Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold44
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3265628
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.28
Warning! 491382 characters in sequence are not A, C, G, or T
File 7 of 17
Found at i:1134951 original size:21 final size:22
Alignment explanation
Indices: 1134911--1134953 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
1134901 ATTTTTAATA
1134911 AAACTCCCCCTTTATAAAAACT
1 AAACTCCCCCTTTATAAAAACT
* *
1134933 AAACTCCTCTTTTATAAAAAC
1 AAACTCCCCCTTTATAAAAAC
1134954 AAAATTTATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.28, G:0.00, T:0.30
Consensus pattern (22 bp):
AAACTCCCCCTTTATAAAAACT
Found at i:1138101 original size:79 final size:79
Alignment explanation
Indices: 1138018--1138169 Score: 232
Period size: 79 Copynumber: 1.9 Consensus size: 79
1138008 ATCCCTTCAA
* * *
1138018 AAATAACGGGATTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
1 AAATAACGGGATCGGAGTATCCCCGATGGTGGAAAATCGATATTTTGGAAATAAAACCGGGGTTG
1138083 GAATATCCCCTTGG
66 GAATATCCCCTTGG
* * * *
1138097 AAATAACGGGGTCGGAGTATCCCCGATTGTGGAAGATCGATATTTTGGAAATAAAATCGGGGTTG
1 AAATAACGGGATCGGAGTATCCCCGATGGTGGAAAATCGATATTTTGGAAATAAAACCGGGGTTG
*
1138162 GAGTATCC
66 GAATATCC
1138170 TTGATTGTGG
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 65 1.00
ACGTcount: A:0.30, C:0.14, G:0.30, T:0.26
Consensus pattern (79 bp):
AAATAACGGGATCGGAGTATCCCCGATGGTGGAAAATCGATATTTTGGAAATAAAACCGGGGTTG
GAATATCCCCTTGG
Found at i:1138166 original size:51 final size:51
Alignment explanation
Indices: 1138103--1138222 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
1138093 TTGGAAATAA
* * *
1138103 CGGGGTCGGAGTATCCCCGATTGTGGAAGATCGATATTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAAT
** * *
1138154 CGGGGTTGGAGTATCCTTGATTGTGGAAAATTGATGTTTTAGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAAT
1138205 CGGGGTTAGG-GTATCCCC
1 CGGGGTT-GGAGTATCCCC
1138223 TCAAAAATAA
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 57 0.97
52 2 0.03
ACGTcount: A:0.28, C:0.12, G:0.30, T:0.30
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATCGATATTTTAGAAATAAAAT
Found at i:1138266 original size:130 final size:130
Alignment explanation
Indices: 1138024--1138278 Score: 307
Period size: 130 Copynumber: 2.0 Consensus size: 130
1138014 TCAAAAATAA
*
1138024 CGGGATTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTGGAAATAAAACCGGGGTTGGAATAT
1 CGGGATTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAATAT
*** ** * * * *
1138089 CCCCTTGGAAATAACGGGGTCGGAGTATCCCCGATTGTGGAAGATCGATATTTTGGAAATAAAAT
66 CCCCTCAAAAATAACACGATCGGAGTATCCCCGATTGTGAAAAATCGATATTTTAGAAATAAAAT
* ** * * *
1138154 CGGGGTTGGAGTATCCTTGATTGTGGAAAATTGATGTTTTAGAAATAAAATCGGGGTTAGG-GTA
1 CGGGATTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTT-GGAATA
* * *
1138218 TCCCCTCAAAAATAACACTATTGGAGTATCCCCGATTG-GAAAAAATCGATGTTTTAGAAAT
65 TCCCCTCAAAAATAACACGATCGGAGTATCCCCGATTGTG-AAAAATCGATATTTTAGAAAT
1138279 GAAAGGAATA
Statistics
Matches: 104, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
129 1 0.01
130 101 0.97
131 2 0.02
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (130 bp):
CGGGATTGGAGTATCCCCGATGGTGGAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAATAT
CCCCTCAAAAATAACACGATCGGAGTATCCCCGATTGTGAAAAATCGATATTTTAGAAATAAAAT
Found at i:1139035 original size:33 final size:31
Alignment explanation
Indices: 1138995--1139096 Score: 123
Period size: 33 Copynumber: 3.1 Consensus size: 31
1138985 CCGTTACAAG
*
1138995 CAATGTATCGATACAATTCATCATGTATCGATA
1 CAATGTATCGAGAC-ATT-ATCATGTATCGATA
1139028 CAATGTATCGAGACATTATACCATGTATCGATA
1 CAATGTATCGAGACATTAT--CATGTATCGATA
* *
1139061 CAATGTATCAAGACATTGTACCATGTATCGATA
1 CAATGTATCGAGACA-T-TATCATGTATCGATA
1139094 CAA
1 CAA
1139097 ACAGTGGTAG
Statistics
Matches: 62, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
31 2 0.03
32 3 0.05
33 54 0.87
34 1 0.02
35 2 0.03
ACGTcount: A:0.37, C:0.19, G:0.14, T:0.30
Consensus pattern (31 bp):
CAATGTATCGAGACATTATCATGTATCGATA
Found at i:1139764 original size:22 final size:22
Alignment explanation
Indices: 1139736--1139787 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 22
1139726 GTTTTTGTTT
*
1139736 TTTCTCCCCCTTAATTAAAGAA
1 TTTCTCCCCCTTAATCAAAGAA
*
1139758 TTTCTCCCCCTTAATCAAAGCA
1 TTTCTCCCCCTTAATCAAAGAA
1139780 TTTCTCCC
1 TTTCTCCC
1139788 TCTTTGTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.25, C:0.35, G:0.04, T:0.37
Consensus pattern (22 bp):
TTTCTCCCCCTTAATCAAAGAA
Found at i:1147627 original size:6 final size:6
Alignment explanation
Indices: 1147583--1147618 Score: 54
Period size: 6 Copynumber: 5.7 Consensus size: 6
1147573 GTAATAAGTA
1147583 AAAATT AAAAATT AAAATT AAAATT AAAATT CAAAA
1 AAAATT -AAAATT AAAATT AAAATT AAAATT -AAAA
1147619 AAATAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 18 0.64
7 10 0.36
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (6 bp):
AAAATT
Found at i:1147807 original size:41 final size:41
Alignment explanation
Indices: 1147761--1147842 Score: 155
Period size: 41 Copynumber: 2.0 Consensus size: 41
1147751 GGTGGGAACT
1147761 TACAACAATTGGCAGCATGGGAAAGGAAATAAAAAAATGCA
1 TACAACAATTGGCAGCATGGGAAAGGAAATAAAAAAATGCA
*
1147802 TACAACAATTGGCAGCATGGGAAAGGAAATAAAAAATTGCA
1 TACAACAATTGGCAGCATGGGAAAGGAAATAAAAAAATGCA
1147843 ATTGGAGACA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.50, C:0.12, G:0.22, T:0.16
Consensus pattern (41 bp):
TACAACAATTGGCAGCATGGGAAAGGAAATAAAAAAATGCA
Found at i:1148193 original size:18 final size:18
Alignment explanation
Indices: 1148172--1148224 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
1148162 TCAGCAGCTC
1148172 CAGCAGTAGCTCCAGTAA
1 CAGCAGTAGCTCCAGTAA
* *
1148190 CAGCAATAGCTCTAGTAA
1 CAGCAGTAGCTCCAGTAA
* *
1148208 CAGTAGCAGCTCCAGTA
1 CAGCAGTAGCTCCAGTA
1148225 GCCAACGGCT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
CAGCAGTAGCTCCAGTAA
Found at i:1148317 original size:55 final size:55
Alignment explanation
Indices: 1148232--1148362 Score: 183
Period size: 55 Copynumber: 2.4 Consensus size: 55
1148222 GTAGCCAACG
* *
1148232 GCTCCAGCACGCAAAAGCAGCTCCAGCAGCAGCACCAACTCCAGCAGCGAC-GACA
1 GCTCCAGCACGCAAAAGCAGCTCCAACAGCAGCACCAACTCCAACAGCGACTG-CA
* * * *
1148287 GCTCTAGCATGCAATAGCAGCTCCAACAGCAGCAGCAACTCCAACAGCGACTGCA
1 GCTCCAGCACGCAAAAGCAGCTCCAACAGCAGCACCAACTCCAACAGCGACTGCA
*
1148342 GCTCCAGCACGCAACAGCAGC
1 GCTCCAGCACGCAAAAGCAGC
1148363 AGCAACTCTT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
55 65 0.98
56 1 0.02
ACGTcount: A:0.32, C:0.38, G:0.21, T:0.08
Consensus pattern (55 bp):
GCTCCAGCACGCAAAAGCAGCTCCAACAGCAGCACCAACTCCAACAGCGACTGCA
Found at i:1148346 original size:18 final size:18
Alignment explanation
Indices: 1148302--1148362 Score: 61
Period size: 18 Copynumber: 3.3 Consensus size: 18
1148292 AGCATGCAAT
1148302 AGCAGCTCCAACAGCAGC
1 AGCAGCTCCAACAGCAGC
*
1148320 AGCAACTCCAACAGC-GAC
1 AGCAGCTCCAACAGCAG-C
* * *
1148338 TGCAGCTCCAGCACGCAAC
1 AGCAGCTCCAACA-GCAGC
1148357 AGCAGC
1 AGCAGC
1148363 AGCAACTCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
17 1 0.03
18 25 0.74
19 8 0.24
ACGTcount: A:0.33, C:0.39, G:0.21, T:0.07
Consensus pattern (18 bp):
AGCAGCTCCAACAGCAGC
Found at i:1148357 original size:43 final size:43
Alignment explanation
Indices: 1148310--1148405 Score: 138
Period size: 43 Copynumber: 2.2 Consensus size: 43
1148300 ATAGCAGCTC
*
1148310 CAACAGCAGCAGCAACTCCAACAGCGACTGCAGCTCCAGCACG
1 CAACAGCAGCAGCAACTCCAACAGCGACTGCAGCTCCAGCACA
*** * *
1148353 CAACAGCAGCAGCAACTCTTGCAGCGACTGCAGCTCTAGCATA
1 CAACAGCAGCAGCAACTCCAACAGCGACTGCAGCTCCAGCACA
1148396 CAACAGCAGC
1 CAACAGCAGC
1148406 TTCAGTGAGA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 47 1.00
ACGTcount: A:0.32, C:0.36, G:0.21, T:0.10
Consensus pattern (43 bp):
CAACAGCAGCAGCAACTCCAACAGCGACTGCAGCTCCAGCACA
Found at i:1148504 original size:17 final size:17
Alignment explanation
Indices: 1148482--1148515 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
1148472 AGCAACTATG
1148482 GAAAAAAAAAAAGGAAA
1 GAAAAAAAAAAAGGAAA
*
1148499 GAAAAAAAACAAGGAAA
1 GAAAAAAAAAAAGGAAA
1148516 ATACTTTGGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (17 bp):
GAAAAAAAAAAAGGAAA
Found at i:1151906 original size:20 final size:19
Alignment explanation
Indices: 1151864--1151916 Score: 61
Period size: 20 Copynumber: 2.7 Consensus size: 19
1151854 GTTACAAGCA
*
1151864 ATGTATCGATACAATTCATC
1 ATGTATCGATAC-ATTCACC
*
1151884 ATGTATCGATACATTGTACC
1 ATGTATCGATACATT-CACC
*
1151904 ATGTATTGATACA
1 ATGTATCGATACA
1151917 AATAGTGGTA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36
Consensus pattern (19 bp):
ATGTATCGATACATTCACC
Found at i:1160412 original size:22 final size:24
Alignment explanation
Indices: 1160382--1160425 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
1160372 CCTCATAATC
*
1160382 TCTTCAAGA-ATTATATCCCAAAT
1 TCTTCAAGAGATTATAACCCAAAT
1160405 TCTT-AAGAGATTATAACCCAA
1 TCTTCAAGAGATTATAACCCAA
1160426 GGCTGAATGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (24 bp):
TCTTCAAGAGATTATAACCCAAAT
Found at i:1160964 original size:13 final size:13
Alignment explanation
Indices: 1160946--1160972 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1160936 ACAATTGGGC
1160946 ATGTATCGATACA
1 ATGTATCGATACA
1160959 ATGTATCGATACA
1 ATGTATCGATACA
1160972 A
1 A
1160973 AGCATTATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1165655 original size:33 final size:33
Alignment explanation
Indices: 1165595--1165657 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1165585 TATATCTAGA
**
1165595 TGTATCGATACATCATGCTTTGCATCGATATAT
1 TGTATCGATACATCATGAATTGCATCGATATAT
*
1165628 TGTATCGATACATACAT-AATTGTATCGATA
1 TGTATCGATACAT-CATGAATTGCATCGATA
1165658 CATGAAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 23 0.88
34 3 0.12
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATCATGAATTGCATCGATATAT
Found at i:1171206 original size:78 final size:79
Alignment explanation
Indices: 1171100--1171301 Score: 228
Period size: 78 Copynumber: 2.6 Consensus size: 79
1171090 TAATAACAGG
* * * * * * *
1171100 GTTGGAGTGTTCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGAGGA-TTA
1 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATC-AAGATTTA
* *
1171164 GAAAAAAAATCGGGA
65 GAAAAAAAAGCCGGA
* * *
1171179 -TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTG
1 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAGATTTAG
** *
1171243 GGAATAAAGCCGGA
66 AAAAAAAAGCCGGA
* *
1171257 GTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGAT
1 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT
1171302 GAAATAACGA
Statistics
Matches: 103, Mismatches: 18, Indels: 4
0.82 0.14 0.03
Matches are distributed among these distances:
77 2 0.02
78 60 0.58
79 41 0.40
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (79 bp):
GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAGATTTAG
AAAAAAAAGCCGGA
Found at i:1171297 original size:28 final size:28
Alignment explanation
Indices: 1171257--1171324 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
1171247 TAAAGCCGGA
** * *
1171257 GTTGGAGTATCCCCTCGGAAGTAACGGG
1 GTTGGAGTATCCCCGAGGAAATAACGAG
*
1171285 GTTGGAGTATCCCCGATGAAATAACGAG
1 GTTGGAGTATCCCCGAGGAAATAACGAG
1171313 GTTGGAGTATCC
1 GTTGGAGTATCC
1171325 TCGATTATGA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.24
Consensus pattern (28 bp):
GTTGGAGTATCCCCGAGGAAATAACGAG
Found at i:1171376 original size:52 final size:52
Alignment explanation
Indices: 1171313--1171646 Score: 188
Period size: 52 Copynumber: 6.3 Consensus size: 52
1171303 AAATAACGAG
*
1171313 GTTGGAGTATCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGA
* * ** * *
1171365 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-ATGAAAAATTGGTATTTTTGGAAATAAAATC-GGA
* * * * *
1171418 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAAATTGGTATTTTTG-GAAATAAAATCGGA
* **** * * *
1171469 GTTGGAGTATCCCC--TCA-GAAATAACGGGGTTGG-AGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTATGAAA-AA-----TTGGTA-T-TTTTGGA-AATAAAATCGGA
* *
1171524 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGA
* * * *
1171578 GTTAGAGTATCCCCGATTAT-AGAAAATTAGT-GTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGA-AAAATTGGTATTTTTGGAAATAAAATCGGA
* *
1171629 GTTGGAATATCCTCGATT
1 GTTGGAGTATCCCCGATT
1171647 GTGGAGAATT
Statistics
Matches: 213, Mismatches: 43, Indels: 53
0.69 0.14 0.17
Matches are distributed among these distances:
48 4 0.02
49 2 0.01
50 1 0.00
51 36 0.17
52 79 0.37
53 34 0.16
54 28 0.13
55 18 0.08
56 2 0.01
57 3 0.01
58 5 0.02
59 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGA
Found at i:1171509 original size:28 final size:27
Alignment explanation
Indices: 1171469--1171537 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
1171459 TAAAACCGGA
1171469 GTTGGAGTATCCCCTCA-GAAATAACGGG
1 GTTGGAGTATCCCC-CATG-AATAACGGG
* *
1171497 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCCATGAATAACGGG
1171524 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
1171538 GATTGTGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (27 bp):
GTTGGAGTATCCCCCATGAATAACGGG
Found at i:1171552 original size:107 final size:105
Alignment explanation
Indices: 1171199--1171591 Score: 332
Period size: 107 Copynumber: 3.7 Consensus size: 105
1171189 CCCTCGAAAA
* * * * * *
1171199 TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGAGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTTGGAATAAAACCGGAGTTGGAG
* *
1171264 TATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAA
66 TATCCCCTC-GAAATAACGGGGTTGGAGTATCCCCGATG-AT
* * * *
1171306 TAACGAGGTTGGAGTATCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTTGG-AATAAAACCGGAGTTGGA
* * ** * ** **
1171371 GTAT-CCC-CG-ATTAAAGGAAAATTGGCGT-T--TTGAAAAT
65 GTATCCCCTCGAAATAACGG--GGTTGGAGTATCCCCGATGAT
* * * * * *
1171408 AAAACCAGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-ATAAAACCGGAGTT
1 -TAA-CGGGGTTGGAGTATCCCCGATTAT-GAAAAATTAGTATTTTTG-GAATAAAACCGGAGTT
1171472 GGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAT
62 GGAGTATCCCCTC-GAAATAACGGGGTTGGAGTATCCCCGATGAT
* * * * *
1171517 TAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 TAACGGGGTTGGAGTATCCCCGATTATGAA-AAATTAGT-ATTTTTGG-AATAAAACCGGAGTTG
1171582 GAGTATCCCC
63 GAGTATCCCC
1171592 GATTATAGAA
Statistics
Matches: 221, Mismatches: 47, Indels: 34
0.73 0.16 0.11
Matches are distributed among these distances:
102 1 0.00
103 4 0.02
104 45 0.20
105 20 0.09
106 18 0.08
107 73 0.33
108 33 0.15
109 27 0.12
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.27
Consensus pattern (105 bp):
TAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTTGGAATAAAACCGGAGTTGGAG
TATCCCCTCGAAATAACGGGGTTGGAGTATCCCCGATGAT
Found at i:1171605 original size:212 final size:212
Alignment explanation
Indices: 1171246--1171651 Score: 629
Period size: 212 Copynumber: 1.9 Consensus size: 212
1171236 TATTTTGGGA
* * *
1171246 ATAAAGCCGGAGTTGGAGTATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAATAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
* *
1171311 AGGTTGGAGTATCCTCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATC
66 AGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
* *
1171376 CCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA-TTGGAGTATCCCCGATTGTGGA
131 CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACC-GGAGTTGGAATATCCCCGATTGTGGA
1171440 AAAATTAGTGTTTTAGCG
195 AAAATTAGTGTTTTAGCG
*
1171458 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
* * *
1171522 GGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTA
66 AGGTTGGAGTATCCCCGATTATGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGTA
* * * *
1171587 TCCCCGATTATA-GAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCTCGATTGTGG
129 TCCCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGG
1171651 A
194 A
1171652 GAATTGATAA
Statistics
Matches: 176, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
211 31 0.18
212 106 0.60
213 39 0.22
ACGTcount: A:0.32, C:0.14, G:0.27, T:0.28
Consensus pattern (212 bp):
ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
AGGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAA
AAATTAGTGTTTTAGCG
Found at i:1171624 original size:51 final size:53
Alignment explanation
Indices: 1171528--1171646 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 53
1171518 AACGGGGTTG
* * *
1171528 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
1171582 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
1171633 GAATATCCTCGATT
1 GAGTATCCCCGATT
1171647 GTGGAGAATT
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 33 0.57
52 2 0.03
53 8 0.14
54 15 0.26
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:1174021 original size:13 final size:13
Alignment explanation
Indices: 1174003--1174028 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1173993 ACAAAGATCC
1174003 ATGTATCGATACA
1 ATGTATCGATACA
1174016 ATGTATCGATACA
1 ATGTATCGATACA
1174029 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1174024 original size:33 final size:33
Alignment explanation
Indices: 1173982--1174048 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1173972 AAAATTTCCA
***
1173982 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
1174015 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
1174048 A
1 A
1174049 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:1174092 original size:19 final size:18
Alignment explanation
Indices: 1174068--1174135 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
1174058 CAGTAGCTAA
1174068 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
1174087 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
1174102 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
1174119 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
1174136 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:1174108 original size:13 final size:13
Alignment explanation
Indices: 1174090--1174114 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1174080 ACAATACTTA
1174090 TGTATCGATACAT
1 TGTATCGATACAT
1174103 TGTATCGATACA
1 TGTATCGATACA
1174115 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1174112 original size:32 final size:32
Alignment explanation
Indices: 1174071--1174133 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
1174061 TAGCTAATTA
*
1174071 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
1174103 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
1174134 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:1174213 original size:13 final size:13
Alignment explanation
Indices: 1174195--1174220 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1174185 TAAATATTTT
1174195 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
1174208 TTTTTTTTTTCAA
1 TTTTTTTTTTCAA
1174221 ACACTTTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.00, T:0.77
Consensus pattern (13 bp):
TTTTTTTTTTCAA
Found at i:1176508 original size:13 final size:13
Alignment explanation
Indices: 1176490--1176514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1176480 CAGCATTCTC
1176490 TGTATCGATACAT
1 TGTATCGATACAT
1176503 TGTATCGATACA
1 TGTATCGATACA
1176515 AAAGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1178826 original size:13 final size:13
Alignment explanation
Indices: 1178808--1178833 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1178798 TACACAAAAT
1178808 ATGTATCGATACA
1 ATGTATCGATACA
1178821 ATGTATCGATACA
1 ATGTATCGATACA
1178834 CAAAAAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1178833 original size:32 final size:33
Alignment explanation
Indices: 1178790--1178854 Score: 105
Period size: 34 Copynumber: 2.0 Consensus size: 33
1178780 TAGCCAAACT
1178790 TGTATCAATACAC-AAAATATGTATCGATACAA
1 TGTATCAATACACAAAAATATGTATCGATACAA
*
1178822 TGTATCGATACACAAAAAATATGTATCGATACA
1 TGTATCAATACAC-AAAAATATGTATCGATACA
1178855 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 12 0.40
34 18 0.60
ACGTcount: A:0.46, C:0.15, G:0.11, T:0.28
Consensus pattern (33 bp):
TGTATCAATACACAAAAATATGTATCGATACAA
Found at i:1186577 original size:52 final size:52
Alignment explanation
Indices: 1186499--1186699 Score: 332
Period size: 52 Copynumber: 3.9 Consensus size: 52
1186489 CGAAATATGA
1186499 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
*
1186551 AAATTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
** *
1186603 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
**
1186655 AAATTTGCCTGCATGTATCGATACAAAG-ATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAAT-AGTGTATCGATACA
1186700 ATGTATCGAT
Statistics
Matches: 141, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
51 2 0.01
52 139 0.99
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.33
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
Found at i:1186706 original size:13 final size:13
Alignment explanation
Indices: 1186688--1186712 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1186678 CAAAGATCAG
1186688 TGTATCGATACAA
1 TGTATCGATACAA
1186701 TGTATCGATACA
1 TGTATCGATACA
1186713 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1186790 original size:33 final size:33
Alignment explanation
Indices: 1186753--1186819 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
1186743 AGTAGCTTGA
1186753 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
1186786 ATTGTATCGATACAATACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
1186819 A
1 A
1186820 AATCGCTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:1186793 original size:13 final size:13
Alignment explanation
Indices: 1186775--1186799 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1186765 CAAAAAAATA
1186775 TGTATCGATACAT
1 TGTATCGATACAT
1186788 TGTATCGATACA
1 TGTATCGATACA
1186800 ATACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1187774 original size:43 final size:43
Alignment explanation
Indices: 1187713--1188262 Score: 535
Period size: 43 Copynumber: 12.1 Consensus size: 43
1187703 TAAAGATGGA
* *
1187713 AAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
*
1187756 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1187799 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* **
1187842 GAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTAGG-CTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATT-GGACTT
* *
1187891 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
1187934 AAAGAAGAAGTTGCCAATATGCGGATTCAAGGCCAGCGATATTGGACTT
1 --A-AAG--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1187983 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* ** *
1188026 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1188075 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
1188118 AAAGAAGAAGTTGTCAATATGCGGATTCAAGGCCAGCGATATTGGACTT
1 --A-AAG--G-TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* *
1188167 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
1188210 AAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
1188259 AAAG
1 AAAG
1188263 ATGAGAGAAA
Statistics
Matches: 421, Mismatches: 54, Indels: 64
0.78 0.10 0.12
Matches are distributed among these distances:
42 2 0.00
43 220 0.52
44 2 0.00
45 5 0.01
46 12 0.03
48 2 0.00
49 176 0.42
50 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:1187896 original size:92 final size:92
Alignment explanation
Indices: 1187713--1188262 Score: 844
Period size: 92 Copynumber: 6.0 Consensus size: 92
1187703 TAAAGATGGA
* * * *
1187713 AAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT----A--AAGGTGCCAATGTGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1187772 TGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
1187799 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTGAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1187864 TGATTCAAGGCCAGAGATATTAGG-CTT
66 TGATTCAAGGCCAGCGATATT-GGACTT
* * *
1187891 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1187956 GGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
*
1187983 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
* *
1188048 TGATTCAAGGCCAGAGATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* * * *
1188075 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGTCAATATGC
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1188140 GGATTCAAGGCCAGCGATATTGGACTT
66 TGATTCAAGGCCAGCGATATTGGACTT
* *
1188167 GAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
1188232 TGATTCAAGGCCAGCGATATTGGGCTT
66 TGATTCAAGGCCAGCGATATTGGACTT
1188259 AAAG
1 AAAG
1188263 ATGAGAGAAA
Statistics
Matches: 419, Mismatches: 37, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
86 39 0.09
90 1 0.00
91 2 0.00
92 375 0.89
93 2 0.00
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (92 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGC
TGATTCAAGGCCAGCGATATTGGACTT
Found at i:1187985 original size:184 final size:184
Alignment explanation
Indices: 1187713--1188262 Score: 959
Period size: 184 Copynumber: 3.0 Consensus size: 184
1187703 TAAAGATGGA
* * * * *
1187713 AAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT--A-AAG--G-TGCCAATGTGC
1 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
*
1187772 TGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* *
1187837 GACTTGAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTAGGCTT
131 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
1187891 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
1 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
1187956 GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
1188021 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
131 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
*
1188075 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGTCAATATGC
1 AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
1188140 GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
66 GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* *
1188205 GACTTAAAGATGAAGGTGCCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT
131 GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
1188259 AAAG
1 AAAG
1188263 ATGAGAGAAA
Statistics
Matches: 355, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
178 39 0.11
180 1 0.00
181 3 0.01
183 1 0.00
184 311 0.88
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.25
Consensus pattern (184 bp):
AAAGGTGTCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGTTGCCAATATGC
GGATTCAAGGCCAGCGATATTGGACTTGAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
GACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGAGATATTGGGCTT
Found at i:1188355 original size:32 final size:32
Alignment explanation
Indices: 1188307--1188433 Score: 170
Period size: 32 Copynumber: 4.0 Consensus size: 32
1188297 CCAGCGATAT
**
1188307 TGGGC-TTAGA-AGGGTTGCCATTGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1188337 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
* *
1188369 TGGGCTTT-GAGAAGGGCTGCCACCGCCTTGTG
1 TGGGCTTTAGAG-AGGGTTGCCACCGACTTGTG
*
1188401 TGGGCTTTAGAAGAAGGTTGCCACCGACTTGTG
1 TGGGCTTTAG-AGAGGGTTGCCACCGACTTGTG
1188434 GACTTAAAAA
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
30 5 0.06
31 8 0.09
32 52 0.61
33 18 0.21
34 2 0.02
ACGTcount: A:0.17, C:0.19, G:0.36, T:0.28
Consensus pattern (32 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTG
Found at i:1188456 original size:33 final size:33
Alignment explanation
Indices: 1188419--1188481 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1188409 AGAAGAAGGT
1188419 TGCCACCG-ACTTGTGGACTTAAAAAGAAAAGAG
1 TGCCA-CGTACTTGTGGACTTAAAAAGAAAAGAG
* * *
1188452 TGCCACGTAGTTGTGGACTTTAAAGGAAAA
1 TGCCACGTACTTGTGGACTTAAAAAGAAAA
1188482 AAGGGTGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.08
33 24 0.92
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22
Consensus pattern (33 bp):
TGCCACGTACTTGTGGACTTAAAAAGAAAAGAG
Found at i:1188503 original size:35 final size:35
Alignment explanation
Indices: 1188431--1188512 Score: 96
Period size: 35 Copynumber: 2.4 Consensus size: 35
1188421 CCACCGACTT
* * *
1188431 GTGGACTTAAAA--AGAAAAGAGTGCCACGTAGTT
1 GTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTC
* * *
1188464 GTGGACTTTAAAGGAAAAAAGGGTGCTACGGAGTC
1 GTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTC
1188499 GTGGACTTAAAAGG
1 GTGGACTTAAAAGG
1188513 GTGCCACGGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
33 11 0.28
35 29 0.73
ACGTcount: A:0.37, C:0.11, G:0.32, T:0.21
Consensus pattern (35 bp):
GTGGACTTAAAAGGAAAAAAGAGTGCCACGGAGTC
Found at i:1188521 original size:27 final size:27
Alignment explanation
Indices: 1188480--1188683 Score: 158
Period size: 27 Copynumber: 7.1 Consensus size: 27
1188470 TTTAAAGGAA
* *
1188480 AAAAGGGTGCTACGGAGTCGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1188507 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
*
1188534 AAACGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
* ** *
1188561 AGAAGGAAAACGAATGCCACTAAGTTGTGGGCTTT
1 AAAAGG-----G--TGCCACGGAGTTGTGGAC-TT
*
1188596 AAAAGGGTGCCACGAAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGAC-TT
**
1188624 GATGAGAA-GGTGCCACTAAGTTGTGGACTT
1 -A--A-AAGGGTGCCACGGAGTTGTGGACTT
* * *
1188654 AAAAGGGTGCCATGGAGTTATGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTT
1188681 AAA
1 AAA
1188684 CGGGAAAAGA
Statistics
Matches: 145, Mismatches: 19, Indels: 26
0.76 0.10 0.14
Matches are distributed among these distances:
26 2 0.01
27 74 0.51
28 19 0.13
29 2 0.01
30 3 0.02
31 20 0.14
32 3 0.02
34 15 0.10
35 7 0.05
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTT
Found at i:1188615 original size:62 final size:60
Alignment explanation
Indices: 1188507--1188728 Score: 225
Period size: 62 Copynumber: 3.7 Consensus size: 60
1188497 TCGTGGACTT
* ** *
1188507 AAAAGGGTGCCACGGAGTTGTGGGCTTAAACGGGTGCCACGGAGTTGTGGACTTAGAAGG
1 AAAAGAGTGCCACTAAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGG
* * * *
1188567 AAAACGAATGCCACTAAGTTGTGGGCTTTAAAAGGGTGCCACGAAGTTGTGGACTTTG-ATG
1 AAAA-GAGTGCCACTAAGTTGTGGGC-TTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGG
* * * * *
1188628 AGAAG-GTGCCACTAAGTTGTGGACTTAAAAGGGTGCCATGGAGTTATGGGCTTA-AACGGG
1 AAAAGAGTGCCACTAAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAA--GG
* * * *
1188688 AAAAGAGCGCCGCAAAATTGTGGGCTTTAAAAGGGTGCCAC
1 AAAAGAGTGCCACTAAGTTGTGGGC-TTAAAAGGGTGCCAC
1188729 AACCAACGAG
Statistics
Matches: 131, Mismatches: 24, Indels: 12
0.78 0.14 0.07
Matches are distributed among these distances:
58 26 0.20
59 17 0.13
60 10 0.08
61 36 0.27
62 42 0.32
ACGTcount: A:0.29, C:0.15, G:0.34, T:0.22
Consensus pattern (60 bp):
AAAAGAGTGCCACTAAGTTGTGGGCTTAAAAGGGTGCCACGGAGTTGTGGACTTAGAAGG
Found at i:1188656 original size:120 final size:119
Alignment explanation
Indices: 1188512--1188728 Score: 292
Period size: 120 Copynumber: 1.8 Consensus size: 119
1188502 GACTTAAAAG
* * * * *
1188512 GGTGCCACGGAGTTGTGGGCTTAAACGGGTGCCACGGAGTTGTGGACTTAGAA-GGAAAACGAAT
1 GGTGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTA-AACGGAAAA-GAAC
* *
1188576 GCCACTAAGTTGTGGGCTTTAAAAGGGTGCCACGAAGTTGTGGACTTTGATGAGAA
64 GCCACAAAATTGTGGGCTTTAAAAGGGTGCCACGAAGTTGTGGACTTTGATGAGAA
* * * *
1188632 GGTGCCACTAAGTTGTGGACTTAAAAGGGTGCCATGGAGTTATGGGCTTAAACGGGAAAAGAGCG
1 GGTGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAAC-GGAAAAGAACG
*
1188697 CCGCAAAATTGTGGGCTTTAAAAGGGTGCCAC
65 CCACAAAATTGTGGGCTTTAAAAGGGTGCCAC
1188729 AACCAACGAG
Statistics
Matches: 83, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
119 2 0.02
120 75 0.90
121 6 0.07
ACGTcount: A:0.28, C:0.16, G:0.34, T:0.23
Consensus pattern (119 bp):
GGTGCCACGAAGTTGTGGACTTAAAAGGGTGCCACGGAGTTATGGACTTAAACGGAAAAGAACGC
CACAAAATTGTGGGCTTTAAAAGGGTGCCACGAAGTTGTGGACTTTGATGAGAA
Found at i:1190105 original size:1 final size:1
Alignment explanation
Indices: 1190099--1190209 Score: 69
Period size: 1 Copynumber: 111.0 Consensus size: 1
1190089 TCCGGACCCC
* * * * * * * ** *
1190099 TTTTTTTGTTTTTTGTTTGTTTGTTTTTTTGTTTGTTTTTTTTGTTTTTGCTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * * * * *
1190164 TTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1190210 GTGGAGGACG
Statistics
Matches: 77, Mismatches: 33, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
1 77 1.00
ACGTcount: A:0.00, C:0.01, G:0.14, T:0.85
Consensus pattern (1 bp):
T
Found at i:1190138 original size:27 final size:27
Alignment explanation
Indices: 1190099--1190211 Score: 128
Period size: 27 Copynumber: 4.3 Consensus size: 27
1190089 TCCGGACCCC
*
1190099 TTTTT-TTGTTTTTTG-TTTGTTTGTT
1 TTTTTGTTTTTTTTTGTTTTGTTTGTT
*
1190124 TTTTTGTTTGTTTTTT-TTGTT-TTTGCT
1 TTTTTGTTT-TTTTTTGTT-TTGTTTGTT
1190151 TTTTTGTTTTTTTTTGTTTTGTTT-TT
1 TTTTTGTTTTTTTTTGTTTTGTTTGTT
* *
1190177 GTTTTTGTTTTGTTTTGTTTTGTTTTTT
1 -TTTTTGTTTTTTTTTGTTTTGTTTGTT
1190205 TTTTTGT
1 TTTTTGT
1190212 GGAGGACGCC
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
25 5 0.07
26 11 0.14
27 56 0.74
28 4 0.05
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.84
Consensus pattern (27 bp):
TTTTTGTTTTTTTTTGTTTTGTTTGTT
Found at i:1190161 original size:50 final size:49
Alignment explanation
Indices: 1190100--1190209 Score: 156
Period size: 50 Copynumber: 2.2 Consensus size: 49
1190090 CCGGACCCCT
1190100 TTTTTTGTTTTTTGTTTG-TTTGTTTTT-TTGTTTGTTTT-TTTTGTTTTTG
1 TTTTTTGTTTTTT-TTTGTTTTGTTTTTGTT-TTTGTTTTGTTTTG-TTTTG
1190149 CTTTTTTGTTTTTTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTG
1 -TTTTTTGTTTTTTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTG
1190199 TTTTTT-TTTTT
1 TTTTTTGTTTTT
1190210 GTGGAGGACG
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
48 5 0.09
49 10 0.18
50 35 0.61
51 7 0.12
ACGTcount: A:0.00, C:0.01, G:0.15, T:0.85
Consensus pattern (49 bp):
TTTTTTGTTTTTTTTTGTTTTGTTTTTGTTTTTGTTTTGTTTTGTTTTG
Found at i:1199047 original size:15 final size:15
Alignment explanation
Indices: 1199027--1199057 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1199017 TAAAAATGTC
*
1199027 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
1199042 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
1199057 C
1 C
1199058 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:1201158 original size:13 final size:13
Alignment explanation
Indices: 1201140--1201177 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
1201130 CATTTTTCTT
*
1201140 TGTATCGATGCAA
1 TGTATCGATACAA
*
1201153 TGTATCGATACAC
1 TGTATCGATACAA
1201166 TGTATCGATACA
1 TGTATCGATACA
1201178 GGGGGATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1203743 original size:13 final size:13
Alignment explanation
Indices: 1203725--1203750 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1203715 TACACAAAAT
1203725 ATGTATCGATACA
1 ATGTATCGATACA
1203738 ATGTATCGATACA
1 ATGTATCGATACA
1203751 CAAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1203769 original size:34 final size:32
Alignment explanation
Indices: 1203707--1203771 Score: 94
Period size: 34 Copynumber: 2.0 Consensus size: 32
1203697 TAGCCAAACT
* *
1203707 TGTATCGATACACAAAATATGTATCGATACAA
1 TGTATCGATACACAAAAAATGTACCGATACAA
1203739 TGTATCGATACACAAAAAAAATGTACCGATACA
1 TGTATCGATACAC--AAAAAATGTACCGATACA
1203772 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 13 0.45
34 16 0.55
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (32 bp):
TGTATCGATACACAAAAAATGTACCGATACAA
Found at i:1205200 original size:20 final size:20
Alignment explanation
Indices: 1205157--1205241 Score: 78
Period size: 20 Copynumber: 4.7 Consensus size: 20
1205147 CTTAACTATT
** *
1205157 TGTATCGATACA-CATAATA
1 TGTATCGATACATCCCAAAA
1205176 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCCCAAAA
*
1205196 TGTATCCATACAT-------
1 TGTATCGATACATCCCAAAA
1205209 TGTATCGATACATCCCAAAA
1 TGTATCGATACATCCCAAAA
1205229 TGTATCGATACAT
1 TGTATCGATACAT
1205242 TGGCTTGTAA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
13 12 0.23
19 12 0.23
20 29 0.55
ACGTcount: A:0.38, C:0.21, G:0.11, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATCCCAAAA
Found at i:1205218 original size:33 final size:33
Alignment explanation
Indices: 1205176--1205243 Score: 127
Period size: 33 Copynumber: 2.1 Consensus size: 33
1205166 ACACATAATA
1205176 TGTATCGATACATCCCAAAATGTATCCATACAT
1 TGTATCGATACATCCCAAAATGTATCCATACAT
*
1205209 TGTATCGATACATCCCAAAATGTATCGATACAT
1 TGTATCGATACATCCCAAAATGTATCCATACAT
1205242 TG
1 TG
1205244 GCTTGTAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.35, C:0.22, G:0.12, T:0.31
Consensus pattern (33 bp):
TGTATCGATACATCCCAAAATGTATCCATACAT
Found at i:1210874 original size:97 final size:97
Alignment explanation
Indices: 1210690--1211797 Score: 1751
Period size: 97 Copynumber: 11.4 Consensus size: 97
1210680 ATGAGAAGAA
* * ** * *
1210690 TGCCAATGTGCTGATTCAAGGCCAACGACATTGGGTTTTAAAAATGATGAAGGCGCCAATGTGCT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATT-GGACTT--AAA-GATGAAGGTGCCAATATGCT
* * *
1210755 GAGTCAAGGCCAGCCA-ATTTGGACTTAAAGGTAAGG
62 GATTCAAGGCCAGCTATA-TTGGACTTAAAGGTGAGG
* * *
1210791 TGCCAATGTGCTAATTCAAGGCCAGCAACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1210856 CAAGGCCAGCTATATTGGACTTAATGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* * *
1210888 TGCTAGTGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCATTATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1210953 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
1210985 TGCCAATGTGCTGATTCAAGGCTAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1211050 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
1211082 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211147 CAAGGCCAACTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
1211179 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211244 CAAGGCCAGCTATATTGGAGTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* * *
1211276 TGCCAATGTGCTGATTCAAGGCCAGCTATATTGGACTTAGAGATGAAGGTGCCAATATGTTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211341 CAAGGCTAGCTATATTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
1211373 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
**
1211438 CAAGGCCAGCTACGTTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* * *
1211470 TGCCAATGTGCTTATTCAAGGCCAGCTACATTGGATTTAAAGGTGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211535 CAAGGCCAGCTATATTGGACTTAAAGATGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* * * * * *
1211567 TGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTTAAAGGTGAAGATGCCAATGTGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211632 CAAGGCCAGCTACATTGGACTTAAA---GA--
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
*
1211659 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1211724 CAAGGCCAGCTATATTGGACTTAAAGATGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
1211756 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1211798 GTATGTGCTG
Statistics
Matches: 934, Mismatches: 67, Indels: 16
0.92 0.07 0.02
Matches are distributed among these distances:
92 82 0.09
94 2 0.00
95 2 0.00
97 811 0.87
98 4 0.00
100 4 0.00
101 29 0.03
ACGTcount: A:0.30, C:0.17, G:0.27, T:0.27
Consensus pattern (97 bp):
TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
Found at i:1212044 original size:35 final size:34
Alignment explanation
Indices: 1211877--1212335 Score: 481
Period size: 35 Copynumber: 13.8 Consensus size: 34
1211867 AAAGGATAAA
* *
1211877 GATGCCACGGAGTTGTGGACTTAGAAGGAA-AAA
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * * *
1211910 GAGTGCCACGAAGTTGTGGGCTT-AAATGAAAAAG
1 GA-TGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1211944 G-TGCCACGGAGTTGTGGACTTAAAA-GAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
*
1211976 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1212010 GATGCCACGGAGTTGTGGACTTAAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTT-AAAAGGAACAAG
1212045 GATGCCACGGAGTTGTGGACTTAAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTT-AAAAGGAACAAG
*
1212080 GATGCCACGGAGTTGTGGACTTAAAAGGAATAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
*
1212114 GATGCCACGGAGTTGTGGACTTGAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * *
1212148 GATGCCACAGAGTTGTGGGCTTAAAAGGGAAAAATG
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAACAA-G
*
1212184 G-TGCCACGGAGTTGTGGACTCAAAA-G-----G
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * *
1212211 G-TGCCACAGAGTTGTGGGCTTAAAAGGGAAAAATG
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAACAA-G
* *
1212246 G-TGCCACAGAGTCGTGGACTTAAAA-G-----G
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * * *
1212273 G-TGTCACAGAGTTGTGGGCTTTAAAAGAGAAAAAG
1 GATGCCACGGAGTTGTGGAC-TTAAAAG-GAACAAG
* *
1212308 GGTGCCACGGAGTCGTGGACTTAAAAGG
1 GATGCCACGGAGTTGTGGACTTAAAAGG
1212336 GTGCCACGGA
Statistics
Matches: 370, Mismatches: 31, Indels: 49
0.82 0.07 0.11
Matches are distributed among these distances:
27 40 0.11
28 6 0.02
29 1 0.00
30 1 0.00
32 25 0.07
33 36 0.10
34 116 0.31
35 129 0.35
36 16 0.04
ACGTcount: A:0.34, C:0.14, G:0.34, T:0.19
Consensus pattern (34 bp):
GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
Found at i:1212062 original size:69 final size:68
Alignment explanation
Indices: 1211877--1212335 Score: 499
Period size: 69 Copynumber: 6.9 Consensus size: 68
1211867 AAAGGATAAA
* * * *
1211877 GATGCCACGGAGTTGTGGACTTAGAAGGAAAAA-GAGTGCCACGAAGTTGTGGGCTT-AAATGAA
1 GATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGA-TGCCACGGAGTTGTGGACTTAAAAGGAA
*
1211940 AAAG
65 CAAG
* *
1211944 G-TGCCACGGAGTTGTGGACTTAAAA-GAACAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAAC
1 GATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGAAC
1212007 AAG
66 AAG
*
1212010 GATGCCACGGAGTTGTGGACTTAAAAAGGAACAAGGATGCCACGGAGTTGTGGACTTAAAAAGGA
1 GATGCCACGGAGTTGTGGACTT-AAAAGGAAAAAGGATGCCACGGAGTTGTGGACTT-AAAAGGA
1212075 ACAAG
64 ACAAG
* *
1212080 GATGCCACGGAGTTGTGGACTTAAAAGGAATAAGGATGCCACGGAGTTGTGGACTTGAAAGGAAC
1 GATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGAAC
1212145 AAG
66 AAG
* * *
1212148 GATGCCACAGAGTTGTGGGCTTAAAAGGGAAAAATGG-TGCCACGGAGTTGTGGACTCAAAA-G-
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAAAAA-GGATGCCACGGAGTTGTGGACTTAAAAGGA
1212210 ----G
64 ACAAG
* * * *
1212211 G-TGCCACAGAGTTGTGGGCTTAAAAGGGAAAAATGG-TGCCACAGAGTCGTGGACTTAAAA-G-
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAAAAA-GGATGCCACGGAGTTGTGGACTTAAAAGGA
1212272 ----G
64 ACAAG
* * * * *
1212273 G-TGTCACAGAGTTGTGGGCTTTAAAAGAGAAAAAGGGTGCCACGGAGTCGTGGACTTAAAAGG
1 GATGCCACGGAGTTGTGGAC-TTAAAAG-GAAAAAGGATGCCACGGAGTTGTGGACTTAAAAGG
1212336 GTGCCACGGA
Statistics
Matches: 360, Mismatches: 20, Indels: 27
0.88 0.05 0.07
Matches are distributed among these distances:
62 79 0.22
63 37 0.10
64 1 0.00
65 23 0.06
66 34 0.09
67 21 0.06
68 40 0.11
69 89 0.25
70 36 0.10
ACGTcount: A:0.34, C:0.14, G:0.34, T:0.19
Consensus pattern (68 bp):
GATGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGATGCCACGGAGTTGTGGACTTAAAAGGAAC
AAG
Found at i:1212216 original size:27 final size:27
Alignment explanation
Indices: 1212178--1212289 Score: 89
Period size: 27 Copynumber: 3.9 Consensus size: 27
1212168 TTAAAAGGGA
* *
1212178 AAAATGGTGCCACGGAGTTGTGGACTC
1 AAAAGGGTGCCACAGAGTTGTGGACTC
* *
1212205 AAAAGGGTGCCACAGAGTTGTGGGCTT
1 AAAAGGGTGCCACAGAGTTGTGGACTC
* *
1212232 AAAAGGGAAAAATGGTGCCACAGAGTCGTGGACTT
1 AAAA--G------GGTGCCACAGAGTTGTGGACTC
*
1212267 AAAAGGGTGTCACAGAGTTGTGG
1 AAAAGGGTGCCACAGAGTTGTGG
1212290 GCTTTAAAAG
Statistics
Matches: 69, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
27 43 0.62
29 1 0.01
33 1 0.01
35 24 0.35
ACGTcount: A:0.30, C:0.14, G:0.35, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTTGTGGACTC
Found at i:1212247 original size:62 final size:63
Alignment explanation
Indices: 1212145--1212361 Score: 348
Period size: 62 Copynumber: 3.5 Consensus size: 63
1212135 TGAAAGGAAC
* * *
1212145 AAGGATGCCACAGAGTTGTGGGC-TTAAAAGGGAAAAATGGTGCCACGGAGTTGTGGACTCAA
1 AAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGAAAAATGGTGCCACGGAGTCGTGGACTTAA
*
1212207 AAGGGTGCCACAGAGTTGTGGGC-TTAAAAGGGAAAAATGGTGCCACAGAGTCGTGGACTTAA
1 AAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGAAAAATGGTGCCACGGAGTCGTGGACTTAA
* * *
1212269 AAGGGTGTCACAGAGTTGTGGGCTTTAAAAGAGAAAAAGGGTGCCACGGAGTCGTGGACTTAA
1 AAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGAAAAATGGTGCCACGGAGTCGTGGACTTAA
*
1212332 AAGGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAGGGTGCCACAGAGTTGTGGGCTTTAAAA
1212362 AGATTAAAGT
Statistics
Matches: 144, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
62 80 0.56
63 64 0.44
ACGTcount: A:0.31, C:0.14, G:0.35, T:0.20
Consensus pattern (63 bp):
AAGGGTGCCACAGAGTTGTGGGCTTTAAAAGGGAAAAATGGTGCCACGGAGTCGTGGACTTAA
Found at i:1212297 original size:28 final size:27
Alignment explanation
Indices: 1212240--1212361 Score: 82
Period size: 27 Copynumber: 4.1 Consensus size: 27
1212230 TTAAAAGGGA
*
1212240 AAAATGGTGCCACAGAGTCGTGGACTT
1 AAAAGGGTGCCACAGAGTCGTGGACTT
* * *
1212267 AAAAGGGTGTCACAGAGTTGTGGGCTTT
1 AAAAGGGTGCCACAGAGTCGTGGAC-TT
*
1212295 AAAAGAGAAAAAGGGTGCCACGGAGTCGTGGACTT
1 --------AAAAGGGTGCCACAGAGTCGTGGACTT
* * *
1212330 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACAGAGTCGTGGAC-TT
1212358 AAAA
1 AAAA
1212362 AGATTAAAGT
Statistics
Matches: 75, Mismatches: 10, Indels: 19
0.72 0.10 0.18
Matches are distributed among these distances:
27 44 0.59
28 8 0.11
35 2 0.03
36 21 0.28
ACGTcount: A:0.31, C:0.14, G:0.34, T:0.21
Consensus pattern (27 bp):
AAAAGGGTGCCACAGAGTCGTGGACTT
Found at i:1212341 original size:27 final size:28
Alignment explanation
Indices: 1212303--1212361 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
1212293 TTAAAAGAGA
1212303 AAAAGGGTGCCACGGAGTCGTGGAC-TT
1 AAAAGGGTGCCACGGAGTCGTGGACTTT
* *
1212330 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGGAGTCGTGGACTTT
1212358 AAAA
1 AAAA
1212362 AGATTAAAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 23 0.79
28 6 0.21
ACGTcount: A:0.29, C:0.15, G:0.36, T:0.20
Consensus pattern (28 bp):
AAAAGGGTGCCACGGAGTCGTGGACTTT
Found at i:1212423 original size:31 final size:31
Alignment explanation
Indices: 1212367--1212610 Score: 267
Period size: 31 Copynumber: 8.0 Consensus size: 31
1212357 TAAAAAGATT
* *
1212367 AAAG-TGCCAC-GAAGTTGTGGGCTTTGAAGA
1 AAAGATGCCACTG-AGTCGTGGACTTTGAAGA
1212397 AAAGATGCCACT-ATGTCGTGGACTTTG--GA
1 AAAGATGCCACTGA-GTCGTGGACTTTGAAGA
* *
1212426 AAGAGATGCCACTGAGTCATGGACTTTG-GGA
1 AA-AGATGCCACTGAGTCGTGGACTTTGAAGA
*
1212457 CAAA-ATGCCACTGAGTCGTGGACTTTGAGGA
1 -AAAGATGCCACTGAGTCGTGGACTTTGAAGA
1212488 AAAGATGCCACTGAGTCGTGGACTTTGAA-A
1 AAAGATGCCACTGAGTCGTGGACTTTGAAGA
* * *
1212518 AGAGATTGCCACTGAGTTGTGGACTTTGGAGA
1 AAAGA-TGCCACTGAGTCGTGGACTTTGAAGA
* *
1212550 AAAAATGCCACTGAGTCGTGGACTTTG-GGA
1 AAAGATGCCACTGAGTCGTGGACTTTGAAGA
1212580 CAAA-ATGCCACTGAGTCGTGGACTTT-AAGA
1 -AAAGATGCCACTGAGTCGTGGACTTTGAAGA
1212610 A
1 A
1212611 GGTATTTGAA
Statistics
Matches: 188, Mismatches: 13, Indels: 27
0.82 0.06 0.12
Matches are distributed among these distances:
29 5 0.03
30 83 0.44
31 94 0.50
32 6 0.03
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (31 bp):
AAAGATGCCACTGAGTCGTGGACTTTGAAGA
Found at i:1212435 original size:30 final size:30
Alignment explanation
Indices: 1212395--1212605 Score: 279
Period size: 31 Copynumber: 6.9 Consensus size: 30
1212385 GGGCTTTGAA
1212395 GAAAAGATGCCACT-ATGTCGTGGACTTT-G
1 GAAAAGATGCCACTGA-GTCGTGGACTTTGG
*
1212424 GAAAGAGATGCCACTGAGTCATGGACTTTGG
1 GAAA-AGATGCCACTGAGTCGTGGACTTTGG
1212455 GACAAA-ATGCCACTGAGTCGTGGACTTTGAG
1 GA-AAAGATGCCACTGAGTCGTGGACTTTG-G
1212486 GAAAAGATGCCACTGAGTCGTGGACTTT-G
1 GAAAAGATGCCACTGAGTCGTGGACTTTGG
* *
1212515 AAAAGAGATTGCCACTGAGTTGTGGACTTTGG
1 GAAA-AGA-TGCCACTGAGTCGTGGACTTTGG
*
1212547 AGAAAAAATGCCACTGAGTCGTGGACTTTGG
1 -GAAAAGATGCCACTGAGTCGTGGACTTTGG
1212578 GACAAA-ATGCCACTGAGTCGTGGACTTT
1 GA-AAAGATGCCACTGAGTCGTGGACTTT
1212606 AAGAAGGTAT
Statistics
Matches: 164, Mismatches: 7, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
29 8 0.05
30 73 0.45
31 75 0.46
32 5 0.03
33 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (30 bp):
GAAAAGATGCCACTGAGTCGTGGACTTTGG
Found at i:1212741 original size:16 final size:17
Alignment explanation
Indices: 1212710--1212747 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
1212700 GATGCAAATA
* *
1212710 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
1212727 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
1212743 ATGAT
1 ATGAT
1212748 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:1213943 original size:20 final size:21
Alignment explanation
Indices: 1213905--1213943 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
1213895 CCTTTACACT
**
1213905 TTTTTGTGTGTTTTTTTTTTG
1 TTTTTGTGTGTTTACTTTTTG
1213926 TTTTT-TGTGTTTACTTTT
1 TTTTTGTGTGTTTACTTTT
1213944 GATTTTTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 11 0.69
21 5 0.31
ACGTcount: A:0.03, C:0.03, G:0.15, T:0.79
Consensus pattern (21 bp):
TTTTTGTGTGTTTACTTTTTG
Found at i:1220902 original size:52 final size:52
Alignment explanation
Indices: 1220827--1220952 Score: 234
Period size: 52 Copynumber: 2.4 Consensus size: 52
1220817 AATATGAAAT
*
1220827 TTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1220879 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
*
1220931 TTTGCTTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
1220953 AAGATCAGTG
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
Found at i:1220963 original size:52 final size:52
Alignment explanation
Indices: 1220827--1220969 Score: 207
Period size: 52 Copynumber: 2.8 Consensus size: 52
1220817 AATATGAAAT
* **
1220827 TTTGCCTACATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
**
1220879 TTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
* *
1220931 TTTGCTTGCATGTATCGATACA-AAGATCAGTGTATCGAT
1 TTTGCCTGCATGTATCGATACATAACAT-AGTGTATCGAT
1220970 CCAATGTATC
Statistics
Matches: 85, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
51 2 0.02
52 83 0.98
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGGGCAAA
Found at i:1221050 original size:19 final size:19
Alignment explanation
Indices: 1221026--1221079 Score: 81
Period size: 19 Copynumber: 2.8 Consensus size: 19
1221016 CAGTAGCTAA
1221026 TTATGTATCGATACAACAC
1 TTATGTATCGATACAACAC
* *
1221045 TTATGTGTCGATACAGCAC
1 TTATGTATCGATACAACAC
*
1221064 CTATGTATCGATACAA
1 TTATGTATCGATACAA
1221080 ATCGTTGAAT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.31
Consensus pattern (19 bp):
TTATGTATCGATACAACAC
Found at i:1222050 original size:48 final size:48
Alignment explanation
Indices: 1221921--1222493 Score: 781
Period size: 48 Copynumber: 11.8 Consensus size: 48
1221911 GATGAAGGCA
* * *
1221921 CCAATATGCTGAGTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
* *
1221970 CCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
* * * *
1222019 CCAA-ATGCTAATTCAAGGCCAGCTATGTTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTG
* * * *
1222066 CCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGGTGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
* * *
1222115 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGATGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTG
* * *
1222163 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
* * *
1222212 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTG
* * *
1222260 CTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
* *
1222309 CCAATATGCTGATTCAAGGCCAAG-TATATTGGACTTAAAGGTGAGGTG
1 CCAATATGCTGATTCAAGGCC-AGCTATATTGGACTTAAAGATAAGGTG
* * *
1222357 CCAACATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGAT-AAGGTG
*
1222406 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAGGTG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTG
*
1222454 CCAATACGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1222494 GTATGTGCTG
Statistics
Matches: 464, Mismatches: 53, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
47 11 0.02
48 232 0.50
49 219 0.47
50 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (48 bp):
CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATAAGGTG
Found at i:1222051 original size:97 final size:97
Alignment explanation
Indices: 1221866--1222493 Score: 918
Period size: 97 Copynumber: 6.4 Consensus size: 97
1221856 ATGAGAAGAA
* * * * ** **
1221866 TGCCAATGTGCTGATTCAAAGCCAACGACATTGGGTTTTAGAAATGATGAAGGCACCAATATGCT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATT-GGACTT--AAA-GATGAAGGTGCCAATATGCT
* * * *
1221931 GAGTCAAGGCCAACGATATTGGACTTAAAGATGAAGG
62 GATTCAAGGCCAGCTATATTGGACTTAAAGGTG-AGG
* * *
1221968 TGCCAATATGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA-ATGCTAATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1222032 CAAGGCCAGCTATGTTGGACTTAAAGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* * *
1222064 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGGTGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1222129 CAAGGCCAGCTATATTGGACTTAAAGGTGATG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
1222161 TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAGGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1222226 CAAGGCCAGCTATATTGGACTTAATGGTGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
1222258 TGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
1222323 CAAGGCCAAG-TATATTGGACTTAAAGGTGAGG
66 CAAGGCC-AGCTATATTGGACTTAAAGGTGAGG
* *
1222355 TGCCAACATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATT
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
*
1222420 CAAGGCCAGCTATATTGGACTTAAAGATGAGG
66 CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
* *
1222452 TGCCAATACGCTGATTCAAGGCCAGCTATATTGGACTTAAAG
1 TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAG
1222494 GTATGTGCTG
Statistics
Matches: 482, Mismatches: 41, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
96 55 0.11
97 380 0.79
98 13 0.03
99 3 0.01
101 4 0.01
102 27 0.06
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (97 bp):
TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
CAAGGCCAGCTATATTGGACTTAAAGGTGAGG
Found at i:1222184 original size:145 final size:145
Alignment explanation
Indices: 1221921--1222536 Score: 862
Period size: 145 Copynumber: 4.3 Consensus size: 145
1221911 GATGAAGGCA
* * * * *
1221921 CCAATATGCTGAGTCAAGGCCAACGATATTGGACTTAAAGATGAAGGTGCCAATATGCTGAGTCA
1 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * *
1221986 AGGCCAGCTACATTGGACTTAAAGATAAAGGTGCCAA-ATGCTAATTCAAGGCCAGCTATGTTGG
66 AGGCCAGCTACATTGGACTTAAAGAT-GAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGG
1222050 ACTTAAAGGTGAGGTG
130 ACTTAAAGGTGAGGTG
* * *
1222066 CCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGGTGAAGGTGCCAATATGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* * * * *
1222131 AGGCCAGCTATATTGGACTTAAAGGTGATGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGA
66 AGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
1222196 CTT-AAGGATGAAGGTG
131 CTTAAAGG-TG-AGGTG
* * * * *
1222212 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAATGGTG-AGGTGCTAATGTGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
1222276 AGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAAG-TATATTG
66 AGGCCAGCTACATTGGACTTAAAGATG-AGGTGCCAATATGCTGATTCAAGGCC-AGCTATATTG
1222340 GACTTAAAGGTGAGGTG
129 GACTTAAAGGTGAGGTG
* *
1222357 CCAACATGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
* *
1222422 AGGCCAGCTATATTGGACTTAAAGATGAGGTGCCAATACGCTGATTCAAGGCCAGCTATATTGGA
66 AGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
1222487 CTTAAAGGT-A--TG
131 CTTAAAGGTGAGGTG
*
1222499 ------TGCTGATTCAAGGCCAGCTACATTGGACTTGAAGATGA
1 CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGA
1222537 TGCCACCAAC
Statistics
Matches: 425, Mismatches: 38, Indels: 25
0.87 0.08 0.05
Matches are distributed among these distances:
136 36 0.08
142 2 0.00
144 15 0.04
145 240 0.56
146 126 0.30
147 6 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (145 bp):
CCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCA
AGGCCAGCTACATTGGACTTAAAGATGAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGA
CTTAAAGGTGAGGTG
Found at i:1222745 original size:35 final size:34
Alignment explanation
Indices: 1222573--1222969 Score: 454
Period size: 34 Copynumber: 11.8 Consensus size: 34
1222563 AAAGGAGAAA
* * *
1222573 GATGCCACGAAGTTGTGGACTTAGAAGGAA-AAA
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * * * *
1222606 AAGTACCACGAAGTTGTGGGCTTAAAA-GAAAAAG
1 GA-TGCCACGGAGTTGTGGACTTAAAAGGAACAAG
*
1222640 G-TGCCATGGAGTTGTGGACTTAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
*
1222673 GGTGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
1222707 GATGCCACGGAGTTGTGGACTTAAAACGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAACAAG
* *
1222742 GATGCCACGGGGTTGTAGACTTAAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTT-AAAAGGAACAAG
*
1222777 GATGCCACGGAGTTGTGGACTTAAAAGGAATAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
*
1222811 GATGCCACAGAGTTGTGGACTTAAAAGGAACAAG
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* * *
1222845 GATGCCACAGAGTTGTGGGCTTAAAAGGGAAAAAG
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAACAAG
* *
1222880 GGTGCCACGGAGTTGTGGACTCAAAA-G-----G
1 GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
* *
1222908 G-TGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAG
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAACAAG
* * * *
1222942 GGTGCCGCGAAGTCGTGGACTTAAAAGG
1 GATGCCACGGAGTTGTGGACTTAAAAGG
1222970 GTGCCACGGA
Statistics
Matches: 317, Mismatches: 32, Indels: 29
0.84 0.08 0.08
Matches are distributed among these distances:
27 22 0.07
28 2 0.01
29 1 0.00
32 20 0.06
33 12 0.04
34 151 0.48
35 105 0.33
36 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (34 bp):
GATGCCACGGAGTTGTGGACTTAAAAGGAACAAG
Found at i:1222790 original size:138 final size:132
Alignment explanation
Indices: 1222573--1222969 Score: 469
Period size: 138 Copynumber: 3.0 Consensus size: 132
1222563 AAAGGAGAAA
* * ** * * *
1222573 GATGCCACGAAGTTGTGGACTTAGAAGGAAAAAAAGTACCACGAAGTTGTGGGCTTAAAAGAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAGGAAAAGGA-TGCCACGGAGTTGTGGACTTAAAAG-AAA
* *
1222638 AGGTGCCATGGAGTTGTGGACTTAAAAGGAACAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAA
64 AGGTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAA
1222703 CAAG
129 CAAG
* *
1222707 GATGCCACGGAGTTGTGGACTTAAAACGGAACAAGGATGCCACGGGGTTGTAGACTTAAAAAGGA
1 GATGCCACGGAGTTGTGGACTTAAAA-GGAA-AAGGATGCCACGGAGTTGTGGACTT-AAAA-GA
* * *
1222772 ACAAGGATGCCACGGAGTTGTGGACTTAAAAGGAATAAGGATGCCACAGAGTTGTGGACTTAAAA
62 A-AAGG-TGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGGTGCCACGGAGTTGTGGACTTAAAA
1222837 GGAACAAG
125 GGAACAAG
* * * *
1222845 GATGCCACAGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGGAGTTGTGGACTCAAAAG---
1 GATGCCACGGAGTTGTGGACTTAAAA-GG-AAAAGGATGCCACGGAGTTGTGGACTTAAAAGAAA
* * * *
1222907 -GGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCGCGAAGTCGTGGACTTAAAAGG
64 AGGTGCCACGGAGTTGTGGACTTAAAA-GGAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGG
1222970 GTGCCACGGA
Statistics
Matches: 228, Mismatches: 27, Indels: 19
0.83 0.10 0.07
Matches are distributed among these distances:
130 23 0.10
131 32 0.14
134 24 0.11
135 19 0.08
136 10 0.04
137 9 0.04
138 109 0.48
139 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.33, T:0.18
Consensus pattern (132 bp):
GATGCCACGGAGTTGTGGACTTAAAAGGAAAAGGATGCCACGGAGTTGTGGACTTAAAAGAAAAG
GTGCCACGGAGTTGTGGACTTAAAAGGAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGAACA
AG
Found at i:1222913 original size:27 final size:27
Alignment explanation
Indices: 1222875--1222935 Score: 104
Period size: 27 Copynumber: 2.3 Consensus size: 27
1222865 TTAAAAGGGA
1222875 AAAAGGGTGCCACGGAGTTGTGGACTC
1 AAAAGGGTGCCACGGAGTTGTGGACTC
* *
1222902 AAAAGGGTGCCACGGAGTTGTGGGCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTC
1222929 AAAAGGG
1 AAAAGGG
1222936 AAAAAGGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.28, C:0.15, G:0.39, T:0.18
Consensus pattern (27 bp):
AAAAGGGTGCCACGGAGTTGTGGACTC
Found at i:1222944 original size:62 final size:62
Alignment explanation
Indices: 1222842--1222995 Score: 245
Period size: 62 Copynumber: 2.5 Consensus size: 62
1222832 TAAAAGGAAC
* * * *
1222842 AAGGATGCCACAGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGGAGTTGTGGACTCAA
1 AAGGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGAAGTCGTGGACTCAA
* *
1222904 AAGGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCGCGAAGTCGTGGACTTAA
1 AAGGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGAAGTCGTGGACTCAA
1222966 AAGGGTGCCACGGAGTTGTGGGCTTTAAAA
1 AAGGGTGCCACGGAGTTGTGGGC-TTAAAA
1222996 AAAGTGAGGT
Statistics
Matches: 85, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
62 79 0.93
63 6 0.07
ACGTcount: A:0.30, C:0.14, G:0.37, T:0.19
Consensus pattern (62 bp):
AAGGGTGCCACGGAGTTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGAAGTCGTGGACTCAA
Found at i:1222970 original size:35 final size:35
Alignment explanation
Indices: 1222902--1222970 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
1222892 TTGTGGACTC
* * *
1222902 AAAAGGGTGCCACGGAGTTGTGGGCTTAAAAGGGA
1 AAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGGA
*
1222937 AAAAGGGTGCCGCGAAGTCGTGGACTTAAAAGGG
1 AAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGG
1222971 TGCCACGGAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.32, C:0.13, G:0.39, T:0.16
Consensus pattern (35 bp):
AAAAGGGTGCCACGAAGTCGTGGACTTAAAAGGGA
Found at i:1222986 original size:27 final size:28
Alignment explanation
Indices: 1222937--1222995 Score: 75
Period size: 27 Copynumber: 2.1 Consensus size: 28
1222927 TTAAAAGGGA
*
1222937 AAAAGGGTGCCGCGAAGTCGTGGAC-TT
1 AAAAGGGTGCCACGAAGTCGTGGACTTT
* * *
1222964 AAAAGGGTGCCACGGAGTTGTGGGCTTT
1 AAAAGGGTGCCACGAAGTCGTGGACTTT
1222992 AAAA
1 AAAA
1222996 AAAGTGAGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 21 0.78
28 6 0.22
ACGTcount: A:0.29, C:0.15, G:0.36, T:0.20
Consensus pattern (28 bp):
AAAAGGGTGCCACGAAGTCGTGGACTTT
Found at i:1223057 original size:31 final size:30
Alignment explanation
Indices: 1223017--1223398 Score: 384
Period size: 31 Copynumber: 12.5 Consensus size: 30
1223007 CCACGAAGTT
*
1223017 GTGGGCTTTGAAGAAAATATGCCACTGAGTC
1 GTGGACTTTGAAGAAAA-ATGCCACTGAGTC
* *
1223048 ATGGACTTTG--GAAAGAGATGCCCCTGAGTC
1 GTGGACTTTGAAGAAA-A-ATGCCACTGAGTC
* *
1223078 ATGGACTTTG-GGACAAAATGCCACTGAGTC
1 GTGGACTTTGAAGA-AAAATGCCACTGAGTC
* *
1223108 ATGGACTTTGAAGAAAAGATACCACTGAGTC
1 GTGGACTTTGAAGAAAA-ATGCCACTGAGTC
* * *
1223139 GTGAACTTTGAA-AAGAGATTGCCACTGAGTT
1 GTGGACTTTGAAGAA-A-AATGCCACTGAGTC
1223170 GTGGACTTTGAAGAAAAAATGCCACTGAGTC
1 GTGGACTTTGAAG-AAAAATGCCACTGAGTC
*
1223201 GTGGACTTTG-GGATAAAATGCCACTGAGTC
1 GTGGACTTTGAAGA-AAAATGCCACTGAGTC
* * *
1223231 ATGGACTTTGAGGAAAAGATGCCACTAAGTC
1 GTGGACTTTGAAGAAAA-ATGCCACTGAGTC
* *
1223262 GTGGACTTTGAA-AAGAGATTGCCACTGAGTT
1 GTGGACTTTGAAGAA-A-AATGCCACTGAGTC
* *
1223293 GTGGACTTTGGAGAAAAAATGCCACTGAGTT
1 GTGGACTTTGAAG-AAAAATGCCACTGAGTC
*
1223324 GTGGACTTTGGAGAAAAAATGCCACTGAGTC
1 GTGGACTTTGAAG-AAAAATGCCACTGAGTC
* *
1223355 GTGGACTTTG-GGACAAAATGCCACTAAGTC
1 GTGGACTTTGAAGA-AAAATGCCACTGAGTC
1223385 GTGGACTTT-AAGAA
1 GTGGACTTTGAAGAA
1223399 GGTATTTGAA
Statistics
Matches: 304, Mismatches: 29, Indels: 38
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.02
30 108 0.36
31 179 0.59
32 6 0.02
33 4 0.01
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (30 bp):
GTGGACTTTGAAGAAAAATGCCACTGAGTC
Found at i:1223240 original size:123 final size:122
Alignment explanation
Indices: 1223036--1223393 Score: 506
Period size: 123 Copynumber: 2.9 Consensus size: 122
1223026 GAAGAAAATA
** * * * *
1223036 TGCCACTGAGTCATGGACTTTG-GAAAGAGATGCCCCTGAGTCATGGACTTTGGGACAAAATGCC
1 TGCCACTGAGTTGTGGACTTTGAGAAA-AAATGCCACTGAGTCGTGGACTTTGGGAAAAAATGCC
*
1223100 ACTGAGTCATGGACTTTGAAGAAAAGATACCACTGAGTCGTGAACTTTGAAAAGAGAT
65 ACTGAGTCATGGACTTTGAAGAAAAGATACCACTAAGTCGTGAACTTTGAAAAGAGAT
*
1223158 TGCCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGATAAAATGCC
1 TGCCACTGAGTTGTGGACTTTG-AGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAAAAATGCC
* * *
1223223 ACTGAGTCATGGACTTTGAGGAAAAGATGCCACTAAGTCGTGGACTTTGAAAAGAGAT
65 ACTGAGTCATGGACTTTGAAGAAAAGATACCACTAAGTCGTGAACTTTGAAAAGAGAT
*
1223281 TGCCACTGAGTTGTGGACTTTGGAGAAAAAATGCCACTGAGTTGTGGACTTTGGAGAAAAAATGC
1 TGCCACTGAGTTGTGGACTTT-GAGAAAAAATGCCACTGAGTCGTGGACTTTGG-GAAAAAATGC
* * * *
1223346 CACTGAGTCGTGGACTTTG-GGACAAA-ATGCCACTAAGTCGTGGACTTT
64 CACTGAGTCATGGACTTTGAAGA-AAAGATACCACTAAGTCGTGAACTTT
1223394 AAGAAGGTAT
Statistics
Matches: 218, Mismatches: 13, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
122 20 0.09
123 163 0.75
124 35 0.16
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (122 bp):
TGCCACTGAGTTGTGGACTTTGAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAAAAATGCCA
CTGAGTCATGGACTTTGAAGAAAAGATACCACTAAGTCGTGAACTTTGAAAAGAGAT
Found at i:1223339 original size:154 final size:152
Alignment explanation
Indices: 1223005--1223393 Score: 520
Period size: 154 Copynumber: 2.5 Consensus size: 152
1222995 AAAAGTGAGG
* * *
1223005 TGCCAC-GAAGTTGTGGGCTTTGAAGAAAATATGCCACTGAGTCATGGACTTT-GGAAAGAGATG
1 TGCCACTG-AGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAA-A-ATG
* *
1223068 CCCCTGAGTCATGGACTTTGGGACAAAATGCCACTGAGTCATGGACTTTGAAGAAAAGATACCAC
63 CCACTGAGTCATGGACTTTGGGACAAAATGCCACTAAGTCATGGACTTTGAAGAAAAGATACCAC
*
1223133 TGAGTCGTGAACTTTGAAAAGAGAT
128 TGAGTCGTGAACTTTGAAAAGAGAA
1223158 TGCCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGATAAAATGCC
1 TGCCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGA-AAAATGCC
* * *
1223223 ACTGAGTCATGGACTTTGAGGA-AAAGATGCCACTAAGTCGTGGACTTTGAA-AAGAGATTGCCA
65 ACTGAGTCATGGACTTTG-GGACAAA-ATGCCACTAAGTCATGGACTTTGAAGAAAAGA-TACCA
* *
1223286 CTGAGTTGTGGACTTTGGAGAAA-A-AA
127 CTGAGTCGTGAACTTT-GA-AAAGAGAA
*
1223312 TGCCACTGAGTTGTGGACTTTGGAGAAAAAATGCCACTGAGTCGTGGACTTTGGGACAAAATGCC
1 TGCCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGA-AAAATGCC
* *
1223377 ACTAAGTCGTGGACTTT
65 ACTGAGTCATGGACTTT
1223394 AAGAAGGTAT
Statistics
Matches: 213, Mismatches: 15, Indels: 15
0.88 0.06 0.06
Matches are distributed among these distances:
153 77 0.36
154 128 0.60
155 5 0.02
156 3 0.01
ACGTcount: A:0.31, C:0.16, G:0.28, T:0.25
Consensus pattern (152 bp):
TGCCACTGAGTTGTGGACTTTGAAGAAAAAATGCCACTGAGTCGTGGACTTTGGGAAAAATGCCA
CTGAGTCATGGACTTTGGGACAAAATGCCACTAAGTCATGGACTTTGAAGAAAAGATACCACTGA
GTCGTGAACTTTGAAAAGAGAA
Found at i:1223529 original size:16 final size:17
Alignment explanation
Indices: 1223498--1223535 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
1223488 GATGCAAATA
* *
1223498 ATGATGTTATTGATGTT
1 ATGATGTCATTGATGTC
1223515 ATGATGTCA-TGATGTC
1 ATGATGTCATTGATGTC
1223531 ATGAT
1 ATGAT
1223536 TACAGCACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.26, C:0.05, G:0.24, T:0.45
Consensus pattern (17 bp):
ATGATGTCATTGATGTC
Found at i:1223814 original size:13 final size:13
Alignment explanation
Indices: 1223796--1223820 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1223786 CAACATTTTG
1223796 TGTATCGATACAA
1 TGTATCGATACAA
1223809 TGTATCGATACA
1 TGTATCGATACA
1223821 TGGGTTACTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1224398 original size:19 final size:18
Alignment explanation
Indices: 1224369--1224431 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 18
1224359 TTGTATCGAT
*
1224369 ACATTGCATCGATACATG
1 ACATTGTATCGATACATG
1224387 ATCATTGTATCGATACATGG
1 A-CATTGTATCGATACAT-G
1224407 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
*
1224426 AAATTG
1 ACATTG
1224432 GCAGTAGCTA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 5 0.12
19 18 0.45
20 17 0.43
ACGTcount: A:0.35, C:0.16, G:0.17, T:0.32
Consensus pattern (18 bp):
ACATTGTATCGATACATG
Found at i:1224400 original size:32 final size:33
Alignment explanation
Indices: 1224343--1224404 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
1224333 ACCCAGATGT
* *
1224343 ATCGATACATTATGCTTTGTATCGATACATTGC
1 ATCGATACATGATGCATTGTATCGATACATTGC
1224376 ATCGATACATGAT-CATTGTATCGATACAT
1 ATCGATACATGATGCATTGTATCGATACAT
1224405 GGACAATTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 15 0.56
33 12 0.44
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (33 bp):
ATCGATACATGATGCATTGTATCGATACATTGC
Found at i:1224415 original size:20 final size:20
Alignment explanation
Indices: 1224370--1224425 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
1224360 TGTATCGATA
*
1224370 CATTGCATCGATACAT-GAT
1 CATTGTATCGATACATGGAT
1224389 CATTGTATCGATACATGGA-
1 CATTGTATCGATACATGGAT
1224408 CAATTGTATCGATACATG
1 C-ATTGTATCGATACATG
1224426 AAATTGGCAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
19 16 0.47
20 18 0.53
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (20 bp):
CATTGTATCGATACATGGAT
Found at i:1224488 original size:13 final size:13
Alignment explanation
Indices: 1224470--1224522 Score: 64
Period size: 13 Copynumber: 4.5 Consensus size: 13
1224460 CGATACATGG
1224470 TACATTGTATCGA
1 TACATTGTATCGA
1224483 TACATTGTATCGA
1 TACATTGTATCGA
1224496 TACA-TG-AT-G-
1 TACATTGTATCGA
1224505 -A-ATTGTATCGA
1 TACATTGTATCGA
1224516 TACATTG
1 TACATTG
1224523 CTTGCAACGG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
7 1 0.03
8 3 0.09
9 2 0.06
10 2 0.06
11 2 0.06
12 3 0.09
13 21 0.62
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (13 bp):
TACATTGTATCGA
Found at i:1224496 original size:33 final size:33
Alignment explanation
Indices: 1224454--1224522 Score: 113
Period size: 33 Copynumber: 2.1 Consensus size: 33
1224444 ATACCACTGT
*
1224454 TTGTATCGATACATGGT-ACATTGTATCGATACA
1 TTGTATCGATACATGATGA-ATTGTATCGATACA
1224487 TTGTATCGATACATGATGAATTGTATCGATACA
1 TTGTATCGATACATGATGAATTGTATCGATACA
1224520 TTG
1 TTG
1224523 CTTGCAACGG
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
33 33 0.97
34 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.19, T:0.38
Consensus pattern (33 bp):
TTGTATCGATACATGATGAATTGTATCGATACA
Found at i:1227491 original size:33 final size:33
Alignment explanation
Indices: 1227432--1227494 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1227422 TACCACTATT
* * *
1227432 TGTATCGATACATAGCGCATTGTATTGATATAA
1 TGTATCGATACATAGAGAATTATATTGATATAA
1227465 TGTATCGATACAT-GAAGAATTATATTGATA
1 TGTATCGATACATAG-AGAATTATATTGATA
1227495 CATTGTCCCA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
32 1 0.04
33 25 0.96
ACGTcount: A:0.37, C:0.10, G:0.17, T:0.37
Consensus pattern (33 bp):
TGTATCGATACATAGAGAATTATATTGATATAA
Found at i:1232537 original size:156 final size:152
Alignment explanation
Indices: 1232227--1232709 Score: 438
Period size: 156 Copynumber: 3.1 Consensus size: 152
1232217 TAAGCTCAAG
* * *
1232227 AAAAATTACGAAAATGCTCC-TAG-GAGATA-CTTTCATCGTAGAAGTACCTGATACCCCTAAAG
1 AAAAATTACAAAAATGC-CCTTAGAG-GATACCTTT-AACGTAGAAGTACC-GATAACCCTAAAG
* * * * * * * *
1232289 GACTTTAAAAGGATTATAGATGGGACGAACCTGTCCTAAATACCCACATTTAGCATAAAAGTAGA
62 GAC-TTAAAAGGATTAAAAATAGGATGAACCTATCCTAAATACCCACCTTCAACATAAAAG-AGA
* * * *
1232354 CCCCGTGACAATTTGGGACTCAGTTCTA
125 CCCGGTGACAACTTAGGACTCGGTTCTA
* * * * *
1232382 AAAATTTATC-AAAATGCCCTTAGAGGATATCTTTAACGTAGAAGTGGCCGATATCCCTAAAAGA
1 AAAAATTA-CAAAAATGCCCTTAGAGGATACCTTTAACGTAGAAGT-ACCGATAACCCTAAAGGA
* *
1232446 CTTAAAAAGGATTACAAAATAGGATGAACCTATCCTAAATACCCACCTTCGACATTAAAGAGGAC
64 CTT-AAAAGGATTA-AAAATAGGATGAACCTATCCTAAATACCCACCTTCAACATAAAAGA-GAC
** *
1232511 ATGGTGACAACTTAGGACTTGGTTCTA
126 CCGGTGACAACTTAGGACTCGGTTCTA
* * * ** * ** *
1232538 AAAAATTACAAAAATACCTTTAGAGGATACCTTTGATATAAAAGTACTCGGCAAACCTAAAGGAC
1 AAAAATTACAAAAATGCCCTTAGAGGATACCTTTAACGTAGAAGTAC-CGATAACCCTAAAGGAC
* * * * *
1232603 ATAAAATGATCATAGAA-AGGATTAACCTATCCTAAATACCCACCTTCAACATAAAAGACGACCC
65 TTAAAAGGATTA-AAAATAGGATGAACCTATCCTAAATACCCACCTTCAACATAAAAGA-GACCC
*
1232667 GGTGACAACTTAGGACTCGATT-TA
128 GGTGACAACTTAGGACTCGGTTCTA
1232691 AAAAATTACAAAAATGCCC
1 AAAAATTACAAAAATGCCC
1232710 CTATGAGTAT
Statistics
Matches: 267, Mismatches: 51, Indels: 22
0.79 0.15 0.06
Matches are distributed among these distances:
153 19 0.07
154 65 0.24
155 69 0.26
156 114 0.43
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (152 bp):
AAAAATTACAAAAATGCCCTTAGAGGATACCTTTAACGTAGAAGTACCGATAACCCTAAAGGACT
TAAAAGGATTAAAAATAGGATGAACCTATCCTAAATACCCACCTTCAACATAAAAGAGACCCGGT
GACAACTTAGGACTCGGTTCTA
Found at i:1234350 original size:11 final size:12
Alignment explanation
Indices: 1234314--1234350 Score: 51
Period size: 11 Copynumber: 3.2 Consensus size: 12
1234304 AATTTTTTCA
1234314 TTTTTCTCTTAT
1 TTTTTCTCTTAT
*
1234326 TTTTTCT-TTCT
1 TTTTTCTCTTAT
1234337 TTTTTCTCTT-T
1 TTTTTCTCTTAT
1234348 TTT
1 TTT
1234351 ATCCTCCAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (12 bp):
TTTTTCTCTTAT
Found at i:1235059 original size:166 final size:167
Alignment explanation
Indices: 1234812--1235217 Score: 477
Period size: 166 Copynumber: 2.4 Consensus size: 167
1234802 TGTTATATAT
* * *
1234812 AAAAAATTCAAAAA-AATAAGAAATACATTGAA-TTTTGTAAAACTAATTTAAT-GAGAATTTAA
1 AAAAAATTCAAAAATAATAA-AAATAAATT-AATTTTTG-AAAACTAATTAAATAG-GAATTAAA
* * * *
1234874 TAACAATA-TTAGATGAATTTCAAAAATTTTAAAA-TGAGAAAAATCTCCCT-GAAAATATTAAT
62 TAATAATATTTAGATGAATTTCAAAAA-TTAAAAACTAAGAAAAATC-CCCTCAAAAATATTAA-
* * *
1234936 C-GAATAGAAAACTTAGTTTTTCGAAAATAGGAAAATTTTAAGG
124 CGGAATAAAAAACTTAGTATTTCGAAAATAGGAAAATTTAAAGG
* *
1234979 AAAAAATTCAAAAATCATGAAAATAAATTAATTTTTGAAAACTAATTAAATAGGAATTAAATAAT
1 AAAAAATTCAAAAATAATAAAAATAAATTAATTTTTGAAAACTAATTAAATAGGAATTAAATAAT
* *
1235044 AATATTTAG-TGAATTTCAAAAATTAAAAACTAAGAAAAATCCCCTCAAAAATATTTACGGAGTA
66 AATATTTAGATGAATTTCAAAAATTAAAAACTAAGAAAAATCCCCTCAAAAATATTAACGGAATA
* *
1235108 AAAAACTTCGTATTTCGAAAATAGGGAAATTTAAAGG
131 AAAAACTTAGTATTTCGAAAATAGGAAAATTTAAAGG
* * * * * * *
1235145 AAAAAATTAAAAAATGAATAAAAATGAATGAATTTTTGAAAAATGATTCAATATGAATTAAATAA
1 AAAAAATTCAAAAAT-AATAAAAATAAATTAATTTTTGAAAACTAATTAAATAGGAATTAAATAA
1235210 TAATATTT
65 TAATATTT
1235218 TACGAATTTT
Statistics
Matches: 206, Mismatches: 25, Indels: 16
0.83 0.10 0.06
Matches are distributed among these distances:
165 11 0.05
166 111 0.54
167 81 0.39
168 3 0.01
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.31
Consensus pattern (167 bp):
AAAAAATTCAAAAATAATAAAAATAAATTAATTTTTGAAAACTAATTAAATAGGAATTAAATAAT
AATATTTAGATGAATTTCAAAAATTAAAAACTAAGAAAAATCCCCTCAAAAATATTAACGGAATA
AAAAACTTAGTATTTCGAAAATAGGAAAATTTAAAGG
Found at i:1236552 original size:84 final size:85
Alignment explanation
Indices: 1236340--1236727 Score: 251
Period size: 84 Copynumber: 4.5 Consensus size: 85
1236330 ATTGACATGC
* * * * *
1236340 CAACATAGGATAAAGGAGTTTAC-CGAGCACTAAACCGATAGGTAAA-CAAGGGATG-AAAGGTT
1 CAACAAAGGATAAAAGA-TTTACTCGAG-ACTAAATCGATAGGTAAATAAAGGGATGAAAAAGTT
* ** * *
1236402 -AAGCAGGGCTAAACCAATAAGT
64 GACG-AGGATTAAACCGACAAGT
*
1236424 CAACAAATGG-TAAAAGATTTACTCGAGACTAAATCGATAGGTAAAT-AAGGGATGAAATAGTTG
1 CAACAAA-GGATAAAAGATTTACTCGAGACTAAATCGATAGGTAAATAAAGGGATGAAAAAGTTG
*
1236487 ACCGA-GATTGAACCGACAAGT
65 A-CGAGGATTAAACCGACAAGT
* * * *
1236508 CAACAAAGGATAAAAGATTTATTCGGGAGTAAAAT-GATATGTAAATAAAGGGATGAAAAAGTTG
1 CAACAAAGGATAAAAGATTTACTCGAGACT-AAATCGATAGGTAAATAAAGGGATGAAAAAGTTG
* **
1236572 ACTAGGATTAAACTTACAAGT
65 ACGAGGATTAAACCGACAAGT
* * * ** * * * *
1236593 CAACAAAAGATGAAAAAGGGTTTACAT-GGGACTAAGCCAATAGGTAAACAACA-TGATGAAAAT
1 CAACAAAGGAT--AAAA-GATTTAC-TCGAGACTAAATCGATAGGTAAATAA-AGGGATGAAAAA
* *
1236656 GTTGATCG-GGATTGAACTGACAAGT
61 GTTGA-CGAGGATTAAACCGACAAGT
* * * *
1236681 CAATAAAAGATGAAAAAGGTTTACCTCG-GACTAAGTCGATAGGTAAA
1 CAACAAAGGAT--AAAAGATTTA-CTCGAGACTAAATCGATAGGTAAA
1236728 CAAAAGATAA
Statistics
Matches: 248, Mismatches: 37, Indels: 35
0.77 0.12 0.11
Matches are distributed among these distances:
83 32 0.13
84 68 0.27
85 48 0.19
86 1 0.00
87 30 0.12
88 66 0.27
89 3 0.01
ACGTcount: A:0.44, C:0.12, G:0.23, T:0.21
Consensus pattern (85 bp):
CAACAAAGGATAAAAGATTTACTCGAGACTAAATCGATAGGTAAATAAAGGGATGAAAAAGTTGA
CGAGGATTAAACCGACAAGT
Found at i:1236660 original size:88 final size:87
Alignment explanation
Indices: 1236559--1236730 Score: 238
Period size: 88 Copynumber: 2.0 Consensus size: 87
1236549 TAAATAAAGG
* *
1236559 GATGAAAAAGTTGA-CTAGGATTAAACTTACAAGTCAACAAAAGATGAAAAAGGGTTTACATGGG
1 GATGAAAAAGTTGATC-AGGATTAAACTGACAAGTCAACAAAAGATGAAAAA-GGTTTACATCGG
1236623 ACTAAGCCAATAGGTAAACAACAT
64 ACTAAGCCAATAGGTAAACAACAT
* * * * *
1236647 GATGAAAATGTTGATCGGGATTGAACTGACAAGTCAATAAAAGATGAAAAAGGTTTACCTCGGAC
1 GATGAAAAAGTTGATCAGGATTAAACTGACAAGTCAACAAAAGATGAAAAAGGTTTACATCGGAC
* *
1236712 TAAGTCGATAGGTAAACAA
66 TAAGCCAATAGGTAAACAA
1236731 AAGATAAAAA
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
87 29 0.39
88 44 0.59
89 1 0.01
ACGTcount: A:0.44, C:0.12, G:0.22, T:0.22
Consensus pattern (87 bp):
GATGAAAAAGTTGATCAGGATTAAACTGACAAGTCAACAAAAGATGAAAAAGGTTTACATCGGAC
TAAGCCAATAGGTAAACAACAT
Found at i:1236869 original size:43 final size:43
Alignment explanation
Indices: 1236778--1236965 Score: 171
Period size: 43 Copynumber: 4.3 Consensus size: 43
1236768 AAGTTCGATT
* * * * **
1236778 AGGGCTAAACCATCATGTCAAATAAGGATGAAAGAAGTTTGAAG
1 AGGGCAAAACCATCACGTCAAAT-AGGGTGAAAAAAGTTTGACC
* * ** *
1236822 AGGGCAAAACCATCGCGTCAAATGGGGTGAAAGGAGTTTGACT
1 AGGGCAAAACCATCACGTCAAATAGGGTGAAAAAAGTTTGACC
*
1236865 AGGGCAAAACCATCACGTCCAAT-GGAGTGAAAAAAGTTTGACC
1 AGGGCAAAACCATCACGTCAAATAGG-GTGAAAAAAGTTTGACC
* * * * * * *
1236908 AGGGTAGAGCCATCGCATCAAACATGGTGAAAAAAGTTTGACC
1 AGGGCAAAACCATCACGTCAAATAGGGTGAAAAAAGTTTGACC
*
1236951 AAGGCAAAACCATCA
1 AGGGCAAAACCATCA
1236966 TGTCCAACAA
Statistics
Matches: 116, Mismatches: 26, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
42 2 0.02
43 93 0.80
44 21 0.18
ACGTcount: A:0.39, C:0.18, G:0.26, T:0.18
Consensus pattern (43 bp):
AGGGCAAAACCATCACGTCAAATAGGGTGAAAAAAGTTTGACC
Found at i:1236923 original size:86 final size:86
Alignment explanation
Indices: 1236768--1236972 Score: 214
Period size: 86 Copynumber: 2.4 Consensus size: 86
1236758 TAAACGTAAC
* * * * * *
1236768 AAGTTCGATTAGGGCTAAACCATCATGTCAAATAAGGATGAAAGAAGTTTGAAGAGGGCAAAACC
1 AAGTTTGACTAGGGCAAAACCATCATGTCCAAT-AGGATGAAAAAAGTTTGAACAGGGCAAAACC
* ** *
1236833 ATCGCGTCAAATGGGGTGAAAG
65 ATCGCATCAAACAGGGTGAAAA
* * * * * *
1236855 GAGTTTGACTAGGGCAAAACCATCACGTCCAAT-GGAGTGAAAAAAGTTTGACCAGGGTAGAGCC
1 AAGTTTGACTAGGGCAAAACCATCATGTCCAATAGGA-TGAAAAAAGTTTGAACAGGGCAAAACC
*
1236919 ATCGCATCAAACATGGTGAAAA
65 ATCGCATCAAACAGGGTGAAAA
* *
1236941 AAGTTTGACCAAGGCAAAACCATCATGTCCAA
1 AAGTTTGACTAGGGCAAAACCATCATGTCCAA
1236973 CAAATAGATG
Statistics
Matches: 96, Mismatches: 21, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
85 3 0.03
86 66 0.69
87 27 0.28
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.19
Consensus pattern (86 bp):
AAGTTTGACTAGGGCAAAACCATCATGTCCAATAGGATGAAAAAAGTTTGAACAGGGCAAAACCA
TCGCATCAAACAGGGTGAAAA
Found at i:1237239 original size:41 final size:41
Alignment explanation
Indices: 1237039--1237231 Score: 208
Period size: 41 Copynumber: 4.7 Consensus size: 41
1237029 CCAGTGTGAT
*
1237039 ATCGATAAAGCCAATGGGTTAGAAGGGTTGGCTA-GGATGAA
1 ATCGATAAAGCCAATGGGTTAGAAGGGTTGACTAGGGA-GAA
** * * *
1237080 ATTAATAAAGCCAACGGGTTAGAAGGGTTGGCTAGGGCGAA
1 ATCGATAAAGCCAATGGGTTAGAAGGGTTGACTAGGGAGAA
* * * *
1237121 ACCAATAAAGCCAATGGGTTAGAAAGGTTGACTAGGGTGAA
1 ATCGATAAAGCCAATGGGTTAGAAGGGTTGACTAGGGAGAA
* * * ** * *
1237162 ACCGATAAAGCTAATAGGTTAGAAAAGTTGACCAGGGAAAA
1 ATCGATAAAGCCAATGGGTTAGAAGGGTTGACTAGGGAGAA
*
1237203 ATCGATAAAGCTAATGGGTTAGAAGGGTT
1 ATCGATAAAGCCAATGGGTTAGAAGGGTT
1237232 AACCAGGGCA
Statistics
Matches: 130, Mismatches: 21, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
41 128 0.98
42 2 0.02
ACGTcount: A:0.38, C:0.11, G:0.31, T:0.21
Consensus pattern (41 bp):
ATCGATAAAGCCAATGGGTTAGAAGGGTTGACTAGGGAGAA
Found at i:1237251 original size:41 final size:40
Alignment explanation
Indices: 1237041--1237253 Score: 167
Period size: 41 Copynumber: 5.2 Consensus size: 40
1237031 AGTGTGATAT
* * * *
1237041 CGATAAAGCCAATGGGTTAGAAGGGTTGGCTAGGATG-AAAT
1 CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGG--GCAAAC
** * * * *
1237082 TAATAAAGCCAACGGGTTAGAAGGGTTGGCTAGGGCGAAAC
1 CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGGGC-AAAC
* * *
1237123 CAATAAAGCCAATGGGTTAGAAAGGTTGACTAGGGTGAAAC
1 CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGGG-CAAAC
* * * * *
1237164 CGATAAAGCTAATAGGTTAGAAAAGTTGACCAGGGAAAAAT
1 CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGGG-CAAAC
* * *
1237205 CGATAAAGCTAATGGGTTAGAAGGGTTAACCAGGGCAAAGC
1 CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGGGCAAA-C
*
1237246 TGATAAAG
1 CGATAAAG
1237254 TCAACCAATT
Statistics
Matches: 144, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
39 1 0.01
40 3 0.02
41 140 0.97
ACGTcount: A:0.38, C:0.12, G:0.31, T:0.19
Consensus pattern (40 bp):
CGATAAAGCCAATGGGTTAGAAAGGTTGACCAGGGCAAAC
Found at i:1237294 original size:163 final size:164
Alignment explanation
Indices: 1237106--1237677 Score: 477
Period size: 164 Copynumber: 3.5 Consensus size: 164
1237096 GGTTAGAAGG
* ** *
1237106 GTTGGCTAGGGCGAAACCAATAAAGCCAATGGGTTAGAAAGGTTGACTAGGGTGAAACCGATAAA
1 GTTGGCTAGGGCGAAACCGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGTGAAACCGATAAA
* * *
1237171 G-CTAA-TAGGTTAGAAA-AGTTGACC-AGG-GAAAAATCGATAAAGCTAATGGGTTAGAAGGGT
66 GTC-AACCA-ATTA-AAAGAGTTGACCTAGGCG-AAAAT-GATAAAGCAAATGGGTTAGAAGGGT
* *
1237231 TAACCAGGGCAA-AGCTGATAAAGTCAACCAATTAAAAA-
126 TAACCAGGGCAAGATC-GATAAAGTAAACCAATTAAAAAT
** * ** ** * * *
1237269 GTTGGCTAGGGCGAAATTGATAAAGCTAACAAATTAGAAGGGTCAACCA-TGTCGAAACTGATAA
1 GTTGGCTAGGGCGAAACCGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGT-GAAACCGATAA
* * * *
1237333 AGTCAACCAATTAAAAGAGTTGGCCTAGGCGAAACTGATAAAGCAAATGGGTTAGAAGGGTTGAT
65 AGTCAACCAATTAAAAGAGTTGACCTAGGCGAAAATGATAAAGCAAATGGGTTAGAAGGGTTAAC
1237398 CAGGGCAAGATCGATAAAGTAAACCAATTAAAAAT
130 CAGGGCAAGATCGATAAAGTAAACCAATTAAAAAT
* * *
1237433 GTTGGCTAGGGTGAAACCGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGAGAAACCGATCAA
1 GTTGGCTAGGGCGAAACCGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGTGAAACCGATAAA
* * ** * ** * ** * *
1237498 GTCAACCAGTTAAAAGGGTTGGTC-AGGGTGAAAACAATAAAGTCAAA-AGAATAGAATGGTCAA
66 GTCAACCAATTAAAAGAGTTGACCTA-GGCGAAAATGATAAAG-CAAATGGGTTAGAAGGGTTAA
* * * * *
1237561 CCAAGGCAA-AACTGAAAAAGTCAACTAATTAAAAGA-
129 CCAGGGCAAGATC-GATAAAGTAAACCAATTAAAA-AT
* * * * * ** **
1237597 GATGGCTAGGGCGAAACCAATAAAGCTAACCA-GTTAGAAGTGTTGACCAGGGCAAAATTGATAA
1 GTTGGCTAGGGCGAAACCGATAAAGCCAA-CAGGTTAGAAGGGTTGACTAGGGTGAAACCGATAA
1237661 AGTCAACCAATTAAAAG
65 AGTCAACCAATTAAAAG
1237678 GGTTTGACTA
Statistics
Matches: 328, Mismatches: 67, Indels: 27
0.78 0.16 0.06
Matches are distributed among these distances:
162 5 0.02
163 119 0.36
164 195 0.59
165 9 0.03
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (164 bp):
GTTGGCTAGGGCGAAACCGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGTGAAACCGATAAA
GTCAACCAATTAAAAGAGTTGACCTAGGCGAAAATGATAAAGCAAATGGGTTAGAAGGGTTAACC
AGGGCAAGATCGATAAAGTAAACCAATTAAAAAT
Found at i:1237366 original size:41 final size:42
Alignment explanation
Indices: 1237236--1237677 Score: 165
Period size: 41 Copynumber: 10.8 Consensus size: 42
1237226 AGGGTTAACC
1237236 AGGGC-AAAGCTGATAAAGTCAACCAATTAAAA-AGTTGG-CT
1 AGGGCGAAA-CTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
* * * * ***
1237276 AGGGCGAAATTGATAAAG-CTAACAAATTAGAAGGGTCAACC-
1 AGGGCGAAACTGATAAAGTC-AACCAATTAAAAGAGTTGGCCT
* *
1237317 ATGTCGAAACTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
1 AGGGCGAAACTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
**** * * **
1237359 A-GGCGAAACTGATAAAG-CAAATGGGTTAGAAGGGTTGATC-
1 AGGGCGAAACTGATAAAGTC-AACCAATTAAAAGAGTTGGCCT
*
1237399 AGGGC-AAGA-TCGATAAAGTAAACCAATTAAAA-ATGTTGG-CT
1 AGGGCGAA-ACT-GATAAAGTCAACCAATTAAAAGA-GTTGGCCT
* * * * * * *
1237440 AGGGTGAAACCGATAAAGCCAA-CAGGTTAGAAGGGTT-GACT
1 AGGGCGAAACTGATAAAGTCAACCA-ATTAAAAGAGTTGGCCT
* * * * * *
1237481 AGGGAGAAACCGATCAAGTCAACCAGTTAAAAGGGTTGGTC-
1 AGGGCGAAACTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
* * * * * *
1237522 AGGGTGAAAAC-AATAAAGTCAA--AA-GAATAGA-ATGGTCAACC
1 AGGGCG-AAACTGATAAAGTCAACCAATTAAAAGAGTTGG-C--CT
* * * * *
1237563 AAGGCAAAACTGAAAAAGTCAACTAATTAAAAGAGATGG-CT
1 AGGGCGAAACTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
** * * * *
1237604 AGGGCGAAACCAATAAAG-CTAACCAGTTAGAAGTGTTGACC-
1 AGGGCGAAACTGATAAAGTC-AACCAATTAAAAGAGTTGGCCT
* *
1237645 AGGGCAAAATTGATAAAGTCAACCAATTAAAAG
1 AGGGCGAAACTGATAAAGTCAACCAATTAAAAG
1237678 GGTTTGACTA
Statistics
Matches: 290, Mismatches: 79, Indels: 65
0.67 0.18 0.15
Matches are distributed among these distances:
37 3 0.01
38 4 0.01
39 2 0.01
40 38 0.13
41 217 0.75
42 15 0.05
43 2 0.01
44 5 0.02
45 4 0.01
ACGTcount: A:0.43, C:0.14, G:0.24, T:0.19
Consensus pattern (42 bp):
AGGGCGAAACTGATAAAGTCAACCAATTAAAAGAGTTGGCCT
Found at i:1237392 original size:82 final size:81
Alignment explanation
Indices: 1237205--1237677 Score: 420
Period size: 82 Copynumber: 5.8 Consensus size: 81
1237195 AGGGAAAAAT
**
1237205 CGATAAAGCTAATGGGTTAGAAGGGTTAACCAGGGCAAAGCTGATAAAGTCAACCAATTAAAA-A
1 CGATAAAGCTAACAGGTTAGAAGGGTTAACCAGGGCAAA-CTGATAAAGTCAACCAATTAAAAGA
*
1237269 GTTGGCTAGGGCGAAAT
65 GTTGGCTAGGGCGAAAC
* ** * * *
1237286 TGATAAAGCTAACAAATTAGAAGGGTCAACCATGTCGAAACTGATAAAGTCAACCAATTAAAAGA
1 CGATAAAGCTAACAGGTTAGAAGGGTTAACCAGGGC-AAACTGATAAAGTCAACCAATTAAAAGA
1237351 GTTGGCCTA-GGCGAAAC
65 GTTGG-CTAGGGCGAAAC
* * ** * * *
1237368 TGATAAAGCAAATGGGTTAGAAGGGTTGATCAGGGCAAGA-TCGATAAAGTAAACCAATTAAAA-
1 CGATAAAGCTAACAGGTTAGAAGGGTTAACCAGGGCAA-ACT-GATAAAGTCAACCAATTAAAAG
*
1237431 ATGTTGGCTAGGGTGAAAC
64 A-GTTGGCTAGGGCGAAAC
* * * * * * * *
1237450 CGATAAAGCCAACAGGTTAGAAGGGTTGACTAGGGAGAAACCGATCAAGTCAACCAGTTAAAAGG
1 CGATAAAGCTAACAGGTTAGAAGGGTTAACCAGGG-CAAACTGATAAAGTCAACCAATTAAAAGA
* *
1237515 GTTGG-TCAGGGTGAAAA
65 GTTGGCT-AGGGCGAAAC
* * ** * * * * *
1237532 CAATAAAG-TCAAAAGAATAGAATGGTCAACCAAGGCAAAACTGAAAAAGTCAACTAATTAAAAG
1 CGATAAAGCT-AACAGGTTAGAAGGGTTAACCAGGGC-AAACTGATAAAGTCAACCAATTAAAAG
*
1237596 AGATGGCTAGGGCGAAAC
64 AGTTGGCTAGGGCGAAAC
* * * *
1237614 CAATAAAGCTAACCA-GTTAGAAGTGTTGACCAGGGCAAAATTGATAAAGTCAACCAATTAAAAG
1 CGATAAAGCTAA-CAGGTTAGAAGGGTTAACCAGGGC-AAACTGATAAAGTCAACCAATTAAAAG
1237678 GGTTTGACTA
Statistics
Matches: 311, Mismatches: 65, Indels: 31
0.76 0.16 0.08
Matches are distributed among these distances:
81 59 0.19
82 244 0.78
83 8 0.03
ACGTcount: A:0.42, C:0.14, G:0.25, T:0.19
Consensus pattern (81 bp):
CGATAAAGCTAACAGGTTAGAAGGGTTAACCAGGGCAAACTGATAAAGTCAACCAATTAAAAGAG
TTGGCTAGGGCGAAAC
Found at i:1237904 original size:88 final size:87
Alignment explanation
Indices: 1237724--1238690 Score: 515
Period size: 88 Copynumber: 11.1 Consensus size: 87
1237714 AGAAGGGAGA
* * * * *
1237724 TTTGACTAGGGTGGTAACCATACATCAAATCA-AAATAAAAAGAATCTAACTAGGGTGGTAACTA
1 TTTGACTAGGGTGGTAACCATACATCAAAT-AGAAATGAAAAGAATTTGACCAGGGTGGTAACCA
** * * **
1237788 TATGTCAGATAGAAAGGAG-GCAG
65 TACATCAAAT-GAAATGAGAAAAG
* * * * *
1237811 ATTTGACCAGAGTGGTAACCATACATCAAAT-GAGAATGAAAAGAATCTGACCAGGGTAGTAACT
1 -TTTGACTAGGGTGGTAACCATACATCAAATAGA-AATGAAAAGAATTTGACCAGGGTGGTAACC
*
1237875 ATACATTAAATTGAAATGAGAAAAG
64 ATACATCAAA-TGAAATGAGAAAAG
* * ** * * *
1237900 TTTGACTAGGGTGGTAACCATACGTTAAATAGAAAT-AAGGCGAATTTGATCACGATGGTAACCA
1 TTTGACTAGGGTGGTAACCATACATCAAATAGAAATGAA-AAGAATTTGACCAGGGTGGTAACCA
* *
1237964 TACATCAAATCAACATGA-AAAGAA
65 TACATCAAATGAA-ATGAGAAA-AG
* * * ** * *
1237988 TCTGACTAGAGTGGTAACCATACGT-AAGACCGCAATGAGAAA-AGTTTGACCAGGGTGGTAACC
1 TTTGACTAGGGTGGTAACCATACATCAA-ATAGAAATGA-AAAGAATTTGACCAGGGTGGTAACC
* ** * *
1238051 ATACGTCAAACAAAAAAGAGGCAAA-
64 ATACATCAAA-TGAAATGA-GAAAAG
* * *
1238076 TTTGACTAGGGTGGTAGCCATACATCAAATTAG-AATGAAAAGAATTTGACTAGGGTGGCAACCA
1 TTTGACTAGGGTGGTAACCATACATCAAA-TAGAAATGAAAAGAATTTGACCAGGGTGGTAACCA
*
1238140 TA-ATCAGACTGAAATGAGAAAAG
65 TACATCA-AATGAAATGAGAAAAG
* * * ** *
1238163 TTTGACCAAGGTGGTAACCATACA-CAAATAGAAAGGAAGCGGATTTGACCAGGGTGGTAACCAT
1 TTTGACTAGGGTGGTAACCATACATCAAATAGAAATGAAAAGAATTTGACCAGGGTGGTAACCAT
** * * *
1238227 ATGTCAAATCAACATGAAAAAAA
66 ACATCAAATGAA-ATGAGAAAAG
* * * * * *
1238250 TTTGACCAGGGTGGTAACCATACGTCAGACT-GAAACGAGAAA-AGTTTGGCCAGGGTGGTAACC
1 TTTGACTAGGGTGGTAACCATACATCA-AATAGAAATGA-AAAGAATTTGACCAGGGTGGTAACC
** ** **
1238313 ATATGTCAAAT-AAAAAAGAGGCAG
64 ATACATCAAATGAAATGAGA-AAAG
* * ** * * * *
1238337 ATTTGACCAGGGTGGTAACTATATGTC--ATCAG-AATTAAAAGAATCTGACCAAGGTAGTAACC
1 -TTTGACTAGGGTGGTAACCATACATCAAAT-AGAAATGAAAAGAATTTGACCAGGGTGGTAACC
* *** *
1238399 ATACATTAGACCAAAATAAGAAAAG
64 ATACATCA-AATGAAATGAGAAAAG
* ** * *** *
1238424 TTTGACTAGGGTGGTAACTATATGTCAAACAGAAATGTGGCAG-ATTTGACTAGGGTGGTAACCA
1 TTTGACTAGGGTGGTAACCATACATCAAATAGAAATG-AAAAGAATTTGACCAGGGTGGTAACCA
* * * *
1238488 TACGTCAAATTAGAATGAAAAAAAA
65 TACATCAAATGA-AATG-AGAAAAG
* * * ** * * * * * *
1238513 TCTAACTTGGGTGGTAACCATATGTCAGATAGAAAGGAAACGGATTTGACTAGGGTGGTAATCAT
1 TTTGACTAGGGTGGTAACCATACATCAAATAGAAATGAAAAGAATTTGACCAGGGTGGTAACCAT
* * *
1238578 ACATCAGACA-AAAAGGATACAAA-
66 ACATCA-A-ATGAAATGAGA-AAAG
* * * *
1238601 TTTGACTAAGGTGGTAACCATACATCAAAT---CA-GAAAAGAATATGACTAGGGTGGTAACCAT
1 TTTGACTAGGGTGGTAACCATACATCAAATAGAAATGAAAAGAATTTGACCAGGGTGGTAACCAT
* * *
1238662 ACATTAAACTAAAACGAGAAAAG
66 ACATCAAA-TGAAATGAGAAAAG
1238685 TTTGAC
1 TTTGAC
1238691 CAGGTCCTAT
Statistics
Matches: 679, Mismatches: 155, Indels: 94
0.73 0.17 0.10
Matches are distributed among these distances:
82 1 0.00
83 4 0.01
84 43 0.06
85 8 0.01
86 91 0.13
87 87 0.13
88 355 0.52
89 84 0.12
90 5 0.01
91 1 0.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (87 bp):
TTTGACTAGGGTGGTAACCATACATCAAATAGAAATGAAAAGAATTTGACCAGGGTGGTAACCAT
ACATCAAATGAAATGAGAAAAG
Found at i:1237917 original size:132 final size:132
Alignment explanation
Indices: 1237680--1238690 Score: 881
Period size: 132 Copynumber: 7.7 Consensus size: 132
1237670 ATTAAAAGGG
* * * ** *
1237680 TTTGACTAAGGTGGTAACCATACGTCAAA-CAAGAA-GAAGGGAGATTTGACTAGGGTGGTAACC
1 TTTGACCAGGGTGGTAACCATACATCAAATC-AGAATGAAAAGA-ATCTGACTAGGGTGGTAACC
* * * * * * * *
1237743 ATACATCA-AATCAAAAT-A-AAAAGAATCTAACTAGGGTGGTAACTATATGTCAGATAGAAAGG
64 ATACATTAGACT-GAAATGAGAAAAG--TTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGG
1237805 AGGCAGA
126 AGGCAGA
* * * * *
1237812 TTTGACCAGAGTGGTAACCATACATCAAATGAGAATGAAAAGAATCTGACCAGGGTAGTAACTAT
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGACTAGGGTGGTAACCAT
* * * **
1237877 ACATTAAATTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTTAAATAGAAATAAGGC-
66 ACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCA
1237941 GAA
131 G-A
* * * *
1237944 TTTGATCACGATGGTAACCATACATCAAATCA-ACATGAAAAGAATCTGACTAGAGTGGTAACCA
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGA-ATGAAAAGAATCTGACTAGGGTGGTAACCA
* * * * * * * *
1238008 TACGTAAGACCGCAATGAGAAAAGTTTGACCAGGGTGGTAACCATACGTCAAACAAAAAAGAGGC
65 TACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGC
*
1238073 AAA
130 AGA
* * * * *
1238076 TTTGACTAGGGTGGTAGCCATACATCAAATTAGAATGAAAAGAATTTGACTAGGGTGGCAACCAT
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGACTAGGGTGGTAACCAT
* * * * * *
1238141 A-ATCAGACTGAAATGAGAAAAGTTTGACCAAGGTGGTAACCATAC-ACAAATAGAAAGGAAGCG
66 ACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCA
1238204 GA
131 GA
** * * *
1238206 TTTGACCAGGGTGGTAACCATATGTCAAATCA-ACATGAAAAAAATTTGACCAGGGTGGTAACCA
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGA-ATGAAAAGAATCTGACTAGGGTGGTAACCA
* * * * * * * *
1238270 TACGTCAGACTGAAACGAGAAAAGTTTGGCCAGGGTGGTAACCATATGTCAAATAAAAAAGAGGC
65 TACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGC
1238335 AGA
130 AGA
* ** * * * *
1238338 TTTGACCAGGGTGGTAACTATATGTC--ATCAGAATTAAAAGAATCTGACCAAGGTAGTAACCAT
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGACTAGGGTGGTAACCAT
** * * * * * *
1238401 ACATTAGACCAAAATAAGAAAAGTTTGACTAGGGTGGTAACTATATGTCAAACAGAAATGTGGCA
66 ACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCA
1238466 GA
131 GA
* * * * * *
1238468 TTTGACTAGGGTGGTAACCATACGTCAAATTAGAATGAAAAAAAATCTAACTTGGGTGGTAACCA
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGAATG-AAAAGAATCTGACTAGGGTGGTAACCA
** * * * * * * *
1238533 TATGTCAGA-TAGAAA-G-GAAACGGATTTGACTAGGGTGGTAATCATACATCAGACAAAAAGGA
65 TACATTAGACT-GAAATGAGAAA-AG-TTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGA
** *
1238595 TACAAA
127 GGCAGA
* * *
1238601 TTTGACTAAGGTGGTAACCATACATCAAATC---A-GAAAAGAATATGACTAGGGTGGTAACCAT
1 TTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGACTAGGGTGGTAACCAT
* * *
1238662 ACATTAAACTAAAACGAGAAAAGTTTGAC
66 ACATTAGACTGAAATGAGAAAAGTTTGAC
1238691 CAGGTCCTAT
Statistics
Matches: 713, Mismatches: 144, Indels: 48
0.79 0.16 0.05
Matches are distributed among these distances:
128 37 0.05
129 5 0.01
130 181 0.25
131 85 0.12
132 300 0.42
133 100 0.14
134 5 0.01
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (132 bp):
TTTGACCAGGGTGGTAACCATACATCAAATCAGAATGAAAAGAATCTGACTAGGGTGGTAACCAT
ACATTAGACTGAAATGAGAAAAGTTTGACTAGGGTGGTAACCATACGTCAAATAGAAAGGAGGCA
GA
Found at i:1238176 original size:43 final size:43
Alignment explanation
Indices: 1237724--1238694 Score: 371
Period size: 44 Copynumber: 22.2 Consensus size: 43
1237714 AGAAGGGAGA
* *
1237724 TTTGACTAGGGTGGTAACCATACATCAAATCAAAAT-A-AAAAG
1 TTTGACCAGGGTGGTAACCATACATCAAAT-GAAATGAGAAAAG
* * * * ** * * **
1237766 AATCTAACTAGGGTGGTAACTATATGTCAGATAGAAAGGAG-GCAG
1 --TTTGACCAGGGTGGTAACCATACATCAAAT-GAAATGAGAAAAG
* *
1237811 ATTTGACCAGAGTGGTAACCATACATCAAATGAGAATGA-AAAGAA
1 -TTTGACCAGGGTGGTAACCATACATCAAATGA-AATGAGAAA-AG
* * * *
1237856 TCTGACCAGGGTAGTAACTATACATTAAATTGAAATGAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCAAA-TGAAATGAGAAAAG
* * * * **
1237900 TTTGACTAGGGTGGTAACCATACGTTAAATAGAAATAAGGCGAA-
1 TTTGACCAGGGTGGTAACCATACATCAAAT-GAAATGA-GAAAAG
* * * * *
1237944 TTTGATCACGATGGTAACCATACATCAAATCAACATGA-AAAGAA
1 TTTGACCAGGGTGGTAACCATACATCAAATGAA-ATGAGAAA-AG
* * * * * *
1237988 TCTGACTAGAGTGGTAACCATACGT-AAGACCGCAATGAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCAA-A-TGAAATGAGAAAAG
* ** * *
1238032 TTTGACCAGGGTGGTAACCATACGTCAAACAAAAAAGAGGCAAA-
1 TTTGACCAGGGTGGTAACCATACATCAAA-TGAAATGA-GAAAAG
* * * *
1238076 TTTGACTAGGGTGGTAGCCATACATCAAATTAGAATGA-AAAGAA
1 TTTGACCAGGGTGGTAACCATACATCAAATGA-AATGAGAAA-AG
* * *
1238120 TTTGACTAGGGTGGCAACCATA-ATCAGACTGAAATGAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCA-AATGAAATGAGAAAAG
* **
1238163 TTTGACCAAGGTGGTAACCATACA-CAAATAGAAA-G-GAAGCGG
1 TTTGACCAGGGTGGTAACCATACATCAAAT-GAAATGAGAA-AAG
** * * *
1238205 ATTTGACCAGGGTGGTAACCATATGTCAAATCAACATGAAAAAAA
1 -TTTGACCAGGGTGGTAACCATACATCAAATGAA-ATGAGAAAAG
* * *
1238250 TTTGACCAGGGTGGTAACCATACGTCAGACTGAAACGAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCA-AATGAAATGAGAAAAG
* ** ** **
1238294 TTTGGCCAGGGTGGTAACCATATGTCAAAT-AAAAAAGAGGCAG
1 TTTGACCAGGGTGGTAACCATACATCAAATGAAATGAGA-AAAG
* *
1238337 ATTTGACCAGGGTGGTAACTATATGTCATCAGAATTAAA--AG--AA-
1 -TTTGACCAGGGTGGTAACCATA---CATCA-AATGAAATGAGAAAAG
* * * * *** *
1238380 TCTGACCAAGGTAGTAACCATACATTAGACCAAAATAAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCA-AATGAAATGAGAAAAG
* * ** * * **
1238424 TTTGACTAGGGTGGTAACTATATGTCAAACAGAAATGTG-GCAG
1 TTTGACCAGGGTGGTAACCATACATCAAA-TGAAATGAGAAAAG
* * * * *
1238467 ATTTGACTAGGGTGGTAACCATACGTCAAATTAGAATGAAAAAAAA
1 -TTTGACCAGGGTGGTAACCATACATCAAATGA-AATG-AGAAAAG
* * ** ** * *
1238513 TCTAACTTGGGTGGTAACCATATGTCAGATAGAAA-G-GAAACGG
1 TTTGACCAGGGTGGTAACCATACATCAAAT-GAAATGAGAAA-AG
* * * * *
1238556 ATTTGACTAGGGTGGTAATCATACATCAGACA-AAAAGGATACAAA-
1 -TTTGACCAGGGTGGTAACCATACATCA-A-ATGAAATGAGA-AAAG
* *
1238601 TTTGACTAAGGTGGTAACCATACATCAAATCAGAAA--AG--AA-
1 TTTGACCAGGGTGGTAACCATACATCAAAT--GAAATGAGAAAAG
* * * * *
1238641 TATGACTAGGGTGGTAACCATACATTAAACTAAAACGAGAAAAG
1 TTTGACCAGGGTGGTAACCATACATCAAA-TGAAATGAGAAAAG
1238685 TTTGACCAGG
1 TTTGACCAGG
1238695 TCCTATTGCC
Statistics
Matches: 691, Mismatches: 171, Indels: 130
0.70 0.17 0.13
Matches are distributed among these distances:
39 12 0.02
40 28 0.04
41 8 0.01
42 35 0.05
43 82 0.12
44 448 0.65
45 59 0.09
46 6 0.01
47 7 0.01
48 3 0.00
49 3 0.00
ACGTcount: A:0.41, C:0.14, G:0.22, T:0.22
Consensus pattern (43 bp):
TTTGACCAGGGTGGTAACCATACATCAAATGAAATGAGAAAAG
Found at i:1238765 original size:35 final size:35
Alignment explanation
Indices: 1238706--1238805 Score: 112
Period size: 35 Copynumber: 2.9 Consensus size: 35
1238696 CCTATTGCCA
* * *
1238706 ATACAGTCAAATGAGGGTGAAAAGAGTTTGACCAG
1 ATACAGTCAAACGACGATGAAAAGAGTTTGACCAG
* *
1238741 ATACAGTCAAACGACGATGGAAAGAGTTTGACTAG
1 ATACAGTCAAACGACGATGAAAAGAGTTTGACCAG
* * * *
1238776 ATATAGTCAAACAAAGGTGAAAAGA-TTTGA
1 ATACAGTCAAACGACGATGAAAAGAGTTTGA
1238806 TCGAGTAGTC
Statistics
Matches: 55, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
34 5 0.09
35 50 0.91
ACGTcount: A:0.43, C:0.11, G:0.25, T:0.21
Consensus pattern (35 bp):
ATACAGTCAAACGACGATGAAAAGAGTTTGACCAG
Found at i:1239323 original size:88 final size:88
Alignment explanation
Indices: 1239026--1239392 Score: 411
Period size: 89 Copynumber: 4.1 Consensus size: 88
1239016 GGAATACGAT
* * * * * *
1239026 TAGGAATATG-GGGTCTGCACCTTGCCCTAGGAAAATCAGGTTTTGTGATGCATCATTACCATTT
1 TAGGAATGTGTGGG-CTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCT
* * * *
1239090 AGTAGTT-GAATGAAAGGGATATAAT
65 AGTGGTTGGAA--AGAGGGATATGAC
* * * *
1239115 TGGGAAAGTGTGGGCTGCACCTTGCCCTTA-GAAAATC-AGACTTTGTGATGCATTAGTACCATC
1 TAGGAATGTGTGGGCTACACCTTGCCC-TAGGAAAATCAAG-CTTTGTGATGCATCAGTACCATC
*
1239178 TAGTGGTTAGGAATGAGGGATATGAC
64 TAGTGGTT-GGAAAGAGGGATATGAC
1239204 TAGGAATGTGTGGGCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCTA
1 TAGGAATGTGTGGGCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCTA
*
1239269 GTGGCTGGAAAGAGGGATATGAC
66 GTGGTTGGAAAGAGGGATATGAC
* * * * **
1239292 TAGGAATGTGTGGGCTACACCTTACCTTAGGAAAATTAGGCTTTGTGATGCATCAGTATTATCTA
1 TAGGAATGTGTGGGCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCTA
**
1239357 GTGGTTGGAAAAGAATGATATGA-
66 GTGGTTGG-AAAGAGGGATATGAC
*
1239380 TTGGAATGTGTGG
1 TAGGAATGTGTGG
1239393 ACTCCACAAT
Statistics
Matches: 241, Mismatches: 29, Indels: 17
0.84 0.10 0.06
Matches are distributed among these distances:
88 97 0.40
89 134 0.56
90 7 0.03
91 3 0.01
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (88 bp):
TAGGAATGTGTGGGCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCTA
GTGGTTGGAAAGAGGGATATGAC
Found at i:1239379 original size:177 final size:177
Alignment explanation
Indices: 1239026--1239392 Score: 438
Period size: 177 Copynumber: 2.1 Consensus size: 177
1239016 GGAATACGAT
* * * * * *
1239026 TAGGAATATG-GGGTCTGCACCTTGCCCTAGGAAAATCAGGTTTTGTGATGCATCATTACCATTT
1 TAGGAATGTGTGGGTCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCT
* * * * *
1239090 AGTAGTTGAATGAAAGGGATATAATTGGGAAAGTGTGGGCTGCACCTTGCCCTTAGAAAATCAGA
66 AGTAGTGGAA-GAAAGGGATATAACTAGGAAAGTGTGGGCTACACCTTGACCTTAGAAAATCAGA
* * *
1239155 CTTTGTGATGCATTAGTACCATCTAGTGGTTAGGAATGAGGGATATGA
130 CTTTGTGATGCATCAGTACCATCTAGTGGTTAGGAAAGAAGGATATGA
1239203 CTAGGAATGTGTGGG-CTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATC
1 -TAGGAATGTGTGGGTCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATC
* * * * *
1239267 TAGTGGCTGGAA-AGAGGGATATGACTAGGAATGTGTGGGCTACACCTT-ACCTTAGGAAAATTA
65 TAGTAG-TGGAAGAAAGGGATATAACTAGGAAAGTGTGGGCTACACCTTGACCTTA-GAAAATCA
* ** *
1239330 GGCTTTGTGATGCATCAGTATTATCTAGTGGTT-GGAAAAGAATGATATGA
128 GACTTTGTGATGCATCAGTACCATCTAGTGGTTAGG-AAAGAAGGATATGA
*
1239380 TTGGAATGTGTGG
1 TAGGAATGTGTGG
1239393 ACTCCACAAT
Statistics
Matches: 161, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
176 19 0.12
177 77 0.48
178 58 0.36
179 7 0.04
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (177 bp):
TAGGAATGTGTGGGTCTACACCTTGCCCTAGGAAAATCAAGCTTTGTGATGCATCAGTACCATCT
AGTAGTGGAAGAAAGGGATATAACTAGGAAAGTGTGGGCTACACCTTGACCTTAGAAAATCAGAC
TTTGTGATGCATCAGTACCATCTAGTGGTTAGGAAAGAAGGATATGA
Found at i:1239900 original size:88 final size:87
Alignment explanation
Indices: 1239671--1239901 Score: 248
Period size: 88 Copynumber: 2.6 Consensus size: 87
1239661 ATGTAAATGT
* * * * *
1239671 AGCATCAATAAAGTGGC-AATACATATGAAATGATGCAAATACTAATGTTATCCAAAATGTAGAT
1 AGCATCAATAAAGTGGCAAATGCATATGAAATAATGCAAATA-TAATGTTATCTAAAATGCACAT
* *
1239735 GTGCATGAAACGATGCAAATGCT
65 GTACATGAAACGATGCAAATGCA
** * * ** * *
1239758 AGCATCAATAAAAAGGTAAATGCATATGAAATACTATAAATATCGATGTCATCTAAAATGCACAT
1 AGCATCAATAAAGTGGCAAATGCATATGAAATAATGCAAATAT-AATGTTATCTAAAATGCACAT
* *
1239823 GTACGTGAAATGATGCAAATGCA
65 GTACATGAAACGATGCAAATGCA
* * *
1239846 AGTATCAACAAAGTGGCAAATGCAGATGAAATAATGCAAATATAAATGTTATCTAA
1 AGCATCAATAAAGTGGCAAATGCATATGAAATAATGCAAATAT-AATGTTATCTAA
1239902 TAAAAAAATA
Statistics
Matches: 113, Mismatches: 29, Indels: 3
0.78 0.20 0.02
Matches are distributed among these distances:
87 15 0.13
88 98 0.87
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.25
Consensus pattern (87 bp):
AGCATCAATAAAGTGGCAAATGCATATGAAATAATGCAAATATAATGTTATCTAAAATGCACATG
TACATGAAACGATGCAAATGCA
Found at i:1243682 original size:19 final size:18
Alignment explanation
Indices: 1243657--1243720 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
1243647 ATTTCAACGA
1243657 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1243675 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
1243691 --TGTATCGATACATAAG
1 TTTGTATCGATACATAAG
1243707 TTTTGTATCGATAC
1 -TTTGTATCGATAC
1243721 TATGTACAGT
Statistics
Matches: 39, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 11 0.28
15 2 0.05
17 2 0.05
18 1 0.03
19 23 0.59
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:1243695 original size:32 final size:32
Alignment explanation
Indices: 1243659--1243726 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
1243649 TTCAACGATT
1243659 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
1243691 TGTATCGATACATAAGTTTTGTATCGATACTA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1243723 TGTA
1 TGTA
1243727 CAGTTACGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1243696 original size:13 final size:13
Alignment explanation
Indices: 1243678--1243702 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1243668 ACATAAGTGT
1243678 TGTATCGATACAA
1 TGTATCGATACAA
1243691 TGTATCGATACA
1 TGTATCGATACA
1243703 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1243851 original size:52 final size:52
Alignment explanation
Indices: 1243807--1243935 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
1243797 CACTGATCTT
*
1243807 TGTATCGATACATGCAGGCAAATTTGCCTAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
1243859 TGTATCGATACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1243911 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
1243936 TCATATTTAG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:1247519 original size:68 final size:68
Alignment explanation
Indices: 1247410--1247547 Score: 267
Period size: 68 Copynumber: 2.0 Consensus size: 68
1247400 TGGATGTATC
*
1247410 GATATATCTGGACAAAAATATGACTCTTCCATACTTGTTGCATCCCAAACTCCTTGCCTCCACGA
1 GATATATCTAGACAAAAATATGACTCTTCCATACTTGTTGCATCCCAAACTCCTTGCCTCCACGA
1247475 AGG
66 AGG
1247478 GATATATCTAGACAAAAATATGACTCTTCCATACTTGTTGCATCCCAAACTCCTTGCCTCCACGA
1 GATATATCTAGACAAAAATATGACTCTTCCATACTTGTTGCATCCCAAACTCCTTGCCTCCACGA
1247543 AGG
66 AGG
1247546 GA
1 GA
1247548 GATGGGAAAT
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.30, C:0.28, G:0.14, T:0.28
Consensus pattern (68 bp):
GATATATCTAGACAAAAATATGACTCTTCCATACTTGTTGCATCCCAAACTCCTTGCCTCCACGA
AGG
Found at i:1248482 original size:20 final size:20
Alignment explanation
Indices: 1248445--1248496 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
1248435 CTATCTACAC
* * *
1248445 TTTTTTTTCATGCTTTTTCT
1 TTTTTTTTCTTTCGTTTTCT
1248465 TTTTTTTTCTTTCGTTTTCT
1 TTTTTTTTCTTTCGTTTTCT
* *
1248485 CTTTTTTGCTTT
1 TTTTTTTTCTTT
1248497 TCTTATTTGG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.02, C:0.15, G:0.06, T:0.77
Consensus pattern (20 bp):
TTTTTTTTCTTTCGTTTTCT
Found at i:1252396 original size:13 final size:13
Alignment explanation
Indices: 1252378--1252405 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1252368 CATTAATAAA
1252378 TGTATCGATACAT
1 TGTATCGATACAT
1252391 TGTATCGATACAT
1 TGTATCGATACAT
1252404 TG
1 TG
1252406 ATCATTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1260537 original size:15 final size:15
Alignment explanation
Indices: 1260491--1260545 Score: 83
Period size: 16 Copynumber: 3.5 Consensus size: 15
1260481 GCACCCTCCG
1260491 CAAAAAAAAAAAAAA
1 CAAAAAAAAAAAAAA
1260506 CAAAACAAAAAAAAAA
1 CAAAA-AAAAAAAAAA
*
1260522 CAAAAACAAAAAAAA
1 CAAAAAAAAAAAAAA
1260537 CAACAAAAA
1 CAA-AAAAA
1260546 GGGTCCGAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
15 17 0.47
16 19 0.53
ACGTcount: A:0.87, C:0.13, G:0.00, T:0.00
Consensus pattern (15 bp):
CAAAAAAAAAAAAAA
Found at i:1260541 original size:18 final size:17
Alignment explanation
Indices: 1260492--1260545 Score: 85
Period size: 17 Copynumber: 3.2 Consensus size: 17
1260482 CACCCTCCGC
1260492 AAAA-AAAAAAAAAAC-
1 AAAACAAAAAAAAAACA
1260507 AAAACAAAAAAAAAACA
1 AAAACAAAAAAAAAACA
1260524 AAAACAAAAAAAACAACA
1 AAAACAAAAAAAA-AACA
1260542 AAAA
1 AAAA
1260546 GGGTCCGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
15 4 0.11
16 11 0.31
17 13 0.36
18 8 0.22
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAAAAAACA
Found at i:1260545 original size:1 final size:1
Alignment explanation
Indices: 1260492--1260536 Score: 54
Period size: 1 Copynumber: 45.0 Consensus size: 1
1260482 CACCCTCCGC
* * * *
1260492 AAAAAAAAAAAAAACAAAACAAAAAAAAAACAAAAACAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1260537 CAACAAAAAG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 36 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:1262136 original size:27 final size:27
Alignment explanation
Indices: 1261987--1262222 Score: 171
Period size: 27 Copynumber: 8.7 Consensus size: 27
1261977 AGATACTCCT
*
1261987 CACCCTTTTAAGCCCACAACTTCGTGG
1 CACCCTTTTAAGCCCACAACTCCGTGG
* *
1262014 CACCCTTTTAAGCCCATAACTCCAT-G
1 CACCCTTTTAAGCCCACAACTCCGTGG
1262040 -A----TTTAAGCCCACAACTCCGTGG
1 CACCCTTTTAAGCCCACAACTCCGTGG
* *
1262062 CACCCTTTTAAGTCCACGACT-CGTGG
1 CACCCTTTTAAGCCCACAACTCCGTGG
* * *
1262088 CACCCTTTTAAGCCTACGACTCTGTGG
1 CACCCTTTTAAGCCCACAACTCCGTGG
* * * *
1262115 CACCCTTTTAAGTCCATAACTCCATGA
1 CACCCTTTTAAGCCCACAACTCCGTGG
* *
1262142 CACCTTTTTCTTTCCAAAAGCCCACAACTCTGTGG
1 CACC-----CTTT---TAAGCCCACAACTCCGTGG
* * *
1262177 CACCCTTTTAAGTCCACGACTCCTTGG
1 CACCCTTTTAAGCCCACAACTCCGTGG
* *
1262204 CACTCTTCTAAAGCCCACA
1 CACCCTT-TTAAGCCCACA
1262223 CAGGTCGGTG
Statistics
Matches: 161, Mismatches: 32, Indels: 31
0.72 0.14 0.14
Matches are distributed among these distances:
21 17 0.11
22 1 0.01
23 1 0.01
25 1 0.01
26 25 0.16
27 83 0.52
28 8 0.05
30 4 0.02
32 4 0.02
35 17 0.11
ACGTcount: A:0.24, C:0.36, G:0.13, T:0.28
Consensus pattern (27 bp):
CACCCTTTTAAGCCCACAACTCCGTGG
Found at i:1262148 original size:53 final size:52
Alignment explanation
Indices: 1261990--1262192 Score: 184
Period size: 53 Copynumber: 3.8 Consensus size: 52
1261980 TACTCCTCAC
*
1261990 CCTTTTAAGCCCACAACT-TCGTGGCACCCTTTTAAGCCCATAACTCCATG-A
1 CCTTTTAAGCCCACAACTCT-GTGGCACCCTTTTAAGTCCATAACTCCATGCA
* ** *
1262041 ---TTTAAGCCCACAACTCCGTGGCACCCTTTTAAGTCCACGACT-CGTGGCA
1 CCTTTTAAGCCCACAACTCTGTGGCACCCTTTTAAGTCCATAACTCCAT-GCA
* *
1262090 CCCTTTTAAGCCTACGACTCTGTGGCACCCTTTTAAGTCCATAACTCCATGACA
1 -CCTTTTAAGCCCACAACTCTGTGGCACCCTTTTAAGTCCATAACTCCATG-CA
1262144 CCTTTTTCTTTCCAAAAGCCCACAACTCTGTGGCACCCTTTTAAGTCCA
1 CC----T-TTT----AAGCCCACAACTCTGTGGCACCCTTTTAAGTCCA
1262193 CGACTCCTTG
Statistics
Matches: 121, Mismatches: 13, Indels: 25
0.76 0.08 0.16
Matches are distributed among these distances:
47 2 0.02
48 38 0.31
49 1 0.01
53 40 0.33
54 4 0.03
57 1 0.01
58 3 0.02
62 32 0.26
ACGTcount: A:0.24, C:0.34, G:0.13, T:0.29
Consensus pattern (52 bp):
CCTTTTAAGCCCACAACTCTGTGGCACCCTTTTAAGTCCATAACTCCATGCA
Done.