Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3265628
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.28
Warning! 491382 characters in sequence are not A, C, G, or T
File 16 of 17
Found at i:3011504 original size:77 final size:77
Alignment explanation
Indices: 3011345--3011517 Score: 199
Period size: 77 Copynumber: 2.2 Consensus size: 77
3011335 CAGGACGTAT
*
3011345 TTCATTTCCTTTTTTCCTTTTATCCTTAAAGAGTAGGACACACTTCTTTTCCTTTGTCCTCAAGG
1 TTCATTTCCCTTTTTCCTTTTATCCTTAAAGAGTAGGACACACTTCTTTTCCTTTGTCCTCAAGG
* **
3011410 AGCAGGATGCAC
66 AACAGGACACAC
* **
3011422 TTCATTTCCCTTTTTCCTTTTGT-CTTCAAAGAGTAGGATGCACTTCTTTTCCCTTTGTCCTCGA
1 TTCATTTCCCTTTTTCCTTTTATCCTT-AAAGAGTAGGACACACTTCTTTT-CCTTTGTCCTC-A
* *
3011486 A-GAATAGGACATAC
63 AGGAACAGGACACAC
* *
3011500 -TCATTTTCCTTTATCCTT
1 TTCATTTCCCTTTTTCCTT
3011518 AAAGAGTAGG
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
76 3 0.04
77 58 0.71
78 19 0.23
79 2 0.02
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.43
Consensus pattern (77 bp):
TTCATTTCCCTTTTTCCTTTTATCCTTAAAGAGTAGGACACACTTCTTTTCCTTTGTCCTCAAGG
AACAGGACACAC
Found at i:3011879 original size:118 final size:118
Alignment explanation
Indices: 3011614--3011871 Score: 381
Period size: 118 Copynumber: 2.2 Consensus size: 118
3011604 GCGACACCTG
* * * *
3011614 AGTCAAAACCTGCACAAGCTAGTGGCACTTAAGTTCGAGTCAAGTCCAAATTAGTTGGCACTTAT
1 AGTCAAAGCCCGCACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTCCAAATTAGTTGGCACCTAT
* ** * *
3011679 CTAAGGAGGTCAAGCCTTAGAATGTCAAAGCCCACATGAGTTGGTGGTACCCT
66 CTAAGAAGGTCAAGCCTTAGAACATCAAAGCCCACACGAGTTGGTGGCACCCT
* * * *
3011732 AGTCAAAGCCCACACAAGCTGGTGGCACCTAAGTTTGAGTCAAGTCCAAATTAGTTGGCACCTGT
1 AGTCAAAGCCCGCACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTCCAAATTAGTTGGCACCTAT
*
3011797 CTAAGAAGTTCAAGCCTTAGAACATCAAAGCCCACACGAGTTGGTGGCACCCT
66 CTAAGAAGGTCAAGCCTTAGAACATCAAAGCCCACACGAGTTGGTGGCACCCT
*
3011850 AGTTAAAGCCCGCACAAGCTAG
1 AGTCAAAGCCCGCACAAGCTAG
3011872 CAGCACCTGA
Statistics
Matches: 123, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
118 123 1.00
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.22
Consensus pattern (118 bp):
AGTCAAAGCCCGCACAAGCTAGTGGCACCTAAGTTCGAGTCAAGTCCAAATTAGTTGGCACCTAT
CTAAGAAGGTCAAGCCTTAGAACATCAAAGCCCACACGAGTTGGTGGCACCCT
Found at i:3011989 original size:31 final size:31
Alignment explanation
Indices: 3011952--3012032 Score: 81
Period size: 31 Copynumber: 2.6 Consensus size: 31
3011942 GCACCCTACT
3011952 CAAAGCCCGCACAAGCTGGCAACACCCGAGC
1 CAAAGCCCGCACAAGCTGGCAACACCCGAGC
* * * * * * *
3011983 CTAAGCCCGTACGAGTTGGCAGCACCTGAGT
1 CAAAGCCCGCACAAGCTGGCAACACCCGAGC
* *
3012014 CAAAGCTCACACAAGCTGG
1 CAAAGCCCGCACAAGCTGG
3012033 TGGCACCTAA
Statistics
Matches: 37, Mismatches: 13, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.30, C:0.35, G:0.25, T:0.11
Consensus pattern (31 bp):
CAAAGCCCGCACAAGCTGGCAACACCCGAGC
Found at i:3012151 original size:37 final size:37
Alignment explanation
Indices: 3012008--3012156 Score: 166
Period size: 37 Copynumber: 4.2 Consensus size: 37
3011998 TTGGCAGCAC
*
3012008 CTGAGTCAAAGCTCACACAAGCTGGTGGCACCTAAGT
1 CTGAGTCAAAGCCCACACAAGCTGGTGGCACCTAAGT
* * *
3012045 TTGAGTCAAAGCCCGCACAAGCTGGCGGCA-C----T
1 CTGAGTCAAAGCCCACACAAGCTGGTGGCACCTAAGT
* * * *
3012077 C-GAGTGAAAAGCCTACACAAGCTAGTGGTACCTAAGT
1 CTGAGT-CAAAGCCCACACAAGCTGGTGGCACCTAAGT
3012114 CTGAGTCAAAGCCCACACAAGCTGGTGGCACCTAAGT
1 CTGAGTCAAAGCCCACACAAGCTGGTGGCACCTAAGT
*
3012151 CCGAGT
1 CTGAGT
3012157 TAAGTCCACA
Statistics
Matches: 89, Mismatches: 16, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
31 4 0.04
32 19 0.21
33 1 0.01
36 1 0.01
37 60 0.67
38 4 0.04
ACGTcount: A:0.30, C:0.28, G:0.26, T:0.17
Consensus pattern (37 bp):
CTGAGTCAAAGCCCACACAAGCTGGTGGCACCTAAGT
Found at i:3012727 original size:20 final size:21
Alignment explanation
Indices: 3012690--3012732 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 21
3012680 TACAATTTGC
*
3012690 ATTGATACAATTAGTGAATGT
1 ATTGATACAATAAGTGAATGT
3012711 ATTGATAC-ATAAGTGAATGT
1 ATTGATACAATAAGTGAATGT
3012731 AT
1 AT
3012733 CAATACATGT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.40, C:0.05, G:0.19, T:0.37
Consensus pattern (21 bp):
ATTGATACAATAAGTGAATGT
Found at i:3012738 original size:20 final size:20
Alignment explanation
Indices: 3012702--3012740 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3012692 TGATACAATT
**
3012702 AGTGAATGTATTGATACATA
1 AGTGAATGTATCAATACATA
3012722 AGTGAATGTATCAATACAT
1 AGTGAATGTATCAATACAT
3012741 GTCTCAAATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.08, G:0.18, T:0.33
Consensus pattern (20 bp):
AGTGAATGTATCAATACATA
Found at i:3012829 original size:20 final size:19
Alignment explanation
Indices: 3012804--3012852 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
3012794 AAAAAAATTA
*
3012804 TATCGATACATAAGTAAATG
1 TATCGATACAT-ACTAAATG
* *
3012824 TATCGATACATTCTAGATG
1 TATCGATACATACTAAATG
3012843 TATCGATACA
1 TATCGATACA
3012853 ATTTGCTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 15 0.58
20 11 0.42
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.33
Consensus pattern (19 bp):
TATCGATACATACTAAATG
Found at i:3015294 original size:27 final size:27
Alignment explanation
Indices: 3015253--3015321 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
3015243 TTTGATTGTT
*
3015253 GGGGATACTCTAACCCT-GCTCTTCCGA
1 GGGGATACTCCAACCCTCGCTCTTCC-A
*
3015280 GGGGATACTCCAA-CCTCGCTTTTCCA
1 GGGGATACTCCAACCCTCGCTCTTCCA
*
3015306 AGGGATACTCCAACCC
1 GGGGATACTCCAACCC
3015322 CGTTTTTCTT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 16 0.43
27 21 0.57
ACGTcount: A:0.22, C:0.35, G:0.20, T:0.23
Consensus pattern (27 bp):
GGGGATACTCCAACCCTCGCTCTTCCA
Found at i:3015328 original size:26 final size:27
Alignment explanation
Indices: 3015254--3015329 Score: 91
Period size: 26 Copynumber: 2.9 Consensus size: 27
3015244 TTGATTGTTG
* * * *
3015254 GGGATACTCTAACCCTGCTCTTCCGAG
1 GGGATACTCCAACCCCGCTTTTCCGAA
*
3015281 GGGATACTCCAACCTCGCTTTTCC-AA
1 GGGATACTCCAACCCCGCTTTTCCGAA
*
3015307 GGGATACTCCAACCCCGTTTTTC
1 GGGATACTCCAACCCCGCTTTTC
3015330 TTCAAAATCT
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
26 22 0.52
27 20 0.48
ACGTcount: A:0.20, C:0.34, G:0.18, T:0.28
Consensus pattern (27 bp):
GGGATACTCCAACCCCGCTTTTCCGAA
Found at i:3018125 original size:98 final size:97
Alignment explanation
Indices: 3017951--3018138 Score: 270
Period size: 98 Copynumber: 1.9 Consensus size: 97
3017941 GTCCCTGACG
** *
3017951 ATGACAATTTGGGTAAAAATAAGACTTAAATCTTGACAAGTTTAAAAATGGGGTTAAAGTATCCT
1 ATGACAATTTAAGCAAAAATAAGACTTAAATCTTGACAAGTTTAAAAATGGGGTTAAAGTATCCT
*
3018016 CTCAAAAGAATGGGGTTAGAGTATCCCCGATA
66 CTCAAAAGAATGGAGTTAGAGTATCCCCGATA
* **
3018048 ATGACAATTTAAGCAAAAATAAGATTTAAATCTTGAC-AGTTTTTAAAAATGGGGTTGGAGTATC
1 ATGACAATTTAAGCAAAAATAAGACTTAAATCTTGACAAG--TTTAAAAATGGGGTTAAAGTATC
**
3018112 CTCTCGGAAGAATGGAGTTAGAGTATC
64 CTCTCAAAAGAATGGAGTTAGAGTATC
3018139 TTCTCAGAAG
Statistics
Matches: 80, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
96 2 0.03
97 33 0.41
98 45 0.56
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.29
Consensus pattern (97 bp):
ATGACAATTTAAGCAAAAATAAGACTTAAATCTTGACAAGTTTAAAAATGGGGTTAAAGTATCCT
CTCAAAAGAATGGAGTTAGAGTATCCCCGATA
Found at i:3018135 original size:27 final size:26
Alignment explanation
Indices: 3018099--3018166 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 26
3018089 TTTAAAAATG
*
3018099 GGGTTGGAGTATCCTCTCGGAAGAAT
1 GGGTTGGAGTATCCTCTCAGAAGAAT
* *
3018125 GGAGTTAGAGTATCTTCTCAGAAGAAT
1 GG-GTTGGAGTATCCTCTCAGAAGAAT
3018152 AGGGTTGGAGTATCC
1 -GGGTTGGAGTATCC
3018167 CTGATAAATA
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 2 0.06
27 31 0.89
28 2 0.06
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.28
Consensus pattern (26 bp):
GGGTTGGAGTATCCTCTCAGAAGAAT
Found at i:3025390 original size:16 final size:16
Alignment explanation
Indices: 3025369--3025437 Score: 84
Period size: 16 Copynumber: 4.3 Consensus size: 16
3025359 GTCAATCTCG
3025369 AATTTTGATCATTTTA
1 AATTTTGATCATTTTA
* *
3025385 AATTTTGATTATTTCA
1 AATTTTGATCATTTTA
* *
3025401 TACTTTGATCATTTTA
1 AATTTTGATCATTTTA
* *
3025417 AATTTAGATCATTTTG
1 AATTTTGATCATTTTA
3025433 AATTT
1 AATTT
3025438 GAGATTTTTA
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.55
Consensus pattern (16 bp):
AATTTTGATCATTTTA
Found at i:3025451 original size:15 final size:15
Alignment explanation
Indices: 3025369--3025451 Score: 53
Period size: 16 Copynumber: 5.3 Consensus size: 15
3025359 GTCAATCTCG
*
3025369 AATTTTGATCATTTTA
1 AATTTAGAT-ATTTTA
* *
3025385 AATTTTGATTATTTCA
1 AATTTAGA-TATTTTA
*
3025401 TACTTT-GATCATTTTA
1 -AATTTAGAT-ATTTTA
*
3025417 AATTTAGATCATTTTG
1 AATTTAGAT-ATTTTA
3025433 AATTTGAGAT-TTTTA
1 AATTT-AGATATTTTA
3025448 AATT
1 AATT
3025452 CTAAATTTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
15 13 0.23
16 34 0.61
17 9 0.16
ACGTcount: A:0.31, C:0.06, G:0.08, T:0.54
Consensus pattern (15 bp):
AATTTAGATATTTTA
Found at i:3025809 original size:20 final size:20
Alignment explanation
Indices: 3025786--3025823 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
3025776 TGTTTTGATG
3025786 TATTATTTTAAAT-TTTTTAA
1 TATT-TTTTAAATATTTTTAA
3025806 TATTTTTTAAATATTTTT
1 TATTTTTTAAATATTTTT
3025824 TTATAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TATTTTTTAAATATTTTTAA
Found at i:3025818 original size:11 final size:10
Alignment explanation
Indices: 3025786--3025824 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
3025776 TGTTTTGATG
3025786 TATTATTTTAA
1 TATT-TTTTAA
3025797 -ATTTTTTAA
1 TATTTTTTAA
3025806 TATTTTTTAAA
1 TATTTTTT-AA
3025817 TATTTTTT
1 TATTTTTT
3025825 TATAAATATG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 6 0.23
10 10 0.38
11 10 0.38
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TATTTTTTAA
Found at i:3025941 original size:25 final size:25
Alignment explanation
Indices: 3025899--3025948 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
3025889 ACATGTACAA
*
3025899 ATATATCAAATTACATATAAATATTT
1 ATATATCAAATTAAATATAAA-ATTT
3025925 ATATAT-AAATTAAATATAAAATTT
1 ATATATCAAATTAAATATAAAATTT
3025949 CAAAATTAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 13 0.57
26 6 0.26
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (25 bp):
ATATATCAAATTAAATATAAAATTT
Found at i:3026761 original size:32 final size:32
Alignment explanation
Indices: 3026715--3026797 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
3026705 TTATATATTC
* * **
3026715 ATATAAATTCTGACACATTAATAATTTATTTT
1 ATATAGATTTTGACACATTAATAATACATTTT
* **
3026747 ATATAGATTTTGACATATTTGTAATACATTTT
1 ATATAGATTTTGACACATTAATAATACATTTT
3026779 ATATAGATTTTGACACATT
1 ATATAGATTTTGACACATT
3026798 TATCTATTCA
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.47
Consensus pattern (32 bp):
ATATAGATTTTGACACATTAATAATACATTTT
Found at i:3028598 original size:4 final size:4
Alignment explanation
Indices: 3028589--3028619 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
3028579 ACATATACCA
3028589 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTC
1 CTCC CTCC CTCC CTCC CTCC CTCC CTCC CTC
3028620 TTCTTAATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.00, C:0.74, G:0.00, T:0.26
Consensus pattern (4 bp):
CTCC
Found at i:3034763 original size:190 final size:190
Alignment explanation
Indices: 3034440--3034815 Score: 587
Period size: 190 Copynumber: 2.0 Consensus size: 190
3034430 CTTTCTGAAA
*
3034440 TGGCAGGGCTTGTGACCCACAATAGCAGCAAAAAGATTGCTAGCGCTTTATGCAAGTGTTACACA
1 TGGCAGGGCTTGTGACCCACAATAGCAGCAAAAAGATTGCTAGCGCTATATGCAAGTGTTACACA
* * *
3034505 CAGAGATAGAGAGAGAAAACTCTTGGTAACTAAATTTATGTTAAAAGTTTGAAGTACAAACAGAA
66 CAGAGATAGAGAGAGAAAACCCTTAGCAACTAAATTTATGTTAAAAGTTTGAAGTACAAACAGAA
* *
3034570 CTTTTTATAGGAGATAAATGCTCACCTTGTTTAAGGCACCAATTGGGCATCAGCTATTGT
131 CTTTTTAAAGGAGATAAAAGCTCACCTTGTTTAAGGCACCAATTGGGCATCAGCTATTGT
* * * *
3034630 TGGCAGGGTTTGTGAACCCAGAATGGCAGCAAAAAGATTGCTATCGCTATATGCAAGTGCTTACA
1 TGGCAGGGCTTGTG-ACCCACAATAGCAGCAAAAAGATTGCTAGCGCTATATGCAAGTG-TTACA
* *
3034695 CACAGAGATA-A-AGAGAGAACCCTTAGCAACTAAATTTATGTTGAAA-TTTAGAAGTACAAACA
64 CACAGAGATAGAGAGAGAAAACCCTTAGCAACTAAATTTATGTTAAAAGTTT-GAAGTACAAACA
*
3034757 GAACTTTTTAAAGGAGATAAAAGCTCACCTTGTTTAAGGCACCAATTGGGTATCAGCTA
128 GAACTTTTTAAAGGAGATAAAAGCTCACCTTGTTTAAGGCACCAATTGGGCATCAGCTA
3034816 CTGTCTGGGT
Statistics
Matches: 170, Mismatches: 13, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
189 3 0.02
190 111 0.65
191 41 0.24
192 15 0.09
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.26
Consensus pattern (190 bp):
TGGCAGGGCTTGTGACCCACAATAGCAGCAAAAAGATTGCTAGCGCTATATGCAAGTGTTACACA
CAGAGATAGAGAGAGAAAACCCTTAGCAACTAAATTTATGTTAAAAGTTTGAAGTACAAACAGAA
CTTTTTAAAGGAGATAAAAGCTCACCTTGTTTAAGGCACCAATTGGGCATCAGCTATTGT
Found at i:3036077 original size:5 final size:5
Alignment explanation
Indices: 3036067--3036107 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
3036057 ACTAAGCAAT
3036067 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG A
3036108 GAGAAAGTCA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:3036570 original size:26 final size:27
Alignment explanation
Indices: 3036541--3036610 Score: 83
Period size: 26 Copynumber: 2.6 Consensus size: 27
3036531 CCGTCAATTT
3036541 TTAATATTTATAAATATTTAA-TTAAA
1 TTAATATTTATAAATATTTAATTTAAA
*
3036567 TTAATAATTATATAA-ATTTAATTTAAA
1 TTAATATTTATA-AATATTTAATTTAAA
3036594 TTAA-ATTATATTAAATA
1 TTAATATT-TA-TAAATA
3036611 ATTATTATTT
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
26 19 0.51
27 15 0.41
28 3 0.08
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
TTAATATTTATAAATATTTAATTTAAA
Found at i:3036636 original size:18 final size:17
Alignment explanation
Indices: 3036598--3036649 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
3036588 TTTAAATTAA
*
3036598 ATTATATTAAATAATTATT
1 ATTAT-TTAAAT-ATTTTT
3036617 ATTTATTTAAATATTTTT
1 A-TTATTTAAATATTTTT
*
3036635 ATAATTTAAA-ATTTT
1 ATTATTTAAATATTTT
3036650 ATATAATTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
16 5 0.17
17 8 0.27
18 6 0.20
19 7 0.23
20 4 0.13
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTATTTAAATATTTTT
Found at i:3036643 original size:17 final size:17
Alignment explanation
Indices: 3036621--3036657 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
3036611 ATTATTATTT
3036621 ATTTAAATATTTT-TATA
1 ATTTAAA-ATTTTATATA
3036638 ATTTAAAATTTTATATA
1 ATTTAAAATTTTATATA
3036655 ATT
1 ATT
3036658 GAATTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (17 bp):
ATTTAAAATTTTATATA
Found at i:3036744 original size:13 final size:12
Alignment explanation
Indices: 3036699--3036759 Score: 58
Period size: 11 Copynumber: 5.3 Consensus size: 12
3036689 AAATTATGAA
3036699 AATATAAAATA-
1 AATATAAAATAT
* *
3036710 AAT-TAAAACAC
1 AATATAAAATAT
*
3036721 AATA-CAAATAT
1 AATATAAAATAT
3036732 AATATAAAAATAT
1 AATAT-AAAATAT
3036745 AAT-TAAAATAT
1 AATATAAAATAT
3036756 AATA
1 AATA
3036760 CGACACAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
10 6 0.15
11 24 0.60
12 1 0.03
13 9 0.22
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (12 bp):
AATATAAAATAT
Found at i:3037564 original size:24 final size:24
Alignment explanation
Indices: 3037537--3037588 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
3037527 ACATAACATT
*
3037537 AAAAATTAAT-TAAAATAAAATACA
1 AAAAATAAATATAAAAT-AAATACA
* *
3037561 AAAAATAAATATGAAATAAATATA
1 AAAAATAAATATAAAATAAATACA
3037585 AAAA
1 AAAA
3037589 TTTATAAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.23
Consensus pattern (24 bp):
AAAAATAAATATAAAATAAATACA
Found at i:3039992 original size:20 final size:20
Alignment explanation
Indices: 3039967--3040060 Score: 127
Period size: 20 Copynumber: 4.7 Consensus size: 20
3039957 TTTACCCATA
*
3039967 TGTATCGATACATTTCGCAT
1 TGTATCGATACATTTCTCAT
3039987 TGTATCGATACATTTCTCAT
1 TGTATCGATACATTTCTCAT
* * *
3040007 TATCTCGATACATTACTCAT
1 TGTATCGATACATTTCTCAT
*
3040027 TGTATCGATACATTT-TACAA
1 TGTATCGATACATTTCT-CAT
3040047 TGTATCGATACATT
1 TGTATCGATACATT
3040061 CAAGCATTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
19 1 0.02
20 64 0.98
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTCTCAT
Found at i:3042438 original size:28 final size:28
Alignment explanation
Indices: 3042405--3042478 Score: 107
Period size: 28 Copynumber: 2.6 Consensus size: 28
3042395 TTTCACAATT
*
3042405 GGGGATATTCCAACCCCGTTATTT-CATCA
1 GGGGATACTCCAACCCCGTTATTTCCA--A
3042434 -GGGATACTCCAACCCCGTTATTTCCAA
1 GGGGATACTCCAACCCCGTTATTTCCAA
3042461 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
3042479 GCTTTATATC
Statistics
Matches: 42, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
27 1 0.02
28 39 0.93
29 2 0.05
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCCAA
Found at i:3042575 original size:28 final size:29
Alignment explanation
Indices: 3042514--3042587 Score: 84
Period size: 28 Copynumber: 2.7 Consensus size: 29
3042504 TTTTATAATC
*
3042514 AGGGG-TACTCCAACCCCGTTATGTCATCG
1 AGGGGATACTCCAATCCCGTTATGTCA-CG
*
3042543 A--GGATACTCCAATCCCGTTATTTC-CG
1 AGGGGATACTCCAATCCCGTTATGTCACG
*
3042569 AGGGGATACTCCATTCCCG
1 AGGGGATACTCCAATCCCG
3042588 ATTTTATTTC
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.08
27 2 0.05
28 33 0.85
29 1 0.03
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (29 bp):
AGGGGATACTCCAATCCCGTTATGTCACG
Found at i:3042612 original size:109 final size:109
Alignment explanation
Indices: 3042413--3042613 Score: 287
Period size: 109 Copynumber: 1.8 Consensus size: 109
3042403 TTGGGGATAT
*
3042413 TCCAACCCCGTTATTTCATCAGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCC
1 TCCAACCCCGTTATGTCATCAGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCC
* ***
3042478 GGCTTTATATCTAAAATATTGATTTTTTTTATAATCAGGGGTAC
66 GACTTTATATCTAAAATACCAATTTTTTTTATAATCAGGGGTAC
* * **
3042522 TCCAACCCCGTTATGTCATC-GAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCATTCC
1 TCCAACCCCGTTATGTCATCAG-GGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCC
* *
3042586 CGATTTTATTTCTAAAATACCAATTTTT
65 CGACTTTATATCTAAAATACCAATTTTT
3042614 CACAATCGGG
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
108 1 0.01
109 79 0.99
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (109 bp):
TCCAACCCCGTTATGTCATCAGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCC
GACTTTATATCTAAAATACCAATTTTTTTTATAATCAGGGGTAC
Found at i:3042627 original size:51 final size:50
Alignment explanation
Indices: 3042570--3042737 Score: 210
Period size: 51 Copynumber: 3.3 Consensus size: 50
3042560 TTATTTCCGA
* *
3042570 GGGGATACTCCATTCCCGATTTTATTTCTAAAATACCAATTTTTCACAATC
1 GGGGATACTCCA-ACCCGATTTTATTTCTAAAACACCAATTTTTCACAATC
* *
3042621 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTTTCACAATC
1 GGGGATACTCCAAC-CCGATTTTATTTCTAAAACACCAATTTTTCACAATC
* ** * * * *
3042672 GGGGATACTCCAACCCCAGCCTTATTTCTAAAGCATCGATTTTCCACAATC
1 GGGGATACTCCAACCCGA-TTTTATTTCTAAAACACCAATTTTTCACAATC
3042723 GGGGATACTCCAACC
1 GGGGATACTCCAACC
3042738 GTGTTATTTT
Statistics
Matches: 102, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
50 3 0.03
51 99 0.97
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.31
Consensus pattern (50 bp):
GGGGATACTCCAACCCGATTTTATTTCTAAAACACCAATTTTTCACAATC
Found at i:3042777 original size:130 final size:129
Alignment explanation
Indices: 3042621--3042943 Score: 395
Period size: 130 Copynumber: 2.5 Consensus size: 129
3042611 TTTCACAATC
*
3042621 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
* * *
3042686 CCC-AGCCTTA-TTTCTAAAGCATC-GATTTTCCACAATCGGGGATACTCCAA-CCGTGTTATTT
65 CCCGA-CCTTATTTTC-AAAACA-CAAATTTTCCACAATCAGGGATACTCCAATCC-TGTTATTT
3042747 -TCGA
126 CT-GA
* * * *
3042751 GGGGATACTCCAATCCCGATTTTATTTCCAGAACACCAATCTCTCACAATTGGGGATACTCCAAC
1 GGGGATACTCCAA-CCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
** * *
3042816 CCCGATTTTATTTTCAAAACACAAATTTTCTATAATCAGGGATACTCCAATCCTGTTATTTCTGA
65 CCCGACCTTATTTTCAAAACACAAATTTTCCACAATCAGGGATACTCCAATCCTGTTATTTCTGA
* * * *
3042881 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCGATTTTTCATAATCGGGTATACTCCA
1 GGGGATACTCCAACCC-GATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCA
3042944 GCCCTGTTGT
Statistics
Matches: 166, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
129 4 0.02
130 153 0.92
131 9 0.05
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.32
Consensus pattern (129 bp):
GGGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
CCGACCTTATTTTCAAAACACAAATTTTCCACAATCAGGGATACTCCAATCCTGTTATTTCTGA
Found at i:3042858 original size:51 final size:51
Alignment explanation
Indices: 3042752--3042865 Score: 140
Period size: 51 Copynumber: 2.2 Consensus size: 51
3042742 TATTTTCGAG
* * * **
3042752 GGGATACTCCAATCCCGATTTTATTTCCAGAACACCAATCTCTCACAATTG
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATCTCTCACAATCA
* * *
3042803 GGGATACTCCAACCCCGATTTTATTTTCAAAACACAAAT-TTTCTATAATCA
1 GGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATCTCTC-ACAATCA
3042854 GGGATACTCCAA
1 GGGATACTCCAA
3042866 TCCTGTTATT
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
50 3 0.06
51 51 0.94
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.30
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATCTCTCACAATCA
Found at i:3042860 original size:181 final size:181
Alignment explanation
Indices: 3042539--3042865 Score: 478
Period size: 181 Copynumber: 1.8 Consensus size: 181
3042529 CCGTTATGTC
* * *
3042539 ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCATTCCCGATTTTATTTCTAAAAT
1 ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTATTTCCAAAAC
* * * * *
3042604 ACCAATTTTTCACAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTTTCACA
66 ACCAATCTCTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATTTTTCACA
*
3042669 ATCGGGGATACTCCAACCCCAGCCTTATTTCTAAAGCATCGATTTTCCACA
131 ATCAGGGATACTCCAACCCCAGCCTTATTTCTAAAGCATCGATTTTCCACA
* * * *
3042720 ATCGGGGATACTCCAA-CCGTGTTATTTTCGAGGGGATACTCCAATCCCGATTTTATTTCCAGAA
1 ATCGAGGATACTCCAATCC-CGTTATTTCCGAGGGGATACTCCAATCCCGATTTTATTTCCAAAA
* *
3042784 CACCAATCTCTCACAATTGGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAA-TTTTCTA
65 CACCAATCTCTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATTTTTC-A
*
3042848 TAATCAGGGATACTCCAA
129 CAATCAGGGATACTCCAA
3042866 TCCTGTTATT
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
180 7 0.05
181 121 0.95
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.31
Consensus pattern (181 bp):
ATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAATCCCGATTTTATTTCCAAAAC
ACCAATCTCTCACAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAACACAAATTTTTCACA
ATCAGGGATACTCCAACCCCAGCCTTATTTCTAAAGCATCGATTTTCCACA
Found at i:3042950 original size:79 final size:79
Alignment explanation
Indices: 3042802--3042951 Score: 223
Period size: 79 Copynumber: 1.9 Consensus size: 79
3042792 TCTCACAATT
*
3042802 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCTATAATCAGGGATACTCCAAT
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCTATAATCAGGGATACTCCAAC
3042867 CCTGTTATTTCTGA
66 CCTGTTATTTCTGA
* **
3042881 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCGATTTT-TCATAATC-GGGTATACTCCA
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCT-ATAATCAGGG-ATACTCCA
*
3042944 GCCCTGTT
64 ACCCTGTT
3042952 GTTATCTCCA
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
78 4 0.06
79 60 0.94
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACAAATTTTCTATAATCAGGGATACTCCAAC
CCTGTTATTTCTGA
Found at i:3048262 original size:20 final size:20
Alignment explanation
Indices: 3048207--3048264 Score: 89
Period size: 20 Copynumber: 2.9 Consensus size: 20
3048197 TAAAAAATCC
* *
3048207 AAATGTATCGATACAATGAT
1 AAATGTATCGATACATTTAT
3048227 AAATGTATCGATACATTTAT
1 AAATGTATCGATACATTTAT
*
3048247 TAATGTATCGATACATTT
1 AAATGTATCGATACATTT
3048265 CCTTAGCAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (20 bp):
AAATGTATCGATACATTTAT
Found at i:3049511 original size:21 final size:21
Alignment explanation
Indices: 3049464--3049515 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
3049454 TGACATGGTC
* *
3049464 TTGTATCGATACATTCACTTA
1 TTGTATCGATAAATTAACTTA
3049485 -TGTATCGATAAATTAACTTA
1 TTGTATCGATAAATTAACTTA
3049505 TTGTATCGATA
1 TTGTATCGATA
3049516 TAAATTGTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.64
21 10 0.36
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (21 bp):
TTGTATCGATAAATTAACTTA
Found at i:3050783 original size:20 final size:20
Alignment explanation
Indices: 3050758--3050811 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
3050748 CTGCCAGTTT
*
3050758 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTATC
*
3050778 CATGTATCAATACAATTATC
1 CATGTATCGATACAATTATC
3050798 CATGTATCGATACA
1 CATGTATCGATACA
3050812 TTGCATCGAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:3053011 original size:20 final size:21
Alignment explanation
Indices: 3052986--3053025 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
3052976 TTTGTTGATG
*
3052986 ATTTTGATGA-AAAATGAAGT
1 ATTTTGAAGAGAAAATGAAGT
3053006 ATTTTGAAGAGAAAATGAAG
1 ATTTTGAAGAGAAAATGAAG
3053026 AAATTTGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.47, C:0.00, G:0.23, T:0.30
Consensus pattern (21 bp):
ATTTTGAAGAGAAAATGAAGT
Found at i:3053032 original size:21 final size:20
Alignment explanation
Indices: 3052988--3053032 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
3052978 TGTTGATGAT
* * *
3052988 TTTGATGAAAAATGAAGTAT
1 TTTGAAGAAAAATGAAGAAA
3053008 TTTGAAGAGAAAATGAAGAAA
1 TTTGAAGA-AAAATGAAGAAA
3053029 TTTG
1 TTTG
3053033 TAAAAGATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.47, C:0.00, G:0.22, T:0.31
Consensus pattern (20 bp):
TTTGAAGAAAAATGAAGAAA
Found at i:3059354 original size:13 final size:13
Alignment explanation
Indices: 3059314--3059366 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
3059304 CCGTTAGAAG
3059314 CAATGTATCGATA
1 CAATGTATCGATA
3059327 CAA--T-TC-AT-
1 CAATGTATCGATA
3059335 C-ATGTATCGATA
1 CAATGTATCGATA
3059347 CAATGTATCGATA
1 CAATGTATCGATA
3059360 CAATGTA
1 CAATGTA
3059367 CCATGTATTG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 1 0.03
9 3 0.09
10 4 0.12
11 3 0.09
12 1 0.03
13 21 0.62
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3059356 original size:33 final size:33
Alignment explanation
Indices: 3059314--3059382 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
3059304 CCGTTAGAAG
*
3059314 CAATGTATCGATACAAT-TCATCATGTATCGATA
1 CAATGTATCGATACAATGT-ACCATGTATCGATA
*
3059347 CAATGTATCGATACAATGTACCATGTATTGATA
1 CAATGTATCGATACAATGTACCATGTATCGATA
3059380 CAA
1 CAA
3059383 ACAGTGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (33 bp):
CAATGTATCGATACAATGTACCATGTATCGATA
Found at i:3062679 original size:52 final size:52
Alignment explanation
Indices: 3062601--3062729 Score: 204
Period size: 52 Copynumber: 2.5 Consensus size: 52
3062591 CGAAATATGA
* * *
3062601 AAATTTACCCGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
*
3062653 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
* *
3062705 AAATTTGCCTGCATATATTGATACA
1 AAATTTGCCTGCATGTATCGATACA
3062730 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.31, C:0.18, G:0.16, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:3062742 original size:52 final size:52
Alignment explanation
Indices: 3062601--3062749 Score: 176
Period size: 52 Copynumber: 2.9 Consensus size: 52
3062591 CGAAATATGA
* * * *
3062601 AAATTTACCCGCATGTATCGATACATTTA-ATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATATATCGATACA-TAAGATAGTGTATCGATACATCTGGGC
* *** *
3062653 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATATATCGATACATAAGATAGTGTATCGATACATCTGGGC
*
3062705 AAATTTGCCTGCATATATTGATACA-AAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATATATCGATACATAAGAT-AGTGTATCGATACA
3062750 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
51 4 0.05
52 81 0.95
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATATATCGATACATAAGATAGTGTATCGATACATCTGGGC
Found at i:3062756 original size:13 final size:13
Alignment explanation
Indices: 3062738--3062762 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3062728 CAAAGATCAG
3062738 TGTATCGATACAA
1 TGTATCGATACAA
3062751 TGTATCGATACA
1 TGTATCGATACA
3062763 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3062845 original size:13 final size:13
Alignment explanation
Indices: 3062827--3062851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3062817 CAAAAAAATA
3062827 TGTATCGATACAT
1 TGTATCGATACAT
3062840 TGTATCGATACA
1 TGTATCGATACA
3062852 AATCGTTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3068693 original size:16 final size:15
Alignment explanation
Indices: 3068652--3068690 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
3068642 TAGTATGTTA
*
3068652 TTTTAAAAGTAAATT
1 TTTTAAAAATAAATT
* *
3068667 TTTTATAAATAATTT
1 TTTTAAAAATAAATT
3068682 TTTTAAAAA
1 TTTTAAAAA
3068691 ATATTTAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (15 bp):
TTTTAAAAATAAATT
Found at i:3069273 original size:32 final size:33
Alignment explanation
Indices: 3069229--3069316 Score: 96
Period size: 32 Copynumber: 2.8 Consensus size: 33
3069219 CACATAAATT
3069229 TATTAAAATTTATATAAA-ATAA-ATCATTAAAC
1 TATTAAAATTTATATAAATATAATATC-TTAAAC
*
3069261 TATTAAATTTTATATAAATATAATATCTTAAA-
1 TATTAAAATTTATATAAATATAATATCTTAAAC
* * *
3069293 T-TTAATA-TAATATAAAAATAATAT
1 TATTAAAATTTATATAAATATAATAT
3069317 AAATATATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
30 15 0.31
31 4 0.08
32 18 0.37
33 9 0.18
34 3 0.06
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (33 bp):
TATTAAAATTTATATAAATATAATATCTTAAAC
Found at i:3071393 original size:2 final size:2
Alignment explanation
Indices: 3071380--3071421 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
3071370 CAAAAGATTT
* * *
3071380 TA TA TA TT TA TA TA TA TA TA TA TA TA AA T- TA TA GA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
3071421 T
1 T
3071422 CGTTATTTGG
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
TA
Found at i:3072146 original size:14 final size:13
Alignment explanation
Indices: 3072112--3072147 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 13
3072102 AATTTAATTT
3072112 AAAATAATTTAAA
1 AAAATAATTTAAA
3072125 AAATATAATTTAAA
1 AAA-ATAATTTAAA
3072139 ATAAATAAT
1 A-AAATAAT
3072148 CTAATGATGT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 3 0.14
14 16 0.76
15 2 0.10
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAATAATTTAAA
Found at i:3075941 original size:33 final size:33
Alignment explanation
Indices: 3075904--3075966 Score: 81
Period size: 33 Copynumber: 1.9 Consensus size: 33
3075894 CACGTGAAAA
* * *
3075904 TGTATAGATACATATTGCACTGTATTGATACAT
1 TGTATAGATACACATTGCAATGTATCGATACAT
* *
3075937 TGTATCGATACACCTTGCAATGTATCGATA
1 TGTATAGATACACATTGCAATGTATCGATA
3075967 TATTATGTGA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 25 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (33 bp):
TGTATAGATACACATTGCAATGTATCGATACAT
Found at i:3076043 original size:22 final size:21
Alignment explanation
Indices: 3076015--3076071 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
3076005 CTACCATTCA
3076015 AATGTATCGATACACATATAGG
1 AATGTATCGATACACATATA-G
* ** *
3076037 AATGTATCGATATATTTTTAG
1 AATGTATCGATACACATATAG
3076058 AATGTATCGATACA
1 AATGTATCGATACA
3076072 TCGAAAATTG
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 14 0.47
22 16 0.53
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACACATATAG
Found at i:3082153 original size:15 final size:15
Alignment explanation
Indices: 3082129--3082161 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
3082119 GATGTAATAA
3082129 AATTTATATCGATAC
1 AATTTATATCGATAC
*
3082144 AATTTGTATCGATAC
1 AATTTATATCGATAC
3082159 AAT
1 AAT
3082162 ACTAATGTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.39
Consensus pattern (15 bp):
AATTTATATCGATAC
Found at i:3083652 original size:21 final size:21
Alignment explanation
Indices: 3083626--3083665 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
3083616 TGACATACAT
*
3083626 GGGATGTTTACATTGATTCAA
1 GGGATGTTTACAGTGATTCAA
3083647 GGGATGTTTACAGTGATTC
1 GGGATGTTTACAGTGATTC
3083666 GAGATGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.25, C:0.10, G:0.28, T:0.38
Consensus pattern (21 bp):
GGGATGTTTACAGTGATTCAA
Found at i:3084556 original size:20 final size:20
Alignment explanation
Indices: 3084533--3084637 Score: 82
Period size: 20 Copynumber: 5.5 Consensus size: 20
3084523 ACATGAAAAC
*
3084533 GTATCAATACATATTGCAAT
1 GTATCGATACATATTGCAAT
**
3084553 GTATCGATACACCTTGCAAT
1 GTATCGATACATATTGCAAT
*
3084573 GCATCGATAC--A-T----T
1 GTATCGATACATATTGCAAT
*
3084586 GTATCGATACATCTTGCAAT
1 GTATCGATACATATTGCAAT
*
3084606 GTATCGATACATTATGTG-AAA
1 GTATCGATACA-TAT-TGCAAT
3084627 GTATCGATACA
1 GTATCGATACA
3084638 AGTCATTGGC
Statistics
Matches: 67, Mismatches: 9, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
13 10 0.15
16 1 0.01
17 1 0.01
20 38 0.57
21 15 0.22
22 2 0.03
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (20 bp):
GTATCGATACATATTGCAAT
Found at i:3084594 original size:33 final size:33
Alignment explanation
Indices: 3084552--3084618 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
3084542 CATATTGCAA
3084552 TGTATCGATACACCTTGCAATGCATCGATACAT
1 TGTATCGATACACCTTGCAATGCATCGATACAT
* *
3084585 TGTATCGATACATCTTGCAATGTATCGATACAT
1 TGTATCGATACACCTTGCAATGCATCGATACAT
3084618 T
1 T
3084619 ATGTGAAAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (33 bp):
TGTATCGATACACCTTGCAATGCATCGATACAT
Found at i:3084718 original size:21 final size:21
Alignment explanation
Indices: 3084684--3084742 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
3084674 ACACATATAG
* *
3084684 GAATGAATCGATACAATTCCA
1 GAATGTATCAATACAATTCCA
3084705 GAATGTATCAATAC-A-TCCA
1 GAATGTATCAATACAATTCCA
3084724 GAATTGTATCAATACAATT
1 GAA-TGTATCAATACAATT
3084743 AGCCTAACGA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
19 7 0.21
20 12 0.36
21 13 0.39
22 1 0.03
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (21 bp):
GAATGTATCAATACAATTCCA
Found at i:3084725 original size:19 final size:20
Alignment explanation
Indices: 3084701--3084739 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3084691 TCGATACAAT
3084701 TCCAGAA-TGTATCAATACA
1 TCCAGAATTGTATCAATACA
3084720 TCCAGAATTGTATCAATACA
1 TCCAGAATTGTATCAATACA
3084740 ATTAGCCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.37
20 12 0.63
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (20 bp):
TCCAGAATTGTATCAATACA
Found at i:3088370 original size:13 final size:13
Alignment explanation
Indices: 3088352--3088378 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3088342 ACATTATGCT
3088352 TTGTATCGATACA
1 TTGTATCGATACA
3088365 TTGTATCGATACA
1 TTGTATCGATACA
3088378 T
1 T
3088379 GTTAATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3088388 original size:19 final size:19
Alignment explanation
Indices: 3088364--3088419 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
3088354 GTATCGATAC
**
3088364 ATTGTATCGATACATGTTA
1 ATTGTATCGATACATGACA
3088383 ATTGTATCGATACATGGACA
1 ATTGTATCGATACAT-GACA
*
3088403 AGTGTATCGATACATGA
1 ATTGTATCGATACATGA
3088420 GATTGGAAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:3088410 original size:20 final size:20
Alignment explanation
Indices: 3088366--3088418 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
3088356 ATCGATACAT
** *
3088366 TGTATCGATACAT-GTTAAT
1 TGTATCGATACATGGACAAG
3088385 TGTATCGATACATGGACAAG
1 TGTATCGATACATGGACAAG
3088405 TGTATCGATACATG
1 TGTATCGATACATG
3088419 AGATTGGAAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGGACAAG
Found at i:3088490 original size:20 final size:20
Alignment explanation
Indices: 3088446--3088499 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
3088436 CTACCATTGT
3088446 TTGTATCGATACATGGCACA
1 TTGTATCGATACATGGCACA
*
3088466 ATGTATCGATACATGATG-A-A
1 TTGTATCGATACATG--GCACA
3088486 TTGTATCGATACAT
1 TTGTATCGATACAT
3088500 AGCTTATAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 28 0.93
21 1 0.03
22 1 0.03
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.33
Consensus pattern (20 bp):
TTGTATCGATACATGGCACA
Found at i:3094686 original size:13 final size:13
Alignment explanation
Indices: 3094668--3094707 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
3094658 ACAATATTCC
3094668 TTGTATCGATACA
1 TTGTATCGATACA
3094681 TTGTATCGATACA
1 TTGTATCGATACA
* *
3094694 CTGTATTGATACA
1 TTGTATCGATACA
3094707 T
1 T
3094708 AGGGTACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.40
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3096788 original size:86 final size:86
Alignment explanation
Indices: 3096637--3096806 Score: 304
Period size: 86 Copynumber: 2.0 Consensus size: 86
3096627 GGGGAGAAAA
*
3096637 TTTTTGAGAATTGCTTTGATTAAGGGGGAGAAAAACGAAAACTTATAAACTTTAATATCGAAACT
1 TTTTTGAGAATTGCTTTGATTAAGGGGGAGAAAAACGAAAACTTATAAACTTTAATACCGAAACT
3096702 TTTCTAATGCATTTCTTGAGG
66 TTTCTAATGCATTTCTTGAGG
* * *
3096723 TTTTTGAGAATTGCTTTGATTAAGGGGGAGAAAAATGAAAACTTATAAACTTTGATACCGGAACT
1 TTTTTGAGAATTGCTTTGATTAAGGGGGAGAAAAACGAAAACTTATAAACTTTAATACCGAAACT
3096788 TTTCTAATGCATTTCTTGA
66 TTTCTAATGCATTTCTTGA
3096807 AGTTGTGTAT
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 80 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (86 bp):
TTTTTGAGAATTGCTTTGATTAAGGGGGAGAAAAACGAAAACTTATAAACTTTAATACCGAAACT
TTTCTAATGCATTTCTTGAGG
Found at i:3097296 original size:13 final size:13
Alignment explanation
Indices: 3097278--3097304 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3097268 ACATTATGCT
3097278 TTGTATCGATACA
1 TTGTATCGATACA
3097291 TTGTATCGATACA
1 TTGTATCGATACA
3097304 T
1 T
3097305 GTTAATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3097314 original size:19 final size:19
Alignment explanation
Indices: 3097290--3097345 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
3097280 GTATCGATAC
**
3097290 ATTGTATCGATACATGTTA
1 ATTGTATCGATACATGACA
3097309 ATTGTATCGATACATGGACA
1 ATTGTATCGATACAT-GACA
*
3097329 AGTGTATCGATACATGA
1 ATTGTATCGATACATGA
3097346 GATTGACAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (19 bp):
ATTGTATCGATACATGACA
Found at i:3097336 original size:20 final size:20
Alignment explanation
Indices: 3097292--3097344 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
3097282 ATCGATACAT
** *
3097292 TGTATCGATACAT-GTTAAT
1 TGTATCGATACATGGACAAG
3097311 TGTATCGATACATGGACAAG
1 TGTATCGATACATGGACAAG
3097331 TGTATCGATACATG
1 TGTATCGATACATG
3097345 AGATTGACAG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATGGACAAG
Found at i:3097399 original size:20 final size:20
Alignment explanation
Indices: 3097373--3097426 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 20
3097363 CTACCACAGT
3097373 TTGTATCGATACATGGCAT-AA
1 TTGTATCGATACAT-G-ATGAA
3097394 -TGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
3097413 TTGTATCGATACAT
1 TTGTATCGATACAT
3097427 AGCTTGTAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
18 2 0.06
19 3 0.10
20 26 0.84
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:3100044 original size:126 final size:126
Alignment explanation
Indices: 3099819--3100071 Score: 488
Period size: 126 Copynumber: 2.0 Consensus size: 126
3099809 TATATAAGTG
3099819 AACACTGCATCATGCTTATGGTCTTTCTAGGATTTTGGTGAAATGACCAAATTATATTGATAAAT
1 AACACTGCATCATGCTTATGGTCTTTCTAGGATTTTGGTGAAATGACCAAATTATATTGATAAAT
3099884 TGGTTCCTAAAAGGTTTCTACAAGGTTATTATTAACTCTTTAACATTTGGATGATCATGAT
66 TGGTTCCTAAAAGGTTTCTACAAGGTTATTATTAACTCTTTAACATTTGGATGATCATGAT
* *
3099945 AACACTGCATCATGCTTATGGTCTTTCTAGGATTTTGGTGAAATGATCAAATTATATTGATAAGT
1 AACACTGCATCATGCTTATGGTCTTTCTAGGATTTTGGTGAAATGACCAAATTATATTGATAAAT
3100010 TGGTTCCTAAAAGGTTTCTACAAGGTTATTATTAACTCTTTAACATTTGGATGATCATGAT
66 TGGTTCCTAAAAGGTTTCTACAAGGTTATTATTAACTCTTTAACATTTGGATGATCATGAT
3100071 A
1 A
3100072 GGTTACCAGA
Statistics
Matches: 125, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
126 125 1.00
ACGTcount: A:0.31, C:0.13, G:0.17, T:0.39
Consensus pattern (126 bp):
AACACTGCATCATGCTTATGGTCTTTCTAGGATTTTGGTGAAATGACCAAATTATATTGATAAAT
TGGTTCCTAAAAGGTTTCTACAAGGTTATTATTAACTCTTTAACATTTGGATGATCATGAT
Found at i:3100493 original size:28 final size:28
Alignment explanation
Indices: 3100453--3100506 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
3100443 TAGATATTGT
*
3100453 TAAGATAATATGGATAAGTTTGTCTTGC
1 TAAGATAATATGGATAAGGTTGTCTTGC
3100481 TAAGATAATATGGATAAGGTTGTCTT
1 TAAGATAATATGGATAAGGTTGTCTT
3100507 AACGAAACAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (28 bp):
TAAGATAATATGGATAAGGTTGTCTTGC
Found at i:3100633 original size:82 final size:82
Alignment explanation
Indices: 3100577--3100773 Score: 349
Period size: 82 Copynumber: 2.4 Consensus size: 82
3100567 AGACAATGTC
* *
3100577 TAAAGTAGACATGTCTTAAGATAAGTTGTCTTGATGTTTTAATAAGACAATATGGATAAGGTTGT
1 TAAAATAGACATTTCTTAAGATAAGTTGTCTTGATGTTTTAATAAGACAATATGGATAAGGTTGT
3100642 ATTAATAAAACAATATT
66 ATTAATAAAACAATATT
*
3100659 TAAAATAGACATTTCTTAAGATAAGTTGTCTTAATGTTTTAATAAGACAATATGGATAAGGTTGT
1 TAAAATAGACATTTCTTAAGATAAGTTGTCTTGATGTTTTAATAAGACAATATGGATAAGGTTGT
*
3100724 ATAAATAAAACAATATT
66 ATTAATAAAACAATATT
*
3100741 TAAAATAGACATTTCTTGAGATAAGTTGTCTTG
1 TAAAATAGACATTTCTTAAGATAAGTTGTCTTG
3100774 GCCAAACCTG
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 109 1.00
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.37
Consensus pattern (82 bp):
TAAAATAGACATTTCTTAAGATAAGTTGTCTTGATGTTTTAATAAGACAATATGGATAAGGTTGT
ATTAATAAAACAATATT
Found at i:3102554 original size:13 final size:13
Alignment explanation
Indices: 3102525--3102587 Score: 66
Period size: 13 Copynumber: 5.3 Consensus size: 13
3102515 GCAAGCCCAG
*
3102525 AATGTATCGATAT
1 AATGTATCGATAC
*
3102538 AATGTATCGATGC
1 AATGTATCGATAC
3102551 AATG-A---AT--
1 AATGTATCGATAC
3102558 AATGTATCGATAC
1 AATGTATCGATAC
3102571 AATGTATCGATAC
1 AATGTATCGATAC
3102584 AATG
1 AATG
3102588 AACAATGTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
7 4 0.10
8 1 0.02
9 2 0.05
11 2 0.05
12 1 0.02
13 32 0.76
ACGTcount: A:0.40, C:0.11, G:0.17, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:3102561 original size:20 final size:20
Alignment explanation
Indices: 3102536--3102574 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
3102526 ATGTATCGAT
*
3102536 ATAATGTATCGATGCAATGA
1 ATAATGTATCGATACAATGA
3102556 ATAATGTATCGATACAATG
1 ATAATGTATCGATACAATG
3102575 TATCGATACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (20 bp):
ATAATGTATCGATACAATGA
Found at i:3102567 original size:33 final size:33
Alignment explanation
Indices: 3102525--3102601 Score: 127
Period size: 33 Copynumber: 2.3 Consensus size: 33
3102515 GCAAGCCCAG
* * *
3102525 AATGTATCGATATAATGTATCGATGCAATGAAT
1 AATGTATCGATACAATGTATCGATACAATGAAC
3102558 AATGTATCGATACAATGTATCGATACAATGAAC
1 AATGTATCGATACAATGTATCGATACAATGAAC
3102591 AATGTATCGAT
1 AATGTATCGAT
3102602 CCAAATTGTG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (33 bp):
AATGTATCGATACAATGTATCGATACAATGAAC
Found at i:3103353 original size:45 final size:44
Alignment explanation
Indices: 3103304--3103470 Score: 125
Period size: 46 Copynumber: 3.9 Consensus size: 44
3103294 TTTCGAGGGT
3103304 AAAGGAAAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAAGACAA
1 AAAGGAAAAAAGG-AAATGAAATGCGTCCTGCTCTTTGAAGACAA
* * * *
3103349 AAAGG--AAAA-TAAA-G---TGCATCGTGCTCTTTGAGGACAA
1 AAAGGAAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAAGACAA
* * *
3103386 AAGGGAAAATAAGGAAATGAAGTGCGTCCTACTCTTT-AAGGACAGA
1 AAAGGAAAA-AAGGAAATGAAATGCGTCCTGCTCTTTGAA-GACA-A
** * * *
3103432 AGGGGAAAAAAAGGAAATGGAACGTGTCCTGCTCTTTGA
1 AAAGG-AAAAAAGGAAATGAAATGCGTCCTGCTCTTTGA
3103471 GGGCAAAGGA
Statistics
Matches: 94, Mismatches: 16, Indels: 22
0.71 0.12 0.17
Matches are distributed among these distances:
37 24 0.26
39 2 0.02
40 3 0.03
41 6 0.06
42 1 0.01
43 4 0.04
44 1 0.01
45 21 0.22
46 27 0.29
47 5 0.05
ACGTcount: A:0.41, C:0.13, G:0.26, T:0.20
Consensus pattern (44 bp):
AAAGGAAAAAAGGAAATGAAATGCGTCCTGCTCTTTGAAGACAA
Found at i:3103374 original size:37 final size:36
Alignment explanation
Indices: 3103310--3103397 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 36
3103300 GGGTAAAGGA
*
3103310 AAAAAGGAAAATGAAATGCGTCCTGCTCTTTGAAGAC
1 AAAAAGGAAAAT-AAATGCATCCTGCTCTTTGAAGAC
* *
3103347 AAAAAGGAAAATAAAGTGCATCGTGCTCTTTGAGGAC
1 AAAAAGGAAAATAAA-TGCATCCTGCTCTTTGAAGAC
*
3103384 AAAAGGGAAAATAA
1 AAAAAGGAAAATAA
3103398 GGAAATGAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 3 0.07
37 43 0.93
ACGTcount: A:0.45, C:0.12, G:0.23, T:0.19
Consensus pattern (36 bp):
AAAAAGGAAAATAAATGCATCCTGCTCTTTGAAGAC
Found at i:3103461 original size:46 final size:44
Alignment explanation
Indices: 3103372--3103485 Score: 131
Period size: 46 Copynumber: 2.5 Consensus size: 44
3103362 GTGCATCGTG
* *
3103372 CTCTTTGAGGACAAAAGGGAAAATAAGGAAATGAAGTGCGTCCTA
1 CTCTTTGAGGACAAAGGGGAAAAAAAGGAAATGAAGT-CGTCCTA
* *
3103417 CTCTTTAAGGACAGAAGGGGAAAAAAAGGAAATGGAACGT-GTCCTG
1 CTCTTTGAGGACA-AAGGGGAAAAAAAGGAAAT-GAA-GTCGTCCTA
* *
3103463 CTCTTTGAGGGCAAAGGAGAAAA
1 CTCTTTGAGGACAAAGGGGAAAA
3103486 GGAAAAGGCG
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
45 21 0.36
46 33 0.56
47 3 0.05
48 2 0.03
ACGTcount: A:0.39, C:0.13, G:0.29, T:0.18
Consensus pattern (44 bp):
CTCTTTGAGGACAAAGGGGAAAAAAAGGAAATGAAGTCGTCCTA
Found at i:3103749 original size:62 final size:61
Alignment explanation
Indices: 3103482--3104012 Score: 717
Period size: 62 Copynumber: 8.6 Consensus size: 61
3103472 GGCAAAGGAG
* * * * **
3103482 AAAAGGAAAAGGCGTCATGCTCTATGAGGACTAAAAAGTGCCACCAACTCGTGTTTGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
*
3103543 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
3103604 AAAAGGAAAAGGCATCCTGCTTTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
3103664 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGCAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTT
* *
3103726 AAAAGGAGAAA-GCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGA-AAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
3103787 AAAAGGAAAAGGCATCCTGCTTTTTGAGGACTAGAAAAATGCCACCAACTTATGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTT
* * *
3103849 AAAAGAAAAAGGCGTCCTGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
3103910 GAAAAGAAAAAGGTGTCTTGCTTTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
1 -AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTT
* * * *
3103972 AAAAAGAAAAAAAGGCTTCCTACTCTTTGAGGACTAAAAAG
1 -AAAAG--GAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAG
3104013 GGCTAAAAAA
Statistics
Matches: 426, Mismatches: 34, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
60 60 0.14
61 166 0.39
62 170 0.40
63 3 0.01
64 24 0.06
65 3 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (61 bp):
AAAAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:3103813 original size:123 final size:123
Alignment explanation
Indices: 3103482--3104012 Score: 705
Period size: 123 Copynumber: 4.3 Consensus size: 123
3103472 GGCAAAGGAG
* * * * * * **
3103482 AAAAGG-AAAAGGCGTCATGCTCTATGAGGACTAAAAAGTGCCACCAACTCGTGTTTGCTTTAAA
1 AAAAGGAAAAAGGCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
*
3103546 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTT
66 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
3103604 AAAAGG-AAAAGGCATCCTGCTTTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTTAAA
1 AAAAGGAAAAAGGCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
3103667 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAGCAAAGTGCCACCAACTTGTGTGGGCTTT
66 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTT
*
3103726 AAAAGGAGAAA-GCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
1 AAAAGGAAAAAGGCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
* * * *
3103790 AGGAAAAGGCATCCTGCTTTTTGAGGACTAGAAAAATGCCACCAACTTATGTGGGCTTT
66 AGGAAAAGGCGTCCTGCTCTTTGAGGACTAG-AAAGTGCCACCAACTTGTGTGGGCTTT
* * * *
3103849 AAAA-GAAAAAGGCGTCCTGCTTTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTGAA
1 AAAAGGAAAAAGGCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-AA
* * * *
3103913 AAGAAAAAGGTGTCTTGCTTTTTGAGGACTA-AAAGGTGCCACCAACTTGTGTGGGCTTT
65 AAGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTT
* * *
3103972 AAAAAGAAAAAAAGGCTTCCTACTCTTTGAGGACTAAAAAG
1 -AAAAG-GAAAAAGGCATCCTACTCTTTGAGGACTAGAAAG
3104013 GGCTAAAAAA
Statistics
Matches: 362, Mismatches: 38, Indels: 14
0.87 0.09 0.03
Matches are distributed among these distances:
121 56 0.15
122 87 0.24
123 158 0.44
124 33 0.09
126 28 0.08
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (123 bp):
AAAAGGAAAAAGGCATCCTACTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTAAA
AGGAAAAGGCGTCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT
Found at i:3110954 original size:20 final size:20
Alignment explanation
Indices: 3110928--3111001 Score: 89
Period size: 20 Copynumber: 3.7 Consensus size: 20
3110918 CGTTGGACTC
3110928 AATGTATCGATACATTTATG
1 AATGTATCGATACATTTATG
* *
3110948 GATGTATCGATACA-TTCTG
1 AATGTATCGATACATTTATG
*
3110967 AATTGTATCGATACATTTA-C
1 AA-TGTATCGATACATTTATG
3110987 ATATGTATCGATACA
1 A-ATGTATCGATACA
3111002 AATGAGGGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
19 5 0.11
20 38 0.83
21 3 0.07
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (20 bp):
AATGTATCGATACATTTATG
Found at i:3111085 original size:21 final size:21
Alignment explanation
Indices: 3111040--3111097 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
3111030 CTGCCAAGAA
*
3111040 AATGTATCGATACA-ATACAT
1 AATGTATCGATACATTTACAT
*
3111060 GATGTATCGATACATTTACAT
1 AATGTATCGATACATTTACAT
*
3111081 AATGTATCGATATATTT
1 AATGTATCGATACATTT
3111098 TCACTTGTAT
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
20 13 0.39
21 20 0.61
ACGTcount: A:0.38, C:0.12, G:0.12, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTTACAT
Found at i:3111139 original size:112 final size:112
Alignment explanation
Indices: 3110928--3111186 Score: 289
Period size: 113 Copynumber: 2.3 Consensus size: 112
3110918 CGTTGGACTC
**
3110928 AATGTATCGATACATTTATGGATGTATCGATACA-TTCTGAATTGTATCGATACATTTACATATG
1 AATGTATCGATACATACAT-GATGTATCGATACATTTCTGAATTGTATCGATACATTTACATATG
* *
3110992 TATCGATACAAATGAGGGTTTCAAAATTACCGTAGCTACTGCCAAGAA
65 TATCGATACAAATAAGGGTTTCAAAATTACCGTAGCTACTGCCAACAA
* *
3111040 AATGTATCGATACAATACATGATGTATCGATACATTTACAT-AA-TGTATCGATATATTTTCACT
1 AATGTATCGATAC-ATACATGATGTATCGATACATTT-C-TGAATTGTATCGATACATTTACA-T
* * * ** *
3111103 -TGTATCGATAGAAATAAGGGTTTTAACATT-TTGTAGCTACTGCCAACCA
62 ATGTATCGATACAAATAAGGGTTTCAAAATTACCGTAGCTACTGCCAACAA
*
3111152 TA-GTATCGATACATACA-GTATTGTATCGATACATT
1 AATGTATCGATACATACATG-A-TGTATCGATACATT
3111187 CAGTATTTTT
Statistics
Matches: 127, Mismatches: 13, Indels: 15
0.82 0.08 0.10
Matches are distributed among these distances:
109 1 0.01
110 6 0.05
111 24 0.19
112 43 0.34
113 48 0.38
114 4 0.03
115 1 0.01
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (112 bp):
AATGTATCGATACATACATGATGTATCGATACATTTCTGAATTGTATCGATACATTTACATATGT
ATCGATACAAATAAGGGTTTCAAAATTACCGTAGCTACTGCCAACAA
Found at i:3111179 original size:20 final size:20
Alignment explanation
Indices: 3111154--3111193 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
3111144 GCCAACCATA
3111154 GTATCGATACATACAGTATT
1 GTATCGATACATACAGTATT
*
3111174 GTATCGATACATTCAGTATT
1 GTATCGATACATACAGTATT
3111194 TTTACTCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.38
Consensus pattern (20 bp):
GTATCGATACATACAGTATT
Found at i:3114095 original size:79 final size:78
Alignment explanation
Indices: 3113994--3114456 Score: 500
Period size: 79 Copynumber: 5.9 Consensus size: 78
3113984 TACTTTCGAG
* * ** *
3113994 GGGATACTCCAACTCCGGTTTTA-TTTCTAAAACACTGATTTTTCATAATCGGGGATACTCCAAT
1 GGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCATAATCGGGGATACTCCAAC
**
3114058 CTTGTTATTTCTGAA
65 CCCGTTATTT-TGAA
* * *
3114073 GGGATACTCCAACCCCAATTTTA-TTTCTAAAACACCAATTTTTCATTATCGAGGATACTCCAAC
1 GGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCATAATCGGGGATACTCCAAC
* *
3114137 CCTGTTATTTTTAA
65 CCCGTTATTTTGAA
* * * * * * * *
3114151 GGGGATGCTCTAATCCCGATTTTATTTTCAAAATATCGATTTTCCACAATCGGGGATACTCCAAC
1 -GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
* *
3114216 CCCATTATTTTCAA
65 CCCGTTATTTTGAA
*
3114230 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
1 -GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
*
3114295 CTCGTTATTTTCG-A
65 CCCGTTATTTT-GAA
* * * * * * *
3114309 GGAGATGCTCTAACCTCGGTTTTATTTTCAAAACATCGATTTTTCATAATCGAGGATACTCCAAC
1 GG-GATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAAC
*
3114374 CCCGTTATTTTCGAG
65 CCCGTTATTTT-GAA
* * ** *
3114389 GGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACC
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACC
3114454 CCG
66 CCG
3114457 ATTTTATTTC
Statistics
Matches: 323, Mismatches: 56, Indels: 10
0.83 0.14 0.03
Matches are distributed among these distances:
78 5 0.02
79 312 0.97
80 6 0.02
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (78 bp):
GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACC
CCGTTATTTTGAA
Found at i:3114287 original size:158 final size:159
Alignment explanation
Indices: 3114012--3114454 Score: 585
Period size: 158 Copynumber: 2.8 Consensus size: 159
3114002 CCAACTCCGG
* ** *
3114012 TTTTA-TTTCTAAAACA-CTGATTTTTCATAATCGGGGATACTCCAATCTTGTTATTTCTGAA-G
1 TTTTATTTTC-AAAACATC-GATTTTTCATAATCGGGGATACTCCAACCCCGTTATTT-TCAAGG
* * *
3114074 GGATACTCCAACCCCAATTTTA-TTTCTAAAACACCAATTTTTCATTATCGAGGATACTCCAACC
63 GGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCATAATCGGGGATACTCCAACC
* *
3114138 CT-GTTATTTTTAAGGGGATGCTCTAATCC-CGA
127 CTCGTTATTTTCAAGGAGATGCTCTAA-CCTCGA
* * * *
3114170 TTTTATTTTCAAAATATCGATTTTCCACAATCGGGGATACTCCAACCCCATTATTTTCAAGGGGA
1 TTTTATTTTCAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGA
*
3114235 TACTCCAACCCTGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAA-CCTCG
66 TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCTCG
* *
3114299 TTATTTTCGAGGAGATGCTCTAACCTCGG
131 TTATTTTCAAGGAGATGCTCTAACCTCGA
* *
3114328 TTTTATTTTCAAAACATCGATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTTCAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGA
* * ** *
3114393 TACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACCC
66 TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCC
3114455 CGATTTTATT
Statistics
Matches: 250, Mismatches: 28, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
157 8 0.03
158 231 0.92
159 11 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (159 bp):
TTTTATTTTCAAAACATCGATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGA
TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCATAATCGGGGATACTCCAACCCTCG
TTATTTTCAAGGAGATGCTCTAACCTCGA
Found at i:3114413 original size:237 final size:237
Alignment explanation
Indices: 3113987--3114455 Score: 624
Period size: 237 Copynumber: 2.0 Consensus size: 237
3113977 ATGTTTTTAC
* * **
3113987 TTTCGAGGGGATACTCCAACTCCGGTTTTATTTCTAAAACACTGATTTTTCATAATCGGGGATAC
1 TTTCAAGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATAC
* *
3114052 TCCAATCTTGTTATTTCTGAAGGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTTC
66 TCCAACCTCGTTATTTCTGAAGGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTTC
* * * * * *
3114117 ATTATCGAGGATACTCCAACCCTGTTATTTTTAAGGGGATGCTCTAATCCCGATTTTATTTTCAA
131 ATAATCGAGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTTCAA
* * *
3114182 AATATCGATTTTCCACAATCGGGGATACTCCAACCCCATTAT
196 AACACCAATTTTCCACAATCGGGGATACTCCAACCCCATTAT
3114224 TTTCAAGGGGATACTCCAAC-CCTGATTTTATTT-TCAAAACACCAATTTTTCATAATCGGGGAT
1 TTTCAAGGGGATACTCCAACTCC-GATTTTATTTCT-AAAACACCAATTTTTCATAATCGGGGAT
* * * ** * *
3114287 ACTCCAACCTCGTTATTT-TCG-AGGAGATGCTCTAACCTCGGTTTTATTT-TCAAAACATCGAT
64 ACTCCAACCTCGTTATTTCT-GAAGG-GATACTCCAACCCCAATTTTATTTCT-AAAACACCAAT
* *
3114349 TTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATT
126 TTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTATT
* *
3114414 TTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACCCC
191 TTCAAAACACCAATTTTCCACAATCGGGGATACTCCAACCCC
3114456 GATTTTATTT
Statistics
Matches: 201, Mismatches: 26, Indels: 10
0.85 0.11 0.04
Matches are distributed among these distances:
236 8 0.04
237 193 0.96
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.34
Consensus pattern (237 bp):
TTTCAAGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCAATTTTTCATAATCGGGGATAC
TCCAACCTCGTTATTTCTGAAGGGATACTCCAACCCCAATTTTATTTCTAAAACACCAATTTTTC
ATAATCGAGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCGATTTTATTTTCAA
AACACCAATTTTCCACAATCGGGGATACTCCAACCCCATTAT
Found at i:3114453 original size:51 final size:51
Alignment explanation
Indices: 3114388--3114517 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
3114378 TTATTTTCGA
* * * *
3114388 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACCATC
1 GGGGATACTTCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
* * *
3114439 GGGGATACTTCAACCCCGATTTTATTTCCAAAACATCGATTTTTCACAATC
1 GGGGATACTTCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
*
3114490 GAGGATAC-TCTAACCCC-A--TTATTTCCAA
1 GGGGATACTTC-AACCCCGATTTTATTTCCAA
3114518 GGGGATACTC
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
48 10 0.14
50 3 0.04
51 57 0.81
ACGTcount: A:0.29, C:0.28, G:0.12, T:0.31
Consensus pattern (51 bp):
GGGGATACTTCAACCCCGATTTTATTTCCAAAACACCAATTTTCCACAATC
Found at i:3114462 original size:130 final size:130
Alignment explanation
Indices: 3114328--3114577 Score: 383
Period size: 130 Copynumber: 1.9 Consensus size: 130
3114318 CTAACCTCGG
* * * * *
3114328 TTTTATTTTCAAAACATCGATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCAAGGGGA
*
3114393 TACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACCCCGA
66 TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACCCCGA
*
3114458 TTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCTAACCCCATTATTTCCAAGGGGA
1 TTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCAAGGGGA
* * *** *
3114523 TACTCTAACCCCGATTTTATTTTCAAAGCATTGATTTTCCACCATTGGGGATACT
66 TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACT
3114578 CAAACCTGGT
Statistics
Matches: 107, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
130 107 1.00
ACGTcount: A:0.28, C:0.25, G:0.13, T:0.34
Consensus pattern (130 bp):
TTTTATTTCCAAAACATCGATTTTTCACAATCGAGGATACTCCAACCCCATTATTTCCAAGGGGA
TACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCCACCATCGGGGATACTTCAACCCCGA
Found at i:3118108 original size:20 final size:20
Alignment explanation
Indices: 3118082--3118136 Score: 76
Period size: 19 Copynumber: 2.8 Consensus size: 20
3118072 CCGCCAATTT
*
3118082 CATGTATTGATACAATTGAG
1 CATGTATCGATACAATTGAG
*
3118102 TATGTATCGATACAA-TGAG
1 CATGTATCGATACAATTGAG
*
3118121 CATATATCGATACAAT
1 CATGTATCGATACAAT
3118137 GTATCGATAC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:3119559 original size:20 final size:20
Alignment explanation
Indices: 3119536--3119608 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3119526 ACAACTCAAA
3119536 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3119556 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3119577 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3119597 GTATCGATACAT
1 GTATCGATACAT
3119609 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3119587 original size:41 final size:42
Alignment explanation
Indices: 3119536--3119630 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
3119526 ACAACTCAAA
*
3119536 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
3119577 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
3119619 GTATCGATACAT
1 GTATCGATACAT
3119631 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:3119687 original size:13 final size:13
Alignment explanation
Indices: 3119669--3119694 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3119659 TACAGCAAGT
3119669 ATGTATCGATACA
1 ATGTATCGATACA
3119682 ATGTATCGATACA
1 ATGTATCGATACA
3119695 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3123779 original size:15 final size:15
Alignment explanation
Indices: 3123759--3123797 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
3123749 TAAAAATGTC
*
3123759 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
3123774 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
*
3123789 CCAAATGAA
1 CAAAATGAA
3123798 ATTGATGTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.51, C:0.15, G:0.21, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:3125883 original size:20 final size:21
Alignment explanation
Indices: 3125805--3125882 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 21
3125795 ATGTCCAAAA
*
3125805 TGTATCGATACATGTTTTTG-
1 TGTATCGATACATCTTTTTGT
** *
3125825 TGTATCGATACATCTGGAAATTCT
1 TGTATCGATACATCT---TTTTGT
3125849 ATGTATCGATACAT-TTTTTGT
1 -TGTATCGATACATCTTTTTGT
3125870 TGTATCGATACAT
1 TGTATCGATACAT
3125883 TGTATCGATA
Statistics
Matches: 46, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
20 27 0.59
21 3 0.07
23 2 0.04
24 1 0.02
25 13 0.28
ACGTcount: A:0.26, C:0.13, G:0.17, T:0.45
Consensus pattern (21 bp):
TGTATCGATACATCTTTTTGT
Found at i:3125887 original size:13 final size:13
Alignment explanation
Indices: 3125869--3125907 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3125859 ACATTTTTTG
3125869 TTGTATCGATACA
1 TTGTATCGATACA
3125882 TTGTATCGATACA
1 TTGTATCGATACA
*
3125895 CTGTATCGATACA
1 TTGTATCGATACA
3125908 GGGTGATTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:3127754 original size:18 final size:16
Alignment explanation
Indices: 3127713--3127758 Score: 74
Period size: 16 Copynumber: 2.8 Consensus size: 16
3127703 AATTACTTGA
3127713 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
3127729 TTAAGGGGGAGATTTT
1 TTAAGGGGGAGATTTT
3127745 TTAAACGGGGGAGA
1 TT-AA-GGGGGAGA
3127759 CAAAGGAGAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
16 18 0.64
17 2 0.07
18 8 0.29
ACGTcount: A:0.28, C:0.02, G:0.39, T:0.30
Consensus pattern (16 bp):
TTAAGGGGGAGATTTT
Found at i:3128388 original size:20 final size:20
Alignment explanation
Indices: 3128365--3128437 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
3128355 ACAACTCAAA
3128365 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
3128385 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
3128406 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
3128426 GTATCGATACAT
1 GTATCGATACAT
3128438 AAAAAAAGAT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:3128416 original size:41 final size:42
Alignment explanation
Indices: 3128365--3128459 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 42
3128355 ACAACTCAAA
*
3128365 GTATCGATACATGTTGCAATGTATCGATACAT-GAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
3128406 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
3128448 GTATCGATACAT
1 GTATCGATACAT
3128460 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
41 32 0.62
42 20 0.38
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (42 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAAGAT
Found at i:3128516 original size:13 final size:13
Alignment explanation
Indices: 3128498--3128523 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3128488 TACAGCAAGT
3128498 ATGTATCGATACA
1 ATGTATCGATACA
3128511 ATGTATCGATACA
1 ATGTATCGATACA
3128524 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3131808 original size:52 final size:52
Alignment explanation
Indices: 3131730--3131879 Score: 250
Period size: 52 Copynumber: 2.9 Consensus size: 52
3131720 CGAAATATGA
*
3131730 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
3131782 AAATTTGCCTGCATGTATCGATACATTTTAA-AATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTTAATAATGTATCGATACATCTGGGC
*
3131834 AAA-TTGCCTGCATGTATCGATACATTTGAGTAATGTATCGATACAT
1 AAATTTGCCTGCATGTATCGATACATTT-AATAATGTATCGATACAT
3131880 TTTTTGGCAG
Statistics
Matches: 93, Mismatches: 2, Indels: 6
0.92 0.02 0.06
Matches are distributed among these distances:
50 3 0.03
51 22 0.24
52 63 0.68
53 5 0.05
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGC
Found at i:3131935 original size:33 final size:33
Alignment explanation
Indices: 3131898--3131964 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3131888 AGTAGCTTAA
3131898 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
3131931 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
3131964 A
1 A
3131965 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:3131938 original size:13 final size:13
Alignment explanation
Indices: 3131920--3131944 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3131910 CAAAAAAATA
3131920 TGTATCGATACAT
1 TGTATCGATACAT
3131933 TGTATCGATACA
1 TGTATCGATACA
3131945 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3132913 original size:175 final size:170
Alignment explanation
Indices: 3132545--3132925 Score: 439
Period size: 169 Copynumber: 2.2 Consensus size: 170
3132535 CCACTGTGCA
* * * *
3132545 GATTCAAGGCCTGCCACACTGGACTTAAAGATGATGAGGATGAAGAGCGATAAAAGGACCAATAC
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAAAGGACCAATAC
3132610 GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
66 GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
* * * *
3132675 CTAGCGATATTGGACTTAAAGATAAAGGTGCCAATGTGCT
131 CCAGCGAGATTGAACTTAAAGATAAAGGTGCCAATATGCT
* * * *
3132715 GATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGATGA-GAAAAGTGATAAAGATG-CCAATA
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAA-AGGACCAATA
* * * * **
3132778 TGTTGATTCACGGCCAACGATATTGGGCTT-AAAGATGATGAAAAAGGATGTCAATGTGCTGAT-
65 CGTTGATTCACGGCCAACGATATTGGG-TTCAAAGATGA-GAAAAAGGA--TAAAAGAGCCAATA
* *
3132841 T-CAAGGCCAGCTAGATTGAACTTAAAGATGGAAAAGGTGCCGATATGCT
126 TGC--GGCCAGCGAGATTGAACTTAAAGAT---AAAGGTGCCAATATGCT
* *
3132890 GATTCAAGGCCAGCTATATTGGACTTAAAGATGAAG
1 GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAG
3132926 GTGCCAATGT
Statistics
Matches: 179, Mismatches: 22, Indels: 15
0.83 0.10 0.07
Matches are distributed among these distances:
169 51 0.28
170 49 0.27
171 1 0.01
172 29 0.16
175 49 0.27
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (170 bp):
GATTCAAGGCCAGCCACATTGGACTTAAAGATGAAGAGGATGAAAAGCGATAAAAGGACCAATAC
GTTGATTCACGGCCAACGATATTGGGTTCAAAGATGAGAAAAAGGATAAAAGAGCCAATATGCGG
CCAGCGAGATTGAACTTAAAGATAAAGGTGCCAATATGCT
Found at i:3132946 original size:49 final size:49
Alignment explanation
Indices: 3132770--3133411 Score: 784
Period size: 49 Copynumber: 12.8 Consensus size: 49
3132760 GTGATAAAGA
* * * * *
3132770 TGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A-GATG---AAGG
* * * *
3132825 ATGTCAATGTGCTGATTCAAGGCCAGCTAGATTGAACTTAAAGATGGAAAAGG
1 -TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
*
3132878 TGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * * *
3132927 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
3132976 TGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTGCAA-G
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AAGG
* * * * *
3133024 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
3133073 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAATGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * * *
3133122 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
3133171 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* * *
3133220 TGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
*
3133272 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGAAAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-G--AAGG
*
3133324 TGCCAATAGGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
* *
3133373 TGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTTA
1 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
3133412 GAAGGGTTGC
Statistics
Matches: 513, Mismatches: 66, Indels: 21
0.86 0.11 0.04
Matches are distributed among these distances:
48 41 0.08
49 294 0.57
50 1 0.00
51 2 0.00
52 133 0.26
53 9 0.02
54 2 0.00
55 2 0.00
56 29 0.06
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (49 bp):
TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGG
Found at i:3133005 original size:98 final size:99
Alignment explanation
Indices: 3132762--3133416 Score: 917
Period size: 98 Copynumber: 6.5 Consensus size: 99
3132752 TGAGAAAAGT
* * * * * *
3132762 GATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGATGATGAAAAAGGAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG--G-TG--AAAGG-T
* * * *
3132827 GTCAATGTGCTGATTCAAGGCCAGCTAGATTGAACTTAAA
60 GCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
* *
3132867 GATGGAAAAGGTGCCGATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATG-AAGGTGCC
1 GAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAAGGTGCC
3132931 AATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
63 AATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
* *
3132968 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTGCAA-GTGCCAAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAAGGTGCCAAT
3133031 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
66 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
* * *
3133065 GATAAAAGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGGCTTAATGGTG-AAGGTGCCAAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAAGGTGCCAAT
3133129 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
66 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
*
3133163 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG-AAGGTGCCAAT
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAAGGTGCCAAT
3133227 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
66 GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
3133261 GATGGAAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGGAAAAGGTG
1 GAT---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGT-G-AAAGGTG
* *
3133326 CCAATAG-GCTGATTCAAGGCCAGCTATATTGGACTTAAA
61 CCAAT-GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
* * *
3133365 GATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATATTGGGCTTAGAAGG
1 GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA-AAGG
3133417 GTTGCCACCG
Statistics
Matches: 511, Mismatches: 25, Indels: 31
0.90 0.04 0.05
Matches are distributed among these distances:
97 93 0.18
98 190 0.37
101 129 0.25
102 9 0.02
104 44 0.09
105 6 0.01
108 40 0.08
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (99 bp):
GATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGAAAGGTGCCAAT
GTGCTGAGTCAAGGCCAGCTACATTGGACTTAAA
Found at i:3133164 original size:195 final size:197
Alignment explanation
Indices: 3132829--3133403 Score: 951
Period size: 195 Copynumber: 2.9 Consensus size: 197
3132819 AAAAGGATGT
* * * *
3132829 CAATGTGCTGATTCAAGGCCAGCTAGATTGAACTTAAAGATGGAAAAGGTGCCGATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAAAGGTGCCAATATGCTGATT
*
3132894 CAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
65 CAAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATT
3132959 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATGGACTTAATGGTGCAA-
130 GGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATGGACTTAATGGTG-AAG
3133023 GTGC
194 GTGC
3133027 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-AAAA-GTGCCAATATGCTGATTC
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
* *
3133090 AAGGCCAGCTATATTGGGCTTAATGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
66 AAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
3133155 GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAAGG
131 GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATA-TGGACTTAATGGTGAAGG
3133220 TGC
195 TGC
3133223 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGAT-GAAAAGGTGCCAATATGCTGATT
*
3133288 CAAGGCCAGCTATATTGGACTTAAAGGTGGAAAAGGTGCCAATAG-GCTGATTCAAGGCCAGCTA
65 CAAGGCCAGCTATATTGGACTTAAAGGT-G--AAGGTGCCAAT-GTGCTGAGTCAAGGCCAGCTA
* * *
3133352 TATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAGGGCCAGCTATAT
126 CATTGGACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATAT
3133404 TGGGCTTAGA
Statistics
Matches: 355, Mismatches: 13, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
195 127 0.36
196 63 0.18
198 42 0.12
199 43 0.12
200 1 0.00
201 1 0.00
202 77 0.22
203 1 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.25
Consensus pattern (197 bp):
CAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCTATATTGGACTTAAAGGTGAAGGTGCCAATGTGCTGAGTCAAGGCCAGCTACATTG
GACTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATGGACTTAATGGTGAAGGT
GC
Found at i:3133455 original size:33 final size:33
Alignment explanation
Indices: 3133411--3133648 Score: 349
Period size: 33 Copynumber: 7.2 Consensus size: 33
3133401 TATTGGGCTT
3133411 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
3133444 AGAATGGTTGCCACCAACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
3133476 GGAAGGGTTGCCACTGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
3133508 GGAAGGGATTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
3133542 AGGAA-GGTTGCCACCGACTTGTGTGGGCTTTAG
1 A-GAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
3133575 AGAAGGGTTTGCCGCCGACTTGTGTGGGCTTTAG
1 AGAAGGG-TTGCCACCGACTTGTGTGGGCTTTAG
*
3133609 AGAAGGTTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
3133642 A-AAGGGT
1 AGAAGGGT
3133649 GAAAGATGCC
Statistics
Matches: 186, Mismatches: 14, Indels: 11
0.88 0.07 0.05
Matches are distributed among these distances:
32 44 0.24
33 105 0.56
34 34 0.18
35 3 0.02
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:3133488 original size:65 final size:67
Alignment explanation
Indices: 3133412--3133647 Score: 356
Period size: 67 Copynumber: 3.6 Consensus size: 67
3133402 ATTGGGCTTA
*
3133412 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGG-TTGCCACCAACTTGTGTGGGCTTT-
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
3133475 GG
66 GG
* *
3133477 GAAGGGTTGCCACTGACTTGTGTGGGCTTT-GGGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
3133541 GAG
66 G-G
* * *
3133544 GAA-GGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTTGCCGCCGACTTGTGTGGGCTTTA
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
*
3133608 GA
66 GG
*
3133610 GAAGGTTTGCCACCGACTTGTGTGGGCTTTAGA-AAGGG
1 GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGG
3133648 TGAAAGATGC
Statistics
Matches: 156, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
64 6 0.04
65 53 0.34
66 34 0.22
67 63 0.40
ACGTcount: A:0.18, C:0.17, G:0.36, T:0.28
Consensus pattern (67 bp):
GAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGATTGCCACCAACTTGTGTGGGCTTTA
GG
Found at i:3133692 original size:33 final size:33
Alignment explanation
Indices: 3133650--3133891 Score: 257
Period size: 33 Copynumber: 7.4 Consensus size: 33
3133640 AGAAAGGGTG
* * *
3133650 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
3133682 ACAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAA
1 A-AAGAGTGCCACGGAGTTGTGGGC-TTAAAA-GG--A
*
3133719 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG-A
* *
3133753 AAAGAGTGCCACGGAGTCGTGGACTTAAAA-G-
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
3133784 ---G-GTGCCACGGAGTCGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGG-A
* *
3133814 AAAGAGTGCCACGGAGTTATGGGCTTAGAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
* *
3133847 AAAGAGTGCCACGTAGTTGTGGGCTTTAAAGGA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
3133880 AAAGAGTGCCAC
1 AAAGAGTGCCAC
3133892 ATAGGTCGAA
Statistics
Matches: 181, Mismatches: 15, Indels: 27
0.81 0.07 0.12
Matches are distributed among these distances:
27 23 0.13
28 2 0.01
32 1 0.01
33 63 0.35
34 60 0.33
35 3 0.02
36 8 0.04
37 21 0.12
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.18
Consensus pattern (33 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAAAAGGA
Found at i:3133760 original size:34 final size:34
Alignment explanation
Indices: 3133650--3133891 Score: 256
Period size: 34 Copynumber: 7.4 Consensus size: 34
3133640 AGAAAGGGTG
* * * *
3133650 AAAGA-TGCCACGAAGTTGTGGACTTAAAAAGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
3133683 CAAG-GTGCCACGGAGTTGTGGGCTTTAAAAGGGAAA
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAA-GG-AA
3133719 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
3133753 AAAGAGTGCCACGGAGTCGTGGACTT-------A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
* *
3133780 AAAGGGTGCCACGGAGTCGTGGGCTTAGAAGGAA
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
3133814 AAAGAGTGCCACGGAGTTATGGGCTTAGAAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
*
3133847 AAAGAGTGCCACGTAGTTGTGGGCTTTA-AAGG-A
1 AAAGAGTGCCACGGAGTTGTGGGC-TTAGAAGGAA
3133880 AAAGAGTGCCAC
1 AAAGAGTGCCAC
3133892 ATAGGTCGAA
Statistics
Matches: 181, Mismatches: 15, Indels: 26
0.82 0.07 0.12
Matches are distributed among these distances:
27 25 0.14
33 59 0.33
34 65 0.36
35 3 0.02
36 10 0.06
37 19 0.10
ACGTcount: A:0.33, C:0.14, G:0.34, T:0.18
Consensus pattern (34 bp):
AAAGAGTGCCACGGAGTTGTGGGCTTAGAAGGAA
Found at i:3133811 original size:27 final size:27
Alignment explanation
Indices: 3133752--3133811 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
3133742 CTTAGAAGGA
*
3133752 AAAAGAGTGCCACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
3133779 AAAAGGGTGCCACGGAGTCGTGGGCTT
1 AAAAGGGTGCCACGGAGTCGTGGACTT
*
3133806 AGAAGG
1 AAAAGG
3133812 AAAAAGAGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.17, G:0.38, T:0.17
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTCGTGGACTT
Found at i:3133876 original size:95 final size:98
Alignment explanation
Indices: 3133686--3133878 Score: 295
Period size: 95 Copynumber: 2.0 Consensus size: 98
3133676 AAAAGAACAA
* *
3133686 GGTGCCACGGAGTTGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTGTGGGCTTAGAAGG
1 GGTGCCACGGAGTCGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTATGGGCTTAGAAGG
3133751 AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAG
66 AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAG
*
3133784 GGTGCCACGGAGTCGTGGGC-TTAGAA-GG-AAAAAGAGTGCCACGGAGTTATGGGCTTAGAAGG
1 GGTGCCACGGAGTCGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTATGGGCTTAGAAGG
* * * *
3133846 -AAAAGAGTGCCACGTAGTTGTGGGCTTTAAAG
66 AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAG
3133878 G
1 G
3133879 AAAAGAGTGC
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
94 29 0.33
95 33 0.38
96 2 0.02
97 5 0.06
98 19 0.22
ACGTcount: A:0.30, C:0.13, G:0.37, T:0.19
Consensus pattern (98 bp):
GGTGCCACGGAGTCGTGGGCTTTAAAAGGGAAAAAAGAGTGCCACGGAGTTATGGGCTTAGAAGG
AAAAAGAGTGCCACGGAGTCGTGGACTTAAAAG
Found at i:3134213 original size:16 final size:15
Alignment explanation
Indices: 3134190--3134219 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
3134180 TGATTTTCTC
3134190 CCCCTTTTTGTTATT
1 CCCCTTTTTGTTATT
3134205 CCCCTTTTTGTTATT
1 CCCCTTTTTGTTATT
3134220 AAAAAATAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.27, G:0.07, T:0.60
Consensus pattern (15 bp):
CCCCTTTTTGTTATT
Found at i:3139019 original size:13 final size:13
Alignment explanation
Indices: 3138978--3139026 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
3138968 CCGTTACAAG
3138978 CAATGTATCGATA
1 CAATGTATCGATA
3138991 CAAT-T-TC-AT-
1 CAATGTATCGATA
3139000 C-ATGTATCGATA
1 CAATGTATCGATA
3139012 CAATGTATCGATA
1 CAATGTATCGATA
3139025 CA
1 CA
3139027 TTGTCCCATG
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.06
9 2 0.06
10 4 0.13
11 4 0.13
12 2 0.06
13 17 0.55
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3139042 original size:33 final size:34
Alignment explanation
Indices: 3138978--3139047 Score: 108
Period size: 33 Copynumber: 2.1 Consensus size: 34
3138968 CCGTTACAAG
*
3138978 CAATGTATCGATACAATTTCATCATGTATCGATA
1 CAATGTATCGATACAATTTCACCATGTATCGATA
3139012 CAATGTATCGATAC-ATTGTC-CCATGTATCGATA
1 CAATGTATCGATACAATT-TCACCATGTATCGATA
3139045 CAA
1 CAA
3139048 ATAGTGATAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
33 18 0.53
34 16 0.47
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (34 bp):
CAATGTATCGATACAATTTCACCATGTATCGATA
Found at i:3139160 original size:33 final size:32
Alignment explanation
Indices: 3139097--3139161 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
3139087 ACAATTGTCT
* * *
3139097 ATGTATCGATATAATGAGCATGTATTGATACA
1 ATGTATCGATACAAAGAGCATGTATCGATACA
*
3139129 ATGTATCGATACAAAGCAGTATGTATCGATACA
1 ATGTATCGATACAAAG-AGCATGTATCGATACA
3139162 TCTGGAAGTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
32 14 0.50
33 14 0.50
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.31
Consensus pattern (32 bp):
ATGTATCGATACAAAGAGCATGTATCGATACA
Found at i:3146376 original size:33 final size:34
Alignment explanation
Indices: 3146313--3146378 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
3146303 CGTTACAAGC
*
3146313 AATGTATCGATACAATTTCATCATGTATCGATAT
1 AATGTATCGATACAATTTCACCATGTATCGATAT
3146347 AATGTATCGATAC-ATTGTC-CCATGTATCGATA
1 AATGTATCGATACAATT-TCACCATGTATCGATA
3146379 CAAATAGTGA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
33 15 0.50
34 15 0.50
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (34 bp):
AATGTATCGATACAATTTCACCATGTATCGATAT
Found at i:3146440 original size:20 final size:20
Alignment explanation
Indices: 3146410--3146464 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
3146400 CTGCCAGTTT
* *
3146410 CATGTAACGATACAATTG-T
1 CATGTATCGATACAATTGAG
3146429 CTATGTATCGATACAA-TGAG
1 C-ATGTATCGATACAATTGAG
3146449 CATGTATCGATACAAT
1 CATGTATCGATACAAT
3146465 GTATCGATAC
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:3146468 original size:13 final size:13
Alignment explanation
Indices: 3146450--3146476 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3146440 TACAATGAGC
3146450 ATGTATCGATACA
1 ATGTATCGATACA
3146463 ATGTATCGATACA
1 ATGTATCGATACA
3146476 A
1 A
3146477 AGCAGTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3154209 original size:13 final size:13
Alignment explanation
Indices: 3154168--3154216 Score: 54
Period size: 13 Copynumber: 4.2 Consensus size: 13
3154158 CCGTTACAAG
3154168 CAATGTATCGATA
1 CAATGTATCGATA
*
3154181 CAAT-T-TC-CT-
1 CAATGTATCGATA
3154190 C-ATGTATCGATA
1 CAATGTATCGATA
3154202 CAATGTATCGATA
1 CAATGTATCGATA
3154215 CA
1 CA
3154217 TTGTCCCATG
Statistics
Matches: 29, Mismatches: 2, Indels: 10
0.71 0.05 0.24
Matches are distributed among these distances:
8 2 0.07
9 2 0.07
10 3 0.10
11 3 0.10
12 2 0.07
13 17 0.59
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3154209 original size:34 final size:33
Alignment explanation
Indices: 3154168--3154237 Score: 115
Period size: 33 Copynumber: 2.1 Consensus size: 33
3154158 CCGTTACAAG
3154168 CAATGTATCGATACAATT-TCCTCATGTATCGATA
1 CAATGTATCGATAC-ATTGTCC-CATGTATCGATA
3154202 CAATGTATCGATACATTGTCCCATGTATCGATA
1 CAATGTATCGATACATTGTCCCATGTATCGATA
3154235 CAA
1 CAA
3154238 ATAGTGATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
33 18 0.51
34 17 0.49
ACGTcount: A:0.33, C:0.21, G:0.13, T:0.33
Consensus pattern (33 bp):
CAATGTATCGATACATTGTCCCATGTATCGATA
Done.