Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3567220
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 13 of 22
Found at i:2010956 original size:21 final size:21
Alignment explanation
Indices: 2010931--2011033 Score: 88
Period size: 21 Copynumber: 4.9 Consensus size: 21
2010921 TTTTATTAGT
2010931 TAACTCA-TCATTTTCATTTTGC
1 TAACTCATTCATTTTC-TTTT-C
2010953 -AACTCATTTC-TTTTCTTTTC
1 TAACTCA-TTCATTTTCTTTTC
**
2010973 TAACTCATTCATTTTCTCCTC
1 TAACTCATTCATTTTCTTTTC
*
2010994 TAATTCACTT-ATTTTCTTTTC
1 TAACTCA-TTCATTTTCTTTTC
* * *
2011015 TAATTCATTTAATTTCTTT
1 TAACTCATTCATTTTCTTT
2011034 CAAGAATATT
Statistics
Matches: 69, Mismatches: 6, Indels: 13
0.78 0.07 0.15
Matches are distributed among these distances:
20 6 0.09
21 54 0.78
22 7 0.10
23 2 0.03
ACGTcount: A:0.20, C:0.22, G:0.01, T:0.56
Consensus pattern (21 bp):
TAACTCATTCATTTTCTTTTC
Found at i:2012641 original size:33 final size:33
Alignment explanation
Indices: 2012604--2012670 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2012594 TTCAATGATT
2012604 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
2012637 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
2012670 T
1 T
2012671 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:2012642 original size:13 final size:13
Alignment explanation
Indices: 2012624--2012648 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2012614 CATAAAATGT
2012624 TGTATCGATACAA
1 TGTATCGATACAA
2012637 TGTATCGATACA
1 TGTATCGATACA
2012649 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2012729 original size:13 final size:13
Alignment explanation
Indices: 2012711--2012735 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2012701 ATTACTCAAA
2012711 TGTATCGATACAT
1 TGTATCGATACAT
2012724 TGTATCGATACA
1 TGTATCGATACA
2012736 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2012837 original size:52 final size:52
Alignment explanation
Indices: 2012744--2012871 Score: 224
Period size: 52 Copynumber: 2.5 Consensus size: 52
2012734 CACTGATCTT
*
2012744 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATT-AAA
2012795 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
2012847 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2012872 TCATATTTCG
Statistics
Matches: 74, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
51 19 0.26
52 52 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
Found at i:2016819 original size:52 final size:52
Alignment explanation
Indices: 2016718--2016823 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 52
2016708 GTTGGACTCA
* *
2016718 ATGTATCTATACTATTCATAATGTATCGATACATGAACAATAATGAATAGTG
1 ATGTATCGATACTATTCATAATGTATCGATACATGAACAATAATAAATAGTG
* * *
2016770 ATGTATCGATACTATTCATAATGTATCGATACATGAATAGTGATAAATAGTG
1 ATGTATCGATACTATTCATAATGTATCGATACATGAACAATAATAAATAGTG
2016822 AT
1 AT
2016824 AAACAATGAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (52 bp):
ATGTATCGATACTATTCATAATGTATCGATACATGAACAATAATAAATAGTG
Found at i:2017475 original size:13 final size:13
Alignment explanation
Indices: 2017457--2017487 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
2017447 ACTTTTCACT
2017457 ATGTATCGATACA
1 ATGTATCGATACA
*
2017470 ATGTATGGATACA
1 ATGTATCGATACA
2017483 ATGTA
1 ATGTA
2017488 CCATATATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.39, C:0.10, G:0.19, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2022291 original size:19 final size:19
Alignment explanation
Indices: 2022248--2022317 Score: 86
Period size: 20 Copynumber: 3.6 Consensus size: 19
2022238 CTGCCAGTTT
*
2022248 CATGTATCGATACAATTGTA
1 CATGTATCGATACAA-TGAA
2022268 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
* *
2022287 CATGTATTGATACAAAGCAA
1 CATGTATCGATACAATG-AA
*
2022307 AATGTATCGAT
1 CATGTATCGAT
2022318 TTTTCTGAAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
19 18 0.41
20 26 0.59
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:2024607 original size:20 final size:21
Alignment explanation
Indices: 2024577--2024615 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
2024567 CATTTTGTTT
2024577 GATGATTTTGATGAAAAATGA
1 GATGATTTTGATGAAAAATGA
*
2024598 GATG-TTTTGATGTAAAAT
1 GATGATTTTGATGAAAAAT
2024616 TCATGAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (21 bp):
GATGATTTTGATGAAAAATGA
Found at i:2030723 original size:23 final size:23
Alignment explanation
Indices: 2030697--2030755 Score: 100
Period size: 23 Copynumber: 2.6 Consensus size: 23
2030687 AATACTTTGA
*
2030697 TCTCTTGATGTTTCTTGAGTGAT
1 TCTCTTCATGTTTCTTGAGTGAT
2030720 TCTCTTCATGTTTCTTGAGTGAT
1 TCTCTTCATGTTTCTTGAGTGAT
*
2030743 TCTCTTCAAGTTT
1 TCTCTTCATGTTT
2030756 AACTATTGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.14, C:0.17, G:0.17, T:0.53
Consensus pattern (23 bp):
TCTCTTCATGTTTCTTGAGTGAT
Found at i:2030984 original size:13 final size:13
Alignment explanation
Indices: 2030963--2030996 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
2030953 CGATACAAAT
2030963 TATAATGTATCGA
1 TATAATGTATCGA
*
2030976 TATATTGTATCGA
1 TATAATGTATCGA
*
2030989 TACAATGT
1 TATAATGT
2030997 GCCATGTATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.35, C:0.09, G:0.15, T:0.41
Consensus pattern (13 bp):
TATAATGTATCGA
Found at i:2032299 original size:6 final size:6
Alignment explanation
Indices: 2032254--2032296 Score: 61
Period size: 6 Copynumber: 7.2 Consensus size: 6
2032244 CAAAACATCC
*
2032254 AAAATT AAAA-G AAAATT AAAATT AAAATT AAAATT AATAATT A
1 AAAATT AAAATT AAAATT AAAATT AAAATT AAAATT AA-AATT A
2032297 TAAACAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
5 4 0.12
6 24 0.73
7 5 0.15
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (6 bp):
AAAATT
Found at i:2032305 original size:19 final size:17
Alignment explanation
Indices: 2032254--2032307 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 17
2032244 CAAAACATCC
*
2032254 AAAATTAAAAGAAAATT
1 AAAATTAAAACAAAATT
*
2032271 AAAATTAAAATTAAAATT
1 AAAATTAAAA-CAAAATT
2032289 AATAATTATAAACAAAATT
1 AA-AATTA-AAACAAAATT
2032308 TTTAAAGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 10 0.31
18 8 0.25
19 11 0.34
20 3 0.09
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.30
Consensus pattern (17 bp):
AAAATTAAAACAAAATT
Found at i:2032307 original size:12 final size:12
Alignment explanation
Indices: 2032253--2032307 Score: 51
Period size: 12 Copynumber: 4.6 Consensus size: 12
2032243 ACAAAACATC
2032253 CAAAATTAAAA-
1 CAAAATTAAAAT
*
2032264 GAAAATTAAAAT
1 CAAAATTAAAAT
*
2032276 TAAAATTAAAAT
1 CAAAATTAAAAT
*
2032288 TAATAATTATAAA-
1 CAA-AATTA-AAAT
2032301 CAAAATT
1 CAAAATT
2032308 TTTAAAGATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
11 10 0.26
12 18 0.47
13 7 0.18
14 3 0.08
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (12 bp):
CAAAATTAAAAT
Found at i:2033953 original size:40 final size:40
Alignment explanation
Indices: 2033865--2033941 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
2033855 ATGGATGAAA
* * **
2033865 AAGGGTTGATCGAGATGAAGTTGACAAGTCAACAAATGAG
1 AAGGGTTGACCAAGATGAAACTGACAAGTCAACAAATGAG
2033905 AAGGGTTGACCAAGATGAAACTGACAAGTCAACAAAT
1 AAGGGTTGACCAAGATGAAACTGACAAGTCAACAAAT
2033942 AGTGTTGGTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.43, C:0.13, G:0.26, T:0.18
Consensus pattern (40 bp):
AAGGGTTGACCAAGATGAAACTGACAAGTCAACAAATGAG
Found at i:2033971 original size:40 final size:41
Alignment explanation
Indices: 2033948--2034515 Score: 170
Period size: 40 Copynumber: 14.1 Consensus size: 41
2033938 AAATAGTGTT
*
2033948 GGTTGATTGGGACAAAATCGACAAGTCAACTAAGAGTAAAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
* * ** *
2033989 GGTTGATTGGGATAAAATCGACAAGTCAATAACTA-AAAAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
*** * * * *
2034029 GGTTGATCAAGAC-AAACCGACAAGTCAATAATGACT-AAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
**** * * *
2034068 GGTTGACCAAGACAAAATTGACAACTTAACAAAGAGT-AAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
* * * * * * *
2034108 GGTTGACTAGGATAAACT-AACAAGTTAACAATGAGTAAAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
*** * * * * *
2034148 GGTTGA-CCAGATAAAA-CTAATAAGTTAACTAAGAAG-AAAA
1 GGTTGATTGGGACAAAATC-GACAAGTCAACAAAG-AGTAAAA
**** ** * * *
2034188 GGTTGGCCAGGACAAAATTAACAAGTTAACAAATGA--CAAG
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAA-GAGTAAAA
* * * *
2034228 GGTTGATCGGGATGAAAAT-GACAAGTTC-ACAAATAAT-AAA
1 GGTTGATTGGGA-CAAAATCGACAAG-TCAACAAAGAGTAAAA
* * * * *
2034268 GGTTGACTGGGACAAAA-CCATCAAGTCAACTAGGAATAAAA
1 GGTTGATTGGGACAAAATCGA-CAAGTCAACAAAGAGTAAAA
* * * * *
2034309 GGTTGACTGGGACAAAA-CCATCAAGTCAACTAGGAATAAAA
1 GGTTGATTGGGACAAAATCGA-CAAGTCAACAAAGAGTAAAA
* * * * * *
2034350 GGTTGACCT-AGACAAAATTGACAAATCAACAATTG-G-GAAA
1 GGTTGA-TTGGGACAAAATCGACAAGTCAACAA-AGAGTAAAA
* ** * * *
2034390 GCTTGGCTGGGACAAAATCAACAAGTCAACAATGAGT-AGA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
* * * * *
2034430 GGTTGACTAGGATAAAAT-AACAAGTCAACAAA-AGGAAAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
**** * * *
2034469 GGTTGACCAAGATAAAATCGACAAGTCAACTAAGAATAAAA
1 GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
2034510 GGTTGA
1 GGTTGA
2034516 CCAAGATAAA
Statistics
Matches: 413, Mismatches: 88, Indels: 52
0.75 0.16 0.09
Matches are distributed among these distances:
38 2 0.00
39 97 0.23
40 174 0.42
41 135 0.33
42 5 0.01
ACGTcount: A:0.46, C:0.14, G:0.21, T:0.19
Consensus pattern (41 bp):
GGTTGATTGGGACAAAATCGACAAGTCAACAAAGAGTAAAA
Found at i:2033999 original size:41 final size:41
Alignment explanation
Indices: 2033948--2034580 Score: 271
Period size: 41 Copynumber: 15.7 Consensus size: 41
2033938 AAATAGTGTT
* *
2033948 GGTTGATTGGGACAAAATCGACAAGTCAACTAAGAGTAAAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
* * * * *
2033989 GGTTGATTGGGATAAAATCGACAAGTCAA-TAACTA-AAAAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAA-GAGTAAAA
* * *
2034029 GGTTGA-TCAAGAC-AAACCGACAAGTCAA-TAATGACT-AAA
1 GGTTGACT-AGGACAAAATCGACAAGTCAACTAA-GAGTAAAA
* * * * * *
2034068 GGTTGACCAAGACAAAATTGACAACTTAACAAAGAGT-AAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
* * * *
2034108 GGTTGACTAGGATAAACT-AACAAGTTAAC-AATGAGTAAAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAA-GAGTAAAA
* * * * *
2034148 GGTTGACCA-GATAAAA-CTAATAAGTTAACTAAGAAG-AAAA
1 GGTTGACTAGGACAAAATC-GACAAGTCAACTAAG-AGTAAAA
* * ** * *
2034188 GGTTGGCCAGGACAAAATTAACAAGTTAAC-AA-A-TGACAAG
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGT-A-AAA
* * * * *
2034228 GGTTGA-TCGGGATGAAAAT-GACAAGTTC-ACAAATAAT-AAA
1 GGTTGACT-AGGA-CAAAATCGACAAG-TCAACTAAGAGTAAAA
* * * *
2034268 GGTTGACTGGGACAAAA-CCATCAAGTCAACTAGGAATAAAA
1 GGTTGACTAGGACAAAATCGA-CAAGTCAACTAAGAGTAAAA
* * * *
2034309 GGTTGACTGGGACAAAA-CCATCAAGTCAACTAGGAATAAAA
1 GGTTGACTAGGACAAAATCGA-CAAGTCAACTAAGAGTAAAA
* * ** **
2034350 GGTTGACCTA-GACAAAATTGACAAATCAAC-AATTGGGAAA
1 GGTTGA-CTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
* * * * *
2034390 GCTTGGCTGGGACAAAATCAACAAGTCAAC-AATGAGT-AGA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAA-GAGTAAAA
* * * *
2034430 GGTTGACTAGGATAAAAT-AACAAGTCAAC-AAAAGGAAAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
* * * *
2034469 GGTTGACCAAGATAAAATCGACAAGTCAACTAAGAATAAAA
1 GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
* * * * *
2034510 GGTTGACCAAGATAAAA-CTGATAAGTCAACTAAGAATAAAA
1 GGTTGACTAGGACAAAATC-GACAAGTCAACTAAGAGTAAAA
* * *
2034551 GGTTGACCAAGATAAAA-CTGACAAGTCAAC
1 GGTTGACTAGGACAAAATC-GACAAGTCAAC
2034581 AAATGAAAAG
Statistics
Matches: 478, Mismatches: 78, Indels: 72
0.76 0.12 0.11
Matches are distributed among these distances:
38 5 0.01
39 93 0.19
40 175 0.37
41 200 0.42
42 4 0.01
43 1 0.00
ACGTcount: A:0.47, C:0.14, G:0.20, T:0.19
Consensus pattern (41 bp):
GGTTGACTAGGACAAAATCGACAAGTCAACTAAGAGTAAAA
Found at i:2034058 original size:39 final size:39
Alignment explanation
Indices: 2034007--2034083 Score: 111
Period size: 39 Copynumber: 2.0 Consensus size: 39
2033997 GGGATAAAAT
*
2034007 CGACAAGTCAATAACT-AAAAAAGGTTGATCAAGACAAAC
1 CGACAAGTCAATAA-TGAAAAAAGGTTGACCAAGACAAAC
**
2034046 CGACAAGTCAATAATGACTAAAGGTTGACCAAGACAAA
1 CGACAAGTCAATAATGAAAAAAGGTTGACCAAGACAAA
2034084 ATTGACAACT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
38 1 0.03
39 33 0.97
ACGTcount: A:0.49, C:0.18, G:0.17, T:0.16
Consensus pattern (39 bp):
CGACAAGTCAATAATGAAAAAAGGTTGACCAAGACAAAC
Found at i:2034176 original size:79 final size:81
Alignment explanation
Indices: 2034025--2034233 Score: 194
Period size: 79 Copynumber: 2.6 Consensus size: 81
2034015 CAATAACTAA
* * ** * * * *
2034025 AAAAGGTTGATCAAGAC-AAACCGACAAGTCAATAATGACTAAAGGTTGACCAAGACAAAATTGA
1 AAAAGGTTGACCAGGACAAAACTAACAAGTTAACAATGACTAAAGGTTGACCAAGACAAAACTAA
2034089 CAACTTAACAAAG-AG
66 CAACTTAACAAAGAAG
* * * * *
2034104 TAAAGGTTGACTAGGA-TAAACTAACAAGTTAACAATGAGTAAAAGGTTGACC-AGATAAAACTA
1 AAAAGGTTGACCAGGACAAAACTAACAAGTTAACAATGACT-AAAGGTTGACCAAGACAAAACTA
* * *
2034167 ATAAGTTAACTAAGAAG
65 ACAACTTAACAAAGAAG
* * *
2034184 AAAAGGTTGGCCAGGACAAAATTAACAAGTTAACAAATGAC-AAGGGTTGA
1 AAAAGGTTGACCAGGACAAAACTAACAAGTTAAC-AATGACTAAAGGTTGA
2034234 TCGGGATGAA
Statistics
Matches: 103, Mismatches: 22, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
79 49 0.48
80 34 0.33
81 15 0.15
82 5 0.05
ACGTcount: A:0.48, C:0.13, G:0.20, T:0.19
Consensus pattern (81 bp):
AAAAGGTTGACCAGGACAAAACTAACAAGTTAACAATGACTAAAGGTTGACCAAGACAAAACTAA
CAACTTAACAAAGAAG
Found at i:2034466 original size:122 final size:119
Alignment explanation
Indices: 2034265--2034498 Score: 256
Period size: 122 Copynumber: 1.9 Consensus size: 119
2034255 CACAAATAAT
* * * * *
2034265 AAAGGTTGACTGGGACAAAACCATCAAGTCAACTAGGAATAAAAGGTTGACTGGGACAAAACCAT
1 AAAGCTTGACTGGGACAAAACCAACAAGTCAACAAGGAATAAAAGGTTGACTAGGACAAAACCAA
* * *
2034330 CAAGTCAACTAGGAATAAAAGGTTGACCTAGACAAAATTGACAAATCAACAATTGGG
66 CAAGTCAACAAGG---AAAAGGTTGACCAAGACAAAATCGACAAATCAACAATTGGG
* * * * * * *
2034387 AAAGCTTGGCTGGGACAAAATCAACAAGTCAACAATGAGT-AGAGGTTGACTAGGATAAAA-TAA
1 AAAGCTTGACTGGGACAAAACCAACAAGTCAACAAGGAATAAAAGGTTGACTAGGACAAAACCAA
* *
2034450 CAAGTCAACAAAAGGAAAAGGTTGACCAAGATAAAATCGACAAGTCAAC
66 CAAGTCAAC--AAGGAAAAGGTTGACCAAGACAAAATCGACAAATCAAC
2034499 TAAGAATAAA
Statistics
Matches: 93, Mismatches: 17, Indels: 7
0.79 0.15 0.06
Matches are distributed among these distances:
119 30 0.32
120 10 0.11
121 17 0.18
122 36 0.39
ACGTcount: A:0.46, C:0.16, G:0.21, T:0.17
Consensus pattern (119 bp):
AAAGCTTGACTGGGACAAAACCAACAAGTCAACAAGGAATAAAAGGTTGACTAGGACAAAACCAA
CAAGTCAACAAGGAAAAGGTTGACCAAGACAAAATCGACAAATCAACAATTGGG
Found at i:2034609 original size:82 final size:81
Alignment explanation
Indices: 2033958--2034637 Score: 252
Period size: 81 Copynumber: 8.4 Consensus size: 81
2033948 GGTTGATTGG
* **** * **
2033958 GACAAAATCGACAAGTCAACTAAGAGTAAAAGGTTGATTGGGATAAAATCGACAAGTCAATAACT
1 GACAAAA-CGACAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAATCGACAAGTCAACAAAG
* *
2034023 AA-AAAAGGTTGATCAA
65 AATAAAAGGTTAACCAA
* * * * * *
2034039 GACAAACCGACAAGTCAA-TAATGACT-AAAGGTTGACCAAGACAAAATTGACAACTTAACAAAG
1 GACAAAACGACAAGTCAACTAA-GAATAAAAGGTTGACCAAGATAAAATCGACAAGTCAACAAAG
* * * *
2034102 AGT-AAAGGTTGACTAG
65 AATAAAAGGTTAACCAA
* * * * * * * *
2034118 GA-TAAACTAACAAGTTAAC-AATGAGTAAAAGGTTGACC-AGATAAAA-CTAATAAGTTAACTA
1 GACAAAAC-GACAAGTCAACTAA-GAATAAAAGGTTGACCAAGATAAAATC-GACAAGTCAACAA
* ** *
2034179 AGAAGAAAAGGTTGGCCAG
63 AGAATAAAAGGTTAACCAA
** * * * **
2034198 GACAAAATTAACAAGTTAAC--A-AATGACAAGGGTTGATCGGGATGAAAAT-GACAAGTTC-AC
1 GACAAAA-CGACAAGTCAACTAAGAAT-A-AAAGGTTGACCAAGAT-AAAATCGACAAG-TCAAC
* * ***
2034258 AAATAAT-AAAGGTTGACTGG
61 AAAGAATAAAAGGTTAACCAA
* * *** * * * *
2034278 GACAAAACCATCAAGTCAACTAGGAATAAAAGGTTGACTGGGACAAAA-CCATCAAGTCAACTAG
1 GACAAAACGA-CAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAATCGA-CAAGTCAACAAA
* *
2034342 GAATAAAAGGTTGACCTA
64 GAATAAAAGGTTAACCAA
* * ***** * * *** * * *
2034360 GACAAAATTGACAAATCAAC-AATTGGGAAAGCTTGGCTGGGACAAAATCAACAAGTCAACAATG
1 GACAAAA-CGACAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAATCGACAAGTCAACAAAG
* * * * *
2034424 AGT-AGAGGTTGACTAG
65 AATAAAAGGTTAACCAA
* ** * *
2034440 GATAAAATAACAAGTCAAC-AA-AAGGAAAAGGTTGACCAAGATAAAATCGACAAGTCAACTAAG
1 GACAAAACGACAAGTCAACTAAGAA-TAAAAGGTTGACCAAGATAAAATCGACAAGTCAACAAAG
*
2034503 AATAAAAGGTTGACCAA
65 AATAAAAGGTTAACCAA
* *
2034520 GATAAAACTGATAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAA-CTGACAAGTCAACAAA
1 GACAAAAC-GACAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAATC-GACAAGTCAACAAA
** *
2034584 TGAA-AAGGGGTTAATCGAA
64 -GAATAAAAGGTTAA-CCAA
* *
2034603 -ACAAAACGACAAGTCAACTAAGAATGAATGGTTGA
1 GACAAAACGACAAGTCAACTAAGAATAAAAGGTTGA
2034638 GTAACCTTTA
Statistics
Matches: 453, Mismatches: 113, Indels: 66
0.72 0.18 0.10
Matches are distributed among these distances:
78 5 0.01
79 120 0.26
80 112 0.25
81 122 0.27
82 82 0.18
83 12 0.03
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.18
Consensus pattern (81 bp):
GACAAAACGACAAGTCAACTAAGAATAAAAGGTTGACCAAGATAAAATCGACAAGTCAACAAAGA
ATAAAAGGTTAACCAA
Found at i:2035305 original size:63 final size:62
Alignment explanation
Indices: 2035189--2035306 Score: 146
Period size: 63 Copynumber: 1.9 Consensus size: 62
2035179 AAGCTAGAGT
* * *
2035189 AGAAGATCAAGATGAGGATTATGTGACTCTACAATTTCCCTTCAATAGTCAAAACGAGCTAA
1 AGAAGATCAAGATGAGGAATATGTGACTCTAAAATTTCCCATCAATAGTCAAAACGAGCTAA
* * ** * *
2035251 AGAAGATCATGATGGGGAATATGTAGTTTCTAAAATTTTCCATCAGTAGTCAAAAC
1 AGAAGATCAAGATGAGGAATATGT-GACTCTAAAATTTCCCATCAATAGTCAAAAC
2035307 AAATTGACAA
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
62 21 0.46
63 25 0.54
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (62 bp):
AGAAGATCAAGATGAGGAATATGTGACTCTAAAATTTCCCATCAATAGTCAAAACGAGCTAA
Found at i:2041278 original size:12 final size:13
Alignment explanation
Indices: 2041254--2041295 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
2041244 CTTAAGCTAG
*
2041254 TTTTCTCTCTTTT
1 TTTTCTTTCTTTT
2041267 TTTTCTTT-TTTT
1 TTTTCTTTCTTTT
*
2041279 TTTTGTTTCTTTT
1 TTTTCTTTCTTTT
2041292 TTTT
1 TTTT
2041296 TAAGAGTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 11 0.42
13 15 0.58
ACGTcount: A:0.00, C:0.12, G:0.02, T:0.86
Consensus pattern (13 bp):
TTTTCTTTCTTTT
Found at i:2041287 original size:16 final size:15
Alignment explanation
Indices: 2041263--2041296 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
2041253 GTTTTCTCTC
2041263 TTTTTTTTCTTTTTT
1 TTTTTTTTCTTTTTT
2041278 TTTTTGTTTCTTTTTT
1 TTTTT-TTTCTTTTTT
2041294 TTT
1 TTT
2041297 AAGAGTAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.00, C:0.06, G:0.03, T:0.91
Consensus pattern (15 bp):
TTTTTTTTCTTTTTT
Found at i:2042630 original size:13 final size:13
Alignment explanation
Indices: 2042612--2042637 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2042602 TACACCAAGT
2042612 ATGTATCGATACA
1 ATGTATCGATACA
2042625 ATGTATCGATACA
1 ATGTATCGATACA
2042638 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2042635 original size:32 final size:33
Alignment explanation
Indices: 2042594--2042657 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2042584 TAGCCAAACT
**
2042594 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
2042626 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
2042658 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.39, C:0.19, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:2044260 original size:12 final size:12
Alignment explanation
Indices: 2044243--2044271 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
2044233 ACGATGAAGA
2044243 TGATGAAGATGT
1 TGATGAAGATGT
2044255 TGATGAAGATGT
1 TGATGAAGATGT
2044267 TGATG
1 TGATG
2044272 GCCCGAAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.31, C:0.00, G:0.34, T:0.34
Consensus pattern (12 bp):
TGATGAAGATGT
Found at i:2048867 original size:20 final size:20
Alignment explanation
Indices: 2048824--2048869 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2048814 AAATCTTTTG
2048824 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2048845 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2048865 CAAAA
1 CAAAA
2048870 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:2051280 original size:20 final size:20
Alignment explanation
Indices: 2051235--2051286 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
2051225 GTAGCCAAAC
**
2051235 TTGTATCGATACACCAAGTA
1 TTGTATCGATACACCAAAAA
2051255 -TGTATCGATACACCAAAAA
1 TTGTATCGATACACCAAAAA
2051274 TTGTATCGATACA
1 TTGTATCGATACA
2051287 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 17 0.59
20 12 0.41
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.29
Consensus pattern (20 bp):
TTGTATCGATACACCAAAAA
Found at i:2057815 original size:33 final size:32
Alignment explanation
Indices: 2057773--2057835 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
2057763 TACAAGCCAA
**
2057773 TGTATCGATAGAATTTTTTGTGTATCGATACGT
1 TGTATCGATA-AATACTTTGTGTATCGATACGT
*
2057806 TGTATCGATACATACTTTGTGTATCGATAC
1 TGTATCGATAAATACTTTGTGTATCGATAC
2057836 AAGTTTGGCT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.63
33 10 0.37
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (32 bp):
TGTATCGATAAATACTTTGTGTATCGATACGT
Found at i:2058538 original size:39 final size:40
Alignment explanation
Indices: 2058463--2058541 Score: 99
Period size: 39 Copynumber: 2.0 Consensus size: 40
2058453 TTTTCTTTCT
*
2058463 CCCTTAATTAAAGTAATTTTAACAAATTCATACATTCTCC
1 CCCTTAATTAAAGTAATTTTAACAAATTCACACATTCTCC
* * *
2058503 CCCTTAA-T-AAGATAATTTTAGCAAATTTACGCATTCTCC
1 CCCTTAATTAAAG-TAATTTTAACAAATTCACACATTCTCC
2058542 TCTTTTATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
38 3 0.09
39 24 0.71
40 7 0.21
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (40 bp):
CCCTTAATTAAAGTAATTTTAACAAATTCACACATTCTCC
Found at i:2060411 original size:13 final size:13
Alignment explanation
Indices: 2060393--2060431 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2060383 ATAATCCCCC
*
2060393 TGTATCGATACAG
1 TGTATCGATACAA
2060406 TGTATCGATACAA
1 TGTATCGATACAA
2060419 TGTATCGATACAA
1 TGTATCGATACAA
2060432 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2062532 original size:15 final size:15
Alignment explanation
Indices: 2062512--2062542 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2062502 ATTTCGTTTG
*
2062512 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
2062527 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
2062542 G
1 G
2062543 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:2067005 original size:666 final size:666
Alignment explanation
Indices: 2065734--2067005 Score: 2224
Period size: 666 Copynumber: 1.9 Consensus size: 666
2065724 ACACATTTCT
* *
2065734 TCTTGGTTCATCAAGATTGAGTTGTTGATCATTGCACCTTCCATTTTTGATTTGAAATTGATCGT
1 TCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGATCGT
* *
2065799 CTCTCTCGGGTGTGAATCCGTTGAACGAAGGTTAGGCTCTGATACCAATTGAAAGCTTATCAACC
66 CTCTCCCGGGTGTGAATCCGTTGAACGAAGGTTAAGCTCTGATACCAATTGAAAGCTTATCAACC
* *
2065864 AACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTTAAACAACACAATTCG
131 AACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCAAATTTTCGGTTTTGAAACAACACAATTCG
2065929 AAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAACAC
196 AAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAACAC
* *
2065994 GGTACCTACGTCCTCTCTCCTCGACACTTCCTTGTCAAGTGATTACCCAATTCACCAACCGAATT
261 GGCACCTACGTCCTCTCTCCTCGACACTTCCTTGTCAAGTGATTACCCAATTCACCAACCAAATT
* *
2066059 GATTACCTTTAAGGAAAAGGTATAACCTTACAATTCGTATCCTTTACGGGCTAAGATACCAACCT
326 GATTACCTTTAAGGAAAAGGTATAACCTTACAACTCGTATCCTTTACGGGCTAAGATACCAAACT
*
2066124 TACAATCTCTTTGCGAACTATACCACAAGTTCCAAAGAAATTCTCTCTCAAGGTTTACCACAACC
391 TACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAAATTCTCTCTCAAGGTTTACCACAACC
2066189 TTATGACAACAAGGATTTACTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGGGAATT
456 TTATGACAACAAGGATTTACTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGGGAATT
* * *
2066254 TAAGCTCGAACTCAAAATACAAAGAGCTTGGAAAAATAATGACAATATGAACAAAAGCTCTTGAA
521 TAAGCTCGAAATCAAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAA
**
2066319 AAATATAAAATGCTTTGATCTTTGAATGCTAGGTGTTTCTTGCTTGATTCTTCTTGCCTCTTGTT
586 AAATATAAAACACTTTGATCTTTGAATGCTAGGTGTTTCTTGCTTGATTCTTCTTGCCTCTTGTT
2066384 TTGTTTTGTTCTTGCC
651 TTGTTTTGTTCTTGCC
2066400 TCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGATCGT
1 TCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGATCGT
* **
2066465 CTCTCCCGGGTGTGAATCCGTTGAACGGAGGTTAAGCTCTGATACCAATTGAAAGCTTATCAAGT
66 CTCTCCCGGGTGTGAATCCGTTGAACGAAGGTTAAGCTCTGATACCAATTGAAAGCTTATCAACC
*
2066530 AACGAACCGAGA-GGGGGGTGAATTGGTTCTTTTCAAATTTTCGGGTTTTGAAACAACACAATTC
131 AACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCAAATTTTC-GGTTTTGAAACAACACAATTC
*
2066594 GAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTTGGTCCAAACA
195 GAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAACA
* * * *
2066659 CGGCACCTATGTCCTCTCTCCTCGACACTTCCTTGTCGAGTGATTACCTAATTCACTAACCAAAT
260 CGGCACCTACGTCCTCTCTCCTCGACACTTCCTTGTCAAGTGATTACCCAATTCACCAACCAAAT
* * * *
2066724 TGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTATATACCAAAC
325 TGATTACCTTTAAGGAAAAGGTATAACCTTACAACTCGTATCCTTTACGGGCTAAGATACCAAAC
* *
2066789 TTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTTTCTCTCAAGGTTTACCACAAC
390 TTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAAATTCTCTCTCAAGGTTTACCACAAC
*
2066854 CTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGGGAA
455 CTTATGACAACAAGGA-TTTACTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGGGAA
2066919 TTTAAGCTCGAAATC-AAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTG
519 TTTAAGCTCGAAATCAAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTG
2066983 AAAAATATAAAACACTTTGATCT
584 AAAAATATAAAACACTTTGATCT
2067006 AAGAAAACTT
Statistics
Matches: 572, Mismatches: 32, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
665 29 0.05
666 482 0.84
667 61 0.11
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.31
Consensus pattern (666 bp):
TCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGATCGT
CTCTCCCGGGTGTGAATCCGTTGAACGAAGGTTAAGCTCTGATACCAATTGAAAGCTTATCAACC
AACGAACCAAGAGGGGGGGTGAATTGGTTCTTTTCAAATTTTCGGTTTTGAAACAACACAATTCG
AAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAACAC
GGCACCTACGTCCTCTCTCCTCGACACTTCCTTGTCAAGTGATTACCCAATTCACCAACCAAATT
GATTACCTTTAAGGAAAAGGTATAACCTTACAACTCGTATCCTTTACGGGCTAAGATACCAAACT
TACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAAATTCTCTCTCAAGGTTTACCACAACC
TTATGACAACAAGGATTTACTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGGGAATT
TAAGCTCGAAATCAAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTTGAA
AAATATAAAACACTTTGATCTTTGAATGCTAGGTGTTTCTTGCTTGATTCTTCTTGCCTCTTGTT
TTGTTTTGTTCTTGCC
Found at i:2067294 original size:13 final size:13
Alignment explanation
Indices: 2067276--2067301 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2067266 CAATTTTTTG
2067276 TGTATCGATACAT
1 TGTATCGATACAT
2067289 TGTATCGATACAT
1 TGTATCGATACAT
2067302 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2067313 original size:32 final size:33
Alignment explanation
Indices: 2067256--2067319 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2067246 TACAAGCCAA
**
2067256 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2067289 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2067320 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2070479 original size:50 final size:51
Alignment explanation
Indices: 2070394--2070505 Score: 120
Period size: 50 Copynumber: 2.2 Consensus size: 51
2070384 AAGCTTACAA
* * * *
2070394 TAGCTAGCACCTGATGAGGAGATTGAACCCCATAAAATC-AAAGTCTATAG
1 TAGCTAGCACCTGATAAAGAGATTGAACCCCATAAAATCAAAAGTCGACAG
* * * * *
2070444 TAGCTAGCACCTGATAAAGCGGTT-AAGCCCTATAAAGTCAAAAGTCGACAT
1 TAGCTAGCACCTGATAAAGAGATTGAA-CCCCATAAAATCAAAAGTCGACAG
2070495 TAGCTAGCACC
1 TAGCTAGCACC
2070506 GAACAGAGAG
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 2 0.04
50 30 0.59
51 19 0.37
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.21
Consensus pattern (51 bp):
TAGCTAGCACCTGATAAAGAGATTGAACCCCATAAAATCAAAAGTCGACAG
Found at i:2074335 original size:13 final size:13
Alignment explanation
Indices: 2074317--2074342 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2074307 ATAATAACCC
2074317 ATGTATCGATACA
1 ATGTATCGATACA
2074330 ATGTATCGATACA
1 ATGTATCGATACA
2074343 TCGAGGTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2079208 original size:21 final size:21
Alignment explanation
Indices: 2079175--2079215 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
2079165 CTAAGTAAAA
2079175 ATACGTATTGTATCAATACAT
1 ATACGTATTGTATCAATACAT
*
2079196 ATAC-TATTGGTATTAATACA
1 ATACGTATT-GTATCAATACA
2079216 CAAGGTTGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.39, C:0.12, G:0.10, T:0.39
Consensus pattern (21 bp):
ATACGTATTGTATCAATACAT
Found at i:2079281 original size:20 final size:19
Alignment explanation
Indices: 2079256--2079326 Score: 70
Period size: 20 Copynumber: 3.6 Consensus size: 19
2079246 ACCCTGAAAA
2079256 GTATCGATACACATTTAAAT
1 GTATCGATACACA-TTAAAT
* **
2079276 GTATCGATACAAATTGCAT
1 GTATCGATACACATTAAAT
**
2079295 AGTATCGATACACACAAATAT
1 -GTATCGATACACATTAA-AT
2079316 GTATCGATACA
1 GTATCGATACA
2079327 GGACATTGGC
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 4 0.10
20 35 0.85
21 2 0.05
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.30
Consensus pattern (19 bp):
GTATCGATACACATTAAAT
Found at i:2079379 original size:53 final size:53
Alignment explanation
Indices: 2079296--2079432 Score: 247
Period size: 53 Copynumber: 2.6 Consensus size: 53
2079286 AAATTGCATA
2079296 GTATCGATACACACAAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
1 GTATCGATACACAC-AATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
2079350 GTATCGATACACACAATATGTATCGATACAGGTCATTGGCAGTAGCCAAATTT
1 GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
*
2079403 GTATCGATACACAAAATATGTATCGATACA
1 GTATCGATACACACAATATGTATCGATACA
2079433 TTGGTAGTAG
Statistics
Matches: 81, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
53 67 0.83
54 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (53 bp):
GTATCGATACACACAATATGTATCGATACAGGACATTGGCAGTAGCCAAATTT
Found at i:2079475 original size:10 final size:10
Alignment explanation
Indices: 2079456--2079486 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
2079446 AATCTCATTT
2079456 TCACTGTTCA
1 TCACTGTTCA
*
2079466 TCACTATTCA
1 TCACTGTTCA
2079476 TCACTGTTCA
1 TCACTGTTCA
2079486 T
1 T
2079487 GTATCAATAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (10 bp):
TCACTGTTCA
Found at i:2079581 original size:13 final size:13
Alignment explanation
Indices: 2079563--2079587 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2079553 TCACTATTCA
2079563 TGTATCGATACAG
1 TGTATCGATACAG
2079576 TGTATCGATACA
1 TGTATCGATACA
2079588 TCATAAATAG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2080121 original size:34 final size:35
Alignment explanation
Indices: 2080058--2080124 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2080048 CTAAGTGATT
2080058 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2080094 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2080125 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2080200 original size:36 final size:36
Alignment explanation
Indices: 2080160--2080232 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
2080150 AAAGGTAAAC
2080160 AATTCGGTTAATGAATTGTGGTATACTTGGCAAGGA
1 AATTCGGTTAATGAATTGTGGTATACTTGGCAAGGA
2080196 AATTCGGTTAATGAATTGTGGTATACTTGGCAAGGA
1 AATTCGGTTAATGAATTGTGGTATACTTGGCAAGGA
2080232 A
1 A
2080233 GTGCCAAGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.08, G:0.27, T:0.33
Consensus pattern (36 bp):
AATTCGGTTAATGAATTGTGGTATACTTGGCAAGGA
Found at i:2083905 original size:38 final size:38
Alignment explanation
Indices: 2083863--2083938 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
2083853 GGGAAAATTT
*
2083863 GATTTTCAAGTTTGGATTCTTGATTAAACGAGTCCAAA
1 GATTTTCAAGTTTGGATTCTTGATTAAACAAGTCCAAA
2083901 GATTTTCAAGTTTGGATTCTTGATTAAACAAGTCCAAA
1 GATTTTCAAGTTTGGATTCTTGATTAAACAAGTCCAAA
2083939 ACTTTTGATT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (38 bp):
GATTTTCAAGTTTGGATTCTTGATTAAACAAGTCCAAA
Found at i:2088844 original size:28 final size:28
Alignment explanation
Indices: 2088801--2088879 Score: 79
Period size: 28 Copynumber: 2.9 Consensus size: 28
2088791 AAATCCCTTC
* *
2088801 TCAAAGCCCACTAGTTAATGGCACCTCT
1 TCAAAGTCCACAAGTTAATGGCACCTCT
* ** *
2088829 TCAAAGTCCACAAGTTAGTGGCATTTTT
1 TCAAAGTCCACAAGTTAATGGCACCTCT
* *
2088857 TCGAAGTCCACAA-TCAATGGCAC
1 TCAAAGTCCACAAGTTAATGGCAC
2088880 TTGCTGTGTA
Statistics
Matches: 41, Mismatches: 10, Indels: 1
0.79 0.19 0.02
Matches are distributed among these distances:
27 7 0.17
28 34 0.83
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (28 bp):
TCAAAGTCCACAAGTTAATGGCACCTCT
Found at i:2089132 original size:32 final size:32
Alignment explanation
Indices: 2089059--2089175 Score: 175
Period size: 31 Copynumber: 3.7 Consensus size: 32
2089049 GAAACCTTAT
2089059 AAAGCCCACACAAGTCGGTGGCAACCC-TTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
* *
2089090 AAAGCTCACACAAGTCAGTGGCAACCCTTTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
*
2089122 AAAGCCCACACAAGTCGGTGGCAA-CCTTTTA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
* *
2089153 AAAGCCTACACAAGTTGGTGGCA
1 AAAGCCCACACAAGTCGGTGGCA
2089176 TCTTTTTCTA
Statistics
Matches: 78, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
31 52 0.67
32 26 0.33
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.17
Consensus pattern (32 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTTCA
Found at i:2089411 original size:49 final size:49
Alignment explanation
Indices: 2089243--2089482 Score: 230
Period size: 52 Copynumber: 4.8 Consensus size: 49
2089233 CATCTCTTTC
* * * *
2089243 TAAGTCCAATGTCTCTAGCCTTGAATCAGCATATTGGCACCTTTTTC-T
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* *
2089291 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGACGCCTTTATCATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TT-T-ATCTT
* * * ** *
2089343 TAAGTCCAACATCGTTGGCCTTGAATTAGCACGTTGGTACCTTTATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
* * * * *
2089392 TAAGTCCGATATCGCTGGCCTTGAATTAGCATATTGGAATCTTTAACATT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATC-TT
* * * *
2089442 CCTAAGGCCAATGTCACTGGCCTTGAATCAGCACATTGGCA
1 --TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
2089483 TTTTTCTCAT
Statistics
Matches: 156, Mismatches: 29, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
48 36 0.23
49 46 0.29
50 4 0.03
51 4 0.03
52 66 0.42
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (49 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
Found at i:2089463 original size:101 final size:100
Alignment explanation
Indices: 2089241--2089482 Score: 281
Period size: 101 Copynumber: 2.4 Consensus size: 100
2089231 ACCATCTCTT
* * * *
2089241 TCTAAGTCCAATGTCTCTAGCCTTGAATCAGCATATTGGCACCTTTTTCTTAAGTCCAATATCGC
1 TCTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTATCTTAAGTCCAATATCGC
* *
2089306 TGGCCTTGAATCAGCATATTGACGCCTTTATCATC
66 TGGCCTTGAATCAGCATATTGACACCTTTAACATC
* ** ** * * * *
2089341 TTTAAGTCCAACATCGTTGGCCTTGAATTAGCACGTTGGTACCTTTATCTTTAAGTCCGATATCG
1 TCTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTATC-TTAAGTCCAATATCG
* *
2089406 CTGGCCTTGAATTAGCATATTGGA-ATCTTTAACAT-
65 CTGGCCTTGAATCAGCATATT-GACACCTTTAACATC
*
2089441 TCCTAAGGCCAATGTCACTGGCCTTGAATCAGCACATTGGCA
1 T-CTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCA
2089483 TTTTTCTCAT
Statistics
Matches: 114, Mismatches: 25, Indels: 5
0.79 0.17 0.03
Matches are distributed among these distances:
100 39 0.34
101 73 0.64
102 2 0.02
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (100 bp):
TCTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTTATCTTAAGTCCAATATCGC
TGGCCTTGAATCAGCATATTGACACCTTTAACATC
Found at i:2089913 original size:13 final size:13
Alignment explanation
Indices: 2089895--2089920 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2089885 TACACAAAGT
2089895 ATGTATCGATACA
1 ATGTATCGATACA
2089908 ATGTATCGATACA
1 ATGTATCGATACA
2089921 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2089918 original size:32 final size:33
Alignment explanation
Indices: 2089877--2089940 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
2089867 TAGCCAAACT
**
2089877 TGTATCGATACA-CAAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAATGTATCGATACAA
2089909 TGTATCGATACACCAAAAAATGTATCGATACA
1 TGTATCGATACACCAAAAAATGTATCGATACA
2089941 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACACCAAAAAATGTATCGATACAA
Found at i:2096116 original size:20 final size:20
Alignment explanation
Indices: 2096044--2096122 Score: 68
Period size: 20 Copynumber: 3.6 Consensus size: 20
2096034 ATTTTCCAAA
*
2096044 ATGTATCGATACATGTTTCT
1 ATGTATCGATACATCTTTCT
* *
2096064 GTGTATCGATACATCTTGAAAATTCA
1 ATGTATCGATACATC-T-----TTCT
2096090 ATGTATCGATACATCTTTCT
1 ATGTATCGATACATCTTTCT
*
2096110 TTGTATCGATACA
1 ATGTATCGATACA
2096123 CTGTATCGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 12
0.72 0.09 0.18
Matches are distributed among these distances:
20 28 0.60
21 1 0.02
25 1 0.02
26 17 0.36
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATCTTTCT
Found at i:2096129 original size:13 final size:13
Alignment explanation
Indices: 2096111--2096135 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2096101 CATCTTTCTT
2096111 TGTATCGATACAC
1 TGTATCGATACAC
2096124 TGTATCGATACA
1 TGTATCGATACA
2096136 GAGGGTTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:2096282 original size:21 final size:20
Alignment explanation
Indices: 2096258--2096304 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 20
2096248 AATCTTTTGA
*
2096258 AAAATAC-TTGTTTTTCACTTC
1 AAAATACATCGTTTTTCA--TC
2096279 AAAAGTACATCGTTTTTCATC
1 AAAA-TACATCGTTTTTCATC
2096300 AAAAT
1 AAAAT
2096305 CACCTTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
20 1 0.04
21 10 0.43
22 3 0.13
23 9 0.39
ACGTcount: A:0.36, C:0.17, G:0.06, T:0.40
Consensus pattern (20 bp):
AAAATACATCGTTTTTCATC
Found at i:2098158 original size:13 final size:13
Alignment explanation
Indices: 2098140--2098165 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2098130 TACACAAAGT
2098140 ATGTATCGATACA
1 ATGTATCGATACA
2098153 ATGTATCGATACA
1 ATGTATCGATACA
2098166 CCAAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2098163 original size:32 final size:33
Alignment explanation
Indices: 2098122--2098185 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
2098112 TAGCGAAACT
**
2098122 TGTATCGATACA-CAAAGTATGTATCGATACAA
1 TGTATCGATACACCAAAAAATGTATCGATACAA
2098154 TGTATCGATACACCAAAAAATGTATCGATACA
1 TGTATCGATACACCAAAAAATGTATCGATACA
2098186 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 12 0.41
33 17 0.59
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.27
Consensus pattern (33 bp):
TGTATCGATACACCAAAAAATGTATCGATACAA
Found at i:2115225 original size:9 final size:10
Alignment explanation
Indices: 2115195--2115227 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
2115185 AAAATCCTTT
2115195 AACCAAAAAA
1 AACCAAAAAA
2115205 AACCAAAAAA
1 AACCAAAAAA
*
2115215 AACAAAAAAA
1 AACCAAAAAA
2115225 AAC
1 AAC
2115228 ACTATTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.82, C:0.18, G:0.00, T:0.00
Consensus pattern (10 bp):
AACCAAAAAA
Found at i:2117069 original size:79 final size:77
Alignment explanation
Indices: 2116876--2117083 Score: 191
Period size: 79 Copynumber: 2.6 Consensus size: 77
2116866 TAACACGATG
* * ** * *
2116876 CTCCAGCCCTGTTATTTCCGAGGGGACACTCTAACCCCGGCTTTATTTCTAAAATATTGATTTCC
1 CTCCAACCCTGTTATTTCCGA-GGGATACTCTAACCCCGATTTTATTTCCAAAATATCGATTTCC
***
2116941 ACAATTGGGGATA
65 ACAATCAAGGATA
* *** ** * *
2116954 CTCCAACCCAGTTATTTTTTATGGGATGGTCCAACCCCGATTTTATTTCCAAAATGTCGATTTTC
1 CTCCAACCCTGTTATTTCCGA-GGGATACTCTAACCCCGATTTTATTTCCAAAATATCGA-TTTC
* *
2117019 TATAATCAAGGATA
64 CACAATCAAGGATA
* *
2117033 CTCTAACCCTGTTATTTCCGAGGGAATACTCTAACCCTGATTTTATTTCCA
1 CTCCAACCCTGTTATTTCCGAGGG-ATACTCTAACCCCGATTTTATTTCCA
2117084 GAACACCGAT
Statistics
Matches: 99, Mismatches: 29, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
78 48 0.48
79 51 0.52
ACGTcount: A:0.25, C:0.25, G:0.15, T:0.35
Consensus pattern (77 bp):
CTCCAACCCTGTTATTTCCGAGGGATACTCTAACCCCGATTTTATTTCCAAAATATCGATTTCCA
CAATCAAGGATA
Found at i:2118369 original size:26 final size:27
Alignment explanation
Indices: 2118284--2118370 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 27
2118274 TAATTTGCCA
*
2118284 TTGTCAACAAAATTGTTGTCAAGAAAT-T
1 TTGTC-ACAAACTT-TTGTCAAGAAATGT
*
2118312 TTCGTCACAAACTTTTGT--AGAGAACGT
1 TT-GTCACAAACTTTTGTCAAGA-AATGT
* *
2118339 GTGTCAGAAAC-TTTGTCAAGAAATGT
1 TTGTCACAAACTTTTGTCAAGAAATGT
2118365 TTGTCA
1 TTGTCA
2118371 ACATGAATCC
Statistics
Matches: 48, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
25 8 0.17
26 19 0.40
27 9 0.19
28 9 0.19
29 3 0.06
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.34
Consensus pattern (27 bp):
TTGTCACAAACTTTTGTCAAGAAATGT
Found at i:2118687 original size:31 final size:31
Alignment explanation
Indices: 2118637--2118731 Score: 127
Period size: 31 Copynumber: 3.0 Consensus size: 31
2118627 AGTGGAGAAA
*
2118637 CCTTCTAAAGCCCACACAAGTCGGTGGCAAC
1 CCTTCAAAAGCCCACACAAGTCGGTGGCAAC
* * *
2118668 CCTTCAAAATCCCATACAAGTCAGTGGCAACC
1 CCTTCAAAAGCCCACACAAGTCGGTGGCAA-C
* *
2118700 CCTTTAAAAGCCCACACAAGTCGATGGCAAC
1 CCTTCAAAAGCCCACACAAGTCGGTGGCAAC
2118731 C
1 C
2118732 TTTTCAATAT
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
31 28 0.52
32 26 0.48
ACGTcount: A:0.33, C:0.35, G:0.16, T:0.17
Consensus pattern (31 bp):
CCTTCAAAAGCCCACACAAGTCGGTGGCAAC
Found at i:2118719 original size:32 final size:31
Alignment explanation
Indices: 2118637--2118731 Score: 120
Period size: 32 Copynumber: 3.0 Consensus size: 31
2118627 AGTGGAGAAA
*
2118637 CCTTCTAAAGCCCACACAAGTCGGTGGCAA-C
1 CCTTCAAAAGCCCACACAAGTC-GTGGCAACC
* *
2118668 CCTTCAAAATCCCATACAAGTCAGTGGCAACC
1 CCTTCAAAAGCCCACACAAGTC-GTGGCAACC
*
2118700 CCTTTAAAAGCCCACACAAGTCGATGGCAACC
1 CCTTCAAAAGCCCACACAAGTCG-TGGCAACC
2118732 TTTTCAATAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
31 27 0.49
32 28 0.51
ACGTcount: A:0.33, C:0.35, G:0.16, T:0.17
Consensus pattern (31 bp):
CCTTCAAAAGCCCACACAAGTCGTGGCAACC
Found at i:2118897 original size:48 final size:49
Alignment explanation
Indices: 2118828--2119015 Score: 182
Period size: 48 Copynumber: 3.8 Consensus size: 49
2118818 CATCTCTTTC
* *
2118828 TAAGTCCAATGTCGCTAGCCTTGAATCAGCATATTGGCACATTTTTC-T
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTTCGT
* * *
2118876 TACGTCCAATATCGCTGGCCTTGAGTCAGCATATTGGCACCTTTGTCATCGT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTT-T--TCGT
* ** * * * * *
2118928 TAAGTCTAACGTCGCTGGCCTTGAATCGGCACATTGGTACCA-TTATCTT
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA-CATTTTTCGT
* * *
2118977 TAAGTTCGATATCGCTGGCCTTGAATCATCATATTGGCA
1 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA
2119016 TCTTTAACAT
Statistics
Matches: 110, Mismatches: 25, Indels: 9
0.76 0.17 0.06
Matches are distributed among these distances:
48 39 0.35
49 34 0.31
51 2 0.02
52 34 0.31
53 1 0.01
ACGTcount: A:0.23, C:0.24, G:0.20, T:0.34
Consensus pattern (49 bp):
TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACATTTTTCGT
Found at i:2119043 original size:101 final size:100
Alignment explanation
Indices: 2118827--2119067 Score: 272
Period size: 101 Copynumber: 2.4 Consensus size: 100
2118817 CCATCTCTTT
* * * *
2118827 CTAAGTCC-AATGTCGCTAGCCTTGAATCAGCATATTGGCACATTTTTCTTACGTCCAATATCGC
1 CTAAG-CCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACATTTCTCTTAAGTCCAATATCGC
* **
2118891 TGGCCTTGAGTCAGCATATTGGCACCTTTGTCATCG
65 TGGCCTTGAATCAGCATATTGGCACCTTTAACATCG
* * * * * * *
2118927 TTAAGTCTAACGTCGCTGGCCTTGAATCGGCACATTGGTACCATTATCT-TTAAGTTCGATATCG
1 CTAAGCCTAATGTCGCTGGCCTTGAATCAGCACATTGGCA-CATT-TCTCTTAAGTCCAATATCG
* *
2118991 CTGGCCTTGAATCATCATATTGGCATCTTTAACATTC-
64 CTGGCCTTGAATCAGCATATTGGCACCTTTAACA-TCG
*
2119028 CTAAGCCTAATGTCGCAGGCCTTGAATCAGCACATTGGCA
1 CTAAGCCTAATGTCGCTGGCCTTGAATCAGCACATTGGCA
2119068 TTTTTTCCCT
Statistics
Matches: 115, Mismatches: 22, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
99 1 0.01
100 31 0.27
101 79 0.69
102 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.19, T:0.32
Consensus pattern (100 bp):
CTAAGCCTAATGTCGCTGGCCTTGAATCAGCACATTGGCACATTTCTCTTAAGTCCAATATCGCT
GGCCTTGAATCAGCATATTGGCACCTTTAACATCG
Found at i:2119133 original size:52 final size:52
Alignment explanation
Indices: 2119034--2119137 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 52
2119024 ATTCCTAAGC
* * * * *
2119034 CTAATGTCGCAGGCCTTGAATCAGCACATTGGCATTTTTTCCCTCTTCAAGT
1 CTAATGTCGCAGGCCGTGAATCAACACATTGACATTTTCTCCATCTTCAAGT
**
2119086 CTAATGTCGTTGGCCGTGAATCAACACATTGACATTCTTCT-CATCTTCAAGT
1 CTAATGTCGCAGGCCGTGAATCAACACATTGACATT-TTCTCCATCTTCAAGT
2119138 TTGACATCGC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
52 41 0.93
53 3 0.07
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (52 bp):
CTAATGTCGCAGGCCGTGAATCAACACATTGACATTTTCTCCATCTTCAAGT
Found at i:2125383 original size:13 final size:13
Alignment explanation
Indices: 2125365--2125390 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2125355 TACACAAAGT
2125365 ATGTATCGATACA
1 ATGTATCGATACA
2125378 ATGTATCGATACA
1 ATGTATCGATACA
2125391 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2125388 original size:32 final size:33
Alignment explanation
Indices: 2125347--2125410 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2125337 TAGCAAAACT
**
2125347 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2125379 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2125411 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2129463 original size:15 final size:15
Alignment explanation
Indices: 2129443--2129474 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
2129433 ATAAAAGTGT
*
2129443 TCAAAATGAGGAAGC
1 TCAAAATGAAGAAGC
2129458 TCAAAATGAAGAAGC
1 TCAAAATGAAGAAGC
2129473 TC
1 TC
2129475 CAAACGAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.22, T:0.16
Consensus pattern (15 bp):
TCAAAATGAAGAAGC
Found at i:2131562 original size:13 final size:13
Alignment explanation
Indices: 2131544--2131581 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2131534 CATTTTTCTT
2131544 TGTATCGATACAA
1 TGTATCGATACAA
*
2131557 TGTATCGATACAC
1 TGTATCGATACAA
2131570 TGTATCGATACA
1 TGTATCGATACA
2131582 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2131736 original size:20 final size:20
Alignment explanation
Indices: 2131693--2131738 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2131683 AAATCTTTTG
2131693 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2131714 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2131734 CAAAA
1 CAAAA
2131739 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:2132865 original size:32 final size:33
Alignment explanation
Indices: 2132824--2132887 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2132814 TAGCCAAACT
**
2132824 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
*
2132856 TGTATCGATATACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
2132888 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:2135122 original size:21 final size:21
Alignment explanation
Indices: 2135089--2135138 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
2135079 TTGCAAGTTG
*
2135089 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
2135111 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
2135132 AAATAAA
1 AAATAAA
2135139 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:2136954 original size:15 final size:15
Alignment explanation
Indices: 2136934--2136964 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
2136924 TAAAAATGTC
*
2136934 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
2136949 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
2136964 C
1 C
2136965 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:2139048 original size:13 final size:13
Alignment explanation
Indices: 2139030--2139067 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
2139020 CATTTTTCTT
2139030 TGTATCGATACAA
1 TGTATCGATACAA
*
2139043 TGTATCGATACAT
1 TGTATCGATACAA
2139056 TGTATCGATACA
1 TGTATCGATACA
2139068 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2139220 original size:20 final size:20
Alignment explanation
Indices: 2139177--2139222 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
2139167 AAATCTTTTG
2139177 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
2139198 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
2139218 CAAAA
1 CAAAA
2139223 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:2140267 original size:20 final size:19
Alignment explanation
Indices: 2140212--2140267 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
2140202 AAAACCCTTA
*
2140212 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
2140232 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
2140252 AATGTATCGATACATG
1 AAAGTATCGATACATG
2140268 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:2140349 original size:32 final size:33
Alignment explanation
Indices: 2140308--2140371 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
2140298 TAGCCAAACT
**
2140308 TGTATCGATACACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
*
2140340 TGTATCGATATACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
2140372 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:2141841 original size:23 final size:21
Alignment explanation
Indices: 2141799--2141842 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 21
2141789 GTTTAAAGTT
**
2141799 TTTGCTTGACTTTGTGTTTTA
1 TTTGCTTGACTTTGAATTTTA
2141820 TTTGCATTGTACTTTGAATTTTA
1 TTTGC-TTG-ACTTTGAATTTTA
2141843 ATCTATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 5 0.26
22 3 0.16
23 11 0.58
ACGTcount: A:0.16, C:0.09, G:0.16, T:0.59
Consensus pattern (21 bp):
TTTGCTTGACTTTGAATTTTA
Found at i:2142748 original size:13 final size:13
Alignment explanation
Indices: 2142730--2142755 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2142720 TACACAAAGT
2142730 ATGTATCGATACA
1 ATGTATCGATACA
2142743 ATGTATCGATACA
1 ATGTATCGATACA
2142756 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2142753 original size:32 final size:33
Alignment explanation
Indices: 2142712--2142775 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2142702 TAGCCAAACT
**
2142712 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2142744 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2142776 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2146093 original size:50 final size:50
Alignment explanation
Indices: 2146036--2146183 Score: 149
Period size: 50 Copynumber: 2.9 Consensus size: 50
2146026 TCATAGATAT
* *
2146036 TTTTATTTCTAAACCACCAATTTTTCACCATCGGGGATACTTTAACC-CTAG
1 TTTTATTTCTAAA-CACCAATTTTCCACCATCGGGGATACTCTAACCTC-AG
** * * *
2146087 -TTTATTTCTAAA-ATTCTGATTTTCCACCATCGAGAATACTCTAACCTCGG
1 TTTTATTTCTAAACA--CCAATTTTCCACCATCGGGGATACTCTAACCTCAG
* *
2146137 TTTTATTTCTACAACACCAATTTTCCACCATCAGGGATACTCCAACC
1 TTTTATTTCTA-AACACCAATTTTCCACCATCGGGGATACTCTAACC
2146184 CTGCATTTTT
Statistics
Matches: 78, Mismatches: 13, Indels: 12
0.76 0.13 0.12
Matches are distributed among these distances:
48 1 0.01
50 38 0.49
51 36 0.46
52 2 0.03
53 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.09, T:0.36
Consensus pattern (50 bp):
TTTTATTTCTAAACACCAATTTTCCACCATCGGGGATACTCTAACCTCAG
Found at i:2146243 original size:129 final size:128
Alignment explanation
Indices: 2146068--2146313 Score: 343
Period size: 129 Copynumber: 1.9 Consensus size: 128
2146058 TTTCACCATC
* ** * *
2146068 GGGGATACTTTAACCCTAGTTTATTTCTAAAATTCTGATTTTCCACCATCGAGAATACTCTAA-C
1 GGGGATACTCTAACCCTAGTTTATTTCTAAAACACTAATTTTCCACCATCAAGAATACTCTAACC
* *
2146132 CTCGGTTTTATTTCTACAACACCAATTTTCCACCATCAGG-GATACTCCAACCCTGCATTTTTGA
66 CT-AGTTTTATTTCTAAAACACCAATTTTCCACCATC-GGAGATACTCCAACCCTGCATTTTTGA
* * *
2146196 GGGGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAAC
1 GGGGATACTCTAACCCT-AGTTTATTTCTAAAACACTAATTTTCCACCATCAAGAATACTCTAAC
* *
2146261 CCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCC
65 CCTAGTTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCC
2146314 CAGTTTTATT
Statistics
Matches: 103, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
128 18 0.17
129 82 0.80
130 3 0.03
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.34
Consensus pattern (128 bp):
GGGGATACTCTAACCCTAGTTTATTTCTAAAACACTAATTTTCCACCATCAAGAATACTCTAACC
CTAGTTTTATTTCTAAAACACCAATTTTCCACCATCGGAGATACTCCAACCCTGCATTTTTGA
Found at i:2146259 original size:51 final size:51
Alignment explanation
Indices: 2146198--2146517 Score: 454
Period size: 51 Copynumber: 6.3 Consensus size: 51
2146188 ATTTTTGAGG
* *
2146198 GGATACTCTAACCCT-GATTTTATTTCTAATACA-CTAATTTTCCACCATCAA
1 GGATACTCTAACCCTAG-TTTTATTTCTAAAACATC-GATTTTCCACCATCAA
*
2146249 GGATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATC-G
1 GGATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
* *
2146299 GAGATACTCCAACCCCAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
1 G-GATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
* *
2146351 GGATACTCTAACCCT-GATTTTATTTCTAATACA-CTAATTTTCCACCATCAA
1 GGATACTCTAACCCTAG-TTTTATTTCTAAAACATC-GATTTTCCACCATCAA
*
2146402 GGATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATC-G
1 GGATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
* *
2146452 GAGATACTCCAACCCCAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
1 G-GATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
2146504 GGATACTCTAACCC
1 GGATACTCTAACCC
2146518 CATTATTTTT
Statistics
Matches: 242, Mismatches: 17, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
50 4 0.02
51 232 0.96
52 6 0.02
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (51 bp):
GGATACTCTAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAA
Found at i:2146342 original size:180 final size:178
Alignment explanation
Indices: 2146036--2146371 Score: 480
Period size: 180 Copynumber: 1.9 Consensus size: 178
2146026 TCATAGATAT
* ** * *
2146036 TTTTATTTCTAAACCACCAATTTTTCACCATCGGGGATACTTTAACCCTAGTTTATTTCTAAAAT
1 TTTTATTTCTAAACCACCAATTTTCCACCATCAAGGATACTCTAACCCTAGTTTATTTCTAAAAA
* * * *
2146101 TCTGATTTTCCACCATCGAGAATACTCTAACCTCGGTTTTATTTCTACAACACCAATTTTCCACC
66 TCTGATTTTCCACCATCGAGAATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTCCACC
*
2146166 ATCAGGGATACTCCAACCCTGCATTTTTGAGGGGATACTCTAACCCTGA
131 ATCAAGGATACTCCAACCCTG-ATTTTTGAGGGGATACTCTAACCCTGA
*
2146215 TTTTATTTCTAATA-CACTAATTTTCCACCATCAAGGATACTCTAACCCTAGTTTTATTTCTAAA
1 TTTTATTTCTAA-ACCACCAATTTTCCACCATCAAGGATACTCTAACCCTAG-TTTATTTCTAAA
* *
2146279 ACATC-GATTTTCCACCATCG-GAGATACTCCAACCCCAGTTTTATTTCTAAAACATCGATTTTC
64 A-ATCTGATTTTCCACCATCGAGA-ATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTC
*
2146342 CACCATCAAGGATACTCTAACCCTGATTTT
127 CACCATCAAGGATACTCCAACCCTGATTTT
2146372 ATTTCTAATA
Statistics
Matches: 139, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
179 51 0.37
180 86 0.62
181 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.36
Consensus pattern (178 bp):
TTTTATTTCTAAACCACCAATTTTCCACCATCAAGGATACTCTAACCCTAGTTTATTTCTAAAAA
TCTGATTTTCCACCATCGAGAATACTCCAACCCCAGTTTTATTTCTAAAACACCAATTTTCCACC
ATCAAGGATACTCCAACCCTGATTTTTGAGGGGATACTCTAACCCTGA
Found at i:2146476 original size:153 final size:153
Alignment explanation
Indices: 2146198--2146517 Score: 640
Period size: 153 Copynumber: 2.1 Consensus size: 153
2146188 ATTTTTGAGG
2146198 GGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAACCC
1 GGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAACCC
2146263 TAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCCCAGTTTTATTTCTA
66 TAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCCCAGTTTTATTTCTA
2146328 AAACATCGATTTTCCACCATCAA
131 AAACATCGATTTTCCACCATCAA
2146351 GGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAACCC
1 GGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAACCC
2146416 TAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCCCAGTTTTATTTCTA
66 TAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCCCAGTTTTATTTCTA
2146481 AAACATCGATTTTCCACCATCAA
131 AAACATCGATTTTCCACCATCAA
2146504 GGATACTCTAACCC
1 GGATACTCTAACCC
2146518 CATTATTTTT
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
153 167 1.00
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.34
Consensus pattern (153 bp):
GGATACTCTAACCCTGATTTTATTTCTAATACACTAATTTTCCACCATCAAGGATACTCTAACCC
TAGTTTTATTTCTAAAACATCGATTTTCCACCATCGGAGATACTCCAACCCCAGTTTTATTTCTA
AAACATCGATTTTCCACCATCAA
Found at i:2146624 original size:79 final size:79
Alignment explanation
Indices: 2146453--2146673 Score: 223
Period size: 79 Copynumber: 2.8 Consensus size: 79
2146443 CCACCATCGG
*
2146453 AGATACTCCAACCCCAGTTTTATTTCTAAAACATCGATTTTCCACCATCAAGGATACTCTAACCC
1 AGATACTCCAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAAGGATACTCTAACCC
* * *
2146518 CATTATTTTTGAGA
66 CACTATTTCTCAGA
** * * **
2146532 AGATACTTAAACCCTGGTTTTATTTCTAAAACA-CTGATTTTTCACCATCGGGGATACTCTAACC
1 AGATACTCCAACCCTAGTTTTATTTCTAAAACATC-GATTTTCCACCATCAAGGATACTCTAACC
**
2146596 CTGCTATTTCTCAGA
65 CCACTATTTCTCAGA
* * * * * * * *
2146611 GGATACTCCAACCCTAG-TTTGTTTCCAAAATATCAACTTTT-TATCATCAAGGATACTCCAACC
1 AGATACTCCAACCCTAGTTTTATTTCTAAAACATCGA-TTTTCCACCATCAAGGATACTCTAACC
2146674 TCATTTTTAT
Statistics
Matches: 114, Mismatches: 25, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
78 31 0.27
79 83 0.73
ACGTcount: A:0.30, C:0.26, G:0.10, T:0.33
Consensus pattern (79 bp):
AGATACTCCAACCCTAGTTTTATTTCTAAAACATCGATTTTCCACCATCAAGGATACTCTAACCC
CACTATTTCTCAGA
Found at i:2149125 original size:79 final size:79
Alignment explanation
Indices: 2149009--2149323 Score: 242
Period size: 79 Copynumber: 4.0 Consensus size: 79
2148999 AGTAAAGTCG
* * * * * *
2149009 GGGTTGGTGTATCTCCTCGAAAATAATAGGGTAGGAGTATCCCCAATTGTTGAAAATCAATGTTT
1 GGGTTGGAGTATCCCCTCAAAAATAA-CGGGTAGGAGTATCCCCGATTGTTGAAAATCGATGTTT
* *
2149074 TGGAAATAAAAATTA
65 TAGAAATAAAAACTA
** * * * * *
2149089 GGGTTGGAGTATCCCCTCAAAAATAACGGGCT-GGAGTATCATCGCTTATGGAAAATTGATATTT
1 GGGTTGGAGTATCCCCTCAAAAATAACGGG-TAGGAGTATCCCCGATTGTTGAAAATCGATGTTT
* *
2149153 TAGACATAAAAACTG
65 TAGAAATAAAAACTA
* * * *
2149168 GGGTTGGAATATCCCTTCAAAAATAACAAGGTAGGAGTATCCCCGA-TGGTGAAAAATCGATGTT
1 GGGTTGGAGTATCCCCTCAAAAATAAC-GGGTAGGAGTATCCCCGATTGTTG-AAAATCGATGTT
* *
2149232 TTAGAAATAAAATCGA
64 TTAGAAATAAAAACTA
* * * * * * * * * * *
2149248 -GGTTAGAGTATTCCCTCGAAACTAATGAGGTTGGAGTGTCCCCGATGGTGGAATAT-GATATTT
1 GGGTTGGAGTATCCCCTCAAAAATAACG-GGTAGGAGTATCCCCGATTGTTGAAAATCGATGTTT
*
2149311 TGGAAATAAAAAC
65 TAGAAATAAAAAC
2149324 ATCGATGAAA
Statistics
Matches: 180, Mismatches: 49, Indels: 14
0.74 0.20 0.06
Matches are distributed among these distances:
78 17 0.09
79 103 0.57
80 60 0.33
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.28
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCTCAAAAATAACGGGTAGGAGTATCCCCGATTGTTGAAAATCGATGTTTT
AGAAATAAAAACTA
Found at i:2150157 original size:42 final size:45
Alignment explanation
Indices: 2150009--2150287 Score: 218
Period size: 42 Copynumber: 6.6 Consensus size: 45
2149999 CCTACACTTC
** *
2150009 GAGGAC-AAA-GGAAAAGAAGGAAATTAAA-TTTGTCCTACTCTTT
1 GAGGACAAAAGGGAAAAGAAGGAAA-TAAAGTGCGTCCTGCTCTTT
* * * ** *
2150052 GTGGA-GAAAGGG-AAAG--GGAAAT-AAGTGTGTTTTACTCTTT
1 GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTCTTT
2150092 GAGGAC-AAAGGG--AA-AAGGAAATAAAGTGCGTCCTGCTCTTT
1 GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTCTTT
* * *
2150133 GAGGACAAAAGGG-AAA-AA-GAAATAAAATGCGTCATGCACTTT
1 GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTCTTT
* * *
2150175 GAGGACAAAGGGGAAAAGAAGGAAATGAAGTGCATCCTGCTCTTTT
1 GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTC-TTT
* * * *
2150221 G-GGA-TAAAGGGAAAATAAGGAAATGAAGTGCGTCCTGCTCTAT
1 GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTCTTT
* *
2150264 GAGGAC--AATGGAAAAAAAGGAAAT
1 GAGGACAAAAGGGAAAAGAAGGAAAT
2150288 GACGAAAGTG
Statistics
Matches: 196, Mismatches: 25, Indels: 30
0.78 0.10 0.12
Matches are distributed among these distances:
39 4 0.02
40 29 0.15
41 25 0.13
42 39 0.20
43 37 0.19
44 39 0.20
45 19 0.10
46 4 0.02
ACGTcount: A:0.41, C:0.11, G:0.28, T:0.21
Consensus pattern (45 bp):
GAGGACAAAAGGGAAAAGAAGGAAATAAAGTGCGTCCTGCTCTTT
Found at i:2150213 original size:87 final size:87
Alignment explanation
Indices: 2150088--2150289 Score: 236
Period size: 87 Copynumber: 2.3 Consensus size: 87
2150078 GTGTTTTACT
* *
2150088 CTTTGAGGACAAAGGG--AAAAGGAAATAAAGTGCGTCCTGCTC-TTTGAGGACAAAAGGG-AAA
1 CTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTGCATCCTGCTCTTTTG-GGA-AAAAGGGAAAA
2150149 -AA-GAAATAAAATGCGTCATGCA
64 TAAGGAAATAAAATGCGTCATGCA
*
2150171 CTTTGAGGACAAAGGGGAAAAGAAGGAAATGAAGTGCATCCTGCTCTTTTGGGATAAAGGGAAAA
1 CTTTGAGGACAAA-GGGAAAA-AAGGAAATGAAGTGCATCCTGCTCTTTTGGGAAAAAGGGAAAA
* * * *
2150236 TAAGGAAATGAAGTGCGTCCTGCT
64 TAAGGAAATAAAATGCGTCATGCA
* * *
2150260 CTATGAGGACAATGGAAAAAAAGGAAATGA
1 CTTTGAGGACAAAGGGAAAAAAGGAAATGA
2150290 CGAAAGTGTG
Statistics
Matches: 101, Mismatches: 10, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
83 13 0.13
84 3 0.03
86 8 0.08
87 38 0.38
88 12 0.12
89 27 0.27
ACGTcount: A:0.41, C:0.12, G:0.28, T:0.19
Consensus pattern (87 bp):
CTTTGAGGACAAAGGGAAAAAAGGAAATGAAGTGCATCCTGCTCTTTTGGGAAAAAGGGAAAATA
AGGAAATAAAATGCGTCATGCA
Found at i:2150241 original size:44 final size:43
Alignment explanation
Indices: 2150009--2150287 Score: 209
Period size: 44 Copynumber: 6.6 Consensus size: 43
2149999 CCTACACTTC
* ** *
2150009 GAGGACAAA-GGAAAAGAAGGAAATTAAA-TTTGTCCTACTCTTT
1 GAGGAAAAAGGGAAAA-AAGGAAA-TAAAGTGCGTCCTGCTCTTT
* * * * ** *
2150052 GTGGAGAAAGGG--AAAGGGAAAT-AAGTGTGTTTTACTCTTT
1 GAGGAAAAAGGGAAAAAAGGAAATAAAGTGCGTCCTGCTCTTT
*
2150092 GAGGACAAAGGG--AAAAGGAAATAAAGTGCGTCCTGCTCTTT
1 GAGGAAAAAGGGAAAAAAGGAAATAAAGTGCGTCCTGCTCTTT
* * *
2150133 GAGGACAAAAGGG-AAAAA-GAAATAAAATGCGTCATGCACTTT
1 GAGGA-AAAAGGGAAAAAAGGAAATAAAGTGCGTCCTGCTCTTT
* * *
2150175 GAGGACAAAGGGGAAAAGAAGGAAATGAAGTGCATCCTGCTCTTTT
1 GAGGA-AAAAGGGAAAA-AAGGAAATAAAGTGCGTCCTGCTC-TTT
* * *
2150221 G-GGATAAAGGGAAAATAAGGAAATGAAGTGCGTCCTGCTCTAT
1 GAGGAAAAAGGGAAAA-AAGGAAATAAAGTGCGTCCTGCTCTTT
* * *
2150264 GAGGACAATGGAAAAAAAGGAAAT
1 GAGGAAAAAGGGAAAAAAGGAAAT
2150288 GACGAAAGTG
Statistics
Matches: 195, Mismatches: 31, Indels: 20
0.79 0.13 0.08
Matches are distributed among these distances:
39 2 0.01
40 32 0.16
41 25 0.13
42 41 0.21
43 25 0.13
44 47 0.24
45 19 0.10
46 4 0.02
ACGTcount: A:0.41, C:0.11, G:0.28, T:0.21
Consensus pattern (43 bp):
GAGGAAAAAGGGAAAAAAGGAAATAAAGTGCGTCCTGCTCTTT
Found at i:2150663 original size:61 final size:62
Alignment explanation
Indices: 2150307--2152781 Score: 2891
Period size: 61 Copynumber: 40.2 Consensus size: 62
2150297 GTGTTATTTC
* * * * *
2150307 TTGAGGACTAAAAGGTGCTACCAACTCGTGTGGGCTTT-AAAGGGGGAAAGGAAAGTGTCCTACT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA---AGAAA--AAGGCGTCCTGCT
*
2150371 CC
61 CT
* * *
2150373 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGGGGAAAAGAAAGTGTCCTACT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAA---G-AAA-AAGGCGTCCTGCT
*
2150437 CC
61 CT
* * *
2150439 TTGAGGACTAAAAGGTGCCACCAATTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2150501 TTAAGGACTAAAAGGTGCTACCAACTCATGTGGGCCTTGAAAAGAAAAAAGCATCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* **** * *
2150563 TTGAGGACTAAAGGGTGCCACCAACTTACATGGGCTTTGAAAAGAAAAATGTGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2150625 TTGAGGACTAAATGGTGCCA-CAACTCGTGTGGGCTTTGAAAAGAAAAAAGCATCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * * *
2150686 TTGAGGACTAAATGATGCCA-TAACTTGTGTGGGCTTGGAAAAGAAAAAAGCATCATGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * ** * *
2150747 TTTAGGACTAAAGGGTGCCA-CAACTCAAGTGGGCTTTGAAAAGAAAAAGGCGTCTTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * *
2150808 TTGAGGACTAAAGGGTGCCACCAATTCCTGTAGGC-TTGAAAAGGAAAAGGCGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * ** *
2150869 TTGAGGACTAAAAGGTGCCACCTACTCATGTGGGCTTCAAAAAGAAAAAGGCATCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* ** * *
2150931 TTAAGGACTAAAA-GTGCCACCAACTTATGTGGGC-TTGAAAAGAAAAAGGCATCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * *
2150991 TTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCTTCCGGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2151053 TCGAGGACTAAAAGGTGCCACCAACTCATATGTGC-TTGAAAATAAAAGGGCGTCTTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2151114 TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAATGAAAAATGTGT-CTCGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCT-GCTCT
* * *
2151176 TTGAGAACTGAAAGGTGCCA-CAACTCGTGTGGGC-TTGTAAAGAAAAAGGCGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * *
2151236 TTGAGGA-TGAAAGGGTGCCACCAAGTCCTATAGGC-TTGAAAAGGAAAAGGCGTCCTGCTCT
1 TTGAGGACT-AAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* *
2151297 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2151359 TTAAGGACTAAATGGTCCCACCAACTCATGTGGGC-TTGAAAAGAAAAAGGCATGCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
2151420 TTGAGGACT-AAAGAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * ** *
2151482 TTAAGGCCTAAAAAGTGCCACCAACTCGTATGTTC-TTGAAAAGAAAAAGGCGTCTTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * *
2151543 TTAAGGACTAAAAGGTACCACCAACTCGTGTGGGCTTTGAAATGAAAAACGTGTCCTGCT-T
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* *
2151604 TCTGAGGACT-AAAGTGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCTCT
1 T-TGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * *
2151667 TTGAGGACTAAAAAGTGCCCCCAACTCTTGTAGG-TTTGGAAAGGAAAAGGCGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* ** *
2151728 TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGC-TTGAAAAGAAAAAATCATCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2151789 TTGAGCACT-ATAGAGTGCCACCAACTCGTGTGGGCTTTGAAAA-AAAAATGAGTCCTGCTCT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * *
2151850 TTGAGGACTAAAAAGTGCCACCAACTCGTATGTGC-TTGAAAAGAAAAATGCGTCTTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2151911 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCATTGAAATGAAAAATGTGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2151973 TTGAGGACTAAAAGGTGCCA-CAACTCGTGTGGGC-TTGAAAAGAAAAAGGTGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152033 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2152095 TTGAGGCCTAAAAAGTGCCACCAACTCATATGTGC-TTGAAAAGAAAAAGGCGGCTTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * ** * *
2152156 TTAAGGACTAAAAGGTACCACCAACTTGTGTGGGCTTTG-AAATCAAAAGCGTGTCCTGCTTT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG-GCGTCCTGCTCT
* * *
2152218 TTGAGGACT-AAAGTGTGCCACCAACTCTTGTGGGCTTTGAAAAGAAAAAGGTGTCCTACTCT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2152280 TTGAGGACTAAAAGGTGCCACCAACTCCTGTAGGC-TTGAAAAGGAAAAGGCGTCCTACTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* *
2152341 TTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTAG-CCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGG-CGTCCTGCTCT
* * *
2152403 TTAAGGACTAAAAGGTGCCACCAACTCATGTGGGC-TTGAAAAGAAAAAGGCATCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152464 TTGAGGACT-AAAGAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGAGTCCTGCTCT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * ** * * *
2152525 CTGAGGACTAAAAAGTCCCACCAACTCGTATATGC-TTGGAAAGAAAAATGCGTCTTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2152586 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGCCTTTGAAATGAAAAATGTGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152648 TTGAGGACTAAAAGGTGCCA-CAACTCGTGTGGGC-TTGAAAAGAAAAAGGTGTCCTGCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2152708 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGATTTTAAATGAAAAACGTGTCCTCCTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152770 TTGAGGGCTAAA
1 TTGAGGACTAAA
2152782 GGGCTAAAAG
Statistics
Matches: 2087, Mismatches: 275, Indels: 98
0.85 0.11 0.04
Matches are distributed among these distances:
59 1 0.00
60 179 0.09
61 989 0.47
62 792 0.38
63 24 0.01
64 1 0.00
66 94 0.05
67 7 0.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (62 bp):
TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
Found at i:2150691 original size:123 final size:124
Alignment explanation
Indices: 2150307--2152781 Score: 2891
Period size: 123 Copynumber: 20.1 Consensus size: 124
2150297 GTGTTATTTC
* * * * *
2150307 TTGAGGACTAAAAGGTGCTACCAACTCGTGTGGGCTTT-AAAGGGGGAAAGGAAAGTGTCCTACT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAA---AGAAA--AAGGCGTCCTGCT
* * * * *
2150371 CCTTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTT-AAAAGGGGAAAAGAAAGTGTCCTA
61 CTTTGAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAA---G-AAA-AAGGCGTCCTG
*
2150435 CTCC
121 CTCT
* * * *
2150439 TTGAGGACTAAAAGGTGCCACCAATTCGTGTGGGCTTTAAAAAGAAAAAGGCGTCCTACTCTTTA
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * *
2150504 AGGACTAAAAGGTGCTACCAACTCATGTGGGCCTTGAAAAGAAAAAAGCATCCTACTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* **** * *
2150563 TTGAGGACTAAAGGGTGCCACCAACTTACATGGGCTTTGAAAAGAAAAATGTGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * *
2150628 AGGACTAAATGGTGCCA-CAACTCGTGTGGGCTTTGAAAAGAAAAAAGCATCCTACTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * * * *
2150686 TTGAGGACTAAATGATGCCA-TAACTTGTGTGGGCTTGGAAAAGAAAAAAGCATCATGCTCTTTT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * *
2150750 AGGACTAAAGGGTGCCA-CAACTCAAGTGGGCTTTGAAAAGAAAAAGGCGTCTTACTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * *
2150808 TTGAGGACTAAAGGGTGCCACCAATTCCTGTAGGC-TTGAAAAGGAAAAGGCGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* ** *
2150872 AGGACTAAAAGGTGCCACCTACTCATGTGGGCTTCAAAAAGAAAAAGGCATCCTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* ** * *
2150931 TTAAGGACTAAAA-GTGCCACCAACTTATGTGGGC-TTGAAAAGAAAAAGGCATCCTACTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * *
2150994 AGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCTTCCGGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * * *
2151053 TCGAGGACTAAAAGGTGCCACCAACTCATATGTGC-TTGAAAATAAAAGGGCGTCTTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * *
2151117 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAATGAAAAATGTGT-CTCGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCT-GCTCT
* * *
2151176 TTGAGAACTGAAAGGTGCCA-CAACTCGTGTGGGC-TTGTAAAGAAAAAGGCGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * * *
2151239 AGGA-TGAAAGGGTGCCACCAAGTCCTATAGGC-TTGAAAAGGAAAAGGCGTCCTGCTCT
66 AGGACT-AAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * *
2151297 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCATCCTACTCTTTA
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * *
2151362 AGGACTAAATGGTCCCACCAACTCATGTGGGC-TTGAAAAGAAAAAGGCATGCTACTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
2151420 TTGAGGACT-AAAGAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTT
* * * * * ** *
2151484 AAGGCCTAAAAAGTGCCACCAACTCGTATGTTC-TTGAAAAGAAAAAGGCGTCTTGCTCT
65 GAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * *
2151543 TTAAGGACTAAAAGGTACCACCAACTCGTGTGGGCTTTGAAATGAAAAACGTGTCCTGCT-TTCT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTT-T
*
2151607 GAGGACT-AAAGTGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTGTCCTGCTCT
65 GAGGACTAAAAG-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * * *
2151667 TTGAGGACTAAAAAGTGCCCCCAACTCTTGTAGG-TTTGGAAAGGAAAAGGCGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
** *
2151731 AGGACTAAAAGGTGCCACCAACTCATGTGGGC-TTGAAAAGAAAAAATCATCCTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2151789 TTGAGCACT-ATAGAGTGCCACCAACTCGTGTGGGCTTTGAAAA-AAAAATGAGTCCTGCTCTTT
1 TTGAGGACTAAAAG-GTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTT
* * * * * *
2151852 GAGGACTAAAAAGTGCCACCAACTCGTATGTGC-TTGAAAAGAAAAATGCGTCTTGCTCT
65 GAGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2151911 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCATTGAAATGAAAAATGTGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* *
2151976 AGGACTAAAAGGTGCCA-CAACTCGTGTGGGC-TTGAAAAGAAAAAGGTGTCCTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152033 TTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * * *
2152098 AGGCCTAAAAAGTGCCACCAACTCATATGTGC-TTGAAAAGAAAAAGGCGGCTTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * ** * *
2152156 TTAAGGACTAAAAGGTACCACCAACTTGTGTGGGCTTTG-AAATCAAAAGCGTGTCCTGCTTTTT
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAG-GCGTCCTGCTCTTT
* * *
2152220 GAGGACT-AAAGTGTGCCACCAACTCTTGTGGGCTTTGAAAAGAAAAAGGTGTCCTACTCT
65 GAGGACTAAAAG-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * *
2152280 TTGAGGACTAAAAGGTGCCACCAACTCCTGTAGGC-TTGAAAAGGAAAAGGCGTCCTACTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
*
2152344 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGTAG-CCTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGG-CGTCCTGCTCT
* * *
2152403 TTAAGGACTAAAAGGTGCCACCAACTCATGTGGGC-TTGAAAAGAAAAAGGCATCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* *
2152467 AGGACT-AAAGAGTGCCACCAACTCGTGTGGGCTTTGAAAAG-AAAAGGAGTCCTGCTCT
66 AGGACTAAAAG-GTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
* * * * ** * * *
2152525 CTGAGGACTAAAAAGTCCCACCAACTCGTATATGC-TTGGAAAGAAAAATGCGTCTTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * *
2152589 AGGACTAAAAGGTGCCACCAACTCGTGTGGCCTTTGAAATGAAAAATGTGTCCTGCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152648 TTGAGGACTAAAAGGTGCCA-CAACTCGTGTGGGC-TTGAAAAGAAAAAGGTGTCCTGCTCTTTG
1 TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
* * * * * * * *
2152711 AGGACTAAAGGGTGCCACCAACTCGTGTGGGATTTTAAATGAAAAACGTGTCCTCCTCT
66 AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
*
2152770 TTGAGGGCTAAA
1 TTGAGGACTAAA
2152782 GGGCTAAAAG
Statistics
Matches: 2020, Mismatches: 290, Indels: 76
0.85 0.12 0.03
Matches are distributed among these distances:
121 42 0.02
122 811 0.40
123 861 0.43
124 209 0.10
125 3 0.00
126 1 0.00
128 46 0.02
129 4 0.00
130 4 0.00
132 36 0.02
133 3 0.00
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (124 bp):
TTGAGGACTAAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCTTTG
AGGACTAAAAGGTGCCACCAACTCATGTGGGCTTTGAAAAGAAAAAGGCGTCCTGCTCT
Found at i:2158744 original size:23 final size:22
Alignment explanation
Indices: 2158701--2158749 Score: 53
Period size: 23 Copynumber: 2.2 Consensus size: 22
2158691 TAAAACAAAG
**
2158701 AAAATAATAAACAAATTTACAC
1 AAAATAATAAACAAAAATACAC
* *
2158723 AAAATAAATACACAAAAATACAT
1 AAAAT-AATAAACAAAAATACAC
2158746 AAAA
1 AAAA
2158750 AGGAGGGACG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 5 0.23
23 17 0.77
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.18
Consensus pattern (22 bp):
AAAATAATAAACAAAAATACAC
Found at i:2159067 original size:51 final size:51
Alignment explanation
Indices: 2159009--2159127 Score: 143
Period size: 51 Copynumber: 2.3 Consensus size: 51
2158999 TCGAAAATAA
* *
2159009 CGGGGTTGGAGTAT-CCTCGATGGTGGAAAATTGATGTTTT-GAAAATAAAAC
1 CGGGGTTGGAGTATCCCT-GATGATGGAAAATCGATGTTTTAG-AAATAAAAC
* ** *
2159060 CGGGGTTGGAGTATCCCTGATTATGGGTAATCGATGTTTTAGAAATAAAGC
1 CGGGGTTGGAGTATCCCTGATGATGGAAAATCGATGTTTTAGAAATAAAAC
*
2159111 CGAGGTTGGAGTATCCC
1 CGGGGTTGGAGTATCCC
2159128 CTCGAAAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
51 55 0.93
52 4 0.07
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCTGATGATGGAAAATCGATGTTTTAGAAATAAAAC
Found at i:2159184 original size:79 final size:79
Alignment explanation
Indices: 2159060--2159505 Score: 377
Period size: 79 Copynumber: 5.6 Consensus size: 79
2159050 AAAATAAAAC
* * ** * **
2159060 CGGGGTTGGAGTA-TCCCTGATTATGGGTAATCGATGTTTTAGAAATAAAGCCGAGGTTGGAGTA
1 CGGGGTTAGAGTATTCCC-GATTGTGGAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTA
2159124 TCCCCTCGAAAATAA
65 TCCCCTCGAAAATAA
* * ** * *
2159139 TGGAGTTAGAGTATTAGCGATGGTGGAAAATCGATGTTTTGGAAATAAAA-CGAGGTTGAAGTAT
1 CGGGGTTAGAGTATTCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTAT
*
2159203 CCCCTCAAAAATAA
66 CCCCTCGAAAATAA
* * * *
2159217 CGGGATTAGAGTA-TCCTCGATTATGGAAAATCAATGTTTT-AAATATAAAATCGAGGTTGGAGT
1 CGGGGTTAGAGTATTCC-CGATTGTGGAAAATCGATGTTTTGGAA-ATAAAATCGAGGTTGGAGT
* *
2159280 ATCTCCT-TATAAATAA
64 ATCCCCTCGA-AAATAA
* *
2159296 CGGGGTTAGAGTA-TCCCGGATTGTGGAAAATTGATGTTTTGGAAATAAAAATCGAGATTGGAGT
1 CGGGGTTAGAGTATTCCC-GATTGTGGAAAATCGATGTTTTGGAAAT-AAAATCGAGGTTGGAGT
* *
2159360 ATCTCCTTAGAAAA-AA
64 ATC-CCCTCGAAAATAA
* * * * * * * *
2159376 TGGGGTTAGAGTATTCCCCAATTATGGAAAATCAATATTTTAGACATAAAAACTGAGGTTGGAGT
1 CGGGGTTAGAGTATT-CCCGATTGTGGAAAATCGATGTTTTGGAAATAAAATC-GAGGTTGGAGT
* *
2159441 ATCCCTTCGGAAATAA
64 ATCCCCTCGAAAATAA
* * * * * * * *
2159457 CGAGGTTGGAGTATCCCCAATGGCGGAAAAT-TATATTTTGGAAATAAAA
1 CGGGGTTAGAGTATTCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAA
2159506 ACATCGATGA
Statistics
Matches: 297, Mismatches: 56, Indels: 28
0.78 0.15 0.07
Matches are distributed among these distances:
77 3 0.01
78 64 0.22
79 110 0.37
80 63 0.21
81 53 0.18
82 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (79 bp):
CGGGGTTAGAGTATTCCCGATTGTGGAAAATCGATGTTTTGGAAATAAAATCGAGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:2161908 original size:51 final size:50
Alignment explanation
Indices: 2161832--2161966 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 50
2161822 AAAATGCCTG
* *
2161832 AATGTATCGATACATTG-AGAAATGTATCGATACATTTAGGTAAAACCCATA
1 AATGTATCGATACAATGAAG-AATGTATCGATACATCTAGGTAAAACCCA-A
* * * * * *
2161883 AATGTATCGATATAATGAAGAATGTATCGATAGATCTGGGTTAAACGCAG
1 AATGTATCGATACAATGAAGAATGTATCGATACATCTAGGTAAAACCCAA
* *
2161933 AATGTATGGATACAATAAAGAATGTATCGATACA
1 AATGTATCGATACAATGAAGAATGTATCGATACA
2161967 AATTGTGAAA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
50 30 0.42
51 39 0.55
52 2 0.03
ACGTcount: A:0.41, C:0.11, G:0.19, T:0.28
Consensus pattern (50 bp):
AATGTATCGATACAATGAAGAATGTATCGATACATCTAGGTAAAACCCAA
Found at i:2173727 original size:60 final size:61
Alignment explanation
Indices: 2173615--2174240 Score: 473
Period size: 60 Copynumber: 10.0 Consensus size: 61
2173605 AACCTTTTAT
* * * *
2173615 CCTTTCAGTCCTCAAAGAGCAGGACA--TTTTCCTTTTTAAAGCCTACATAAGTTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCC-TTTCAAAGCCCACACAAGTTGGTGGCA
* * *
2173675 CCTTTCAGTCATCAAAGAGCAGGACACCTTCTCCTTTCAAAG-CCACACAAGTTGATGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * *
2173735 CCTTTCAATCCTCAAAGAGCATGACGCCTTTTCCTTTCAAAGCTCACACAAGTTGGTAGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
2173796 -CATTCAGTCCTCAAAGAGTAGGACA-C-TTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * ** *
2173854 CCTTCCAGTCTTCAAAGAACAGGATGCCATTTT--TTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACC-TTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * *
2173914 CC-TTCTAGTCCTCAAA-AACTAGGACACTTCTTTTTTTCTTTGAAAGCTCAAACAACTTGGTGG
1 CCTTTC-AGTCCTCAAAGAGC-AGGACAC--C--TTTTCCTTTCAAAGCCCACACAAGTTGGTGG
2173977 CA
60 CA
* * * * * * * * *
2173979 TCTTTTAGTCTTCGAGGAGTAGGACACTTTTTTTTTTTCTTTCAAAGCCCACACAATTTGGTGGC
1 CCTTTCAGTCCTCAAAGAGCAGGACAC-----CTTTTCCTTTCAAAGCCCACACAAGTTGGTGGC
2174044 A
61 A
* * * *
2174045 CCTTTTAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTCAAAGCCCACACATGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * * * ** * * * **
2174106 ACTTTTAGTCCTCGAAGAGTAGGACATTTCTTTTTTTTTTAAAGCCCATACAAGCTGGTAACA
1 CCTTTCAGTCCTCAAAGAGCAGGACA--CCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
** *
2174169 -CTTTCTAGTCCTCAAAGAATAGGACACCTCTCTCCTTTTCTATCTTAAAGCCCACACAAGTTGG
1 CCTTTC-AGTCCTCAAAGAGCAGGACACCT-TTTCC---T-T-TC--AAAGCCCACACAAGTTGG
2174233 TGGCA
57 TGGCA
2174238 CCT
1 CCT
2174241 ATCTACTTCA
Statistics
Matches: 449, Mismatches: 86, Indels: 52
0.76 0.15 0.09
Matches are distributed among these distances:
58 30 0.07
59 24 0.05
60 141 0.31
61 75 0.17
62 15 0.03
63 48 0.11
65 39 0.09
66 53 0.12
67 1 0.00
68 2 0.00
69 19 0.04
70 2 0.00
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (61 bp):
CCTTTCAGTCCTCAAAGAGCAGGACACCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:2173928 original size:179 final size:181
Alignment explanation
Indices: 2173618--2174240 Score: 501
Period size: 179 Copynumber: 3.3 Consensus size: 181
2173608 CTTTTATCCT
* * * * * *
2173618 TTCAGTCCTCAAAGAGCAGGACATTTTCCTTTTTAAAGCCTACATAAGTTGATGGCACCTTTCAG
1 TTCAGTCCTCAAAGAGTAGGACACTTTCC-TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAG
* * * *
2173683 TCATCAAAGAGCAGGACACCTTCTCCTTTCAAAG-CCACACAAGTTGATGGCACCTTTCAATCCT
65 TCATCAAAGAGCAGGACGCCTT-T-TTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCT
* * * *
2173747 CAAAGAGC-ATGACGC-C-TTTTCCTTTCAAAGCTCACACAAGTTGGTAGCA-CA
127 CAAAGAGCTAGGACACTCTTTTTCCTTTCAAAGCTCAAACAACTTGGTAGCATCA
*
2173798 TTCAGTCCTCAAAGAGTAGGACACTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGT
1 TTCAGTCCTCAAAGAGTAGGACACTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
* * * *
2173863 CTTCAAAGAACAGGATGCCATTTTTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCA
66 CATCAAAGAGCAGGACGCC-TTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCA
* * * * *
2173928 AA-AACTAGGACACTTCTTTTTTTCTTTGAAAGCTCAAACAACTTGGTGGCATCT
129 AAGAGCTAGGACAC-TC-TTTTTCCTTTCAAAGCTCAAACAACTTGGTAGCATCA
* * * * * *
2173982 TTTAGTCTTCGAGGAGTAGGACACTTTTTTTTTTTCTTTCAAAGCCCACACAATTTGGTGGCACC
1 TTCAGTCCTCAAAGAGTAGGACAC-------TTTCCTTTCAAAGCCCACACAAGTTGGTGGCACC
* * * * *
2174047 TTTTAGTCCTCAAAGAGCAGAACGCCTTTTCCTTTCAAAGCCCACACATGTTGGTGGCAACTTTT
59 TTTCAGTCATCAAAGAGCAGGACGCCTTTT--TTTCAAAGCCCACACAAGTTGGTGGC-ACCTTT
* * * * * * * *
2174112 AGTCCTCGAAGAG-TAGGACATTTCTTTTT-TTTTTAAAGCCCATACAAGC-TGGTAACA-CT
121 AGTCCTCAAAGAGCTAGGACA-CTCTTTTTCCTTTCAAAGCTCAAACAA-CTTGGTAGCATCA
*
2174171 TTCTAGTCCTCAAAGAATAGGACACCTCTCTCCTTTTCTATCTTAAAGCCCACACAAGTTGGTGG
1 TTC-AGTCCTCAAAGAGTAGGACA-CT-T-TCC---T-T-TC--AAAGCCCACACAAGTTGGTGG
2174236 CACCT
55 CACCT
2174241 ATCTACTTCA
Statistics
Matches: 355, Mismatches: 55, Indels: 53
0.77 0.12 0.11
Matches are distributed among these distances:
178 9 0.03
179 82 0.23
180 30 0.08
181 1 0.00
183 28 0.08
184 22 0.06
185 1 0.00
186 2 0.01
189 5 0.01
190 41 0.12
191 61 0.17
192 43 0.12
193 30 0.08
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (181 bp):
TTCAGTCCTCAAAGAGTAGGACACTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
CATCAAAGAGCAGGACGCCTTTTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAA
GAGCTAGGACACTCTTTTTCCTTTCAAAGCTCAAACAACTTGGTAGCATCA
Found at i:2173978 original size:65 final size:64
Alignment explanation
Indices: 2173826--2174245 Score: 308
Period size: 65 Copynumber: 6.5 Consensus size: 64
2173816 GGACACTTTC
* * * **
2173826 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCTTCAAAGAAC-AGG--A-TGCCATTTT
1 CTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA-AACTAGGACACTTCTTTTTT
2173887 T
64 T
2173888 -TTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACACTTCTTTTTTT
1 CTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACACTTCTTTTTTT
* * * * * * * ** * *
2173951 CTTTGAAAGCTCAAACAACTTGGTGGCATCTTTTAGTCTTCGAGGAGTAGGACACTTTTTTTTTT
1 CTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACAC-TTCTTTTTT
2174016 T
64 T
* * * * *
2174017 CTTTCAAAGCCCACACAATTTGGTGGCACCTTTTAGTCCTCAAAGAGC-A-GA-AC-GC-CTTTT
1 CTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA-AACTAGGACACTTCTTTTTT
*
2174077 C
64 T
* * * * * * *
2174078 CTTTCAAAGCCCACACATGTTGGTGGCAACTTTTAGTCCTCGAAGAGTAGGACATTTCTTTTTTT
1 CTTT-AAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACACTTCTTTTTTT
* * ** *
2174143 -TTTAAAGCCCATACAAGCTGGTAACACTTTCTAGTCCTCAAAGAA-TAGGACACCTCTCTCCTT
1 CTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAA-AACTAGGACA-CT-TCT--TT
2174206 TTCTAT
61 TT-T-T
2174212 C-TTAAAGCCCACACAAGTTGGTGGCACCTATCTA
1 CTTTAAAGCCCACACAAGTTGGTGGCACCT-TCTA
2174246 CTTCAACCTT
Statistics
Matches: 278, Mismatches: 58, Indels: 36
0.75 0.16 0.10
Matches are distributed among these distances:
59 3 0.01
60 40 0.14
61 48 0.17
62 3 0.01
63 45 0.16
64 11 0.04
65 49 0.18
66 46 0.17
67 4 0.01
68 1 0.00
69 24 0.09
70 4 0.01
ACGTcount: A:0.26, C:0.25, G:0.16, T:0.32
Consensus pattern (64 bp):
CTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACACTTCTTTTTTT
Found at i:2173991 original size:125 final size:118
Alignment explanation
Indices: 2173647--2173942 Score: 292
Period size: 119 Copynumber: 2.5 Consensus size: 118
2173637 GACATTTTCC
* * * * * * *
2173647 TTTTTAAAGCCTACATAAGTTGATGGCACCTTTCAGTCATCAAAGAGC-AGGACACCTTCTCCTT
1 TTTTTAAAGCCCACACAAGTTGGTAGCA-CATTCAGTCCTCAAA-AACTAGGACA-CTT-TCCTT
* * * * * * * * *
2173711 TCAAAG-CCACACAAGTTGATGGCACCTTTCAATCCTCAAAGAGCATGACGCC-TTT
62 TCAAAGCCCAAACAACTTGGTGGCACCTTCCAGTCTTCAAAGAACAGGATGCCATTT
* * * *
2173766 TCCTTTCAAAGCTCACACAAGTTGGTAGCACATTCAGTCCTCAAAGAGTAGGACACTTTCCTTTC
1 T--TTTTAAAGCCCACACAAGTTGGTAGCACATTCAGTCCTCAAAAACTAGGACACTTTCCTTTC
* *
2173831 AAAGCCCACACAAGTTGGTGGCACCTTCCAGTCTTCAAAGAACAGGATGCCATTT
64 AAAGCCCAAACAACTTGGTGGCACCTTCCAGTCTTCAAAGAACAGGATGCCATTT
* *
2173886 TTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAAACTAGGACACTT
1 TTTTTAAAGCCCACACAAGTTGGTAGCACATTC-AGTCCTCAAAAACTAGGACACTT
2173943 CTTTTTTTCT
Statistics
Matches: 147, Mismatches: 24, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
118 39 0.27
119 64 0.44
120 23 0.16
121 21 0.14
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (118 bp):
TTTTTAAAGCCCACACAAGTTGGTAGCACATTCAGTCCTCAAAAACTAGGACACTTTCCTTTCAA
AGCCCAAACAACTTGGTGGCACCTTCCAGTCTTCAAAGAACAGGATGCCATTT
Found at i:2177352 original size:51 final size:51
Alignment explanation
Indices: 2177288--2177402 Score: 144
Period size: 51 Copynumber: 2.3 Consensus size: 51
2177278 ATTTTTGAAG
**
2177288 GGATAC-TCTAACCTCGGTTTTATTTCTAAAACA-CTGATTTTCTGCCATCGA
1 GGATACTTC-AACCTCGGTTTTATTTCTAAAACATC-GATTTTCCACCATCGA
* * *
2177339 GGATACTTCAACCTTGGTTTTATTTCTACAACATCGATTTTCCACCATCGG
1 GGATACTTCAACCTCGGTTTTATTTCTAAAACATCGATTTTCCACCATCGA
*
2177390 GGATACTCCAACC
1 GGATACTTCAACC
2177403 CCGTTATTTT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
51 53 0.95
52 3 0.05
ACGTcount: A:0.25, C:0.26, G:0.14, T:0.35
Consensus pattern (51 bp):
GGATACTTCAACCTCGGTTTTATTTCTAAAACATCGATTTTCCACCATCGA
Found at i:2177419 original size:130 final size:129
Alignment explanation
Indices: 2177246--2177479 Score: 346
Period size: 130 Copynumber: 1.8 Consensus size: 129
2177236 AAAACACCAA
* * * *
2177246 ATTTTCACGATCGAGGATACTCCAACCTCGTTATTTTTGAAGGGATACTCTAACCTCGGTTTTAT
1 ATTTTCACCATCGAGGATACTCCAACCCCGTTATTTTTGAAGGGATACTCCAACCTCGATTTTAT
**
2177311 TTCTAAAACA-CTGATTTTCTGCCATCGAGGATACTTCAACCTTGGTTTTATTTCTACAACATCG
66 TTCTAAAACATC-GATTTTCCACCATCGAGGATACTTCAACCTTGGTTTTATTTCTACAACATCG
*
2177375 ATTTTCCACCATCGGGGATACTCCAACCCCGTTA-TTTTGAAAGGGATACTCCAACCTCGATTTT
1 ATTTT-CACCATCGAGGATACTCCAACCCCGTTATTTTTG-AAGGGATACTCCAACCTCGATTTT
* *
2177439 ATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAA
64 ATTTCTAAAACATCGATTTTCCACCATCGAGGATACTTCAA
2177480 TCTCGTTATT
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
129 10 0.11
130 82 0.88
131 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.35
Consensus pattern (129 bp):
ATTTTCACCATCGAGGATACTCCAACCCCGTTATTTTTGAAGGGATACTCCAACCTCGATTTTAT
TTCTAAAACATCGATTTTCCACCATCGAGGATACTTCAACCTTGGTTTTATTTCTACAACATCG
Found at i:2177593 original size:78 final size:79
Alignment explanation
Indices: 2177356--2177594 Score: 329
Period size: 79 Copynumber: 3.0 Consensus size: 79
2177346 TCAACCTTGG
* *
2177356 TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTA-TTTTGAAAGGG
1 TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTG-AGGGG
*
2177420 ATACTCCAACCTCGA
65 ATACTCCAACCTCAA
* *
2177435 TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAATCTCGTTATTTTTGAGGGGA
1 TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGA
2177500 TACTCCAACCTCAA
66 TACTCCAACCTCAA
* * * * ** *
2177514 TTTTATTTCTAAAACATTGATTTTGCACCAAC-AAGATACTTTAACCCCGTTATTTTTGAGGGGA
1 TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGA
* *
2177578 TACTCTAACCCCAA
66 TACTCCAACCTCAA
2177592 TTT
1 TTT
2177595 GTTTCCAAAT
Statistics
Matches: 143, Mismatches: 16, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
78 42 0.29
79 96 0.67
80 5 0.03
ACGTcount: A:0.27, C:0.24, G:0.13, T:0.36
Consensus pattern (79 bp):
TTTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGA
TACTCCAACCTCAA
Found at i:2177630 original size:78 final size:77
Alignment explanation
Indices: 2177357--2177639 Score: 284
Period size: 79 Copynumber: 3.6 Consensus size: 77
2177347 CAACCTTGGT
* * *
2177357 TTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTA-TTTTGAAAGGGA
1 TTTATTTCTA-AACATAGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTG-AGGGGA
* *
2177421 TACTCCAACCTCGAT
64 TACTCCAACC-CCAA
* * *
2177436 TTTATTTCTACAACATCGATTTTCCACCATCGGGGATACTTCAATCTCGTTATTTTTGAGGGGAT
1 TTTATTTCTA-AACATAGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGAT
*
2177501 ACTCCAACCTCAA
65 ACTCCAACCCCAA
* * * ** *
2177514 TTTTATTTCTAAAACATTGATTTTGCACCAAC-AAGATACTTTAACCCCGTTATTTTTGAGGGGA
1 -TTTATTTCT-AAACATAGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGA
*
2177578 TACTCTAACCCCAA
64 TACTCCAACCCCAA
* * * * *
2177592 TTTGTTTCCAAATTATAGACTTTT-TACCATCGGGGATACTCCAACCCC
1 TTTATTTCTAAA-CATAGA-TTTTCCACCATCGGGGATACTTCAACCCC
2177640 ATTTTTATTT
Statistics
Matches: 171, Mismatches: 27, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
76 3 0.02
77 16 0.09
78 56 0.33
79 90 0.53
80 6 0.04
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (77 bp):
TTTATTTCTAAACATAGATTTTCCACCATCGGGGATACTTCAACCCCGTTATTTTTGAGGGGATA
CTCCAACCCCAA
Found at i:2177678 original size:51 final size:51
Alignment explanation
Indices: 2177573--2177693 Score: 149
Period size: 51 Copynumber: 2.4 Consensus size: 51
2177563 TTATTTTTGA
* * *
2177573 GGGGATACTCTAACCCCA-ATTTGTTTCCAAATTATAGACTTTTTACCATC
1 GGGGATACTCTAACCCCATTTTTATTTCCAAAATATAGACTTTTTACCATC
* *
2177623 GGGGATACTCCAACCCCATTTTTATTTCCAAAATATCA-A-TTTTTCACCATT
1 GGGGATACTCTAACCCCATTTTTATTTCCAAAATAT-AGACTTTTT-ACCATC
*
2177674 GGGGATACTTTAACCCCATT
1 GGGGATACTCTAACCCCATT
2177694 ATTTTTGTGA
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
50 22 0.36
51 38 0.62
52 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.12, T:0.36
Consensus pattern (51 bp):
GGGGATACTCTAACCCCATTTTTATTTCCAAAATATAGACTTTTTACCATC
Found at i:2177731 original size:129 final size:128
Alignment explanation
Indices: 2177495--2177732 Score: 271
Period size: 129 Copynumber: 1.9 Consensus size: 128
2177485 TTATTTTTGA
* * **
2177495 GGGGATACTCCAACCTCAATTTTATTTCTAAAACATTGATTTTGCACCAACAAGATACTTTAACC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTGCACCAACAAGATACTTTAACC
* * * * *
2177560 CCGTTATTTTTGAGGGGATACTCTAACCCCAATTTGTTTCCAAATTATAGACTTTTTACCATC
66 CCATTATTTTTGAGAGAATACTCTAACCCCAATTTATCTCCAAATTATAGACTTTTTACCATC
* * * ****
2177623 GGGGATACTCCAACCCCATTTTTATTTCCAAAATATCAATTTTTCACCATTGGGGATACTTTAAC
1 GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTGCACCA-ACAAGATACTTTAAC
* ***
2177688 CCCATTATTTTTGTGAGAATACT-TCAACCCTTTTTTATCTCCAAA
65 CCCATTATTTTTGAGAGAATACTCT-AACCCCAATTTATCTCCAAA
2177733 ATATTAAATT
Statistics
Matches: 88, Mismatches: 20, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
128 43 0.49
129 45 0.51
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (128 bp):
GGGGATACTCCAACCCCAATTTTATTTCCAAAACATCAATTTTGCACCAACAAGATACTTTAACC
CCATTATTTTTGAGAGAATACTCTAACCCCAATTTATCTCCAAATTATAGACTTTTTACCATC
Found at i:2178909 original size:79 final size:78
Alignment explanation
Indices: 2178776--2178941 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 78
2178766 ATGAAAATCA
* **
2178776 GGGTTGGAGTATCCCTTCGAAAATAGTGGAGTTGGAGTATCCCCAAGATGAAAAAAAT-AATAAA
1 GGGTTGGAATATCCCCACGAAAATAGTGGAGTTGGAGTATCCCC-AGATG-AAAAAATCAATAAA
* *
2178840 TTGGAAGTAAAAATG
64 TTGGAAATAAAAACG
* *
2178855 GGGTTGGAATATCCCCACGAAAAT-GATGGAGTTGGAGTATCCTC-GATGGTAAAAAATCAATAT
1 GGGTTGGAATATCCCCACGAAAATAG-TGGAGTTGGAGTATCCCCAGAT-G-AAAAAATCAATAA
*
2178918 TTTGGAAATAAAAACG
63 ATTGGAAATAAAAACG
2178934 GGGTTGGA
1 GGGTTGGA
2178942 GTATTCTTGG
Statistics
Matches: 75, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
77 3 0.04
78 9 0.12
79 63 0.84
ACGTcount: A:0.38, C:0.11, G:0.27, T:0.25
Consensus pattern (78 bp):
GGGTTGGAATATCCCCACGAAAATAGTGGAGTTGGAGTATCCCCAGATGAAAAAATCAATAAATT
GGAAATAAAAACG
Found at i:2181420 original size:20 final size:20
Alignment explanation
Indices: 2181392--2181440 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
2181382 ACCCAGAATG
* *
2181392 TATCGATACAACGAAAAATA
1 TATCAATACAAAGAAAAATA
* *
2181412 TATCAATACAAAGAAAAGTG
1 TATCAATACAAAGAAAAATA
2181432 TATCAATAC
1 TATCAATAC
2181441 GTTTTCTTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.53, C:0.14, G:0.10, T:0.22
Consensus pattern (20 bp):
TATCAATACAAAGAAAAATA
Found at i:2181540 original size:20 final size:20
Alignment explanation
Indices: 2181500--2181553 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
2181490 CATTTCAAGG
*
2181500 ATGTATCAATACATTCACTT
1 ATGTATCGATACATTCACTT
2181520 ATGTATCGATACATT-ACCTT
1 ATGTATCGATACATTCA-CTT
*
2181540 ATTTTATCGATACA
1 A-TGTATCGATACA
2181554 AACTATTGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 1 0.03
20 18 0.60
21 11 0.37
ACGTcount: A:0.33, C:0.19, G:0.07, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTCACTT
Found at i:2184332 original size:13 final size:13
Alignment explanation
Indices: 2184314--2184339 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2184304 CAATTTTTTG
2184314 TGTATCGATACAT
1 TGTATCGATACAT
2184327 TGTATCGATACAT
1 TGTATCGATACAT
2184340 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2189070 original size:13 final size:13
Alignment explanation
Indices: 2189052--2189077 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2189042 TACACAAAGT
2189052 ATGTATCGATACA
1 ATGTATCGATACA
2189065 ATGTATCGATACA
1 ATGTATCGATACA
2189078 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2189075 original size:32 final size:33
Alignment explanation
Indices: 2189034--2189097 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2189024 TAGCCAAACT
**
2189034 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2189066 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2189098 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2189598 original size:34 final size:35
Alignment explanation
Indices: 2189535--2189601 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2189525 CTAAGTGATT
2189535 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGGGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGGGA
2189571 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2189602 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGGGA
Found at i:2194319 original size:13 final size:13
Alignment explanation
Indices: 2194301--2194326 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2194291 TACACAAAGT
2194301 ATGTATCGATACA
1 ATGTATCGATACA
2194314 ATGTATCGATACA
1 ATGTATCGATACA
2194327 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2194324 original size:32 final size:33
Alignment explanation
Indices: 2194283--2194346 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2194273 TAGCCAAATT
**
2194283 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
2194315 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
2194347 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:2194847 original size:34 final size:35
Alignment explanation
Indices: 2194784--2194850 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
2194774 CTAAGTGATT
2194784 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
2194820 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
2194851 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:2197257 original size:21 final size:21
Alignment explanation
Indices: 2197228--2197272 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
2197218 AAGTTTTCAT
*
2197228 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
2197248 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
2197270 TTT
1 TTT
2197273 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:2201336 original size:13 final size:13
Alignment explanation
Indices: 2201318--2201343 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2201308 CAATTTTTTG
2201318 TGTATCGATACAT
1 TGTATCGATACAT
2201331 TGTATCGATACAT
1 TGTATCGATACAT
2201344 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2203903 original size:13 final size:13
Alignment explanation
Indices: 2203885--2203923 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
2203875 ATAATCACCC
*
2203885 TGTATCGATACAG
1 TGTATCGATACAA
2203898 TGTATCGATACAA
1 TGTATCGATACAA
2203911 TGTATCGATACAA
1 TGTATCGATACAA
2203924 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2203934 original size:20 final size:20
Alignment explanation
Indices: 2203909--2203987 Score: 68
Period size: 20 Copynumber: 3.7 Consensus size: 20
2203899 GTATCGATAC
2203909 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
* *
2203929 AATGTATCAATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
2203954 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
2203974 CATGTATCGATACA
1 AATGTATCGATACA
2203988 TTTTGGACAT
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
20 31 0.65
25 17 0.35
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Done.