genome.fa.s441.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold441
Parameters: 2 7 7 80 10 50 1000
Length:  135540

Tables:   1   

This is table  1  of  1  ( 111 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2917--2962	11	3.9	11	84	15	65	86	13	0	0	0.56
2919--2979	10	5.6	10	79	12	50	85	9	3	1	0.78
2918--2962	12	3.7	12	88	5	72	88	11	0	0	0.50
2918--2969	1	52.0	1	80	0	50	88	9	1	0	0.59
4196--5137	29	32.9	29	91	2	1396	28	32	17	21	1.96
4196--5137	86	11.0	86	90	3	1411	28	32	17	21	1.96
5663--5737	20	3.8	20	78	0	87	34	13	12	40	1.81
5663--5740	40	2.0	39	87	2	111	34	12	12	39	1.82
6648--6699	22	2.3	23	93	6	97	19	11	9	59	1.59
12770--12850	36	2.3	35	81	10	85	71	9	13	4	1.28
13102--13129	14	2.0	14	100	0	56	85	14	0	0	0.59
14181--14754	27	20.9	27	90	2	833	23	33	13	29	1.93
14181--14754	55	10.5	54	91	1	833	23	33	13	29	1.93
14181--14754	82	7.0	81	90	2	842	23	33	13	29	1.93
14740--15182	32	13.8	32	94	0	726	31	33	18	16	1.93
16424--16459	17	2.1	17	89	0	54	83	0	16	0	0.65
19922--19956	13	2.7	13	90	0	61	31	17	20	31	1.95
24805--24886	21	4.1	20	85	6	112	37	17	12	32	1.86
24805--24886	41	2.0	40	88	6	121	37	17	12	32	1.86
24922--24989	19	3.9	19	78	21	85	35	11	14	38	1.83
24924--24986	32	2.0	32	96	0	117	34	12	15	36	1.86
24943--24967	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25029--25054	13	2.0	13	100	0	52	30	15	15	38	1.88
25009--25075	33	2.0	33	88	0	98	25	14	16	43	1.86
27403--27744	52	6.5	53	70	17	196	29	26	12	32	1.92
27520--27588	27	2.5	27	88	2	93	24	31	21	21	1.98
27408--27743	104	3.2	103	70	13	288	30	25	12	31	1.93
27728--27804	28	2.8	28	87	0	100	23	33	19	23	1.97
27406--27811	212	1.9	212	89	3	629	28	27	13	31	1.94
41373--42270	55	16.3	55	92	3	1411	28	31	20	20	1.97
41513--41600	29	3.1	29	61	26	71	26	35	19	19	1.95
41678--41765	29	3.1	29	61	26	71	26	35	19	19	1.95
42118--42198	26	2.9	29	66	17	71	27	33	18	20	1.96
42135--42225	26	3.4	26	68	14	76	29	32	16	20	1.95
42876--42957	21	4.1	20	84	12	114	39	17	10	32	1.84
42876--42957	41	2.0	40	90	6	130	39	17	10	32	1.84
42993--43060	19	3.9	19	78	21	85	35	11	14	38	1.83
42995--43057	32	2.0	32	96	0	117	34	12	15	36	1.86
43014--43038	13	1.9	13	100	0	50	36	16	16	32	1.90
43080--43146	33	2.0	33	85	0	89	25	16	16	41	1.88
48604--48726	51	2.3	53	84	6	162	33	22	10	33	1.89
48713--48781	27	2.5	27	88	2	93	24	31	21	21	1.98
48999--49039	1	41.0	1	92	0	55	92	0	2	4	0.44
48996--49029	17	2.0	17	100	0	68	82	0	5	11	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49044--49100	21	2.7	21	97	0	105	33	10	19	36	1.86
49155--49223	19	3.9	19	78	21	87	34	11	14	39	1.82
49158--49220	32	2.0	32	96	0	117	34	12	15	36	1.86
49177--49201	13	1.9	13	100	0	50	36	16	16	32	1.90
49263--49288	13	2.0	13	100	0	52	30	15	15	38	1.88
49243--49309	33	2.0	33	88	0	98	25	14	16	43	1.86
51763--51932	52	3.3	51	79	12	186	29	24	12	32	1.93
51916--51992	28	2.8	28	87	0	100	23	33	19	23	1.97
53100--53229	52	2.5	52	82	6	156	29	24	11	34	1.91
53213--53289	28	2.8	28	87	0	100	23	33	19	23	1.97
53164--53368	107	1.9	107	81	5	243	27	27	15	30	1.96
55771--55838	33	2.1	33	89	8	104	32	14	16	36	1.89
55936--55989	15	3.3	15	77	22	63	31	14	16	37	1.89
56341--56379	13	3.0	13	92	0	69	30	15	17	35	1.91
58010--58051	21	2.0	21	90	0	66	45	4	26	23	1.73
60110--60134	13	1.9	13	100	0	50	36	16	16	32	1.90
61887--62023	53	2.6	53	94	1	229	37	19	16	26	1.93
62170--62194	13	1.9	13	100	0	50	32	16	20	32	1.94
62266--62309	20	2.2	20	83	0	52	29	11	18	40	1.85
66285--66316	16	2.0	16	100	0	64	37	12	18	31	1.88
66665--66706	15	2.6	17	88	7	61	38	0	21	40	1.53
67274--67365	10	9.5	10	73	17	63	67	3	27	2	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67274--67365	3	29.7	3	71	25	50	67	3	27	2	1.18
68266--68304	13	3.0	13	92	0	69	35	17	15	30	1.91
68451--68587	53	2.6	53	94	1	238	27	17	17	37	1.92
68575--68629	21	2.7	20	77	5	56	32	14	14	38	1.87
68668--68708	21	2.0	21	85	9	57	39	9	12	39	1.76
73929--73972	11	3.9	11	88	5	61	84	0	15	0	0.63
73929--74000	13	5.7	12	79	11	63	80	0	18	1	0.78
73933--73991	11	5.3	11	82	11	57	77	0	20	1	0.85
80945--81089	20	6.7	20	73	16	110	40	13	17	29	1.87
80993--81089	40	2.4	40	87	3	142	40	13	16	29	1.87
84351--84416	32	2.1	32	83	11	82	75	9	9	6	1.18
85736--86774	27	37.6	28	84	4	873	25	31	14	28	1.95
85728--86588	164	5.2	164	84	3	957	24	30	14	29	1.95
85742--86774	82	12.5	83	81	6	454	26	31	14	28	1.95
86725--86843	32	3.8	32	79	10	115	29	38	15	16	1.89
87972--88037	9	6.7	9	77	19	53	78	1	18	1	0.90
87972--88012	11	3.9	11	90	6	59	80	0	19	0	0.71
91271--91314	14	3.2	14	77	6	54	59	6	4	29	1.44
92189--92226	2	19.0	2	100	0	76	50	0	0	50	1.00
92778--92806	14	2.1	14	100	0	58	37	6	0	55	1.27
93319--93363	20	2.2	21	84	11	58	31	0	0	68	0.89
93451--93493	17	2.3	19	84	11	54	58	0	2	39	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94447--94501	14	3.8	15	73	7	60	40	0	0	60	0.97
94447--94497	15	3.6	14	76	10	50	37	0	0	62	0.95
95235--95298	24	2.6	25	80	12	69	40	0	0	59	0.97
95264--95328	32	1.9	34	84	9	89	46	0	0	53	1.00
100232--100303	21	3.5	20	70	19	58	12	5	4	77	1.08
102563--102600	2	19.0	2	94	0	67	47	0	0	52	1.00
105163--105210	21	2.3	21	78	7	53	29	4	2	64	1.23
110913--110967	12	4.6	12	74	14	51	36	0	0	63	0.95
111500--112366	218	4.1	217	88	4	1189	43	7	9	39	1.64
114221--114260	18	2.3	18	86	4	55	50	0	5	45	1.23
115457--115497	21	2.0	21	85	9	57	36	29	7	26	1.83
117045--117070	13	2.0	13	100	0	52	38	15	15	30	1.88
117023--117090	33	2.1	32	89	8	102	33	16	14	35	1.89
117901--117938	16	2.4	16	86	8	51	39	10	13	36	1.79
118272--118314	2	21.5	2	100	0	86	0	48	0	51	1.00
124431--124497	37	1.9	35	88	11	102	29	25	11	32	1.92
125385--125455	11	6.5	11	75	3	63	81	1	15	1	0.83
125394--125455	13	4.5	13	79	15	63	80	1	16	1	0.87
125385--125452	26	2.7	23	82	12	73	80	1	16	1	0.85
132030--132057	13	2.2	13	100	0	56	39	17	14	28	1.89
132178--132223	21	2.2	20	81	11	58	32	19	4	43	1.71
134607--134658	19	2.7	20	84	6	70	40	17	13	28	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135430--135455	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1

The End!