Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold440
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 783396
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Warning! 499 characters in sequence are not A, C, G, or T
File 6 of 6
Found at i:667808 original size:20 final size:20
Alignment explanation
Indices: 667760--667814 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
667750 GTTTACCTAG
667760 ATGTATCGATACATTGCTCA
1 ATGTATCGATACATTGCTCA
* * *
667780 TTGTTTCGATACATT-TTACA
1 ATGTATCGATACATTGCT-CA
667800 ATGTATCGATACATT
1 ATGTATCGATACATT
667815 CAGGTATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTGCTCA
Found at i:670372 original size:28 final size:28
Alignment explanation
Indices: 670340--670412 Score: 110
Period size: 28 Copynumber: 2.6 Consensus size: 28
670330 TTTTTCATCA
*
670340 GGGATACTCCAATCCTGTTATTTTCGAG
1 GGGATACTCCAACCCTGTTATTTTCGAG
**
670368 GGGATACTCCAACCCCATTATTTTCGAG
1 GGGATACTCCAACCCTGTTATTTTCGAG
*
670396 GGGATACCCCAACCCTG
1 GGGATACTCCAACCCTG
670413 GCATTATTTC
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (28 bp):
GGGATACTCCAACCCTGTTATTTTCGAG
Found at i:670499 original size:79 final size:79
Alignment explanation
Indices: 670368--670625 Score: 221
Period size: 79 Copynumber: 3.3 Consensus size: 79
670358 TATTTTCGAG
* * * * * ***** * *
670368 GGGATACTCCAACCCCATTATTTTCGAGGGGATACCCCAACCCTGGCATTATTTCTAAAATATTA
1 GGGATACTCCAACCCCGTTATTTCCGAGAGAATACTCCAACCCCAATTTTATTTCTAAAACATCA
*
670433 ATTTCTCATAATCG
66 ATTTCTCATAATCA
* * * * *
670447 GGGATACTCCAACCCTGTTATTTCTGAGAGAATACTCTAACCCCGATTTTATTTTTAAAACATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGAGAATACTCCAACCCCAATTTTATTTCTAAAACATCA
* * *
670512 ATTTTTTATAGTCA
66 ATTTCTCATAATCA
* * * * * *
670526 GGGATACTTCATCCCCGTTATTTCCGAGGGGATACTCCAATCCCAATTTTATTTC-AAATCATCA
1 GGGATACTCCAACCCCGTTATTTCCGAGAGAATACTCCAACCCCAATTTTATTTCTAAAACATCA
* * *
670590 ATTTTTCACAACCA
66 ATTTCTCATAATCA
* *
670604 GTGATACTTCAACCCCGTTATT
1 GGGATACTCCAACCCCGTTATT
670626 ATCTCCAAAA
Statistics
Matches: 143, Mismatches: 36, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
78 38 0.27
79 105 0.73
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.34
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCGAGAGAATACTCCAACCCCAATTTTATTTCTAAAACATCA
ATTTCTCATAATCA
Found at i:671714 original size:13 final size:13
Alignment explanation
Indices: 671696--671721 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
671686 CAATTTTTTG
671696 TGTATCGATACAT
1 TGTATCGATACAT
671709 TGTATCGATACAT
1 TGTATCGATACAT
671722 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:671733 original size:32 final size:33
Alignment explanation
Indices: 671676--671739 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
671666 TACACGCTAA
**
671676 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
671709 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
671740 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:686407 original size:51 final size:52
Alignment explanation
Indices: 686334--686458 Score: 216
Period size: 51 Copynumber: 2.4 Consensus size: 52
686324 AATATGAAAT
*
686334 TTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCT-GGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
* *
686385 TTTGCCTGCATGTATCGATACATTTTATTGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
686437 TTTGCCTGCATGTATCGATACA
1 TTTGCCTGCATGTATCGATACA
686459 AAGATCAGTG
Statistics
Matches: 70, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 42 0.60
52 28 0.40
ACGTcount: A:0.27, C:0.18, G:0.18, T:0.37
Consensus pattern (52 bp):
TTTGCCTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAA
Found at i:686470 original size:52 final size:50
Alignment explanation
Indices: 686334--686478 Score: 202
Period size: 51 Copynumber: 2.8 Consensus size: 50
686324 AATATGAAAT
*
686334 TTTGCCTACATGTATCGATACATTTAATAGTGTATCGATACATCTGGCAAA
1 TTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCTGGCAAA
* *
686385 TTTGCCTGCATGTATCGATACATTTTATTGTGTATCGATACATCTGGGCAAA
1 TTTGCCTGCATGTATCGATACA-TTAATAGTGTATCGATACATCT-GGCAAA
*
686437 TTTGCCTGCATGTATCGATACA-AAGATCAGTGTATCGATACA
1 TTTGCCTGCATGTATCGATACATTA-AT-AGTGTATCGATACA
686479 ATGTATCGAT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
51 44 0.52
52 41 0.48
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (50 bp):
TTTGCCTGCATGTATCGATACATTAATAGTGTATCGATACATCTGGCAAA
Found at i:686485 original size:13 final size:13
Alignment explanation
Indices: 686467--686491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
686457 CAAAGATCAG
686467 TGTATCGATACAA
1 TGTATCGATACAA
686480 TGTATCGATACA
1 TGTATCGATACA
686492 GTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:686558 original size:19 final size:18
Alignment explanation
Indices: 686534--686627 Score: 82
Period size: 19 Copynumber: 5.6 Consensus size: 18
686524 TAGCTTAAAT
686534 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
686553 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
686566 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
686585 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
686598 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
686618 TGTATCGATA
1 TGTATCGATA
686628 TAAATCATTG
Statistics
Matches: 62, Mismatches: 0, Indels: 25
0.71 0.00 0.29
Matches are distributed among these distances:
13 22 0.35
14 2 0.03
16 4 0.06
18 1 0.02
19 23 0.37
20 10 0.16
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:686571 original size:13 final size:13
Alignment explanation
Indices: 686553--686609 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
686543 ACAAAACTTA
686553 TGTATCGATACAT
1 TGTATCGATACAT
686566 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
686584 ATGTATCGATACAT
1 -TGTATCGATACAT
686598 TGTATCGATACA
1 TGTATCGATACA
686610 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:686573 original size:32 final size:32
Alignment explanation
Indices: 686532--686627 Score: 174
Period size: 32 Copynumber: 3.0 Consensus size: 32
686522 AGTAGCTTAA
*
686532 ATTGTATCGATACAAAACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
686564 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAACACTTATGTATCGATAC
686596 ATTGTATCGATACAACACTTTATGTATCGATA
1 ATTGTATCGATACAACAC-TTATGTATCGATA
686628 TAAATCATTG
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.79
33 13 0.21
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAACACTTATGTATCGATAC
Found at i:687437 original size:48 final size:48
Alignment explanation
Indices: 687371--687595 Score: 225
Period size: 48 Copynumber: 4.6 Consensus size: 48
687361 GTTAGACTTG
* * * *
687371 AAGGTGACAATGTGCTGATTCAAGGTCAACGACATTGGCCTTAAAGAC
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGAC
* * * * **
687419 AAGGTGCCAATATACTGATTCAAGGCCAGCGATATTGGGCTTAAAGGT
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGAC
* * * * **
687467 AAGGTACCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTG
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAA-GAC
* * *
687516 AAGGTGCCAATATGCTGATTCAAGGCCAACGATATTAGACTTAAAGGTGCC
1 AAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAA---GAC
*
687567 AAAGGCGCCAATATGCTGATTCAAGGCCA
1 -AAGGTGCCAATATGCTGATTCAAGGCCA
687596 GCGATGAAGT
Statistics
Matches: 146, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
48 78 0.53
49 40 0.27
51 1 0.01
52 27 0.18
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.23
Consensus pattern (48 bp):
AAGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGACTTAAAGAC
Found at i:687559 original size:97 final size:97
Alignment explanation
Indices: 687378--687599 Score: 284
Period size: 97 Copynumber: 2.3 Consensus size: 97
687368 TTGAAGGTGA
* * *
687378 CAATGTGCTGATTCAAGGTCAACGACATTGGCCTTAAAGACAAGGTGCCAATATACTGATTCAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATACTGATTCAAG
* * * *
687443 GCCAGCGATATTGGGCTTAAAGGT-AAGGTAC
66 GCCAACGATATTAGACTTAAAGGTCAAGGCAC
* ** *
687474 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGGTGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAA-GACAAGGTGCCAATATACTGATTCAA
*
687539 GGCCAACGATATTAGACTTAAAGGTGCCAAAGGCGC
65 GGCCAACGATATTAGACTTAAAGGT--C-AAGGCAC
*
687575 CAATATGCTGATTCAAGGCCAGCGA
1 CAATGTGCTGATTCAAGGCCAGCGA
687600 TGAAGTGCCA
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
96 34 0.32
97 45 0.42
101 28 0.26
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.23
Consensus pattern (97 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATACTGATTCAAG
GCCAACGATATTAGACTTAAAGGTCAAGGCAC
Found at i:687670 original size:43 final size:43
Alignment explanation
Indices: 687365--687730 Score: 176
Period size: 48 Copynumber: 8.0 Consensus size: 43
687355 GCAATAGTTA
* * * * *
687365 GACTTGAAGGTGACAATGTGCTGATTCAAGGTCAACGACATTG
1 GACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* * * * *
687408 GCCTTAAAGACAAGGTGCCAATATACTGATTCAAGGCCAGCGATATTG
1 GACTT----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
687456 GGCTTAAAGGTAAGGTACCAATGTGCTGATTCAAGGCCAGCTACATTG
1 GACTTAAAGGT---G--CCAATGTGCTGATTCAAGGCCAGCTACATTG
* * * * *
687504 GACTTAAAGGTGAAGGTGCCAATATGCTGATTCAAGGCCAACGATATTA
1 GACTT--A----AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
687553 GACTTAAAGGTGCCAAAGGCGCCAATATGCTGATTCAAGGCCAG---C----
1 GACTTAAAGGT---------GCCAATGTGCTGATTCAAGGCCAGCTACATTG
*
687598 GA--TGAA-GTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
1 GACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* *
687638 GACTTAAAGGTGCCAATGTGCTGATTCCAGGCCGGCTACATTG
1 GACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
* * *
687681 GACTTAAAGATGAAGGTACCAATGTGCTGATTCAAGGCCAACTATATTG
1 GACTT----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
687730 G
1 G
687731 GTTTAAAAGA
Statistics
Matches: 251, Mismatches: 31, Indels: 76
0.70 0.09 0.21
Matches are distributed among these distances:
33 23 0.09
36 1 0.00
40 2 0.01
42 5 0.02
43 54 0.22
44 1 0.00
45 2 0.01
46 1 0.00
47 2 0.01
48 66 0.26
49 64 0.25
50 1 0.00
51 1 0.00
52 23 0.09
54 5 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
GACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTG
Found at i:687737 original size:49 final size:50
Alignment explanation
Indices: 687642--687770 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 50
687632 ACATTGGACT
* **
687642 TAAAGGTGCCAATGTGCTGATTCCAGGCCGGCTACATTGGACTT-AAAGA
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAAGA
* * * **
687691 TGAAGGTACCAATGTGCTGATTCAAGGCCAACTATATTGGGTTTAAAAGA
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAAGA
* * *
687741 TAAAGGCGCCAATATGCTGGTTCAAGGCCA
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCA
687771 GCGATATCAG
Statistics
Matches: 66, Mismatches: 13, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
49 36 0.55
50 30 0.45
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.25
Consensus pattern (50 bp):
TAAAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAAGA
Found at i:687943 original size:30 final size:29
Alignment explanation
Indices: 687847--688374 Score: 495
Period size: 29 Copynumber: 17.9 Consensus size: 29
687837 ATGTGCTTTT
* *
687847 AAAGGTTGCCACTGACTTGTGGGCTTT-T
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
* *
687875 AAA-GATTGCCACTGACTTGTGGGATTT-T
1 AAAGGA-TGCCACTGACTTGTGGGCTTTGA
*
687903 AAAGGTTGCCACTGACTTGTGGGCTTTTGA
1 AAAGGATGCCACTGACTTGTGGGC-TTTGA
* * *
687933 AAAGGGTGCCACTAACTTGTGGGCTTAAAAGGA
1 AAAGGATGCCACTGACTTGTGGGCTT----TGA
* * * * * *
687966 AAAAGAGTGCTACGGAGTTGTGAGCTTACAAAAGA
1 AAAGGA-TGCCACTGACTTGTGGGCTT-----TGA
* * * *
688001 AAAAGAGTGCCACGGAGTTGTGGACTTTGGA
1 AAAGGA-TGCCACTGACTTGTGGGCTTT-GA
* *
688032 AAA-GATGCCACCGACTTGTGGGCTTCGGA
1 AAAGGATGCCACTGACTTGTGGGCTT-TGA
* *
688061 AAAGGGTGCCACTGATTTGTGGGCTTTG-
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
*
688089 -AAGGTTGCCACTGACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
*
688117 AAAAGATGCCACTGACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
* *
688146 AGAAGGGTGCCACTGATTTGTGGGCTTTG-
1 A-AAGGATGCCACTGACTTGTGGGCTTTGA
*
688175 -AA-GATTGCCACTGACTTGTGGACTTTGA
1 AAAGGA-TGCCACTGACTTGTGGGCTTTGA
*
688203 AAAAGATGCCACTGACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
*
688232 AAAAGATGCCACTGACTTGTGGGCTTTGA
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
*
688261 AAAAGATGCCACTGACTTGTGGGCTTTGAA
1 AAAGGATGCCACTGACTTGTGGGCTTTG-A
* *
688291 AAAGGGTGCCACTGATTTGTGGGCTTTG-
1 AAAGGATGCCACTGACTTGTGGGCTTTGA
688319 -AA-GATTGCCACTGACTTGTGGGCTTTGAA
1 AAAGGA-TGCCACTGACTTGTGGGCTTTG-A
*
688348 AAAAGATGCCACTGACTTGTGGGCTTT
1 AAAGGATGCCACTGACTTGTGGGCTTT
688375 TGAAGGGTGA
Statistics
Matches: 429, Mismatches: 45, Indels: 50
0.82 0.09 0.10
Matches are distributed among these distances:
26 2 0.00
27 71 0.17
28 44 0.10
29 137 0.32
30 118 0.28
31 7 0.02
33 6 0.01
34 15 0.03
35 29 0.07
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (29 bp):
AAAGGATGCCACTGACTTGTGGGCTTTGA
Found at i:687951 original size:86 final size:85
Alignment explanation
Indices: 687847--688374 Score: 463
Period size: 86 Copynumber: 6.0 Consensus size: 85
687837 ATGTGCTTTT
* * * * *
687847 AAAGGTTGCCACTGACTTGTGGGCTTTTAAAGATTGCCACTGACTTGTGGGATTTTAAAGGTTGC
1 AAAGGATGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGTTGC
687912 CACTGACTTGTGGGCTTTTGA
66 CACTGACTTGTGGGC-TTTGA
* * * * * * * *
687933 AAAGGGTGCCACTAACTTGTGGGCTTAAAAGGAAAAAGAGTGCTACGGAGTTGTGAGCTTACAAA
1 AAAGGATGCCACTGACTTGTGGGCTT------TAAAAGAGTGCCACTGACTTGTGGGCTT-TAAA
* * * *
687998 AGAAAAAGAGTGCCACGGAGTTGTGGACTTTGGA
59 AG-----G-TTGCCACTGACTTGTGGGCTTT-GA
* * * * *
688032 AAA-GATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCACTGATTTGTGGGCTTT-GAAGGTT
1 AAAGGATGCCACTGACTTGTGGGCTT--TAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGTT
688095 GCCACTGACTTGTGGGCTTTGA
64 GCCACTGACTTGTGGGCTTTGA
* * * * *
688117 AAAAGATGCCACTGACTTGTGGGCTTTGAAGAAGGGTGCCACTGATTTGTGGGCTTT-GAAGATT
1 AAAGGATGCCACTGACTTGTGGGCTTT-AA-AAGAGTGCCACTGACTTGTGGGCTTTAAAAGGTT
*
688181 GCCACTGACTTGTGGACTTTGA
64 GCCACTGACTTGTGGGCTTTGA
* * *
688203 AAAAGATGCCACTGACTTGTGGGCTTTGAAAA-AGATGCCACTGACTTGTGGGCTTTGAAAAAGA
1 AAAGGATGCCACTGACTTGTGGGCTTT-AAAAGAG-TGCCACTGACTTGTGGGCTTT-AAAAGGT
688267 TGCCACTGACTTGTGGGCTTTGAA
63 TGCCACTGACTTGTGGGCTTTG-A
* * * * * *
688291 AAAGGGTGCCACTGATTTGTGGGCTTT-GAAGATTGCCACTGACTTGTGGGCTTTGAAAAAAGAT
1 AAAGGATGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCTTT--AAAAGGTT
688355 GCCACTGACTTGTGGGCTTT
64 GCCACTGACTTGTGGGCTTT
688375 TGAAGGGTGA
Statistics
Matches: 370, Mismatches: 49, Indels: 45
0.80 0.11 0.10
Matches are distributed among these distances:
84 1 0.00
85 29 0.08
86 169 0.46
87 53 0.14
88 25 0.07
92 23 0.06
93 4 0.01
94 23 0.06
98 23 0.06
99 20 0.05
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (85 bp):
AAAGGATGCCACTGACTTGTGGGCTTTAAAAGAGTGCCACTGACTTGTGGGCTTTAAAAGGTTGC
CACTGACTTGTGGGCTTTGA
Found at i:687987 original size:34 final size:35
Alignment explanation
Indices: 687949--688023 Score: 116
Period size: 35 Copynumber: 2.2 Consensus size: 35
687939 TGCCACTAAC
* *
687949 TTGTGGGCTTA-AAAGGAAAAAGAGTGCTACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
*
687983 TTGTGAGCTTACAAAAGAAAAAGAGTGCCACGGAG
1 TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
688018 TTGTGG
1 TTGTGG
688024 ACTTTGGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
34 10 0.28
35 26 0.72
ACGTcount: A:0.35, C:0.11, G:0.33, T:0.21
Consensus pattern (35 bp):
TTGTGGGCTTACAAAAGAAAAAGAGTGCCACGGAG
Found at i:688411 original size:144 final size:142
Alignment explanation
Indices: 687999--688374 Score: 468
Period size: 144 Copynumber: 2.6 Consensus size: 142
687989 GCTTACAAAA
* * * * * * *
687999 GAAAAAGAGTGCCACGGAGTTGTGGACTTTGGAAAAGA-TGCCACCGACTTGTGGGCTTCGGAAA
1 GAAAAAGGGTGCCACTGATTTGTGGGCTTT-G--AAGATTGCCACTGACTTGTGGACTT-TGAAA
* * * * * * ** *
688063 AGGGTGCCACTGATTTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGAAAAAGATGCC
62 AAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCAATGACTAAT-GCCTTTGAAAAAGATGCC
688127 ACTGACTTGTGGGCTTT
126 ACTGACTTGTGGGCTTT
*
688144 GAAGAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGACTTTGAAAAAGA
1 GAAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGACTTTGAAAAAGA
* ** *
688209 TGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACTGACTTGTGGGCTTTGAAAAAGATGCCACT
66 TGCCACTGACTTGTGGGCTTTG-AAAAGATGCCAATGACTAAT-GCCTTTGAAAAAGATGCCACT
688274 GACTTGTGGGCTTT
129 GACTTGTGGGCTTT
*
688288 GAAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGGCTTTGAAAAAAG
1 GAAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGACTTTG-AAAAAG
688353 ATGCCACTGACTTGTGGGCTTT
65 ATGCCACTGACTTGTGGGCTTT
688375 TGAAGGGTGA
Statistics
Matches: 212, Mismatches: 15, Indels: 8
0.90 0.06 0.03
Matches are distributed among these distances:
142 31 0.15
143 18 0.08
144 110 0.52
145 53 0.25
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (142 bp):
GAAAAAGGGTGCCACTGATTTGTGGGCTTTGAAGATTGCCACTGACTTGTGGACTTTGAAAAAGA
TGCCACTGACTTGTGGGCTTTGAAAAGATGCCAATGACTAATGCCTTTGAAAAAGATGCCACTGA
CTTGTGGGCTTT
Found at i:689879 original size:28 final size:28
Alignment explanation
Indices: 689816--689898 Score: 98
Period size: 28 Copynumber: 3.0 Consensus size: 28
689806 TCGGACCCTT
* *
689816 TTTGTTGTTGTTTT-TTTTTGTTTGTTTG
1 TTTGTT-TTTTTTTCTTTTTGTTTTTTTG
689844 TTTGTTTTTTTTTCTTTTTGTTTTTTCTG
1 TTTGTTTTTTTTTCTTTTTGTTTTTT-TG
* *
689873 TTT-TTTTTCTTTCATTTTGTTTTTTT
1 TTTGTTTTTTTTTCTTTTTGTTTTTTT
689899 TAGAGGATGC
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
27 7 0.14
28 37 0.76
29 5 0.10
ACGTcount: A:0.01, C:0.05, G:0.12, T:0.82
Consensus pattern (28 bp):
TTTGTTTTTTTTTCTTTTTGTTTTTTTG
Found at i:689881 original size:24 final size:23
Alignment explanation
Indices: 689813--689884 Score: 87
Period size: 24 Copynumber: 3.2 Consensus size: 23
689803 CATTCGGACC
689813 CTTTTTG-TTG-TTGTTTTTTTT
1 CTTTTTGTTTGTTTGTTTTTTTT
*
689834 -TGTTTGTTTGTTTGTTTTTTTTT
1 CTTTTTGTTTGTTTG-TTTTTTTT
*
689857 CTTTTTGTTTTTTCTGTTTTTTTT
1 CTTTTTGTTTGTT-TGTTTTTTTT
689881 CTTT
1 CTTT
689885 CATTTTGTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
20 5 0.12
21 3 0.07
22 3 0.07
23 8 0.19
24 22 0.51
25 2 0.05
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.82
Consensus pattern (23 bp):
CTTTTTGTTTGTTTGTTTTTTTT
Found at i:703889 original size:32 final size:33
Alignment explanation
Indices: 703848--703913 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
703838 AGTAGCTTAA
703848 ATTGTATCGATACAAAAC-TTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
* *
703880 ATTGTATCGATGCAACACTTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTTATGTATCGATAC
703913 A
1 A
703914 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.35, C:0.17, G:0.14, T:0.35
Consensus pattern (33 bp):
ATTGTATCGATACAAAACTTTATGTATCGATAC
Found at i:705171 original size:17 final size:16
Alignment explanation
Indices: 705149--705202 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 16
705139 TTTCTCTTCT
*
705149 AAAAAAAAACAATAACA
1 AAAAAAAAACAA-AAAA
705166 AAAAAAAAACAAAAAA
1 AAAAAAAAACAAAAAA
705182 AAAAACAAAACAAAGAAA
1 AAAAA-AAAACAAA-AAA
705200 AAA
1 AAA
705203 GAGAGAAAAG
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
16 8 0.24
17 20 0.59
18 6 0.18
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (16 bp):
AAAAAAAAACAAAAAA
Found at i:705180 original size:12 final size:12
Alignment explanation
Indices: 705151--705191 Score: 57
Period size: 12 Copynumber: 3.3 Consensus size: 12
705141 TCTCTTCTAA
705151 AAAAAAACAATAAC
1 AAAAAAA-AA-AAC
705165 -AAAAAAAAAAC
1 AAAAAAAAAAAC
705176 AAAAAAAAAAAC
1 AAAAAAAAAAAC
705188 AAAA
1 AAAA
705192 CAAAGAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
11 3 0.12
12 17 0.65
13 6 0.23
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:706271 original size:61 final size:59
Alignment explanation
Indices: 706176--706552 Score: 454
Period size: 61 Copynumber: 6.4 Consensus size: 59
706166 TCCTTTCACT
706176 TTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-C
* * *
706237 TTTCAGTCCTCAAAGAGCAGGATGCCTTTTCCTTTCAAAGCCTACATAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCA-C
* *
706298 TTTCAGTCCTCAAAGAGCAGGA---C--ACCTTTCAAAGCCCACACAAGTTGGTGGCAT
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* * *
706352 TTTCCAGTCCTCAAA-AGCAGGA-----TGCCTTTCAAAGCCCACAGAAGTTGGTGGCAT
1 TTT-CAGTCCTCAAAGAGCAGGACGCCTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
706406 TTTCCAGTCCTCAAAGAGCAGGACGCCTTAT-CTTTCAAAGCCCATACAAGTTGGTGGCATT
1 TTT-CAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTCAAAGCCCACACAAGTTGGTGGCA-C
* *
706467 TTTCAGTCCTCAAAGAGAAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCAC
1 TTTCAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTCAAAGCCCACACAAGTTGGTGGCAC
* *
706527 TTCCTAGTCCTCAAAGAGTAGGACGC
1 TTTC-AGTCCTCAAAGAGCAGGACGC
706553 TCTCTCATTT
Statistics
Matches: 285, Mismatches: 19, Indels: 24
0.87 0.06 0.07
Matches are distributed among these distances:
54 54 0.19
55 45 0.16
58 1 0.00
60 55 0.19
61 130 0.46
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (59 bp):
TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTCAAAGCCCACACAAGTTGGTGGCAC
Found at i:706633 original size:160 final size:158
Alignment explanation
Indices: 706410--706702 Score: 446
Period size: 160 Copynumber: 1.8 Consensus size: 158
706400 TGGCATTTTC
* * *
706410 CAGTCCTCAAAGAGCAGGACGCCTTATCTTTCAAAGCCCATACAAGTTGGTGGCATTTTTCAGTC
1 CAGTCCTCAAAGAGCAGGACGCCTTATCTTTCAAAGCCCACACAAGTTGGTGGAACTTTTCAGTC
706475 CTCAAAGAGAAGGACGCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCT
66 CTCAAAGAGAAGGACG-CTT-TCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCC-AGTCCT
706538 CAAAGAGTAGGACGCTCTCTCATTTCACCTT
128 CAAAGAGTAGGACGCTCTCTCATTTCACCTT
* * *
706569 CAGTCCTCAAAGAGCAGGACTCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCAGT
1 CAGTCCTCAAAGAGCAGGACGCCTTAT-CTTTCAAAGCCCACACAAGTTGGTGGAACTTTTCAGT
* * *
706634 CCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTC
65 CCTCAAAGAGAAGGACGCTTTCCTTTT-CAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTC
706699 AAAG
129 AAAG
706703 GGCATGACGC
Statistics
Matches: 121, Mismatches: 9, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
158 6 0.05
159 28 0.23
160 82 0.68
161 5 0.04
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (158 bp):
CAGTCCTCAAAGAGCAGGACGCCTTATCTTTCAAAGCCCACACAAGTTGGTGGAACTTTTCAGTC
CTCAAAGAGAAGGACGCTTTCCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAA
AGAGTAGGACGCTCTCTCATTTCACCTT
Found at i:706639 original size:99 final size:99
Alignment explanation
Indices: 706468--706648 Score: 301
Period size: 99 Copynumber: 1.8 Consensus size: 99
706458 GGTGGCATTT
*
706468 TTCAGTCCTCAAAGAGAAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCTA
1 TTCAGTCCTCAAAGAGAAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTA
*
706533 GTCCTCAAAGAGTAGGACGCTCTCTCATTTCACC
66 GTCCTCAAAGAGCAGGACGCTCTCTCATTTCACC
* * *
706567 TTCAGTCCTCAAAGAGCAGGACTCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTT-TTC
1 TTCAGTCCTCAAAGAGAAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCT-
706631 AGTCCTCAAAGAGCAGGA
65 AGTCCTCAAAGAGCAGGA
706649 TGCTTTCTTT
Statistics
Matches: 76, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
98 1 0.01
99 75 0.99
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.26
Consensus pattern (99 bp):
TTCAGTCCTCAAAGAGAAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTCCTA
GTCCTCAAAGAGCAGGACGCTCTCTCATTTCACC
Found at i:706667 original size:61 final size:60
Alignment explanation
Indices: 706567--706770 Score: 259
Period size: 61 Copynumber: 3.4 Consensus size: 60
706557 TCATTTCACC
* * *
706567 TTCAGTCCTCAAAGAGCAGGACTCCTTCTCCTTTT-AAAGCCCACACAAGTTGGTGGAACTT
1 TTCAGTCCTCAAAGAGCAGGA-TGCTT-TCTTTTTCAAAGCCCACACAAGTTGGTGGCACTT
*
706628 TTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCACCT
1 TTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT-CAAAGCCCACACAAGTTGGTGGCACTT
* * * * *
706689 TCCAGTCCTCAAAGGGCATGACGCCTTT-TCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
1 TTCAGTCCTCAAAGAGCAGGATG-CTTTCT-TTTTCAAAGCCCACACAAGTTGGTGGCACTT
*
706750 TTCAGTCCTCAAAGAGTAGGA
1 TTCAGTCCTCAAAGAGCAGGA
706771 CACACTTCCT
Statistics
Matches: 125, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
59 6 0.05
60 4 0.03
61 107 0.86
62 8 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (60 bp):
TTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTCAAAGCCCACACAAGTTGGTGGCACTT
Found at i:706875 original size:42 final size:42
Alignment explanation
Indices: 706754--706887 Score: 110
Period size: 42 Copynumber: 3.1 Consensus size: 42
706744 GCACTTTTCA
* * **
706754 GTCCTCAAAGAGTAGGACACAC-TTCCTTCCCTTCTTTTCACTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTCCC-T-TTTT--CTTTT
* *
706799 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTTTTTCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTT
* * * *
706841 GTCCTCAGAGAGCAGGACGTA-TTTCGTTTCCCTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTT-ATTTCCCTTTTTCTTTT
*
706883 ATCCT
1 GTCCT
706888 TAAAAAACGG
Statistics
Matches: 74, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 3 0.04
42 41 0.55
44 4 0.05
45 20 0.27
46 6 0.08
ACGTcount: A:0.18, C:0.27, G:0.14, T:0.41
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTCCCTTTTTCTTTT
Found at i:707767 original size:13 final size:13
Alignment explanation
Indices: 707749--707774 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
707739 CATTATTCAA
707749 TGTATCGATACAT
1 TGTATCGATACAT
707762 TGTATCGATACAT
1 TGTATCGATACAT
707775 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:707772 original size:33 final size:33
Alignment explanation
Indices: 707729--707899 Score: 116
Period size: 33 Copynumber: 5.0 Consensus size: 33
707719 GCCAAAGAAA
* * *
707729 TGTATTGATACATTATTCAATGTATCGATACAT
1 TGTATCGATACATTACTCATTGTATCGATACAT
* *
707762 TGTATCGATACATCGA-TCTTTGTATCGATACAT
1 TGTATCGATACAT-TACTCATTGTATCGATACAT
* ** * *
707795 T-TA-GGA-AGTTTACCCAGATGTATCGATACATTTTGCAT
1 TGTATCGATACATTACTCA-TTGTATCGAT--A-----CAT
** *
707833 TGTATCGATACATCGCTCATTGTATCAATACAT
1 TGTATCGATACATTACTCATTGTATCGATACAT
707866 TGTATCGATACATTACTCATTGTATCGATACAT
1 TGTATCGATACATTACTCATTGTATCGATACAT
707899 T
1 T
707900 TTATAATGTA
Statistics
Matches: 103, Mismatches: 22, Indels: 26
0.68 0.15 0.17
Matches are distributed among these distances:
29 1 0.01
30 3 0.03
31 11 0.11
32 2 0.02
33 63 0.61
34 1 0.01
38 5 0.05
39 2 0.02
40 10 0.10
41 5 0.05
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATTACTCATTGTATCGATACAT
Found at i:707838 original size:20 final size:19
Alignment explanation
Indices: 707813--707920 Score: 86
Period size: 20 Copynumber: 5.8 Consensus size: 19
707803 TTTACCCAGA
*
707813 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTCT-CAT
*
707833 TGTATCGATACATCGCTCAT
1 TGTATCGATACAT-TCTCAT
*
707853 TGTATC---A-A-T-ACAT
1 TGTATCGATACATTCTCAT
707866 TGTATCGATACATTACTCAT
1 TGTATCGATACATT-CTCAT
*
707886 TGTATCGATACATT-TTAT
1 TGTATCGATACATTCTCAT
707904 AATGTATCGATACATTC
1 --TGTATCGATACATTC
707921 AGGCATTTTT
Statistics
Matches: 71, Mismatches: 6, Indels: 21
0.72 0.06 0.21
Matches are distributed among these distances:
13 9 0.13
16 2 0.03
17 2 0.03
18 4 0.06
20 53 0.75
21 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTCTCAT
Found at i:707868 original size:13 final size:13
Alignment explanation
Indices: 707850--707879 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
707840 ATACATCGCT
707850 CATTGTATCAATA
1 CATTGTATCAATA
*
707863 CATTGTATCGATA
1 CATTGTATCAATA
707876 CATT
1 CATT
707880 ACTCATTGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (13 bp):
CATTGTATCAATA
Found at i:710431 original size:79 final size:76
Alignment explanation
Indices: 710347--710519 Score: 186
Period size: 76 Copynumber: 2.2 Consensus size: 76
710337 CTCCGCAATC
* * * * * *
710347 GGGGATATTCCAACTCTGATTTTATTT-TCAAAACATTGACTTTTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGATTTTATTTCT-AAAACA-TCAATTTT-AC-ATCGGGAATACTCCAA
*
710411 CCCCGTTATTTCCGA
62 CCCAGTTATTTCCGA
* * * *
710426 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTTCATCGGGAATACTCCAATCTA
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTACATCGGGAATACTCCAACCCA
*
710491 GTTATTTTCGA
66 GTTATTTCCGA
*
710502 GGGGATACTCCAGCCCCG
1 GGGGATACTCCAACCCCG
710520 TTATTTTCGA
Statistics
Matches: 80, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
76 43 0.54
77 1 0.01
78 6 0.08
79 29 0.36
80 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (76 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTACATCGGGAATACTCCAACCCA
GTTATTTCCGA
Found at i:710546 original size:28 final size:28
Alignment explanation
Indices: 710491--710547 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
710481 CTCCAATCTA
* *
710491 GTTATTTTCGAGGGGATACTCCAGCCCC
1 GTTATTTTCGAGAGGATACTCCAACCCC
710519 GTTATTTTCGAGAGGATA-TCCCAACCCC
1 GTTATTTTCGAGAGGATACT-CCAACCCC
710547 G
1 G
710548 GCTTTATTTC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
27 1 0.04
28 25 0.96
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (28 bp):
GTTATTTTCGAGAGGATACTCCAACCCC
Found at i:710635 original size:79 final size:79
Alignment explanation
Indices: 710502--710782 Score: 314
Period size: 79 Copynumber: 3.6 Consensus size: 79
710492 TTATTTTCGA
* * *
710502 GGGGATACTCCAGCCCCGTTATTTTCGAGAGGATA-TCCCAACCCCGGCTTTATTTCTAAAATAT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACT-CCAACCCCGGTTTTATTTCTAAAATAT
*
710566 TAATTTCTCATAATC
65 CAATTTCTCATAATC
* * * *
710581 GAGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCTAACCCCGGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATC
* * *
710646 AATTTTTTATAGTC
66 AATTTCTCATAATC
* * * * * * * * *
710660 GGGGATACTTCAACCCCATTATTTCCGAGGGGATGCTCTAATCCTGATTTTATTTC-CAAATCAT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAT-AT
* * *
710724 CGATTTTTCATAACC
65 CAATTTCTCATAATC
*
710739 GGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCC
710783 TGTTATTATC
Statistics
Matches: 167, Mismatches: 33, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
78 3 0.02
79 163 0.98
80 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAATATC
AATTTCTCATAATC
Found at i:712813 original size:46 final size:46
Alignment explanation
Indices: 712679--712800 Score: 210
Period size: 45 Copynumber: 2.7 Consensus size: 46
712669 TATGATTCTT
* *
712679 TGATCACCACCATGGCGTTATTTCAATAAGTGATGCAAAGTCACTC
1 TGATCGCCACCATGGCGTTATTTCAATAAGTGATGCCAAGTCACTC
712725 TGATCGCCA-CATGGCGTTATTTCAATAAGTGATGCCAAGTCACTC
1 TGATCGCCACCATGGCGTTATTTCAATAAGTGATGCCAAGTCACTC
*
712770 TGATCGCCACCATGGCGTTATTACAATAAGT
1 TGATCGCCACCATGGCGTTATTTCAATAAGT
712801 AACACCAAGT
Statistics
Matches: 72, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
45 44 0.61
46 28 0.39
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (46 bp):
TGATCGCCACCATGGCGTTATTTCAATAAGTGATGCCAAGTCACTC
Found at i:718917 original size:6 final size:6
Alignment explanation
Indices: 718906--718984 Score: 112
Period size: 6 Copynumber: 13.8 Consensus size: 6
718896 TTCATTCCCT
* *
718906 CTCAGG CTCAGG -TCAGG CCCA-G --CAGG CTGAGG CTCAGG CTCAGG
1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG
718950 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAG
1 CTCAGG CTCAGG CTCAGG CTCAGG CTCAGG CTCAG
718985 ATCTAAGATC
Statistics
Matches: 66, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
3 2 0.03
4 1 0.02
5 6 0.09
6 57 0.86
ACGTcount: A:0.18, C:0.33, G:0.34, T:0.15
Consensus pattern (6 bp):
CTCAGG
Found at i:720786 original size:2 final size:2
Alignment explanation
Indices: 720779--720814 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
720769 TTTCGAGCTG
720779 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
720815 GAGAGAGAAC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:721792 original size:53 final size:53
Alignment explanation
Indices: 721704--721809 Score: 176
Period size: 53 Copynumber: 2.0 Consensus size: 53
721694 TAGACTTTCA
* *
721704 ACTAAGGACAGATTTAGTTAGTACTACGGGAATGGAGGTTGATCATCGTCGCT
1 ACTAAGGACAGACTTAGATAGTACTACGGGAATGGAGGTTGATCATCGTCGCT
* *
721757 ACTAAGGACAGACTTAGATAGTACTAGGGGCATGGAGGTTGATCATCGTCGCT
1 ACTAAGGACAGACTTAGATAGTACTACGGGAATGGAGGTTGATCATCGTCGCT
721810 GCTTTCGTCA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.26
Consensus pattern (53 bp):
ACTAAGGACAGACTTAGATAGTACTACGGGAATGGAGGTTGATCATCGTCGCT
Found at i:723638 original size:12 final size:12
Alignment explanation
Indices: 723621--723654 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
723611 CGTTTATAAA
723621 AGACAGACAAAC
1 AGACAGACAAAC
*
723633 AGACAGACAGAC
1 AGACAGACAAAC
*
723645 AGACACACAA
1 AGACAGACAA
723655 GGAAAAGCAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.56, C:0.26, G:0.18, T:0.00
Consensus pattern (12 bp):
AGACAGACAAAC
Found at i:725388 original size:98 final size:98
Alignment explanation
Indices: 725213--725396 Score: 305
Period size: 98 Copynumber: 1.9 Consensus size: 98
725203 ATTATAGATG
* * *
725213 CCATGTGGAAAGAGATAGAGGAGCTCAAGGGTGAACTCTCATCATGCAAATCAACTATTGATGGT
1 CCATGTGGAAAGAGATAGAGGAGCTCAAGGGTGAACTCGCATCATGCAAAACAACTATAGATGGT
725278 AGGTATTATCCATGACACCCATAAGATGGAGGT
66 AGGTATTATCCATGACACCCATAAGATGGAGGT
*
725311 CCATGTGGAAAGAGATGGAGGAGCTCAAGGGTGAACTCGCATCATGCAAAACAACTATAGATGGT
1 CCATGTGGAAAGAGATAGAGGAGCTCAAGGGTGAACTCGCATCATGCAAAACAACTATAGATGGT
* * *
725376 TGGTGTTGTCCATGACACCCA
66 AGGTATTATCCATGACACCCA
725397 AGCATAAGAT
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 79 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (98 bp):
CCATGTGGAAAGAGATAGAGGAGCTCAAGGGTGAACTCGCATCATGCAAAACAACTATAGATGGT
AGGTATTATCCATGACACCCATAAGATGGAGGT
Found at i:734191 original size:52 final size:52
Alignment explanation
Indices: 734043--734171 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
734033 CGAAATATGA
*
734043 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
734095 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
734147 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
734172 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:734198 original size:13 final size:13
Alignment explanation
Indices: 734180--734204 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
734170 CAAAGATCAG
734180 TGTATCGATACAA
1 TGTATCGATACAA
734193 TGTATCGATACA
1 TGTATCGATACA
734205 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:734271 original size:19 final size:17
Alignment explanation
Indices: 734243--734344 Score: 76
Period size: 19 Copynumber: 6.1 Consensus size: 17
734233 GTAGTAGCTT
734243 ACTTTGTATCGATACAAA
1 ACTTTGTATCGATAC-AA
734261 ACTTATGTATCGATAC--
1 ACTT-TGTATCGATACAA
734277 A--TTGTATCGATACAA
1 ACTTTGTATCGATACAA
*
734292 CACTTATGTATAGATAC--
1 -ACTT-TGTATCGATACAA
734309 A--TTGTATCGATACAA
1 ACTTTGTATCGATACAA
734324 CACTTTATGTATCGATACAA
1 -AC-TT-TGTATCGATACAA
734344 A
1 A
734345 TCATTGAAAT
Statistics
Matches: 68, Mismatches: 2, Indels: 27
0.70 0.02 0.28
Matches are distributed among these distances:
13 21 0.31
14 2 0.03
16 4 0.06
18 5 0.07
19 23 0.34
20 13 0.19
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (17 bp):
ACTTTGTATCGATACAA
Found at i:734284 original size:13 final size:13
Alignment explanation
Indices: 734266--734322 Score: 51
Period size: 13 Copynumber: 3.9 Consensus size: 13
734256 ACAAAACTTA
734266 TGTATCGATACAT
1 TGTATCGATACAT
734279 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
*
734297 ATGTATAGATACAT
1 -TGTATCGATACAT
734311 TGTATCGATACA
1 TGTATCGATACA
734323 ACACTTTATG
Statistics
Matches: 36, Mismatches: 2, Indels: 12
0.72 0.04 0.24
Matches are distributed among these distances:
13 20 0.56
14 1 0.03
16 6 0.17
18 1 0.03
19 8 0.22
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:734285 original size:32 final size:32
Alignment explanation
Indices: 734246--734342 Score: 167
Period size: 32 Copynumber: 3.0 Consensus size: 32
734236 GTAGCTTACT
*
734246 TTGTATCGATACAAAACTTATGTATCGATACA
1 TTGTATCGATACAACACTTATGTATCGATACA
*
734278 TTGTATCGATACAACACTTATGTATAGATACA
1 TTGTATCGATACAACACTTATGTATCGATACA
734310 TTGTATCGATACAACACTTTATGTATCGATACA
1 TTGTATCGATACAACAC-TTATGTATCGATACA
734343 AATCATTGAA
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 47 0.77
33 14 0.23
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35
Consensus pattern (32 bp):
TTGTATCGATACAACACTTATGTATCGATACA
Found at i:743447 original size:52 final size:52
Alignment explanation
Indices: 743299--743427 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
743289 CGAAATATGA
*
743299 AAATTTACCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
743351 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATTTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
743403 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
743428 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:743560 original size:20 final size:20
Alignment explanation
Indices: 743535--743600 Score: 83
Period size: 20 Copynumber: 3.6 Consensus size: 20
743525 ATTGATACAT
743535 TGTATCGATACAACACTTTA
1 TGTATCGATACAACACTTTA
743555 TGTATCGAT---ACA---T-
1 TGTATCGATACAACACTTTA
743568 TGTATCGATACAACACTTTA
1 TGTATCGATACAACACTTTA
743588 TGTATCGATACAA
1 TGTATCGATACAA
743601 ATCGTTGAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 9 0.23
14 1 0.03
16 3 0.08
17 3 0.08
19 1 0.03
20 22 0.56
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
TGTATCGATACAACACTTTA
Found at i:743565 original size:33 final size:33
Alignment explanation
Indices: 743502--743599 Score: 171
Period size: 33 Copynumber: 3.0 Consensus size: 33
743492 GTAGCTTACT
* *
743502 TTGTATCGATACAAAAC-TTATGTATTGATACA
1 TTGTATCGATACAACACTTTATGTATCGATACA
743534 TTGTATCGATACAACACTTTATGTATCGATACA
1 TTGTATCGATACAACACTTTATGTATCGATACA
743567 TTGTATCGATACAACACTTTATGTATCGATACA
1 TTGTATCGATACAACACTTTATGTATCGATACA
743600 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
32 16 0.25
33 47 0.75
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37
Consensus pattern (33 bp):
TTGTATCGATACAACACTTTATGTATCGATACA
Found at i:743573 original size:13 final size:13
Alignment explanation
Indices: 743555--743579 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
743545 CAACACTTTA
743555 TGTATCGATACAT
1 TGTATCGATACAT
743568 TGTATCGATACA
1 TGTATCGATACA
743580 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:748367 original size:15 final size:15
Alignment explanation
Indices: 748347--748381 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
748337 ATTCAATGCG
*
748347 ATGACTTACATTTTA
1 ATGACTTACATTTCA
748362 ATGACTTACATTTCA
1 ATGACTTACATTTCA
748377 ATGAC
1 ATGAC
748382 ATCGAATCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.34, C:0.17, G:0.09, T:0.40
Consensus pattern (15 bp):
ATGACTTACATTTCA
Found at i:749219 original size:13 final size:12
Alignment explanation
Indices: 749201--749233 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
749191 GAATTTATGG
749201 GAACAAATAAATA
1 GAACAAATAAA-A
749214 GAACAAATAAAA
1 GAACAAATAAAA
749226 -AACAAATA
1 GAACAAATA
749234 GCGGTATGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 8 0.40
12 1 0.05
13 11 0.55
ACGTcount: A:0.73, C:0.09, G:0.06, T:0.12
Consensus pattern (12 bp):
GAACAAATAAAA
Found at i:750651 original size:1 final size:1
Alignment explanation
Indices: 750641--750681 Score: 55
Period size: 1 Copynumber: 41.0 Consensus size: 1
750631 TTTTCGGCTC
* * *
750641 AAAAAGAAAAAAAAAAAAAACAAAAAAAAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
750682 GTAGAACCAA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.93, C:0.02, G:0.05, T:0.00
Consensus pattern (1 bp):
A
Found at i:750665 original size:13 final size:13
Alignment explanation
Indices: 750641--750681 Score: 64
Period size: 13 Copynumber: 3.1 Consensus size: 13
750631 TTTTCGGCTC
750641 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
*
750654 AAAAAAACAAAAAA
1 AAAAAGA-AAAAAA
750668 AAAAAGAAAAAAA
1 AAAAAGAAAAAAA
750681 A
1 A
750682 GTAGAACCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 13 0.52
14 12 0.48
ACGTcount: A:0.93, C:0.02, G:0.05, T:0.00
Consensus pattern (13 bp):
AAAAAGAAAAAAA
Found at i:750666 original size:21 final size:21
Alignment explanation
Indices: 750640--750681 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
750630 CTTTTCGGCT
750640 CAAAAAGAAAAAA-AAAAAAAA
1 CAAAAA-AAAAAAGAAAAAAAA
750661 CAAAAAAAAAAAGAAAAAAAA
1 CAAAAAAAAAAAGAAAAAAAA
750682 GTAGAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.90, C:0.05, G:0.05, T:0.00
Consensus pattern (21 bp):
CAAAAAAAAAAAGAAAAAAAA
Found at i:751752 original size:72 final size:72
Alignment explanation
Indices: 751708--751846 Score: 176
Period size: 72 Copynumber: 1.9 Consensus size: 72
751698 AAGCTGGTAG
*
751708 CACCCCTTTTATCCTTTTTAGTCATCAAAGAGTAGGATGCTTTTTTATTTTCAAAAGCCCTACAA
1 CACCCCTTTTATCC-TTTTAGTCATCAAAGAATAGGATGCTTTTTTATTTTCAAAAGCCCTACAA
*
751773 GTTGATGC
65 GCTGATGC
* * * * *
751781 CACCCTTTTTATCCTTTTAGTCCTTAAAGAATAGGATAC--TTTTATTTT-AAAAGCCCGCACAA
1 CACCCCTTTTATCCTTTTAGTCATCAAAGAATAGGATGCTTTTTTATTTTCAAAAGCCC-TACAA
751843 GCTG
65 GCTG
751847 GTGGTACTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
69 8 0.14
70 16 0.28
72 21 0.36
73 13 0.22
ACGTcount: A:0.27, C:0.22, G:0.13, T:0.37
Consensus pattern (72 bp):
CACCCCTTTTATCCTTTTAGTCATCAAAGAATAGGATGCTTTTTTATTTTCAAAAGCCCTACAAG
CTGATGC
Found at i:752120 original size:62 final size:60
Alignment explanation
Indices: 751931--752183 Score: 215
Period size: 62 Copynumber: 4.1 Consensus size: 60
751921 CTTTTATCAT
* * * ** *
751931 TTTTAGCCCTTAAAGAGTAGGATGCCTTTGTCCTCTTAAAAGCCTACGCAAACTGGTGGCACCCC
1 TTTTAGTCCTCAAAGAGTAGGATG-CTTT-TTCT-TTTTAAGCCTACACAAACTGGTGGCA--CC
* * * * *
751996 TTTTTTAGTTCTCAAAGAGTAGGATGC--TTT-TTTTTAAGCTTACACATATTGGTGGCAAC
1 --TTTTAGTCCTCAAAGAGTAGGATGCTTTTTCTTTTTAAGCCTACACAAACTGGTGGCACC
* *
752055 TTTTAGTCCTCAAAGAGCAGGATGCTTTTTTCTTTTTGAAGCCCACACAAACTGGTGGCACC
1 TTTTAGTCCTCAAAGAGTAGGATGC-TTTTTCTTTTT-AAGCCTACACAAACTGGTGGCACC
* ** * **
752117 TTTTAGTCCTTAAAGAGTAATATGCCTTTTTCTTTTTAATGCCTACATAAGTTGGTGGCACC
1 TTTTAGTCCTCAAAGAGTAGGATG-CTTTTTCTTTTTAA-GCCTACACAAACTGGTGGCACC
752179 TTTTA
1 TTTTA
752184 TCTTTTTAGT
Statistics
Matches: 153, Mismatches: 26, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
57 23 0.15
59 1 0.01
60 3 0.02
61 27 0.18
62 74 0.48
63 2 0.01
64 1 0.01
66 1 0.01
67 21 0.14
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.37
Consensus pattern (60 bp):
TTTTAGTCCTCAAAGAGTAGGATGCTTTTTCTTTTTAAGCCTACACAAACTGGTGGCACC
Found at i:752202 original size:70 final size:70
Alignment explanation
Indices: 752117--752524 Score: 291
Period size: 70 Copynumber: 5.7 Consensus size: 70
752107 TGGTGGCACC
* * * * * * *
752117 TTTTAGTCCTTAAAGAGTAATATGCCTTTTTCTTTTTAATGCCTACATAAGTTGGTGGCACCTTT
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
752182 TATCT
66 TATCT
* * * ** *
752187 TTTTAGTCCTCAAAGAGCAGGACGCCTTTCTTTTTCTTTTAAAGCCCACACAAGGTAATGACACC
1 TTTTAGTCCTCAAAGAGCAAGACGCC-TT-TTTCT-TTTTAAAGCCCACACAAGTTGGTGGCACC
*
752252 TTTCATCT
63 TTTTATCT
* * * * * * * * * * * *
752260 TTTCAGTCCTAAAAAAACAAGATGCTTTTTTCTTTTCAATGCCTATATAAGTTGGTGGCACATTT
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
752325 T-TCT
66 TATCT
* * *
752329 TTCTTAGTCCTTAAAGAGCAGGACGCCTTTTTCTTTTTAAAGCCCACACAAGCTGGTGGCACCTT
1 TT-TTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTT
*
752394 TTACCCAT
65 TTA-TC-T
* * * * * * * *
752402 TCTTAGTCCTCAAAAAGCAAAACAACTTTCCTTTTCTTTTTAAAGTCCACACAAGCTGGTGGTAC
1 TTTTAGTCCTCAAAGAGCAAGAC-GC---CTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCAC
752467 CTTTTTTATCAT
62 C--TTTTATC-T
* * * *
752479 TTTT-GTCCTCAAAGAGCAGGAC-TCATTTTCTTTCTCAAAGCCCACA
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTT-TTAAAGCCCACA
752525 TAGCTAAATG
Statistics
Matches: 258, Mismatches: 66, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
69 5 0.02
70 93 0.36
71 15 0.06
72 34 0.13
73 51 0.20
76 49 0.19
77 6 0.02
78 5 0.02
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (70 bp):
TTTTAGTCCTCAAAGAGCAAGACGCCTTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
TATCT
Found at i:752977 original size:20 final size:20
Alignment explanation
Indices: 752937--752993 Score: 87
Period size: 20 Copynumber: 2.8 Consensus size: 20
752927 TTTTTCAATT
* *
752937 TGTATCGATACAATAAGTGAA
1 TGTATTGATAC-ATGAGTGAA
752958 TGTATTGATACATGAGTGAA
1 TGTATTGATACATGAGTGAA
752978 TGTATTGATACATGAG
1 TGTATTGATACATGAG
752994 ATACATGTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
20 24 0.71
21 10 0.29
ACGTcount: A:0.37, C:0.07, G:0.23, T:0.33
Consensus pattern (20 bp):
TGTATTGATACATGAGTGAA
Found at i:753111 original size:51 final size:50
Alignment explanation
Indices: 753056--753193 Score: 170
Period size: 51 Copynumber: 2.7 Consensus size: 50
753046 TCTGGAAGGA
* * *
753056 AAATGTATCAATACATTTCAATTGTATTGATACATTCTGGATTTTTAACCC
1 AAATGTATCGATACATTTCAATTGTATCGATACATTCTGG-GTTTTAACCC
** *
753107 AAATGTATCGATACATTATTGATTGTATCGATACATTTTGGGTTTTAACCC
1 AAATGTATCGATACATT-TCAATTGTATCGATACATTCTGGGTTTTAACCC
*
753158 AAATATATCGATACATTCTTCAA-TGTATCGATACAT
1 AAATGTATCGATACA-T-TTCAATTGTATCGATACAT
753194 GCAGACCATT
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
51 52 0.69
52 22 0.29
53 1 0.01
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (50 bp):
AAATGTATCGATACATTTCAATTGTATCGATACATTCTGGGTTTTAACCC
Found at i:755640 original size:81 final size:80
Alignment explanation
Indices: 755491--755896 Score: 373
Period size: 81 Copynumber: 5.1 Consensus size: 80
755481 AAATTTTTAA
* * * *
755491 ATTTTT-CTTACAAAAGCATCGAATTTTTCACCATCGGGGGTACTCCAACCCCATCATTTTTGAG
1 ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAA-CCCATCATTTTTGAA
755555 GGGATACTCCAACCCC
65 GGGATACTCCAACCCC
* * * *
755571 ATTTTTACTTCCAAAAGCATTGAATTTTTTACTATTGAGGATACTCCAACCTCATCATTTTTGAA
1 ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAACC-CATCATTTTTGAA
*
755636 GGGATACTCCAACCTC
65 GGGATACTCCAACCCC
* * * * ** * *
755652 --TTTTACTTCCAAAA-TATTAAATTTTTCACCATCGGGGATATTTCAACCTTGTTATTTTTGAG
1 ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAACC-CATCATTTTTGAA
*
755714 GGGATACTCCAACCTC
65 GGGATACTCCAACCCC
* * * * ** *
755730 GTTTTTACTTCTAAAAGCATCGAATTTTTCACCATC-GAGATACTTTAACCCTATCA-TTTTCAA
1 ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAACCC-ATCATTTTTGAA
755793 GGAGATACTCCAACCCC
65 GG-GATACTCCAACCCC
* * * * * * *
755810 GTTTTTACTTCCAAAA-TATTAAAATTTTCATC-TTGGGGATACTCCAAGCCCA-CTATCTTTG-
1 ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAA-CCCATC-ATTTTTGA
*
755871 AGGGAATACTCCAACCCA
64 AGGG-ATACTCCAACCCC
755889 ATTTTTAC
1 ATTTTTAC
755897 CAAAAATCAA
Statistics
Matches: 266, Mismatches: 48, Indels: 25
0.78 0.14 0.07
Matches are distributed among these distances:
78 55 0.21
79 65 0.24
80 68 0.26
81 78 0.29
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (80 bp):
ATTTTTACTTCCAAAAGCATTGAATTTTTCACCATCGGGGATACTCCAACCCATCATTTTTGAAG
GGATACTCCAACCCC
Found at i:755836 original size:80 final size:81
Alignment explanation
Indices: 755492--755896 Score: 330
Period size: 80 Copynumber: 5.1 Consensus size: 81
755482 AATTTTTAAA
* ** * * * *
755492 TTTTT-CTTACAAAAGCATCGAATTTTTCACCATCGGGGGTACTCCAACCCCATCATTTTTGAGG
1 TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGAGATACTCCAACCCTATCATTTTTAAGG
*
755556 GGATACTCCAACCCCA
66 GGATACTCCAACCCCG
* * * *
755572 TTTTTACTTCCAAAAGCATTGAATTTTTTACTAT-TGAGGATACTCCAA-CCTCATCATTTTTGA
1 TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGA-GATACTCCAACCCT-ATCATTTTT-A
*
755635 A-GGGATACTCCAACCTC-
63 AGGGGATACTCCAACCCCG
* * * * * * * *
755652 -TTTTACTTCCAAAA-TATTAAATTTTTCACCATCGGGGATATTTCAACCTTGTTATTTTTGAGG
1 TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGAGATACTCCAACCCTATCATTTTTAAGG
*
755715 GGATACTCCAACCTCG
66 GGATACTCCAACCCCG
* ** ** *
755731 TTTTTACTTCTAAAAGCATCGAATTTTTCACCATC-GAGATACTTTAACCCTATCATTTTCAAGG
1 TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGAGATACTCCAACCCTATCATTTTTAAGG
*
755795 AGATACTCCAACCCCG
66 GGATACTCCAACCCCG
* * * * * * *
755811 TTTTTACTTCCAAAA-TATTAAAATTTTCATC-TTGGGGATACTCCAAGCCC-A-CTATCTTTGA
1 TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGAGATACTCCAA-CCCTATC-ATTTTTAA
* **
755872 GGGAATACTCCAACCCAA
64 GGGGATACTCCAACCCCG
755890 TTTTTAC
1 TTTTTAC
755897 CAAAAATCAA
Statistics
Matches: 259, Mismatches: 53, Indels: 27
0.76 0.16 0.08
Matches are distributed among these distances:
77 1 0.00
78 47 0.18
79 64 0.25
80 73 0.28
81 73 0.28
82 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.35
Consensus pattern (81 bp):
TTTTTACTTCCAAAAGCATTAAATTTTTCACCATCGGAGATACTCCAACCCTATCATTTTTAAGG
GGATACTCCAACCCCG
Found at i:755848 original size:159 final size:159
Alignment explanation
Indices: 755546--755896 Score: 424
Period size: 159 Copynumber: 2.2 Consensus size: 159
755536 CAACCCCATC
* * * *
755546 ATTTTTGAGGGGATACTCCAACCCCATTTTTACTTCCAAAAGCATTGAATTTTTTACTATTGAGG
1 ATTTTTGAGGGGATACTCCAACCCCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGAGG
* * *
755611 ATACTCCAACCTCATCATTTTTGAAGGGATACTCCAACCTCTTTTACTTCCAAAATATTAAATTT
66 ATACTCCAACCTCATCATTTTTCAAGGGATACTCCAACCCCTTTTACTTCCAAAATATTAAAATT
755676 TTCACCATCGGGGATATTTCAACCTTGTT
131 TTCACCATCGGGGATATTTCAACCTTGTT
* * *
755705 ATTTTTGAGGGGATACTCCAACCTCGTTTTTACTTCTAAAAGCATCGAATTTTTCACCATCGA-G
1 ATTTTTGAGGGGATACTCCAACCCCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGAGG
**
755769 ATACTTTAACC-CTATCA-TTTTCAAGGAGATACTCCAACCCCGTTTTTACTTCCAAAATATTAA
66 ATACTCCAACCTC-ATCATTTTTCAAGG-GATACTCCAACCCC--TTTTACTTCCAAAATATTAA
* * * * ***
755832 AATTTTCATC-TTGGGGATACTCCAAGCC-CACT
127 AATTTTCACCATCGGGGATATTTCAA-CCTTGTT
* * *
755864 ATCTTTGAGGGAATACTCCAACCCAATTTTTAC
1 ATTTTTGAGGGGATACTCCAACCCCATTTTTAC
755897 CAAAAATCAA
Statistics
Matches: 163, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
157 9 0.06
158 27 0.17
159 97 0.60
160 30 0.18
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.36
Consensus pattern (159 bp):
ATTTTTGAGGGGATACTCCAACCCCATTTTTACTTCCAAAAGCATCGAATTTTTCACCATCGAGG
ATACTCCAACCTCATCATTTTTCAAGGGATACTCCAACCCCTTTTACTTCCAAAATATTAAAATT
TTCACCATCGGGGATATTTCAACCTTGTT
Found at i:759444 original size:36 final size:36
Alignment explanation
Indices: 759396--759468 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
759386 TTTGTATTCT
*
759396 ATATGCTATGCCACATGAATGAGGGTTATGACCCAA
1 ATATGCTATGCCACATGAATGAGGGATATGACCCAA
*
759432 ATATGCTTTGCCACATGAATGAGGGATATGACCCAA
1 ATATGCTATGCCACATGAATGAGGGATATGACCCAA
759468 A
1 A
759469 GTTTGATCCC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (36 bp):
ATATGCTATGCCACATGAATGAGGGATATGACCCAA
Found at i:765474 original size:58 final size:59
Alignment explanation
Indices: 765374--765484 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 59
765364 ATTAGAGGTC
* *
765374 TTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAGTAACATCCTCCACTTGAGGGTTT
1 TTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGAGGGTTT
* * * **
765433 TTCACATCATCCCT-TAAGAGTTCAAGGTGTTTTAATAACATCCTCCAATTGA
1 TTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGA
765485 AAGAACTTCA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
58 31 0.69
59 14 0.31
ACGTcount: A:0.31, C:0.23, G:0.12, T:0.34
Consensus pattern (59 bp):
TTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGAGGGTTT
Found at i:765495 original size:58 final size:59
Alignment explanation
Indices: 765373--765505 Score: 151
Period size: 58 Copynumber: 2.3 Consensus size: 59
765363 TATTAGAGGT
* * ** **
765373 CTTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAGTAACATCCTCCACTTGAGGGTT
1 CTTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGAAAGAA
* * * * **
765432 TTTCACATCATCCCT-TAAGAGTTCAAGGTGTTTTAATAACATCCTCCAATTGAAAGAA
1 CTTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGAAAGAA
765490 CTTCACATCATCCCTC
1 CTTCACATCATCCCTC
765506 GGGTGTTTTA
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
58 46 0.77
59 14 0.23
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (59 bp):
CTTCACATCATCCCTCCAAAAGTTAAAAATGTTTTAATAACATCCTCCAATTGAAAGAA
Found at i:766160 original size:7 final size:7
Alignment explanation
Indices: 766134--778514 Score: 12169
Period size: 7 Copynumber: 1793.9 Consensus size: 7
766124 ACTTGAGTTA
766134 AAACCCT
1 AAACCCT
*
766141 -AACCCG
1 AAACCCT
766147 AAA-CCT
1 AAACCCT
766153 AAACCCT
1 AAACCCT
766160 -AACCCT
1 AAACCCT
766166 AAA-CCT
1 AAACCCT
766172 AAACCCT
1 AAACCCT
*
766179 AAACCCG
1 AAACCCT
*
766186 AAGAACCT
1 AA-ACCCT
*
766194 AAACCCGA
1 AAACCC-T
766202 AAACCCT
1 AAACCCT
766209 AAACCCT
1 AAACCCT
*
766216 -AAGCCT
1 AAACCCT
766222 AAACCCT
1 AAACCCT
766229 -AA-CCT
1 AAACCCT
766234 AAA-CCT
1 AAACCCT
766240 AAACCCT
1 AAACCCT
766247 -AA-CCT
1 AAACCCT
766252 AAA-CCT
1 AAACCCT
766258 AAACCACCT
1 AAA-C-CCT
766267 AAAACCCT
1 -AAACCCT
*
766275 --ACCCC
1 AAACCCT
766280 AAACCCT
1 AAACCCT
766287 AAACCCT
1 AAACCCT
766294 --ACCCT
1 AAACCCT
766299 AAACCCT
1 AAACCCT
766306 AAACCCT
1 AAACCCT
766313 AAACCCT
1 AAACCCT
766320 AAAAAACCCT
1 ---AAACCCT
766330 AAACCCT
1 AAACCCT
*
766337 AAAACCT
1 AAACCCT
**
766344 AAACAAT
1 AAACCCT
766351 -AACCCT
1 AAACCCT
766357 AAA-CCT
1 AAACCCT
*
766363 AAACCCGA
1 AAACCC-T
766371 AAACCCT
1 AAACCCT
766378 AAACCCT
1 AAACCCT
766385 AAACCCT
1 AAACCCT
766392 AAACCGCT
1 AAACC-CT
*
766400 AAACCCG
1 AAACCCT
766407 AAACCCT
1 AAACCCT
766414 AAA-CCT
1 AAACCCT
766420 -AACCCT
1 AAACCCT
**
766426 AAAAACT
1 AAACCCT
766433 AAA-CCT
1 AAACCCT
766439 AAACCCT
1 AAACCCT
766446 AAACACCCT
1 -AA-ACCCT
766455 AAA-CCT
1 AAACCCT
*
766461 AAA-CAT
1 AAACCCT
766467 AAACCCT
1 AAACCCT
766474 AAACAACCCT
1 --A-AACCCT
766484 AAACCCT
1 AAACCCT
766491 -AACCACT
1 AAACC-CT
766498 AAACCC-
1 AAACCCT
*
766504 AAACACT
1 AAACCCT
766511 AAACCCT
1 AAACCCT
766518 AAACCCT
1 AAACCCT
*
766525 -AACACT
1 AAACCCT
766531 -AACCCT
1 AAACCCT
766537 -AACCCT
1 AAACCCT
766543 AAACCCT
1 AAACCCT
*
766550 AACCATACCT
1 AA--A-CCCT
766560 AAACCCT
1 AAACCCT
766567 AAA-CCT
1 AAACCCT
*
766573 AAAACCT
1 AAACCCT
766580 -AACCCT
1 AAACCCT
*
766586 AAACCCAA
1 AAACCC-T
766594 AAACCCT
1 AAACCCT
*
766601 AAAACCT
1 AAACCCT
766608 AAAACCCT
1 -AAACCCT
*
766616 AACCCCT
1 AAACCCT
766623 -AACCCT
1 AAACCCT
*
766629 AAAAAACCT
1 --AAACCCT
766638 AAA-CCT
1 AAACCCT
*
766644 AAA-CAT
1 AAACCCT
**
766650 AAACCAG
1 AAACCCT
766657 AAACCCT
1 AAACCCT
766664 -AACCC-
1 AAACCCT
* *
766669 GAACCCG
1 AAACCCT
766676 AAACCCT
1 AAACCCT
766683 -AACCCT
1 AAACCCT
*
766689 AAACCCGA
1 AAACCC-T
766697 AAACCCT
1 AAACCCT
766704 AAA-CCT
1 AAACCCT
766710 AAACCCT
1 AAACCCT
766717 AAACCCT
1 AAACCCT
*
766724 AAAACACT
1 -AAACCCT
766732 AAA-CCT
1 AAACCCT
*
766738 AAAACCCG
1 -AAACCCT
*
766746 AAA---A
1 AAACCCT
766750 AAACCCT
1 AAACCCT
766757 AAAACCCT
1 -AAACCCT
*
766765 AAACACT
1 AAACCCT
766772 AAA-CCT
1 AAACCCT
766778 -AACCCT
1 AAACCCT
*
766784 AAAACCT
1 AAACCCT
766791 AAAACCCT
1 -AAACCCT
766799 AAACCCT
1 AAACCCT
766806 AAACCCT
1 AAACCCT
766813 AAACCCT
1 AAACCCT
766820 -AACCCT
1 AAACCCT
766826 -AACCCT
1 AAACCCT
766832 AAACCCT
1 AAACCCT
766839 -AACCCT
1 AAACCCT
*
766845 AAAACCCG
1 -AAACCCT
766853 AAACCCT
1 AAACCCT
*
766860 AAACCAT
1 AAACCCT
766867 AAACCCT
1 AAACCCT
*
766874 AAACACT
1 AAACCCT
766881 AAACCCT
1 AAACCCT
766888 AAACCCT
1 AAACCCT
766895 AAA-CCT
1 AAACCCT
766901 AAACCCCT
1 AAA-CCCT
766909 AAA-CCT
1 AAACCCT
766915 AAACCCT
1 AAACCCT
766922 AAA-CCT
1 AAACCCT
766928 AAACCCT
1 AAACCCT
*
766935 AAAACCT
1 AAACCCT
*
766942 AAAAACCCG
1 --AAACCCT
*
766951 AAAACCT
1 AAACCCT
766958 -AACCCT
1 AAACCCT
766964 AAAACCCT
1 -AAACCCT
766972 AAA-CCT
1 AAACCCT
766978 -AACCCT
1 AAACCCT
766984 AAACCCT
1 AAACCCT
*
766991 AAAACACT
1 -AAACCCT
766999 GAAACCCT
1 -AAACCCT
767007 AAAACCCT
1 -AAACCCT
767015 AAAACCCT
1 -AAACCCT
767023 AAA-CCT
1 AAACCCT
767029 AAACCCT
1 AAACCCT
767036 AAA-CCT
1 AAACCCT
767042 AAACCTCT
1 AAACC-CT
767050 AAGACCCT
1 AA-ACCCT
767058 AAACCC-
1 AAACCCT
*
767064 GAACCCT
1 AAACCCT
767071 AAACGCCT
1 AAAC-CCT
767079 AAACCCT
1 AAACCCT
767086 AAACAACCCT
1 --A-AACCCT
767096 AAACCC-
1 AAACCCT
*
767102 CAACCCT
1 AAACCCT
*
767109 AAAACCT
1 AAACCCT
*
767116 AAAAACCT
1 -AAACCCT
767124 AAACCCT
1 AAACCCT
767131 AAACCCT
1 AAACCCT
*
767138 AAAACCT
1 AAACCCT
767145 --ACCCT
1 AAACCCT
767150 -AACCCT
1 AAACCCT
767156 AAACCCCT
1 AAA-CCCT
767164 AAACCCT
1 AAACCCT
*
767171 AAAACCCG
1 -AAACCCT
767179 AAACCCT
1 AAACCCT
*
767186 AAACCCG
1 AAACCCT
767193 AAACCCT
1 AAACCCT
767200 AAACCCT
1 AAACCCT
767207 -AA-CCT
1 AAACCCT
*
767212 -AA-CCG
1 AAACCCT
767217 AAA-CCT
1 AAACCCT
767223 AAA-CCT
1 AAACCCT
*
767229 AAAACCT
1 AAACCCT
*
767236 AAAACCT
1 AAACCCT
767243 AAACCCT
1 AAACCCT
767250 AAACCCT
1 AAACCCT
767257 AAACCCT
1 AAACCCT
767264 AAACCCT
1 AAACCCT
767271 AAACCCT
1 AAACCCT
*
767278 AAACACT
1 AAACCCT
767285 -AACCCT
1 AAACCCT
767291 -AACCCT
1 AAACCCT
767297 AAA-CCT
1 AAACCCT
767303 -AA-CCT
1 AAACCCT
767308 AAACCCT
1 AAACCCT
**
767315 AAA--AG
1 AAACCCT
*
767320 AAACCAT
1 AAACCCT
767327 -AACCCT
1 AAACCCT
767333 AAACCCT
1 AAACCCT
767340 AAACCCGT
1 AAACCC-T
767348 AAACCCT
1 AAACCCT
*
767355 AAAAACCCCG
1 --AAA-CCCT
767365 AAACCC-
1 AAACCCT
767371 -AACCCT
1 AAACCCT
767377 -AACCCT
1 AAACCCT
767383 -AACCCT
1 AAACCCT
767389 -AA-CCT
1 AAACCCT
767394 -AACCCT
1 AAACCCT
767400 -AACCCT
1 AAACCCT
767406 AAACCCT
1 AAACCCT
767413 AAACCCT
1 AAACCCT
767420 AAACCCT
1 AAACCCT
767427 -AACCCT
1 AAACCCT
*
767433 AAAAAACCCG
1 ---AAACCCT
767443 AAACCCCT
1 AAA-CCCT
767451 AAACCCTAAT
1 AAACCC---T
767461 ACAACCCT
1 A-AACCCT
*
767469 AAACCCG
1 AAACCCT
*
767476 AAAGCCAT
1 AAA-CCCT
*
767484 AAACACT
1 AAACCCT
767491 AAACCCT
1 AAACCCT
*
767498 AAAACCT
1 AAACCCT
767505 AAACCCT
1 AAACCCT
767512 AAA-CCT
1 AAACCCT
*
767518 AAAACCT
1 AAACCCT
767525 ACTAACCCT
1 A--AACCCT
767534 -AACCCT
1 AAACCCT
767540 AAACCCT
1 AAACCCT
767547 -AACCCT
1 AAACCCT
767553 AAACCCT
1 AAACCCT
*
767560 AAACCCG
1 AAACCCT
767567 AAACCCT
1 AAACCCT
*
767574 AAA-CAT
1 AAACCCT
*
767580 AAAACGCT
1 -AAACCCT
767588 AAACCCT
1 AAACCCT
767595 AAACCACT
1 AAACC-CT
767603 AAACCCT
1 AAACCCT
767610 AAACCCT
1 AAACCCT
767617 AAACCCT
1 AAACCCT
767624 AAAAACCCT
1 --AAACCCT
767633 AAACCCT
1 AAACCCT
767640 -AACCCT
1 AAACCCT
*
767646 AAACCCGA
1 AAACCC-T
767654 AAACCCT
1 AAACCCT
767661 AAACCCT
1 AAACCCT
767668 AAACCCT
1 AAACCCT
767675 AAACCCT
1 AAACCCT
767682 AAACCCT
1 AAACCCT
767689 -AACCCT
1 AAACCCT
*
767695 AAAAACCT
1 -AAACCCT
767703 AAACCCT
1 AAACCCT
767710 AAACCCT
1 AAACCCT
767717 AAACCCT
1 AAACCCT
*
767724 CAA-CCT
1 AAACCCT
767730 AAACCCT
1 AAACCCT
767737 AAAAACCCT
1 --AAACCCT
*
767746 AAACACT
1 AAACCCT
767753 AAACCCT
1 AAACCCT
767760 AAAACCC-
1 -AAACCCT
*
767767 AAACACT
1 AAACCCT
767774 AAACCCT
1 AAACCCT
*
767781 AAACCCG
1 AAACCCT
767788 AAACCCT
1 AAACCCT
767795 AAACCCT
1 AAACCCT
767802 AAACCCT
1 AAACCCT
*
767809 AAACCCG
1 AAACCCT
767816 AAACCCT
1 AAACCCT
767823 AAACCCT
1 AAACCCT
*
767830 -ATCCCT
1 AAACCCT
767836 AAACCCT
1 AAACCCT
767843 -AACGCCT
1 AAAC-CCT
767850 AAAACCCT
1 -AAACCCT
767858 AAACCCT
1 AAACCCT
767865 AAACCCT
1 AAACCCT
*
767872 AAAGACACT
1 -AA-ACCCT
767881 AAAAAACCCT
1 ---AAACCCT
767891 AAACCCT
1 AAACCCT
*
767898 AAACCCG
1 AAACCCT
767905 AAACCCT
1 AAACCCT
767912 --ACCCT
1 AAACCCT
767917 AAACCCT
1 AAACCCT
767924 -AACCCT
1 AAACCCT
767930 AAACCCT
1 AAACCCT
767937 AAACCCT
1 AAACCCT
767944 AAACCCT
1 AAACCCT
767951 AAA-CCT
1 AAACCCT
767957 AAACCCT
1 AAACCCT
767964 AAACCCT
1 AAACCCT
767971 -AACCCT
1 AAACCCT
767977 -AACCCT
1 AAACCCT
767983 AAACCCT
1 AAACCCT
767990 AAACCCT
1 AAACCCT
767997 AAA-CCT
1 AAACCCT
768003 AAACCCT
1 AAACCCT
768010 -AACCCT
1 AAACCCT
*
768016 ATAAACCT
1 A-AACCCT
768024 AAACCCT
1 AAACCCT
768031 AAAACGCC-
1 -AAAC-CCT
* *
768039 GAACCAT
1 AAACCCT
768046 AAAACCCT
1 -AAACCCT
768054 AAACCC-
1 AAACCCT
* *
768060 GAACACT
1 AAACCCT
*
768067 AAACCAT
1 AAACCCT
768074 AAACCCAT
1 AAACCC-T
768082 AAACCCT
1 AAACCCT
768089 AAACCCT
1 AAACCCT
768096 AAACCC-
1 AAACCCT
*
768102 AAACCCG
1 AAACCCT
768109 AAACCCT
1 AAACCCT
768116 -AACCCT
1 AAACCCT
768122 AAA-CC-
1 AAACCCT
768127 AAACCC-
1 AAACCCT
* *
768133 GAACCCG
1 AAACCCT
768140 AAACCCT
1 AAACCCT
768147 -AACCC-
1 AAACCCT
*
768152 GAACCC-
1 AAACCCT
*
768158 GAACCCT
1 AAACCCT
768165 AAA-CCT
1 AAACCCT
768171 AAACCCT
1 AAACCCT
768178 AAACCCT
1 AAACCCT
768185 AAACCCT
1 AAACCCT
768192 AAACCCT
1 AAACCCT
768199 -AACCCT
1 AAACCCT
768205 AAAACCCT
1 -AAACCCT
768213 AAACCCT
1 AAACCCT
*
768220 AAAACCCGA
1 -AAACCC-T
*
768229 AAACACT
1 AAACCCT
768236 AAACCCT
1 AAACCCT
*
768243 AAA-CCG
1 AAACCCT
768249 AAACCCT
1 AAACCCT
*
768256 ACACCCT
1 AAACCCT
768263 AAA-CCT
1 AAACCCT
768269 AAACCC-
1 AAACCCT
768275 -AACCCT
1 AAACCCT
768281 -AACCC-
1 AAACCCT
768286 -AACCCT
1 AAACCCT
768292 AAAACCCT
1 -AAACCCT
768300 AAACCCT
1 AAACCCT
768307 AAACCCT
1 AAACCCT
768314 AAACCCT
1 AAACCCT
*
768321 AAACCCGA
1 AAACCC-T
768329 AAACCCT
1 AAACCCT
768336 AAACCCT
1 AAACCCT
768343 AAACCCT
1 AAACCCT
*
768350 AAACCCG
1 AAACCCT
768357 AAACCCT
1 AAACCCT
*
768364 AAACCAT
1 AAACCCT
768371 AAAAAACCC-
1 ---AAACCCT
768380 AAACCCT
1 AAACCCT
768387 -AACCCT
1 AAACCCT
*
768393 AAAACCCG
1 -AAACCCT
768401 AAACCCT
1 AAACCCT
*
768408 AAA-CCG
1 AAACCCT
768414 AAACCCT
1 AAACCCT
768421 AAACCCT
1 AAACCCT
768428 -AA-CCT
1 AAACCCT
768433 AAAACCCT
1 -AAACCCT
768441 -AACCCT
1 AAACCCT
768447 AAA-CCT
1 AAACCCT
768453 -AACCCT
1 AAACCCT
768459 AAACCCT
1 AAACCCT
768466 AAAACCCT
1 -AAACCCT
768474 AAA-CCT
1 AAACCCT
768480 AAAAACCCT
1 --AAACCCT
768489 AAACCCT
1 AAACCCT
**
768496 AAAAAC-
1 AAACCCT
*
768502 GAACCCT
1 AAACCCT
768509 AAAACCCT
1 -AAACCCT
768517 AAACCCT
1 AAACCCT
768524 AAACCCT
1 AAACCCT
768531 AAACCCT
1 AAACCCT
768538 AAACCCT
1 AAACCCT
*
768545 AACCCCTT
1 AAACCC-T
768553 AAACCCT
1 AAACCCT
*
768560 AAACACT
1 AAACCCT
768567 AAAACCCT
1 -AAACCCT
768575 AAACCCT
1 AAACCCT
768582 AAAAAACCCT
1 ---AAACCCT
768592 AAACCCT
1 AAACCCT
768599 AAACCCCT
1 AAA-CCCT
768607 AAACCCT
1 AAACCCT
768614 AAACCC-
1 AAACCCT
768620 AAACCCT
1 AAACCCT
768627 AAA-CC-
1 AAACCCT
768632 AGAACCCT
1 A-AACCCT
768640 AAACCCT
1 AAACCCT
768647 AAA-CCT
1 AAACCCT
768653 -AACCCT
1 AAACCCT
768659 AAACCCT
1 AAACCCT
*
768666 AAACCCGAA
1 AAACCC--T
768675 AAACCCT
1 AAACCCT
768682 -AACCCT
1 AAACCCT
*
768688 AAACACT
1 AAACCCT
768695 AAA-CCT
1 AAACCCT
768701 AAACCCT
1 AAACCCT
768708 AAACCCT
1 AAACCCT
*
768715 AACCCCT
1 AAACCCT
* *
768722 AACCCCG
1 AAACCCT
*
768729 AAACCCG
1 AAACCCT
*
768736 AAACCCG
1 AAACCCT
768743 AAACCCCT
1 AAA-CCCT
*
768751 AAAACCT
1 AAACCCT
768758 AAA-CC-
1 AAACCCT
* *
768763 GAACACT
1 AAACCCT
768770 -AACCCT
1 AAACCCT
*
768776 AAACCCG
1 AAACCCT
*
768783 AAACCCG
1 AAACCCT
768790 AAACCCT
1 AAACCCT
768797 AAACCCT
1 AAACCCT
768804 AAACCCT
1 AAACCCT
*
768811 AAA---A
1 AAACCCT
768815 AAACCCT
1 AAACCCT
*
768822 AAACCAT
1 AAACCCT
768829 -AACCCT
1 AAACCCT
768835 AAAACCCT
1 -AAACCCT
768843 AAA-CCT
1 AAACCCT
768849 AAACCCT
1 AAACCCT
768856 AAA-CCT
1 AAACCCT
768862 AGAA--C-
1 A-AACCCT
768867 AAACCCT
1 AAACCCT
768874 AAACCCT
1 AAACCCT
*
768881 AAACCCGA
1 AAACCC-T
768889 AAACCCCT
1 AAA-CCCT
768897 AAA-CCT
1 AAACCCT
768903 AAA-CCT
1 AAACCCT
768909 AAACACACT
1 AAAC-C-CT
768918 -AACCCT
1 AAACCCT
768924 AAACCCT
1 AAACCCT
*
768931 AAACCCG
1 AAACCCT
768938 AAA-CCT
1 AAACCCT
768944 AAACCCT
1 AAACCCT
* *
768951 AAACACG
1 AAACCCT
*
768958 GAACCCT
1 AAACCCT
768965 AAACCCT
1 AAACCCT
768972 -AACCCT
1 AAACCCT
768978 -AACCCT
1 AAACCCT
768984 AAA-CCT
1 AAACCCT
*
768990 -AA-CCG
1 AAACCCT
768995 AAA-CCT
1 AAACCCT
769001 AAACCCT
1 AAACCCT
769008 -AACCCT
1 AAACCCT
769014 -AACCCT
1 AAACCCT
769020 AAACCCT
1 AAACCCT
769027 AAACCCT
1 AAACCCT
*
769034 AAACACT
1 AAACCCT
769041 AAACCCT
1 AAACCCT
769048 AAA-CCT
1 AAACCCT
769054 AAAACCCT
1 -AAACCCT
* *
769062 AAAACCG
1 AAACCCT
769069 AAA-CCT
1 AAACCCT
769075 -AA-CCT
1 AAACCCT
769080 AAA-CCT
1 AAACCCT
769086 AAACACCT
1 AAAC-CCT
769094 AAAACCCT
1 -AAACCCT
*
769102 AAACCCG
1 AAACCCT
769109 AAACCCT
1 AAACCCT
*
769116 AAACCCG
1 AAACCCT
*
769123 AAA---A
1 AAACCCT
769127 AAACCCT
1 AAACCCT
*
769134 AAACACT
1 AAACCCT
769141 AAACCCT
1 AAACCCT
769148 AAAACCCT
1 -AAACCCT
769156 AAACCCT
1 AAACCCT
769163 AAACCCT
1 AAACCCT
769170 AAAAACCCCT
1 --AAA-CCCT
769180 -AACCCT
1 AAACCCT
769186 AAACCCT
1 AAACCCT
769193 AAACCCT
1 AAACCCT
769200 AAAACCC-
1 -AAACCCT
* * *
769207 GAACACG
1 AAACCCT
*
769214 AAACCCG
1 AAACCCT
769221 AAACCCT
1 AAACCCT
769228 AAACCCT
1 AAACCCT
769235 AAACCCT
1 AAACCCT
769242 AAACCCT
1 AAACCCT
769249 AAACCCT
1 AAACCCT
769256 AAACCCT
1 AAACCCT
769263 -AACCCT
1 AAACCCT
769269 AAACCCT
1 AAACCCT
769276 AAACCC-
1 AAACCCT
*
769282 AAACCCG
1 AAACCCT
*
769289 AAA-CCA
1 AAACCCT
769295 AACACCCT
1 AA-ACCCT
*
769303 AAGCCCT
1 AAACCCT
769310 AAACCCT
1 AAACCCT
769317 -AA-CCT
1 AAACCCT
769322 AAACCCT
1 AAACCCT
769329 AAA-CCT
1 AAACCCT
769335 AAACCC-
1 AAACCCT
* *
769341 GAA-CCG
1 AAACCCT
769347 AAA-CCT
1 AAACCCT
*
769353 AAAACCCG
1 -AAACCCT
769361 AAACCCT
1 AAACCCT
769368 --ACCCT
1 AAACCCT
*
769373 AAACACT
1 AAACCCT
769380 AAAACCCT
1 -AAACCCT
*
769388 -AACGACT
1 AAAC-CCT
769395 AAACCCT
1 AAACCCT
769402 AAGAACCCT
1 -A-AACCCT
769411 AAACCCT
1 AAACCCT
769418 -AACCCT
1 AAACCCT
*
769424 AAACACT
1 AAACCCT
769431 AACCAACCCT
1 -A--AACCCT
769441 AAA-CCT
1 AAACCCT
769447 AAACCCT
1 AAACCCT
769454 AAACCCT
1 AAACCCT
769461 -AA-CCT
1 AAACCCT
769466 AAAAACCCT
1 --AAACCCT
*
769475 -AACACT
1 AAACCCT
769481 AAAACCCT
1 -AAACCCT
769489 AAACCCT
1 AAACCCT
769496 -AACCCT
1 AAACCCT
769502 AAACCCT
1 AAACCCT
769509 -AA-CCT
1 AAACCCT
769514 AAACCCT
1 AAACCCT
769521 AAACCC-
1 AAACCCT
769527 AAACCCT
1 AAACCCT
769534 AAACCCT
1 AAACCCT
769541 AAACCCT
1 AAACCCT
769548 AAACCCT
1 AAACCCT
769555 AAACCCT
1 AAACCCT
769562 AAAACCCT
1 -AAACCCT
769570 AAACCCT
1 AAACCCT
769577 AAACCC-
1 AAACCCT
*
769583 AAACCCG
1 AAACCCT
769590 AAACCCAT
1 AAACCC-T
769598 AAACCCT
1 AAACCCT
769605 -AACCCT
1 AAACCCT
769611 -AACCCT
1 AAACCCT
769617 AAACCCT
1 AAACCCT
769624 -AACCCT
1 AAACCCT
769630 -AACCCT
1 AAACCCT
769636 AAAACCCT
1 -AAACCCT
769644 AAACCC-
1 AAACCCT
* *
769650 GAACCAACG
1 AAACC--CT
*
769659 AAACCGCCGAA
1 AAA-C-CC--T
*
769670 AAAACC-
1 AAACCCT
*
769676 GAACCCT
1 AAACCCT
769683 AAACCC-
1 AAACCCT
*
769689 GAACCCT
1 AAACCCT
769696 -AA-CCT
1 AAACCCT
769701 AAACCCT
1 AAACCCT
769708 AAA-CCT
1 AAACCCT
769714 -AACCCT
1 AAACCCT
769720 AAACCCT
1 AAACCCT
769727 --ACCCT
1 AAACCCT
*
769732 AAA-ACT
1 AAACCCT
769738 AAA-CCT
1 AAACCCT
769744 AAACCCT
1 AAACCCT
769751 AAA-CCT
1 AAACCCT
*
769757 AAACCCG
1 AAACCCT
769764 AAACCCT
1 AAACCCT
769771 -AACCC-
1 AAACCCT
769776 AAACCC-
1 AAACCCT
769782 -AA-CCT
1 AAACCCT
769787 AAACCCT
1 AAACCCT
769794 AAACCCT
1 AAACCCT
769801 AAACCCCT
1 AAA-CCCT
**
769809 AAACAAT
1 AAACCCT
769816 AAACCCT
1 AAACCCT
*
769823 AAACCAT
1 AAACCCT
*
769830 AAA---A
1 AAACCCT
769834 AAACCCT
1 AAACCCT
769841 AAA-CCT
1 AAACCCT
769847 AAACCCT
1 AAACCCT
* *
769854 GAACCCC
1 AAACCCT
*
769861 AAACCCG
1 AAACCCT
769868 AAACCCT
1 AAACCCT
* *
769875 AAACACG
1 AAACCCT
769882 AAACCCT
1 AAACCCT
769889 AAACCCT
1 AAACCCT
769896 AAA-CCT
1 AAACCCT
*
769902 -AACCCGA
1 AAACCC-T
769909 AAACCCT
1 AAACCCT
769916 AAACCCCT
1 AAA-CCCT
769924 AAACCCT
1 AAACCCT
769931 AAACCCT
1 AAACCCT
769938 AAACCCTT
1 AAACCC-T
769946 AAACCCT
1 AAACCCT
769953 -AA-CCT
1 AAACCCT
769958 AAACCCT
1 AAACCCT
*
769965 AAACCCG
1 AAACCCT
769972 AAACCC-
1 AAACCCT
**
769978 CGACGCCT
1 AAAC-CCT
*
769986 AACCCCT
1 AAACCCT
769993 AAACCCT
1 AAACCCT
770000 AAACCCT
1 AAACCCT
*
770007 AAA-CCG
1 AAACCCT
770013 AAACCCT
1 AAACCCT
*
770020 AAACCCG
1 AAACCCT
770027 AAACCCT
1 AAACCCT
770034 ATAA-CCT
1 A-AACCCT
770041 AAACCCT
1 AAACCCT
*
770048 AAACCAT
1 AAACCCT
770055 AAACCCT
1 AAACCCT
770062 AAACCCT
1 AAACCCT
770069 AAACCCT
1 AAACCCT
770076 AAACCCT
1 AAACCCT
770083 AAACCCT
1 AAACCCT
770090 AAACCCT
1 AAACCCT
770097 AAACCCT
1 AAACCCT
*
770104 -AACCCGG
1 AAACCC-T
770111 AAACCCT
1 AAACCCT
770118 AAACCCT
1 AAACCCT
770125 AAACCCT
1 AAACCCT
*
770132 -AACCAT
1 AAACCCT
*
770138 AAACCAT
1 AAACCCT
*
770145 AAACCCG
1 AAACCCT
770152 AAA-CCT
1 AAACCCT
770158 AAA-CCT
1 AAACCCT
770164 AAACCCT
1 AAACCCT
770171 AAA-CCT
1 AAACCCT
770177 AAAACCCT
1 -AAACCCT
770185 AAAACCCT
1 -AAACCCT
*
770193 ACACCCT
1 AAACCCT
770200 AAACCCCT
1 AAA-CCCT
770208 AAACCCT
1 AAACCCT
*
770215 AAACACT
1 AAACCCT
770222 AAACCCT
1 AAACCCT
770229 AAAACCCT
1 -AAACCCT
770237 AAACCCT
1 AAACCCT
*
770244 AAA-CCG
1 AAACCCT
770250 AAACCCT
1 AAACCCT
*
770257 AAACCCG
1 AAACCCT
770264 AAAGCCCT
1 AAA-CCCT
**
770272 AAACCAA
1 AAACCCT
770279 AACACCCT
1 AA-ACCCT
770287 AAACCCT
1 AAACCCT
770294 AAACCCT
1 AAACCCT
770301 AAACCCT
1 AAACCCT
*
770308 AAACCCGAA
1 AAACCC--T
770317 AAACCCT
1 AAACCCT
770324 AAACCCT
1 AAACCCT
770331 AAACCCT
1 AAACCCT
*
770338 AAACACT
1 AAACCCT
770345 AAAACCCT
1 -AAACCCT
770353 AAACCCT
1 AAACCCT
770360 AAACCCT
1 AAACCCT
770367 AAACCCT
1 AAACCCT
770374 AAACCCT
1 AAACCCT
770381 AAACCCT
1 AAACCCT
770388 AAACCCT
1 AAACCCT
*
770395 AAACCCC
1 AAACCCT
770402 AAACCCT
1 AAACCCT
770409 AAACCCT
1 AAACCCT
770416 AAAAACCCCT
1 --AAA-CCCT
770426 AAACCCCT
1 AAA-CCCT
*
770434 AAACCCGA
1 AAACCC-T
770442 AAACCCT
1 AAACCCT
770449 AAACCCT
1 AAACCCT
770456 AAACCCT
1 AAACCCT
*
770463 AAAGCACT
1 AAA-CCCT
770471 AAACCCT
1 AAACCCT
770478 AAACCCT
1 AAACCCT
770485 AAA-CC-
1 AAACCCT
*
770490 -GACCCT
1 AAACCCT
770496 AAACCCT
1 AAACCCT
770503 -AACCCT
1 AAACCCT
*
770509 AAAAACCT
1 -AAACCCT
*
770517 AAAACCT
1 AAACCCT
770524 AAACCC-
1 AAACCCT
770530 AAACCCT
1 AAACCCT
770537 AAACCCT
1 AAACCCT
770544 AAACCCT
1 AAACCCT
770551 -AACCCT
1 AAACCCT
770557 AAACCCT
1 AAACCCT
770564 AAACCCT
1 AAACCCT
*
770571 AAACCCG
1 AAACCCT
770578 AAACCCT
1 AAACCCT
*
770585 AAACCAT
1 AAACCCT
770592 -AACCCT
1 AAACCCT
770598 AAACCCT
1 AAACCCT
*
770605 AAACCCG
1 AAACCCT
770612 AAACCCT
1 AAACCCT
770619 AAAACCCT
1 -AAACCCT
770627 -AACCCT
1 AAACCCT
770633 AAACCCT
1 AAACCCT
770640 AAACACCCT
1 -AA-ACCCT
770649 AAACCCT
1 AAACCCT
*
770656 AAACCCG
1 AAACCCT
770663 AAA-CCT
1 AAACCCT
770669 AAACCCT
1 AAACCCT
*
770676 AAACCCG
1 AAACCCT
770683 AAACCC-
1 AAACCCT
770689 AAACCCT
1 AAACCCT
*
770696 AAACCCG
1 AAACCCT
770703 AAACCCT
1 AAACCCT
*
770710 AAACCCG
1 AAACCCT
770717 AAA-CCT
1 AAACCCT
770723 AAACCCACCT
1 AAA--C-CCT
770733 AAACCCT
1 AAACCCT
*
770740 AAAAACCCG
1 --AAACCCT
*
770749 AAACACT
1 AAACCCT
770756 AAACCCT
1 AAACCCT
770763 AAACCCT
1 AAACCCT
*
770770 -AACCCG
1 AAACCCT
770776 AAACCCT
1 AAACCCT
770783 AAACCCT
1 AAACCCT
770790 AAACCCCT
1 AAA-CCCT
770798 AAACCCT
1 AAACCCT
*
770805 AACCCCT
1 AAACCCT
770812 AAACCCT
1 AAACCCT
770819 AAACCC-
1 AAACCCT
*
770825 AAA-CCG
1 AAACCCT
770831 AAACCCT
1 AAACCCT
770838 AAA-CCT
1 AAACCCT
770844 AAACCCT
1 AAACCCT
770851 AAACCCT
1 AAACCCT
770858 AAACCCT
1 AAACCCT
770865 AAA--CT
1 AAACCCT
*
770870 AAACCCG
1 AAACCCT
770877 AAACCCT
1 AAACCCT
770884 -AACCCT
1 AAACCCT
770890 AAA-CCT
1 AAACCCT
770896 AAACCCT
1 AAACCCT
770903 -AACCCT
1 AAACCCT
770909 AAACCC-
1 AAACCCT
770915 AAACCCT
1 AAACCCT
770922 -AACCCT
1 AAACCCT
770928 AAA-CCT
1 AAACCCT
770934 AAACAACCT
1 AAAC--CCT
770943 AAA-CCT
1 AAACCCT
*
770949 AAACCCG
1 AAACCCT
770956 AAACCCT
1 AAACCCT
*
770963 -AACCCG
1 AAACCCT
770969 AAACCCT
1 AAACCCT
770976 --ACCCT
1 AAACCCT
770981 -AA-CC-
1 AAACCCT
770985 AAACCCT
1 AAACCCT
770992 --ACCCT
1 AAACCCT
770997 AAACCCT
1 AAACCCT
771004 AAACCCT
1 AAACCCT
771011 AAACCCT
1 AAACCCT
771018 AAACCCT
1 AAACCCT
771025 AAACCCT
1 AAACCCT
771032 AAACCCT
1 AAACCCT
*
771039 AAACCCGA
1 AAACCC-T
771047 AAACCCT
1 AAACCCT
*
771054 AAACCCG
1 AAACCCT
771061 AAACCCT
1 AAACCCT
771068 AAACCCT
1 AAACCCT
771075 AAAACCCT
1 -AAACCCT
*
771083 AAAAAACCT
1 --AAACCCT
771092 AAACCCT
1 AAACCCT
771099 AAA-CCT
1 AAACCCT
*
771105 AAACGCCG
1 AAAC-CCT
*
771113 AAACACT
1 AAACCCT
*
771120 AAACCCG
1 AAACCCT
771127 AAACCCT
1 AAACCCT
771134 AAACCCT
1 AAACCCT
771141 AAA-CC-
1 AAACCCT
*
771146 GAACCCT
1 AAACCCT
*
771153 AAACCCCGA
1 AAA-CCC-T
771162 AAACCCT
1 AAACCCT
771169 AAA-CCT
1 AAACCCT
771175 AAACCCT
1 AAACCCT
771182 AAACCCT
1 AAACCCT
771189 AAACCCT
1 AAACCCT
771196 AAACCCT
1 AAACCCT
771203 AAACCCT
1 AAACCCT
771210 AAACCCT
1 AAACCCT
771217 AAACCCT
1 AAACCCT
771224 AAACCCT
1 AAACCCT
771231 AAACCCT
1 AAACCCT
771238 AAACCCT
1 AAACCCT
*
771245 AAAACCT
1 AAACCCT
771252 AAACCCT
1 AAACCCT
*
771259 AAACCCG
1 AAACCCT
771266 AAACCCCCCT
1 AAA---CCCT
771276 AAAACCCT
1 -AAACCCT
771284 AAACCCT
1 AAACCCT
771291 AAACCCT
1 AAACCCT
771298 AAACCCT
1 AAACCCT
771305 AAA-CCT
1 AAACCCT
771311 AAACCCT
1 AAACCCT
771318 AAA-CC-
1 AAACCCT
771323 AAACCCT
1 AAACCCT
771330 AAACCC-
1 AAACCCT
*
771336 GAA--CT
1 AAACCCT
*
771341 AAA---A
1 AAACCCT
771345 AAACCCT
1 AAACCCT
771352 AAACCCT
1 AAACCCT
**
771359 -AACACGA
1 AAAC-CCT
771366 AAACCCT
1 AAACCCT
771373 AAAACCCT
1 -AAACCCT
771381 AAACCCT
1 AAACCCT
771388 AAA-CCT
1 AAACCCT
771394 AAACCCT
1 AAACCCT
*
771401 -AACCCG
1 AAACCCT
771407 AAA-CC-
1 AAACCCT
*
771412 GAACCCT
1 AAACCCT
*
771419 AAACACT
1 AAACCCT
771426 AAAAACCCT
1 --AAACCCT
771435 AAACCCT
1 AAACCCT
771442 -AACCCT
1 AAACCCT
771448 AAAACCCT
1 -AAACCCT
771456 AAACCCT
1 AAACCCT
771463 -AACCCT
1 AAACCCT
771469 AAACCCT
1 AAACCCT
771476 AAACCCT
1 AAACCCT
771483 AAACCCT
1 AAACCCT
771490 AAACCCT
1 AAACCCT
771497 AAACCCT
1 AAACCCT
*
771504 AAACCCG
1 AAACCCT
771511 AAA-CCT
1 AAACCCT
771517 AAACCC-
1 AAACCCT
771523 AAACCCT
1 AAACCCT
771530 AAACCC-
1 AAACCCT
771536 AAACCCT
1 AAACCCT
771543 AAACCCT
1 AAACCCT
771550 AAACCCT
1 AAACCCT
771557 AAGACCCT
1 AA-ACCCT
771565 AAACCCT
1 AAACCCT
771572 AAA-CCT
1 AAACCCT
**
771578 -AACCAG
1 AAACCCT
771584 AAACCCT
1 AAACCCT
771591 AAACCCT
1 AAACCCT
771598 AAACCCT
1 AAACCCT
771605 AAACCCT
1 AAACCCT
*
771612 AAACCCG
1 AAACCCT
*
771619 AAACACT
1 AAACCCT
771626 AAACCCT
1 AAACCCT
771633 AAACCCT
1 AAACCCT
*
771640 AAAACC-
1 AAACCCT
771646 AAACCCT
1 AAACCCT
771653 -AACCCT
1 AAACCCT
771659 AAACCC-
1 AAACCCT
*
771665 AAA-CCG
1 AAACCCT
771671 AAACCCT
1 AAACCCT
771678 AAACCCT
1 AAACCCT
771685 AAA-CCT
1 AAACCCT
771691 AAACCCT
1 AAACCCT
*
771698 AAA-CCG
1 AAACCCT
*
771704 AAAACCT
1 AAACCCT
771711 AAACCCT
1 AAACCCT
771718 AAACCCT
1 AAACCCT
*
771725 AAACACT
1 AAACCCT
771732 AAACCCT
1 AAACCCT
771739 AAAACCCT
1 -AAACCCT
771747 AAACCCT
1 AAACCCT
*
771754 -AACACT
1 AAACCCT
771760 AAACCC-
1 AAACCCT
*
771766 AAA-CCG
1 AAACCCT
771772 AAA-CCT
1 AAACCCT
771778 -AA-CCT
1 AAACCCT
771783 AAACCC-
1 AAACCCT
*
771789 GAA--CT
1 AAACCCT
771794 AAACCCT
1 AAACCCT
771801 AAACCC-
1 AAACCCT
*
771807 GAACCCT
1 AAACCCT
771814 AAA-CCT
1 AAACCCT
*
771820 -AACCAT
1 AAACCCT
771826 AAACCCT
1 AAACCCT
771833 AAACCC-
1 AAACCCT
771839 AAACCCT
1 AAACCCT
771846 AAA-CCT
1 AAACCCT
*
771852 AAACCCG
1 AAACCCT
*
771859 AAACCAT
1 AAACCCT
771866 AAACCCT
1 AAACCCT
771873 -AACCCT
1 AAACCCT
771879 -AA--CT
1 AAACCCT
771883 AAACCCT
1 AAACCCT
771890 GAAACCCT
1 -AAACCCT
771898 AAACCCT
1 AAACCCT
771905 -AACCCT
1 AAACCCT
771911 AAGACCC-
1 AA-ACCCT
771918 AAACCCT
1 AAACCCT
771925 AAA-CCT
1 AAACCCT
771931 AAACCCT
1 AAACCCT
771938 AAAACCCT
1 -AAACCCT
771946 AAACCC-
1 AAACCCT
*
771952 -AACCCG
1 AAACCCT
*
771958 AAACCCG
1 AAACCCT
771965 AAACCCT
1 AAACCCT
771972 AAACCCT
1 AAACCCT
771979 AAACCCT
1 AAACCCT
771986 AAACCCT
1 AAACCCT
771993 -AACCCT
1 AAACCCT
771999 -AACCCT
1 AAACCCT
772005 AAACCCT
1 AAACCCT
772012 AAAACCCT
1 -AAACCCT
772020 -AACCCT
1 AAACCCT
772026 AAACCCT
1 AAACCCT
772033 AAA-CCT
1 AAACCCT
772039 AAACCCT
1 AAACCCT
772046 AAACCCT
1 AAACCCT
*
772053 AAACACT
1 AAACCCT
*
772060 AAA-TCT
1 AAACCCT
772066 AAACCCT
1 AAACCCT
*
772073 AAACACT
1 AAACCCT
772080 AAACCCT
1 AAACCCT
772087 AAACCCT
1 AAACCCT
772094 AAACCCT
1 AAACCCT
772101 AAACCC-
1 AAACCCT
772107 -AACCCT
1 AAACCCT
772113 -AACCCT
1 AAACCCT
772119 AAACCCT
1 AAACCCT
772126 AAACCCCT
1 AAA-CCCT
772134 AAACCC-
1 AAACCCT
*
772140 GAA-CCT
1 AAACCCT
772146 AAACCCT
1 AAACCCT
772153 -AACCCT
1 AAACCCT
772159 AAACCCT
1 AAACCCT
*
772166 -ACCCCT
1 AAACCCT
772172 AAACCCT
1 AAACCCT
772179 -AACCCT
1 AAACCCT
772185 -AACCCT
1 AAACCCT
772191 AAACCCT
1 AAACCCT
772198 AAACCCT
1 AAACCCT
*
772205 AAACCCG
1 AAACCCT
772212 AAACACACT
1 AAAC-C-CT
772221 -AA-CCT
1 AAACCCT
772226 AAA-CCT
1 AAACCCT
772232 AAAAACCCT
1 --AAACCCT
772241 -AACCCT
1 AAACCCT
772247 -AACCCT
1 AAACCCT
772253 -AACCCT
1 AAACCCT
772259 AAACCCCT
1 AAA-CCCT
772267 -AACCCT
1 AAACCCT
772273 AAACCCT
1 AAACCCT
772280 AAA-CCT
1 AAACCCT
772286 -AA-CCT
1 AAACCCT
*
772291 AAAAACCT
1 -AAACCCT
772299 AAA-CCT
1 AAACCCT
772305 AAACCCT
1 AAACCCT
772312 -AACCCT
1 AAACCCT
772318 --ACCCT
1 AAACCCT
772323 AAA-CCT
1 AAACCCT
772329 AAACCCT
1 AAACCCT
772336 AAACCCT
1 AAACCCT
**
772343 AAACCGA
1 AAACCCT
772350 AAACCCT
1 AAACCCT
772357 AAAACCCT
1 -AAACCCT
*
772365 AAACACT
1 AAACCCT
772372 AAACCCT
1 AAACCCT
* *
772379 --ACACG
1 AAACCCT
772384 AAACCCT
1 AAACCCT
*
772391 -AACCCG
1 AAACCCT
*
772397 AAACACT
1 AAACCCT
772404 AAA-CCT
1 AAACCCT
772410 AAA-CCT
1 AAACCCT
772416 AAACAACCT
1 AAAC--CCT
772425 AAACCCT
1 AAACCCT
772432 AAACCCT
1 AAACCCT
*
772439 AAACCCG
1 AAACCCT
772446 AAACCCT
1 AAACCCT
772453 AAACCCT
1 AAACCCT
772460 AAACCCT
1 AAACCCT
772467 AAACCCT
1 AAACCCT
*
772474 AAACACT
1 AAACCCT
772481 AAACCCT
1 AAACCCT
772488 AAACCCT
1 AAACCCT
* *
772495 AAAGCACG
1 AAA-CCCT
* *
772503 ACACCCG
1 AAACCCT
772510 AAACCCT
1 AAACCCT
*
772517 AAA-CCG
1 AAACCCT
772523 AAACCCT
1 AAACCCT
772530 AAAACCCT
1 -AAACCCT
772538 AAACCCT
1 AAACCCT
772545 AAACCCT
1 AAACCCT
772552 AAACCCT
1 AAACCCT
772559 AAACCACACT
1 AAA-C-C-CT
***
772569 AAA-AAA
1 AAACCCT
772575 AAACCCT
1 AAACCCT
772582 AAACCCT
1 AAACCCT
772589 AAACCCT
1 AAACCCT
*
772596 AAACCCG
1 AAACCCT
772603 AAACCCT
1 AAACCCT
772610 AAACCCT
1 AAACCCT
772617 -AACCCT
1 AAACCCT
*
772623 AAA---A
1 AAACCCT
772627 AAACCCT
1 AAACCCT
772634 AAACCCT
1 AAACCCT
772641 AAACCC-
1 AAACCCT
772647 AAA-CCT
1 AAACCCT
772653 AAACCCT
1 AAACCCT
*
772660 AAACCCG
1 AAACCCT
*
772667 AAA-CCA
1 AAACCCT
*
772673 AAACACT
1 AAACCCT
772680 AAACCCT
1 AAACCCT
772687 AAACCCT
1 AAACCCT
772694 -AACCCT
1 AAACCCT
772700 AAACCCT
1 AAACCCT
772707 AAACCCT
1 AAACCCT
772714 AAACCCT
1 AAACCCT
772721 AAACCCT
1 AAACCCT
772728 AAACCCT
1 AAACCCT
*
772735 GAAA-CCA
1 -AAACCCT
*
772742 AAAACCT
1 AAACCCT
772749 AAACCCT
1 AAACCCT
772756 AAACCCT
1 AAACCCT
772763 AAACCCT
1 AAACCCT
772770 AAACCCT
1 AAACCCT
772777 AAACCCT
1 AAACCCT
*
772784 AAACACT
1 AAACCCT
772791 AAA-CCT
1 AAACCCT
*
772797 AAACACT
1 AAACCCT
772804 AAAAACCCT
1 --AAACCCT
772813 AAACCCT
1 AAACCCT
772820 -AA-CCT
1 AAACCCT
*
772825 AAACACT
1 AAACCCT
772832 AAAAACCCT
1 --AAACCCT
772841 -AACCCT
1 AAACCCT
772847 AAACCCT
1 AAACCCT
772854 AAACCCT
1 AAACCCT
772861 AAACCCT
1 AAACCCT
772868 AAAACCCT
1 -AAACCCT
*
772876 AACCCCT
1 AAACCCT
772883 AAA-CCT
1 AAACCCT
772889 -AA-CCT
1 AAACCCT
772894 AAACCCCT
1 AAA-CCCT
772902 AAACCCT
1 AAACCCT
*
772909 AAACCCG
1 AAACCCT
772916 AGAACCC-
1 A-AACCCT
772923 -AACCCT
1 AAACCCT
772929 AAA-CCT
1 AAACCCT
772935 AAACCCT
1 AAACCCT
772942 AAACCCT
1 AAACCCT
772949 AAA-CCT
1 AAACCCT
*
772955 AAAACACT
1 -AAACCCT
772963 AAACCCT
1 AAACCCT
772970 -AACCCT
1 AAACCCT
772976 AAACCCT
1 AAACCCT
772983 AAACCCT
1 AAACCCT
772990 AAACCCT
1 AAACCCT
772997 -AACCCT
1 AAACCCT
773003 AAACACCT
1 AAAC-CCT
*
773011 AAA---A
1 AAACCCT
773015 AAACCC-
1 AAACCCT
773021 AAA-CCT
1 AAACCCT
773027 AAACCCT
1 AAACCCT
773034 AAACCCT
1 AAACCCT
773041 AGAACCCT
1 A-AACCCT
* *
773049 AAAACAT
1 AAACCCT
773056 AAAACCCT
1 -AAACCCT
773064 AAAACCCT
1 -AAACCCT
773072 -AACCCT
1 AAACCCT
773078 -AA-CCT
1 AAACCCT
773083 -AACCCT
1 AAACCCT
773089 AAA-CCT
1 AAACCCT
773095 -AACCCT
1 AAACCCT
773101 -AACCCT
1 AAACCCT
773107 -AACCCT
1 AAACCCT
773113 AAACCCT
1 AAACCCT
773120 AAACCCT
1 AAACCCT
773127 AAACCCT
1 AAACCCT
773134 AAACCCT
1 AAACCCT
773141 AAACCC-
1 AAACCCT
*
773147 GAACCCT
1 AAACCCT
773154 AAACCCT
1 AAACCCT
773161 AAACCCT
1 AAACCCT
773168 AAACCCT
1 AAACCCT
773175 -AACCCT
1 AAACCCT
773181 AAACCCT
1 AAACCCT
773188 -AACCCT
1 AAACCCT
773194 AAACCCT
1 AAACCCT
773201 AAACCCT
1 AAACCCT
773208 AAACCCT
1 AAACCCT
773215 AAACCC-
1 AAACCCT
773221 AAA-CCT
1 AAACCCT
773227 AAACCCT
1 AAACCCT
773234 AAAACCCT
1 -AAACCCT
773242 AAAAACCCT
1 --AAACCCT
773251 AAACCCT
1 AAACCCT
773258 -AACCCT
1 AAACCCT
773264 AAAAAACCCT
1 ---AAACCCT
773274 AAACCCT
1 AAACCCT
773281 AAACCCT
1 AAACCCT
773288 AAACCCT
1 AAACCCT
*
773295 AAAAAACCT
1 --AAACCCT
773304 AAACCCT
1 AAACCCT
773311 AAACCCT
1 AAACCCT
773318 AAACCCT
1 AAACCCT
773325 AAA-CCT
1 AAACCCT
773331 -AACCCT
1 AAACCCT
773337 AAACCCT
1 AAACCCT
773344 AAACCCT
1 AAACCCT
773351 AAAACCCT
1 -AAACCCT
773359 AAACCCT
1 AAACCCT
773366 AAAACCCT
1 -AAACCCT
*
773374 AAAACCT
1 AAACCCT
*
773381 AAA-CCG
1 AAACCCT
*
773387 AAACCCG
1 AAACCCT
*
773394 AAACCAT
1 AAACCCT
773401 -AACCCT
1 AAACCCT
773407 AAACCCT
1 AAACCCT
773414 AAAACCCT
1 -AAACCCT
773422 -AACCCT
1 AAACCCT
773428 -AACCCT
1 AAACCCT
773434 AAA-CCT
1 AAACCCT
*
773440 AACCCCT
1 AAACCCT
773447 -AACCCT
1 AAACCCT
773453 AAA-CCT
1 AAACCCT
*
773459 AAACCCG
1 AAACCCT
773466 AAACCCT
1 AAACCCT
773473 -AACCC-
1 AAACCCT
773478 AAA-CCT
1 AAACCCT
773484 AAA-CCT
1 AAACCCT
*
773490 AAACCCG
1 AAACCCT
773497 AAACCCT
1 AAACCCT
*
773504 -AACCAT
1 AAACCCT
773510 AAAACCCT
1 -AAACCCT
773518 -AACCCT
1 AAACCCT
*
773524 AAAACCT
1 AAACCCT
773531 AAACCCT
1 AAACCCT
773538 AAA-CC-
1 AAACCCT
*
773543 AGACCCT
1 AAACCCT
773550 AAAAACCCT
1 --AAACCCT
*
773559 AAAACCT
1 AAACCCT
773566 AAACTCCT
1 AAAC-CCT
773574 -AA-CCT
1 AAACCCT
773579 -AACCCT
1 AAACCCT
773585 AAACCCT
1 AAACCCT
773592 AAACCCT
1 AAACCCT
773599 AAGAACCCT
1 -A-AACCCT
773608 AAAACCCT
1 -AAACCCT
773616 AAACCCT
1 AAACCCT
773623 AAACACCT
1 AAAC-CCT
773631 AAAACCCT
1 -AAACCCT
*
773639 ACACCCT
1 AAACCCT
773646 AAACCCCT
1 AAA-CCCT
773654 AAACCCT
1 AAACCCT
773661 AAACCCT
1 AAACCCT
773668 -AACCCT
1 AAACCCT
773674 AAACCCT
1 AAACCCT
773681 AAACCCT
1 AAACCCT
773688 -AACCCT
1 AAACCCT
773694 AAACCCT
1 AAACCCT
773701 AAACCCT
1 AAACCCT
773708 AAACCCT
1 AAACCCT
773715 AAA-CCT
1 AAACCCT
773721 AAACCCT
1 AAACCCT
*
773728 AAAAACCCG
1 --AAACCCT
773737 AAA-CCT
1 AAACCCT
773743 AAACCCT
1 AAACCCT
773750 AAA-CCT
1 AAACCCT
773756 AAAAAACCCT
1 ---AAACCCT
*
773766 AAAACCT
1 AAACCCT
773773 AAACCCT
1 AAACCCT
773780 AAACCCT
1 AAACCCT
773787 AAAAACCCT
1 --AAACCCT
773796 -AA-CCT
1 AAACCCT
773801 AAA-CCT
1 AAACCCT
773807 AAACCCT
1 AAACCCT
*
773814 AAACCCG
1 AAACCCT
773821 AAACCCT
1 AAACCCT
773828 AAACCCT
1 AAACCCT
773835 AAACCCT
1 AAACCCT
773842 AAACCCT
1 AAACCCT
773849 AAACCCT
1 AAACCCT
*
773856 AAACCCG
1 AAACCCT
773863 AAACCCT
1 AAACCCT
773870 AAAACCCT
1 -AAACCCT
**
773878 AAACCGA
1 AAACCCT
773885 AAACCCT
1 AAACCCT
773892 AAACCCT
1 AAACCCT
773899 -AACCCT
1 AAACCCT
773905 AAA-CCT
1 AAACCCT
773911 AAAAAACCCT
1 ---AAACCCT
773921 AAAAACCCT
1 --AAACCCT
773930 AAACCCT
1 AAACCCT
773937 AAACCCT
1 AAACCCT
*
773944 GAAACCCGA
1 -AAACCC-T
773953 AAACCCT
1 AAACCCT
773960 AAAAAACCCT
1 ---AAACCCT
773970 AAACCCT
1 AAACCCT
773977 AAACCCT
1 AAACCCT
773984 AAACCC-
1 AAACCCT
773990 AAACCCT
1 AAACCCT
773997 AAACCCT
1 AAACCCT
* *
774004 AAAACAT
1 AAACCCT
*
774011 AAACCCG
1 AAACCCT
774018 AAACCCT
1 AAACCCT
774025 AAACCCT
1 AAACCCT
774032 AAACCCCT
1 AAA-CCCT
774040 AAACCCT
1 AAACCCT
*
774047 -AACACT
1 AAACCCT
774053 -AACCC-
1 AAACCCT
774058 AAACCCT
1 AAACCCT
774065 AAA-CCT
1 AAACCCT
774071 AAACCCT
1 AAACCCT
774078 AAAACCCT
1 -AAACCCT
774086 AAACCCT
1 AAACCCT
*
774093 AAACCAT
1 AAACCCT
774100 AAACCCT
1 AAACCCT
*
774107 AAACCCG
1 AAACCCT
774114 AAACCCT
1 AAACCCT
774121 AAACCCT
1 AAACCCT
*
774128 AAACACT
1 AAACCCT
774135 AAACCCT
1 AAACCCT
774142 AAACCCT
1 AAACCCT
774149 AAACCCT
1 AAACCCT
*
774156 CAACCCT
1 AAACCCT
774163 AAAACCCT
1 -AAACCCT
*
774171 AAACCCG
1 AAACCCT
774178 AAACCCT
1 AAACCCT
774185 AAAGCCCT
1 AAA-CCCT
774193 AAACCCT
1 AAACCCT
774200 AAA-CCT
1 AAACCCT
774206 AAAACCCT
1 -AAACCCT
774214 -AACCCT
1 AAACCCT
*
774220 AAACCAT
1 AAACCCT
774227 AAA-CCT
1 AAACCCT
*
774233 AAACCCG
1 AAACCCT
774240 AAACCCT
1 AAACCCT
774247 AAA-CCT
1 AAACCCT
*
774253 AACCCCT
1 AAACCCT
774260 AAACCCT
1 AAACCCT
774267 AAACCCT
1 AAACCCT
774274 AAACCCT
1 AAACCCT
774281 -AACCCT
1 AAACCCT
774287 AAA-CCT
1 AAACCCT
774293 AAACCCT
1 AAACCCT
774300 -AA-CCT
1 AAACCCT
774305 AAA-CCT
1 AAACCCT
774311 -AACCCT
1 AAACCCT
774317 AAA-CCT
1 AAACCCT
774323 AAA--CT
1 AAACCCT
774328 AAACCCT
1 AAACCCT
*
774335 AAACCTT
1 AAACCCT
774342 AAA-CCT
1 AAACCCT
774348 AAACCCCT
1 AAA-CCCT
*
774356 AAACCCG
1 AAACCCT
774363 AAACCCT
1 AAACCCT
774370 AAAACCCT
1 -AAACCCT
774378 AAACCCT
1 AAACCCT
*
774385 AAACCCA
1 AAACCCT
774392 AACTACCCT
1 AA--ACCCT
774401 AAACCC-
1 AAACCCT
*
774407 GAACCCT
1 AAACCCT
* *
774414 AAACACG
1 AAACCCT
774421 AAACCCT
1 AAACCCT
774428 AAACCCT
1 AAACCCT
774435 AAACCCT
1 AAACCCT
774442 AAACCCT
1 AAACCCT
774449 AAACCCCT
1 AAA-CCCT
*
774457 AAACCAT
1 AAACCCT
774464 AAAAACCCT
1 --AAACCCT
774473 AAACCCT
1 AAACCCT
774480 AAACCCT
1 AAACCCT
*
774487 AAAACCT
1 AAACCCT
774494 AAACCCT
1 AAACCCT
774501 -AACCACT
1 AAACC-CT
774508 AAACCCT
1 AAACCCT
774515 AAACCCT
1 AAACCCT
*
774522 AAACCAT
1 AAACCCT
774529 AAAACCCT
1 -AAACCCT
774537 -AA--CT
1 AAACCCT
774541 AAACCCT
1 AAACCCT
*
774548 -AACCCG
1 AAACCCT
774554 AAACCCT
1 AAACCCT
*
774561 AAGCCCT
1 AAACCCT
774568 AAACCACCT
1 AAA-C-CCT
774577 AAACCCT
1 AAACCCT
774584 AAA--CT
1 AAACCCT
774589 AAACCCT
1 AAACCCT
774596 AAA-CCT
1 AAACCCT
*
774602 AAACACT
1 AAACCCT
774609 AAAGCCCTT
1 AAA-CCC-T
774618 AAACCCT
1 AAACCCT
774625 AAACCCT
1 AAACCCT
774632 AAACCCT
1 AAACCCT
774639 AAACCCT
1 AAACCCT
774646 AAACCCT
1 AAACCCT
774653 AAACCCT
1 AAACCCT
774660 AAAACCCT
1 -AAACCCT
*
774668 AAACCCG
1 AAACCCT
774675 AAACCCT
1 AAACCCT
*
774682 AAACCCG
1 AAACCCT
774689 AAACCCT
1 AAACCCT
774696 AAACCCT
1 AAACCCT
*
774703 AAAACCT
1 AAACCCT
774710 AAACCCT
1 AAACCCT
774717 AAACCCT
1 AAACCCT
774724 AAACCCT
1 AAACCCT
774731 AAACGCCT
1 AAAC-CCT
774739 -AACCC-
1 AAACCCT
774744 AAACCCT
1 AAACCCT
774751 AAACCCT
1 AAACCCT
774758 AAAGACCCT
1 -AA-ACCCT
774767 AAACCCT
1 AAACCCT
*
774774 AAA-CCG
1 AAACCCT
774780 AAACCCT
1 AAACCCT
*
774787 --ACCCA
1 AAACCCT
774792 AAACCACT
1 AAACC-CT
*
774800 AAACACGT
1 AAAC-CCT
774808 AAACCCT
1 AAACCCT
774815 AAACCC-
1 AAACCCT
774821 AAA-CCT
1 AAACCCT
774827 -AACCCT
1 AAACCCT
*
774833 AAACCCG
1 AAACCCT
*
774840 AACCCCT
1 AAACCCT
*
774847 -AACACT
1 AAACCCT
774853 AAA-CCT
1 AAACCCT
774859 AAA-CCT
1 AAACCCT
774865 AAACCCT
1 AAACCCT
774872 -AACCCT
1 AAACCCT
774878 AAACCCT
1 AAACCCT
*
774885 AAACCAT
1 AAACCCT
*
774892 AAA---A
1 AAACCCT
774896 AAACCCT
1 AAACCCT
774903 AAA-CCT
1 AAACCCT
774909 AAACCCT
1 AAACCCT
774916 AAACCCT
1 AAACCCT
774923 AAACCCT
1 AAACCCT
774930 -AACCCT
1 AAACCCT
*
774936 AACCCCT
1 AAACCCT
774943 AAACCCT
1 AAACCCT
774950 AAACCCT
1 AAACCCT
774957 -AACCC-
1 AAACCCT
*
774962 GAACCCT
1 AAACCCT
774969 AAA-CCT
1 AAACCCT
774975 -AACCCT
1 AAACCCT
774981 AAAAAACCCT
1 ---AAACCCT
774991 AAACCCT
1 AAACCCT
*
774998 AAACACT
1 AAACCCT
775005 AAAACCCT
1 -AAACCCT
775013 AAACCCT
1 AAACCCT
*
775020 AAACTCCG
1 AAAC-CCT
775028 AAACCCCT
1 AAA-CCCT
775036 AAACCCT
1 AAACCCT
775043 AAAACCCT
1 -AAACCCT
*
775051 AAACCCG
1 AAACCCT
775058 AAGACACCT
1 AA-AC-CCT
775067 AAACCCT
1 AAACCCT
775074 AAACCCT
1 AAACCCT
*
775081 AAAACACT
1 -AAACCCT
775089 AAACCCT
1 AAACCCT
775096 AAAAACCCT
1 --AAACCCT
775105 AAACCCT
1 AAACCCT
775112 AAACCCT
1 AAACCCT
*
775119 CAA-CCT
1 AAACCCT
775125 AAAAAACCCT
1 ---AAACCCT
*
775135 AAACACT
1 AAACCCT
*
775142 ACACCCT
1 AAACCCT
775149 AAA-CCT
1 AAACCCT
775155 AAACCCT
1 AAACCCT
775162 -AACCCT
1 AAACCCT
775168 AAAAACCCT
1 --AAACCCT
*
775177 AAAACCT
1 AAACCCT
775184 -AACCCT
1 AAACCCT
775190 -AACCCT
1 AAACCCT
*
775196 AAACCCG
1 AAACCCT
775203 AAACCCAT
1 AAACCC-T
775211 AAACGCCT
1 AAAC-CCT
775219 AAACCCT
1 AAACCCT
775226 -AACCCT
1 AAACCCT
775232 AAACCCT
1 AAACCCT
775239 AAA-CCT
1 AAACCCT
775245 AAA-CCT
1 AAACCCT
775251 AAACCCT
1 AAACCCT
775258 AAACCCT
1 AAACCCT
775265 AAACCCT
1 AAACCCT
775272 AAACCCT
1 AAACCCT
775279 -AACCCT
1 AAACCCT
775285 AAACCCT
1 AAACCCT
775292 -AACCCT
1 AAACCCT
775298 -AACCCT
1 AAACCCT
775304 AAACCCTT
1 AAACCC-T
775312 AAACCCT
1 AAACCCT
775319 -AA-CCT
1 AAACCCT
775324 AAACCC-
1 AAACCCT
*
775330 GAACCCT
1 AAACCCT
775337 AAACCCT
1 AAACCCT
775344 AAACCCT
1 AAACCCT
775351 AAA-CCT
1 AAACCCT
775357 AAACCCT
1 AAACCCT
775364 AAACCCT
1 AAACCCT
**
775371 AAA--AA
1 AAACCCT
775376 AAACCCT
1 AAACCCT
775383 AAACCCT
1 AAACCCT
775390 AAA-CCT
1 AAACCCT
775396 -AACCCT
1 AAACCCT
775402 AAACCCT
1 AAACCCT
775409 AAAAACCCT
1 --AAACCCT
775418 AAAACCCT
1 -AAACCCT
775426 AAACCCT
1 AAACCCT
775433 -AACCCT
1 AAACCCT
*
775439 AAACCCA
1 AAACCCT
775446 AAACCCT
1 AAACCCT
*
775453 AAACCCG
1 AAACCCT
775460 AAACCCT
1 AAACCCT
775467 AAAACCCT
1 -AAACCCT
*
775475 -AACCCG
1 AAACCCT
775481 AAAGCCCT
1 AAA-CCCT
775489 AAA--CT
1 AAACCCT
775494 AAAACCGCT
1 -AAACC-CT
775503 AAACCCT
1 AAACCCT
775510 AAACCCT
1 AAACCCT
775517 AAAACCCT
1 -AAACCCT
775525 AAACCCT
1 AAACCCT
*
775532 -AACCAT
1 AAACCCT
775538 AAACCCT
1 AAACCCT
775545 AAACCCT
1 AAACCCT
775552 -AACCCT
1 AAACCCT
775558 AAACCCT
1 AAACCCT
*
775565 AAACCCCG
1 AAA-CCCT
775573 AAACCCCT
1 AAA-CCCT
775581 AAACCCT
1 AAACCCT
*
775588 AAAAACCAT
1 --AAACCCT
*
775597 AAGCCCT
1 AAACCCT
775604 AAACCACT
1 AAACC-CT
775612 -AACCCT
1 AAACCCT
775618 AAAACCCT
1 -AAACCCT
775626 AAACCCT
1 AAACCCT
*
775633 AAACCCGA
1 AAACCC-T
*
775641 AAACCCG
1 AAACCCT
*
775648 AAACCCG
1 AAACCCT
775655 AAACCCT
1 AAACCCT
*
775662 -AACCCG
1 AAACCCT
775668 AAACCCT
1 AAACCCT
*
775675 AAAAACCT
1 -AAACCCT
*
775683 AAACCAT
1 AAACCCT
775690 AAACCCT
1 AAACCCT
775697 AAA-CCT
1 AAACCCT
775703 AAA-CCT
1 AAACCCT
775709 -AACCCT
1 AAACCCT
775715 -AACCCT
1 AAACCCT
775721 AAACCCT
1 AAACCCT
775728 AAACCCT
1 AAACCCT
775735 AAACCC-
1 AAACCCT
775741 AAACCCT
1 AAACCCT
775748 AAACCCT
1 AAACCCT
775755 AAACCCT
1 AAACCCT
775762 -AA-CCT
1 AAACCCT
775767 AAACCCT
1 AAACCCT
775774 AAAACCCT
1 -AAACCCT
**
775782 AAACCGA
1 AAACCCT
*
775789 AAACCCG
1 AAACCCT
775796 AAACGCCT
1 AAAC-CCT
775804 AAA-CCT
1 AAACCCT
775810 AAA-CCT
1 AAACCCT
775816 -AACCCT
1 AAACCCT
775822 -AACCCT
1 AAACCCT
775828 AAACCCT
1 AAACCCT
* **
775835 ACACCGA
1 AAACCCT
* *
775842 AAACACG
1 AAACCCT
775849 AAACCCT
1 AAACCCT
*
775856 AAACCCG
1 AAACCCT
775863 AAACCCT
1 AAACCCT
*
775870 AAAGACCT
1 AAA-CCCT
775878 AAAAAACCCT
1 ---AAACCCT
775888 AAA-CCT
1 AAACCCT
775894 -AA-CCT
1 AAACCCT
775899 AAACCCT
1 AAACCCT
*
775906 AAACCCG
1 AAACCCT
775913 AAACCCT
1 AAACCCT
*
775920 ACACCCT
1 AAACCCT
775927 AAACCCT
1 AAACCCT
*
775934 GAACCCT
1 AAACCCT
775941 -AACACC-
1 AAAC-CCT
775947 -AACCCT
1 AAACCCT
*
775953 AAAACCCG
1 -AAACCCT
775961 AAACCC-
1 AAACCCT
775967 AAACCCT
1 AAACCCT
775974 AAAACCCT
1 -AAACCCT
*
775982 AAACGCCG
1 AAAC-CCT
775990 AAA-CCT
1 AAACCCT
*
775996 AAACCCG
1 AAACCCT
776003 AAACCCT
1 AAACCCT
776010 AAACCCT
1 AAACCCT
776017 AAACCCT
1 AAACCCT
*
776024 AAAACCT
1 AAACCCT
776031 AAA-CCT
1 AAACCCT
*
776037 AAACAC-
1 AAACCCT
776043 AAACCCT
1 AAACCCT
776050 AAACACCT
1 AAAC-CCT
776058 AAACCC-
1 AAACCCT
* *
776064 GAACACT
1 AAACCCT
776071 AAACCCT
1 AAACCCT
776078 AAAACCCT
1 -AAACCCT
776086 AAACCCT
1 AAACCCT
776093 -AACCCT
1 AAACCCT
776099 AAA-CCT
1 AAACCCT
776105 AAACCCT
1 AAACCCT
776112 -AACCCT
1 AAACCCT
776118 AAACCCT
1 AAACCCT
776125 AAACCCT
1 AAACCCT
776132 AAA-CCT
1 AAACCCT
776138 -AACCCT
1 AAACCCT
776144 AAA-CCT
1 AAACCCT
776150 AAACCCT
1 AAACCCT
776157 AAAACCCT
1 -AAACCCT
776165 AAACCCT
1 AAACCCT
776172 AAACCCT
1 AAACCCT
776179 AAAAGACCCT
1 --AA-ACCCT
*
776189 AAAAAAACCT
1 ---AAACCCT
776199 AAACCCT
1 AAACCCT
776206 AAACCCT
1 AAACCCT
776213 AAAACCCT
1 -AAACCCT
776221 AAACCCT
1 AAACCCT
776228 AAACCCT
1 AAACCCT
776235 AAGA-CCT
1 AA-ACCCT
776242 AAACCCT
1 AAACCCT
776249 AAACCCT
1 AAACCCT
**
776256 AAACAAT
1 AAACCCT
776263 AAACCCT
1 AAACCCT
776270 -AACCCT
1 AAACCCT
776276 AAACCCT
1 AAACCCT
*
776283 AAACCCG
1 AAACCCT
776290 AAA-CCT
1 AAACCCT
776296 AAACCCT
1 AAACCCT
776303 -AACCC-
1 AAACCCT
776308 AAACCCT
1 AAACCCT
776315 AAACCCT
1 AAACCCT
776322 AAACCCT
1 AAACCCT
*
776329 AAA-CCG
1 AAACCCT
776335 AAACCCT
1 AAACCCT
776342 AAACCCT
1 AAACCCT
*
776349 -AACCCG
1 AAACCCT
776355 AAACCCT
1 AAACCCT
776362 AAAACCCT
1 -AAACCCT
776370 -AA-CCT
1 AAACCCT
776375 AAACCCT
1 AAACCCT
776382 AAACCCGT
1 AAACCC-T
776390 AAACCCT
1 AAACCCT
776397 AAACCCT
1 AAACCCT
776404 AAACCGCCT
1 AAA-C-CCT
776413 AAACCACCCT
1 -AA--ACCCT
776423 AAACGCCT
1 AAAC-CCT
776431 AAAAAACCCT
1 ---AAACCCT
776441 AAACCCT
1 AAACCCT
776448 AAAGCCCT
1 AAA-CCCT
776456 AAAACCCT
1 -AAACCCT
776464 -AACCCT
1 AAACCCT
776470 AAACCCT
1 AAACCCT
*
776477 -AA-CAT
1 AAACCCT
776482 AAACCCT
1 AAACCCT
776489 AAACCCT
1 AAACCCT
776496 AAAACCCT
1 -AAACCCT
776504 AAACCCT
1 AAACCCT
* *
776511 AGAAAACACG
1 ---AAACCCT
776521 AAACCCT
1 AAACCCT
*
776528 AAAACCT
1 AAACCCT
776535 AAACCCTAAT
1 AAACCC---T
776545 AAACCCT
1 AAACCCT
*
776552 AAACACT
1 AAACCCT
776559 AAAGCCCT
1 AAA-CCCT
*
776567 AAA-CCG
1 AAACCCT
776573 AAACCCT
1 AAACCCT
*
776580 AAACAACCCG
1 --A-AACCCT
*
776590 AAA-AC-
1 AAACCCT
776595 AAACCC-
1 AAACCCT
776601 AAACCCCT
1 AAA-CCCT
*
776609 AAACCAT
1 AAACCCT
776616 AAACCCT
1 AAACCCT
*
776623 AAAACCT
1 AAACCCT
*
776630 AAA---A
1 AAACCCT
776634 AAACCCT
1 AAACCCT
776641 -AACCCT
1 AAACCCT
*
776647 AAACACT
1 AAACCCT
*
776654 AAGCCCT
1 AAACCCT
776661 AAACCCT
1 AAACCCT
776668 -AA-CCT
1 AAACCCT
776673 AAACCCT
1 AAACCCT
776680 AAA--CT
1 AAACCCT
776685 AAA-CCT
1 AAACCCT
*
776691 AAACCCG
1 AAACCCT
776698 AAACCCT
1 AAACCCT
776705 AAACCCT
1 AAACCCT
*
776712 AAAACACT
1 -AAACCCT
*
776720 -AACCCG
1 AAACCCT
776726 AAACCCT
1 AAACCCT
776733 -AACCC-
1 AAACCCT
776738 AAACCCT
1 AAACCCT
776745 AAACCCT
1 AAACCCT
776752 -AACCCT
1 AAACCCT
776758 AAACCCT
1 AAACCCT
776765 -AA-CCT
1 AAACCCT
776770 -AA-CCT
1 AAACCCT
**
776775 AAAAACT
1 AAACCCT
*
776782 AAA-CCG
1 AAACCCT
776788 AAA-CCT
1 AAACCCT
776794 AAACCCT
1 AAACCCT
776801 AAAACCCT
1 -AAACCCT
*
776809 AAACACT
1 AAACCCT
776816 AAAACCCT
1 -AAACCCT
776824 AAA-CCT
1 AAACCCT
776830 AAACCC-
1 AAACCCT
776836 -AACCCT
1 AAACCCT
776842 AAACCCT
1 AAACCCT
776849 AAACCCT
1 AAACCCT
776856 AAACCCT
1 AAACCCT
776863 AAACCCT
1 AAACCCT
776870 AAACCCT
1 AAACCCT
776877 AAACCCT
1 AAACCCT
*
776884 -AACCCGAA
1 AAACCC--T
**
776892 AAACCAA
1 AAACCCT
776899 AAACACCGT
1 AAAC-CC-T
776908 AAAACCC-
1 -AAACCCT
*
776915 GAACCC-
1 AAACCCT
*
776921 -AACCCGA
1 AAACCC-T
776928 AAGACCGCT
1 AA-ACC-CT
776937 AAACCCTCT
1 AAA-CC-CT
776946 AAAACCCT
1 -AAACCCT
*
776954 GAAACCCG
1 -AAACCCT
776962 AAACCC-
1 AAACCCT
* *
776968 GAACACT
1 AAACCCT
776975 AAA--CT
1 AAACCCT
776980 AAACCCT
1 AAACCCT
*
776987 AAACCCG
1 AAACCCT
*
776994 AAACCCG
1 AAACCCT
777001 AAA-CCT
1 AAACCCT
777007 AAACCCT
1 AAACCCT
777014 -AACCCT
1 AAACCCT
777020 AAACCCT
1 AAACCCT
*
777027 AAACCCG
1 AAACCCT
*
777034 AAA-CCG
1 AAACCCT
777040 AAACCCT
1 AAACCCT
777047 AAACCCT
1 AAACCCT
777054 -AACCCT
1 AAACCCT
777060 AAACCCT
1 AAACCCT
777067 AAACCCT
1 AAACCCT
*
777074 AAACACT
1 AAACCCT
777081 AAACCCT
1 AAACCCT
777088 GAAA-CCT
1 -AAACCCT
777095 AAACCCT
1 AAACCCT
777102 AAACCCTCT
1 AAA-CC-CT
777111 AAACCCT
1 AAACCCT
777118 -AACCCT
1 AAACCCT
777124 AAACCCT
1 AAACCCT
777131 -AA-CCT
1 AAACCCT
777136 AAACCCT
1 AAACCCT
777143 AAATCCCT
1 AAA-CCCT
777151 AAAACCC-
1 -AAACCCT
*
777158 AAACCCAA
1 AAACCC-T
777166 AACACCCT
1 AA-ACCCT
*
777174 AACCCCT
1 AAACCCT
777181 -AACCCT
1 AAACCCT
777187 AAACCCT
1 AAACCCT
777194 AAAACCCT
1 -AAACCCT
777202 AAACCCT
1 AAACCCT
777209 AAACCCT
1 AAACCCT
777216 -AACCCT
1 AAACCCT
*
777222 ACACCC-
1 AAACCCT
777228 ATAACCCTATT
1 A-AACCC---T
777239 AAACCCT
1 AAACCCT
777246 AAACCCT
1 AAACCCT
777253 AAACCCT
1 AAACCCT
*
777260 -AA-CAT
1 AAACCCT
777265 AAACCCT
1 AAACCCT
777272 AAACCCT
1 AAACCCT
777279 AAACCCT
1 AAACCCT
777286 AAACCCT
1 AAACCCT
777293 AAACCCT
1 AAACCCT
777300 AAACCCT
1 AAACCCT
777307 AAACCCT
1 AAACCCT
777314 AAACCCT
1 AAACCCT
777321 AAACCCT
1 AAACCCT
777328 AAACCCCT
1 AAA-CCCT
777336 AAACCCT
1 AAACCCT
777343 AAACCCT
1 AAACCCT
*
777350 AAACCCA
1 AAACCCT
777357 AAACCCT
1 AAACCCT
777364 AAACCCT
1 AAACCCT
777371 AAACCCT
1 AAACCCT
*
777378 AACCCCT
1 AAACCCT
777385 AAAGCCCT
1 AAA-CCCT
777393 AAACCCT
1 AAACCCT
777400 AAACCCT
1 AAACCCT
777407 AAA-CCT
1 AAACCCT
777413 AAAACCCT
1 -AAACCCT
777421 -AACCCT
1 AAACCCT
777427 AAA-CCT
1 AAACCCT
777433 AAA-CCT
1 AAACCCT
777439 AAACCCCT
1 AAA-CCCT
777447 AAAGCCCT
1 AAA-CCCT
777455 AAACCCT
1 AAACCCT
777462 AAACCCT
1 AAACCCT
777469 AAACCCT
1 AAACCCT
777476 -AACCACT
1 AAACC-CT
777483 AAACGCCT
1 AAAC-CCT
777491 AAACCCCT
1 AAA-CCCT
777499 -AACCCT
1 AAACCCT
*
777505 AACCCCT
1 AAACCCT
*
777512 AAA-CCA
1 AAACCCT
777518 AAACCCT
1 AAACCCT
777525 AAACCCT
1 AAACCCT
777532 AAA--CT
1 AAACCCT
*
777537 AAACCCA
1 AAACCCT
*
777544 AAAACCT
1 AAACCCT
*
777551 AAACCCA
1 AAACCCT
777558 AAACCCT
1 AAACCCT
*
777565 AAAAAACCCA
1 ---AAACCCT
777575 AAACCCT
1 AAACCCT
777582 AAACCCT
1 AAACCCT
* *
777589 AAAACCA
1 AAACCCT
777596 AAACCCT
1 AAACCCT
777603 AAA--C-
1 AAACCCT
777607 AAACCC-
1 AAACCCT
777613 AAACCCT
1 AAACCCT
777620 AAACCCT
1 AAACCCT
777627 AAACCCT
1 AAACCCT
*
777634 AAACCCCG
1 AAA-CCCT
777642 AAACCCT
1 AAACCCT
777649 AAAAACCCT
1 --AAACCCT
*
777658 AAACCAT
1 AAACCCT
777665 AAACCCCT
1 AAA-CCCT
777673 AAACCCT
1 AAACCCT
777680 AAA-CCT
1 AAACCCT
**
777686 -AACCGAA
1 AAACC-CT
*
777693 AAAACCT
1 AAACCCT
777700 AAACCCT
1 AAACCCT
*
777707 AAACCCG
1 AAACCCT
777714 ATAACCCT
1 A-AACCCT
*
777722 AACCCCT
1 AAACCCT
*
777729 AAACCAT
1 AAACCCT
777736 AAACCCT
1 AAACCCT
777743 AAAACCCT
1 -AAACCCT
777751 AAACCCT
1 AAACCCT
777758 AAACCCT
1 AAACCCT
777765 -AACCCT
1 AAACCCT
777771 AAACCCT
1 AAACCCT
777778 AAAACCCT
1 -AAACCCT
*
777786 AAAACC-
1 AAACCCT
777792 AAA-CCT
1 AAACCCT
777798 -AACCCT
1 AAACCCT
777804 AAA-CCT
1 AAACCCT
777810 AAAAACCCT
1 --AAACCCT
777819 AAACACCCT
1 -AA-ACCCT
777828 AAA-CCT
1 AAACCCT
777834 -AACCCT
1 AAACCCT
777840 AAACCCT
1 AAACCCT
777847 AAACCCT
1 AAACCCT
777854 AAACCCT
1 AAACCCT
**
777861 AAAACCGA
1 -AAACCCT
777869 AAACCCT
1 AAACCCT
777876 AAAAAACCCT
1 ---AAACCCT
777886 -AACCCT
1 AAACCCT
777892 -AACCCT
1 AAACCCT
777898 AAAACCCT
1 -AAACCCT
*
777906 AAACACT
1 AAACCCT
777913 AAACCCT
1 AAACCCT
777920 AAACCCT
1 AAACCCT
777927 AAACCCT
1 AAACCCT
*
777934 AAACCCG
1 AAACCCT
777941 AAACCCT
1 AAACCCT
777948 AAACGCCT
1 AAAC-CCT
777956 -AACCCT
1 AAACCCT
777962 AAACCCT
1 AAACCCT
777969 AAACCCT
1 AAACCCT
777976 AAACCCT
1 AAACCCT
*
777983 -AA-CCG
1 AAACCCT
777988 AAACCCT
1 AAACCCT
*
777995 AGATCCCT
1 A-AACCCT
778003 AAACCCT
1 AAACCCT
778010 AAACCCT
1 AAACCCT
778017 AAACCCT
1 AAACCCT
778024 AAACCCT
1 AAACCCT
778031 AAACCCT
1 AAACCCT
*
778038 AAAAAACCT
1 --AAACCCT
778047 AAACCCT
1 AAACCCT
778054 AAAACCCT
1 -AAACCCT
*
778062 AAACACT
1 AAACCCT
778069 AAACCCT
1 AAACCCT
778076 AAACCCT
1 AAACCCT
778083 AAACCCT
1 AAACCCT
778090 AAA-CCT
1 AAACCCT
778096 AAACCCT
1 AAACCCT
*
778103 AAACCCCG
1 AAA-CCCT
778111 AAACCCT
1 AAACCCT
778118 AAACCCT
1 AAACCCT
778125 AAACCCT
1 AAACCCT
778132 AAACCCCT
1 AAA-CCCT
*
778140 AAACAAC-
1 AAAC-CCT
778147 AAA--CT
1 AAACCCT
778152 AAACCCT
1 AAACCCT
778159 AAA-CCT
1 AAACCCT
778165 -AACCCT
1 AAACCCT
778171 AAACCCT
1 AAACCCT
778178 AAACCCT
1 AAACCCT
778185 AAACCCT
1 AAACCCT
778192 AAACCCT
1 AAACCCT
778199 AAACCCT
1 AAACCCT
778206 AAACCCT
1 AAACCCT
778213 -AACCCT
1 AAACCCT
778219 AAACCCT
1 AAACCCT
778226 AGAAAACCCT
1 ---AAACCCT
778236 AAAACCCCT
1 -AAA-CCCT
778245 -AACCACT
1 AAACC-CT
778252 AAACCCT
1 AAACCCT
778259 AAAACCCT
1 -AAACCCT
778267 AAAACCCT
1 -AAACCCT
*
778275 AAACCAT
1 AAACCCT
778282 AAACCCT
1 AAACCCT
778289 AAACCCT
1 AAACCCT
*
778296 AAA---A
1 AAACCCT
778300 AAACCCT
1 AAACCCT
778307 -AACCCT
1 AAACCCT
778313 AAACCCT
1 AAACCCT
778320 AAACCCT
1 AAACCCT
778327 AAAACCCT
1 -AAACCCT
*
778335 AAACACT
1 AAACCCT
*
778342 AAACACT
1 AAACCCT
*
778349 AAACCCCGA
1 AAA-CCC-T
778358 AAACCCT
1 AAACCCT
778365 AAACCCT
1 AAACCCT
778372 AAAAAACCCT
1 ---AAACCCT
778382 ATAACCCT
1 A-AACCCT
778390 AAACCCT
1 AAACCCT
778397 AAA-CCT
1 AAACCCT
778403 AAACCCT
1 AAACCCT
* *
778410 AAACACG
1 AAACCCT
778417 AAACCCT
1 AAACCCT
778424 AAACCCT
1 AAACCCT
778431 AAACCCT
1 AAACCCT
778438 -AACCCT
1 AAACCCT
778444 AAACCCT
1 AAACCCT
778451 AAACCCT
1 AAACCCT
778458 AAACCCT
1 AAACCCT
778465 AAACCCCT
1 AAA-CCCT
778473 AAACCCT
1 AAACCCT
778480 AAAAAACCCT
1 ---AAACCCT
778490 AAACCCCT
1 AAA-CCCT
778498 AAA-CCT
1 AAACCCT
778504 -AA-CCT
1 AAACCCT
778509 AAACCC
1 AAACCC
778515 CACCCCCCCC
Statistics
Matches: 10582, Mismatches: 817, Indels: 1950
0.79 0.06 0.15
Matches are distributed among these distances:
4 45 0.00
5 360 0.03
6 2200 0.21
7 6093 0.58
8 1309 0.12
9 353 0.03
10 193 0.02
11 28 0.00
12 1 0.00
ACGTcount: A:0.45, C:0.40, G:0.02, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:766196 original size:15 final size:15
Alignment explanation
Indices: 766176--766227 Score: 65
Period size: 15 Copynumber: 3.6 Consensus size: 15
766166 AAACCTAAAC
766176 CCTAAACCCGAAGAA
1 CCTAAACCCGAAGAA
766191 CCTAAACCCGAA-AA
1 CCTAAACCCGAAGAA
*
766205 CCCTAAACCCTAAG--
1 -CCTAAACCCGAAGAA
766219 CCTAAACCC
1 CCTAAACCC
766228 TAACCTAAAC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
13 9 0.26
14 2 0.06
15 23 0.68
ACGTcount: A:0.42, C:0.40, G:0.08, T:0.10
Consensus pattern (15 bp):
CCTAAACCCGAAGAA
Found at i:766208 original size:30 final size:28
Alignment explanation
Indices: 766141--766227 Score: 92
Period size: 30 Copynumber: 3.2 Consensus size: 28
766131 TTAAAACCCT
* *
766141 AACCCG-AAA-CCTAAACCCTAACCCTA
1 AACCCGAAAACCCTAAACCCGAAGCCTA
*
766167 AA-CC-TAAACCCTAAACCCGAAGAACCTA
1 AACCCGAAAACCCTAAACCCGAAG--CCTA
*
766195 AACCCGAAAACCCTAAACCCTAAGCCTA
1 AACCCGAAAACCCTAAACCCGAAGCCTA
766223 AACCC
1 AACCC
766228 TAACCTAAAC
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
25 5 0.10
26 13 0.25
28 15 0.29
29 2 0.04
30 16 0.31
ACGTcount: A:0.44, C:0.40, G:0.06, T:0.10
Consensus pattern (28 bp):
AACCCGAAAACCCTAAACCCGAAGCCTA
Found at i:768284 original size:11 final size:11
Alignment explanation
Indices: 768250--768293 Score: 52
Period size: 11 Copynumber: 3.7 Consensus size: 11
768240 CCTAAACCGA
768250 AACCCTACACCC
1 AACCCTA-ACCC
*
768262 TAAACCTAAACCC
1 -AACCCT-AACCC
768275 AACCCTAACCC
1 AACCCTAACCC
768286 AACCCTAA
1 AACCCTAA
768294 AACCCTAAAC
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 13 0.46
12 5 0.18
13 9 0.32
14 1 0.04
ACGTcount: A:0.41, C:0.48, G:0.00, T:0.11
Consensus pattern (11 bp):
AACCCTAACCC
Found at i:778523 original size:1 final size:1
Alignment explanation
Indices: 778512--780465 Score: 2603
Period size: 1 Copynumber: 1954.0 Consensus size: 1
778502 CTAACCTAAA
* * * *
778512 CCCCACCCCCCCCCCCCCCCCCCCACCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
778577 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * *
778642 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCACCCCCCCCCCCCCCCCCCCCAC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
778707 CCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * *
778772 CCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCACCCCCCCCACC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * *
778837 CCACCACCCCCCCCCCCCCCCCCCCACCACACCCCCCCCCCCCCCACCCCCCCCCACCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
778902 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * *
778967 ACCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779032 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * *
779097 CCACCCACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * *
779162 CCCCACCCCCACCCCCCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779227 CCCCCCCCCCCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
779292 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * *
779357 CCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCA
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779422 CCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779487 CCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779552 CCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * *
779617 CCCCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779682 CCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779747 CCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
779812 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
** * * * * *** * *
779877 CCAGCCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCAAACCCCCCCCGCCCA
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * * * *****
779942 ACCCCCCCCCCCCCACCCCCCCCCCCCCCCCAACCCACCCCCCACCCCCCGCATAAACCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
780007 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*** ** * **** * * * * *
780072 AAACCCTACGCCCTAAACCCCCCCCACCCCCCACCCCCCCCCCCCCCCCCACACCCCCACCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ** * * * * *
780137 ACCCCCCCCCCCCACCCCCAACACCCCCCCCCCCCCCCCCCCCCACCACCCCCCACCACCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * * * * * * *
780202 CCCCCCCCACCCCCCCCCCCCACCCACCCACCCCACCCCGCCCCCACCCCCACCCACCACACCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * * * ** * * *
780267 CCCCCCCCCACCCCCCACCACACCACCAACACCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * ***** * ** *
780332 CCCCACCCCCCCACCCCAAAAACCCCCCCCCCCCCCACCCCCCCCCCCCCCCCAACCCCCCCCCA
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* ** * * * * *
780397 CCCCCCCCCCCCACCCAACCACCCCCCCACCCCCCCACCCCACCCCCCCCCCCCCCCCCCCCCCA
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
780462 CCCC
1 CCCC
780466 TAACCCTAAC
Statistics
Matches: 1705, Mismatches: 248, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 1705 1.00
ACGTcount: A:0.07, C:0.93, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:779858 original size:699 final size:694
Alignment explanation
Indices: 778519--780465 Score: 2888
Period size: 699 Copynumber: 2.7 Consensus size: 694
778509 AAACCCCACC
778519 CCCCCCCCCCCCCCCCCACCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCC-CCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
778584 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCC
65 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
778649 CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCACCCCCCCCCCCCCCCCCCCCACCCCCCCC
130 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCA-CCCCCCCCCCCCCCCCCCCACCCCCCCC
778714 CCCCCCCCCCCCCCCACCCCCCCCCCCCCCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
194 CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
* *
778777 CCCCCCACCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCACCCCCACCCCACCCCCCCCACCCCAC
258 CCCCCC-CCCCCCCCCCCCCCACCCCCCCCCCCCCCCC-CCCCC-CCCC-CCCCCCCCCCCCCCC
* *
778841 CACCCC-CCCCCCCCCCCCCCCACCACACCCCCCCCCCCCCCACCCCCCCCCACCCCCCCCCCCC
319 CACCCCACCCCCCCCCCCCCCCCCCCCA-CCCCCCCCCCCCC-CCCCCCCCCA--CCCCCCCCCC
778905 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
380 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACC
*
778970 CCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCA-CCCCCCCCCCCCCCCCCCCC
445 CCCCCCCCCCCCCCCCCCCACCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCC
779034 CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCC
510 CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCC
779099 ACCCACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCC
575 ACCCACCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCC
*
779164 CCACCCCCACCCCCCACC-CCCCCCACC-CCCCCCCCCCCCCCCCCCCCCCCCCCCA
640 CC-CCCCC-CCCCCCACCACCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCCA
779219 CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
779284 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCC
66 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCC
779349 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCCCCC
130 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCCCCC
779414 CCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
195 CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
*
779479 CCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
259 CCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCC
779544 CACCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCC
324 CACCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCC
779609 CCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCACCCCCCCCCCCCCCCCCCCCCACCCCCCCCC
389 CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCACCCCCCCCC
779674 CCCCCCCCCCCC-CCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCC
452 CCCCCCCCCCCCACCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCC
* * * *
779738 CCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
517 CCCCCCCCCCCCCCCCCCC-CCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCACCCAC
*
779803 CCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCCCCCCC
581 CCCCCCC-CCCCCCCCCCCCCCCACCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCCCCCCC
*
779868 CCCCCCCCCCCAGCCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCCA
645 CCCCCCCCACCA-CCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCCA
* *
779919 CCCCCCCAAACCCCCCCCGCCCAACCCCCCCCCCCCCACCCCCCCCCCCCCCCCAACCCACCCCC
1 CCCCCCC---CCCCCCCCCCCCCA-CCCCCCCCCCCCACCCCCCCCCCCCCCCC--CCC-CCCCC
779984 CACCCCCCGCATAAACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
59 C-CCCCCC-C-----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
**** ** * ****
780049 CCCCCCCCCCCCCCCCCCCCCCTAAACCCTACGCCCTAAACCCCCCCCACCCCCCACCCCCCCCC
117 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCC-CCCCCCCCC
* * * * * *
780114 CCCC-CCCCACACCCCCACCCCCCACCCCCCCCCCCCACCCCCAACACCCCCCCCCCCCCCCCCC
181 CCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCC
* * * *
780178 CCCACCACCCCCCACCACCCCCCCCCCCCCCCACCCCCCCCCCCCACCCACCCACCCCACCCCGC
246 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCC-CCC-CCC-CCCC-CCCC-C
* * * * * * * ** *
780243 CCCCACCCCCACCCACCACACCCCCCCCCCCCCACCCCCCA-CCACACCACCAACACCCCCCCAC
306 CCCCCCCCCCCCCCACCCCACCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCAC
*
780307 CCCCCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCACCCCAAAAACCCCCCCCCCCCCCACCC
371 CCCCCCCCCCCCCCCCCC-CCCCCCCCCC-CCCCCCC-CCCC-----CCCCCCCCCCCCCCCCCC
* * * *
780372 CCCCCCCCCCCCCAACCCCCCCCCACCCCCCCCCCCCACCCAACCACCCCCCCACCCCCCCACCC
428 CCCCCCCCCCCCCCACCCCCCCCC-CCCCCCCCCCCCACCCACCCCCCCCCCCCCCCCCCCACCC
* *
780437 CACCCCCCCCCCCCCCCCCCCCCCACCCC
492 CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
780466 TAACCCTAAC
Statistics
Matches: 1147, Mismatches: 56, Indels: 64
0.91 0.04 0.05
Matches are distributed among these distances:
695 46 0.04
696 28 0.02
697 107 0.09
698 84 0.07
699 226 0.20
700 135 0.12
701 52 0.05
703 12 0.01
704 29 0.03
706 3 0.00
707 6 0.01
708 6 0.01
709 1 0.00
712 82 0.07
713 68 0.06
714 58 0.05
715 4 0.00
716 39 0.03
717 47 0.04
718 7 0.01
719 4 0.00
722 29 0.03
723 17 0.01
724 57 0.05
ACGTcount: A:0.07, C:0.93, G:0.00, T:0.00
Consensus pattern (694 bp):
CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCACCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCA
CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCC
CCCCCCCCACCCACCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCACCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCACCCACCCCCC
CCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCACCCCCCCCCCACCCCCCCCCCCCCCCCCCCC
CCACCACCCCCCACCACCCACCCCCCCCCCCCCCCCCCCCCCCA
Found at i:780471 original size:7 final size:7
Alignment explanation
Indices: 780463--781985 Score: 1397
Period size: 7 Copynumber: 219.4 Consensus size: 7
780453 CCCCCCCCAC
780463 CCCT-AA
1 CCCTAAA
780469 CCCT-AA
1 CCCTAAA
*
780475 CCCTACA
1 CCCTAAA
780482 CCCTAAA
1 CCCTAAA
780489 CCCTAAA
1 CCCTAAA
780496 -CCTAAA
1 CCCTAAA
780502 CCC--AA
1 CCCTAAA
780507 CCCTAAA
1 CCCTAAA
780514 CCCTAAAA
1 CCCT-AAA
780522 CCCTAAA
1 CCCTAAA
780529 CCCTAAA
1 CCCTAAA
780536 CCCTAAA
1 CCCTAAA
780543 CCCTAAA
1 CCCTAAA
780550 CCCTAAA
1 CCCTAAA
*
780557 CACT-AA
1 CCCTAAA
*
780563 -CATAAA
1 CCCTAAA
780569 CCCTAAA
1 CCCTAAA
*
780576 ACCTAAA
1 CCCTAAA
780583 CCCTAAA
1 CCCTAAA
* *
780590 CACGAAA
1 CCCTAAA
*
780597 ACCTAAAA
1 CCCT-AAA
780605 CCCTAAA
1 CCCTAAA
780612 CCACTAAA
1 CC-CTAAA
780620 CCCTAAA
1 CCCTAAA
780627 CCCTAAA
1 CCCTAAA
780634 CCCTAAA
1 CCCTAAA
780641 CCCTAAAA
1 CCCT-AAA
780649 CCCTAAA
1 CCCTAAA
780656 CCCTAAA
1 CCCTAAA
780663 CCCT-AA
1 CCCTAAA
780669 CCCT-AA
1 CCCTAAA
780675 -CCT-AA
1 CCCTAAA
*
780680 CCCGAAA
1 CCCTAAA
780687 CCCTAAA
1 CCCTAAA
780694 CCCTAAA
1 CCCTAAA
780701 CCCTAAAA
1 CCCT-AAA
780709 CCCTAAA
1 CCCTAAA
780716 CCCTAAA
1 CCCTAAA
**
780723 CAAT-AA
1 CCCTAAA
780729 CCCTAAA
1 CCCTAAA
*
780736 ACCTAAA
1 CCCTAAA
780743 CCCTAAA
1 CCCTAAA
780750 CCCTAAA
1 CCCTAAA
*
780757 CACTAAA
1 CCCTAAA
780764 CCCTAAA
1 CCCTAAA
780771 CCCTAAA
1 CCCTAAA
780778 CCCCTAAA
1 -CCCTAAA
780786 CCCT-AA
1 CCCTAAA
780792 CCCTAAA
1 CCCTAAA
780799 CCCT-AA
1 CCCTAAA
780805 CCCT-AA
1 CCCTAAA
780811 CCACTAAA
1 CC-CTAAA
780819 CCCTAAAA
1 CCCT-AAA
*
780827 CCCCAAAA
1 -CCCTAAA
780835 CCC-AAA
1 CCCTAAA
780841 CCCTAAA
1 CCCTAAA
780848 CCCTAAA
1 CCCTAAA
780855 CCCTAAA
1 CCCTAAA
780862 CCC-AAA
1 CCCTAAA
780868 CCCTAAAA
1 CCCT-AAA
780876 CCCTAAA
1 CCCTAAA
780883 -CCTAAA
1 CCCTAAA
780889 CCCTAAA
1 CCCTAAA
*
780896 CCCGAAA
1 CCCTAAA
780903 CCCTAAAA
1 CCCT-AAA
780911 CCCTAAA
1 CCCTAAA
*
780918 -CCGAAA
1 CCCTAAA
780924 CCCTAAA
1 CCCTAAA
780931 --CT-AA
1 CCCTAAA
780935 CCCTAAA
1 CCCTAAA
780942 CCCT-AA
1 CCCTAAA
780948 CCCT-AA
1 CCCTAAA
780954 CCCTAAA
1 CCCTAAA
780961 CCCT-AA
1 CCCTAAA
780967 CCCTAAA
1 CCCTAAA
*
780974 CACTAAA
1 CCCTAAA
780981 CCCT-AA
1 CCCTAAA
780987 CCCTAAA
1 CCCTAAA
780994 -CCTAAAA
1 CCCT-AAA
781001 CCCTAAA
1 CCCTAAA
781008 CCCT-AA
1 CCCTAAA
781014 CCCTAAA
1 CCCTAAA
*
781021 ACCTAAA
1 CCCTAAA
781028 CCCTAAA
1 CCCTAAA
781035 CCCT-AA
1 CCCTAAA
781041 CCCTAAAA
1 CCCT-AAA
781049 CCCTAAA
1 CCCTAAA
781056 CCCTAAA
1 CCCTAAA
781063 CCCTAAAAAA
1 CCCT---AAA
*
781073 CCCGAAAA
1 CCC-TAAA
*
781081 CCCGAAA
1 CCCTAAA
*
781088 -CCGAAA
1 CCCTAAA
*
781094 -CCGAAA
1 CCCTAAA
781100 CCCT-AA
1 CCCTAAA
781106 -CCTAAA
1 CCCTAAA
*
781112 -CCGAAA
1 CCCTAAA
781118 CCCCTAAAA
1 -CCCT-AAA
781127 CCCTAAA
1 CCCTAAA
*
781134 CACTAAA
1 CCCTAAA
781141 GCCCTAAA
1 -CCCTAAA
*
781149 -ACTAAA
1 CCCTAAA
781155 CCCTAAA
1 CCCTAAA
781162 CCCTAAA
1 CCCTAAA
*
781169 CACTAAA
1 CCCTAAA
781176 CCCTAAA
1 CCCTAAA
781183 CCC-AAA
1 CCCTAAA
*
781189 ACCT-AA
1 CCCTAAA
781195 CCCTAAA
1 CCCTAAA
781202 CCCTAAA
1 CCCTAAA
*
781209 CCGTAAA
1 CCCTAAA
781216 CCCTAAA
1 CCCTAAA
781223 CCCTAAA
1 CCCTAAA
*
781230 CACTAAA
1 CCCTAAA
*
781237 CCCTAGA
1 CCCTAAA
781244 CCCTAAA
1 CCCTAAA
781251 CCCT-AA
1 CCCTAAA
781257 CCCTAAA
1 CCCTAAA
781264 CCCTAAA
1 CCCTAAA
781271 CCCTAAA
1 CCCTAAA
781278 CCCTAAA
1 CCCTAAA
*
781285 CCC-GAA
1 CCCTAAA
781291 CCCTAAAAA
1 CCCT--AAA
781300 CCCTAAA
1 CCCTAAA
*
781307 CCCTGAA
1 CCCTAAA
781314 -CCTAAAA
1 CCCT-AAA
*
781321 ACCTAAAA
1 CCCT-AAA
781329 CCCTAAA
1 CCCTAAA
781336 CCCTAAA
1 CCCTAAA
781343 CCCTAAAA
1 CCCT-AAA
781351 CCCTAAA
1 CCCTAAA
781358 CCCTAAA
1 CCCTAAA
781365 CCCTAAAA
1 CCCT-AAA
781373 CCCTAAA
1 CCCTAAA
781380 CCCTAAAA
1 CCCT-AAA
****
781388 AAAAAAA
1 CCCTAAA
781395 CCCATAAA
1 CCC-TAAA
781403 CCCTAAA
1 CCCTAAA
781410 CCCTAAA
1 CCCTAAA
*
781417 -CCGAAA
1 CCCTAAA
781423 CCCTAAAA
1 CCCT-AAA
781431 CCCTAAAAAA
1 CCCT---AAA
781441 CCCTAAA
1 CCCTAAA
781448 CCCTAAA
1 CCCTAAA
781455 CCCTAAA
1 CCCTAAA
781462 -CCTAAAAAA
1 CCCT---AAA
781471 CCCTAAA
1 CCCTAAA
781478 CCCT-AA
1 CCCTAAA
**
781484 CACGAAAA
1 C-CCTAAA
781492 CCCTAAA
1 CCCTAAA
781499 CCCT-AA
1 CCCTAAA
781505 CCCTAAA
1 CCCTAAA
*
781512 -CATAAA
1 CCCTAAA
781518 CCCTAAAAA
1 CCCT--AAA
*
781527 CCATAAA
1 CCCTAAA
781534 CCC-AAA
1 CCCTAAA
781540 CCCT-AA
1 CCCTAAA
*
781546 CCCGAAA
1 CCCTAAA
*
781553 CCCGAAA
1 CCCTAAA
*
781560 CCC-GAA
1 CCCTAAA
781566 CACCTAAAA
1 C-CCT-AAA
781575 CCCTAAA
1 CCCTAAA
781582 CCCTAAA
1 CCCTAAA
781589 -CCTAAA
1 CCCTAAA
781595 CCCTAAA
1 CCCTAAA
781602 CCCTAAA
1 CCCTAAA
781609 CCCTAAA
1 CCCTAAA
781616 -CCTAAA
1 CCCTAAA
781622 -CCTAAA
1 CCCTAAA
781628 CCCT-AA
1 CCCTAAA
781634 CCCTAAA
1 CCCTAAA
*
781641 CCCGAAAAAA
1 CCC---TAAA
781651 CCCT-AA
1 CCCTAAA
781657 CCCTAAA
1 CCCTAAA
781664 CCCTAAA
1 CCCTAAA
781671 CCCT-AA
1 CCCTAAA
**
781677 CCAGAAA
1 CCCTAAA
781684 CCCCT-AA
1 -CCCTAAA
781691 CCCTAAA
1 CCCTAAA
781698 CCC--AA
1 CCCTAAA
781703 CCCTAAA
1 CCCTAAA
781710 CCCTAAA
1 CCCTAAA
781717 CCGC-AAA
1 CC-CTAAA
781724 CCCTAAA
1 CCCTAAA
781731 CCC-AAA
1 CCCTAAA
*
781737 CCCCAAA
1 CCCTAAA
781744 CCC-AAA
1 CCCTAAA
*
781750 CCCCCAAAA
1 --CCCTAAA
*
781759 CCCAAAA
1 CCCTAAA
781766 CCC-AAA
1 CCCTAAA
*
781772 -CCAAAA
1 CCCTAAA
*
781778 CCCAAAA
1 CCCTAAA
*
781785 CCCTGAA
1 CCCTAAA
*
781792 CCC-GAA
1 CCCTAAA
781798 CCCT-AA
1 CCCTAAA
*
781804 CCCT-GA
1 CCCTAAA
*
781810 CCC-GAA
1 CCCTAAA
781816 CCCT--A
1 CCCTAAA
781821 CCCTAACCTA
1 CCCTAA---A
*
781831 CCCTGAA
1 CCCTAAA
*
781838 CCCT-GA
1 CCCTAAA
*
781844 CCCTGAA
1 CCCTAAA
781851 CCCTGAAA
1 CCCT-AAA
*
781859 CCCTGAA
1 CCCTAAA
*
781866 CCCTGAA
1 CCCTAAA
*
781873 CCCT-GA
1 CCCTAAA
781879 CCCTTAAA
1 CCC-TAAA
*
781887 CCCTGAA
1 CCCTAAA
781894 CCCTGAAA
1 CCCT-AAA
*
781902 CCCTTAA
1 CCCTAAA
*
781909 CCCTGAA
1 CCCTAAA
781916 CCCTGAAA
1 CCCT-AAA
*
781924 CCCTGAA
1 CCCTAAA
781931 CCCTAAAA
1 CCCT-AAA
781939 CCCT-AA
1 CCCTAAA
* *
781945 CACAAAA
1 CCCTAAA
*
781952 CCCCAACA
1 CCCTAA-A
781960 CCCCTAAA
1 -CCCTAAA
*
781968 CCCCTAAC
1 -CCCTAAA
781976 CCCTAAA
1 CCCTAAA
781983 CCC
1 CCC
781986 CCACAAAACC
Statistics
Matches: 1291, Mismatches: 109, Indels: 233
0.79 0.07 0.14
Matches are distributed among these distances:
4 2 0.00
5 28 0.02
6 287 0.22
7 732 0.57
8 181 0.14
9 32 0.02
10 29 0.02
ACGTcount: A:0.44, C:0.41, G:0.02, T:0.12
Consensus pattern (7 bp):
CCCTAAA
Found at i:781970 original size:8 final size:8
Alignment explanation
Indices: 781949--781986 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
781939 CCCTAACACA
781949 AAACCCC-
1 AAACCCCT
781956 AACACCCCT
1 AA-ACCCCT
781965 AAACCCCT
1 AAACCCCT
781973 -AACCCCT
1 AAACCCCT
781980 AAACCCC
1 AAACCCC
781987 CACAAAACCC
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
7 9 0.32
8 17 0.61
9 2 0.07
ACGTcount: A:0.37, C:0.55, G:0.00, T:0.08
Consensus pattern (8 bp):
AAACCCCT
Found at i:781983 original size:15 final size:15
Alignment explanation
Indices: 781931--781986 Score: 60
Period size: 15 Copynumber: 3.7 Consensus size: 15
781921 AAACCCTGAA
*
781931 CCCTAAAACCCTAA-
1 CCCTAAACCCCTAAC
* * *
781945 CACAAAACCCCAACAC
1 CCCTAAACCCCTA-AC
781961 CCCTAAACCCCTAAC
1 CCCTAAACCCCTAAC
781976 CCCTAAACCCC
1 CCCTAAACCCC
781987 CACAAAACCC
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
14 9 0.27
15 14 0.42
16 10 0.30
ACGTcount: A:0.39, C:0.52, G:0.00, T:0.09
Consensus pattern (15 bp):
CCCTAAACCCCTAAC
Found at i:782020 original size:26 final size:26
Alignment explanation
Indices: 781985--782069 Score: 98
Period size: 26 Copynumber: 3.2 Consensus size: 26
781975 CCCCTAAACC
781985 CCCACAAAACCCCCACCCCACCCCAAA
1 CCCA-AAAACCCCCACCCCACCCCAAA
** *
782012 CCCCCAAACCCCCAACCCACCCCAAA
1 CCCAAAAACCCCCACCCCACCCCAAA
**
782038 CCCAAAAACCCAAAACCCCAACCCCAAA
1 CCCAAAAACCC-CCACCCC-ACCCCAAA
782066 CCCA
1 CCCA
782070 CCCCGACCCC
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 29 0.60
27 7 0.15
28 12 0.25
ACGTcount: A:0.40, C:0.60, G:0.00, T:0.00
Consensus pattern (26 bp):
CCCAAAAACCCCCACCCCACCCCAAA
Found at i:782050 original size:32 final size:31
Alignment explanation
Indices: 781996--782061 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 31
781986 CCACAAAACC
* ** *
781996 CCCACCCCACCCCAAACCCCCAAACCCCCAA
1 CCCACCCCAACCCAAAAACCCAAAACCCCAA
782027 CCCACCCCAAACCCAAAAACCCAAAACCCCAA
1 CCCACCCC-AACCCAAAAACCCAAAACCCCAA
782059 CCC
1 CCC
782062 CAAACCCACC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
31 8 0.27
32 22 0.73
ACGTcount: A:0.38, C:0.62, G:0.00, T:0.00
Consensus pattern (31 bp):
CCCACCCCAACCCAAAAACCCAAAACCCCAA
Found at i:782098 original size:7 final size:7
Alignment explanation
Indices: 782069--782255 Score: 215
Period size: 7 Copynumber: 27.0 Consensus size: 7
782059 CCCCAAACCC
782069 ACCCCG-
1 ACCCCGA
782075 ACCCCGA
1 ACCCCGA
*
782082 CCCCCG-
1 ACCCCGA
782088 ACCCCGA
1 ACCCCGA
782095 A-CCCGAA
1 ACCCCG-A
*
782102 ACCCCTA
1 ACCCCGA
782109 ACCCCGA
1 ACCCCGA
*
782116 ACCCCTA
1 ACCCCGA
782123 ACCCCGAA
1 ACCCCG-A
782131 ACCCCGA
1 ACCCCGA
*
782138 ACCCTGA
1 ACCCCGA
*
782145 ACCTCGA
1 ACCCCGA
782152 A-CCCGTA
1 ACCCCG-A
*
782159 A-CCCTA
1 ACCCCGA
782165 A-CCCGA
1 ACCCCGA
782171 ACCCCGA
1 ACCCCGA
782178 ACCCCGA
1 ACCCCGA
*
782185 ACGCCGA
1 ACCCCGA
*
782192 ACCCCTA
1 ACCCCGA
782199 ACCCCGA
1 ACCCCGA
782206 ACCCCGA
1 ACCCCGA
782213 ACCCCGA
1 ACCCCGA
782220 ACCCCGA
1 ACCCCGA
*
782227 ACCCCTA
1 ACCCCGA
782234 ACCCCGA
1 ACCCCGA
782241 ACCCCGA
1 ACCCCGA
782248 ACGCCCGA
1 AC-CCCGA
782256 CCCGTAACCC
Statistics
Matches: 155, Mismatches: 18, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
6 25 0.16
7 115 0.74
8 15 0.10
ACGTcount: A:0.28, C:0.55, G:0.13, T:0.04
Consensus pattern (7 bp):
ACCCCGA
Found at i:782329 original size:20 final size:20
Alignment explanation
Indices: 782306--782352 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
782296 CCCGAACCCG
* *
782306 GAACCCGGAACCCTTAACAC
1 GAACCCCGAAACCTTAACAC
* *
782326 GAACCCCTAAACCTTAACCC
1 GAACCCCGAAACCTTAACAC
782346 GAACCCC
1 GAACCCC
782353 CCGAAACCCC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.45, G:0.11, T:0.11
Consensus pattern (20 bp):
GAACCCCGAAACCTTAACAC
Found at i:782586 original size:14 final size:15
Alignment explanation
Indices: 782560--782592 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
782550 CCCGATCCCT
782560 AACCCCAGAACCCAG
1 AACCCCAGAACCCAG
*
782575 AACCCC-GAACCCAT
1 AACCCCAGAACCCAG
782589 AACC
1 AACC
782593 TCAACCCGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.39, C:0.48, G:0.09, T:0.03
Consensus pattern (15 bp):
AACCCCAGAACCCAG
Found at i:782691 original size:7 final size:7
Alignment explanation
Indices: 782654--782705 Score: 50
Period size: 7 Copynumber: 7.3 Consensus size: 7
782644 CCTACCCTAG
*
782654 CCCCAAT
1 CCCCAAA
*
782661 CCCCAAG
1 CCCCAAA
782668 CCCCAAAA
1 CCCC-AAA
*
782676 CCCAAAA
1 CCCCAAA
*
782683 CCCCCAA
1 CCCCAAA
*
782690 CCTCAAA
1 CCCCAAA
782697 CCCCAAA
1 CCCCAAA
782704 CC
1 CC
782706 AGAACCAAAC
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
7 31 0.86
8 5 0.14
ACGTcount: A:0.38, C:0.56, G:0.02, T:0.04
Consensus pattern (7 bp):
CCCCAAA
Found at i:782696 original size:22 final size:23
Alignment explanation
Indices: 782661--782703 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
782651 TAGCCCCAAT
782661 CCCCAAGCCCCAAAACCCAAAAC
1 CCCCAAGCCCCAAAACCCAAAAC
* *
782684 CCCCAA-CCTCAAACCCCAAA
1 CCCCAAGCCCCAAAACCCAAA
782704 CCAGAACCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.42, C:0.53, G:0.02, T:0.02
Consensus pattern (23 bp):
CCCCAAGCCCCAAAACCCAAAAC
Done.