACGCTTTAGTTTTGTGAA-AAAGGCTTTCTTCCCACCAATTTTTGTAAAG
451 GATACACT-ATATTGATGCGTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAG
* * * ** *
2046662 TCTAAGTTCGTGCTTCAAATGAGACGAACATGGATTCGAGTAATGATCCGCATTCATTTTGTGAT
514 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGAT
* * * * * * *
2046727 TGGGCACAATAAACACATTCTCCTTAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAA
579 TAGGCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAA
* * *
2046792 ATCTTTTCTTTGCCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATA
644 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATT
* * * *
2046857 CTTGTAACAGCCTCTATTCCTTTCAAGATTGGGAAGCCAAAACACATTGCCATCGTTAGGATACA
709 CTTGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACA
*
2046922 TGACATTGAA-GCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
774 TGACATT-AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAG
* *
2046986 TTTGTCTCTTAAATAAGACAAAAAAGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
838 TTTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCA
* *
2047051 CCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTGCT
903 CCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTTTG-T
* * * *
2047099 TTCTCAACAAAGGCTTTCTTCCCACCAATTATTGTAAAGTCTAAGTTCGTGACTCAAATGAGAAA
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
2047164 AACCTGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTA
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
* * * ** *
2047229 TTAGGATAAATCATATTGATGATTTTCTTTTGCATGATAATCTTTTCTTTGTACTATTATCCTTA
131 TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
* ** *
2047294 AAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCCATTCTTTTCA
196 AAATCAAAGTTCATCCCTT-AATAAGACAAGCATCGATTCT-TGTAACAGTCTCCATTCTTTTCA
2047359 AGGA-TGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCATC
259 A-GATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTC-TC
* *
2047423 AAAAAAGCTTTTCTTTCCATCGATTTTGACAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
322 AAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * *
2047488 GAATAGTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGG
387 GAATAGTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGG
* *
2047553 ATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTTTTGTAAAGTCT
452 ATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCT
* * * * *
2047618 AAATTCATGCCTCAAATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAG
517 AAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAG
* * * * *
2047683 GCACTATAAACACATTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATC
582 GCACTATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATC
* * * * * * *
2047748 TTTTCGTTGCCCTGTTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTC
647 TTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTT
* * * *
2047813 GTAACAGTCTCCATTCTTTTCAAGATTGGGAA-CCAAAA-ACACGTGCCCTTCTTTAGAAT-CTG
712 GTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA-TTG-CCTTCGTTAGGATAC-A
* * * *** *
2047875 TGACATTAATGCTTTGGTGTTGCGAGAAAAGATTTTCTTTCCATTGTTTTTGATGGAATCAAAGT
774 TGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
*
2047940 TTGTCTCTTAAATAAGACAAACATGAATAC-C-TACGCTAATCCCCATTCTTTTCAATATTAGGC
839 TTGTCTCTTAAATAAGACAAACATGAATACTCATA--CTAATCCCCATTCTTTTCAAGATTAGGC
* * ** ***
2048003 ACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACACTTTAGT
902 ACCATAAACATAGTCTTCTCATTAGGATACACGATATTGATGGTTT-GT
* ** * * *
2048052 TTTGTGACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTCCGTGCTTCAAATGAGACG
1 TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
** * * *
2048117 AACATGGATTCTAGTAATGATCCGCATTCATTTTGTGAT-TGGGCACAATAAACACATTCTCCTC
66 AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGG-ACTATAAACACATTCTCCTC
* *
2048181 AGTAGGATAAATGATATTGACGATTTTC-TTT---TG----------C---G---T-TTTT-CTT
130 ATTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTT
*
2048224 AAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGTCTCCATTCTTTTCA
195 AAAATCAAAGTTCATCCCTTA-ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCA
* *** * * * *
2048289 AGATTGGGAAGCCAAAACACATTGTCGTCATTATGATACATGACATTGAA-GCTTTGGTATCACA
259 AGATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATT-AATGCTTTGGTGTCTCA
* * * * *
2048353 AGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAA
323 A-AAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAT
* * * * *
2048418 GAATACTCATACTAA-CCACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAA
387 GAATAGTCACACTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAG
* * * * *
2048482 GATACACGATATTGATGCTTTGGTTTTGCAACAAAGGCTTTCTTCCCAGCAATTTTAGTAAAGTC
451 GATACACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTC
** ** * **
2048547 TAAGTTTATGCCTGTAATGAAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTA
516 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA
* * *
2048612 AGCACTATAAACACATTC-CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAA
581 GGCACTATAAACACATTCTC-CTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAA
*
2048676 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTC
645 TCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTC
* * * *
2048741 TTGCAAC-GATCTCCATTCTTTTCAAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACA
710 TTGTAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACA
* * * * * *
2048805 TGGCATTGATGCTTTGTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGT
774 TGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT
* * *
2048870 TTGCCTCTTAAATAAGACAAACTTGAATACTCATACTAATCCCCATTCTTTTCAGGATTAGGCAC
839 TTGTCTCTTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCAC
* **
2048935 CATAAACGA-AGTCTTCTCATTAGGATACATGATATTGATATTTTGGT
904 CATAAAC-ATAGTCTTCTCATTAGGATACACGATATTGATGGTTT-GT
* * * *
2048982 TTCGCAACAAAGGCATTT-TTCCCACAAATTTTTGTGAAGTCTAAGTTCGTGCCTCAAACGCGAC
1 TTCGCAACAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGAC
* * **
2049046 AAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATCAGCAACTATAAACACATTCTCGC-
65 AAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTC-CT
*
2049110 CATTAGGATACATGATATTGA
129 CATTAGGATAAATGATATTGA
2049131 AGCTTTGTTT
Statistics
Matches: 6637, Mismatches: 956, Indels: 315
0.84 0.12 0.04
Matches are distributed among these distances:
929 9 0.00
930 719 0.11
931 57 0.01
932 8 0.00
933 1 0.00
936 1 0.00
939 1 0.00
946 5 0.00
947 126 0.02
948 180 0.03
949 417 0.06
950 472 0.07
951 1138 0.17
952 1540 0.23
953 1886 0.28
954 73 0.01
955 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (949 bp):
TTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACA
AACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATCAGGGACTATAAACACATTCTCCTCA
TTAGGATAAATGATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTATTTTCCTTA
AAATCAAAGTTCATCCCTTAATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAG
ATTGGGAACCCAAAACACATACCCTTCATTAGGATACATGACATTAATGCTTTGGTGTCTCAAAA
AAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAAT
AGTCACACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTAGGATAC
ACTATATTGATGCGTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
TCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCAC
TATAAACACATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTT
CTTTGCCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCGATTCTTGTAA
CAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTGCCTTCGTTAGGATACATGACATT
AATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTC
TTAAATAAGACAAACATGAATACTCATACTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC
ATAGTCTTCTCATTAGGATACACGATATTGATGGTTTGT
Found at i:2048972 original size:159 final size:159
Alignment explanation
Indices: 2048277--2048973 Score: 452
Period size: 159 Copynumber: 4.4 Consensus size: 159
2048267 GTAACAGTCT
* * * *
2048277 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACA-T-TGTCGTCATTATGATACATGACATTGAA
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGTCT-TC-TCATTAAGATACATGATATTGAT
* * * * *
2048339 GCTTTGGTATCACAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATT-TGTCTCTT
63 GCTTT-GTTTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2048403 AAATAAGACAAACAAGAATACTCATACTAA-CC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * *
2048435 ACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGC
1 -CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATGC
** * * * * * * *
2048500 TTTGGTTTTGCAACAAAGGC-TTTCTTCCCAGCAATTTTAG-TA-AAGTCTAAGTTTATGCCT-G
65 TTT-GTTTCACAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAGAA-TCAAAG-TTATGCCTCT
* * * * *
2048561 T-AATGAA-ACAAACATGGATTCT-AGTAATGATCT
126 TAAAT-AAGACAAACATGAATACTCA-TACTAATCC
* * ** * * * * * * *
2048594 TCATTAATTTT-GTGATTAAGCACTATAAACACATTCCTCTCATTAAGATAAATAATATTGATGA
1 CCATT-CTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATG-
* * ** * * *** *
2048658 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT-CC-CTT
64 CTTTGTTTCACAAGAAAAGCTTTTCTTT-CCACTATTTTTGATAGAATCAAAGTT-ATGCCTCTT
* * * *
2048720 AAATAAGACAAGCATCG-ATTCTTGCA-AC-GATCT
127 AAATAAGACAAACAT-GAATAC-T-CATACTAATCC
* * * * **
2048753 CCATTCTTTTCAAGATTGGGAAGCGA-AAACACATTCCCTTC-C-TTAGGATACATGGCATTGAT
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGT--CTTCTCATTAAGATACATGATATTGAT
*
2048815 GCTTTGTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTT-TGCCTCTT
63 GCTTTGTT-TCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2048879 AAATAAGACAAACTTGAATACTCATACTAATCC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * *
2048912 CCATTCTTTTCAGGATTAGGCACCATAAACGA-AGTCTTCTCATTAGGATACATGATATTGAT
1 CCATTCTTTTCAAGATTAGGAACCATAAAC-ACAGTCTTCTCATTAAGATACATGATATTGAT
2048974 ATTTTGGTTT
Statistics
Matches: 408, Mismatches: 91, Indels: 78
0.71 0.16 0.14
Matches are distributed among these distances:
157 10 0.02
158 125 0.31
159 250 0.61
160 18 0.04
161 4 0.01
162 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAAGATACATGATATTGATGCT
TTGTTTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCC
Found at i:2052866 original size:476 final size:474
Alignment explanation
Indices: 2051967--2053200 Score: 1619
Period size: 476 Copynumber: 2.6 Consensus size: 474
2051957 TGAGCTTTCA
* *
2051967 ATATTGATGATTTTCTTTTGCGA-GAAAATCTTTTCTTTGTCCTATTTTCCTTAAAATTAAAGTT
1 ATATTGATGATTTTCTTTTGC-ATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * *
2052031 CAT-CTCTTAAAAAAGATAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCATGATTGGGAAA
65 CATCCT-TTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAA
2052095 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
129 CAAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTT
* *
2052160 CTTTCCA-TCGTTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGAC-AACTTGAATACTCACA
194 CTTTCCACT-ATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATA
* * * *
2052223 CTAATCCCCATTCTTTTTCAAGATTAGTCACCATAAACATAGTCTTCTCATTAGGATACACGATG
258 CTAATCCCC-TTCTTTTT-AGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATA
* *
2052288 TTGATGCTTTGGTTTCGCAACAAAGGTTCTACTTCCACCAAATTTTGTAAAGTCTAAGTTCATGC
321 TTGATGCTTTGGTTTCACAACAAAGGTTCTA-TTCCACCAAATTTTGTAAAGTCTAACTTCATGC
* *
2052353 GTCAAATGAGACAAACTTGGATTCTAGTAATGATCTTCATTAATTTTGCAATTATG-CACAATAA
385 CTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTA-GACACAATAA
2052417 ACACATTCTCCTCACTAGGATAAATG
449 ACACATTCTCCTCACTAGGATAAATG
* * * *
2052443 ATATTGGTGATTTTCGTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTAATATCAAAGTTC
1 ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
* * * * *
2052508 ATCCTTTAAAGAAGACAAGCATTGA-TCTTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGC
66 ATCCTTTAAAAAAGACAAGCATCGATTC-TCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * * *
2052572 CAAAACACATACCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
* * ** * * * * *
2052637 TTTCCACTATTTTTGATAAAATCAAAGTTCATCTCTTAAGTAAGACAAACCTGAATAATCATACA
195 TTTCCACTATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACT
* *
2052702 AATCCTCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTTTTCTCATTAGGATACATGATATTG
260 AATCC-CCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTG
* ** * **
2052767 ATGTTTTGGTTTCACATGAAAGGCATT-T-TTCCCAGCAGTTTTTGTAAAGTCTAACTTCATGCC
324 ATGCTTTGGTTTCACAACAAAGG--TTCTATT-CCACCAAATTTTGTAAAGTCTAACTTCATGCC
* ** ** * *
2052830 TCAAAT-ACGACAAACATGGATTCTATTAATGATCTTCATTCTTTTTGTGATTAGACGCTATAAA
386 TCAAATGA-GACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGACACAATAAA
* * * *
2052894 CATATTCTCCTCAGTATGATGAATG
450 CACATTCTCCTCACTAGGATAAATG
* * *
2052919 ATATCGATGTTTTTCTTTTGCATGGATAA-CTTTTCTTTGTCATATTTTCCTTAAAATCAAAGTT
1 ATATTGATGATTTTCTTTTGCATGGA-AATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTT
* * * *
2052983 CATCCCTTAAAAAAGACAGGCATCGATTCTCGTAAAAATCTCCATTCTTTTCAAGATTGGGAAAT
65 CATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAAC
* * *
2053048 AAAAACACATA-CCTTGATTAGGATATATGACATTGATGCTTTAGTGTCGCGAGTAAAGCTTTTC
130 AAAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTC
*
2053112 TTTCCACCATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTC-TCAC
195 TTTCCACTATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCAT-AC
* *
2053176 TAATCCGCATTCTTTTCAGGATTAG
259 TAATCC-CCTTCTTTTTAGGATTAG
2053201 TGATGAAAAC
Statistics
Matches: 653, Mismatches: 91, Indels: 29
0.84 0.12 0.04
Matches are distributed among these distances:
474 1 0.00
475 128 0.20
476 485 0.74
477 35 0.05
478 4 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGTCCTATTTTCCTTAAAATCAAAGTTC
ATCCTTTAAAAAAGACAAGCATCGATTCTCGTAAAAGTCTCCATTCTTTTCAAGATTGGGAAACA
AAAACACATACCCTTCATTAGGATATATGACATTGATGCTTTGGTGTCGCGAGAAAAGCTTTTCT
TTCCACTATTTTTAATAGAATCAAAGTTTGTCTCATAAATAAGACAAACTTGAATACTCATACTA
ATCCCCTTCTTTTTAGGATTAGGCACCATAAACAAAGTCTTCTCATTAGGATACACGATATTGAT
GCTTTGGTTTCACAACAAAGGTTCTATTCCACCAAATTTTGTAAAGTCTAACTTCATGCCTCAAA
TGAGACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGCAATTAGACACAATAAACACATT
CTCCTCACTAGGATAAATG
Found at i:2054846 original size:12 final size:11
Alignment explanation
Indices: 2054824--2054899 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
2054814 AGAGAAAGAA
*
2054824 GAGAGAGGAGG
1 GAGATAGGAGG
2054835 GATGATAGGAGG
1 GA-GATAGGAGG
*
2054847 AGAGACAGGA--
1 -GAGATAGGAGG
*
2054857 GAGATAGTA--
1 GAGATAGGAGG
2054866 GAGATAGGAGG
1 GAGATAGGAGG
2054877 GATGATAGGAGG
1 GA-GATAGGAGG
*
2054889 AGAGACAGGAG
1 -GAGATAGGAG
2054900 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2054856 original size:24 final size:24
Alignment explanation
Indices: 2054823--2054908 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2054813 AAGAGAAAGA
*
2054823 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2054847 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2054865 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2054889 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2054909 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2054875 original size:42 final size:42
Alignment explanation
Indices: 2054814--2054932 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
2054804 TAGCCCTCAA
* *
2054814 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
2054856 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2054898 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2054933 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2061369 original size:476 final size:474
Alignment explanation
Indices: 2060455--2067192 Score: 8196
Period size: 476 Copynumber: 14.2 Consensus size: 474
2060445 TCTTCTCACC
* * * *
2060455 AATGAGA-AAGACATGGATTCTAGTAATGACCTTTATTCTTTTTGTGATAACGG-ACTGTAAACA
1 AATGAGACAA-ACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTA-GGCACTATAAACA
* * * **
2060518 CATTCTCCTTATTGGGATAAA-AGCA-ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTTT
64 CATTCTCCTCATTAGGATAAATA--ATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGC
* * * * * * * * *
2060581 GCTATTATCCTTCAAATCAAAGTTCATTCGTTGAATAAGACAAGCAAT-GATTTTCATAACATTC
127 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-ATCGATTCTCGTAACAGTC
* * * * *
2060645 TCCGTTCTTTTCAAGGTTGGGAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGC
191 TCCATTCTTTTCAAGATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGC
* * * *
2060710 TTTGGTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGACAGAATTAAAGTTTGTCTCTTA
256 TTTGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * *
2060773 AATAAGACAAACATGAATA-CTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACAT
319 AATAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACAT
* * * **
2060837 AGTCTTCCCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCATGA
382 AGTCTTCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCA
* *
2060902 ATTTTTGTAAAGTCTAAATTCATGCCTCA
446 ATTTTTGTAAAGTCTAAGTTCGTGCCTCA
* *
2060931 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * * * *
2060996 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
2061061 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
2061126 TCTTTTCAAGATTGGGAA-CCAAAAGCACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAA-CACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTT
* *** *
2061189 GGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
2061254 GACAAACATGAATACCTACGCTAATCCCCATTCGTTTCAAAATTAGGCACCATACACAGAGTCTT
324 GACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * * *
2061319 CTCATTAGGATACATAATATTGACGCTTTAGTTTTGTGAA-AAAGGCTTTCTTCCCACCAATTTT
388 CTCATTAGGATACAT-ATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAATTTT
*
2061383 TGTAAAGTCTAAGTTCGTGCTTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
2061407 AATGAGACGAACATGGATTCTAGTAATGATCTGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * *
2061472 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTA
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * * *
2061537 TTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
2061602 TCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
* * *
2061665 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
2061730 GACAAAAAAGAATACTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCG
324 GACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
2061794 TCTCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTAT
387 TCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* *
2061859 TGTAAAGTCTAAGTACGTGACTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * *
2061883 AATGAGAAAAAACATGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACAC
1 AATGAG-ACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACAC
* * * **
2061948 ATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACT
65 ATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * * *
2062013 ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCC
* * * *
2062078 ATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTT
194 ATTCTTTTCAA-GATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTT
*
2062142 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAA
258 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
2062205 TAAGACAAACATGAATA-CTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAG
321 TAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
* * *
2062269 TCTTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAAT
384 TCTTCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAAT
* *
2062334 TTTTGTAAAGTCTAAATTCATGCCTCA
448 TTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
2062361 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * * * *
2062426 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGCGAAAATCTTTT-TGTTGCCCT
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCT
* * * * * *
2062490 GTTTTACTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
2062555 TTCTTTTCAAGATTGGGAA-CCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTT
195 TTCTTTTCAAGATTGGGAAGCC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTT
* * *** *
2062618 TGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATA
258 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * *
2062682 AGACAAACATGAATACCTACGCTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTCT
323 AGACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * **
2062747 TCCCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCATGAATTTT
387 TCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* *
2062812 TGTAAAGTCTAAATTCATGCCTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* *
2062836 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * * * *
2062901 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
2062966 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
2063031 TCTTTTCAAGATTGGGAA-CCAAAAGCACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAA-CACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTT
* *** *
2063094 GGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
2063159 GACAAACATGAATACCTACGCTAATCCCCATTCGTTTCAAAATTAGGCACCATACACAAAGTCTT
324 GACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * * *
2063224 CTCATTAGGATACATAATATTGACGCTTTAGTTTTGTGAA-AAAGGCTTTCTTCCCACCAATTTT
388 CTCATTAGGATACAT-ATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAATTTT
*
2063288 TGTAAAGTCTAAGTTCGTGCTTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
2063312 AATGAGACGAACATGGATTCTAGTAATGATCTGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * *
2063377 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTA
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * * *
2063442 TTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGCCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
2063507 TCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
* * *
2063570 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
2063635 GACAAAAAAGAATACTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCG
324 GACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
2063699 TCTCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTAT
387 TCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
* *
2063764 TGTAAAGTCTAAGTACGTGACTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
2063788 AATGAGAAAAAACATGGATTCTAGTAATAATCTTCATTCTTTTTTTGATAAGGGACTATAAACAC
1 AATGAG-ACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACAC
* * * **
2063853 ATTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACT
65 ATTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* * * * *
2063918 ATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAATAACATTCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCC
* * * *
2063983 ATTCTTTTCAAGGA-TGGTAACCCAAAACACATACCCCTCATTAGGATACATGACATTAATGCTT
194 ATTCTTTTCAA-GATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTT
*
2064047 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTAAA
258 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * * *
2064110 TAAGACAAACATGAATA-GTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAG
321 TAAGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAG
* * *
2064174 TCTTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAAT
384 TCTTCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAAT
* *
2064239 TTTTGTAAAGTCTAAATTCATGCCTCA
448 TTTTGTAAAGTCTAAGTTCGTGCCTCA
* * *
2064266 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATCAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * * * *
2064331 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTCTGTGCGAAAATCTTTT-TGTTGCCCT
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCT-TTGCCCT
* * * * * *
2064395 GTTTTACTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTTGTAACAGTCTCCA
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
* * *
2064460 TTCTTTTCAAGATTGGGAA-CCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATTAATGCTT
195 TTCTTTTCAAGATTGGGAAGCC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTT
* * *** *
2064523 TGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATA
258 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * *
2064587 AGACAAACATGAATACCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCT
323 AGACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * *
2064652 TCTCATTAGGATACATAATATTGACGCTTTAGTTTTGTGAA-AAAGGCTTTCTTCCCACCAATTT
387 TCTCATTAGGATACAT-ATATTGATGCTTTGGTTTCG-CAACAAAGGCTTTCTTCCCACCAATTT
*
2064716 TTGTAAAGTCTAAGTTCGTGCTTCA
450 TTGTAAAGTCTAAGTTCGTGCCTCA
* ** * * *
2064741 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * *
2064806 TTCTCCTTAGTAGGATAAATGATATTGACGATTTTCTTTTGCGTGGAAATCTTTTCTTTGCCCTA
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * * * * *
2064871 TTTTTCTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATACTTGTAACAGCCTCTAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* * *
2064936 TCCTTTCAAGATTGGGAAGCCAAAACACATTG-CCATCGTTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
*
2064999 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAGGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * * *
2065064 GACAAAAAAGAATACTCATA-CTAATCCCCATTCTTTTCAAGATTAGGCGCCATAAACATAGTCG
324 GACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
2065128 TCTCATTAGGATACACGATATAGATGGTTTGCTTTCGCAACAAAGGCTTTCTTCCCACCAATTAT
387 TCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTT
*
2065193 TGTAAAGTCTAAGTTCGTGACTCA
451 TGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
2065217 AATGAGAAAAACCTGGATTCTAGTAATAATCTTCATTCTTTTTGTGATAAGGGACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * **
2065282 TTCTCCTTATTAGGATAAATCATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTACTA
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * * ** *
2065347 TTATCCTTAAAATCAAAGTTCATCCCTTGAATAAGACAAGCAACGATTCTCAAAAACATTCTCCA
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC-GTAACAGTCTCCA
* * * *
2065412 TTCTTTTCAAGGTTGGGAACCCAAAACACATACCCTTCATTAGGATACATAACATTAATGCTTTG
195 TTCTTTTCAAGATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTTG
* * *
2065477 GTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAATA
260 GTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* * * * *
2065540 AGACAAACATGAATA-GTCACACTAATCCCCATTCTTTTTAGGATTTGGAACCATAAACATAGTC
323 AGACAAACATGAATACCT-AC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * *
2065604 TTCTCATTAGGATACACTATATTGATGCGTTGGTTTCGCAACAAAAGCTTTCTTCCCACGAATTT
386 TTCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTT
* *
2065669 TTGTAAAGTCTAAATTCATGCCTCA
450 TTGTAAAGTCTAAGTTCGTGCCTCA
* *
2065694 AATGAGACAAACATGGATTCAACTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * * * * * *
2065759 TTCTCCTCATTAGGATGAATAACATTGATTATCTTCTTTTGTGTGAAAATCTTTTCGTTGCCCTG
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
2065824 TTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCGTCGATTCTCGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* *
2065889 TCTTTTCAAGATTGGGAA-CCAAAAACACGTGCCCTTCTTTAGGAT-CTATGACATTAATGCTTT
196 TCTTTTCAAGATTGGGAAGCC-AAAACACATGCCCTTCATTAGGATAC-ATGACATTAATGCTTT
* *** *
2065952 GGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
2066017 GACAAACATGAATACCTACGCTAATCCCCATTCTTTTCAAAATTAGGCACCATACACAGAGTCTT
324 GACAAACATGAATACCTAC-CTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT
* * * **
2066082 CTCATTAGGATACATAATATTGACGCTTTAGTTTTGTGACAAAGGCTTTCTTCCCACCAATTTTT
388 CTCATTAGGATACAT-ATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTT
*
2066147 GTAAAGTCTAAGTTCGTGCTTCA
452 GTAAAGTCTAAGTTCGTGCCTCA
* ** * * *
2066170 AATGAGACGAACATGGATTCTAGTAATGATCCGCATTCATTTTGTGATTGGGCACAATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* * *
2066235 TTCTCCTCAGTAGGATAAATGATATTGACGATTTTC-TTT---TG----------C---G---T-
66 TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
* * *
2066279 TTTT-CTTAAAATCAAAGTTCATCCCTTAGATAAGACAAGCATCTATTCTTGTAACAGTCTCCAT
131 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
* *
2066343 TCTTTTCAAGATTGGGAAGCCAAAACACATTG-TCGTCATTAGGATACATGACATTGAA-GCTTT
196 TCTTTTCAAGATTGGGAAGCCAAAACACA-TGCCCTTCATTAGGATACATGACATT-AATGCTTT
* * * *
2066406 GGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATTTGTCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* * *
2066471 GACAAACAAGAATACTCATA-CTAA-CCACTATTCTTTTCAAGATTAGGAACCATAAACATAGTC
324 GACAAACATGAATAC-C-TACCTAATCC-CCATTCTTTTCAAGATTAGGCACCATAAACATAGTC
* * *
2066534 TTCTCATTAAGATACACGATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCAGCAATTT
386 TTCTCATTAGGATACA-TATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTT
* ** **
2066599 TAGTAAAGTCTAAGTTTATGCCTGT
450 TTGTAAAGTCTAAGTTCGTGCCTCA
* ** *
2066624 AATGAAACAAACATGGATTCTAGTAATGATCTTCATTAATTTTGTGATTAAGCACTATAAACACA
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
* *
2066689 TTC-CTCTCATTAAGATAAATAATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
66 TTCTC-CTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCT
* *
2066753 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTTGCAAC-GATCTCC
130 ATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAG-TCTCC
* * * * *
2066817 ATTCTTTTCAAGATTGGGAAGCGAAAACACATTCCCTTCCTTAGGATACATGGCATTGATGCTTT
194 ATTCTTTTCAAGATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTT
* ** * * *
2066882 GTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTTTGCCTCTTAAATAA
259 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAA
* **
2066947 GACAAACTTGAATACTCATA-CTAATCCCCATTCTTTTCCGGATTAGGCACCATAAACGA-AGTC
324 GACAAACATGAATAC-C-TACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAAC-ATAGTC
** * *
2067010 TTCTCATTAGGATACATGATATTGATATTTTGGTTTCGCAACAAAGG-TATTTTTCCCACAAATT
386 TTCTCATTAGGATACAT-ATATTGATGCTTTGGTTTCGCAACAAAGGCT-TTCTTCCCACCAATT
*
2067074 TTTGTGAAGTCTAAGTTCGTGCCTCA
449 TTTGTAAAGTCTAAGTTCGTGCCTCA
* * * * *
2067100 AACGCGACAAACATGGATTCTACTAATGATCTTCATTCATTTTGTGATCA-GCAACTATAAACAC
1 AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGC-ACTATAAACAC
* *
2067164 ATTCTCGC-CATTAGGATACATGATATTGA
65 ATTCTC-CTCATTAGGATAAATAATATTGA
2067193 AGCTTTGTTT
Statistics
Matches: 5409, Mismatches: 720, Indels: 266
0.85 0.11 0.04
Matches are distributed among these distances:
453 3 0.00
454 369 0.07
455 15 0.00
456 3 0.00
458 2 0.00
459 1 0.00
462 1 0.00
468 1 0.00
471 1 0.00
472 2 0.00
474 11 0.00
475 901 0.17
476 2542 0.47
477 1037 0.19
478 509 0.09
479 11 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.35
Consensus pattern (474 bp):
AATGAGACAAACATGGATTCTAGTAATGATCTTCATTCTTTTTGTGATTAGGCACTATAAACACA
TTCTCCTCATTAGGATAAATAATATTGATGATTTTCTTTTGCGTGAAAATCTTTTCTTTGCCCTA
TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
TCTTTTCAAGATTGGGAAGCCAAAACACATGCCCTTCATTAGGATACATGACATTAATGCTTTGG
TGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
CAAACATGAATACCTACCTAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
ATTAGGATACATATATTGATGCTTTGGTTTCGCAACAAAGGCTTTCTTCCCACCAATTTTTGTAA
AGTCTAAGTTCGTGCCTCA
Found at i:2061787 original size:159 final size:158
Alignment explanation
Indices: 2060649--2066262 Score: 1567
Period size: 159 Copynumber: 35.4 Consensus size: 158
2060639 ACATTCTCCG
* * *
2060649 TTCTTTTCAAGGTTGGGAACCCA-AAACACATACCCCTCATTAGGATACATGACATT-AATGCTT
1 TTCTTTTCAAGATTAGGAA-CCATAAACACAT-TCCCTCATTAGGATACATGACATTGAA-GCTT
* * * * * *
2060712 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGACAGAATTAAAGTTTGTCTCTTAAA
63 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAA
* *
2060775 TAAGACAAACATGAATACTCACACTAATCCCCA
126 TAAGACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * *
2060808 TTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCC-CATTAGGATACACT-ATATTGATGCGT
1 TTCTTTTCAAGATTAGGAACCATAAACACA-T-TCCCTCATTAGGATACA-TGACATTGAAGCTT
* * ** * * *
2060871 TGGT-TTCGCAACAAAAGC-TTTCTTCCCATGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTCA
63 TGGTGTT-GCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAAAATC-AAAGTTCGT-CTCTTA
* * * * * **
2060931 AATGAGACAAACATGGATTC-AACTAATGATCTTCA
124 AATAAGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * *
2060966 TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTATCT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGACATTGA--AGCT
*** * * * ** * * *
2061030 TCT--T-TTGTGTGAAAATCTTTTCGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCCCTTA
62 T-TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTCTTA
* * * * * *
2061090 AAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCTCCA
124 AATAAGACAAACAT-GAATTCTCAT-ACTAATCCCCA
* * * * *
2061125 TTCTTTTCAAGATTGGGAACCA-AAAGCACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATGCT
1 TTCTTTTCAAGATTAGGAACCATAAA-CACATTCCC-TCATTAGGATAC-ATGACATTGAA-GCT
* *** ** *
2061187 TTGGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAAT
62 TTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAAT
*
2061252 AAGACAAACATGAATAC-C-TACGCTAATCCCCA
127 AAGACAAACATGAATTCTCATA--CTAATCCCCA
* * * * * * * * * * *
2061284 TTCGTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACGCTTTA
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * *
2061349 GTTTTGTGAA-AAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAAAT
65 GTGTTG-CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAAT
* * * * * **
2061410 GAGACGAACATGGATTCT-AGTAATGATCTGCA
127 AAGACAAACATGAATTCTCA-TACTAATCCCCA
** * * * * * * * *
2061442 TTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTT
1 TTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTT
** * ** * * * ** * * *
2061506 TCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATA
64 GGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* ** ** *
2061570 AGACAAGCATCTATTCTTGTA--ACAGCCTCCA
128 AGACAAACATGAATTCTCATACTA-ATCC-CCA
* * * *
2061601 TTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAGCTTT
1 TTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGACATTGAAGCTTT
* * *
2061665 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
64 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAA
* * *
2061730 GACAAAAAAGAATACTCATACTAATCCCCA
129 GACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * * *
2061760 TTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTG
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * * * ** * *
2061825 CT-TTCGCAACAAAGGC-TTTCTTCCCACCAATTATTG-TAAAGTCTAAGTACGTGACTCAAATG
65 GTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* * * **
2061887 AGAAAAAACATGGATTCT-AGTAATAATCTTCA
128 AG-ACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * * * * * * * *
2061919 TTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * ** * * *** * * *
2061984 CTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAG
65 GTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAG
* * * *
2062049 ACAAGCAACG-ATTCTCAATAAC-ATTCTCCA
130 ACAAAC-ATGAATTCTC-AT-ACTAATCCCCA
*
2062079 TTCTTTTCAAGGA-T-GGTAACCCA-AAACACATACCCCTCATTAGGATACATGACATT-AATGC
1 TTCTTTTCAA-GATTAGG-AA-CCATAAACACAT-TCCCTCATTAGGATACATGACATTGAA-GC
* * *
2062140 TTTGGTGTCAT-CAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTA
61 TTTGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
* *
2062203 AATAAGACAAACATGAATACTCACACTAATCCCCA
124 AATAAGACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * * *
2062238 TTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGCGTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGACATTGAAGCTTT
* * * * * *
2062302 GGT-TTCGCAACAAAAGC-TTTCTTCCCACGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTCAA
64 GGTGTT-GCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTTAA
* * * * * **
2062362 ATGAGACAAACATGGATTC-AACTAATGATCTTCA
125 ATAAGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * * *
2062396 TTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTATCT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGACATTGA--AGCT
** * * * * *
2062460 TCTTCTG-TGC--GAAAATCTTTT-TGTTGC-CC-TGTTTT-ACTTAAAATTAAAGTTCATCCCT
62 T-TGGTGTTGCAAGAAAAGCTTTTCT-TTCCACCAT-TTTTGA--TAAAATCAAAGTTCGTCTCT
* * * ** * *
2062518 TAAAAAAGACAAGCGTCG-ATTCTTGTAAC-AGTCTCCA
122 TAAATAAGACAAACAT-GAATTCTCAT-ACTAATCCCCA
* * * * * *
2062555 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATGCTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGACATTGAA-GCTT
* * *** ** *
2062618 TGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATA
63 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
*
2062682 AGACAAACATGAATAC-C-TACGCTAATCCCCA
128 AGACAAACATGAATTCTCATA--CTAATCCCCA
* * * * * * * *
2062713 TTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCC-CATTAGGATACACT-ATATTGATGCGT
1 TTCTTTTCAAGATTAGGAACCATAAACACA-T-TCCCTCATTAGGATACA-TGACATTGAAGCTT
* * ** * * *
2062776 TGGT-TTCGCAACAAAAGC-TTTCTTCCCATGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTCA
63 TGGTGTT-GCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATAAAATC-AAAGTTCGT-CTCTTA
* * * * * **
2062836 AATGAGACAAACATGGATTC-AACTAATGATCTTCA
124 AATAAGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * *
2062871 TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTATCT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGACATTGA--AGCT
*** * * * ** * * *
2062935 TCT--T-TTGTGTGAAAATCTTTTCGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCCCTTA
62 T-TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTCTTA
* * * * * *
2062995 AAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCTCCA
124 AATAAGACAAACAT-GAATTCTCAT-ACTAATCCCCA
* * * * *
2063030 TTCTTTTCAAGATTGGGAACCA-AAAGCACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATGCT
1 TTCTTTTCAAGATTAGGAACCATAAA-CACATTCCC-TCATTAGGATAC-ATGACATTGAA-GCT
* *** ** *
2063092 TTGGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAAT
62 TTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAAT
*
2063157 AAGACAAACATGAATAC-C-TACGCTAATCCCCA
127 AAGACAAACATGAATTCTCATA--CTAATCCCCA
* * * * * * * * * * *
2063189 TTCGTTTCAAAATTAGGCACCATACACAAAGTCTTCTCATTAGGATACATAATATTGACGCTTTA
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * *
2063254 GTTTTGTGAA-AAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAAAT
65 GTGTTG-CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAAT
* * * * * **
2063315 GAGACGAACATGGATTCT-AGTAATGATCTGCA
127 AAGACAAACATGAATTCTCA-TACTAATCCCCA
** * * * * * * * *
2063347 TTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGACGATTT
1 TTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTT
** * ** * * * ** * * *
2063411 TCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATA
64 GGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* ** ** *
2063475 AGACAAGCATCTATTCTTGTA--ACAGCCTCCA
128 AGACAAACATGAATTCTCATACTA-ATCC-CCA
* * * *
2063506 TTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAGCTTT
1 TTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGACATTGAAGCTTT
* * *
2063570 GGTGTCGCAAGAAAAGCTTTTCTTTACACCATTTTTGATAAAATCAAAGTTTGTCTCTTAAATAA
64 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAA
* * *
2063635 GACAAAAAAGAATACTCATACTAATCCCCA
129 GACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * * *
2063665 TTCTTTTCAAGATTAGGCACCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTG
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * * * ** * *
2063730 CT-TTCGCAACAAAGGC-TTTCTTCCCACCAATTATTG-TAAAGTCTAAGTACGTGACTCAAATG
65 GTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* * * **
2063792 AGAAAAAACATGGATTCT-AGTAATAATCTTCA
128 AG-ACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * * * * * * * *
2063824 TTCTTTTTTTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * ** * * *** * * *
2063889 CTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAG
65 GTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAG
* * * *
2063954 ACAAGCAACG-ATTCTCAATAAC-ATTCTCCA
130 ACAAAC-ATGAATTCTC-AT-ACTAATCCCCA
*
2063984 TTCTTTTCAAGGA-T-GGTAACCCA-AAACACATACCCCTCATTAGGATACATGACATT-AATGC
1 TTCTTTTCAA-GATTAGG-AA-CCATAAACACAT-TCCCTCATTAGGATACATGACATTGAA-GC
* * *
2064045 TTTGGTGTCAT-CAA-AAAAGCTTTTCTTTCCACCATTTTTGACAGAATCAAAGTTTGTCTCTTA
61 TTTGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTA
** *
2064108 AATAAGACAAACATGAATAGTCACACTAATCCCCA
124 AATAAGACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * * *
2064143 TTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGCGTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGACATTGAAGCTTT
* * * * * *
2064207 GGT-TTCGCAACAAAAGC-TTTCTTCCCACGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTCAA
64 GGTGTT-GCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTTAA
* * * * * **
2064267 ATGAGACAAACATGGATTC-AACTAATGATCTTCA
125 ATAAGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * * *
2064301 TTCTTTTTGTGATCAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTATCT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGACATTGA--AGCT
** * * * * *
2064365 TCTTCTG-TGC--GAAAATCTTTT-TGTTGC-CC-TGTTTT-ACTTAAAATTAAAGTTCATCCCT
62 T-TGGTGTTGCAAGAAAAGCTTTTCT-TTCCACCAT-TTTTGA--TAAAATCAAAGTTCGTCTCT
* * * ** * *
2064423 TAAAAAAGACAAGCGTCG-ATTCTTGTAAC-AGTCTCCA
122 TAAATAAGACAAACAT-GAATTCTCAT-ACTAATCCCCA
* * * * * *
2064460 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTGTGACATT-AATGCTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGACATTGAA-GCTT
* * *** ** *
2064523 TGGTGTTGCGAGAAAAGCTTTTCTTT-AATGGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATA
63 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
*
2064587 AGACAAACATGAATAC-C-TACGCTAATCCCCA
128 AGACAAACATGAATTCTCATA--CTAATCCCCA
* * * * * * * * * *
2064618 TTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACGCTTTA
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * *
2064683 GTTTTGTGAA-AAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAAAT
65 GTGTTG-CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAAT
* * * * * *
2064744 GAGACGAACATGGATTCT-AGTAATGATCCGCA
127 AAGACAAACATGAATTCTCA-TACTAATCCCCA
** * * * * * * * * *
2064776 TTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTTAGTAGGATAAATGATATTGACGATTT
1 TTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTT
** * ** * * * ** * * *
2064840 TCTTTTGCGTGGAAATCTTTTCTTTGCC-CTATTTTTCTTAAAATCAAAGTTCATCCCTTAGATA
64 GGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* ** * ** * *
2064904 AGACAAGCATCTATACTTGTA--ACAGCCTCTA
128 AGACAAACATGAATTCTCATACTA-ATCC-CCA
* * * *
2064935 TTCCTTTCAAGATTGGGAAGCCA-AAACACATTGCCATCGTTAGGATACATGACATTGAAGCTTT
1 TTCTTTTCAAGATTAGGAA-CCATAAACACATT-CCCTCATTAGGATACATGACATTGAAGCTTT
* * *
2064999 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAGGTTTGTCTCTTAAATAA
64 GGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAA
* * *
2065064 GACAAAAAAGAATACTCATACTAATCCCCA
129 GACAAACATGAATTCTCATACTAATCCCCA
** * * * * * * * *
2065094 TTCTTTTCAAGATTAGGCGCCATAAACATAGTCGTCTCATTAGGATACACGATATAGATGGTTTG
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * * * * ** * *
2065159 CT-TTCGCAACAAAGGC-TTTCTTCCCACCAATTATTG-TAAAGTCTAAGTTCGTGACTCAAATG
65 GTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
* * * * **
2065221 AGAAAAACCTGGATTCT-AGTAATAATCTTCA
128 AGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * * * * * * * *
2065252 TTCTTTTTGTGATAAGGGACTATAAACACATTCTCCTTATTAGGATAAATCATATTGATGATTTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* * * * ** * * *** * * *
2065317 CTTTTGCATGAAAATCTTTTCTTTGTACTATTATCCTTAAAATCAAAGTTCATCCCTTGAATAAG
65 GTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAG
* * * * *
2065382 ACAAGCAACG-ATTCTCAAAAAC-ATTCTCCA
130 ACAAAC-ATGAATTCTC--ATACTAATCCCCA
* * * *
2065412 TTCTTTTCAAGGTTGGGAACCCA-AAACACATACCCTTCATTAGGATACATAACATT-AATGCTT
1 TTCTTTTCAAGATTAGGAA-CCATAAACACATTCCC-TCATTAGGATACATGACATTGAA-GCTT
* * * * *
2065475 TGGTGTCAT-CAA-AAAAGCTTTTCTTTCCATCGTTTTTGAGAGAATCAAAGTTTGTCTCTTAAA
63 TGGTGT--TGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAA
** *
2065538 TAAGACAAACATGAATAGTCACACTAATCCCCA
126 TAAGACAAACATGAATTCTCATACTAATCCCCA
* * * * * * * * *
2065571 TTCTTTTTAGGATTTGGAACCATAAACATAGTCTTCTCATTAGGATACACT-ATATTGATGCGTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACA-TGACATTGAAGCTTT
* * * * * *
2065635 GGT-TTCGCAACAAAAGC-TTTCTTCCCACGAATTTTTG-TAAAGTCTAAA-TTCATGC-CTCAA
64 GGTGTT-GCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAAAATC-AAAGTTCGT-CTCTTAA
* * * * * **
2065695 ATGAGACAAACATGGATTC-AACTAATGATCTTCA
125 ATAAGACAAACATGAATTCTCA-TACTAATCCCCA
*** * * * *
2065729 TTCTTTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATGA-ATAACATTGATTATCT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGAT-ACATGACATTGA--AGCT
*** * * * ** * * *
2065793 TCT--T-TTGTGTGAAAATCTTTTCGTTGC-CC-TGTTTTCCTTAAAATTAAAGTTCATCCCTTA
62 T-TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT-GATAAAATCAAAGTTCGTCTCTTA
* * * * * *
2065853 AAAAAGACAAGCGTCG-ATTCTCGTAAC-AGTCTCCA
124 AATAAGACAAACAT-GAATTCTCAT-ACTAATCCCCA
* * * * *
2065888 TTCTTTTCAAGATTGGGAACCAAAAACACGTGCCCTTCTTTAGGAT-CTATGACATT-AATGCTT
1 TTCTTTTCAAGATTAGGAACCATAAACACATTCCC-TCATTAGGATAC-ATGACATTGAA-GCTT
* *** ** *
2065951 TGGTGTTGCGAGAAAAGCTTTTCTTTCCATTGTTTTTGATGGAATCAAAGTTTGTCTCTTAAATA
63 TGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATA
*
2066016 AGACAAACATGAATAC-C-TACGCTAATCCCCA
128 AGACAAACATGAATTCTCATA--CTAATCCCCA
* * * * * * * * * *
2066047 TTCTTTTCAAAATTAGGCACCATACACAGAGTCTTCTCATTAGGATACATAATATTGACGCTTTA
1 TTCTTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGAAGCTTTG
* ** * * * * * * *
2066112 GTTTTGTGACAAAGGC-TTTCTTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCT-TCAAATG
65 GTGTTGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAAATCAAAGTTCGT-CTCTTAAATA
* * * * *
2066174 AGACGAACATGGATTCT-AGTAATGATCCGCA
128 AGACAAACATGAATTCTCA-TACTAATCCCCA
** * * * * * *
2066205 TTCATTTT-GTGATTGGGCACAATAAACACATTCTCCTCAGTAGGATAAATGATATTGA
1 TTC-TTTTCAAGATTAGGAACCATAAACACATTC-CCTCATTAGGATACATGACATTGA
2066263 CGATTTTCTT
Statistics
Matches: 3860, Mismatches: 1237, Indels: 717
0.66 0.21 0.12
Matches are distributed among these distances:
155 2 0.00
156 30 0.01
157 78 0.02
158 1322 0.34
159 1922 0.50
160 464 0.12
161 38 0.01
162 4 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (158 bp):
TTCTTTTCAAGATTAGGAACCATAAACACATTCCCTCATTAGGATACATGACATTGAAGCTTTGG
TGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAAATCAAAGTTCGTCTCTTAAATAAGA
CAAACATGAATTCTCATACTAATCCCCA
Found at i:2067034 original size:159 final size:159
Alignment explanation
Indices: 2066339--2067050 Score: 473
Period size: 159 Copynumber: 4.5 Consensus size: 159
2066329 GTAACAGTCT
* * *
2066339 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACA-T-TGTCGTCATTAGGATACATGACATTGAA
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGTCT-TC-TCATTAGGATACATGATATTGAT
* * * * *
2066401 GCTTTGGTATCGCAAGAAAAGCTTTTCTTTCCACCATTTATGATAGAATCAAAATT-TGTCTCTT
63 GCTTT-GTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2066465 AAATAAGACAAACAAGAATACTCATACTAA-CC
127 AAATAAGACAAACATGAATACTCATACTAATCC
* * * *
2066497 ACTATTCTTTTCAAGATTAGGAACCATAAACATAGTCTTCTCATTAAGATACACGATATTGATGC
1 -CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGC
* * * * * * *
2066562 TTTGGTTTCGCAACAAAGGC-TTTCTTCCCAGCAATTTTAG-TA-AAGTCTAAGTTTATGCCT-G
65 TTT-GTTTCGCAAGAAAAGCTTTTCTTTCCA-CTATTTTTGATAGAA-TCAAAG-TTATGCCTCT
* * * * *
2066623 T-AATGAA-ACAAACATGGATTCT-AGTAATGATCT
126 TAAAT-AAGACAAACATGAATACTCA-TACTAATCC
* * ** * * * * * * * *
2066656 TCATTAATTTT-GTGATTAAGCACTATAAACACATTCCTCTCATTAAGATAAATAATATTGATGA
1 CCATT-CTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATG-
* * * * * *** *
2066720 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTAAAATCAAAGTTCAT-CC-CTT
64 CTTTGTTTCGCAAGAAAAGCTTTTCTTT-CCACTATTTTTGATAGAATCAAAGTT-ATGCCTCTT
* * * *
2066782 AAATAAGACAAGCATCG-ATTCTTGCA-AC-GATCT
127 AAATAAGACAAACAT-GAATAC-T-CATACTAATCC
* * * **
2066815 CCATTCTTTTCAAGATTGGGAAGCGA-AAACACATTCCCTTC-C-TTAGGATACATGGCATTGAT
1 CCATTCTTTTCAAGATTAGGAA-CCATAAACACAGT--CTTCTCATTAGGATACATGATATTGAT
* *
2066877 GCTTTGTTGTCACAAGAAAAGCTTTTATTTCCACTATTTTTGATAGAATCAAAGTT-TGCCTCTT
63 GCTTTGTT-TCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTT
*
2066941 AAATAAGACAAACTTGAATACTCATACTAATCC
127 AAATAAGACAAACATGAATACTCATACTAATCC
** * **
2066974 CCATTCTTTTCCGGATTAGGCACCATAAACGA-AGTCTTCTCATTAGGATACATGATATTGATAT
1 CCATTCTTTTCAAGATTAGGAACCATAAAC-ACAGTCTTCTCATTAGGATACATGATATTGATGC
2067038 TTTGGTTTCGCAA
65 TTT-GTTTCGCAA
2067051 CAAAGGTATT
Statistics
Matches: 419, Mismatches: 94, Indels: 80
0.71 0.16 0.13
Matches are distributed among these distances:
157 10 0.02
158 124 0.30
159 259 0.62
160 21 0.05
161 4 0.01
162 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.13, T:0.35
Consensus pattern (159 bp):
CCATTCTTTTCAAGATTAGGAACCATAAACACAGTCTTCTCATTAGGATACATGATATTGATGCT
TTGTTTCGCAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTATGCCTCTTAAAT
AAGACAAACATGAATACTCATACTAATCC
Found at i:2069596 original size:21 final size:20
Alignment explanation
Indices: 2069563--2069603 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
2069553 GAGATGTTGG
2069563 ACATACTAAAAATGCATGAA
1 ACATACTAAAAATGCATGAA
*
2069583 ACATAGCTCAAAATGCATGAA
1 ACATA-CTAAAAATGCATGAA
2069604 CATGGGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.20
Consensus pattern (20 bp):
ACATACTAAAAATGCATGAA
Found at i:2071372 original size:95 final size:95
Alignment explanation
Indices: 2071221--2071866 Score: 664
Period size: 95 Copynumber: 6.9 Consensus size: 95
2071211 TACAATACTA
* ** * * *
2071221 GACTTAAAGATGATAAAGATGCCAATATGCTAATTCAAGGCTAACAATATTGGACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
**
2071286 CAATGTGCTGATTCAAGGATAGCGACATTAG
66 CAATGTGCTGATTCAAGGCCAGCGACATT-G
* * ** * ** * **
2071317 G-TTTAAGGATGGTAAAGGTGCCAATATATTGATTCAAACCCAACGATATTAGACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
* * * *
2071381 TAATGTGTTGATTCAAGGCTAGTGACATTG
66 CAATGTGCTGATTCAAGGCCAGCGACATTG
* * * * *
2071411 GACTCAAAGATTACAAAGGCGCCAATATGCTAATACAAGGCCAACGATATTGGGCTT----GTGC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
* * * *
2071472 TAATGTGCTGATTCAAAGCCAGTGACATTA
66 CAATGTGCTGATTCAAGGCCAGCGACATTG
* * * * * * * * *
2071502 GTCTTGAGGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTAC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
* *
2071567 CAATATGTTGATTCAAGGCCAGCGACATTG
66 CAATGTGCTGATTCAAGGCCAGCGACATTG
* * * *
2071597 GACTTAAAGATGACAAAAGTGCCAATATGCTGATTCAAGGCCAATGATATTAGACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
* * * *
2071662 CAATATGCTAATTCAAGGCCAACAACATTG
66 CAATGTGCTGATTCAAGGCCAGCGACATTG
* * * ** *
2071692 GACTTAAATATGACAAAGGCGCCAATATACTGATTCAAGGCCAGGGATATTAGGCTT----GTGC
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
*
2071753 CAATGTGCTGATTCAAGGCCAGCGACAATG
66 CAATGTGCTGATTCAAGGCCAGCGACATTG
* * *
2071783 GTCTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATT-GAACTTAAAGGTG
1 GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAG-ACTTAAAGGTG
2071847 CCAATGTGCTGATTCAAGGC
65 CCAATGTGCTGATTCAAGGC
2071867 AATGAAATTG
Statistics
Matches: 451, Mismatches: 89, Indels: 21
0.80 0.16 0.04
Matches are distributed among these distances:
90 1 0.00
91 153 0.34
94 2 0.00
95 294 0.65
96 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (95 bp):
GACTTAAAGATGACAAAGGCGCCAATATGCTAATTCAAGGCCAACGATATTAGACTTAAAGGTGC
CAATGTGCTGATTCAAGGCCAGCGACATTG
Found at i:2071563 original size:22 final size:22
Alignment explanation
Indices: 2071538--2071605 Score: 59
Period size: 21 Copynumber: 3.1 Consensus size: 22
2071528 ATGCTAATTC
2071538 AAGGCTAGCAATATTGGACTTA
1 AAGGCTAGCAATATTGGACTTA
* * *
2071560 AAGG-TACCAATATGTTGA-TTC
1 AAGGCTAGCAATAT-TGGACTTA
* * *
2071581 AAGGCCAGCGACATTGGACTTA
1 AAGGCTAGCAATATTGGACTTA
2071603 AAG
1 AAG
2071606 ATGACAAAAG
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
21 17 0.50
22 17 0.50
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (22 bp):
AAGGCTAGCAATATTGGACTTA
Found at i:2071581 original size:43 final size:43
Alignment explanation
Indices: 2071516--2071699 Score: 152
Period size: 43 Copynumber: 4.1 Consensus size: 43
2071506 TGAGGATGAC
* *
2071516 AAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTT
1 AAAGGCACCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
* * * *
2071559 AAAGGTACCAATATGTTGATTCAAGGCCAGCGACATTGGACTT
1 AAAGGCACCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
* *** * *
2071602 AAAGATGACAAAAGTGCCAATATGCTGATTCAAGGCCAATGATATTAGACTT
1 AAAG--G-C---A---CCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
** *
2071654 AAAGGTGCCAATATGCTAATTCAAGGCCAACAACATTGGACTT
1 AAAGGCACCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
2071697 AAA
1 AAA
2071700 TATGACAAAG
Statistics
Matches: 113, Mismatches: 19, Indels: 18
0.75 0.13 0.12
Matches are distributed among these distances:
43 75 0.66
45 1 0.01
49 1 0.01
50 1 0.01
52 35 0.31
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (43 bp):
AAAGGCACCAATATGCTAATTCAAGGCCAGCAACATTGGACTT
Found at i:2071584 original size:21 final size:21
Alignment explanation
Indices: 2071517--2071584 Score: 57
Period size: 21 Copynumber: 3.2 Consensus size: 21
2071507 GAGGATGACA
* * *
2071517 AAGGCACCAATATGCTAATTC
1 AAGGTACCAATATGTTGATTC
* * *
2071538 AAGGCTAGCAATAT-TGGACTTA
1 AAGG-TACCAATATGTTGA-TTC
2071560 AAGGTACCAATATGTTGATTC
1 AAGGTACCAATATGTTGATTC
2071581 AAGG
1 AAGG
2071585 CCAGCGACAT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
21 19 0.54
22 16 0.46
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (21 bp):
AAGGTACCAATATGTTGATTC
Found at i:2071641 original size:19 final size:19
Alignment explanation
Indices: 2071617--2071683 Score: 53
Period size: 19 Copynumber: 3.3 Consensus size: 19
2071607 TGACAAAAGT
2071617 GCCAATATGCTGATTCAAG
1 GCCAATATGCTGATTCAAG
** *
2071636 GCCAATGATATTAGACTTAAAGG
1 GCCAAT-ATGCT-GA-TTCAA-G
*
2071659 TGCCAATATGCTAATTCAAG
1 -GCCAATATGCTGATTCAAG
2071679 GCCAA
1 GCCAA
2071684 CAACATTGGA
Statistics
Matches: 36, Mismatches: 7, Indels: 10
0.68 0.13 0.19
Matches are distributed among these distances:
19 11 0.31
20 4 0.11
21 6 0.17
22 5 0.14
23 4 0.11
24 6 0.17
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.25
Consensus pattern (19 bp):
GCCAATATGCTGATTCAAG
Found at i:2071653 original size:52 final size:50
Alignment explanation
Indices: 2071566--2071734 Score: 163
Period size: 52 Copynumber: 3.4 Consensus size: 50
2071556 CTTAAAGGTA
* * *
2071566 CCAATATGTTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAAGTG
1 CCAATATGCTGATTCAAGGCCAACGACATTAGACTTAAA-ATGAC-AAAGTG
* *
2071618 CCAATATGCTGATTCAAGGCCAATGATATTAGACTT-AAA-G-----GTG
1 CCAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAATGACAAAGTG
* * * *
2071661 CCAATATGCTAATTCAAGGCCAACAACATTGGACTTAAATATGACAAAGGCG
1 CCAATATGCTGATTCAAGGCCAACGACATTAGACTTAAA-ATGACAAA-GTG
*
2071713 CCAATATACTGATTCAAGGCCA
1 CCAATATGCTGATTCAAGGCCA
2071735 GGGATATTAG
Statistics
Matches: 95, Mismatches: 13, Indels: 18
0.75 0.10 0.14
Matches are distributed among these distances:
43 34 0.36
44 2 0.02
45 1 0.01
46 1 0.01
49 1 0.01
50 1 0.01
51 2 0.02
52 53 0.56
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.24
Consensus pattern (50 bp):
CCAATATGCTGATTCAAGGCCAACGACATTAGACTTAAAATGACAAAGTG
Found at i:2071679 original size:21 final size:21
Alignment explanation
Indices: 2071615--2071679 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 21
2071605 GATGACAAAA
*
2071615 GTGCCAATATGCTGATTCAA-
1 GTGCCAATATGCTAATTCAAG
** *
2071635 G-GCCAATGATATTAGACTTAAAG
1 GTGCCAAT-ATGCTA-A-TTCAAG
2071658 GTGCCAATATGCTAATTCAAG
1 GTGCCAATATGCTAATTCAAG
2071679 G
1 G
2071680 CCAACAACAT
Statistics
Matches: 33, Mismatches: 7, Indels: 9
0.67 0.14 0.18
Matches are distributed among these distances:
19 6 0.18
20 4 0.12
21 7 0.21
22 5 0.15
23 5 0.15
24 6 0.18
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (21 bp):
GTGCCAATATGCTAATTCAAG
Found at i:2071750 original size:281 final size:281
Alignment explanation
Indices: 2071223--2071866 Score: 831
Period size: 281 Copynumber: 2.3 Consensus size: 281
2071213 CAATACTAGA
* *** *
2071223 CTTAAAGATGATAAAGATGCCAATATGCTAATTCAAGGCTAACAATATTGGACTTAAAGGTGCCA
1 CTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTGCCA
** * * ** * *
2071288 ATGTGCTGATTCAAGGATAGCGACATTAGGTTTAAGGATGGTAAAGGTGCCAATATATTGATTCA
66 ATGTGCTGATTCAAGGCCAGCGACATTAGGCTTAAAGATGACAAAAGTGCCAATATACTGATTCA
* * * * * ***
2071353 AACCCAACGATATTAGACTTAAAGGTGCTAATGTGTTGATTCAAGGCTAGTGACATTGGACTCAA
131 AACCCAACGATATTAGACTTAAAGGTGCCAATATGCTAATTCAAGGCCAACAACATTGGACTCAA
* * * *
2071418 AGATTACAAAGGCGCCAATATGCTAATACAAGGCCAACGATATTGGGCTTGTGCTAATGTGCTGA
196 AGATGACAAAGGCGCCAATATACTAATACAAGGCCAACGATATTAGGCTTGTGCCAATGTGCTGA
* *
2071483 TTCAAAGCCAGTGACATTAGT
261 TTCAAAGCCAGCGACAATAGT
* * *
2071504 CTTGAGGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTACCA
1 CTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTGCCA
* * *
2071569 ATATGTTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGACAAAAGTGCCAATATGCTGATTC
66 ATGTGCTGATTCAAGGCCAGCGACATTAGG-CTTAAAGATGACAAAAGTGCCAATATACTGATTC
** * *
2071633 AAGGCCAATGATATTAGACTTAAAGGTGCCAATATGCTAATTCAAGGCCAACAACATTGGACTTA
130 AAACCCAACGATATTAGACTTAAAGGTGCCAATATGCTAATTCAAGGCCAACAACATTGGACTCA
* * * **
2071698 AATATGACAAAGGCGCCAATATACTGATTCAAGGCCAGGGATATTAGGCTTGTGCCAATGTGCTG
195 AAGATGACAAAGGCGCCAATATACTAATACAAGGCCAACGATATTAGGCTTGTGCCAATGTGCTG
* *
2071763 ATTCAAGGCCAGCGACAATGGT
260 ATTCAAAGCCAGCGACAATAGT
** * * *
2071785 CTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGAACTTAAAGGTGCCA
1 CTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTGCCA
2071850 ATGTGCTGATTCAAGGC
66 ATGTGCTGATTCAAGGC
2071867 AATGAAATTG
Statistics
Matches: 308, Mismatches: 54, Indels: 2
0.85 0.15 0.01
Matches are distributed among these distances:
280 2 0.01
281 306 0.99
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (281 bp):
CTTAAAGATGACAAAGGCACCAATATGCTAATTCAAGGCTAGCAATATTGGACTTAAAGGTGCCA
ATGTGCTGATTCAAGGCCAGCGACATTAGGCTTAAAGATGACAAAAGTGCCAATATACTGATTCA
AACCCAACGATATTAGACTTAAAGGTGCCAATATGCTAATTCAAGGCCAACAACATTGGACTCAA
AGATGACAAAGGCGCCAATATACTAATACAAGGCCAACGATATTAGGCTTGTGCCAATGTGCTGA
TTCAAAGCCAGCGACAATAGT
Found at i:2071864 original size:186 final size:186
Alignment explanation
Indices: 2071221--2071866 Score: 685
Period size: 186 Copynumber: 3.5 Consensus size: 186
2071211 TACAATACTA
* * * * *
2071221 GACTTAAAGATGATAAAGATGCCAATATGCTAATTCAAGGCTAACAATATTGGACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGAACTTAAAGGTGC
** * ** * *
2071286 CAATGTGCTGATTCAAGGATAGCGACATTAGGTTTAAGGATGGTAAAGGTGCCAATATATTGATT
66 CAATGTGCTGATTCAAGGCCAGCGACATT-GGCTTAAGGATGACAAAGGCGCCAATATACTGATT
** * * * * *
2071351 CAAACCCAACGATATTAGACTTAAAGGTGCTAATGTGTTGATTCAAGGCTAGTGACATTG
130 CAAGGCCAGCGATATTAGGCTT--A-GTGCCAATGTGTTGATTCAAGGCCAGCGACATTG
* * * * **
2071411 GACTCAAAGATTACAAAGGCGCCAATATGCTAATACAAGGCCAACGATATTGGGCTT----GTGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGAACTTAAAGGTGC
* * * * * * * *
2071472 TAATGTGCTGATTCAAAGCCAGTGACATTAGTCTTGAGGATGACAAAGGCACCAATATGCTAATT
66 CAATGTGCTGATTCAAGGCCAGCGACATT-GGCTTAAGGATGACAAAGGCGCCAATATACTGATT
* * * *
2071537 CAAGGCTAGCAATATT-GGACTTAAAGGTACCAATATGTTGATTCAAGGCCAGCGACATTG
130 CAAGGCCAGCGATATTAGG-CTT--A-GTGCCAATGTGTTGATTCAAGGCCAGCGACATTG
* * *
2071597 GACTTAAAGATGACAAAAGTGCCAATATGCTGATTCAAGGCCAATGATATT-AGACTTAAAGGTG
1 GACTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGA-ACTTAAAGGTG
* * * * **
2071661 CCAATATGCTAATTCAAGGCCAACAACATTGGACTTAAATATGACAAAGGCGCCAATATACTGAT
65 CCAATGTGCTGATTCAAGGCCAGCGACATTGG-CTTAAGGATGACAAAGGCGCCAATATACTGAT
* * *
2071726 TCAAGGCCAGGGATATTAGGCTT-GTGCCAATGTGCTGATTCAAGGCCAGCGACAATG
129 TCAAGGCCAGCGATATTAGGCTTAGTGCCAATGTGTTGATTCAAGGCCAGCGACATTG
* *
2071783 GTCTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAGCGATATTGAACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGAACTTAAAGGTGC
2071848 CAATGTGCTGATTCAAGGC
66 CAATGTGCTGATTCAAGGC
2071867 AATGAAATTG
Statistics
Matches: 375, Mismatches: 72, Indels: 22
0.80 0.15 0.05
Matches are distributed among these distances:
185 1 0.00
186 253 0.67
187 1 0.00
189 1 0.00
190 117 0.31
191 2 0.01
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26
Consensus pattern (186 bp):
GACTTAAAGATGACAAAGGTGCCAATATGCTAATTCAAGGCCAACGATATTGAACTTAAAGGTGC
CAATGTGCTGATTCAAGGCCAGCGACATTGGCTTAAGGATGACAAAGGCGCCAATATACTGATTC
AAGGCCAGCGATATTAGGCTTAGTGCCAATGTGTTGATTCAAGGCCAGCGACATTG
Found at i:2071967 original size:27 final size:27
Alignment explanation
Indices: 2071920--2072000 Score: 80
Period size: 27 Copynumber: 3.1 Consensus size: 27
2071910 TTTAGAAGGA
* *
2071920 GGTGCCATGAA-TTCATCGACTTAAAAG
1 GGTGCCACGAAGTT-ATGGACTTAAAAG
*
2071947 GGTGCCACGAAGTTATGGACTTAGAA-
1 GGTGCCACGAAGTTATGGACTTAAAAG
*
2071973 GGTGCCAC-AGAGTTGTGGA-TTAAAAG
1 GGTGCCACGA-AGTTATGGACTTAAAAG
2071999 GG
1 GG
2072001 AAAAGGTACC
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
25 6 0.13
26 18 0.39
27 20 0.43
28 2 0.04
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (27 bp):
GGTGCCACGAAGTTATGGACTTAAAAG
Found at i:2072301 original size:60 final size:58
Alignment explanation
Indices: 2072197--2072417 Score: 210
Period size: 60 Copynumber: 3.6 Consensus size: 58
2072187 CTTAAAAGGG
* **
2072197 AAAAGGGTGCCACAGAGTTATGG-CTTTAAAAAGAAAAGGGTGCCATGGAGTTGTGGACTA
1 AAAAGGGTGCCACGGAGTTATGGAC-TTAAAAAGAAAA-AATGCCAT-GAGTTGTGGACTA
* * *
2072257 AAAAGGGTGCCACGGAGTTGTGGACTTAAAACCGAAAAAATGCCACAGAGTTGTGGACTTA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAA-AGAAAAAATGCCA-TGAGTTGTGGAC-TA
* * * * * * *
2072318 AAAGGGAAAGATGCCACGGATTTATGGACTTAAAAGGAAAGATTTCCATGAGGTTGTGGACTT
1 AAAAGG---G-TGCCACGGAGTTATGGACTTAAAAAGAAAAAATGCCATGA-GTTGTGGACTA
*
2072381 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGGAAAA
1 AAAAGGGTGCCACGGAGTTATGGACTTAAAAAGAAAA
2072418 CGTGCCACGG
Statistics
Matches: 134, Mismatches: 18, Indels: 19
0.78 0.11 0.11
Matches are distributed among these distances:
59 28 0.21
60 44 0.33
61 13 0.10
63 8 0.06
64 19 0.14
65 22 0.16
ACGTcount: A:0.37, C:0.13, G:0.29, T:0.21
Consensus pattern (58 bp):
AAAAGGGTGCCACGGAGTTATGGACTTAAAAAGAAAAAATGCCATGAGTTGTGGACTA
Found at i:2072352 original size:93 final size:95
Alignment explanation
Indices: 2072162--2072355 Score: 216
Period size: 93 Copynumber: 2.1 Consensus size: 95
2072152 GGCTTAAAAG
** **
2072162 AAAAGGATGCCACGAAGTTATAGGACTTAAAAGGGAAAAGGGTGCCACAGAGTTATGGCTTTAAA
1 AAAAGGATGCCACGAAGTTATAGGACTTAAAACCGAAAAGAATGCCACAGAGTTATGGCTTTAAA
* * *
2072227 AAGAAAAGGGTGCCATGGAGTTGTGGACTA
66 AAGAAAAGGATGCCACGGAGTTATGGACTA
* * * *
2072257 AAAAGGGTGCCACGGAGTTGT-GGACTTAAAACCGAAAA-AATGCCACAGAGTTGTGGAC-TTAA
1 AAAAGGATGCCACGAAGTTATAGGACTTAAAACCGAAAAGAATGCCACAGAGTTATGG-CTTTAA
* * * *
2072319 AAGGGAAA-GATGCCACGGATTTATGGACTT
65 AAAGAAAAGGATGCCACGGAGTTATGGACTA
2072349 AAAAGGA
1 AAAAGGA
2072356 AAGATTTCCA
Statistics
Matches: 82, Mismatches: 16, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
92 23 0.28
93 25 0.30
94 16 0.20
95 18 0.22
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (95 bp):
AAAAGGATGCCACGAAGTTATAGGACTTAAAACCGAAAAGAATGCCACAGAGTTATGGCTTTAAA
AAGAAAAGGATGCCACGGAGTTATGGACTA
Found at i:2072381 original size:191 final size:193
Alignment explanation
Indices: 2071943--2072387 Score: 452
Period size: 191 Copynumber: 2.3 Consensus size: 193
2071933 CATCGACTTA
*
2071943 AAAGGGTGCCACGAAGTTATGGACTT---AG--AAGG-TGCCAC-AGAGTTGTGGA-TTAAAAGG
1 AAAGGATGCCAC-AAGTTATGGACTTAAAAGAAAAGGATGCCACGA-AGTTGTGGACTTAAAAGG
* * * *
2072000 GAAAAGGTACCATAGAGTTGTGGGTTTTAAAAAGAAAAAGGTGTCATGGAGTTATGGACTTAAAA
64 GAAAAGGTACCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTT-AAA
* * **
2072065 GGAAAAGGTGCCACAGAATTGTGGACTTAAAAAGGAAAGATGCCATGGTAGTTATGGACTTAAAA
128 -GAAAAGGTGCCACAGAATTGTGGACTTAAAAAGAAAAAATGCCACAGTAGTTATGGACTTAAAA
2072130 GC
192 GC
* * *
2072132 AAAGGATGCCACAAGTTGTGGGCTTAAAAGAAAAGGATGCCACGAAGTTATAGGACTTAAAAGGG
1 AAAGGATGCCACAAGTTATGGACTTAAAAGAAAAGGATGCCACGAAGTTGT-GGACTTAAAAGGG
* * *
2072197 AAAAGGGTGCCACAGAGTTAT-GGCTTTAAAAAGAAAAGGGTGCCATGGAGTTGTGGAC-T-AA-
65 AAAA-GGTACCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTTAAAG
* * * * *
2072258 AAAGGGTGCCACGGAGTTGTGGACTTAAAACCGAAAAAATGCCACAG-AGTTGTGGACTTAAAAG
129 AAAAGGTGCCACAGAATTGTGGACTTAAAA-AGAAAAAATGCCACAGTAGTTATGGACTTAAAA-
*
2072322 GG
192 GC
* * * * * *
2072324 AAA-GATGCCACGGATTTATGGACTTAAAAGGAAA-GATTTCCATGAGGTTGTGGACTTAAAAGG
1 AAAGGATGCCAC-AAGTTATGGACTTAAAAGAAAAGGA-TGCCACGAAGTTGTGGACTTAAAAGG
2072387 G
64 G
2072388 TGCCACGGAG
Statistics
Matches: 212, Mismatches: 30, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
188 11 0.05
189 11 0.05
191 67 0.32
192 42 0.20
193 6 0.03
194 11 0.05
195 5 0.02
196 46 0.22
197 13 0.06
ACGTcount: A:0.37, C:0.11, G:0.30, T:0.22
Consensus pattern (193 bp):
AAAGGATGCCACAAGTTATGGACTTAAAAGAAAAGGATGCCACGAAGTTGTGGACTTAAAAGGGA
AAAGGTACCACAGAGTTATGGGCTTTAAAAAGAAAAAGGTGCCATGGAGTTATGGACTTAAAGAA
AAGGTGCCACAGAATTGTGGACTTAAAAAGAAAAAATGCCACAGTAGTTATGGACTTAAAAGC
Found at i:2072404 original size:27 final size:27
Alignment explanation
Indices: 2072230--2072413 Score: 118
Period size: 27 Copynumber: 6.2 Consensus size: 27
2072220 CTTTAAAAAG
* *
2072230 AAAAGGGTGCCATGGAGTTGTGGACTA
1 AAAAGGGTGCCACGGAGTTGTGGACTT
2072257 AAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
** *
2072284 AAAACCGAAAAAATGCCACAGAGTTGTGGACTT
1 AAAA--G----GGTGCCACGGAGTTGTGGACTT
* *
2072317 AAAAGGGAAAGATGCCACGGATTTATGGACTT
1 AAAA-GG---G-TGCCACGGAGTTGTGGACTT
* *
2072349 AAAAGGAAAGATTTCCA-TGAGGTTGTGGACTT
1 AAAAGG---G--TGCCACGGA-GTTGTGGACTT
*
2072381 AAAAGGGTGCCACGGAGTTATGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
2072408 AAAAGG
1 AAAAGG
2072414 AAAACGTGCC
Statistics
Matches: 125, Mismatches: 19, Indels: 26
0.74 0.11 0.15
Matches are distributed among these distances:
27 49 0.39
28 2 0.02
29 2 0.02
31 8 0.06
32 41 0.33
33 23 0.18
ACGTcount: A:0.35, C:0.13, G:0.30, T:0.22
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:2072478 original size:34 final size:34
Alignment explanation
Indices: 2072381--2072566 Score: 179
Period size: 34 Copynumber: 5.5 Consensus size: 34
2072371 TTGTGGACTT
*
2072381 AAAAGGGTGCCACGGAGTTATGGACTTAAAAGG-
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
* *
2072414 AAAA-CGTGCCACGGAGTTAG-GGGCTCTAAAAGGA
1 AAAAGGGTGCCACGGAGTT-GTGGACT-TAAAAGGA
* *
2072448 AAAAGGGTACCACGAAGTTGTGGACTTAAAAAGG-
1 AAAAGGGTGCCACGGAGTTGTGGACTT-AAAAGGA
* *
2072482 AAAAGGGTGCCATGGAGTTGTGGGCTTTGAAAA-GA
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT-AAAAGGA
*
2072517 AAAA-GTTGCCACGGAGTTGTGGACTTAAAA-GA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
* * *
2072549 AAAATGATGCCACTGAGT
1 AAAAGGGTGCCACGGAGT
2072567 CACGGACTTG
Statistics
Matches: 127, Mismatches: 17, Indels: 18
0.78 0.10 0.11
Matches are distributed among these distances:
32 27 0.21
33 24 0.19
34 45 0.35
35 31 0.24
ACGTcount: A:0.37, C:0.13, G:0.31, T:0.19
Consensus pattern (34 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:2072515 original size:35 final size:33
Alignment explanation
Indices: 2071973--2072566 Score: 389
Period size: 33 Copynumber: 18.4 Consensus size: 33
2071963 GGACTTAGAA
*
2071973 GGTGCCACAGAGTTGTGGA-TTAAAAGGGAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAG
* ** ** * *
2072005 GGTACCATAGAGTTGTGGGTTTTAAAAAGAAAAA
1 GGTGCCACGGAGTTGT-GGACTTAAAAGGAAAAG
* * *
2072039 GGTGTCATGGAGTTATGGACTTAAAAGGAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
* *
2072071 GGTGCCACAGAATTGTGGACTTAAAAAGG-AAA-
1 GGTGCCACGGAGTTGTGGACTT-AAAAGGAAAAG
* * * *
2072103 GATGCCATGGTAGTTATGGACTTAAAA-GCAAAG
1 GGTGCCACGG-AGTTGTGGACTTAAAAGGAAAAG
* * *
2072136 GATGCCAC-AAGTTGTGGGCTTAAAA-GAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
* * *
2072167 GATGCCACGAAGTTATAGGACTTAAAAGGGAAAAG
1 GGTGCCACGGAGTTGT-GGACTTAAAA-GGAAAAG
* * *
2072202 GGTGCCACAGAGTTATGG-CTTTAAAAAGAAAAG
1 GGTGCCACGGAGTTGTGGAC-TTAAAAGGAAAAG
*
2072235 GGTGCCATGGAGTTGTGGAC-T---A--AAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
*
2072262 GGTGCCACGGAGTTGTGGACTTAAAACCGAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAG
** * *
2072295 AATGCCACAGAGTTGTGGACTTAAAAGGGAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
* * *
2072327 GATGCCACGGATTTATGGACTTAAAAGG-AAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
** * *
2072359 ATTTCCA-TGAGGTTGTGGACTT------AAAAG
1 GGTGCCACGGA-GTTGTGGACTTAAAAGGAAAAG
*
2072386 GGTGCCACGGAGTTATGGACTTAAAAGGAAAA-
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
* *
2072418 CGTGCCACGGAGTTAG-GGGCTCTAAAAGGAAAAAG
1 GGTGCCACGGAGTT-GTGGACT-TAAAAGG-AAAAG
* *
2072453 GGTACCACGAAGTTGTGGACTTAAAAAGGAAAAG
1 GGTGCCACGGAGTTGTGGACTT-AAAAGGAAAAG
* * *
2072487 GGTGCCATGGAGTTGTGGGCTTTGAAAA-GAAAAA
1 GGTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAG
* * *
2072521 GTTGCCACGGAGTTGTGGACTTAAAAGAAAAAT
1 GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
* *
2072554 GATGCCACTGAGT
1 GGTGCCACGGAGT
2072567 CACGGACTTG
Statistics
Matches: 448, Mismatches: 76, Indels: 75
0.75 0.13 0.13
Matches are distributed among these distances:
27 42 0.09
28 3 0.01
29 1 0.00
31 34 0.08
32 117 0.26
33 125 0.28
34 80 0.18
35 46 0.10
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (33 bp):
GGTGCCACGGAGTTGTGGACTTAAAAGGAAAAG
Found at i:2072538 original size:68 final size:68
Alignment explanation
Indices: 2072381--2072546 Score: 214
Period size: 68 Copynumber: 2.5 Consensus size: 68
2072371 TTGTGGACTT
*
2072381 AAAAGGGTGCCACGGAGTTATGGACTT-AAAAGGAAAACGTGCCACGGAGTTAGGGGCTCTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAACGTGCCACGGAGTTAGGGGCTCTAAAA
2072445 GGA
66 GGA
* * * * *
2072448 AAAAGGGTACCACGAAGTTGTGGACTTAAAAAGGAAAAGGGTGCCATGGAGTT-GTGGGCTTTGA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAA-CGTGCCACGGAGTTAG-GGGCTCT-A
2072512 AAA-GA
63 AAAGGA
*
2072517 AAAA-GTTGCCACGGAGTTGTGGACTTAAAA
1 AAAAGGGTGCCACGGAGTTGTGGACTTAAAA
2072547 GAAAAATGAT
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
67 24 0.28
68 34 0.40
69 24 0.28
70 4 0.05
ACGTcount: A:0.36, C:0.13, G:0.32, T:0.19
Consensus pattern (68 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTAAAAAGGAAAACGTGCCACGGAGTTAGGGGCTCTAAAA
GGA
Found at i:2072552 original size:32 final size:32
Alignment explanation
Indices: 2071971--2072608 Score: 371
Period size: 32 Copynumber: 19.8 Consensus size: 32
2071961 ATGGACTTAG
* *
2071971 AAGGTGCCACAGAGTTGTGGA-TTAAAAGGGAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAA-GAAA
* ** **
2072003 AAGGTACCATAGAGTTGTGGGTTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGT-GGACTT-AAAAGAAA
* * * *
2072037 AAGGTGTCATGGAGTTATGGACTTAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * *
2072069 AAGGTGCCACAGAATTGTGGACTTAAAA-AGGA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGA-AA
* * * *
2072101 AAGATGCCATGGTAGTTATGGACTTAAAAG-CA
1 AAGGTGCCACGG-AGTTGTGGACTTAAAAGAAA
* *
2072133 AAGGATGCCAC-AAGTTGTGGGCTTAAAAG-AA
1 AAGG-TGCCACGGAGTTGTGGACTTAAAAGAAA
* *
2072164 AAGGATGCCACGAAGTTATAGGACTTAAAAGGGAAA
1 AAGG-TGCCACGGAGTTGT-GGACTTAAAA--GAAA
* * *
2072200 AGGGTGCCACAGAGTTATGG-CTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAAA
* *
2072233 AGGGTGCCATGGAGTTGTGGAC-T---A-AAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
*
2072260 AGGGTGCCACGGAGTTGTGGACTTAAAACCGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAA--GAAA
* * **
2072294 AA-ATGCCACAGAGTTGTGGACTTAAAAGGGA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * * *
2072325 AAGATGCCACGGATTTATGGACTTAAAAG-GA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * *
2072356 AAGATTTCCA-TGAGGTTGTGGACTTAAAAG---
1 AAG-GTGCCACGGA-GTTGTGGACTTAAAAGAAA
* *
2072386 --GGTGCCACGGAGTTATGGACTTAAAAGGAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* *
2072416 AACGTGCCACGGAGTTAG-GGGCTCTAAAAGGAAA
1 AAGGTGCCACGGAGTT-GTGGACT-TAAAA-GAAA
* *
2072450 AAGGGTACCACGAAGTTGTGGACTTAAAAAGGAAA
1 AA-GGTGCCACGGAGTTGTGGACTT-AAAA-GAAA
* * *
2072485 AGGGTGCCATGGAGTTGTGGGCTTTGAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGAC-TT-AAAAGAAA
*
2072519 AAGTTGCCACGGAGTTGTGGACTTAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
* * *** **
2072551 AATGATGCCACTGAGTCACGGACTTGGAAGAAA
1 AA-GGTGCCACGGAGTTGTGGACTTAAAAGAAA
* **
2072584 AAGGATGCCACTGAGTCATGGACTT
1 AAGG-TGCCACGGAGTTGTGGACTT
2072609 GGAGAAGAAT
Statistics
Matches: 483, Mismatches: 83, Indels: 79
0.75 0.13 0.12
Matches are distributed among these distances:
27 43 0.09
28 5 0.01
31 39 0.08
32 136 0.28
33 130 0.27
34 73 0.15
35 52 0.11
36 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.30, T:0.21
Consensus pattern (32 bp):
AAGGTGCCACGGAGTTGTGGACTTAAAAGAAA
Found at i:2072609 original size:33 final size:32
Alignment explanation
Indices: 2072513--2072654 Score: 135
Period size: 33 Copynumber: 4.4 Consensus size: 32
2072503 GGGCTTTGAA
* * ** **
2072513 AAGAAAAAGTTGCCACGGAGTTGTGGACTTAA
1 AAGAAAAAGATGCCACTGAGTCATGGACTTGG
*
2072545 AAGAAAAATGATGCCACTGAGTCACGGACTTGG
1 AAGAAAAA-GATGCCACTGAGTCATGGACTTGG
2072578 AAGAAAAAGGATGCCACTGAGTCATGGACTTGG
1 AAGAAAAA-GATGCCACTGAGTCATGGACTTGG
* * * *
2072611 -AGAAGAA-TTGCCACTCAGTTATGGACTTGG
1 AAGAAAAAGATGCCACTGAGTCATGGACTTGG
*
2072641 ATGAAAAAGGATGC
1 AAGAAAAA-GATGC
2072655 TACTTGATGA
Statistics
Matches: 90, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
30 20 0.22
31 5 0.06
32 14 0.16
33 51 0.57
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (32 bp):
AAGAAAAAGATGCCACTGAGTCATGGACTTGG
Found at i:2074319 original size:12 final size:11
Alignment explanation
Indices: 2074297--2074372 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
2074287 AGAGAAAGAA
*
2074297 GAGAGAGGAGG
1 GAGATAGGAGG
2074308 GATGATAGGAGG
1 GA-GATAGGAGG
*
2074320 AGAGACAGGA--
1 -GAGATAGGAGG
*
2074330 GAGATAGTA--
1 GAGATAGGAGG
2074339 GAGATAGGAGG
1 GAGATAGGAGG
2074350 GATGATAGGAGG
1 GA-GATAGGAGG
2074362 AGAGATAGGAG
1 -GAGATAGGAG
2074373 AGATAATAGA
Statistics
Matches: 54, Mismatches: 5, Indels: 11
0.77 0.07 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.07
12 31 0.57
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:2074329 original size:24 final size:24
Alignment explanation
Indices: 2074296--2074381 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2074286 AAGAGAAAGA
*
2074296 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
* *
2074320 AGAGACAGGA--GA-GAT---AGT
1 AGAGATAGGAGGGATGATAGGAGG
2074338 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGATAGGAGG
* *
2074362 AGAGATAGGAGAGATAATAG
1 AGAGATAGGAGGGATGATAG
2074382 AGAGAGGAGA
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 29 0.58
ACGTcount: A:0.42, C:0.01, G:0.45, T:0.12
Consensus pattern (24 bp):
AGAGATAGGAGGGATGATAGGAGG
Found at i:2074331 original size:9 final size:9
Alignment explanation
Indices: 2074317--2074394 Score: 63
Period size: 9 Copynumber: 9.0 Consensus size: 9
2074307 GGATGATAGG
*
2074317 AGGAGAGAC
1 AGGAGAGAT
2074326 AGGAGAGAT
1 AGGAGAGAT
*
2074335 AGTAGAGAT
1 AGGAGAGAT
*
2074344 AGGAGGGAT
1 AGGAGAGAT
* *
2074353 --GATAG-G
1 AGGAGAGAT
2074359 AGGAGAGAT
1 AGGAGAGAT
2074368 AGGAGAGAT
1 AGGAGAGAT
** *
2074377 AATAGAGAG
1 AGGAGAGAT
2074386 AGGAGAGAT
1 AGGAGAGAT
2074395 GACAGGAGGA
Statistics
Matches: 51, Mismatches: 15, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
7 3 0.06
8 4 0.08
9 44 0.86
ACGTcount: A:0.44, C:0.01, G:0.44, T:0.12
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:2074348 original size:42 final size:42
Alignment explanation
Indices: 2074287--2074405 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
2074277 TAGCCCTCAA
* *
2074287 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
2074329 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
2074371 AGAGATAATAGAGAGAGGAGAGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
2074406 GAGAGAAGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.44, C:0.02, G:0.45, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:2074381 original size:12 final size:12
Alignment explanation
Indices: 2074341--2074386 Score: 51
Period size: 12 Copynumber: 3.9 Consensus size: 12
2074331 AGATAGTAGA
*
2074341 GATAGGAGGGAT
1 GATAGGAGAGAT
2074353 GATAGGAGGAGA-
1 GATAGGA-GAGAT
2074365 GATAGGAGAGAT
1 GATAGGAGAGAT
*
2074377 AATA-GAGAGA
1 GATAGGAGAGA
2074387 GGAGAGATGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 10 0.33
12 17 0.57
13 3 0.10
ACGTcount: A:0.43, C:0.00, G:0.43, T:0.13
Consensus pattern (12 bp):
GATAGGAGAGAT
Found at i:2079566 original size:243 final size:243
Alignment explanation
Indices: 2079138--2079623 Score: 783
Period size: 243 Copynumber: 2.0 Consensus size: 243
2079128 GAGAGTGATT
*
2079138 CTTAGGTTCTTGAGTGAGCCAATTTTTCTGGATCATATCATGAGGCCAAGACTCTTGTGGCGATC
1 CTTAGGTTCTTGAGTGAGCCAATTTTTCTGGATCATATCAAGAGGCCAAGACTCTTGTGGCGATC
* * *
2079203 ATTCCTTTTGGCTTATCAATCTTGTGATTGTCGTGCCATCCTTCATCTCTAATTTATTCTAGTTT
66 ATTCCTTTTGGCTTATCAATCTTGTGATTGTCGCGCCATCCTTCATCTCTAATCTATTCCAGTTT
* * * * * **
2079268 TATTATTTTTTCTGCTTCTTTCAATTTCTGTTCTTGCTTTAATAATTCTGTTTGTTATTAGAAAT
131 TATTACTCTTTCTGCTTCTTTAAATTTATGTTCTCGCACTAATAATTCTGTTTGTTATTAGAAAT
2079333 CCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATCA
196 CCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATCA
** * *
2079381 CTTAGGTTCTTGAGTGAGCCAATTTTTCTGGATGTTTTCAAGAGGCCAAGACTCTTGTGGTGATC
1 CTTAGGTTCTTGAGTGAGCCAATTTTTCTGGATCATATCAAGAGGCCAAGACTCTTGTGGCGATC
* *
2079446 ATTCCTTTTGGCTTATCAATCTTGTGATTGTGGCGCCATCCTTTATCTCTAATCTATTCCAGTTT
66 ATTCCTTTTGGCTTATCAATCTTGTGATTGTCGCGCCATCCTTCATCTCTAATCTATTCCAGTTT
* * *
2079511 TGTTACTCTTTCTGCTTCTTTAAATTTATGTTCTCGCACTAATAATTTTGTTTGTTGTTAGAAAT
131 TATTACTCTTTCTGCTTCTTTAAATTTATGTTCTCGCACTAATAATTCTGTTTGTTATTAGAAAT
*
2079576 TCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATCA
196 CCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATCA
2079624 ATTGGTATCA
Statistics
Matches: 222, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
243 222 1.00
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (243 bp):
CTTAGGTTCTTGAGTGAGCCAATTTTTCTGGATCATATCAAGAGGCCAAGACTCTTGTGGCGATC
ATTCCTTTTGGCTTATCAATCTTGTGATTGTCGCGCCATCCTTCATCTCTAATCTATTCCAGTTT
TATTACTCTTTCTGCTTCTTTAAATTTATGTTCTCGCACTAATAATTCTGTTTGTTATTAGAAAT
CCATCTCAAGATCATTATTTAGGCAACCTTGGATCATGGTTGTCATCA
Found at i:2080636 original size:42 final size:42
Alignment explanation
Indices: 2080561--2080671 Score: 118
Period size: 42 Copynumber: 2.6 Consensus size: 42
2080551 AGATAGGAAT
* * *
2080561 GATGATATG-AGGAGAGATAAGAGATATAGTAGAGATAGAAGG
1 GATGATA-GAAGGAGAGATAAGAGAGATAATAGAGAGAGAAGG
** **
2080603 GATGATAGAAGGAGAGATTGGAGAGATAATAGAGAGAGGTGG
1 GATGATAGAAGGAGAGATAAGAGAGATAATAGAGAGAGAAGG
*
2080645 GATGATAGAAGGAGGAGAGAAGA-AGAT
1 GATGATAGAAGGA-GAGATAAGAGAGAT
2080672 GGAAGAATGA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
41 1 0.02
42 50 0.88
43 6 0.11
ACGTcount: A:0.44, C:0.00, G:0.40, T:0.16
Consensus pattern (42 bp):
GATGATAGAAGGAGAGATAAGAGAGATAATAGAGAGAGAAGG
Found at i:2082717 original size:24 final size:24
Alignment explanation
Indices: 2082684--2082769 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
2082674 AAGAGAAAGA
*
2082684 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
2082708 AGAGACAGGA--GAT-AT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
2082726 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
2082750 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
2082770 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 3 0.06
21 4 0.08
22 3 0.06
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.44, T:0.12
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:2082743 original size:42 final size:42
Alignment explanation
Indices: 2082684--2082793 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
2082674 AAGAGAAAGA
* *
2082684 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGATATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
2082726 AGAGATAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
2082768 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
2082794 GAGAGAAGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.41, C:0.03, G:0.46, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:2092368 original size:30 final size:30
Alignment explanation
Indices: 2092332--2092971 Score: 476
Period size: 30 Copynumber: 20.5 Consensus size: 30
2092322 GTTGTCATCA
*
2092332 CCACTGAGTCGTGGACCTGGAGAAGAGATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
* *
2092362 CCACTGAGAC-T----TTAGGA-AGGAGATG
1 CCACTGAGTCGTGGACTT-GGAGAAGAGATG
* *
2092387 CCAC-GAAGTCATGGACTTTGGGAGAAAAAAGATG
1 CCACTG-AGTCGTGGAC-TT-GGAG--AAGAGATG
* * *
2092421 CCATTAAGTCGTGGACTTGGAAGAAAAAAGATG
1 CCACTGAGTCGTGGACTTGG-AG--AAGAGATG
*
2092454 CCACTGAGTCATGGACTTGGAGAAGAGATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
* * *
2092484 CCACTAAGTTGTGGACTTGGAGAAGATATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
*
2092514 CCACTGAGTCGTGGACTTTAGGAGAAAAATGATG
1 CCACTGAGTCGTGGAC-TT-GGAG-AAGA-GATG
* * *
2092548 CCACTAAGTCATGGACTTTGGGAGAAAAAGGATG
1 CCACTGAGTCGTGGAC-TT-GGAG-AAGA-GATG
*
2092582 CCACTGAGTCGTGGACTTGGAGAAAAGATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
*
2092612 CCACTGAGTCGTGGACTTTAGGA-AGGAGATG
1 CCACTGAGTCGTGGAC-TT-GGAGAAGAGATG
* * * *
2092643 CCAGTGAGTCATGGAATTTGTGAGAAAAGGGATG
1 CCACTGAGTCGTGG-ACTTG-GAG--AAGAGATG
* * *
2092677 CCACTAAGTCATGGACTTGGAAGAAAAAAGATG
1 CCACTGAGTCGTGGACTTGG-AG--AAGAGATG
* *
2092710 CCAATGAGTCGTGGACTTGGAGAAGGGATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
** *
2092740 CCACTGAGTCACGGACTTTAGGA-AGGAGATG
1 CCACTGAGTCGTGGAC-TT-GGAGAAGAGATG
* * *
2092771 CCATTGAGTCATGGACTTTGGAAGAAAAAAGATG
1 CCACTGAGTCGTGGAC-TTGG-AG--AAGAGATG
* * * *
2092805 CCACTAAGTCATGGACTTGGAAGAAAAAAGATT
1 CCACTGAGTCGTGGACTTGG-AG--AAGAGATG
*
2092838 CCACTGAGTCGTGGACTTGGAGAAGAGAAG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
* *
2092868 CCACTGAGTCATGGACTTTAGGA-AGGAGATG
1 CCACTGAGTCGTGGAC-TT-GGAGAAGAGATG
*
2092899 CCACTGAGTCGTGGATTTGGAGAAGAGATG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATG
*
2092929 CCACTGAGTCGTGGACTT-TAGGAAG-GATG
1 CCACTGAGTCGTGGACTTGGA-GAAGAGATG
2092958 CCACTGAGTCGTGG
1 CCACTGAGTCGTGG
2092972 TCCTTTGGAA
Statistics
Matches: 505, Mismatches: 70, Indels: 71
0.78 0.11 0.11
Matches are distributed among these distances:
24 1 0.00
25 15 0.03
26 4 0.01
29 23 0.05
30 148 0.29
31 83 0.16
32 27 0.05
33 101 0.20
34 103 0.20
ACGTcount: A:0.32, C:0.15, G:0.32, T:0.21
Consensus pattern (30 bp):
CCACTGAGTCGTGGACTTGGAGAAGAGATG
Found at i:2092626 original size:128 final size:127
Alignment explanation
Indices: 2092332--2092946 Score: 822
Period size: 128 Copynumber: 4.9 Consensus size: 127
2092322 GTTGTCATCA
*
2092332 CCACTGAGTCGTGGACCTGGAGAAGAGATGCCACT--G--A--GACTTTAGGAAGGAGATGCCAC
1 CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
* *
2092391 -GAAGTCATGGACTTTGGGAGAAAAAAGATGCCATTAAGTCGTGGACTTGGAAGAAAAAAGATG
66 TG-AGTCATGGACTTT-GGAGAAAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATG
* * ** * *
2092454 CCACTGAGTCATGGACTTGGAGAAGAGATGCCACTAAGTTGTGGAC-TT-GGAGAAGATATGCCA
1 CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGA-AGGAGATGCCA
* * * *
2092517 CTGAGTCGTGGACTTTAGGAGAAAAATGATGCCACTAAGTCATGGACTTTGGGAGAAAAAGGATG
65 CTGAGTCATGGACTTT-GGAGAAAAAAGATGCCACTAAGTCATGGAC-TTGGAAGAAAAAAGATG
* * *
2092582 CCACTGAGTCGTGGACTTGGAGAAAAGATGCCACTGAGTCGTGGACTTTAGGAAGGAGATGCCAG
1 CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
* **
2092647 TGAGTCATGGAATTTGTGAGAAAAGGGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATG
66 TGAGTCATGGACTTTG-GAGAAAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATG
* * * *
2092710 CCAATGAGTCGTGGACTTGGAGAAGGGATGCCACTGAGTCACGGACTTTAGGAAGGAGATGCCAT
1 CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
*
2092775 TGAGTCATGGACTTTGGAAGAAAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATT
66 TGAGTCATGGACTTTGG-AGAAAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATG
*
2092838 CCACTGAGTCGTGGACTTGGAGAAGAGAAGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
1 CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
* * * *
2092903 TGAGTCGTGGA-TTTGGAG--AAGAGATGCCACTGAGTCGTGGACTT
66 TGAGTCATGGACTTTGGAGAAAAAAGATGCCACTAAGTCATGGACTT
2092947 TAGGAAGGAT
Statistics
Matches: 436, Mismatches: 44, Indels: 24
0.87 0.09 0.05
Matches are distributed among these distances:
122 33 0.08
124 24 0.06
126 5 0.01
127 57 0.13
128 263 0.60
129 51 0.12
130 3 0.01
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.21
Consensus pattern (127 bp):
CCACTGAGTCGTGGACTTGGAGAAGAGATGCCACTGAGTCATGGACTTTAGGAAGGAGATGCCAC
TGAGTCATGGACTTTGGAGAAAAAAGATGCCACTAAGTCATGGACTTGGAAGAAAAAAGATG
Found at i:2101562 original size:95 final size:95
Alignment explanation
Indices: 2101422--2101648 Score: 287
Period size: 95 Copynumber: 2.4 Consensus size: 95
2101412 TACAATACTA
* * ** * *
2101422 GACTTAAAGAT-GTAAAGATGCAAATATGTTGATTCAAGGCTAGCAATATTGGA-TATAAAGGTG
1 GACTTAAAGATGGTAAAGGTGCCAATATACTGATTCAAAGCCAGCAATATTGGACT-TAAAGGTG
* *
2101485 CCAATGTGCTGATTCAAGGCCAGCGACGTTG
65 CCAATGTGCTGAATCAAGGCCAGCGACATTG
* *
2101516 GGCTTAAAGATGGTAAAGGTGCCAATATACTGATTGAAAGCCAGCAATATTGGACTTAAAGGTGC
1 GACTTAAAGATGGTAAAGGTGCCAATATACTGATTCAAAGCCAGCAATATTGGACTTAAAGGTGC
*
2101581 CAATGTGCTGAATCAAGGCCAGTGACATTG
66 CAATGTGCTGAATCAAGGCCAGCGACATTG
* ** * *
2101611 GACTCAAAGATGACAAAGGCGCCGATATACTGATTCAA
1 GACTTAAAGATGGTAAAGGTGCCAATATACTGATTCAA
2101649 GGCCGTTTTC
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
94 10 0.09
95 102 0.90
96 1 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (95 bp):
GACTTAAAGATGGTAAAGGTGCCAATATACTGATTCAAAGCCAGCAATATTGGACTTAAAGGTGC
CAATGTGCTGAATCAAGGCCAGCGACATTG
Done.