Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold444
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 554371
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
File 5 of 5
Found at i:506424 original size:2 final size:2
Alignment explanation
Indices: 506411--506448 Score: 67
Period size: 2 Copynumber: 19.0 Consensus size: 2
506401 GCACTGGTAA
*
506411 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
506449 TTTAGCCATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:511694 original size:4 final size:4
Alignment explanation
Indices: 511685--511758 Score: 80
Period size: 4 Copynumber: 19.0 Consensus size: 4
511675 GCAATATATG
* * * * *
511685 CATA CATA CATA C--A CACA CACA CACA CACA CATA CATA CACA CATA
1 CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA CATA
*
511731 CATA CACA CATA CATA CATA CATA CATA
1 CATA CATA CATA CATA CATA CATA CATA
511759 TATATATATA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
2 2 0.03
4 61 0.97
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (4 bp):
CATA
Found at i:511757 original size:12 final size:12
Alignment explanation
Indices: 511685--511758 Score: 98
Period size: 12 Copynumber: 6.3 Consensus size: 12
511675 GCAATATATG
*
511685 CATACATACATA
1 CATACACACATA
*
511697 C--ACACACACA
1 CATACACACATA
*
511707 CACACACACATA
1 CATACACACATA
511719 CATACACACATA
1 CATACACACATA
511731 CATACACACATA
1 CATACACACATA
*
511743 CATACATACATA
1 CATACACACATA
511755 CATA
1 CATA
511759 TATATATATA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
10 8 0.15
12 47 0.85
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (12 bp):
CATACACACATA
Found at i:513560 original size:12 final size:12
Alignment explanation
Indices: 513543--513596 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
513533 CAATTTATAT
513543 TTTTATATATTA
1 TTTTATATATTA
513555 TTTTAT-TATT-
1 TTTTATATATTA
*
513565 TTTT-GATATTA
1 TTTTATATATTA
* *
513576 TATTATATTTTA
1 TTTTATATATTA
*
513588 TATTATATA
1 TTTTATATA
513597 AATTTTAACA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
10 8 0.24
11 7 0.21
12 19 0.56
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (12 bp):
TTTTATATATTA
Found at i:513563 original size:23 final size:24
Alignment explanation
Indices: 513536--513596 Score: 63
Period size: 26 Copynumber: 2.5 Consensus size: 24
513526 ATATCAACAA
*
513536 TTTATATTTT-TA-TATATTATTT
1 TTTATATTTTATATTATATTATAT
*
513558 TATTATTTTTTGATATTATATTATAT
1 T-TTATATTTT-ATATTATATTATAT
*
513584 TTTATATTATATA
1 TTTATATTTTATA
513597 AATTTTAACA
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
22 1 0.03
23 8 0.26
24 3 0.10
25 9 0.29
26 10 0.32
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (24 bp):
TTTATATTTTATATTATATTATAT
Found at i:513564 original size:21 final size:20
Alignment explanation
Indices: 513536--513590 Score: 69
Period size: 21 Copynumber: 2.8 Consensus size: 20
513526 ATATCAACAA
513536 TTTATATTTTTATATATTAT
1 TTTATATTTTTATATATTAT
513556 TTTATTATTTTT-TGATATTAT
1 TTTA-TATTTTTAT-ATATTAT
*
513577 ATTATA-TTTTATAT
1 TTTATATTTTTATAT
513591 TATATAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
19 6 0.19
20 8 0.26
21 17 0.55
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (20 bp):
TTTATATTTTTATATATTAT
Found at i:513574 original size:18 final size:17
Alignment explanation
Indices: 513536--513595 Score: 65
Period size: 15 Copynumber: 3.7 Consensus size: 17
513526 ATATCAACAA
513536 TTTATATT-T-TTATAT
1 TTTATATTATATTATAT
* *
513551 ATTAT-TT-TATTATTT
1 TTTATATTATATTATAT
513566 TTTGATATTATATTATAT
1 TTT-ATATTATATTATAT
513584 TTTATATTATAT
1 TTTATATTATAT
513596 AAATTTTAAC
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
14 3 0.08
15 11 0.30
16 2 0.05
17 11 0.30
18 10 0.27
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTATATTATATTATAT
Found at i:516460 original size:2 final size:2
Alignment explanation
Indices: 516453--516480 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
516443 AATAAAACAA
516453 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
516481 GTGTGTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:517544 original size:16 final size:17
Alignment explanation
Indices: 517509--517554 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 17
517499 ACCTAAAAAC
*
517509 AAATTAAAAAATTACTTA
1 AAATT-AAAAATAACTTA
517527 AAATTAAAAATAAC-TA
1 AAATTAAAAATAACTTA
517543 AAA-T-AAAATAAC
1 AAATTAAAAATAAC
517555 CCTCAAACCT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 8 0.30
15 1 0.04
16 5 0.19
17 8 0.30
18 5 0.19
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (17 bp):
AAATTAAAAATAACTTA
Found at i:518723 original size:2 final size:2
Alignment explanation
Indices: 518716--518749 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
518706 TGTTAAGCTT
518716 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
518750 ATTAGATAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:521459 original size:57 final size:56
Alignment explanation
Indices: 521262--521470 Score: 305
Period size: 56 Copynumber: 3.7 Consensus size: 56
521252 TATTTTTAGG
* *
521262 TTTTTC-CACATTCATTGGTAAAATAACTCGAACCCCTTAGTTTATTTTTAAGTTT
1 TTTTTCACATATTCATTGGTAAAATAACTCGAACCCATTAGTTTATTTTTAAGTTT
* * * *
521317 TTTTTCACATATTTATCGGTAAAATAAATCGAACTCATTAGTTTATTTTTAAGTTT
1 TTTTTCACATATTCATTGGTAAAATAACTCGAACCCATTAGTTTATTTTTAAGTTT
* *
521373 TTTTTCACATATTCGTTGGTAAAATAACTCGAACTCATTAGTTTATTTTTAAGTTTT
1 TTTTTCACATATTCATTGGTAAAATAACTCGAACCCATTAGTTTATTTTTAAG-TTT
*
521430 TTTTTCACATATTCATTGGTAAGAA-AACTCGAGCCCATTAG
1 TTTTTCACATATTCATTGGTAA-AATAACTCGAACCCATTAG
521471 GTTCTGATTC
Statistics
Matches: 138, Mismatches: 13, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
55 6 0.04
56 92 0.67
57 38 0.28
58 2 0.01
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.45
Consensus pattern (56 bp):
TTTTTCACATATTCATTGGTAAAATAACTCGAACCCATTAGTTTATTTTTAAGTTT
Found at i:521945 original size:2 final size:2
Alignment explanation
Indices: 521940--521975 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
521930 TGTGTCAAAC
521940 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
521976 TCAATTTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:525092 original size:2 final size:2
Alignment explanation
Indices: 525085--525117 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
525075 TTTCTTTCTT
525085 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
525118 TCTTCTTTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:533352 original size:23 final size:25
Alignment explanation
Indices: 533312--533358 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
533302 ACGAGTTTTA
*
533312 AAAAATTTTAAATTAAAAT-AAATT
1 AAAAATTTTAAATAAAAATCAAATT
*
533336 AAAATTTTTAAA-AAAAATCAAAT
1 AAAAATTTTAAATAAAAATCAAAT
533359 GATTAAACTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (25 bp):
AAAAATTTTAAATAAAAATCAAATT
Found at i:534716 original size:2 final size:2
Alignment explanation
Indices: 534709--534754 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
534699 TAAAGGCAAA
534709 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
534751 AT AT
1 AT AT
534755 TCAGGTGGTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:539125 original size:19 final size:19
Alignment explanation
Indices: 539098--539136 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
539088 ACCTGTGTCC
539098 AGTGCATTTTCTGATATGG
1 AGTGCATTTTCTGATATGG
* *
539117 AGTGTATTTTTTGATATGG
1 AGTGCATTTTCTGATATGG
539136 A
1 A
539137 TATAGAGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.23, C:0.05, G:0.26, T:0.46
Consensus pattern (19 bp):
AGTGCATTTTCTGATATGG
Found at i:539174 original size:15 final size:15
Alignment explanation
Indices: 539154--539186 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
539144 ATATGATCCT
539154 ATAAGGATCATTCAA
1 ATAAGGATCATTCAA
539169 ATAAGGATCATTCAA
1 ATAAGGATCATTCAA
539184 ATA
1 ATA
539187 TACGGAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.27
Consensus pattern (15 bp):
ATAAGGATCATTCAA
Found at i:542167 original size:86 final size:86
Alignment explanation
Indices: 542015--542199 Score: 264
Period size: 86 Copynumber: 2.2 Consensus size: 86
542005 AAGGCTGATA
* * * *
542015 TTTCC-CCTAATTCAACTCAAACTAAATCAACTCAACCGAATTAAGCTTGAACACCCAAACATTT
1 TTTCCTCC-AATTCAACTCAAACTAAATCAACTCAACCAAACTAAACTTGAACACCCAAACAGTT
542079 GGAAGTGACTAAATCAATCCTT
65 GGAAGTGACTAAATCAATCCTT
* * * * **
542101 TTTCCTCCAATTCAACTCAAGCTCAATCCACTCAACTAAACTAAACTTGAACACCCAAGTAGTTG
1 TTTCCTCCAATTCAACTCAAACTAAATCAACTCAACCAAACTAAACTTGAACACCCAAACAGTTG
542166 GAAGTGACTAAATCAATCCTT
66 GAAGTGACTAAATCAATCCTT
542187 TTTCCTCCAATTC
1 TTTCCTCCAATTC
542200 GAACACCCAA
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
86 86 0.98
87 2 0.02
ACGTcount: A:0.36, C:0.28, G:0.08, T:0.28
Consensus pattern (86 bp):
TTTCCTCCAATTCAACTCAAACTAAATCAACTCAACCAAACTAAACTTGAACACCCAAACAGTTG
GAAGTGACTAAATCAATCCTT
Found at i:542207 original size:51 final size:51
Alignment explanation
Indices: 542149--542250 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
542139 AACTAAACTT
* *
542149 GAACACCCAAGTAGTTGGAAGTGACTAAATCAATCCTTTTTCCTCCAATTC
1 GAACACCCAAGTAGTTAGAAGTGACTAAATCAATCCTTTTTCCCCCAATTC
* *
542200 GAACACCCAAGTAGTTAGAAGTGACTACATCAGTCCTTTTTCCCCCAATTC
1 GAACACCCAAGTAGTTAGAAGTGACTAAATCAATCCTTTTTCCCCCAATTC
542251 AACTCAAAGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.28
Consensus pattern (51 bp):
GAACACCCAAGTAGTTAGAAGTGACTAAATCAATCCTTTTTCCCCCAATTC
Found at i:543065 original size:3 final size:3
Alignment explanation
Indices: 543057--543100 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
543047 AGCGATCACC
543057 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA -AA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
543101 ACGCCGGTAG
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 2 0.05
3 38 0.95
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:543440 original size:30 final size:31
Alignment explanation
Indices: 543404--543505 Score: 111
Period size: 30 Copynumber: 3.4 Consensus size: 31
543394 ATTAATAATT
543404 AATAAATTTTTAATTTTTAAATTT-TATTTA
1 AATAAATTTTTAATTTTTAAATTTATATTTA
* * *
543434 AATAAATTATTGATATTT-AATTTATATTTA
1 AATAAATTTTTAATTTTTAAATTTATATTTA
* * * *
543464 TATAAA-TTTAAAATTTAAAATTTATATTTA
1 AATAAATTTTTAATTTTTAAATTTATATTTA
543494 AATAAATATTTT
1 AATAAAT-TTTT
543506 TTATATAATA
Statistics
Matches: 56, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
29 10 0.18
30 43 0.77
32 3 0.05
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
AATAAATTTTTAATTTTTAAATTTATATTTA
Found at i:543520 original size:20 final size:21
Alignment explanation
Indices: 543484--543540 Score: 71
Period size: 21 Copynumber: 2.7 Consensus size: 21
543474 AAATTTAAAA
*
543484 TTTATATTTAAATAAATAT-TT
1 TTTATA-TAAAATAAATATATT
*
543505 TTTATATAATATAAATATATT
1 TTTATATAAAATAAATATATT
*
543526 TTTATTTAAAATAAA
1 TTTATATAAAATAAA
543541 ATTAATAATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.32
21 21 0.68
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (21 bp):
TTTATATAAAATAAATATATT
Found at i:543547 original size:26 final size:26
Alignment explanation
Indices: 543518--543612 Score: 69
Period size: 26 Copynumber: 3.8 Consensus size: 26
543508 ATATAATATA
*
543518 AATATATTTTTATTTAAAATAAAATT
1 AATATATATTTATTTAAAATAAAATT
* * *
543544 AATA-ATAATTTATTT-AAGTATAATA
1 AATATAT-ATTTATTTAAAATAAAATT
*
543569 AATATACAATTTATTTAAAA-AATAATT
1 AATATA-TATTTATTTAAAATAA-AATT
543596 --TA-ATATTT-TTTAAAATA
1 AATATATATTTATTTAAAATA
543613 TTTTAATTTT
Statistics
Matches: 54, Mismatches: 9, Indels: 15
0.69 0.12 0.19
Matches are distributed among these distances:
22 7 0.13
23 5 0.09
24 1 0.02
25 15 0.28
26 21 0.39
27 5 0.09
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.46
Consensus pattern (26 bp):
AATATATATTTATTTAAAATAAAATT
Found at i:543628 original size:20 final size:20
Alignment explanation
Indices: 543587--543628 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
543577 ATTTATTTAA
*
543587 AAAATAATTTAATATTTTTT
1 AAAATAATTTAATATTTATT
*
543607 AAAATATTTTAAT-TTTAATT
1 AAAATAATTTAATATTT-ATT
543627 AA
1 AA
543629 TTAAGAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AAAATAATTTAATATTTATT
Found at i:545392 original size:2 final size:2
Alignment explanation
Indices: 545385--545415 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
545375 AGATTATAAA
545385 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
545416 AACATTATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:549057 original size:21 final size:21
Alignment explanation
Indices: 549033--549076 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
549023 GAATATTAAA
549033 AGTATGTTGATGACTCTTGTT
1 AGTATGTTGATGACTCTTGTT
549054 AGTATGTTGATGACTCTTGTT
1 AGTATGTTGATGACTCTTGTT
549075 AG
1 AG
549077 CGTGCTAATG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.20, C:0.09, G:0.25, T:0.45
Consensus pattern (21 bp):
AGTATGTTGATGACTCTTGTT
Found at i:551688 original size:24 final size:26
Alignment explanation
Indices: 551660--551708 Score: 84
Period size: 24 Copynumber: 2.0 Consensus size: 26
551650 CTAAATTTTG
551660 TAGGAGTGTG-TTTA-TTTTTAAATA
1 TAGGAGTGTGTTTTATTTTTTAAATA
551684 TAGGAGTGTGTTTTATTTTTTAAAT
1 TAGGAGTGTGTTTTATTTTTTAAAT
551709 TAGATTTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 10 0.43
25 4 0.17
26 9 0.39
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (26 bp):
TAGGAGTGTGTTTTATTTTTTAAATA
Found at i:551981 original size:2 final size:2
Alignment explanation
Indices: 551974--552002 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
551964 TGATATGATC
551974 TA TA TA TA TA TA T- TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
552003 ATAGCACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:551990 original size:13 final size:13
Alignment explanation
Indices: 551974--551999 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
551964 TGATATGATC
551974 TATATATATATAT
1 TATATATATATAT
551987 TATATATATATAT
1 TATATATATATAT
552000 ATAATAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATATAT
Done.