Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3567220
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 20 of 22
Found at i:3210330 original size:79 final size:79
Alignment explanation
Indices: 3210238--3210423 Score: 194
Period size: 79 Copynumber: 2.4 Consensus size: 79
3210228 AATTTTAATA
* * * *
3210238 TTTTGGAGATAAAAATGGGGTCGGAGTACCCCCTTAAAAATAACAAGATTGGAGTATCTCCAATC
1 TTTTGGAAATAAAAATGGGGTTGGAGTACCCCCTCAAAAATAACAAGATTGGAGTATCCCCAATC
3210303 GTGAAAAATTGATG
66 GTGAAAAATTGATG
* * * ** * * *
3210317 TTTTGGAAAT-AAAATCGAGGTTGAAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCGAT
1 TTTTGGAAATAAAAAT-GGGGTTGGAGTACCCCCTCAAAAATAACAAGATTGGAGTATCCCCAAT
* * *
3210381 TGTGGAAAATTGGTG
65 CGTGAAAAATTGATG
* **
3210396 TTTTAGAAATAAAACCGGGGTTGGAGTA
1 TTTTGGAAATAAAAATGGGGTTGGAGTA
3210424 TCCTCGATTG
Statistics
Matches: 85, Mismatches: 20, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
78 5 0.06
79 77 0.91
80 3 0.04
ACGTcount: A:0.34, C:0.13, G:0.26, T:0.27
Consensus pattern (79 bp):
TTTTGGAAATAAAAATGGGGTTGGAGTACCCCCTCAAAAATAACAAGATTGGAGTATCCCCAATC
GTGAAAAATTGATG
Found at i:3210424 original size:79 final size:79
Alignment explanation
Indices: 3210275--3210426 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 79
3210265 ACCCCCTTAA
* * *
3210275 AAATAACAAGATTGGAGTATCTCCAATCGTGAAAAATTGATGTTTTGGAAATAAAATCGAGGTTG
1 AAATAACAAGATTGGAGTATCCCCAATCGTGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTG
3210340 AAGTATCCCCTCGG
66 AAGTATCCCCTCGG
* * * * * * *
3210354 AAATAACAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCGGGGTTG
1 AAATAACAAGATTGGAGTATCCCCAATCGTGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTG
*
3210419 GAGTATCC
66 AAGTATCC
3210427 TCGATTGTGG
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 62 1.00
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (79 bp):
AAATAACAAGATTGGAGTATCCCCAATCGTGAAAAATTGATGTTTTAGAAATAAAACCGAGGTTG
AAGTATCCCCTCGG
Found at i:3210426 original size:51 final size:51
Alignment explanation
Indices: 3210360--3210476 Score: 189
Period size: 51 Copynumber: 2.3 Consensus size: 51
3210350 TCGGAAATAA
*
3210360 CAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAAC
1 CAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAAC
* * *
3210411 CGGGGTTGGAGTATCCTCGATTGTGGAAAATTGGTATTTTGGAAATAAAAC
1 CAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAAC
*
3210462 CAGGGATGGAGTATC
1 CAGGGTTGGAGTATC
3210477 TCCTCAGAAA
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
51 60 1.00
ACGTcount: A:0.30, C:0.11, G:0.30, T:0.29
Consensus pattern (51 bp):
CAGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTATTTTAGAAATAAAAC
Found at i:3210603 original size:50 final size:50
Alignment explanation
Indices: 3210492--3210606 Score: 151
Period size: 50 Copynumber: 2.3 Consensus size: 50
3210482 AGAAATAACA
3210492 GGGTTAGAGTATTCCTGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCG
1 GGGTTAGAGTA-TCCTGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCG
* * * **
3210543 AGGTTAGAGTATCCTCGATTGTG-AAGATTGGTGTTTTGGAAATAAAATTG
1 GGGTTAGAGTATCCT-GATTGTGAAAAATTAGTGTTTTGGAAATAAAACCG
*
3210593 GGGTTGGAGTATCC
1 GGGTTAGAGTATCC
3210607 CTTCAAAAAT
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
50 39 0.70
51 17 0.30
ACGTcount: A:0.30, C:0.08, G:0.29, T:0.34
Consensus pattern (50 bp):
GGGTTAGAGTATCCTGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCG
Found at i:3210641 original size:129 final size:129
Alignment explanation
Indices: 3210307--3210687 Score: 487
Period size: 130 Copynumber: 2.9 Consensus size: 129
3210297 CCAATCGTGA
* * * * *
3210307 AAAATTGATGTTTTGGAAATAAAATCGAGGTTGAAGTATCCCCTCGGAAATAACAGGGTTGGAGT
1 AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTAT-CCCTCAGAAATAACAGGGTTGAAGT
* *
3210372 ATCCCCGATTGTGGAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGTATCCTCGATTGTGG
65 ATCCCCGATTGTGGAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCTCGATTGTGG
* * * *
3210437 AAAATTGGTATTTTGGAAATAAAACCAGGGATGGAGTATCTCCTCAGAAATAACAGGGTT-AGAG
1 AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATC-CCTCAGAAATAACAGGGTTGA-AG
* * * * *
3210501 TATTCCTGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCGAGGTTAGAGTATCCTCGATTGT-
64 TATCCCCGATTGTGGAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCTCGATTGTG
3210565 G
129 G
* * * ** *
3210566 AAGATTGGTGTTTTGGAAATAAAATTGGGGTTGGAGTATCCCTTCAAAAATAATGGGGTTGAAGC
1 AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCC-TCAGAAATAACAGGGTTGAAGT
* * *
3210631 ATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAAGGTTGGAGTGTCCTC
65 ATCCCCGATTGTGGAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCTC
3210688 TCGAAAATAA
Statistics
Matches: 213, Mismatches: 34, Indels: 9
0.83 0.13 0.04
Matches are distributed among these distances:
128 2 0.01
129 101 0.47
130 110 0.52
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (129 bp):
AAAATTGGTGTTTTGGAAATAAAATCGGGGTTGGAGTATCCCTCAGAAATAACAGGGTTGAAGTA
TCCCCGATTGTGGAAAATTGGTGTTTTGGAAATAAAACCGAGGTTGGAGTATCCTCGATTGTGG
Found at i:3210665 original size:79 final size:80
Alignment explanation
Indices: 3210544--3210935 Score: 422
Period size: 79 Copynumber: 5.0 Consensus size: 80
3210534 ATAAAACCGA
* * * **
3210544 GGTTAGAGTATCCTCGATTGT-GAAGATTGGTGTTTTGGAAATAAAATTGGGGTTGGAGTATCCC
1 GGTTAGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
* *
3210608 T-TCAAAAATAATGG
66 TCTCGAAAATAACGG
* ** *
3210622 GGTT-GAAGCATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCAAGGTTGGAGTGT-C
1 GGTTAG-AGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCC
3210685 CTCTCGAAAATAACGG
65 CTCTCGAAAATAACGG
* * * * ** *
3210701 GGTTAGAGTATCCCTGATTATGAAAAATTGGTGTCTTGAAAATAAAACCGAAGTTGGACTATCCC
1 GGTTAGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
* * *
3210766 T-TCGGAAATAATGA
66 TCTCGAAAATAACGG
* **
3210780 GGTT-GAAGTATCCCCTGATTATGGAAAATTGGTGTTTTGAAAATAAAATTGGGGTTGGAGTAT-
1 GGTTAG-AGTATCCCC-GATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATC
*
3210843 CCTCTCGGAAATAACGG
64 CCTCTCGAAAATAACGG
* * * * *
3210860 GGTTAGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAACCAGAGTTGGAGTATCCC
1 GGTTAGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
*
3210925 -CTCGGAAATAA
66 TCTCGAAAATAA
3210936 AAACATGAAT
Statistics
Matches: 263, Mismatches: 41, Indels: 19
0.81 0.13 0.06
Matches are distributed among these distances:
77 1 0.00
78 21 0.08
79 170 0.65
80 70 0.27
81 1 0.00
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (80 bp):
GGTTAGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCC
TCTCGAAAATAACGG
Found at i:3210859 original size:159 final size:158
Alignment explanation
Indices: 3210544--3210935 Score: 529
Period size: 159 Copynumber: 2.5 Consensus size: 158
3210534 ATAAAACCGA
* ** **
3210544 GGTTAGAGTAT-CCTCGATTGTG-AAGATTGGTGTTTTGGAAATAAAATTGGGGTTGGAGTATCC
1 GGTTAGAGTATCCCT-GATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAAGTTGGAGTATCC
** * *
3210607 CTTCAAAAATAATGGGGTTGAAGCATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAACCA
65 CTTCGGAAATAATGAGGTTGAAGCATCCCCGATTATGGAAAATTGGTGTTTTGAAAATAAAACCA
*
3210672 AGGTTGGAGTGTCCTCTCGAAAATAACGG
130 AGGTTGGAGTATCCTCTCGAAAATAACGG
* * * *
3210701 GGTTAGAGTATCCCTGATTATGAAAAATTGGTGTCTTGAAAATAAAACCGAAGTTGGACTATCCC
1 GGTTAGAGTATCCCTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAAGTTGGAGTATCCC
* ***
3210766 TTCGGAAATAATGAGGTTGAAGTATCCCCTGATTATGGAAAATTGGTGTTTTGAAAATAAAATTG
66 TTCGGAAATAATGAGGTTGAAGCATCCCC-GATTATGGAAAATTGGTGTTTTGAAAATAAAACCA
* *
3210831 GGGTTGGAGTATCCTCTCGGAAATAACGG
130 AGGTTGGAGTATCCTCTCGAAAATAACGG
**
3210860 GGTTAGAGTATCCCCAATTGTGAAAAATTGGTGTTTTGGAAATAAAACC-AGAGTTGGAGTATCC
1 GGTTAGAGTATCCCTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGA-AGTTGGAGTATCC
*
3210924 CCTCGGAAATAA
65 CTTCGGAAATAA
3210936 AAACATGAAT
Statistics
Matches: 204, Mismatches: 27, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
157 17 0.08
158 63 0.31
159 124 0.61
ACGTcount: A:0.32, C:0.13, G:0.26, T:0.30
Consensus pattern (158 bp):
GGTTAGAGTATCCCTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACCGAAGTTGGAGTATCCC
TTCGGAAATAATGAGGTTGAAGCATCCCCGATTATGGAAAATTGGTGTTTTGAAAATAAAACCAA
GGTTGGAGTATCCTCTCGAAAATAACGG
Found at i:3211818 original size:35 final size:36
Alignment explanation
Indices: 3211772--3211839 Score: 113
Period size: 36 Copynumber: 1.9 Consensus size: 36
3211762 TCCAATTATA
3211772 TCCCTATC-TTTTCACAA-GCTAAGATAGAACCTTAC
1 TCCCTATCTTTTTCA-AAGGCTAAGATAGAACCTTAC
3211807 TCCCTATCTTTTTCAAAGGCTAAGATAGAACCT
1 TCCCTATCTTTTTCAAAGGCTAAGATAGAACCT
3211840 CTCAATTACT
Statistics
Matches: 31, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
35 10 0.32
36 21 0.68
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.32
Consensus pattern (36 bp):
TCCCTATCTTTTTCAAAGGCTAAGATAGAACCTTAC
Found at i:3213977 original size:28 final size:28
Alignment explanation
Indices: 3213918--3213984 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
3213908 TGAAGGTGAT
** *
3213918 TGATACCAATTGTTGCCAATTGATGAAA
1 TGATACCAATTGTTGAAAATTAATGAAA
*
3213946 TGATACCAATTGTTGAAAGATTAATG-AG
1 TGATACCAATTGTTGAAA-ATTAATGAAA
3213974 TGATACCAATT
1 TGATACCAATT
3213985 TTTTAATGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 28 0.82
29 6 0.18
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (28 bp):
TGATACCAATTGTTGAAAATTAATGAAA
Found at i:3214124 original size:13 final size:13
Alignment explanation
Indices: 3214103--3214141 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
3214093 CATACTGAAG
3214103 CAATGTATCGATA
1 CAATGTATCGATA
* *
3214116 CATTGTATCAATA
1 CAATGTATCGATA
3214129 CAATGTATCGATA
1 CAATGTATCGATA
3214142 TAAATTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:3215397 original size:21 final size:21
Alignment explanation
Indices: 3215373--3215431 Score: 77
Period size: 21 Copynumber: 2.8 Consensus size: 21
3215363 TTTTATTAGT
*
3215373 CAACTCA-TCATTTTCATTTTG
1 CAACTCATTCATTTTC-TTTTC
3215394 CAACTCATTTC-TTTTCTTTTC
1 CAACTCA-TTCATTTTCTTTTC
3215415 CAACTCATTCATTTTCT
1 CAACTCATTCATTTTCT
3215432 CCTCTAGTTC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 3 0.09
21 24 0.71
22 5 0.15
23 2 0.06
ACGTcount: A:0.20, C:0.27, G:0.02, T:0.51
Consensus pattern (21 bp):
CAACTCATTCATTTTCTTTTC
Found at i:3217088 original size:36 final size:31
Alignment explanation
Indices: 3217009--3217094 Score: 91
Period size: 36 Copynumber: 2.6 Consensus size: 31
3216999 CAACACTATC
3217009 TTTCAAGGCTAAGATAGAAACCTCCCAATCT
1 TTTCAAGGCTAAGATAGAAACCTCCCAATCT
* * *
3217040 TTTCACGAGCTAAGATAGAACCTTTCTCCCTATCTT
1 TTTCAAG-GCTAAGATAGAAAC---CTCCCAATC-T
3217076 TTTCGAAGGCTAAGATAGA
1 TTTC-AAGGCTAAGATAGA
3217095 GCCTCTCAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
31 6 0.13
32 13 0.29
35 8 0.18
36 16 0.36
37 2 0.04
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.30
Consensus pattern (31 bp):
TTTCAAGGCTAAGATAGAAACCTCCCAATCT
Found at i:3217558 original size:20 final size:20
Alignment explanation
Indices: 3217533--3217587 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
3217523 GTTGGGCTCA
* *
3217533 ATGTATCGATACAATTCTTG
1 ATGTATAGATACAATTATTG
3217553 ATGTATAGATACAATTATTG
1 ATGTATAGATACAATTATTG
*
3217573 ATGTATTGATACAAT
1 ATGTATAGATACAAT
3217588 GTATCGATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.36, C:0.09, G:0.15, T:0.40
Consensus pattern (20 bp):
ATGTATAGATACAATTATTG
Found at i:3218531 original size:30 final size:30
Alignment explanation
Indices: 3218495--3218579 Score: 116
Period size: 31 Copynumber: 2.8 Consensus size: 30
3218485 TCCCTAGTAA
*
3218495 AGTGGCAACTCTTTTCAAAGTCCACAACTT
1 AGTGGCATCTCTTTTCAAAGTCCACAACTT
* *
3218525 AGTGGCATCCCTTCTTCAAAGTCCATAACTT
1 AGTGGCATCTCTT-TTCAAAGTCCACAACTT
* *
3218556 AGTGGCGTCTCTTTTTAAAGTCCA
1 AGTGGCATCTCTTTTCAAAGTCCA
3218580 TGACTTTGTG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
30 21 0.44
31 27 0.56
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.33
Consensus pattern (30 bp):
AGTGGCATCTCTTTTCAAAGTCCACAACTT
Found at i:3218580 original size:30 final size:30
Alignment explanation
Indices: 3218495--3218592 Score: 124
Period size: 30 Copynumber: 3.2 Consensus size: 30
3218485 TCCCTAGTAA
* *
3218495 AGTGGCAACTCTTTTCAAAGTCCACAACTT
1 AGTGGCATCTCTTTTCAAAGTCCATAACTT
*
3218525 AGTGGCATCCCTTCTTCAAAGTCCATAACTT
1 AGTGGCATCTCTT-TTCAAAGTCCATAACTT
* * *
3218556 AGTGGCGTCTCTTTTTAAAGTCCATGACTT
1 AGTGGCATCTCTTTTCAAAGTCCATAACTT
*
3218586 TGTGGCA
1 AGTGGCA
3218593 CCCCTTTTAT
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
30 31 0.53
31 27 0.47
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.34
Consensus pattern (30 bp):
AGTGGCATCTCTTTTCAAAGTCCATAACTT
Found at i:3218674 original size:62 final size:62
Alignment explanation
Indices: 3218607--3219365 Score: 957
Period size: 62 Copynumber: 12.4 Consensus size: 62
3218597 TTTTATCCTT
* * * * * * * ***
3218607 TTTAGTCCTTAAAGAGCATGATGTCTTTTTCTTTTTAAAGCCTACACGAGTTGGTAGCAATT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * *
3218669 TTTAGTCCTTAAAGAGTAGGAAGTCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
3218731 TTTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTTAAAGCCCACAAGAGTTGGTGGCACTC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
3218793 TTTA--CCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGGGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
3218853 TTTAGTCCTCAAAGAGCAGGATGTCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
3218915 TTTAGTCCTCAAAGAGAAGGATG-CTTTTT-TTTTCAAAGCCCACACGAGTTCGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * * *
3218975 TTTAGTCCTCAAAGAGCAGGA---CTTTTT-TTTTCAAAGCCTATAAGACTTGGTGGCATCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * * *
3219033 TTTAGTCCTCAATGAGCAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * * *
3219095 TTTAGTCCTCAAAGAGCAAGACGCCTTTTTATTTTCAAACCCCACACGAGTTGGTGGCACCT
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* *
3219157 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCTCACACGAGTTGGTGGCACTC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
*
3219219 TTTAGTCCTCAAAGAGCAGGACGCC-TTTT-TTTTCAAAGCCCACATGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
*
3219279 TTTAGTCCTCAAAGAGCAGGACGTCTTTTT-TTTT-AAAGCCCACACGAGTTGGTGGCACCC
1 TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
* * *
3219339 TTTAATCCTCAAAGAGGAGGATGCCTT
1 TTTAGTCCTCAAAGAGCAGGACGCCTT
3219366 GGTGGCACTT
Statistics
Matches: 622, Mismatches: 68, Indels: 16
0.88 0.10 0.02
Matches are distributed among these distances:
58 50 0.08
60 203 0.33
61 22 0.04
62 347 0.56
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (62 bp):
TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCC
Found at i:3218849 original size:122 final size:121
Alignment explanation
Indices: 3218606--3219354 Score: 870
Period size: 122 Copynumber: 6.1 Consensus size: 121
3218596 CTTTTATCCT
* * * * * * * * *
3218606 TTTTAGTCCTTAAAGAGCATGATGTCTTTTTCTTTTTAAAGCCTACACGAGTTGGTAGCAATTTT
1 TTTTAGTCCTCAAAGAGCAAGACG-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* * * * *
3218671 TAGTCCTTAAAGAGTAGGAAGTCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACC
65 TAG-CCTCAAAGAGCAGGACG-CCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* *
3218730 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTTAAAGCCCACAAGAGTTGGTGGCACTCTT
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* *
3218795 TA-CCTCAAAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGGGTTGGTGGCACC
65 TAGCCTCAAAGAGCAGGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * *
3218852 CTTTAGTCCTCAAAGAGCAGGATGTCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* * * *
3218917 TAGTCCTCAAAGAGAAGGATG-CTTTTTTTTTCAAAGCCCACACGAGTTCGTGGCACC
65 TAG-CCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * * * * * *
3218974 CTTTAGTCCTCAAAGAGC-AG--GACTTTTTTTTTCAAAGCCTATAAGACTTGGTGGCA-TCTTT
1 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTC-TT
* * *
3219035 TAGTCCTCAATGAGCAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGTTGGTGGCACC
65 TAG-CCTCAAAGAGCAGGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACC
* *
3219094 TTTTAGTCCTCAAAGAGCAAGACGCCTTTTTATTTTCAAACCCCACACGAGTTGGTGGCAC-CTT
1 TTTTAGTCCTCAAAGAGCAAGACGCC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTC-T
*
3219158 TTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCTCACACGAGTTGGTGGCA-C
64 TTAG-CCTCAAAGAGCAGGACGCC-TTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* * *
3219217 TCTTTAGTCCTCAAAGAGCAGGACGCCTTTT-TTTTCAAAGCCCACATGAGTTGGTGGCACCCTT
1 T-TTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTCTT
* *
3219281 TAGTCCTCAAAGAGCAGGACGTCTTTT-TTTTTAAAGCCCACACGAGTTGGTGGCACC
65 TAG-CCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
* *
3219338 CTTTAATCCTCAAAGAG
1 TTTTAGTCCTCAAAGAG
3219355 GAGGATGCCT
Statistics
Matches: 550, Mismatches: 59, Indels: 36
0.85 0.09 0.06
Matches are distributed among these distances:
117 2 0.00
118 44 0.08
119 11 0.02
120 85 0.15
121 13 0.02
122 202 0.37
123 19 0.03
124 170 0.31
125 4 0.01
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (121 bp):
TTTTAGTCCTCAAAGAGCAAGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACTCTTT
AGCCTCAAAGAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACC
Found at i:3219319 original size:364 final size:364
Alignment explanation
Indices: 3218607--3219359 Score: 1093
Period size: 364 Copynumber: 2.1 Consensus size: 364
3218597 TTTTATCCTT
* * * * *
3218607 TTTAGTCCTTAAAGAGCATGATGTCTTTTTCTTTTTAAAGCCTACACGAGTTGGTAGCAATTTTT
1 TTTAGTCCTCAAAGAGCA-G--GACTTTTTCTTTTCAAAGCCTACAAGACTTGGTAGCAATTTTT
* * * *
3218672 AGTCCTTAAAGAGTAGGAAGTCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
63 AGTCCTCAAAGAGCAGGAAGCCTTTTCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGT
* * *
3218737 CCTCAAAGAGCAAGACGCCTTTTCCTTTTTAAAGCCCACAAGAGTTGGTGGCACTCTTTACCTCA
128 CCTCAAAGAGCAAGACGCCTTTTCATTTTCAAACCCCACAAGAGTTGGTGGCACTCTTTACCTCA
* *
3218802 AAGAGTAGGACGCCTTTTCCTTTTCAAAGCCCACACGGGTTGGTGGCACCCTTTAGTCCTCAAAG
193 AAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAG
* * *
3218867 AGCAGGATGTCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTCTTTAGTCCTCAAAGAGA
258 AGCAGGACGCCTTTT-CTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGA
*
3218932 AGGATGCTTTTTTTTTCAAAGCCCACACGAGTTCGTGGCACCC
322 AGGACGCTTTTTTTTTCAAAGCCCACACGAGTTCGTGGCACCC
* *
3218975 TTTAGTCCTCAAAGAGCAGGACTTTTT-TTTTCAAAGCCTATAAGACTTGGTGGC-ATCTTTTAG
1 TTTAGTCCTCAAAGAGCAGGACTTTTTCTTTTCAAAGCCTACAAGACTTGGTAGCAAT-TTTTAG
* * *
3219038 TCCTCAATGAGCAGGACGCCTTTTCCTTTTTAAAGCCTACACGAGTTGGTGGCACCTTTTAGTCC
65 TCCTCAAAGAGCAGGAAGCCTTTTCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCC
* *
3219103 TCAAAGAGCAAGACGCCTTTTTATTTTCAAACCCCACACGAGTTGGTGGCAC-CTTTTAGTCCTC
130 TCAAAGAGCAAGACGCCTTTTCATTTTCAAACCCCACAAGAGTTGGTGGCACTC-TTTA--CCTC
* * *
3219167 AAAGAGCAGGACGCCTTTTTCTTTTCAAAGCTCACACGAGTTGGTGGCACTCTTTAGTCCTCAAA
192 AAAGAGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAA
* *
3219232 GAGCAGGACGCCTTTT-TTTTCAAAGCCCACATGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC
257 GAGCAGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGA
*
3219296 AGGACGTCTTTTTTTTT-AAAGCCCACACGAGTTGGTGGCACCC
322 AGGACG-CTTTTTTTTTCAAAGCCCACACGAGTTCGTGGCACCC
* *
3219339 TTTAATCCTCAAAGAGGAGGA
1 TTTAGTCCTCAAAGAGCAGGA
3219360 TGCCTTGGTG
Statistics
Matches: 347, Mismatches: 33, Indels: 14
0.88 0.08 0.04
Matches are distributed among these distances:
363 3 0.01
364 231 0.67
365 17 0.05
366 78 0.22
367 1 0.00
368 17 0.05
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (364 bp):
TTTAGTCCTCAAAGAGCAGGACTTTTTCTTTTCAAAGCCTACAAGACTTGGTAGCAATTTTTAGT
CCTCAAAGAGCAGGAAGCCTTTTCCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCT
CAAAGAGCAAGACGCCTTTTCATTTTCAAACCCCACAAGAGTTGGTGGCACTCTTTACCTCAAAG
AGCAGGACGCCTTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGC
AGGACGCCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCACCCTTTAGTCCTCAAAGAGAAGGA
CGCTTTTTTTTTCAAAGCCCACACGAGTTCGTGGCACCC
Found at i:3219385 original size:37 final size:37
Alignment explanation
Indices: 3219327--3219402 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
3219317 CCCACACGAG
*
3219327 TTGGTGGCACCCTTTAATCCTCAAAGAGGAGGATGCC
1 TTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCC
** * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCC
1 TTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCC
3219401 TT
1 TT
3219403 TTTCTTTTCA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.22, C:0.22, G:0.25, T:0.30
Consensus pattern (37 bp):
TTGGTGGCACCCTTTAATCCTCAAAGAGCAGGATGCC
Found at i:3219385 original size:97 final size:99
Alignment explanation
Indices: 3219267--3219460 Score: 266
Period size: 99 Copynumber: 2.0 Consensus size: 99
3219257 CCCACATGAG
* * *
3219267 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTT-TTTT-AAAGCCCACACGAGTTG
1 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
*
3219330 GTGGCACCCTTTAATCCTCAAAGAGGAGGATGCC
66 GTGGCACCCTTTAATCCTCAAAAAGGAGGATGCC
** * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAAACCCACACAAGTTG
1 TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
** * *
3219429 GTGGCACTTTTTAGTCCTCAAAAAGTAGGATG
66 GTGGCACCCTTTAATCCTCAAAAAGGAGGATG
3219461 ACTTTTTCTT
Statistics
Matches: 83, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
97 37 0.45
98 4 0.05
99 42 0.51
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (99 bp):
TTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
GTGGCACCCTTTAATCCTCAAAAAGGAGGATGCC
Found at i:3219430 original size:62 final size:62
Alignment explanation
Indices: 3219364--3219691 Score: 344
Period size: 62 Copynumber: 5.3 Consensus size: 62
3219354 GGAGGATGCC
* * * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAAACCCACACAAG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGACTTTTTCTTTTCAAAGCCCACACGAG
* *
3219426 TTGGTGGCACTTTTTAGTCCTCAAAAAGTAGGATGACTTTTTCTTTTCAAA--CCACACGAG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGACTTTTTCTTTTCAAAGCCCACACGAG
* * *
3219486 TTGGTGGC-CTTTTTTAGTCCTCAAAGAGCGGGA-CATCTTTTTCTTTTTAAAGCCCACACGAG
1 TTGGTGGCAC-TTTTTAGTCCTCAAAGAGCAGGATGA-CTTTTTCTTTTCAAAGCCCACACGAG
** * ** * * * *
3219548 TT-GTGGCACCCTTTAGTCCTCAAAGAGCAAGACAACTTTTTTCTTTTTAAAGCCAATATGAG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGAC-TTTTTCTTTTCAAAGCCCACACGAG
* * * * *
3219610 TTGGTAGCACATTTTAGTCCTTAAAGAGCAGGATGATTTTTTCTTTT-AAAGCCCACATGAG
1 TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGACTTTTTCTTTTCAAAGCCCACACGAG
* * **
3219671 TTAGTGCCACCATTTAGTCCT
1 TTGGTGGCACTTTTTAGTCCT
3219692 TAAGGGGTAG
Statistics
Matches: 225, Mismatches: 33, Indels: 17
0.82 0.12 0.06
Matches are distributed among these distances:
59 2 0.01
60 50 0.22
61 53 0.24
62 94 0.42
63 26 0.12
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (62 bp):
TTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGATGACTTTTTCTTTTCAAAGCCCACACGAG
Found at i:3219513 original size:159 final size:156
Alignment explanation
Indices: 3219207--3219493 Score: 414
Period size: 159 Copynumber: 1.8 Consensus size: 156
3219197 CTCACACGAG
* **
3219207 TTGGTGGCACTCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCAAAGCCCACATGAGTTGGT
1 TTGGTGGCACTCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCAAAACCCACACAAGTTGGT
* *
3219272 GGCACCCTTTAGTCCTCAAAGAGCAGGACGTCTTTTTTTTTAAAGCCCACACGAGTTGGTGGCAC
66 GGCACCCTTTAGTCCTCAAAAAGCAGGACGACTTTTTTTTTAAA-CCCACACGAGTTGGTGGCAC
3219337 CCTTTAATCCTCAAAGAGGAGGATGCC
130 CCTTTAATCCTCAAAGAGGAGGATGCC
* * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAAACCCACACAAGTTG
1 TTGGTGGCACTCTTTAGTCCTCAAAGAGCAGGACGCC-TTTT-TTTTCAAAACCCACACAAGTTG
** * *
3219429 GTGGCACTTTTTAGTCCTCAAAAAGTAGGATGACTTTTTCTTTTCAAA-CCACACGAGTTGGTGG
64 GTGGCACCCTTTAGTCCTCAAAAAGCAGGACGACTTTTT-TTTT-AAACCCACACGAGTTGGTGG
3219493 C
127 C
3219494 CTTTTTTAGT
Statistics
Matches: 114, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
157 34 0.30
158 4 0.04
159 69 0.61
160 4 0.04
161 3 0.03
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.31
Consensus pattern (156 bp):
TTGGTGGCACTCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCAAAACCCACACAAGTTGGT
GGCACCCTTTAGTCCTCAAAAAGCAGGACGACTTTTTTTTTAAACCCACACGAGTTGGTGGCACC
CTTTAATCCTCAAAGAGGAGGATGCC
Found at i:3219527 original size:219 final size:219
Alignment explanation
Indices: 3219145--3219574 Score: 634
Period size: 219 Copynumber: 2.0 Consensus size: 219
3219135 CCCACACGAG
* * *
3219145 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCTCACACGAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
* *
3219210 GTGGCACTCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTTTTCAAAGCCCACATGAGTTGGTGGC
66 GTGGCACTCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTTTTCAAA-CCCACACGAGTTGGTGGC
*
3219275 ACCCTTTAGTCCTCAAAGAGCAGGACGTC-TTTT-TTTTTAAAGCCCACACGAGTTGGTGGCACC
130 ACCCTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTTAAAGCCCACACGAGTT-GTGGCACC
3219338 CTTTAATCCTCAAAGAGGAGGATGCC
194 CTTTAATCCTCAAAGAGGAGGATGCC
* * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAAACCCACACAAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
* * * *
3219429 GTGGCACTTTTTAGTCCTCAAAAAGTAGGATGACTTTTTCTTTTCAAA-CCACACGAGTTGGTGG
66 GTGGCACTCTTTAGTCCTCAAAAAGCAGGACG-CCTTTT-TTTTCAAACCCACACGAGTTGGTGG
** *
3219493 C-CTTTTTTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTTTAAAGCCCACACGAGTTGTGGCAC
129 CAC-CCTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTTAAAGCCCACACGAGTTGTGGCAC
*
3219557 CCTTTAGTCCTCAAAGAG
193 CCTTTAATCCTCAAAGAG
3219575 CAAGACAACT
Statistics
Matches: 189, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
218 1 0.01
219 126 0.67
220 33 0.17
221 29 0.15
ACGTcount: A:0.24, C:0.24, G:0.21, T:0.32
Consensus pattern (219 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAACCCACACAAGTTG
GTGGCACTCTTTAGTCCTCAAAAAGCAGGACGCCTTTTTTTTCAAACCCACACGAGTTGGTGGCA
CCCTTTAGTCCTCAAAGAGCAGGACATCTTTTTCTTTTTAAAGCCCACACGAGTTGTGGCACCCT
TTAATCCTCAAAGAGGAGGATGCC
Found at i:3219712 original size:62 final size:60
Alignment explanation
Indices: 3219523--3219714 Score: 156
Period size: 61 Copynumber: 3.1 Consensus size: 60
3219513 GCGGGACATC
* * * * * *
3219523 TTTTTCTTTTTAAAGCCCACACGAGTTGTGGCACCCTTTAGTCCTCAAAGAGCAAGACA-ACT
1 TTTTTCTTTTTAAAGCCCACATGAGTTGT-GCACCATTTAGTCCT-TAAGGGGAAGA-ATGCT
* * * * * * *
3219585 TTTTTCTTTTTAAAGCCAATATGAGTTGGTAGCA-CATTTTAGTCCTTAAAGAGCAGGATGAT
1 TTTTTCTTTTTAAAGCCCACATGAGTT-GT-GCACCA-TTTAGTCCTTAAGGGGAAGAATGCT
* *
3219647 TTTTTC-TTTTAAAGCCCACATGAGTTAGTGCCACCATTTAGTCCTTAAGGGGTAGAATGCC
1 TTTTTCTTTTTAAAGCCCACATGAGTT-GTG-CACCATTTAGTCCTTAAGGGGAAGAATGCT
3219708 TTTTTCT
1 TTTTTCT
3219715 GTAGGATGTC
Statistics
Matches: 101, Mismatches: 23, Indels: 12
0.74 0.17 0.09
Matches are distributed among these distances:
60 1 0.01
61 48 0.48
62 38 0.38
63 14 0.14
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (60 bp):
TTTTTCTTTTTAAAGCCCACATGAGTTGTGCACCATTTAGTCCTTAAGGGGAAGAATGCT
Found at i:3219718 original size:17 final size:17
Alignment explanation
Indices: 3219698--3219731 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
3219688 TCCTTAAGGG
3219698 GTAGAATGCCTTTTTCT
1 GTAGAATGCCTTTTTCT
* *
3219715 GTAGGATGTCTTTTTCT
1 GTAGAATGCCTTTTTCT
3219732 TTTAAAGCCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.21, T:0.50
Consensus pattern (17 bp):
GTAGAATGCCTTTTTCT
Found at i:3219768 original size:78 final size:78
Alignment explanation
Indices: 3219639--3219792 Score: 220
Period size: 78 Copynumber: 2.0 Consensus size: 78
3219629 CTTAAAGAGC
* * * *
3219639 AGGATGATTTTTTCTTTTAAAGCCCACATGAGTTAGTGCCACCATTTAGTCCTTAAGGGGTAGAA
1 AGGATGATTTTTTCTTTTAAAGCCCACACGAGTTAGTGCCACCATTTAGTCCTCAAAGAGTAGAA
3219704 TGCCTTTTTCTGT
66 TGCCTTTTTCTGT
* * * *
3219717 AGGATG-TCTTTTTCTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAGG
1 AGGATGAT-TTTTTCTTTTAAAGCCCACACGAGTTAGTGCCACCATTTAGTCCTCAAAGAGTAGA
3219781 ATGCCTTTTTCT
65 ATGCCTTTTTCT
3219793 TTTTAAAGCC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
77 1 0.01
78 66 0.99
ACGTcount: A:0.22, C:0.19, G:0.21, T:0.38
Consensus pattern (78 bp):
AGGATGATTTTTTCTTTTAAAGCCCACACGAGTTAGTGCCACCATTTAGTCCTCAAAGAGTAGAA
TGCCTTTTTCTGT
Found at i:3219811 original size:62 final size:62
Alignment explanation
Indices: 3219715--3220211 Score: 630
Period size: 62 Copynumber: 8.1 Consensus size: 62
3219705 GCCTTTTTCT
*
3219715 GTAGGATGTCTTTTTC-TTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * *
3219776 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGACACCTTTTAGCCCTCAAAAA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * * *
3219838 GTAGGATGCC-TTTTCCTTTTAAAGACTACATGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * *
3219899 GCAGGATG-C-TTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * * * *
3219959 GCAGGGTACATTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAAA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * *
3220021 GCAGGA--CATTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGGACCTTTTAGTCCTCAAAGA
1 GTAGGATGC-CTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * * * * *
3220082 GTAGGACGTCTTTTTTTTTTTAAAGCCCACATGAGTTGGTGGCAGCTTTTAGTCCTCAAAAA
1 GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
* * * * * * * *
3220144 GTTGCATACATTTTTCTTTTTAAA-CACCACATGAGTTGGTAGTACCTTTTAGTTCTCAAAGA
1 GTAGGATGCCTTTTTCTTTTTAAAGC-CCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
3220206 GTAGGA
1 GTAGGA
3220212 CGCCCTTTAT
Statistics
Matches: 379, Mismatches: 50, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
60 53 0.14
61 122 0.32
62 204 0.54
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (62 bp):
GTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTGGTGGCACCTTTTAGTCCTCAAAGA
Found at i:3219871 original size:201 final size:184
Alignment explanation
Indices: 3219364--3220203 Score: 771
Period size: 183 Copynumber: 4.5 Consensus size: 184
3219354 GGAGGATGCC
* * * * * * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGCCTTTTTCTTTTCAAAACCCACACAAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTTAAAGCCCACACGAGTTG
* * * * * * *
3219429 GTGGCACTTTTTAGTCCTCAAAAAGTAGGATGACTTTTTCTTTTCAA-ACCACACGAGTTGGTGG
66 GTGACACCTTTTAGTCCTCAAAAAGCAGGATGACTTTTCCTTTTAAAGACCACATGAGTTAGT-G
*** * **
3219493 CC-TTTTTTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTTTAAAGCCCACACGAG
130 CCACCATTTAGTCCTCAAAGAGCAGGATGTCTTTTTC-TTTTAAAGCCCACACGAG
* * * * * * *
3219548 TT-GTGGCACCCTTTAGTCCTCAAAGAGCAAGACAACTTTTTTCTTTTTAAAGCCAATATGAGTT
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGA-TACATTTTTCTTTTTAAAGCCCACACGAGTT
* * * * * *
3219612 GGT-AGCACATTTTAGTCCTTAAAGAGCAGGATGATTTTTTCTTTTAAAGCCCACATGAGTTAGT
65 GGTGA-CACCTTTTAGTCCTCAAAAAGCAGGATGACTTTTCCTTTTAAAGACCACATGAGTTAGT
*
3219676 GCCACCATTTAGTCCTTAAGGGGTAGAATGCCTTTTTCTGTAGGATGTCTTTTTCTTTTAAAGCC
129 GCCACCATTTAGTCCTCAA-----AG-A-G-------C---AGGATGTCTTTTTCTTTTAAAGCC
3219741 CACACGAG
177 CACACGAG
* * *
3219749 TTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGCCTTTTTCTTTTTAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTTAAAGCCCACACGAGTTG
* * * * * *
3219814 GTGACACCTTTTAGCCCTCAAAAAGTAGGATGCCTTTTCCTTTTAAAGACTACATGAGTTGGTGG
66 GTGACACCTTTTAGTCCTCAAAAAGCAGGATGACTTTTCCTTTTAAAGACCACATGAGTTAGTGC
* *
3219879 CACCTTTTAGTCCTCAAAGAGCAGGATG-C-TTTCCTTTTCAAAGCCCACACGAG
131 CACCATTTAGTCCTCAAAGAGCAGGATGTCTTTTTCTTTT-AAAGCCCACACGAG
*
3219932 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGGTACATTTTTCTTTTTAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTTAAAGCCCACACGAGTTG
* * * * * * *
3219997 GTGGCACCTTTTAGTCCTCAAAAAGCAGGA-CATTTTTTCTTTTTAAAGCCCACACGAGTTGGTG
66 GTGACACCTTTTAGTCCTCAAAAAGCAGGATGA-CTTTTCCTTTTAAAGACCACATGAGTTAGTG
** * * * * *
3220061 GGACCTTTTAGTCCTCAAAGAGTAGGACGTCTTTTTTTTTTTAAAGCCCACATGAG
130 CCACCATTTAGTCCTCAAAGAGCAGGATGTC-TTTTTCTTTTAAAGCCCACACGAG
* * ** * *
3220117 TTGGTGGCAGCTTTTAGTCCTCAAAAAGTTGCATACATTTTTCTTTTTAAA-CACCACATGAGTT
1 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTTAAAGC-CCACACGAGTT
* *
3220181 GGT-AGTACCTTTTAGTTCTCAAA
65 GGTGA-CACCTTTTAGTCCTCAAA
3220204 GAGTAGGACG
Statistics
Matches: 543, Mismatches: 83, Indels: 59
0.79 0.12 0.09
Matches are distributed among these distances:
182 8 0.01
183 182 0.34
184 75 0.14
185 110 0.20
186 7 0.01
187 1 0.00
190 2 0.00
191 1 0.00
192 1 0.00
194 1 0.00
195 1 0.00
196 2 0.00
199 1 0.00
201 112 0.21
202 39 0.07
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (184 bp):
TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGGATACATTTTTCTTTTTAAAGCCCACACGAGTTG
GTGACACCTTTTAGTCCTCAAAAAGCAGGATGACTTTTCCTTTTAAAGACCACATGAGTTAGTGC
CACCATTTAGTCCTCAAAGAGCAGGATGTCTTTTTCTTTTAAAGCCCACACGAG
Found at i:3220058 original size:123 final size:121
Alignment explanation
Indices: 3219364--3220210 Score: 694
Period size: 123 Copynumber: 6.8 Consensus size: 121
3219354 GGAGGATGCC
* * * * * * *
3219364 TTGGTGGCACTTTTTAGTCCTCAAAGAGCATGATGC-CTTTTTCTTTTCAAAACCCACACAAGTT
1 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGA--CATTTTTTCTTTTTAAAGCCCACACGAGTT
* * * *
3219428 GGTGGCACTTTTTAGTCCTCAAAAAGTAGGATGACTTTTTCTTTTCAAA--CCACACGAG
64 GGTGGCACCTTTTAGTCCTCAAAGAGTAGG--GTCTTTTTCTTTTTAAAGCCCACACGAG
* * *
3219486 TTGGTGGC-CTTTTTTAGTCCTCAAAGAGCGGGACATCTTTTTCTTTTTAAAGCCCACACGAGTT
1 TTGGTGGCAC-CTTTTAGTCCTCAAAAAGCAGGACAT-TTTTTCTTTTTAAAGCCCACACGAGTT
* * *** * * *
3219550 -GTGGCACCCTTTAGTCCTCAAAGAGCAAGACAACTTTTTTCTTTTTAAAGCCAATATGAG
64 GGTGGCACCTTTTAGTCCTCAAAGAG-TAG-GGTC-TTTTTCTTTTTAAAGCCCACACGAG
* * * * * * *
3219610 TTGGTAGCACATTTTAGTCCTTAAAGAGCAGGATGATTTTTTC-TTTTAAAGCCCACATGAGTTA
1 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGA-CATTTTTTCTTTTTAAAGCCCACACGAGTTG
* * * * *
3219674 GTGCCACCATTTAGTCCTTAAGGGGTAGAATGCCTTTTTCTGTAGGATGTCTTTT-TCTTTTAAA
65 GTGGCACCTTTTAGTCCTCAA-----AG-A-----------GTAGGGTCT-TTTTCT-TTTTAAA
3219738 GCCCACACGAG
111 GCCCACACGAG
* * *
3219749 TTGGTGGCACCTTTTAGTCCTCAAAGAGTAGGATGC-CTTTTTCTTTTTAAAGCCCACACGAGTT
1 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGA--CATTTTTTCTTTTTAAAGCCCACACGAGTT
* * * * * * * * *
3219813 GGTGACACCTTTTAGCCCTCAAAAAGTAGGATGCCTTTTCCTTTTAAAGACTACATGAG
64 GGTGGCACCTTTTAGTCCTCAAAGAGTAGGGT-CTTTTTCTTTTTAAAGCCCACACGAG
* * * *
3219872 TTGGTGGCACCTTTTAGTCCTCAAAGAGCAGG--ATGCTTTCCTTTTCAAAGCCCACACGAGTTG
1 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGACAT-TTTTTCTTTTTAAAGCCCACACGAGTTG
*
3219935 GTGGCACCTTTTAGTCCTCAAAGAGCAGGGTACATTTTTCTTTTTAAAGCCCACACGAG
65 GTGGCACCTTTTAGTCCTCAAAGAGTAGGGT-C-TTTTTCTTTTTAAAGCCCACACGAG
3219994 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGACATTTTTTCTTTTTAAAGCCCACACGAGTTGG
1 TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGACATTTTTTCTTTTTAAAGCCCACACGAGTTGG
* * *
3220059 TGGGACCTTTTAGTCCTCAAAGAGTAGGACGTCTTTTTTTTTTTAAAGCCCACATGAG
66 TGGCACCTTTTAGTCCTCAAAGAGTAGG--GTCTTTTTCTTTTTAAAGCCCACACGAG
* * *
3220117 TTGGTGGCAGCTTTTAGTCCTCAAAAAGTTGCA-TACA-TTTTTCTTTTTAAA-CACCACATGAG
1 TTGGTGGCACCTTTTAGTCCTCAAAAA---GCAGGACATTTTTTCTTTTTAAAGC-CCACACGAG
* * *
3220179 TTGGTAGTACCTTTTAGTTCTCAAAGAGTAGG
62 TTGGTGGCACCTTTTAGTCCTCAAAGAGTAGG
3220211 ACGCCCTTTA
Statistics
Matches: 598, Mismatches: 82, Indels: 88
0.78 0.11 0.11
Matches are distributed among these distances:
120 1 0.00
121 77 0.13
122 119 0.20
123 178 0.30
124 111 0.19
125 8 0.01
126 3 0.01
129 2 0.00
130 1 0.00
134 1 0.00
135 1 0.00
138 2 0.00
139 55 0.09
140 38 0.06
141 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.34
Consensus pattern (121 bp):
TTGGTGGCACCTTTTAGTCCTCAAAAAGCAGGACATTTTTTCTTTTTAAAGCCCACACGAGTTGG
TGGCACCTTTTAGTCCTCAAAGAGTAGGGTCTTTTTCTTTTTAAAGCCCACACGAG
Found at i:3220256 original size:42 final size:44
Alignment explanation
Indices: 3220198--3220418 Score: 193
Period size: 44 Copynumber: 5.1 Consensus size: 44
3220188 CCTTTTAGTT
* * * *
3220198 CTCAAAGAGTAGGACGCCCTTTATTTCCTT-TTCT-CTTTTGTC
1 CTCAAAGAGCAAGACGCACTTTATTTCCTTATTCTCCCTTTGTC
* * *
3220240 CTCAAAGTGCAAGACGCATTTTATTTCCTTATTTTCCCTTTGTC
1 CTCAAAGAGCAAGACGCACTTTATTTCCTTATTCTCCCTTTGTC
* * * *
3220284 CTGAAAGAGCAGGACGCACTTCATTTCCTTATTTTCCCTTTGTC
1 CTCAAAGAGCAAGACGCACTTTATTTCCTTATTCTCCCTTTGTC
* * * * * *
3220328 CTTAAAGAG-TAGACACA-TTTCATTTCTTTCTTTTCCCTTTGTC
1 CTCAAAGAGCAAGACGCACTTT-ATTTCCTTATTCTCCCTTTGTC
* * * *
3220371 CTCAAAGAACATGACGCACTTCATTTCCTT-TT-TTCCTTTGTC
1 CTCAAAGAGCAAGACGCACTTTATTTCCTTATTCTCCCTTTGTC
*
3220413 CCCAAA
1 CTCAAA
3220419 AAGTAGGACT
Statistics
Matches: 146, Mismatches: 28, Indels: 10
0.79 0.15 0.05
Matches are distributed among these distances:
42 41 0.28
43 37 0.25
44 66 0.45
45 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.12, T:0.41
Consensus pattern (44 bp):
CTCAAAGAGCAAGACGCACTTTATTTCCTTATTCTCCCTTTGTC
Found at i:3220300 original size:44 final size:43
Alignment explanation
Indices: 3220198--3220548 Score: 260
Period size: 43 Copynumber: 8.4 Consensus size: 43
3220188 CCTTTTAGTT
* * * * *
3220198 CTCAAAGAGTAGGACGCCCTTTATTTCCTTTTCT-CTTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTCCCTTTGTC
* * * *
3220240 CTCAAAGTGCAAGACGCATTTTATTTCCTTATTTTCCCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTT-TTTTCCCTTTGTC
*
3220284 CTGAAAGAGCAGGACGCACTTCATTTCCTTATTTTCCCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTT-TTTTCCCTTTGTC
* * * * *
3220328 CTTAAAGAGTA-GACACATTTCATTTCTTTCTTTTCCCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTT-TTTTCCCTTTGTC
* *
3220371 CTCAAAGAACATGACGCACTTCATTTCCTTTTTT-CCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTCCCTTTGTC
* * *
3220413 CCCAAA-A--AGTA-GGACTT-A-TT-C-TTTTTCCCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTCCCTTTGTC
* **** * * **
3220448 CTCAAATAGCAGGACATTTTTCTTTTTCTTTTTTTTCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTCCCTTTGTC
* * * * * *
3220491 CTTAAGGAGTAGGACCCATTTCA-TTCTCATTTTT-CCTTTGTC
1 CTCAAAGAGCAGGACGCACTTCATTTC-CTTTTTTCCCTTTGTC
3220533 CTCAAAGAGCAGGACG
1 CTCAAAGAGCAGGACG
3220549 TATTCGTTTT
Statistics
Matches: 244, Mismatches: 52, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
34 5 0.02
35 14 0.06
36 3 0.01
37 1 0.00
38 8 0.03
39 4 0.02
41 3 0.01
42 60 0.25
43 76 0.31
44 70 0.29
ACGTcount: A:0.21, C:0.25, G:0.13, T:0.42
Consensus pattern (43 bp):
CTCAAAGAGCAGGACGCACTTCATTTCCTTTTTTCCCTTTGTC
Found at i:3220444 original size:35 final size:36
Alignment explanation
Indices: 3220398--3220475 Score: 104
Period size: 35 Copynumber: 2.2 Consensus size: 36
3220388 ACTTCATTTC
* *
3220398 CTTTTTTCCTTTGTCCCCAAAAAGTAGGAC-TTATT
1 CTTTTTCCCTTTGTCCCCAAAAAGCAGGACATTATT
* * *
3220433 CTTTTTCCCTTTGTCCTCAAATAGCAGGACATTTTT
1 CTTTTTCCCTTTGTCCCCAAAAAGCAGGACATTATT
3220469 CTTTTTC
1 CTTTTTC
3220476 TTTTTTTTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 26 0.70
36 11 0.30
ACGTcount: A:0.19, C:0.24, G:0.10, T:0.46
Consensus pattern (36 bp):
CTTTTTCCCTTTGTCCCCAAAAAGCAGGACATTATT
Found at i:3220447 original size:120 final size:119
Alignment explanation
Indices: 3220315--3220578 Score: 282
Period size: 120 Copynumber: 2.2 Consensus size: 119
3220305 CATTTCCTTA
*
3220315 TTTTCCCTTTGTCCTTAAAGAGTAGACACATTTC-ATTTCTTTCTTTTCCCTTTGTCCTCAAAGA
1 TTTTCCCTTTGTCCTCAAAGAGTAGACACATTTCTATTTCTTT-TTTT-CCTTTGTCCTCAAAGA
* * * * * *
3220379 ACATGACGCACTTCATT-TCCTTTTTTCCTTTGTCCCCAAAAAGTAGGACTTATTCT
64 ACAGGACCCACTTCATTCT-CATTTTTCCTTTGTCCCCAAAAAGCAGGACGTATTCG
* * ** * * * * *
3220435 TTTTCCCTTTGTCCTCAAATAGCAGGACATTTTTCTTTTTCTTTTTTTTCTTTGTCCTTAAGGAG
1 TTTTCCCTTTGTCCTCAAAGAGTA-GACACATTTCTATTTCTTTTTTTCCTTTGTCCTCAAAGAA
* * * *
3220500 TAGGACCCATTTCATTCTCATTTTTCCTTTGTCCTCAAAGAGCAGGACGTATTCG
65 CAGGACCCACTTCATTCTCATTTTTCCTTTGTCCCCAAAAAGCAGGACGTATTCG
*
3220555 TTTT-CCTTTATCCTCAAAGAGTAG
1 TTTTCCCTTTGTCCTCAAAGAGTAG
3220579 GACGCCTCTT
Statistics
Matches: 118, Mismatches: 23, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
118 1 0.01
119 16 0.14
120 81 0.69
121 13 0.11
122 7 0.06
ACGTcount: A:0.20, C:0.24, G:0.12, T:0.44
Consensus pattern (119 bp):
TTTTCCCTTTGTCCTCAAAGAGTAGACACATTTCTATTTCTTTTTTTCCTTTGTCCTCAAAGAAC
AGGACCCACTTCATTCTCATTTTTCCTTTGTCCCCAAAAAGCAGGACGTATTCG
Found at i:3221599 original size:23 final size:23
Alignment explanation
Indices: 3221573--3221619 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
3221563 TTAAATTTAA
3221573 ACAAGTTTCAAGACCAAATTTGC
1 ACAAGTTTCAAGACCAAATTTGC
3221596 ACAAGTTTCAAGACCAAATTTGC
1 ACAAGTTTCAAGACCAAATTTGC
3221619 A
1 A
3221620 AAAAAGCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (23 bp):
ACAAGTTTCAAGACCAAATTTGC
Found at i:3223921 original size:79 final size:77
Alignment explanation
Indices: 3223827--3224266 Score: 370
Period size: 79 Copynumber: 5.6 Consensus size: 77
3223817 TCATTAATGT
* * * * * *
3223827 TTTTATTTCTAAAATATCGATTTTTCGCCATCGGGGATACTCTAACCCTGCTATTTTCGAGGAGA
1 TTTTATTTCCAAAACATCAATTTTTCACCATCGAGGATACTCTAACCCTGTTATTTTCGAGG-GA
*
3223892 TACTCCAACCGCAA
65 TACTCCAACC-CGA
* * * **
3223906 TTTTATTTCCAAAATAGT-GA-TTTTCTACCATCGAGGATACTCCAACCCTGTTATTTTTTAGAG
1 TTTTATTTCCAAAACA-TCAATTTTTC-ACCATCGAGGATACTCTAACCCTGTTATTTTCGAG-G
* * *
3223969 GATATTCTAACGTC-A
63 GATACTCCAAC-CCGA
* * * * *
3223984 GTTTTATTTCCAAAACACCAATTTTTCACCATCAAGGATACTCCAACCCCGTTATTTCCGAGGGA
1 -TTTTATTTCCAAAACATCAATTTTTCACCATCGAGGATACTCTAACCCTGTTATTTTCGAGGGA
3224049 TACTCCAAACCCGA
65 TACTCC-AACCCGA
* * * * *
3224063 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCTTGTTA-TTTCTGAAGGG
1 TTTTATTTCCAAAACATCAATTTTTCACCATCGAGGATACTCTAACCCTGTTATTTTC-G-AGGG
*
3224127 ATACTCTAATCCCGA
64 ATACTCCAA-CCCGA
** * * * * * *
3224142 TTTTATTTTTAAAACA-CTAATTTTCCACCATCGGGGATACTTTAA-CCTCATTATTTTTGTGGG
1 TTTTATTTCCAAAACATC-AATTTTTCACCATCGAGGATACTCTAACCCT-GTTATTTTCG-AGG
3224205 GATACTCCAACCCCGA
63 GATACTCCAA-CCCGA
* * *
3224221 TTTTGTTTCCAAAATATCAACTTTTCACCATCGAGGATACTCTAAC
1 TTTTATTTCCAAAACATCAATTTTTCACCATCGAGGATACTCTAAC
3224267 TCCATTTTTA
Statistics
Matches: 294, Mismatches: 50, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
77 3 0.01
78 64 0.22
79 216 0.73
80 11 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (77 bp):
TTTTATTTCCAAAACATCAATTTTTCACCATCGAGGATACTCTAACCCTGTTATTTTCGAGGGAT
ACTCCAACCCGA
Found at i:3224115 original size:157 final size:157
Alignment explanation
Indices: 3223827--3224266 Score: 469
Period size: 157 Copynumber: 2.8 Consensus size: 157
3223817 TCATTAATGT
* * * * * *
3223827 TTTTATTTCTAAAATATCGATTTTTCGCCATCGGGGATACTCTAACCCTGCTATTTTCGAGGAGA
1 TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCTAACCCCGTTATTTTCGAGG-GA
* * *
3223892 TACTCC-AACCGCAATTTTATTTCCAAAATAGT-GATTTTCTACCATCGAGGATACTCCAACCCT
65 TACTCCAAACC-CGATTTTATTTCCAAAATA-TCGATTTTCCACCATCGAGGATACTCTAACCCT
** *
3223955 GTTATTT-TTTAGAGGATATTCTAA-CGTCAG-
128 GTTATTTCTGAAG-GGATACTCTAATC--CAGA
* ** * *
3223985 TTTTATTTCCAAAACACCAATTTTTCACCATCAAGGATACTCCAACCCCGTTATTTCCGAGGGAT
1 TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCTAACCCCGTTATTTTCGAGGGAT
* * * *
3224050 ACTCCAAACCCGATTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCTTGTT
66 ACTCCAAACCCGATTTTATTTCCAAAATATCGATTTTCCACCATCGAGGATACTCTAACCCTGTT
*
3224115 ATTTCTGAAGGGATACTCTAATCCCGA
131 ATTTCTGAAGGGATACTCTAATCCAGA
* * * * * * * *
3224142 TTTTATTTTTAAAACACTAATTTTCCACCATCGGGGATACTTTAACCTCATTATTTTTGTGGGGA
1 TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCTAACCCCGTTATTTTCG-AGGGA
* * *
3224207 TACTCCAACCCCGATTTTGTTTCCAAAATATCAACTTTT-CACCATCGAGGATACTCTAAC
65 TACTCCAAACCCGATTTTATTTCCAAAATATCGA-TTTTCCACCATCGAGGATACTCTAAC
3224267 TCCATTTTTA
Statistics
Matches: 234, Mismatches: 41, Indels: 14
0.81 0.14 0.05
Matches are distributed among these distances:
156 3 0.01
157 115 0.49
158 112 0.48
159 4 0.02
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.35
Consensus pattern (157 bp):
TTTTATTTCTAAAACACCAATTTTTCACCATCGGGGATACTCTAACCCCGTTATTTTCGAGGGAT
ACTCCAAACCCGATTTTATTTCCAAAATATCGATTTTCCACCATCGAGGATACTCTAACCCTGTT
ATTTCTGAAGGGATACTCTAATCCAGA
Found at i:3224248 original size:236 final size:236
Alignment explanation
Indices: 3223827--3224262 Score: 533
Period size: 236 Copynumber: 1.8 Consensus size: 236
3223817 TCATTAATGT
* * *
3223827 TTTTATTTCTAAAATATCGATTTTTCGCCATCGGGGATACTCTAACCCTGCTATTTTCGAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCCTGCTATTTTCGAGGAGA
* * * * *
3223892 TACTCCAACCGCAATTTTATTTCCAAAATAGTGATTTTCTACCATCGAGGATACTCCAACCCTGT
66 TACTCCAACCGCAATTTTATTTCCAAAACACTAATTTTCCACCATCGAGGATACTCCAACCCTAT
* * ** *
3223957 TATTTTTTAGAGGATATTCTAACGTCAGTTTTATTTCCAAAACACCAATTTTTCACCATCAAGGA
131 TATTTTTTAGAGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAACTTTTCACCATCAAGGA
3224022 TACTCCAACCCCGTTATTTCCGAGGGATACTCCAAACCCGA
196 TACTCCAACCCCGTTATTTCCGAGGGATACTCCAAACCCGA
* *
3224063 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCTTGTTA-TTTCTGAAGG-
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCCTGCTATTTTC-G-AGGA
* * ** * **
3224126 GATACTCTAATCC-CGATTTTATTTTTAAAACACTAATTTTCCACCATCGGGGATACTTTAA-CC
64 GATACTCCAA-CCGCAATTTTATTTCCAAAACACTAATTTTCCACCATCGAGGATACTCCAACCC
* * * *
3224189 TCATTATTTTTGT-GGGGATACTCCAACCCC-GATTTTGTTTCCAAAATATCAACTTTTCACCAT
128 T-ATTATTTTT-TAGAGGATACTCCAACCCCAG-TTTTATTTCCAAAACACCAACTTTTCACCAT
*
3224252 CGAGGATACTC
190 CAAGGATACTC
3224263 TAACTCCATT
Statistics
Matches: 167, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
235 8 0.05
236 153 0.92
237 6 0.04
ACGTcount: A:0.28, C:0.24, G:0.13, T:0.36
Consensus pattern (236 bp):
TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCTAACCCTGCTATTTTCGAGGAGA
TACTCCAACCGCAATTTTATTTCCAAAACACTAATTTTCCACCATCGAGGATACTCCAACCCTAT
TATTTTTTAGAGGATACTCCAACCCCAGTTTTATTTCCAAAACACCAACTTTTCACCATCAAGGA
TACTCCAACCCCGTTATTTCCGAGGGATACTCCAAACCCGA
Found at i:3224278 original size:130 final size:130
Alignment explanation
Indices: 3224125--3224367 Score: 309
Period size: 130 Copynumber: 1.9 Consensus size: 130
3224115 ATTTCTGAAG
* * * *
3224125 GGATACTCTAATCCCGATTTTATTTTTAAAACA-CTAATT-TTCCACCATCGGGGATACTTTAAC
1 GGATACTCTAATCCCGATTTTATTTCTAAAACATC-AATTCCT-CACCATCGAGGATACTTCAAC
* * *
3224188 CTCATTATTTTTGTGGGGATACTCCAACCCCGATTTTGT-T-TCCAAAATATCAACTTTTCACCA
64 CCCATTATTTTCGAGGGGATACTCCAACCCC-ATTTT-TATCTCCAAAATATCAACTTTTCACCA
3224251 TCGA
127 TCGA
* *
3224255 GGATACTCTAA-CTCC-ATTTTTATTTCTAAAATATCGATTCCTCACCATCGAGGATACTTCAAC
1 GGATACTCTAATC-CCGA-TTTTATTTCTAAAACATCAATTCCTCACCATCGAGGATACTTCAAC
3224318 CCCATTATTTTCGAGGGGATACTCCAACCCCATTTTTATCTCCAAAATAT
64 CCCATTATTTTCGAGGGGATACTCCAACCCCATTTTTATCTCCAAAATAT
3224368 TAAATTTTTC
Statistics
Matches: 98, Mismatches: 9, Indels: 12
0.82 0.08 0.10
Matches are distributed among these distances:
128 1 0.01
129 8 0.08
130 87 0.89
131 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (130 bp):
GGATACTCTAATCCCGATTTTATTTCTAAAACATCAATTCCTCACCATCGAGGATACTTCAACCC
CATTATTTTCGAGGGGATACTCCAACCCCATTTTTATCTCCAAAATATCAACTTTTCACCATCGA
Found at i:3224286 original size:51 final size:51
Alignment explanation
Indices: 3224204--3224320 Score: 139
Period size: 51 Copynumber: 2.3 Consensus size: 51
3224194 ATTTTTGTGG
* *
3224204 GGATACTCCAACCCCGATTTTGTTTCCAAAATATCAACTT-TTCACCATCGA
1 GGATACTCCAACCCCGATTTTATTTCCAAAATATCAA-TTCCTCACCATCGA
* * * *
3224255 GGATACTCTAACTCC-ATTTTTATTTCTAAAATATCGATTCCTCACCATCGA
1 GGATACTCCAACCCCGA-TTTTATTTCCAAAATATCAATTCCTCACCATCGA
*
3224306 GGATACTTCAACCCC
1 GGATACTCCAACCCC
3224321 ATTATTTTCG
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
50 3 0.05
51 52 0.95
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (51 bp):
GGATACTCCAACCCCGATTTTATTTCCAAAATATCAATTCCTCACCATCGA
Found at i:3230631 original size:29 final size:29
Alignment explanation
Indices: 3230539--3230638 Score: 87
Period size: 29 Copynumber: 3.4 Consensus size: 29
3230529 GAATAAAGCT
*
3230539 TGGAGCCCAATTCACATGTCCAAGAAGAG
1 TGGAGCCCAATTTACATGTCCAAGAAGAG
* * * * * **
3230568 TGAAGCTCAATTTGCATGTATTCATG--GCT
1 TGGAGCCCAATTTACATG--TCCAAGAAGAG
*
3230597 TTGAGCCCAATTTACATGTCCAAGAAGAG
1 TGGAGCCCAATTTACATGTCCAAGAAGAG
3230626 TGGAGCCCAATTT
1 TGGAGCCCAATTT
3230639 GTATATATTT
Statistics
Matches: 50, Mismatches: 17, Indels: 8
0.67 0.23 0.11
Matches are distributed among these distances:
27 4 0.08
29 42 0.84
31 4 0.08
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (29 bp):
TGGAGCCCAATTTACATGTCCAAGAAGAG
Found at i:3234679 original size:20 final size:20
Alignment explanation
Indices: 3234667--3234721 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
3234657 TACAATTCAT
3234667 CACGTATCGATACAATGTAC
1 CACGTATCGATACAATGTAC
*
3234687 CATGTATCGATACAATGTAC
1 CACGTATCGATACAATGTAC
* *
3234707 CATGTATTGATACAA
1 CACGTATCGATACAA
3234722 ACAATGGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.36, C:0.20, G:0.15, T:0.29
Consensus pattern (20 bp):
CACGTATCGATACAATGTAC
Found at i:3234798 original size:20 final size:20
Alignment explanation
Indices: 3234750--3234805 Score: 103
Period size: 21 Copynumber: 2.8 Consensus size: 20
3234740 CTGCAAGTTT
3234750 CATGTATCGATACAATTGTC
1 CATGTATCGATACAATTGTC
3234770 CATTGTATCGATACAATTGTC
1 CA-TGTATCGATACAATTGTC
3234791 CATGTATCGATACAA
1 CATGTATCGATACAA
3234806 AGCATAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.43
21 20 0.57
ACGTcount: A:0.32, C:0.20, G:0.14, T:0.34
Consensus pattern (20 bp):
CATGTATCGATACAATTGTC
Found at i:3235430 original size:31 final size:31
Alignment explanation
Indices: 3235371--3235431 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 31
3235361 TAATTAAGAC
*
3235371 TTTCGTTAAAAAAAAATTCTCCCTTTAATCAA
1 TTTCGTT-AAAAAAAATTCTCCCCTTAATCAA
3235403 TTTCGTT-AAAAAAATTCTCCCCCTTAATC
1 TTTCGTTAAAAAAAATTCT-CCCCTTAATC
3235432 TGTTAAAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 11 0.41
31 9 0.33
32 7 0.26
ACGTcount: A:0.36, C:0.23, G:0.03, T:0.38
Consensus pattern (31 bp):
TTTCGTTAAAAAAAATTCTCCCCTTAATCAA
Found at i:3236754 original size:13 final size:13
Alignment explanation
Indices: 3236736--3236762 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3236726 ATAGTAACCC
3236736 ATGTATCGATACA
1 ATGTATCGATACA
3236749 ATGTATCGATACA
1 ATGTATCGATACA
3236762 A
1 A
3236763 GGAATATTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3240635 original size:20 final size:20
Alignment explanation
Indices: 3240610--3240683 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
3240600 TTCTTTGTAA
*
3240610 GTATCGATACATTTGGTCAT
1 GTATCGATACATTTGATCAT
* *
3240630 GTATCGATAC-TGTGCATTAT
1 GTATCGATACATTTG-ATCAT
***
3240650 GTATCGATACATTTGAAGGT
1 GTATCGATACATTTGATCAT
3240670 GTATCGATACATTT
1 GTATCGATACATTT
3240684 AAGGGTTTTA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
19 3 0.07
20 39 0.87
21 3 0.07
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (20 bp):
GTATCGATACATTTGATCAT
Found at i:3241258 original size:16 final size:16
Alignment explanation
Indices: 3241234--3241265 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
3241224 CCTTAATAAA
*
3241234 GCAATTTAACAATTTC
1 GCAAATTAACAATTTC
3241250 GCAAATTAACAATTTC
1 GCAAATTAACAATTTC
3241266 TTTTAATCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.19, G:0.06, T:0.34
Consensus pattern (16 bp):
GCAAATTAACAATTTC
Found at i:3243139 original size:13 final size:13
Alignment explanation
Indices: 3243121--3243145 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3243111 GTATCGACAG
3243121 TGTATCGATACAA
1 TGTATCGATACAA
3243134 TGTATCGATACA
1 TGTATCGATACA
3243146 GAGAATGCTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3243361 original size:8 final size:8
Alignment explanation
Indices: 3243342--3243381 Score: 71
Period size: 8 Copynumber: 4.9 Consensus size: 8
3243332 ATTTTCAACA
3243342 ACAAACATC
1 ACAAA-ATC
3243351 ACAAAATC
1 ACAAAATC
3243359 ACAAAATC
1 ACAAAATC
3243367 ACAAAATC
1 ACAAAATC
3243375 ACAAAAT
1 ACAAAAT
3243382 TTAATCAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
8 26 0.84
9 5 0.16
ACGTcount: A:0.62, C:0.25, G:0.00, T:0.12
Consensus pattern (8 bp):
ACAAAATC
Found at i:3249442 original size:20 final size:21
Alignment explanation
Indices: 3249417--3249471 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
3249407 TTCTTAGTAA
*
3249417 GTATCGATACATTTG-GTCAT
1 GTATCGATACATTTGCATCAT
* *
3249437 GTATCGATAC-TGTGCATTAT
1 GTATCGATACATTTGCATCAT
3249457 GTATCGATACATTTG
1 GTATCGATACATTTG
3249472 AAGGTGTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 3 0.10
20 23 0.79
21 3 0.10
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (21 bp):
GTATCGATACATTTGCATCAT
Found at i:3249483 original size:20 final size:18
Alignment explanation
Indices: 3249460--3249498 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 18
3249450 GCATTATGTA
3249460 TCGATACATTTGAAGGTGTT
1 TCGATACATTT-AAGG-GTT
3249480 TCGATACATTTAAGGGTT
1 TCGATACATTTAAGGGTT
3249498 T
1 T
3249499 TGACCTTTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 11 0.58
ACGTcount: A:0.26, C:0.10, G:0.23, T:0.41
Consensus pattern (18 bp):
TCGATACATTTAAGGGTT
Found at i:3250516 original size:20 final size:20
Alignment explanation
Indices: 3250491--3250550 Score: 77
Period size: 20 Copynumber: 3.0 Consensus size: 20
3250481 CTGCAAGTTT
3250491 CATGTATCGATACAATTATC
1 CATGTATCGATACAATTATC
* * *
3250511 CATGTATCGTTACAATGA-A
1 CATGTATCGATACAATTATC
3250530 CATGTATCGATACAATGTATC
1 CATGTATCGATACAAT-TATC
3250551 GATACAAAGC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
19 15 0.47
20 17 0.53
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTATC
Found at i:3250535 original size:19 final size:20
Alignment explanation
Indices: 3250491--3250546 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 20
3250481 CTGCAAGTTT
* *
3250491 CATGTATCGATACAATTATC
1 CATGTATCGATACAATGATA
*
3250511 CATGTATCGTTACAATGA-A
1 CATGTATCGATACAATGATA
3250530 CATGTATCGATACAATG
1 CATGTATCGATACAATG
3250547 TATCGATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.36, C:0.18, G:0.14, T:0.32
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Found at i:3250549 original size:13 final size:13
Alignment explanation
Indices: 3250531--3250557 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3250521 TACAATGAAC
3250531 ATGTATCGATACA
1 ATGTATCGATACA
3250544 ATGTATCGATACA
1 ATGTATCGATACA
3250557 A
1 A
3250558 AGCATAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3254912 original size:19 final size:19
Alignment explanation
Indices: 3254888--3254955 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
3254878 AATTCAACGA
3254888 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
3254907 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
3254922 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
3254939 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
3254956 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:3254926 original size:32 final size:32
Alignment explanation
Indices: 3254890--3254952 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3254880 TTCAACGATT
*
3254890 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
3254922 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
3254953 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:3254927 original size:13 final size:13
Alignment explanation
Indices: 3254909--3254933 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3254899 ACATAAGTTT
3254909 TGTATCGATACAA
1 TGTATCGATACAA
3254922 TGTATCGATACA
1 TGTATCGATACA
3254934 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3255013 original size:13 final size:13
Alignment explanation
Indices: 3254995--3255020 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3254985 CATTTTTCTG
3254995 TGTATCGATACAT
1 TGTATCGATACAT
3255008 TGTATCGATACAT
1 TGTATCGATACAT
3255021 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3255017 original size:33 final size:33
Alignment explanation
Indices: 3254975--3255041 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3254965 GCCAAGGAAA
***
3254975 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
3255008 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
3255041 T
1 T
3255042 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:3257533 original size:28 final size:27
Alignment explanation
Indices: 3257466--3257534 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
3257456 CTTCACAACC
**
3257466 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
3257493 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
3257521 GGGGATACTCCAAC
1 GGGGATACTCCAAC
3257535 TCCGGTTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:3257577 original size:107 final size:105
Alignment explanation
Indices: 3257411--3257804 Score: 307
Period size: 107 Copynumber: 3.7 Consensus size: 105
3257401 TTCTATAATC
* * *
3257411 GGGGATACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACAACCGGGGATACTC
1 GGGGATACTCCAACTCCGGTTTTA-TTCC--AAAAACACCAATTT-TTCACAATCGGGGATACTC
3257476 CAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGA
62 CAACCCCGTTAATCATCGGGGATACTCCAACCCCGTTA-TTCCGA
* *
3257521 GGGGATACTCCAACTCCGGTTTTA-TCGCTAAAACACTAATTTTTCCACAATCGGGGATACTCCA
1 GGGGATACTCCAACTCCGGTTTTATTC-CAAAAACACCAATTTTT-CACAATCGGGGATACTCCA
** * ** * * * ** * *
3257585 ATCCTGGTTTTATTTTC---AAAACGCCAATTTTCCTTTAAT-C--
64 A-CCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTCCGA
* * * *
3257625 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGAGGATGCTCCAA
1 GGGGATACTCCAACTCCGGTTTTA-TTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAA
* * *
3257690 CCTCGTTATTTCACCGGGGATACTCCAACCCCGTTACTTCCGA
65 CCCCGTTA-ATCATCGGGGATACTCCAACCCCGTTA-TTCCGA
* * * * *** * * *
3257733 GGGGATACTCCAACCCCGGCTTTATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAAC
1 GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
3257798 CCCGTTA
66 CCCGTTA
3257805 TTTTCGAAGG
Statistics
Matches: 219, Mismatches: 49, Indels: 35
0.72 0.16 0.12
Matches are distributed among these distances:
102 2 0.01
103 6 0.03
104 46 0.21
105 15 0.07
106 20 0.09
107 70 0.32
108 31 0.14
109 7 0.03
110 22 0.10
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (105 bp):
GGGGATACTCCAACTCCGGTTTTATTCCAAAAACACCAATTTTTCACAATCGGGGATACTCCAAC
CCCGTTAATCATCGGGGATACTCCAACCCCGTTATTCCGA
Found at i:3257606 original size:52 final size:53
Alignment explanation
Indices: 3257521--3257690 Score: 181
Period size: 52 Copynumber: 3.3 Consensus size: 53
3257511 TTATTTCCGA
* *
3257521 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTC-CAAAAACACCAATTTTTCCACAATC
* * **
3257573 GGGGATACTCCAA-TCCTGGTTTTATTTTC-AAAACGCCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACTCC-GGTTTTATTTCCAAAAACACCAATTTTTCC-ACAATC
* *
3257625 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTCCACAATC
* *
3257677 GAGGATGCTCCAAC
1 GGGGATACTCCAAC
3257691 CTCGTTATTT
Statistics
Matches: 98, Mismatches: 13, Indels: 14
0.78 0.10 0.11
Matches are distributed among these distances:
51 9 0.09
52 71 0.72
53 13 0.13
54 5 0.05
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (53 bp):
GGGGATACTCCAACTCCGGTTTTATTTCCAAAAACACCAATTTTTCCACAATC
Found at i:3257674 original size:104 final size:103
Alignment explanation
Indices: 3257353--3257689 Score: 272
Period size: 104 Copynumber: 3.2 Consensus size: 103
3257343 ATCAATTCTC
* * * *
3257353 CACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT-CTATAATCGGGGAT
1 CACAATCGAGGATACTCCAA-TCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
*
3257417 ACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTT
65 ACTCCAACTCCGATTTTATTTCC--AAAAACACCAATTT-TT
* * * * * ** * * * ** * *
3257459 CACAACCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCGA
1 CACAATCGAGGATACTCCAATCCGGTTTTATTTTC---AAAACACCAATTTTCCTTTA-AT-C--
* * *
3257521 GGGGATACTCCAACTCCGGTTTTA--TCGCTAAAACACTAATTTTT
59 GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
* *
3257565 CCACAATCGGGGATACTCCAATCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGGGA
1 -CACAATCGAGGATACTCCAATCC-GGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGA
*
3257630 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
*
3257670 CACAATCGAGGATGCTCCAA
1 CACAATCGAGGATACTCCAA
3257690 CCTCGTTATT
Statistics
Matches: 174, Mismatches: 41, Indels: 34
0.70 0.16 0.14
Matches are distributed among these distances:
104 47 0.27
105 16 0.09
106 32 0.18
107 41 0.24
108 9 0.05
109 7 0.04
110 22 0.13
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (103 bp):
CACAATCGAGGATACTCCAATCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:3257715 original size:28 final size:28
Alignment explanation
Indices: 3257679--3257750 Score: 92
Period size: 28 Copynumber: 2.6 Consensus size: 28
3257669 TCACAATCGA
* * * *
3257679 GGATGCTCCAACCTCGTTATTTCAC-CGG
1 GGATACTCCAACCCCGTTACTTC-CGAGG
3257707 GGATACTCCAACCCCGTTACTTCCGAGG
1 GGATACTCCAACCCCGTTACTTCCGAGG
3257735 GGATACTCCAACCCCG
1 GGATACTCCAACCCCG
3257751 GCTTTATTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
27 1 0.03
28 38 0.97
ACGTcount: A:0.21, C:0.36, G:0.21, T:0.22
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTTCCGAGG
Found at i:3257734 original size:212 final size:212
Alignment explanation
Indices: 3257351--3257757 Score: 604
Period size: 212 Copynumber: 1.9 Consensus size: 212
3257341 TTATCAATTC
* *
3257351 TCCACAATCGAGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
* *
3257416 TACTCTAACTCCGATTTTATTTCCAAAAAAACACCAATTTCTTCACAACCGGGGATACTCCAACC
66 TACTCCAACTCCGATTTTATTTCC-AAAAAACACCAATTTCTTCACAACCGAGGATACTCCAACC
* * * *
3257481 CCGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACTCCGGTTTTAT
130 CCGTTAATCACCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTAT
3257546 CGCTAAAACACTAATTTT
195 CGCTAAAACACTAATTTT
* * * *
3257564 TCCACAATCGGGGATACTCCAA-TCCTGGTTTTATTTTCAAAACGCCAATTTTCCTTTAATCGGG
1 TCCACAATCGAGGATACTCCAACTCC-GATTTTATTTTCAAAACACCAATTTT-CTATAATCGGG
* * *
3257628 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATGCTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAACCGAGGATACTCCAAC
* *
3257691 CTCGTTATTTCACCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
129 CCCGTTA-ATCACCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTT
3257756 AT
193 AT
3257758 TCCCAAAATA
Statistics
Matches: 174, Mismatches: 17, Indels: 7
0.88 0.09 0.04
Matches are distributed among these distances:
211 26 0.15
212 70 0.40
213 43 0.25
214 35 0.20
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (212 bp):
TCCACAATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAACCGAGGATACTCCAACCC
CGTTAATCACCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCGGCTTTATC
GCTAAAACACTAATTTT
Found at i:3261956 original size:20 final size:20
Alignment explanation
Indices: 3261931--3262007 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
3261921 GTAAACAGAC
* *
3261931 AGAATGTATCCATATATTGA
1 AGAATGTATCGATACATTGA
*
3261951 AGAATGTATCGATACATTCA
1 AGAATGTATCGATACATTGA
*
3261971 TA-CATGTATCGATACATTGA
1 -AGAATGTATCGATACATTGA
*
3261991 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
3262008 CTGGGTACTT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.02
20 47 0.96
21 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:3262996 original size:28 final size:28
Alignment explanation
Indices: 3262927--3265667 Score: 2777
Period size: 28 Copynumber: 95.9 Consensus size: 28
3262917 AAAAGAGTTA
* * ** *
3262927 CCACTGGCTTGTGAGCTTTGAAAAAAGTT
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
*
3262956 CCACTGACTTGTGGGATTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3262984 CCACTGACTTGTGGGCTTTG-ACGGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGG-TG
* **
3263012 CCACTGACTTGTAGGCTTTGAAAAGAATG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
*
3263041 CCACTGACTTGTTGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263069 CCATTGACTTGTGGGCTTTGAAAGCGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3263097 CCACTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263125 CCACTAACTTATGGGCTTTGAAATGGGTTG
1 CCACTGACTTGTGGGCTTTGAAA-GGG-TG
**
3263155 CCACCAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263183 CCACTGAATTACGTGGGCTTTAAAAGGGTG
1 CCACTGACTT--GTGGGCTTTGAAAGGGTG
* *
3263213 CCACTGACTTGGGGGCTTTGAAAGAGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3263241 CCACTGACTTGTGAGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263269 CCACTAACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
3263297 CCACTAACTAGTGGGCTTTGAAAAGTGTTA
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* *
3263327 CCA-TCGACTCGTGGGCTTTGAAAGGATG
1 CCACT-GACTTGTGGGCTTTGAAAGGGTG
* * * *
3263355 CAACTGAATTGTGGGCTTTAAAAAGAGTTG
1 CCACTGACTTGTGGGCTTT-GAAAG-GGTG
* * *
3263385 CCACCGACTCGTGTGGGCTTTGAAAAGATG
1 CCACTGACT--TGTGGGCTTTGAAAGGGTG
* * *
3263415 TCACTGACTTGTTGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
3263444 CCACTGACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3263472 CCACTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3263500 CCACTAACTTATGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* *
3263529 CCACTGACTTGTTGGCATTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3263557 CCACTGACTTATGGGCATTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263585 CCACTGACTTGTGGGCTTTAAAAAGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3263613 CCACTAACTTGTAGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263641 CCATTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263669 CCATTGACTTGTGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
*
3263698 CCACTGACTTGTTGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263726 CCACTGACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263754 CCACTAACTTACGTGGGCTTCGAAAGGGTG
1 CCACTGACTT--GTGGGCTTTGAAAGGGTG
3263784 CCACTGACTTGTGGGCTTTG-AAGGAGTG
1 CCACTGACTTGTGGGCTTTGAAAGG-GTG
*
3263812 CTACT-AGCTTGTGGGCTTTGAAAGGGTG
1 CCACTGA-CTTGTGGGCTTTGAAAGGGTG
*
3263840 CCACTGACTGGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3263868 CCATTGACTCGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3263896 CCACTGACCTGTGGGCTTTGAAAAGAGTTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* * *
3263926 CCACCGACTCGTGGGCTATT-AAAGGATG
1 CCACTGACTTGTGGGCT-TTGAAAGGGTG
*
3263954 CCACTGACTTGTGGGCTTTGAAAAGAGTTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* * *
3263984 CCACCGACTCGTGTGGGCTTTGAAAAGATG
1 CCACTGACT--TGTGGGCTTTGAAAGGGTG
*
3264014 CCACTGACTTGTGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
*
3264043 CCACT-ATTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3264070 CCACTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3264098 CCATTGACTTGTGGGCTTCGGAAA-GGTG
1 CCACTGACTTGTGGGCTT-TGAAAGGGTG
* *
3264126 CCACTGACTTGTAGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3264154 CCACTGACTTGTGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* * **
3264183 CCACTGACTTATCGATTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3264211 CCACTAACTTGTGGGCTTTGATATAGGTTG
1 CCACTGACTTGTGGGCTTTGA-A-AGGGTG
** *
3264241 CCACCAACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
3264269 CCACTGACTTACGTGGGCTTTGAAAGGGTG
1 CCACTGACTT--GTGGGCTTTGAAAGGGTG
*
3264299 CCATTGACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
** *
3264327 CCTTTGACTGGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
** *
3264355 CCTTTGACTGGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* ** *
3264383 CCATTGACTCATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
3264411 CCACTAACCTATGGGCTTTGAAAAGAGCTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* * *
3264441 CCACCGACTCGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264469 CCACTGACTTATGGGCTTTGAAAAGAGTTA
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
3264499 CCACTGACTCGTGTGGGCTTTGAAAGGGTG
1 CCACTGACT--TGTGGGCTTTGAAAGGGTG
** * *
3264529 CCTTTGACTGGTGGGCTTTGAAAGGGTA
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
** *
3264557 CCTTTGACTGGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264585 CCATTGACTCGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3264613 CCACTGACCTGTGGGCTTTGAAAAGAGCTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* * * *
3264643 CCACCGACTCGTGGGCTTTGAAATGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3264671 CCACTGACTTGTGGGCTTTGAAAAGAGTTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* *
3264701 CCACTGACTTGTGTGGGCTTTGAAAAGATG
1 CCACTGAC-T-TGTGGGCTTTGAAAGGGTG
* * * *
3264731 ACACTAACTTATGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* *
3264760 CCATTGACTTGTGGGCTTTGAATGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264788 CTAATGACTTGTGGGCTTTGAAAGGTTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264816 CCACTAACTTGTGGGCTTCGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* *
3264845 CCACTAACTTGTTGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264873 TCACTGACTTGTGGACTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3264901 CCACTAACTTATGGGCTTTGAAAAGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* **
3264929 CCACTGACTTGTGGGTTTTGAAAAGAATG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
*
3264958 CCACTAACTTGTGGGCTTTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3264986 CCATTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3265014 CCACTAACTTGCGGGCTTTGAAATAGGTTG
1 CCACTGACTTGTGGGCTTTG-AA-AGGGTG
** *
3265044 CCACCAACTTGTGGGCTTTGGAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3265072 CCACTGACTTACGCGGGCTTTGAAAGGGTG
1 CCACTGACTT--GTGGGCTTTGAAAGGGTG
* *
3265102 CCACTAACTTGTGGGCTTTGAAAGAGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3265130 TCATTGACTTGTGGGCTTTGAAAGGGTA
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3265158 CCAAT-AATTGGTGGGCTTTGAAAGGGTG
1 CCACTGACTT-GTGGGCTTTGAAAGGGTG
* *
3265186 CCATTGACTTGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
*
3265214 CCACTGACTTGTGGGCTTTGAAAAGTGTTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* * *
3265244 CCACCGACTCGTGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* **
3265272 CCATTGACTTGTGGGCTTTGAAAAGAATTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* ***
3265302 CCACCGACTCGTGTGGGCTTTGAAAAAATG
1 CCACTGACT--TGTGGGCTTTGAAAGGGTG
* *
3265332 CCACTGACTTGTGGGTTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* *
3265361 CCACTGACTTGTGGG-TTTGAAAAGCTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * *
3265388 CCGCTGACTTATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
3265416 TCACTGTCTTG-GGGCTTTAAAAAGAGTG
1 CCACTGACTTGTGGGCTTT-GAAAGGGTG
* *
3265444 CCACTGACTGGTGGGCATTGAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
** *
3265472 CCACTGACTCATGGGCTTTGAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* *
3265500 CGACTGACTTGTGGGCTTTGAAAAGAGTTG
1 CCACTGACTTGTGGGCTTTG-AAAG-GGTG
* *
3265530 CCACTGACTCGTGTGGGCTTTGAAAAGATG
1 CCACTGACT--TGTGGGCTTTGAAAGGGTG
* *
3265560 CCACTAACTTGTGGGCTTTGAAAAGAGTG
1 CCACTGACTTGTGGGCTTTG-AAAGGGTG
* * * * * *
3265589 CCACGGAGTTATGGAC-TTAAAAGGATG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
3265616 CCACGGAGTTGTGGACTTTAAAAGGGTG
1 CCACTGACTTGTGGGCTTTGAAAGGGTG
* * * *
3265644 CCACGGAGTTGTGGACTTTAAAAG
1 CCACTGACTTGTGGGCTTTGAAAG
3265668 ATGCCACAGA
Statistics
Matches: 2285, Mismatches: 349, Indels: 157
0.82 0.13 0.06
Matches are distributed among these distances:
27 76 0.03
28 1395 0.61
29 337 0.15
30 391 0.17
31 22 0.01
32 64 0.03
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (28 bp):
CCACTGACTTGTGGGCTTTGAAAGGGTG
Found at i:3264331 original size:14 final size:14
Alignment explanation
Indices: 3264314--3264389 Score: 57
Period size: 14 Copynumber: 5.4 Consensus size: 14
3264304 GACTTGTGGG
3264314 CTTTGAAAGGGTGC
1 CTTTGAAAGGGTGC
** *
3264328 CTTTG-ACTGGTGGG
1 CTTTGAAAGGGT-GC
3264342 CTTTGAAAGGGTGC
1 CTTTGAAAGGGTGC
** *
3264356 CTTTG-ACTGGTGGG
1 CTTTGAAAGGGT-GC
3264370 CTTTGAAAGGGTGC
1 CTTTGAAAGGGTGC
*
3264384 CATTGA
1 CTTTGA
3264390 CTCATGGGCT
Statistics
Matches: 45, Mismatches: 13, Indels: 8
0.68 0.20 0.12
Matches are distributed among these distances:
13 8 0.18
14 29 0.64
15 8 0.18
ACGTcount: A:0.17, C:0.14, G:0.37, T:0.32
Consensus pattern (14 bp):
CTTTGAAAGGGTGC
Found at i:3265618 original size:27 final size:27
Alignment explanation
Indices: 3265587--3265715 Score: 179
Period size: 27 Copynumber: 4.7 Consensus size: 27
3265577 TTGAAAAGAG
*
3265587 TGCCACGGAGTTATGGACTTAAAAGGA
1 TGCCACGGAGTTGTGGACTTAAAAGGA
*
3265614 TGCCACGGAGTTGTGGACTTTAAAAGGG
1 TGCCACGGAGTTGTGGAC-TTAAAAGGA
3265642 TGCCACGGAGTTGTGGACTTTAAAA-GA
1 TGCCACGGAGTTGTGGAC-TTAAAAGGA
* * *
3265669 TGCCACAGAGTTATGGACTTAAAAAGA
1 TGCCACGGAGTTGTGGACTTAAAAGGA
*
3265696 TGCCACAGAGTTGTGGACTT
1 TGCCACGGAGTTGTGGACTT
3265716 TGAAAAGAAA
Statistics
Matches: 94, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 6 0.06
27 55 0.59
28 33 0.35
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (27 bp):
TGCCACGGAGTTGTGGACTTAAAAGGA
Found at i:3265686 original size:82 final size:85
Alignment explanation
Indices: 3265541--3265749 Score: 255
Period size: 82 Copynumber: 2.5 Consensus size: 85
3265531 CACTGACTCG
* * ** * * *
3265541 TGTGGGCTTTGAAAA-GATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACGGAGTTATGGAC
1 TGTGGACTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACAGAGTTATGGAC
* *
3265605 TTAAAAGGATGCCACGGAGT
66 TTAAAAAGATGCCACAGAGT
3265625 TGTGGACTTT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGA-TGCCACAGAGTTATGGAC
1 TGTGGACTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACAGAGTTATGGAC
3265687 TTAAAAAGATGCCACAGAGT
66 TTAAAAAGATGCCACAGAGT
** * * *
3265707 TGTGGACTTTGAAAAGAAATGCCACTGAATCGTGGACTTTGAA
1 TGTGGACTTTGAAAAG-GGTGCCACGGAGTTGTGGACTTTGAA
3265750 GAGTCGTAGT
Statistics
Matches: 107, Mismatches: 14, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
82 45 0.42
83 15 0.14
84 45 0.42
85 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.25
Consensus pattern (85 bp):
TGTGGACTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTGAAAAGAGTGCCACAGAGTTATGGAC
TTAAAAAGATGCCACAGAGT
Found at i:3265722 original size:55 final size:55
Alignment explanation
Indices: 3265541--3265746 Score: 211
Period size: 55 Copynumber: 3.7 Consensus size: 55
3265531 CACTGACTCG
* * * *
3265541 TGTGGGCTTTGAAAAGATGCCACTA-ACTTGTGGGCTTTGAAAAGAGTGCCACGGAGT
1 TGTGGACTTT-AAAAGATGCCAC-AGAGTTGTGGACTTTAAAAAGA-TGCCACGGAGT
* * * *
3265598 TATGGAC-TTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGACTTTAAAA-GATGCCACAGAGTTGTGGACTTTAAAAAGATGCCACGGAGT
* *
3265653 TGTGGACTTTAAAAGATGCCACAGAGTTATGGAC-TTAAAAAGATGCCACAGAGT
1 TGTGGACTTTAAAAGATGCCACAGAGTTGTGGACTTTAAAAAGATGCCACGGAGT
* * *
3265707 TGTGGACTTTGAAAAGAAATGCCACTGAATCGTGGACTTT
1 TGTGGACTTT-AAAAG--ATGCCACAGAGTTGTGGACTTT
3265747 GAAGAGTCGT
Statistics
Matches: 124, Mismatches: 18, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
54 27 0.22
55 44 0.35
56 31 0.25
57 20 0.16
58 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (55 bp):
TGTGGACTTTAAAAGATGCCACAGAGTTGTGGACTTTAAAAAGATGCCACGGAGT
Found at i:3265749 original size:228 final size:228
Alignment explanation
Indices: 3265242--3265749 Score: 520
Period size: 228 Copynumber: 2.2 Consensus size: 228
3265232 TGAAAAGTGT
* * * * * * *
3265242 TGCCACCGACTCGTGGGCTTTGAAAGGATGCCATTGACTTGTGGGCTTTGAAAAGAATTGCCACC
1 TGCCACAGACTCATGGACTTTGAAAGAATGCCACTGAATCGTGGGCTTTGAAAAGAATTGCCACC
* * * *
3265307 GACTCGTGTGGGCTTTGAAAAAATGCCACTGACTTGTGGGTTTTGAAAAGAGTGCCACTGACTTG
66 GACTCGTGTGGGCTTTGAAAAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACGGACTTA
** * * * * * * * * *
3265372 TGGGTTTGAAAAGCTGCCGCTGACTTATGGGCTTTGAAAGGATGTCACTGTCTTGGGGCTTTAAA
131 TGGACTTGAAAAGATGCCACGGACTTATGGACTTTAAAAGGATGCCACGGACTTGGGACTTTAAA
* * * * * *
3265437 AAGAGTGCCACTGACTGGTGGGCATTGAAAGGG
196 AAGAGTGCCACAGACTGATGGACATTAAAAAGA
* * * * * * * *
3265470 TGCCACTGACTCATGGGCTTTGAAAGGATGCGACTGACTTGTGGGCTTTGAAAAGAGTTGCCACT
1 TGCCACAGACTCATGGACTTTGAAAGAATGCCACTGAATCGTGGGCTTTGAAAAGAATTGCCACC
* *
3265535 GACTCGTGTGGGCTTTGAAAAGATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACGGAGTTA
66 GACTCGTGTGGGCTTTGAAAAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACGGACTTA
* * * *
3265600 TGGACTT-AAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGGTGCCACGGAGTTGTGGACTTT-
131 TGGACTTGAAAA-GATGCCACGGACTTATGGACTTTAAAAGGATGCCACGGACTTG-GGACTTTA
* *
3265663 AAAAGA-TGCCACAGAGTTATGGAC-TTAAAAAGA
194 AAAAGAGTGCCACAGACTGATGGACATTAAAAAGA
* ** *
3265696 TGCCACAGAGTTGTGGACTTTGAAAAGAAATGCCACTGAATCGTGGACTTTGAA
1 TGCCACAGACTCATGGACTTTG-AAAG-AATGCCACTGAATCGTGGGCTTTGAA
3265750 GAGTCGTAGT
Statistics
Matches: 231, Mismatches: 45, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
226 23 0.10
227 21 0.09
228 181 0.78
229 6 0.03
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.27
Consensus pattern (228 bp):
TGCCACAGACTCATGGACTTTGAAAGAATGCCACTGAATCGTGGGCTTTGAAAAGAATTGCCACC
GACTCGTGTGGGCTTTGAAAAAATGCCACTAACTTGTGGGCTTTGAAAAGAGTGCCACGGACTTA
TGGACTTGAAAAGATGCCACGGACTTATGGACTTTAAAAGGATGCCACGGACTTGGGACTTTAAA
AAGAGTGCCACAGACTGATGGACATTAAAAAGA
Found at i:3267050 original size:35 final size:35
Alignment explanation
Indices: 3266993--3267065 Score: 87
Period size: 35 Copynumber: 2.1 Consensus size: 35
3266983 TTTTTTTGGA
*
3266993 TTTTTGTTGTTCCTTTTTTATTTTG-CTTTTGCATT
1 TTTTTGTTGTTCCTTTTATATTTTGACTTTTGC-TT
*
3267028 TTTTTGTT-TTTCTTTTCATATTTTGTACTTTTGCTT
1 TTTTTGTTGTTCCTTTT-ATATTTTG-ACTTTTGCTT
3267064 TT
1 TT
3267066 GACCTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
34 7 0.21
35 15 0.45
36 4 0.12
37 7 0.21
ACGTcount: A:0.07, C:0.11, G:0.10, T:0.73
Consensus pattern (35 bp):
TTTTTGTTGTTCCTTTTATATTTTGACTTTTGCTT
Found at i:3267393 original size:28 final size:28
Alignment explanation
Indices: 3267360--3267416 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
3267350 AAAGTTACCT
3267360 TTGGAAGTTTAAGGTAGAAAGGCAAGAC
1 TTGGAAGTTTAAGGTAGAAAGGCAAGAC
3267388 TTGGAAGTTTAAGGTAGAAAGGCAAGAC
1 TTGGAAGTTTAAGGTAGAAAGGCAAGAC
3267416 T
1 T
3267417 AAGAATCATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.07, G:0.32, T:0.23
Consensus pattern (28 bp):
TTGGAAGTTTAAGGTAGAAAGGCAAGAC
Found at i:3276422 original size:156 final size:156
Alignment explanation
Indices: 3276077--3276433 Score: 380
Period size: 156 Copynumber: 2.3 Consensus size: 156
3276067 AAGTTCAAGT
* * * * * * * * *
3276077 AAAATTACGAAAATACTCTTAAAGAATACCTTCAATGTAGAAGTACCAGATACCCCTAAAGGACT
1 AAAATTACAAAAATGCTCCTAGAGGATACCTTCGACGTAAAAGTACCAGATACCCCTAAAGAACT
* * *
3276142 TAAAAAAAGATTATAGATAGGATGAACCTATCCTAAATACCCACTTTCGGCATAAAAACAAACCC
66 TAAAAAAAGATTAAAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAACAAACCC
* *
3276207 AGTGACAACTTAGGACTTGGTTCTAC
131 AGTGACAACCTAGGACTTGGTTCTAA
* * * * *
3276233 AAAATTACCAAAATGCTCCTAGAGGATATCTTCGACGTAAAAGTGCCTGATATCCCTAAAGAACT
1 AAAATTACAAAAATGCTCCTAGAGGATACCTTCGACGTAAAAGTACCAGATACCCCTAAAGAACT
* * * * *
3276298 T-AAAAAAGATTACAAAATGGGATGAACCTATCTTAAATACCCACCTTCGGCATTAAAGCAGACC
66 TAAAAAAAGATTA-AAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAACAAACC
** *
3276362 TGGTGA-AACCTAGGACTTAGTT-TCAA
130 CAGTGACAACCTAGGACTTGGTTCT-AA
* * *
3276388 AAAATTACAAAAATGC-CCTTATAGGTATACCTTCGACATTAAAGTA
1 AAAATTACAAAAATGCTCC-TAGAGG-ATACCTTCGACGTAAAAGTA
3276434 TCTCGGTAAC
Statistics
Matches: 165, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
154 3 0.02
155 46 0.28
156 116 0.70
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (156 bp):
AAAATTACAAAAATGCTCCTAGAGGATACCTTCGACGTAAAAGTACCAGATACCCCTAAAGAACT
TAAAAAAAGATTAAAAATAGGATGAACCTATCCTAAATACCCACCTTCGGCATAAAAACAAACCC
AGTGACAACCTAGGACTTGGTTCTAA
Found at i:3276490 original size:100 final size:100
Alignment explanation
Indices: 3276372--3276557 Score: 363
Period size: 100 Copynumber: 1.9 Consensus size: 100
3276362 TGGTGAAACC
*
3276372 TAGGACTTAGTTTCAAAAAATTACAAAAATGCCCTTATAGGTATACCTTCGACATTAAAGTATCT
1 TAGGACTTAGTTTCAAAAAATTACAAAAATGCCCTTATAGGTATACCTTCAACATTAAAGTATCT
3276437 CGGTAACCCTAGTGGACACTATACCTTCGACATTA
66 CGGTAACCCTAGTGGACACTATACCTTCGACATTA
3276472 TAGGACTTAGTTTCAAAAAATTACAAAAATGCCCTTATAGGTATACCTTCAACATTAAAGTATCT
1 TAGGACTTAGTTTCAAAAAATTACAAAAATGCCCTTATAGGTATACCTTCAACATTAAAGTATCT
3276537 CGGTAACCCTAGTGGACACTA
66 CGGTAACCCTAGTGGACACTA
3276558 AAATGATAAG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
100 85 1.00
ACGTcount: A:0.36, C:0.20, G:0.14, T:0.30
Consensus pattern (100 bp):
TAGGACTTAGTTTCAAAAAATTACAAAAATGCCCTTATAGGTATACCTTCAACATTAAAGTATCT
CGGTAACCCTAGTGGACACTATACCTTCGACATTA
Found at i:3278142 original size:25 final size:25
Alignment explanation
Indices: 3278114--3278173 Score: 120
Period size: 25 Copynumber: 2.4 Consensus size: 25
3278104 TTCTTACTAC
3278114 TGTTGTTTCTCTCCTTTGCTGCTGT
1 TGTTGTTTCTCTCCTTTGCTGCTGT
3278139 TGTTGTTTCTCTCCTTTGCTGCTGT
1 TGTTGTTTCTCTCCTTTGCTGCTGT
3278164 TGTTGTTTCT
1 TGTTGTTTCT
3278174 TTTGGTGCTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.00, C:0.22, G:0.20, T:0.58
Consensus pattern (25 bp):
TGTTGTTTCTCTCCTTTGCTGCTGT
Found at i:3278392 original size:15 final size:16
Alignment explanation
Indices: 3278374--3278403 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3278364 TGCTACCTAC
3278374 TTTGCTG-TTGCTTTT
1 TTTGCTGCTTGCTTTT
3278389 TTTGCTGCTTGCTTT
1 TTTGCTGCTTGCTTT
3278404 GCTATTTTTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.00, C:0.17, G:0.20, T:0.63
Consensus pattern (16 bp):
TTTGCTGCTTGCTTTT
Found at i:3278529 original size:10 final size:10
Alignment explanation
Indices: 3278516--3278540 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
3278506 TTTTATCCCT
3278516 TTTTTTTTTG
1 TTTTTTTTTG
3278526 TTTTTTTTTG
1 TTTTTTTTTG
3278536 TTTTT
1 TTTTT
3278541 ATTTAATTGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:3278554 original size:19 final size:19
Alignment explanation
Indices: 3278532--3278572 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
3278522 TTTGTTTTTT
*
3278532 TTTGTTTT-TATTTAATTGA
1 TTTGTTTTGTA-TTAAATGA
3278551 TTTGTTTTGTATTAAATGA
1 TTTGTTTTGTATTAAATGA
3278570 TTT
1 TTT
3278573 TATCATCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.22, C:0.00, G:0.12, T:0.66
Consensus pattern (19 bp):
TTTGTTTTGTATTAAATGA
Found at i:3278687 original size:14 final size:13
Alignment explanation
Indices: 3278663--3278719 Score: 62
Period size: 14 Copynumber: 4.2 Consensus size: 13
3278653 ATTATACTGT
3278663 AAAAATT-AATTA
1 AAAAATTAAATTA
3278675 AAAGAATTAAATTA
1 AAA-AATTAAATTA
*
3278689 TAAAAATTAAAATTT
1 -AAAAATT-AAATTA
*
3278704 AAAAATTAAAATA
1 AAAAATTAAATTA
3278717 AAA
1 AAA
3278720 TTTTATATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
12 3 0.08
13 11 0.29
14 16 0.42
15 8 0.21
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (13 bp):
AAAAATTAAATTA
Found at i:3278869 original size:17 final size:16
Alignment explanation
Indices: 3278849--3278880 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
3278839 TGTAACACGT
3278849 AAAAAAATCAAAAAATG
1 AAAAAAAT-AAAAAATG
3278866 AAAAAAATAAAAAAT
1 AAAAAAATAAAAAAT
3278881 AAATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.81, C:0.03, G:0.03, T:0.12
Consensus pattern (16 bp):
AAAAAAATAAAAAATG
Found at i:3280336 original size:31 final size:31
Alignment explanation
Indices: 3280179--3280661 Score: 299
Period size: 31 Copynumber: 15.1 Consensus size: 31
3280169 GACTCATGGG
* * *
3280179 CTTTGAAAAGGTTGTCACCAACTCGTGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
** * * * * * *
3280210 CTTCAAAAAGGTTGTCACTAACTCATGTAGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
*
3280241 CTTTGACTAGGGTGCCACCAACTCGTGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* * **
3280272 CTCTGAA-AGGTTTGGTTGCCACCGACTTATGTGGA
1 CTTTGAATA-G---GG-TGCCACCAACTCGTGTGGA
* *
3280307 CTTTGATTGGGGTGCCACCAACTCGTGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* * *
3280338 CTTTGAAAAAGTTTGGTTGCCACCGACTTGTGTGGA
1 CTTTG-AATAG---GG-TGCCACCAACTCGTGTGGA
* *
3280374 CTTTGAATGGGGTGCCACCAACTCATGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* *
3280405 CTTT-AACTATGGTGCCACTAACTCGTG-GAGA
1 CTTTGAA-TAGGGTGCCACCAACTCGTGTG-GA
* * * * *
3280436 CTTTGAAAAGGTTACCACCAACTCATGTAGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* * * * * * * *
3280467 CTATGAAAAGGTTACCGCTAACTCATGTGCA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* * * *
3280498 TTTTGACTGGGGTGCCACCAACTCATGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* *
3280529 CATTGAAAAGGTTTGGTTGCCACCAACTCGTGTGGA
1 CTTTGAATA-G---GG-TGCCACCAACTCGTGTGGA
* **
3280565 CTTTGAATGGGGTGCTGCCAACTCGTGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
* * *
3280596 CTTT-AATTGTGGTGCCATCAACTCGTGTGAA
1 CTTTGAATAG-GGTGCCACCAACTCGTGTGGA
* * *
3280627 CTTTGAAAAGGTTGCCACCAACTTGTGTGGA
1 CTTTGAATAGGGTGCCACCAACTCGTGTGGA
3280658 CTTT
1 CTTT
3280662 AAAAAGGATT
Statistics
Matches: 347, Mismatches: 83, Indels: 44
0.73 0.18 0.09
Matches are distributed among these distances:
30 8 0.02
31 247 0.71
32 14 0.04
34 2 0.01
35 30 0.09
36 46 0.13
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (31 bp):
CTTTGAATAGGGTGCCACCAACTCGTGTGGA
Found at i:3280371 original size:36 final size:35
Alignment explanation
Indices: 3280253--3280826 Score: 238
Period size: 31 Copynumber: 17.2 Consensus size: 35
3280243 TTGACTAGGG
* *
3280253 TGCCACCAACTCGTGTGGACTCTGAAAGGTTTGGT
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
* ** * *
3280288 TGCCACCGACTTATGTGGACTTTG---A-TTGGGG
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
3280319 TGCCACCAACTCGTGTGGACTTTGAAAAAGTTTGGT
1 TGCCACCAACTCGTGTGGACTTTG-AAAAGTTTGGT
* * * *
3280355 TGCCACCGACTTGTGTGGACTTTG--AA--TGGGG
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
* * *
3280386 TGCCACCAACTCATGTGGACTTT---AACTATGG-
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
*
3280417 TGCCACTAACTCGTG-GAGACTTTGAAAA----GGT
1 TGCCACCAACTCGTGTG-GACTTTGAAAAGTTTGGT
* * * *
3280448 TACCACCAACTCATGTAGACTATGAAAA----GGT
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
* * * * * * * * *
3280479 TACCGCTAACTCATGTGCATTTTG---A-CTGGGG
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
* *
3280510 TGCCACCAACTCATGTGGACATTGAAAAGGTTTGGT
1 TGCCACCAACTCGTGTGGACTTTGAAAA-GTTTGGT
* *
3280546 TGCCACCAACTCGTGTGGACTTTG--AA--TGGGG
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
**
3280577 TGCTGCCAACTCGTGTGGACTTT---AA-TTGTGG-
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTT-TGGT
* *
3280608 TGCCATCAACTCGTGTGAACTTTGAAAA----GGT
1 TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
* * *
3280639 TGCCACCAACTTGTGTGGACTTTAAAAAGGATT-G-
1 TGCCACCAACTCGTGTGGACTTTGAAAA-GTTTGGT
** ** *
3280673 TGCCACTGACTTATGTGGGCTTTGGAAAAGGTTTGGT
1 TGCCACCAACTCGTGTGGACTTT-GAAAA-GTTTGGT
* * * * *
3280710 TGCCACCGATTTGTATGGACGTTGAAAAAGGTTTGGT
1 TGCCACCAACTCGTGTGGACTTTG-AAAA-GTTTGGT
* * * *
3280747 TACCATCGACTTGTGTGGACTTTGGAAAAGGTTTGGT
1 TGCCACCAACTCGTGTGGACTTT-GAAAA-GTTTGGT
* * * *
3280784 TACCACCAACTTGTATGGACTTTAAAAATGATTTGGT
1 TGCCACCAACTCGTGTGGACTTTGAAAA-G-TTTGGT
3280821 TGCCAC
1 TGCCAC
3280827 TGACTTGTGT
Statistics
Matches: 419, Mismatches: 82, Indels: 74
0.73 0.14 0.13
Matches are distributed among these distances:
28 1 0.00
30 9 0.02
31 198 0.47
32 4 0.01
33 2 0.00
34 26 0.06
35 30 0.07
36 58 0.14
37 90 0.21
38 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.30
Consensus pattern (35 bp):
TGCCACCAACTCGTGTGGACTTTGAAAAGTTTGGT
Found at i:3280715 original size:37 final size:37
Alignment explanation
Indices: 3280636--3280847 Score: 204
Period size: 37 Copynumber: 5.9 Consensus size: 37
3280626 ACTTTGAAAA
** *
3280636 GGTTGCCACCAACTTGTGTGGACTTT-AAAAAGGATT
1 GGTTGCCACTGACTTGTGTGGACTTTGAAAAAGGTTT
* * *
3280672 -G-TGCCACTGACTTATGTGGGCTTTGGAAAAGGTTT
1 GGTTGCCACTGACTTGTGTGGACTTTGAAAAAGGTTT
* * * *
3280707 GGTTGCCACCGATTTGTATGGACGTTGAAAAAGGTTT
1 GGTTGCCACTGACTTGTGTGGACTTTGAAAAAGGTTT
* *
3280744 GGTTACCA-TCGACTTGTGTGGACTTTGGAAAAGGTTT
1 GGTTGCCACT-GACTTGTGTGGACTTTGAAAAAGGTTT
* ** * *
3280781 GGTTACCACCAACTTGTATGGACTTT-AAAAATGATTT
1 GGTTGCCACTGACTTGTGTGGACTTTGAAAAA-GGTTT
3280818 GGTTGCCACTGACTTGTGT-GACTTT-AAAAA
1 GGTTGCCACTGACTTGTGTGGACTTTGAAAAA
3280848 TGATTTAGTT
Statistics
Matches: 142, Mismatches: 28, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
34 19 0.13
35 9 0.06
36 16 0.11
37 98 0.69
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (37 bp):
GGTTGCCACTGACTTGTGTGGACTTTGAAAAAGGTTT
Found at i:3280770 original size:74 final size:74
Alignment explanation
Indices: 3280636--3280842 Score: 237
Period size: 74 Copynumber: 2.9 Consensus size: 74
3280626 ACTTTGAAAA
* * * * * * *
3280636 GGTTGCCACCAACTTGTGTGGACTTTAAAAAGGA-TT-G-TGCCACTGACTTATGTGGGCTTTGG
1 GGTTACCACCAACTTGTATGGACTTGAAAAATGATTTGGTTACCACTGACTTGTGTGGACTTTGG
3280698 AAAAGGTTT
66 AAAAGGTTT
* * * *
3280707 GGTTGCCACCGATTTGTATGGACGTTGAAAAA-GGTTTGGTTACCA-TCGACTTGTGTGGACTTT
1 GGTTACCACCAACTTGTATGGAC-TTGAAAAATGATTTGGTTACCACT-GACTTGTGTGGACTTT
3280770 GGAAAAGGTTT
64 GGAAAAGGTTT
* *
3280781 GGTTACCACCAACTTGTATGGACTTTAAAAATGATTTGGTTGCCACTGACTTGTGT-GACTTT
1 GGTTACCACCAACTTGTATGGACTTGAAAAATGATTTGGTTACCACTGACTTGTGTGGACTTT
3280843 AAAAATGATT
Statistics
Matches: 115, Mismatches: 14, Indels: 12
0.82 0.10 0.09
Matches are distributed among these distances:
71 21 0.18
72 9 0.08
73 15 0.13
74 69 0.60
75 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.27, T:0.34
Consensus pattern (74 bp):
GGTTACCACCAACTTGTATGGACTTGAAAAATGATTTGGTTACCACTGACTTGTGTGGACTTTGG
AAAAGGTTT
Found at i:3281071 original size:55 final size:55
Alignment explanation
Indices: 3280999--3281110 Score: 134
Period size: 55 Copynumber: 2.0 Consensus size: 55
3280989 TTGAAAAAGG
* *
3280999 TTTGACATGGGTGTCAATGTGCTAATTCAAGGAGAGCAACATTGGACTTAAAGAT
1 TTTGACAAGGATGTCAATGTGCTAATTCAAGGAGAGCAACATTGGACTTAAAGAT
* * * ** ** *
3281054 TTTGACAAGGATGTCAATGTGTTGATTTAAGGCTAGTGATATTGGACTTAAAGAT
1 TTTGACAAGGATGTCAATGTGCTAATTCAAGGAGAGCAACATTGGACTTAAAGAT
3281109 TT
1 TT
3281111 GGATAAATTT
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.34
Consensus pattern (55 bp):
TTTGACAAGGATGTCAATGTGCTAATTCAAGGAGAGCAACATTGGACTTAAAGAT
Found at i:3282150 original size:15 final size:15
Alignment explanation
Indices: 3282127--3282158 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
3282117 GATTTATTTT
3282127 TGACAAGAAAGGTGA
1 TGACAAGAAAGGTGA
*
3282142 TGACCAGAAAGGTGA
1 TGACAAGAAAGGTGA
3282157 TG
1 TG
3282159 CAATTTGGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.41, C:0.09, G:0.34, T:0.16
Consensus pattern (15 bp):
TGACAAGAAAGGTGA
Found at i:3287188 original size:33 final size:33
Alignment explanation
Indices: 3287132--3287197 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3287122 AAATTCCCAG
*
3287132 ATGTATCGATACAAAGATCAATGTATCTATACA
1 ATGTATCGATACAAAGATCAATGTATCGATACA
**
3287165 ATGTATCGATACATTGAGT-AATGTATCGATACA
1 ATGTATCGATACAAAGA-TCAATGTATCGATACA
3287198 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACAAAGATCAATGTATCGATACA
Found at i:3287276 original size:21 final size:19
Alignment explanation
Indices: 3287228--3287281 Score: 63
Period size: 21 Copynumber: 2.7 Consensus size: 19
3287218 CAGCGATACA
3287228 TTGTATCGATACAACACTT
1 TTGTATCGATACAACACTT
* * *
3287247 ATATATCGATACAATTACTGT
1 TTGTATCGATACAA-CACT-T
3287268 TTGTATCGATACAA
1 TTGTATCGATACAA
3287282 ATTGTTGAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 12 0.43
20 3 0.11
21 13 0.46
ACGTcount: A:0.35, C:0.17, G:0.11, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACAACACTT
Found at i:3291459 original size:26 final size:26
Alignment explanation
Indices: 3291430--3291479 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
3291420 TAACAATTCT
3291430 AAAAAG-CAGGATTGGAGTATCCCTC
1 AAAAAGTCAGGATTGGAGTATCCCTC
*
3291455 AAAAAGTCAGGGTTGGAGTATCCCT
1 AAAAAGTCAGGATTGGAGTATCCCT
3291480 ATGGACGACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.34, C:0.18, G:0.26, T:0.22
Consensus pattern (26 bp):
AAAAAGTCAGGATTGGAGTATCCCTC
Found at i:3291568 original size:27 final size:27
Alignment explanation
Indices: 3291546--3291606 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
3291536 GAGGTTAGAA
3291546 TATCCCCTTAAAGAGGTAGGGTTGGAG
1 TATCCCCTTAAAGAGGTAGGGTTGGAG
*
3291573 TATCCCCTTGAAGAGGTAGGGTTGGAG
1 TATCCCCTTAAAGAGGTAGGGTTGGAG
3291600 TATCCCC
1 TATCCCC
3291607 AAAAGTGACA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.23, C:0.20, G:0.31, T:0.26
Consensus pattern (27 bp):
TATCCCCTTAAAGAGGTAGGGTTGGAG
Found at i:3292252 original size:87 final size:87
Alignment explanation
Indices: 3292106--3292274 Score: 286
Period size: 87 Copynumber: 1.9 Consensus size: 87
3292096 CTCGAAGTCA
* *
3292106 GTACCTTACTAGTAATATTTTGACTCGATATTGGTTTCTTTAGTTTCGATTAATCATTATTTCTA
1 GTACCTTACTAGTAATATTTTGACTCAATATTAGTTTCTTTAGTTTCGATTAATCATTATTTCTA
3292171 TGTAATCCCCTTGAATGTATCG
66 TGTAATCCCCTTGAATGTATCG
* *
3292193 GTACCTTACTAGTAATATTTTGACTCAATATTAGTTT-TTTCGGTTTCGATTAATCATTATTTTT
1 GTACCTTACTAGTAATATTTTGACTCAATATTAGTTTCTTT-AGTTTCGATTAATCATTATTTCT
3292257 ATGTAATCCCCTTGAATG
65 ATGTAATCCCCTTGAATG
3292275 CATTAATTTT
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
86 3 0.04
87 74 0.96
ACGTcount: A:0.25, C:0.15, G:0.13, T:0.47
Consensus pattern (87 bp):
GTACCTTACTAGTAATATTTTGACTCAATATTAGTTTCTTTAGTTTCGATTAATCATTATTTCTA
TGTAATCCCCTTGAATGTATCG
Found at i:3296433 original size:32 final size:32
Alignment explanation
Indices: 3296390--3296599 Score: 188
Period size: 32 Copynumber: 6.5 Consensus size: 32
3296380 GATGTTATCG
* * *
3296390 ACTTGTGTGGGTTTTTGAGAGGGTTGCCACCG
1 ACTTGTGTGGGTTTTAGAAAGGGTTGCCACCA
*
3296422 ACTTGTATGGGTTTTAGAAAGGGTTGCCACCA
1 ACTTGTGTGGGTTTTAGAAAGGGTTGCCACCA
* * *
3296454 ACTTGTGTGGGCTTTAAAAAAGGTTGCCACCA
1 ACTTGTGTGGGTTTTAGAAAGGGTTGCCACCA
* * * *
3296486 ACTTATGTGGGTTTTAGAAAAGGTTTCCACTA
1 ACTTGTGTGGGTTTTAGAAAGGGTTGCCACCA
* * * * *
3296518 GCTTGTGTGGGCTTTGGAAAAAGGTTGCCACTA
1 ACTTGTGTGGGTTTTAG-AAAGGGTTGCCACCA
* * * * * *
3296551 GCTT-TGTAGGCTTTGAAAAAAGGTTGCCACCG
1 ACTTGTGT-GGGTTTTAGAAAGGGTTGCCACCA
3296583 ACTTGTGTGGGCTTTTA
1 ACTTGTGTGGG-TTTTA
3296600 AAGGGAAAGG
Statistics
Matches: 146, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
32 117 0.80
33 29 0.20
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (32 bp):
ACTTGTGTGGGTTTTAGAAAGGGTTGCCACCA
Found at i:3296497 original size:64 final size:63
Alignment explanation
Indices: 3296411--3296616 Score: 223
Period size: 64 Copynumber: 3.1 Consensus size: 63
3296401 TTTTTGAGAG
* * *
3296411 GGTTGCCACCGACTTGTATGGGTTTTAGAAAGGGTTGCCACCAACTTGTGTGGGCTTTAAAAAA
1 GGTTGCCACCAACTT-TGTGGGTTTTAGAAAAGGTTGCCACCAACTTGTGTGGGCTTTAAAAAA
* * * *
3296475 GGTTGCCACCAACTTATGTGGGTTTTAGAAAAGGTTTCCACTAGCTTGTGTGGGCTTTGGAAAAA
1 GGTTGCCACCAACTT-TGTGGGTTTTAGAAAAGGTTGCCACCAACTTGTGTGGGCTTT-AAAAAA
* * * * * *
3296540 GGTTGCCACTAGCTTTGTAGGCTTTGAAAAAAGGTTGCCACCGACTTGTGTGGGCTTTTAAAGGG
1 GGTTGCCACCAACTTTGT-GGGTTTTAGAAAAGGTTGCCACCAACTTGTGTGGGC-TTTAAA---
3296605 AAA
61 AAA
3296608 GGTTGCCAC
1 GGTTGCCAC
3296617 TGGCTTGTGT
Statistics
Matches: 118, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
64 54 0.46
65 49 0.42
66 3 0.03
68 12 0.10
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (63 bp):
GGTTGCCACCAACTTTGTGGGTTTTAGAAAAGGTTGCCACCAACTTGTGTGGGCTTTAAAAAA
Found at i:3296572 original size:65 final size:64
Alignment explanation
Indices: 3296443--3296638 Score: 200
Period size: 65 Copynumber: 3.0 Consensus size: 64
3296433 TTTTAGAAAG
* * * * *
3296443 GGTTGCCACCA-ACTTGTGTGGGCTTTAAAAAAGGTTGCCACCAACTTATGTGGGTTTTAGAAAA
1 GGTTGCCA-CAGACTTGTGTGGGCTTTAAAAAAGGTTGCCACTAGCTTATGTGGCTTTGAAAAAA
* *
3296507 GGTTTCCACTAG-CTTGTGTGGGCTTTGGAAAAAGGTTGCCACTAGCTT-TGTAGGCTTTGAAAA
1 GGTTGCCAC-AGACTTGTGTGGGCTTT-AAAAAAGGTTGCCACTAGCTTATGT-GGCTTTGAAAA
3296570 AA
63 AA
* * *
3296572 GGTTGCCACCGACTTGTGTGGGCTTTTAAAGGGAAAGGTTGCCACTGGCTTGTGTTGGCTTTGAA
1 GGTTGCCACAGACTTGTGTGGGC-TTTAAA---AAAGGTTGCCACTAGCTTATG-TGGCTTTGAA
3296637 AA
61 AA
3296639 GGTTTGTCCA
Statistics
Matches: 110, Mismatches: 11, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
63 1 0.01
64 26 0.24
65 49 0.45
66 3 0.03
68 17 0.15
69 13 0.12
70 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (64 bp):
GGTTGCCACAGACTTGTGTGGGCTTTAAAAAAGGTTGCCACTAGCTTATGTGGCTTTGAAAAAA
Found at i:3296926 original size:13 final size:13
Alignment explanation
Indices: 3296910--3296967 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
3296900 GAAGTTTCTA
*
3296910 ACAAACGTTCTTG
1 ACAAAAGTTCTTG
3296923 ACAAAAGTTCTTG
1 ACAAAAGTTCTTG
* * *
3296936 ACGATAATTTCTTA
1 AC-AAAAGTTCTTG
*
3296950 ACAACAATTTCTTG
1 ACAA-AAGTTCTTG
3296964 ACAA
1 ACAA
3296968 TAGCAAATTA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
13 15 0.41
14 22 0.59
ACGTcount: A:0.38, C:0.19, G:0.10, T:0.33
Consensus pattern (13 bp):
ACAAAAGTTCTTG
Found at i:3300731 original size:19 final size:19
Alignment explanation
Indices: 3300706--3300762 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
3300696 TTATATTGAT
* *
3300706 ACATTGTATTGATACATGT
1 ACATTGTATCGATACATGC
*
3300725 TCATTGTATCGATACATGC
1 ACATTGTATCGATACATGC
3300744 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
3300763 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGC
Found at i:3300752 original size:20 final size:20
Alignment explanation
Indices: 3300708--3300844 Score: 77
Period size: 20 Copynumber: 6.8 Consensus size: 20
3300698 ATATTGATAC
* **
3300708 ATTGTATTGATACATGTTC-
1 ATTGTATCGATACATGCACA
3300727 ATTGTATCGATACATGCACA
1 ATTGTATCGATACATGCACA
3300747 ATTGTATCGATACATG-A-A
1 ATTGTATCGATACATGCACA
* * * * * *
3300765 ACTGGCAGTAGCTACCCTACCACTA
1 A-TTGTA-TCGATA-CAT-GCAC-A
*
3300790 TTTGTATCGATACATGGCAC-
1 ATTGTATCGATACAT-GCACA
*
3300810 ATTGTATCGATACATG-ATGA
1 ATTGTATCGATACATGCA-CA
3300830 ATTGTATCGATACAT
1 ATTGTATCGATACAT
3300845 TGCTTCAAAC
Statistics
Matches: 89, Mismatches: 19, Indels: 19
0.70 0.15 0.15
Matches are distributed among these distances:
18 3 0.03
19 21 0.24
20 49 0.55
21 2 0.02
22 5 0.06
23 5 0.06
24 3 0.03
25 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.17, T:0.34
Consensus pattern (20 bp):
ATTGTATCGATACATGCACA
Found at i:3302457 original size:3 final size:3
Alignment explanation
Indices: 3302436--3302469 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
3302426 CATCAAAGAC
* *
3302436 GAT GAA GAT GAT AAT GAT GAT GAT GAT GAT GAT G
1 GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT GAT G
3302470 TTGACTCAGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.29
Consensus pattern (3 bp):
GAT
Found at i:3312910 original size:475 final size:476
Alignment explanation
Indices: 3311424--3313398 Score: 2362
Period size: 475 Copynumber: 4.2 Consensus size: 476
3311414 TAAGACAACC
* * * * * * * *
3311424 ATGAGAAGATTATGCTTATGGTGCCTTATCCTAAAAAGAATGAGGATTAGTATGACTACTCAAGT
1 ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * **
3311489 TTGTCTTATTTTAGAGATAAACTTTGATTCTATCACAAATGGTGGAAA-AAAATGTTTTTCTTAT
66 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA-GCTTTTCTTGC
* * *
3311553 GACACCAAAGCATCAATATCACGTTTCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
130 GAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
* * * * * * *
3311618 AAAAATAGAGAATGTTACGAG-TTCTCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAA
195 AAGAATGGAGACTATTACGAGAAT-TAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTT-A
*
3311682 AGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
258 AGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * *
3311747 GGAGAATATATTTATAGTGCTTAATCACAAAATGAATGAAGATCAATACTGGAATCCATGTTTAT
323 GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
* * * * *
3311812 CTCT-TTTGAGGCACAAACATAGTCTTTACAAAAGTTGGGGGGAAGAAAGCCTTTCTTGC-GAAA
388 CT-TATTTGAGGCAC-GACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAAA
* *
3311875 CTAAAGCATGAAT-T-TTGTCAATCCTA
451 CCAAAGCATCAATATCTTGT--ATCCTA
* * * *
3311901 ATGAGAAGACTATGTTTATGGTACCTAATTCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
1 ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* * *
3311966 TTGCCTTATTTAAGAGATAAACTTTGATTTTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC-
66 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
* * *
3312030 AACACCGAAGC-TCCAATATCATGTATCCTAATGAA-GGAATGTGTTCTTAGATCCCAATCTTGA
131 AA-ACCAAAGCAT-CAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGA
* * * * * * *
3312093 AAAGAACGGAGACTATTATGAAAATCA-ATGCTTGTCATATTTAAGGTATGAATTTTTATTTTTA
194 AAAGAATGGAGACTATTACGAGAATTAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAA
* * * * * *
3312157 GAAAAATAGCGTAAAGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCATTCATCTTAATAA
259 G-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * *
3312222 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT-C-ATAATCCATATTTGT
323 GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
*
3312285 CTTATTTGAGGCACGAGCTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTCTT-TTG-TGAAA
388 CTTATTTGAGGCACGA-CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCT-TTCTTGCAGAAA
* * * *
3312348 CCAAAGCGTCAATATCATGTATACTT
451 CCAAAGCATCAATATCTTGTATCCTA
* *
3312374 ATGAGAACACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGT-TGATTATTCATGT
1 ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * *
3312438 TTGTCTTATTTAAGAGACAAACTTTGATTCCAAT-AGAAACGGTTGAAAGAAAAGCTTTTTTTGC
66 TTGTCTTATTTAAGAGACAAACTTTGATT-CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC
* * * * **
3312502 GAAACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATTTGTTTTTGGTTCCCAATCAAGAA
130 GAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
* * * * * *
3312567 AAGAATGGAGACTGTTATGAGAATTAG-TGCTTGCCTTATTTAAGGGATCAACTTTGATTTTAAG
195 AAGAATGGAGACTATTACGAGAATTAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAG
* * * *
3312631 TAAAATGGGGTAAAGAAAAGATTTCCATG-AAACAGAAAATCATTAGTATCATTTATCCTAATGA
260 -AAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AGAAAATCATCAATATCATTTATCCTAATGA
* *
3312695 GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATAAAAATCATTACTAGAATCCATGTTTGT
323 GGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGT
*
3312760 CTTATTTGAGCCACAGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAG-AAC
388 CTTATTTGAGGCAC-GACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAAAC
* *
3312824 CAAAGCGTCAATATCTTGTATCCTT
452 CAAAGCATCAATATCTTGTATCCTA
* * * * *
3312849 ATGAGAAGACTAAGTTTATGATGTCTAATCTTGAAAA-AATAGGGATTAGTATGAGTATTCATGT
1 ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * *
3312913 TTGCCTTATTTAAGAGTCAAACTTTGACTT-TATCAAAAATGATGGAAAAAAAACCTTTTCTTGC
66 TTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGC
* * * *
3312977 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGAGAATCTGTTCTTGGTTCCCAATCTTGAA
130 GAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAA
* * * *
3313042 AAGAATGTAGACTATTACGAGAA-TCGATGCTTGTCATACTTAAGGGATGAATTTTGATTTTAGG
195 AAGAATGGAGACTATTACGAGAATTAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTA-A
* *
3313106 GAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAA
259 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * * *
3313171 TAGAATGTGTTTACACTGCCTAAGCACAAAGTGAATGAAGATCATTACTAGAATCCATGTTTGTC
324 GAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
** * * *
3313236 ACATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAA-AATGGCTTTCTTGCA-AAACC
389 TTATTTGAGGCACG-ACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAAACC
* *
3313299 AAAACATCAATATCGTGTATCCTA
453 AAAGCATCAATATCTTGTATCCTA
* * * * * * * *
3313323 AAGAGAAGACTATGCTTATGGTGCCTAATCCTAAAAAGAATTGGGCTGAGCATGAGC-ATTCATG
1 ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGA-CTATTCATG
3313387 TTTGTCTTATTT
65 TTTGTCTTATTT
3313399 TTGTCTTATT
Statistics
Matches: 1283, Mismatches: 183, Indels: 66
0.84 0.12 0.04
Matches are distributed among these distances:
472 97 0.08
473 296 0.23
474 93 0.07
475 604 0.47
476 52 0.04
477 137 0.11
478 4 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (476 bp):
ATGAGAAGACTAAGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCG
AAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAA
AGAATGGAGACTATTACGAGAATTAGATGCTTGTCATATTTAAGGGATGAATTTTGATTTTAAGA
AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
GAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTT
ATTTGAGGCACGACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAGAAACCAAA
GCATCAATATCTTGTATCCTA
Found at i:3314330 original size:159 final size:158
Alignment explanation
Indices: 3314167--3314826 Score: 426
Period size: 159 Copynumber: 4.2 Consensus size: 158
3314157 AGAATCGACG
* **
3314167 TTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
1 TTTGTCTTATTTAAGGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
* * *
3314232 AAAAGAAAATCATCAGTATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAA
66 AAAACAAAAGCATCAATATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAA
3314297 ATGAATGAAGATCATTACTAGAATCTATA
131 A-GAATGAAGATCATTACTAGAATCTATA
* * * * * * ** *
3314326 TTTGTCTCATTTAAGGCACAAACTTAGACTTTATA--AAAAT-TGGTGAGAA-AAAAGCCTTTCT
1 TTTGTCTTATTTAAGGGACAAACTTTGATTTTA-AGGAAAATAAGG-CA-AAGAAAAGATTTTCA
** * * * * * *
3314387 TGTGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTAG-GTTTATGGTGCCTAATC-
63 TGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAAAAAT-GTGTTTATAGTGCCTAATCA
** * * *
3314450 CTTAAAAGAATGGGGATTAGTA-T-GACTAT-TCGTA
127 C--AAAAGAATGAAGATCATTACTAGA--ATCT-ATA
* * * ** * ** *
3314484 TTTGTCTTCTTTAAGAGACAAACTTTGATTCT-ATCAAAA-AAGGGGGAAAGAAAACCTTTTCTT
1 TTTGTCTTATTTAAGGGACAAACTTTGATTTTAAGGAAAATAA--GGCAAAGAAAAGATTTTCAT
** * * * * * * * * *
3314547 GTGACACCAAAGCATCAATGTCATGTATCCTAATGA-AAGAAATGCGTTTTTGGTTCCTAATCTT
64 GCAAAACAAAAGCATCAATATCATTTATCCTAATGAGAA-AAATGTGTTTATAGTGCCTAATC-A
* * * ** ** * * *
3314611 GAAAAAAATGGATTTTGTTACGAGAATCAATG
127 CAAAAGAATGAAGATCATTACTAGAATCTATA
* * ** *
3314643 CTTGTCTTACTTAAGGGATTAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
1 TTTGTCTTATTTAAGGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
* * * * * * * *
3314708 AAAAGAAAATCATCAATATCATTTATCCTAGTGGGGAAAACGTGTTTAAAGTGCCCAATCACAAA
66 AAAACAAAAGCATCAATATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAA
* *
3314773 ATGAATGAAGATCATTACTAGAATCCATG
131 A-GAATGAAGATCATTACTAGAATCTATA
* *
3314802 TTTGTCTCATTTGAGGGACAAACTT
1 TTTGTCTTATTTAAGGGACAAACTT
3314827 AGACTTTACA
Statistics
Matches: 369, Mismatches: 106, Indels: 52
0.70 0.20 0.10
Matches are distributed among these distances:
156 3 0.01
157 5 0.01
158 118 0.32
159 230 0.62
160 9 0.02
161 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.32
Consensus pattern (158 bp):
TTTGTCTTATTTAAGGGACAAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC
AAAACAAAAGCATCAATATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCACAAA
AGAATGAAGATCATTACTAGAATCTATA
Found at i:3314603 original size:476 final size:476
Alignment explanation
Indices: 3314035--3314994 Score: 1390
Period size: 476 Copynumber: 2.0 Consensus size: 476
3314025 ACGAACTTCA
* * * * *
3314035 ATTCTATCAAAATCAGTGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCTATGTCATGTATC
1 ATTCTATCAAAATAAGGGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCATGTATC
* *
3314100 CTAATGAAAGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAACAAAGACTACT-ATA-AGAATC
66 CTAATGAAAGAAATGCGTTTTTGGTTCCCAATCATGAAAA-AA-AAAGA-TACTGATACAGAATC
* * * *
3314163 GACGTTTGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
128 AACGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC
* * * *
3314228 ATGCAAAAGAAAATCATCAGTATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCA
193 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAAACGTGTTTAAAGTGCCCAATCA
*
3314293 CAAAATGAATGAAGATCATTACTAGAATCTATATTTGTCTCATTTAAGGCACAAACTTAGACTTT
258 CAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAAGGCACAAACTTAGACTTT
* * *
3314358 A-TAAAAATTGGTGAGAAA-AAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTCTATCCTAA
323 ACAAAAAATTGCTG-GAAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTATCCTAA
* * * *
3314421 TGAGAAGACTAGGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGACTATTCGTATT
387 TGAGAAGACTAGGTTTACGGTGCCGAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATT
*
3314486 TGTCTTCTTTAAGAGACAAACTTTG
452 TGTCTTATTTAAGAGACAAACTTTG
*
3314511 ATTCTATCAAAA-AAGGGGGAAAGAAAACCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT
1 ATTCTATCAAAATAA-GGGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCATGTAT
* * ** ** *
3314575 CCTAATGAAAGAAATGCGTTTTTGGTTCCTAATCTTGAAAAAAATGGATTTTGTTACGAGAATCA
65 CCTAATGAAAGAAATGCGTTTTTGGTTCCCAATCATGAAAAAAAAAGATACTGATAC-AGAATCA
* * *
3314640 ATGCTTGTCTTACTTAAGGGATTAATTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
129 ACGCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA
* * *
3314705 TGCAAAAGAAAATCATCAATATCATTTATCCTAGTGGGGAAAACGTGTTTAAAGTGCCCAATCAC
194 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAAACGTGTTTAAAGTGCCCAATCAC
* * *
3314770 AAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGGACAAACTTAGACTTTA
259 AAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAAGGCACAAACTTAGACTTTA
* * *
3314835 CAAAAAATTGCTGGAAAGAAAGCCTTTCTTGTGAAACCAAAGTATCAATGTTATCTATCCTAATG
324 CAAAAAATTGCTGGAAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTATCCTAATG
* * * * *
3314900 AGAAGATTATGTTTACGGTGCCGAATCCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTG
389 AGAAGACTAGGTTTACGGTGCCGAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTG
3314965 TCTTATTTAAGAGACAAACTTTG
454 TCTTATTTAAGAGACAAACTTTG
3314988 ATTCTAT
1 ATTCTAT
3314995 GATGAAAAGA
Statistics
Matches: 429, Mismatches: 49, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
473 2 0.00
474 5 0.01
475 3 0.01
476 281 0.66
477 138 0.32
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (476 bp):
ATTCTATCAAAATAAGGGGAAAGAAAACCTTTTCTTATGACACCAAAGCATCAATGTCATGTATC
CTAATGAAAGAAATGCGTTTTTGGTTCCCAATCATGAAAAAAAAAGATACTGATACAGAATCAAC
GCTTGTCTTACTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATG
CAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAAAACGTGTTTAAAGTGCCCAATCACAA
AATGAATGAAGATCATTACTAGAATCCATATTTGTCTCATTTAAGGCACAAACTTAGACTTTACA
AAAAATTGCTGGAAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATCTATCCTAATGAG
AAGACTAGGTTTACGGTGCCGAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATATTTGTC
TTATTTAAGAGACAAACTTTG
Found at i:3314938 original size:159 final size:158
Alignment explanation
Indices: 3314242--3314938 Score: 468
Period size: 159 Copynumber: 4.4 Consensus size: 158
3314232 AAAAGAAAAT
* * * * * *
3314242 CATCAGTATCATTTATCCTAATGAGAAAAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAA
1 CATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGAATGAA
* * *
3314306 GATCATTACTAGAATCTATATTTGTCTCATTTAAGGCACAAACTTAGACTTTATAAAAATTGGTG
65 GATCATTACTAGAATCCATATTTGTCTCATTTAAGGGACAAACTTAGACTTTAAAAAAATTGGTG
3314371 AGAAA-AAAGCCTTTCTTGTGAAACCAAAG
130 -GAAAGAAAGCCTTTCTTGTGAAACCAAAG
* * * * **
3314400 CATCAATATCGTCTATCCTAATGAGAAGACTAGGTTTATGGTGCCTAATCCTTAAAAGAATGGGG
1 CATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGAAG
* * * * * *
3314465 ATTAGTA-T-GACTATTCGTATTTGTCTTC-TTTAAGAGACAAACTTTGA-TTCTATCAAAAAA-
66 ATCATTACTAGA--ATCCATATTTGTC-TCATTTAAGGGACAAACTTAGACTT-TA--AAAAAAT
* * *
3314525 -GGGGGAAAGAAAACCTTTTCTTGTGACACCAAAG
125 TGGTGGAAAGAAAGCC-TTTCTTGTGAAACCAAAG
* * * * *
3314559 CATCAATGTCATGTATCCTAATGA-AAGAA-ATGCGTTTTTGGTTCCTAATCTTGAAAAA-AATG
1 CATCAATATCATCTATCCTAATGAGAAGAATAT--GTTTATGGTGCCTAATCCT-AAAAAGAATG
* ** ** * * ** * * ** * * * * **
3314621 GATTTTGTTACGAGAATCAATGCTTGTCTTACTTAAGGGATTAATTTTGATTTTAAGGAAAATAA
63 AAGATCATTACTAGAATCCATATTTGTCTCATTTAAGGGACAAACTTAGACTTTAA-AAAAATTG
* ** * ** ** *
3314686 G-GCAAAGAAAAGATTTTCATGCAAAAGAAAAT
127 GTGGAAAG-AAAGCCTTTCTTGTGAAACCAAAG
* * * ** ** * *
3314718 CATCAATATCATTTATCCTAGTGGGGAA-AACGTGTTTAAAGTGCCCAATCAC-AAAATGAATGA
1 CATCAATATCATCTATCCTAAT-GAGAAGAATATGTTTATGGTGCCTAATC-CTAAAAAGAATGA
* * *
3314781 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGGACAAACTTAGACTTTACAAAAAATTGC
64 AGATCATTACTAGAATCCATATTTGTCTCATTTAAGGGACAAACTTAGACTTTA-AAAAAATTGG
3314846 TGGAAAGAAAGCCTTTCTTGTGAAACCAAAG
128 TGGAAAGAAAGCCTTTCTTGTGAAACCAAAG
* * * * * *
3314877 TATCAATGTTATCTATCCTAATGAGAAGATTATGTTTACGGTGCCGAATCCTAAAAAGAATG
1 CATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATG
3314939 GGGATTAGTA
Statistics
Matches: 393, Mismatches: 117, Indels: 57
0.69 0.21 0.10
Matches are distributed among these distances:
156 2 0.01
157 10 0.03
158 110 0.28
159 242 0.62
160 24 0.06
161 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.31
Consensus pattern (158 bp):
CATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCTAAAAAGAATGAAG
ATCATTACTAGAATCCATATTTGTCTCATTTAAGGGACAAACTTAGACTTTAAAAAAATTGGTGG
AAAGAAAGCCTTTCTTGTGAAACCAAAG
Found at i:3315041 original size:69 final size:69
Alignment explanation
Indices: 3314930--3315065 Score: 245
Period size: 69 Copynumber: 2.0 Consensus size: 69
3314920 CCGAATCCTA
* *
3314930 AAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
1 AAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
3314995 GATG
66 GATG
*
3314999 AAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTAT
1 AAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
3315064 GA
66 GA
3315066 AAAATGGTGG
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 64 1.00
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.39
Consensus pattern (69 bp):
AAAAGAATGAGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
GATG
Found at i:3316906 original size:476 final size:476
Alignment explanation
Indices: 3316132--3318371 Score: 2924
Period size: 476 Copynumber: 4.7 Consensus size: 476
3316122 TCCTTTGAGG
* * * * * * *
3316132 GACAAACTGTGATTCTATCTAAACCGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* * * * * ** * *
3316197 TGTCATGTATCCTATTA-AAGGGAATGCGTTTTTCGTTCCCAAT-TAGGAAAAGAATAAAAACTA
66 TGTCATGTATCCTA-AAGAAGGGAATGTGTTTTTGGTTCCAAATCT-TGAAAAGAATGGAGACTG
* * * * * *
3316260 TTACGAGAATCAAAGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAAG
129 TTACAAGAATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAG
* *
3316325 AAAAGATTTTCATGCAAAAAAAAAGTAATCAATATCATTTATTCTAATGAGGAGAATGTGTTTAT
194 AAAAGATTTTCATGCAAAAGAAAA-TAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * * *
3316390 AGTACTTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGTATG
258 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACG
*** * * *
3316455 AACTTAGACTTTACAAAAATTGGCAATGAA-AATGCCTTTCCTGCAAAACCAAAGCATCAATATC
323 AACTTAGACTTTACAAAAATTGG-TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATC
* *
3316519 GTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAA-GAATAGGGATTAACATG
387 GTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAACGAATAGGGATTAACAAG
**
3316583 ACTATTTGTGTTTGTCTTATTTAAGA
451 ACTATTCATGTTTGTCTTATTTAAGA
* * ** * *
3316609 GATAAACTTTGATTCTATAAAAAACGGGGGAAATAAAACCTTTTCTTGCCACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* * *
3316674 TGTCACGTATCCTAAAGAAGTGAATGTGTTCTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTT
66 TGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTT
* * * * * *
3316739 ACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATTTTAAAGAAATTAAGGCAAAGAT
131 ACAAGAATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAA
* * *
3316804 AATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGT
196 AAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
*
3316869 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACAAAC
261 GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAAC
* * * *
3316934 TTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCTTGCGAAACAAAAGCATTAATTTCGTCT
326 TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCT
* **
3316999 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAACGAATGGGGATTAGTAAGACTAT
391 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAACGAATAGGGATTAACAAGACTAT
3317064 TCATGTTTGTCTTATTTAAGA
456 TCATGTTTGTCTTATTTAAGA
* * * ** *
3317085 GACAAACTTTGATTTTATCAAAAACAATGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* * * ** ** *
3317150 CGTCATGTGTCCT-AAGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGACTAT
66 TGTCATGTATCCTAAAG-AAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGT
* * * *
3317214 TACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGA
130 TACAAGAATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGA
* * *
3317279 AAAGATTTTCACGCAAAAGAAAATAATCTATATCATTTATCCTAGTGAGGAGAATGTGTTTATAG
195 AAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* *
3317344 TGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGTGGCACGAA
260 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAA
* * * * * * *
3317409 TTTAGAATTTACAAAAATTGG-CGGAGGAATGCCTTTCTTGTGAAACCAAAACATCAATATCGTC
325 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTC
* * *
3317473 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAA-GAATAAGGATTAACATGACT
390 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAACGAATAGGGATTAACAAGACT
*
3317537 ATTCGTGTTTGTCTTATTTAAGA
454 ATTCATGTTTGTCTTATTTAAGA
* * * * *
3317560 GATACACTTTGATTCTATCAAAAACGAGGGAAATAAAACCTTTTCTTGCAACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
* *
3317625 TGTCACGTATCCTAAAGAA--G-A-GTGTTCTTT-GTTCCAAATCTTGAAAAGAATGGAAACTGT
66 TGTCATGTATCCTAAAGAAGGGAATGTGTT-TTTGGTTCCAAATCTTGAAAAGAATGGAGACTGT
* * * * * *
3317685 TACAAGAATCGATGGCTATCATATTTAAGGGATGAAATTTGATTTTAAAGAAAGTAAGGCAAAGA
130 TACAAGAATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGA
* * * *
3317750 TAATATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAAGAGAATGTATTTATAG
195 AAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* *
3317815 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTGTCATTTGTGGCACAAA
260 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAA
* * *
3317880 CTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTC
325 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTC
* * * **
3317945 TATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAACAAATGGGGATTAGTAAGACTA
390 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAACGAATAGGGATTAACAAGACTA
3318010 TTCATGTTTGTCTTATTTAAGA
455 TTCATGTTTGTCTTATTTAAGA
* * *** * * *
3318032 GACAAACTTTGATTCTATCAAATACAGGGGAAAGAAATTTTTTTTTTTGCGACACCTAGGCATCA
1 GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAA-ACCTTTTCTTGCGACACCAAAGCATCA
* * * *
3318097 ATGTCATGTATCCTTATGAAGGGAATGTGTTTTTGATTTCC-AATCTTGAAAAGACTGGAGACTG
65 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG-GTTCCAAATCTTGAAAAGAATGGAGACTG
* * * * *
3318161 TTATAAGAATCGGTG-GTCGTCTTATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAAA
129 TTACAAGAATCGATGCCT-GTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAA
* * * *
3318225 GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGATTGTGTTTAT
193 GAAAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * *
3318290 AGTGCCTAATCACAAAATGATTGAAGATCATTAGTAGAATCCATATTTGTCTCATTTGAGGCACG
258 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACG
3318355 AACTTAGACTTTACAAA
323 AACTTAGACTTTACAAA
3318372 TATCGTGTAT
Statistics
Matches: 1521, Mismatches: 224, Indels: 36
0.85 0.13 0.02
Matches are distributed among these distances:
471 224 0.15
472 144 0.09
473 38 0.02
475 186 0.12
476 537 0.35
477 387 0.25
478 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (476 bp):
GACAAACTTTGATTCTATCAAAAACAAGGGAAAGAAAACCTTTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTT
ACAAGAATCGATGCCTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAA
AAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAAC
TTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTCT
ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAACGAATAGGGATTAACAAGACTAT
TCATGTTTGTCTTATTTAAGA
Found at i:3317375 original size:159 final size:158
Alignment explanation
Indices: 3316259--3318346 Score: 800
Period size: 159 Copynumber: 13.2 Consensus size: 158
3316249 AATAAAAACT
* * * * *
3316259 ATTACGAGAATCAAAGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAA
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAATAGGGCAAA
* * *
3316324 GAAAAGATTTTCATGCAAAAAAAAAGTAATCAATATCATTTATTCTAATGAGGAGAATGTGTTTA
65 GAAAAGATTTTCATGCAAAACAAAAG-CATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
3316389 TAGTACTTAATCATAAAATGAATGAAGATC
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * * ** * * * * * *
3316419 ATTACTAGAATCCATGTTTGTCTCATTTGTGGTATGAACTTAGACTTTACAAAAAT-TGGCAATG
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGGCAAAG
** * * * * * * *
3316483 AAAATGCCTTTCCTGCAAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTAT
66 AAAA-GATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
3316548 GGTGCCTAATCATGAAAA-GAAT-AGGGATT
130 GGTGCCTAATCAT-AAAATGAATGA-AGATC
** * ** *** * * * ** *
3316577 AACATGACTATTTGTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGGGGAAA
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAATAGGGCAAA
* ** * * * * * ** * * *
3316642 TAAAACCTTTTCTTGCCACACCAAAGCATCAATGTCACGTATCCTAAAGAAGTGAATGTGTTCT-
65 GAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT-TA
* * * *
3316706 TGGTTCCAAATCTTGAAAA-GAATGGAGA-C
129 TGGTGCCTAATCAT-AAAATGAATGAAGATC
* * * ** * * * * *
3316735 TGTTACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATTTTAAAGAAATTAAGGCAA
1 -ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AAAATAGGGCAA
* * * * ** *
3316800 AGATAATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTATTTA
64 AGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
3316865 TAGTGCCTAATCACAAAATGAATGAAGATC
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * * ** * ** * * * * **
3316895 ATTACTAGAATCCATGTTTGTCTCATTTGTGGCACAAACTTAGACTTTACAAAAATTGGTGGGAA
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGG-GCAAA
* * * * * * * * *
3316960 G-AAAG-TCTTTCTTGCGAAACAAAAGCATTAATTTCGTCTATCCTAATGAGAAGACTATGTTTA
65 GAAAAGAT-TTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * ** *
3317023 TGGTGCCTAATCCTAAAACGAATGGGGATT
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * * * * ** *
3317053 AGTAAGACTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAACA-ATGG-
1 ATTACGA-GAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA--AAAAA-ATAGGGC
* * * ** * *
3317115 AAAGAAAAGCTTTTCTTATG--ACACTAAAGCATCAACGTCATGTGTCCTAA-GAAAGG-GAATG
62 AAAGAAAAGATTTTC--ATGCAAAACAAAAGCATCAATATCATTTATCCTAATG--AGGAGAATG
* * * * *
3317176 TGTTTTTGGTTCCCAATCA-AGAAAAGAATAAAGA-C
123 TGTTTATGGTGCCTAATCATA-AAATGAATGAAGATC
* * *
3317211 TATTACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAA
1 -ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AAAATAGGGCAA
* * ** * *
3317276 AGAAAAGATTTTCACGCAAAAGAAAATAATCTATATCATTTATCCTAGTGAGGAGAATGTGTTTA
64 AGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
*
3317341 TAGTGCCTAATCATAAAATGAATGAAGATC
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * * * ** * * * * * **
3317371 ATTACTAGAATCCATGTTTCTCTCATTTGTGGCACGAA-TTTAGAATTTACAAAAAT-TGGCGGA
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTT-GATTTTAAAAAAATAGGGCAAA
* * ** * * * * * * * *
3317434 GGAATGCCTTTCTTGTGAAACCAAAA-CATCAATATCGTCTATCCTAATGAGAAGACTATGTTTA
65 GAAAAGATTTTCATG-CAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
3317498 TGGTGCCTAATCTTGAAAA-GAAT-AAGGATT
129 TGGTGCCTAATCAT-AAAATGAATGAA-GATC
** * * * * * * **
3317528 AACATGACTATTC-GTGTTTGTCTTATTTAAGAGAT-ACACTTTGATTCTATCAAAAACGAGGG-
1 ATTACGA-GAATCAATGTTTGTCTTATTTAAGGGATGA-ACTTTGATT-T-TAAAAAAATAGGGC
* ** * * * * ** *
3317590 AAATAAAACCTTTTCTTGCAACACCAAAGCATCAATGTCACGTATCCTAA--AGAAG-A-GTGTT
62 AAAGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTT
* * * *
3317651 CT-TTGTTCCAAATCTTGAAAA-GAATGGAA-A-C
127 -TATGGTGCCTAATCAT-AAAATGAAT-GAAGATC
* * * ** * * * * *
3317682 TGTTACAAGAATCGATGGCTATCATATTTAAGGGATGAAATTTGATTTTAAAGAAAGTAAGGCAA
1 -ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-AAAATAGGGCAA
* * * ** * *
3317747 AGATAATATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAAGAGAATGTATTTA
64 AGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* *
3317812 TAGTGCCTAATCACAAAATGAATGAAGATC
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * * * ** * ** * * ** * **
3317842 ATTACTAGAATCCATGTTTGTGTCATTTGTGGCACAAACTTAGACTTTACCAAAATTGGTGGGAA
1 ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGG-GCAAA
** * * * * ** * * * * *
3317907 G-AAAGCCTTTCTTGCGAAACCAAAGCATCAATTTTGTCTATCCTAATAAGAAGACTATGTTTAT
65 GAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* ** ** *
3317971 GGTGCCTAATCCTAAAACAAATGGGGATT
130 GGTGCCTAATCATAAAATGAATGAAGATC
* * * * * ** * * * * *
3318000 AGTAAGACTATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAATACAGGGGAA
1 ATTACGA-GAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAAAAATAGGGCAA
*** ** * * ** * * * *
3318064 AGAAATTTTTTTTTTTGCGACACCTAGGCATCAATGTCATGTATCCTTATGAAGG-GAATGTGTT
64 AGAAA-AGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGTT
* * * * * *
3318128 TTTGATTTCC-AATCTTGAAAA-GACTGGAGA-C
127 TATG-GTGCCTAATCAT-AAAATGAATGAAGATC
* ** ** * * * * *
3318159 TGTTATAAGAATCGGTGGTCGTCTTATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCAA
1 -ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAA-AAAAATAGGGCAA
* * * * *
3318224 AGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGATTGTGTTTA
64 AGAAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * *
3318289 TAGTGCCTAATCACAAAATGATTGAAGATC
129 TGGTGCCTAATCATAAAATGAATGAAGATC
* * *
3318319 ATTA-GTAGAATCCATATTTGTCTCATTT
1 ATTACG-AGAATCAATGTTTGTCTTATTT
3318347 GAGGCACGAA
Statistics
Matches: 1346, Mismatches: 503, Indels: 159
0.67 0.25 0.08
Matches are distributed among these distances:
153 3 0.00
154 10 0.01
155 88 0.07
156 5 0.00
157 100 0.07
158 373 0.28
159 596 0.44
160 159 0.12
161 12 0.01
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.32
Consensus pattern (158 bp):
ATTACGAGAATCAATGTTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAAAAATAGGGCAAAG
AAAAGATTTTCATGCAAAACAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATG
GTGCCTAATCATAAAATGAATGAAGATC
Found at i:3317870 original size:947 final size:951
Alignment explanation
Indices: 3316132--3318371 Score: 3544
Period size: 947 Copynumber: 2.4 Consensus size: 951
3316122 TCCTTTGAGG
* * * * * *
3316132 GACAAACTGTGATTCTATCTAAACCGATGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAA
* * * * * *
3316197 TGTCATGTATCCTATTAAAGGGAATGCGTTTTTCGTTCCCAATTAGGAAAAGAATAAAAACTATT
66 TGTCATGTATCCTATGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGACTATT
* *
3316262 ACGAGAATCAAAGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGTAAAGAA
131 ACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* *
3316327 AAGATTTTCATGCAAAAAAAAAGTAATCAATATCATTTATTCTAATGAGGAGAATGTGTTTATAG
196 AAGATTTTCATGCAAAAGAAAA-TAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
3316392 TACTTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGTATGAA
260 TGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAA
*
3316457 CTTAGACTTTACAAAAATTGGCAATGAAAATGCCTTTCCTGCAAAACCAAAGCATCAATATCGTC
325 CTTAGACTTTACAAAAATTGGCAATGAAAATGCCTTTCCTGCAAAACCAAAACATCAATATCGTC
*
3316522 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAAGAATAGGGATTAACATGACTA
390 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAAGAATAAGGATTAACATGACTA
* *
3316587 TTTGTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGGGGGAAATAAAACCTTT
455 TTCGTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGAGGGAAATAAAACCTTT
*
3316652 TCTTGCCACACCAAAGCATCAATGTCACGTATCCTAAAGAAGTGAATGTGTTCTTGGTTCCAAAT
520 TCTTGCAACACCAAAGCATCAATGTCACGTATCCTAAAGAAG-GAATGTGTTCTTGGTTCCAAAT
*
3316717 CTTGAAAAGAATGGAGACTGTTACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATT
584 CTTGAAAAGAATGGAAACTGTTACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATT
*
3316782 TTAAAGAAATTAAGGCAAAGATAATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTA
649 TTAAAGAAAGTAAGGCAAAGATAATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTA
*
3316847 ATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
714 ATGAAGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
*
3316912 TTGTCTCATTTGTGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCTTGCGA
779 TTGTCTCATTTGTGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGA
* *
3316977 AACAAAAGCATTAATTTCGTCTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAC
844 AACAAAAGCATCAATTTCGTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAAC
*
3317042 GAATGGGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGA
909 AAATGGGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGA
*
3317085 GACAAACTTTGATTTTATCAAAAACAATGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAA
1 GACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAA
* * *
3317150 CGTCATGTGTCCTAAGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGACTATT
66 TGTCATGTATCCTATGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGACTATT
*
3317215 ACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAAGAAAATAGGGCAAAGAA
131 ACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
* * *
3317280 AAGATTTTCACGCAAAAGAAAATAATCTATATCATTTATCCTAGTGAGGAGAATGTGTTTATAGT
196 AAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
* *
3317345 GCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTCTCTCATTTGTGGCACGAAT
261 GCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAAC
* * * * **
3317410 TTAGAATTTACAAAAATTGGC--GGAGGAATGCCTTTCTTGTGAAACCAAAACATCAATATCGTC
326 TTAGACTTTACAAAAATTGGCAATGA-AAATGCCTTTCCTGCAAAACCAAAACATCAATATCGTC
*
3317473 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAAGGATTAACATGACTA
390 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAAGAATAAGGATTAACATGACTA
* *
3317538 TTCGTGTTTGTCTTATTTAAGAGATACACTTTGATTCTATCAAAAACGAGGGAAATAAAACCTTT
455 TTCGTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGAGGGAAATAAAACCTTT
*
3317603 TCTTGCAACACCAAAGCATCAATGTCACGTATCCTAAAGAA-G-A-GTGTTCTTTGTTCCAAATC
520 TCTTGCAACACCAAAGCATCAATGTCACGTATCCTAAAGAAGGAATGTGTTCTTGGTTCCAAATC
*
3317665 TTGAAAAGAATGGAAACTGTTACAAGAATCGATGGCTATCATATTTAAGGGATGAAATTTGATTT
585 TTGAAAAGAATGGAAACTGTTACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATTT
*
3317730 TAAAGAAAGTAAGGCAAAGATAATATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAA
650 TAAAGAAAGTAAGGCAAAGATAATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTAA
3317795 TGAAGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
715 TGAAGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
3317860 TGTGTCATTTGTGGCACAAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
780 TGTCTCATTTGTGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
* *
3317925 ACCAAAGCATCAATTTTGTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAACA
845 ACAAAAGCATCAATTTCGTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAACA
3317990 AATGGGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGA
910 AATGGGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGA
* ** ** * * *
3318032 GACAAACTTTGATTCTATCAAATACAGGGGAAAG-AAATTTTTTTTTTTGCGACACCT-AGGCAT
1 GACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTAT--GACA-CTAAAGCAT
* * ** * **
3318095 CAATGTCATGTATCCTTATG-AAGGGAATGTGTTTTTGATTTCCAATCTTGAAAAGACTGGAGAC
63 CAATGTCATGTATCC-TATGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGAC
* ** * * * *
3318159 TGTTATAAGAATC-GGTGGTCGTCTTATTTAAAGGATGAATTTTGATTTTAAGGAAAATAGGGCA
127 TATTACGAGAATCAAG-GCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCA
* * * *
3318223 AAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAAGAGATTGTGTTT
191 AAGAAAAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * *
3318288 ATAGTGCCTAATCACAAAATGATTGAAGATCATTAGTAGAATCCATATTTGTCTCATTTGAGGCA
256 ATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCA
3318353 CGAACTTAGACTTTACAAA
321 CGAACTTAGACTTTACAAA
3318372 TATCGTGTAT
Statistics
Matches: 1181, Mismatches: 100, Indels: 17
0.91 0.08 0.01
Matches are distributed among these distances:
946 10 0.01
947 403 0.34
948 248 0.21
949 6 0.01
950 2 0.00
951 197 0.17
952 119 0.10
953 196 0.17
ACGTcount: A:0.37, C:0.14, G:0.17, T:0.32
Consensus pattern (951 bp):
GACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTTTCTTATGACACTAAAGCATCAA
TGTCATGTATCCTATGAAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAAGAATAAAGACTATT
ACGAGAATCAAGGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAATAGGGCAAAGAA
AAGATTTTCATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
GCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAAC
TTAGACTTTACAAAAATTGGCAATGAAAATGCCTTTCCTGCAAAACCAAAACATCAATATCGTCT
ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAAGAATAAGGATTAACATGACTAT
TCGTGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATAAAAAACGAGGGAAATAAAACCTTTT
CTTGCAACACCAAAGCATCAATGTCACGTATCCTAAAGAAGGAATGTGTTCTTGGTTCCAAATCT
TGAAAAGAATGGAAACTGTTACAAGAATCGATGCCTATCATATTTAAGGGATGAAATTTGATTTT
AAAGAAAGTAAGGCAAAGATAATATTTTCACGCAAAAGAAAATAATCAATATCATTTATCCTAAT
GAAGAGAATGTATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTT
GTCTCATTTGTGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAA
CAAAAGCATCAATTTCGTCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAATCCTAAAACAA
ATGGGGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGA
Found at i:3321676 original size:475 final size:474
Alignment explanation
Indices: 3320786--3322844 Score: 2636
Period size: 475 Copynumber: 4.3 Consensus size: 474
3320776 AAGACAACCT
* * * * * *
3320786 TGAGAAGACTATGTTTATGGTGCCTTATCTTGCAAAGAACGGGGATTAGTATGACTACTCAAGTT
1 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAA-TGGGATTAGTATGACTATTCATGTT
* * * * * *
3320851 TGCCTTATTTTAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA
65 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAAGGTGGAAAGAAAACCTTTTCTTGCGA
* * *
3320916 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTGGTT-CCAATCTTGAAAA
130 CACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGAGTTCTTGGTTCCCAATCTTAAAAA
* * *
3320980 GAATGGAGACTGTTA-AGAGAATCGATGCTTATCTTATTTAAGGGATGAATTTTGATTTAAAGGA
195 GAATGGAAACTGTTACA-AGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT-AAGGA
* * *
3321044 AAATAGTGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATA-AGG
258 AAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAA-AGAGG
* * * * *
3321108 AGAATCTATTTATACTGCCTAATTACAAAATTAATAAAGATCATTACTAGAATCCATGTTTGTCT
322 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCT
* * ** *
3321173 CATTTGTGGCACGAATTTAGACTTTACAAGGATTAGTGGGAAAAAAGCCTTTCTTGC-ATAACCA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGA-AACCA
3321237 AAGCATCAATATT-GTCAATCCTAA
451 AAGCATCAAT-TTCGTCAATCCTAA
* * *
3321261 TGAGAAGACTATGTTTATGGTGTCTAATCCTGAAAAGAATAGAGATTAGCATGACTATTCATGTT
1 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTT
* * * *
3321326 TGTCTTATTCAAGAGACAAATTTTGATTCTATCAAAAATATG-GGAAAGAAAACCTTTTCTTGCG
65 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAA-AGGTGGAAAGAAAACCTTTTCTTGCG
* * *
3321390 ACACCGAAGCATCAATGTCATGTATCCTAATAAAGGGAATGAGTTCTTGGCTCCAAATCTTAAAA
129 ACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGAGTTCTTGGTTCCCAATCTTAAAA
* * * *
3321455 AGAATGGAGACTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAGGGAA
194 AGAATGGAAACTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGGAA
* * * *
3321520 AATAGGGCAAAAAAAATATTTTCACGCAAAAGAAAATCACCAATATCATTTATCCTAAAGAGGAG
259 AATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAG
* **
3321585 AATGTGTTTATAGTGCCTAATCACAAAATGGACGAAGATCATTACTAGAATCCATGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
3321650 TTT-ATGGTACGAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAGCCAAA
389 TTTGA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAA
3321714 GCATCAATTTCGTCAATCCTAA
453 GCATCAATTTCGTCAATCCTAA
* *
3321736 TGAGCAA-ACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGCATTAGTATGACTATTCATGTT
1 TGAG-AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTT
3321800 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAGAAAAAGGTGGAAAGAAAACCTTTTCTTGCG
65 TGTCTTATTTAAGAGACAAACTTTGATTTTATCA-AAAAAGGTGGAAAGAAAACCTTTTCTTGCG
* * ** * *
3321865 ACACCAAAGCATTAATGTCATATATCCTAA-AAAAAGAATGCGTTTTTGGTTCCCAATCTTAAAA
129 ACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGAGTTCTTGGTTCCCAATCTTAAAA
* * * * *
3321929 AGAAT-GAAAATAGTTACCAGAATTGATGCTTGTCTTATTTAAGGGATGAACATTGTTTTTAAGG
194 AGAATGGAAACT-GTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTG-ATTTAAGG
* * * * **
3321993 AAAATAGGGCAGAGAATAGATTTCCATC-CAAAAGAAAATCATTAGTATCATTTATCCTAATCAG
257 AAAATAGGGCAAAGAAAAGATTTCCA-CGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAG
* * **
3322057 GAGAATGTGTTTATATTGCCTAATCACAAAATGAATAAAGATCATTACTAAAATCCATGTTACTC
321 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTC
* * * * * *
3322122 TCATTTGAGGCACAAACTTAGACTTTTCAAAAATTGATGGGAAGAAAGCCTTCCTTGCAAAACCA
386 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCA
* * *
3322187 AAGCATCTATTTCATCTATCCTAA
451 AAGCATCAATTTCGTCAATCCTAA
* * *
3322211 TGAGAAGACTGTGTTTATGGTGCCTAAT-CTCAAAAAGAATGGGCATTAGTAAGACTATTCATGT
1 TGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGG-ATTAGTATGACTATTCATGT
* * * *
3322275 TTGTCTAATTTAAAAGACAAACTTCGATTTTATCAAAAAAAGGTGGAAAGAAAACCTTTTCTTGT
64 TTGTCTTATTTAAGAGACAAACTTTGATTTTATC-AAAAAAGGTGGAAAGAAAACCTTTTCTTGC
* * * *
3322340 GACAACAAAGCATTAATGTCATGTATCCTAATTAAGGGAATGCA-TTTTTGGTTCCCAATCTTAA
128 GACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATG-AGTTCTTGGTTCCCAATCTTAA
* * * *
3322404 AAAGAATGAAAACTATTACGAGAATCGATGCTTGTCTTATTTTAGGGATGAACTTTGATTTTAAG
192 AAAGAATGGAAACTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTAAG
* * * * *
3322469 GAAAATCAAAGGGCAAAGAAAAGATTTTCATGTAAAAGAAAATCATCATTATCATTTATCCTAAT
256 GAAAAT---AGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAA
* * * * *
3322534 GAGGAGAATGTGTATATAGTGCCTATTCACAAAATAAATGAAGATCCTTACTAGAATCCATGTTT
318 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTT
* * * * * *
3322599 GTCTCATTTGAGGCAAGAACTTAGAGTTTAGAAAAATTGGTAGGAAAAAAGCATTTTTTTGCGAA
383 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC-CTTTCTTGCGAA
* *
3322664 ACCAAAGCATCAATATCATGC-ATCCTAA
447 ACCAAAGCATCAATTTCGT-CAATCCTAA
* *
3322692 TGAGAAGACTATGTTTATTGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
1 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATTAGTATGACTATTCATGTT
* * * *
3322757 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAATAACGGTAGAAGGAAAAGCC-TTTCTTGCG
65 TGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAAGGTGGAAAGAAAA-CCTTTTCTTGCG
3322821 ACACCAAAGCATCAATGTCATGTA
129 ACACCAAAGCATCAATGTCATGTA
3322845 ACCTTGAAAG
Statistics
Matches: 1378, Mismatches: 174, Indels: 59
0.86 0.11 0.04
Matches are distributed among these distances:
473 4 0.00
474 132 0.10
475 659 0.48
476 178 0.13
477 86 0.06
478 4 0.00
480 192 0.14
481 117 0.08
482 6 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (474 bp):
TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGATTAGTATGACTATTCATGTTT
GTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAAGGTGGAAAGAAAACCTTTTCTTGCGAC
ACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGAGTTCTTGGTTCCCAATCTTAAAAAG
AATGGAAACTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTAAGGAAAA
TAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAA
TGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCA
TCAATTTCGTCAATCCTAA
Found at i:3323001 original size:55 final size:55
Alignment explanation
Indices: 3322917--3323025 Score: 218
Period size: 55 Copynumber: 2.0 Consensus size: 55
3322907 GTGTTTTGAA
3322917 AGATTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAATTGCTCGAG
1 AGATTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAATTGCTCGAG
3322972 AGATTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAATTGCTCGA
1 AGATTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAATTGCTCGA
3323026 CATAAGAGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.48, C:0.07, G:0.21, T:0.24
Consensus pattern (55 bp):
AGATTTGGTGCAAAATAATTCAAAAGATAAAAAGATTAAGGAAGAATTGCTCGAG
Found at i:3323757 original size:13 final size:13
Alignment explanation
Indices: 3323727--3323766 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
3323717 ACAATTGTGC
*
3323727 ATGTATCGATTCA
1 ATGTATCGATACA
* *
3323740 TTGTATTGATACA
1 ATGTATCGATACA
3323753 ATGTATCGATACA
1 ATGTATCGATACA
3323766 A
1 A
3323767 AGCATAATGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3323941 original size:21 final size:22
Alignment explanation
Indices: 3323894--3323945 Score: 63
Period size: 21 Copynumber: 2.4 Consensus size: 22
3323884 ATTTCCACTT
*
3323894 AAAAACATTTGATTTAAGGCTC
1 AAAAACATTTGATTTAAGACTC
3323916 AAAAACATTTG-TTTATA-ACTC
1 AAAAACATTTGATTTA-AGACTC
*
3323937 TAAAACATT
1 AAAAACATT
3323946 CATTGATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 15 0.56
22 12 0.44
ACGTcount: A:0.44, C:0.13, G:0.08, T:0.35
Consensus pattern (22 bp):
AAAAACATTTGATTTAAGACTC
Found at i:3330677 original size:12 final size:12
Alignment explanation
Indices: 3330662--3330686 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
3330652 TCCGAGTCAA
3330662 CATCTTCATCAT
1 CATCTTCATCAT
3330674 CATCTTCATCAT
1 CATCTTCATCAT
3330686 C
1 C
3330687 TTTGATGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (12 bp):
CATCTTCATCAT
Found at i:3332384 original size:19 final size:20
Alignment explanation
Indices: 3332340--3332393 Score: 74
Period size: 19 Copynumber: 2.8 Consensus size: 20
3332330 CTGCCAGTTT
* **
3332340 CATGTATTGATACAATTGTG
1 CATGTATCGATACAATTGAA
3332360 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
3332379 CATGTATCGATACAA
1 CATGTATCGATACAA
3332394 AGCATTATGT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
19 17 0.55
20 14 0.45
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:3334022 original size:475 final size:473
Alignment explanation
Indices: 3332704--3334190 Score: 1883
Period size: 475 Copynumber: 3.1 Consensus size: 473
3332694 TCCTAACATA
* * * ** *
3332704 TACAAAAATTAGTGGGAAGAAAGTCTTTCTTGTGAAACTGAAGCATC-GATATCATCTATCCGAA
1 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAG-TATCATCTATCCTAA
* * *
3332768 TGAGAAGGCTATGTTTATGGTGCCTAATGTTGAAAAGAATGGGGATTAGTATGACCATTCA-TTT
65 TGAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACCATTCAGGTT
* * ** * * * *
3332832 TTGTCTTATTTAAGAGATAAATTTTGATTCTATCAATTACGGTGGAAAGAAAAGCTTTACCTGTG
130 TT-TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAAAGCTTTACTTGCG
* * * *
3332897 ACCCTAGAGCATCAATGTCATGTATCCTAATAAAAAGAATGTGTTTTTGGTTCCTAATCTTGAAA
194 ACCCCAAAGCATCAATGTCATGTATCCTAAT-GAAAGAATGTGTTTTTGGTTCCCAATCTTGAAA
* * * *
3332962 A-AAATGGAGACTGTTACAAGAATCTATGCTTATCTTATTAATGGGATGAACTTTGATTTTAAGG
258 AGAAA-AGAGACTGTTACAGGAATCTATGCTTGTCTTATTAA-AGGATGAACTTTGATTTTAAGG
* * * * * *
3333026 AAAATAAGGCAAAAAAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATTCGAATGAG
321 AAAATAAGGC-AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAG
* *
3333091 GAGAATGCGTTTATAGTTCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTATATC
385 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTATATC
*
3333156 TCATTTAAGGCATGCACTTAGGCTT
450 TCATTT-AGGCATGAACTTAGGCTT
* *
3333181 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATTTATCCCT-A
1 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTAT-CCTAA
* * * * * **
3333245 TGAGAAGACTAAGTATACGGTGCCTAATCCTTAAAAGAATGGGGATTAGTATGAGGATTCAGGTT
65 TGAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACCATTCAGGTT
* * * * * *
3333310 TGTCTTCTTTAAGAGACAAACTTTGATTTTATCAAAACCAGTTGAAAGAAAAGCTTTCCTTACGA
130 TTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAAAGCTTTACTTGCGA
* *
3333375 CCCCAAAG-ATCATTGTCATGTATCCTAATGAAAGGAATATGTTTTTGGTTCCCAATCTTGAAAA
195 CCCCAAAGCATCAATGTCATGTATCCTAATGAAA-GAATGTGTTTTTGGTTCCCAATCTTG-AAA
* * ** *
3333439 AGAATAGAGACTGTTAC-GAGAACCTATGCTTGTCTTATTTATCGGATGAAGTTTGATTTTAAGG
258 AGAAAAGAGACTGTTACAG-GAATCTATGCTTGTCTTA-TTAAAGGATGAACTTTGATTTTAAGG
* *
3333503 AAAATAAGGCAAAGAAAAGGTTTCCATGCAACAA-AAAATCATCAGTATCATTTATCCTAAAAAG
321 AAAATAAGGCAAAGAAAAGATTTCCATGCAA-AAGAAAATCATCAGTATCATTTATCCTAAAGAG
* * * * *
3333567 GAGAATATGTGTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTATAATCCAAGTATATC
385 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTATATC
*
3333632 TCATTTGAGGCACGAACTTAGGCTT
450 TCATTT-AGGCATGAACTTAGGCTT
* * *
3333657 TACAAAAATTGGTGGGAAAAAAGCCTTTTTTGCGAAACCAAAGCAT-AGTATCGTCTATCCTAAT
1 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTATCCTAAT
*
3333721 GAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTCAGGTTT
66 GAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACCATTCAGGTTT
* ** * * *
3333786 TTCTTATTTAAGAGACAAACTTTGATTCTACCAAAAATTGTTTAAAGAAAACCTTTTCTTGCGAC
131 TTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAAAGCTTTACTTGCGAC
* * * *
3333851 CCCAAAGCATGAATGTCATGTATCCTAACGAAGAGAATGTGTTTTCGGTTCCCAATCTAGAAAAG
196 CCCAAAGCATCAATGTCATGTATCCTAATGAA-AGAATGTGTTTTTGGTTCCCAATCTTGAAAAG
* * * * * *
3333916 AAAAGAGATTGTTACAGGAATCAATACATGCCTTATTCAAAGGATGAACTTTGATTTTAAGCAAA
260 AAAAGAGACTGTTACAGGAATCTATGCTTGTCTTATT-AAAGGATGAACTTTGATTTTAAGGAAA
* * * * *
3333981 ATAGGGCAAAGAAAAGATTTCCATGTAATAGAAAATCATCAGTATTATTTATCCTAAGGAGGAGA
324 ATAAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGA
* * * * * *
3334046 ATGTGTTTATAGCGCCTAATCATAAAATGAACGAAGATCATTACTAGAATCCATGTTTGTCTCAT
389 ATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTATATCTCAT
* *
3334111 TTAAGCTATGAACTTAGACTT
454 TTAGGC-ATGAACTTAGGCTT
*
3334132 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAGTATCATCTAT
1 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTAT
3334191 GTGAAAACAA
Statistics
Matches: 865, Mismatches: 128, Indels: 35
0.84 0.12 0.03
Matches are distributed among these distances:
474 9 0.01
475 355 0.41
476 267 0.31
477 224 0.26
478 10 0.01
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (473 bp):
TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCATCTATCCTAAT
GAGAAGACTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACCATTCAGGTTT
TTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTTGAAAGAAAAGCTTTACTTGCGAC
CCCAAAGCATCAATGTCATGTATCCTAATGAAAGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA
AAAGAGACTGTTACAGGAATCTATGCTTGTCTTATTAAAGGATGAACTTTGATTTTAAGGAAAAT
AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAAT
GTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCAAGTATATCTCATTT
AGGCATGAACTTAGGCTT
Found at i:3335238 original size:476 final size:476
Alignment explanation
Indices: 3334192--3342279 Score: 8892
Period size: 476 Copynumber: 17.1 Consensus size: 476
3334182 ATCATCTATG
* * * * *
3334192 TGAAAACAATAGGGATTAGTATGACTATTTATGTTTGTCTTTTTTAAGAGGCAAACTTTAATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
3334257 ATCAAAAACAGTAGAAAGAAAAGCTTTTTTTGCGACACCAAAGCATCAATGTCATATGTCCTAAT
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
3334322 AAAGGGAATGTGTT-TCTGGTTCCCAATCTTGAAAAGAATGGAAACTATTATGAGAATCGATGCT
131 GAAGGGAATGTGTTCT-TGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* *
3334386 TGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAATATTTCCATGCAA
195 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* *** * *
3334451 TAGAAAATCATCGGGATCATTTATCCTAATGAGGG-GAATGTATTTATATTGCCTAATCACAAAA
260 AAGAAAATCATCAATATCATTTATCCTAAT-AGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * *
3334515 TGAATGAAA-ATCATTACTAGAAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGAGTTTACA
324 TGAAT-AAAGATCATTACTAG-AATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
** * * *
3334579 AAAATTGGTAAGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC--GTCAATCCTAATGA
387 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGT--TTCCTTATGA
* *
3334642 GAAGA-TGATGTTTACGGTGCCTATTCCA
450 GAAGACT-ATGTTTATGGTGCCTAAT-CA
* * * * * *
3334670 -GAAAAGACTAAGAATTAGTCTGAGC-ATTAATGTTTGTCTTATTTAAGAGACAAGCTTTGATTC
1 TGAAAAGAATAGGGATTAGTATGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* ** * * * *
3334733 TATGAAAAACCATTGAAAGAAAAGCTTTTCTTACGACCCCAAAGCATCAATTTCATGTATCCTAA
65 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * * * * *
3334798 TGAAGGAAATGTGTTTTTGGTTTCCAATCTTGAAAAAAATGGAGACTATTACAAGAATTGATGCT
130 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * *
3334863 TGTCTTATTTATGGGATGAACTTTGATTTTAA-GAAATGTAGGGCAAAGAAAAGATTTCCATGCA
195 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAA-ATAGGGTAAAGAAAAGATTTCCATGCA
* ** * * * *
3334927 AAAAAAAATCATCTGTGTCATTTATCCTAATAGGGAGAACGTGTTTATAGTGCCTGATCACGAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * **
3334992 TGAATGAAA-ATCATTACTAGAATCTAGGTTTGTCTCATTTGAGGCACGAACTTAGACAATACAA
324 TGAAT-AAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * ** * **
3335056 AAATTGGTAGGAAGAAAGCCTTTCTTACGAAACCAAAGCATCAATATCATCTATCCGAATGAGAA
388 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAA
3335121 GACTATGTTTATGGTGCCTAATGC-
453 GACTATGTTTATGGTGCCTAAT-CA
** * *
3335145 TGAAAAGAATAGGGATTAGTATGACCGTTCATGTTTGTATTATTTACGAGACAAACTTTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
3335210 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACCCCAAAGCATCAAT-ACGATGTATCCTAA
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC-ATGTATCCTAA
* * * * *
3335274 TGAAAGGAATGTGTTTTTGATTCCCAATCCTGAAAAGAATGGAGACTGTTA-GAGAATCTATGCT
130 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* *
3335338 TGTCTTA-TTAACGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCTTGCA
195 TGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA
* * * * * *
3335402 AAAGAAAATCATCAATATCATTCATCCTAATAAGAAGAATGTATTTATAGTGCTTAATCTCAAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * ** * * * * *
3335467 TGAATGAATATCCGTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTAATAAA
324 TGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * * ** * *
3335532 AATTGGTGGGTAGAAGGCCTTTCTTGAGAAACCAAAGCACCAATATCATCTATCCTAATGAGAAG
389 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAAG
* *
3335597 ACTATGTTTATGGTACCTAATCC
454 ACTATGTTTATGGTGCCTAATCA
* * * *
3335620 TGAAAAGAATGGGGATTAGTATAACTATTCTTGTTTGTCTTATTTTAG-GACAAACTTTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * *
3335684 ATAAAAAAAGGTGAAAAGAAAAGCTTTTCTTGTG--A-C-AA-CA-C-A-G-C----ATCATAAT
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * *
3335736 GAAGTGAATGTGTTCTTAGTTCCCAATTTTGAAAAGAATGGAAACTGTTAAGAGAATCGATTCTT
131 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * * *
3335801 GTCATATTTAAGGGATGAATTTTGATTTAAAGG-AAA-A--G---A-AAAA-ATTTCCATGTAAA
196 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * * * *
3335857 AGAAAATTATCAACATC-TTTCATCCTAATAAGGG-GAACGTGTTTATAGTACCTAATTACAAAA
261 AGAAAATCATCAATATCATTT-ATCCTAAT-AGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* ** * *
3335920 TGGAA-AAAGATCATTACTAGAATCAATGCTTGTCTCATTTGACACATGAACTTACACTTTACAA
324 T-GAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
*** * * * * *
3335984 AAATTGGCAAGAAGAAAGCTTTTCTTACAAAACCAAAGCATCAACATCAGGTTTACTTATGAGAA
388 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAA
* * *
3336049 GACTATGTTTGTGCTGCCTAATCG
453 GACTATGTTTATGGTGCCTAATCA
* *** * * * *
3336073 TGAAAGGAATCCAGATTAGTAGGACTAATCATTTTTGTCTTATTTAAGAGACAAACATTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* *
3336138 ATCAAAAACAGTGGACAGAAAAGAC-TTTCTTGC-AGCACCAAAGCATCAATGTCATGTATCCTA
66 ATCAAAAACGGTGGAAAGAAAAG-CTTTTCTTGCGA-CACCAAAGCATCAATGTCATGTATCCTA
** * * ** * **
3336201 ATGAAGGGAATGCATTCTTAGTTCCCAATCTTGAAAAGAATAGAGACTACTACGAGTATCGATTA
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * * * * * *
3336266 TTATCATATTT-ATGGCTGAATTTTGATTTTAAGGAAAATAAGGTAAA-AAAAAATTTCTACGCA
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA
* * * *
3336329 AAAGAAAATCATCAATATCATTTATCCTAATAAGGAGATTGCGTTTATAGTACCTAATCACAAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
*** * *
3336394 TGAATAAAGATCATTACTAGAATCCACATTTGTCTTATTTGACGCACGAACTTAGACTTTACAAA
324 TGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * *
3336459 AATTGGTAGGAAG-AAGCCTTTCTTGTGAAACCAAAGCATCAATAAC-GTGTGTCCTTATGAGAA
389 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAG-GTTTCCTTATGAGAA
** *
3336522 GACTATGTTTATGGTGCAAAATCC
453 GACTATGTTTATGGTGCCTAATCA
* * * * *
3336546 T-AAAGAAAATGGGGAGTAGTATGACTATTCATGTTTGTCTAATTTAAGAGAC--ACTTTCATTC
1 TGAAA-AGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * ** *
3336608 TATAAAAAACGGTGGAAAGAAAA-CTTTTTGTTGTAACACCAAAGCATCAATGTCATGTATCTTA
65 TATCAAAAACGGTGGAAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* *
3336672 ATGAAGGGAATGTTTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCAATGC
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * *
3336737 TCGCCTTGTTTAAGGGATGAACTTTGATTTTAAGG-AAATAGGGTAAAGAAAAGATTTTCC-TAC
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGA-TTTCCATGC
3336800 AAAA-ATAAATCATCAATATCATTTATCCTAAT-GAGGAGAATGTGTTTATAGTGCCTAATCACA
258 AAAAGA-AAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACA
* * * * * * * *
3336863 AAATGAACAAAGGTCATTATTAGAATCCATGCTCGTTTCATTTGATGAACGAACTTAGACTTTGC
321 AAATGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * *
3336928 AAAAATTGGTTGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGGGTTTCCCTATGAG
386 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAG
*
3336993 AAGACTGTGTTTATGGTGCCTAATCA
451 AAGACTATGTTTATGGTGCCTAATCA
* * *
3337019 TGAAAAGAAT-GCAGATTAGTATGACTATTCATGTTTGCCTTATTCAAGAGACAAA-TATTGATT
1 TGAAAAGAATAG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATT
* * * *
3337082 ATATAAAAAATGGTGGACAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
64 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * *
3337147 ATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAATAGAATGGAGACTGTTATGAGAATCGATTC
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* ** * * * * * *
3337212 ATGTAATATTTAAGGGCTAAATTTTGATTTTAAGGAAAATAGGGTAAATAATAGATTTCAATGC-
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA
* * * * * *
3337276 AAA-AAAATCATCAATATAATTTATCCTAATAAGGAGATTGCGTTTATAGTACTTAATCACAAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * *
3337340 TGAATGAAGATCATTATTAGAATCCATG-TCTGTCTTATTTGAGGCATGAACATAGAC-TTACAA
324 TGAATAAAGATCATTACTAGAATCCATGCT-TGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * * *
3337403 AAATTGGTGGGAAGAATGACTTTCTTGTGAAACCAAAGCGTCAATATCATGTATCCTTATGGGAA
388 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAA
* *
3337468 GACTATGTTTATGGTGCATAATCT
453 GACTATGTTTATGGTGCCTAATCA
* * * *
3337492 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTAATTTTACAGACAAACTTTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
3337557 A-CAAAAACGGTGGAAAGAAAACCTTTACTTGCGACACCAAAGCATCATTGTCATGTATCCTAAT
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
** * *
3337621 GAA-GGAATGTGTTCTTGGTTCCTGATCTTGAAAAGAATGGAGACTGTTACAAGAATCAATGCTT
131 GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
* * *
3337685 GCCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGTGTAAAGAAAAGATTTCCATGCAAA
196 GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
* * *
3337750 AGAAAATCATAAATATCATTTATCCTAAT-GAGGACAATGTGTTTATAGTGCCTAGTCACAAAAT
261 AGAAAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* * * * *
3337814 GGATAAAGATCAGTACTAGAATCCATGCTTGTCTCATTTGACGCACGAATTTAGACTTTGCAAAA
325 GAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * * *
3337879 ATTGATGGGAAGAAAGCTTTTCTTGC-AAAGCCAAAGCATCAATATCGGGTTTTCTTATGAGAAG
390 ATTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAATATCAGGTTTCCTTATGAGAAG
* *
3337943 ATTATGTTTATGGTACCTAATCA
454 ACTATGTTTATGGTGCCTAATCA
* * * *
3337966 TGAAAAGAAT-GCGGATTAGTATGGCTATTCATGTTTGCCTTATTTCAGAGA-TAACTATTGATT
1 TGAAAAGAATAG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT-TTGATT
* * * *
3338029 ATATCAAAAACGGTGGACAGAAAAGCTTTTCTTACGACACCAAAGCATCATTGTCATGTATCCTA
64 CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* * * * * *
3338094 ATGAAGGGAATGTGTTCTTAGTTCCTAATCTTGAATAGAATAGATACTGTTACGAGAATCGATTC
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* ** * * * *
3338159 ATGTAATATTTAAGGGTTGAATTTTGATTTTAAGGAAAATAGGGTAAA-AGAAAGATTTTCAAGC
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGA-AAAGATTTCCATGC
* * * * *
3338223 AAAAAAAAATCATCAGTATCATTTATCCTAATAAGGAGAATGCGTTTATAGTACCTAATCACAAA
258 AAAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
3338288 ATGAATAAACATAATTACTAGAATCCAT-CTTTCTCTCATTTGAGGCACGCACATAGACTTTACA
323 ATGAATAAAGATCATTACTAGAATCCATGC-TTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *** ** * *
3338352 AAAATTGGTGAGAAGAACGGCTTTCTTGTGAAACAAAAATGTCAATATCCTGTATCCGTAT-AGG
387 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGA-G
* ** *
3338416 AAGACTATATTTATGGTTTAC-AATCC
451 AAGACTATGTTTATGG-TGCCTAATCA
* * *
3338442 TAAAAAGAAT-GTGATTAGTATGACTATTC-TAGTTTGTCTAATTTAAGAGACAAACTTTGATTC
1 TGAAAAGAATAGGGATTAGTATGACTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
3338505 TA-CAAAAAAGGGTGGAAAGAAAACCTTTTCTTGTGACACTAAAGTATCATTGTCATGTATCCTA
65 TATC-AAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTA
* *
3338569 ATGAA-GGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACAAGAATCAATGC
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * * *
3338633 TTGCCTTGTTTACGGGATGAACTTTGATTTTAAGGAAAATAGTGCAAAGAAAATATTTCCATGCA
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA
* * *
3338698 AAAGAAAATCATCAATGTCATTTATCCTAGT-GAGGAGAATGCGTTTATAGTGCCTAATCACAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
3338762 ATGGAA-AAAGATCATTACTAGAATCCATGCTTATCTCATTTGATGCACAAACTTAGTCTTTGCA
323 AT-GAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * * * *
3338826 AAAATTGGTGGGTAGAAAGCTTTTCTTGCAAAACCAAAGCGTCAATATCGGGTTTTCTTATGAGA
387 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGA
*
3338891 AGATTATGTTTATGGTGCCTAATCA
452 AGACTATGTTTATGGTGCCTAATCA
* * * *
3338916 TGAAAAGAAAATGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACATTCATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * * * *
3338981 ATCAAAAATGGTGGATAGAAAAGGTTTTCTTGCGACACCAAAGCATCAACGTCTTGTATCCAAAT
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * * *
3339046 AAAGGAAATGTGCTT-TTGGTTTCGAATCTAGAAAAGAATAGAGACTATTACGAGAATAGATGCT
131 GAAGGGAATGTG-TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * * * * * * * * *
3339110 AGTCTTATTTATGAGATGAACGTTGATTTCAAGGAAAAAAAGGTGAAGACAGGATTTTCAAGCAA
195 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * * * *
3339175 AAAAAAACCATCAATATCATTCATCCTAGT-GAGGAGAATGTGTTTATAGTGCCCAATCAAAAAA
260 AAGAAAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * * **
3339239 TGGATAAAGATCATAACTAGAATCCAAGCTTGTCTTATTTGACGCATAAACTTAGACTTTACAAA
324 TGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * ** * * * *
3339304 AATTTGTGAGAAGAAAGCATTTCCAGTGAAACCAAAGCGTCAATATTAGGTTTACTTATGAGAAG
389 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAAG
3339369 ACTATGTTTGA-GGTGCCTAATCA
454 ACTATGTTT-ATGGTGCCTAATCA
* ** * * * * * *
3339392 AGAAAAGAATCCGGATTAGTAGGACTACTCATATATGTCTTATTTAAAAGACAAACGTTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * ** * **
3339457 ATCAAAAACAGTAGATTGAAAAGCTTTTCTTGTGACACCAAAGCATCAACATCATGTATCCTAA-
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * *
3339521 GTAA-CGAACTGTTTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATTC
131 G-AAGGGAA-TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * * *
3339585 TTGTCATATTTAAGGGCTGAATTTTGATTTTAAGAAAAATAGGGTAAAGAAAAGATTTTCAAGCA
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCA
* * ** * *
3339650 AAAGAAAATCATCAGTATCATTTATCCTAAAAAAGAGAATGTGTTTCTAGTGCTTAATCACAAAA
259 AAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * *
3339715 TGAATAAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCACGAACTTAGATTTTACAAA
324 TGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * ** * * *
3339780 AATTGGTGAGAAGAAAGCTTTTCTTATGAAACCAAAGCGTCAATATCA--TTATCTTTATGGGAA
389 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTT-TCCTTATGAGAA
* * * *
3339843 GACTACGTTTATGGAGCGTAATCC
453 GACTATGTTTATGGTGCCTAATCA
* *
3339867 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT-TTAATTTAAGAGACAAACTTTGATTC
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTT-ATTTAAGAGACAAACTTTGATTC
* * * *
3339931 TATAAAAAACGATGGAAAAAAAACCTTTTCTTGCGACACCCAAA-CATCAATGTCATGTATCCTA
65 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CCAAAGCATCAATGTCATGTATCCTA
* * *
3339995 ATGAAGGGAATGCGTTCTTGGTTCCTAATCTTGAAACA-AATGGAGACTGTTACGAGAATCGATA
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAA-AGAATGGAGACTGTTACGAGAATCGATG
* * * * *
3340059 CTTGCCTTATTTAAGGGATGGACTTTGATTTTAAGGAAAATAGGGTCAAGAATAGATTTCCATTC
193 CTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGC
* * * ***
3340124 AAAAGAAAATCATCAATGTCATTTATCCTAATTA-GTAGACTACATTTATAGTGCCTAATCACAA
258 AAAAGAAAATCATCAATATCATTTATCCTAA-TAGGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * *
3340188 AATGGATAAAGATCATTACTAAAATCCATGCTTATCTCATTTGATGCACGAACTTTAGACTTTGC
322 AATGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAAC-TTAGACTTTAC
* * * * * *
3340253 AAAAATTGGTGGGTAGAAAGCTTTTCTTGCAAAACCAAAGCGTCAATATCGGGTTTTCTTATGAG
386 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAG
*
3340318 AAGATTATGTTTATGGTGCCTAATCA
451 AAGACTATGTTTATGGTGCCTAATCA
* * * * *
3340344 TGAAAAGAAAATGGATTAGTATGACAATTCATGTTTGTCTTATTTAAGAGACAAACATTCATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * ** *
3340409 ATCAAAAACGGTGGATAGAAAAGGTTTTCTTGCGACACCAAAGCATCAGCGTCTTGTATCCTAAT
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * * * * * *
3340474 GAAGGAAATGTGCTT-TTGGTTTCGAATCTAGAAAAGAATAGAGACTATTACGAGAATAGATG-T
131 GAAGGGAATGTG-TTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * * * * ** * *
3340537 AGTCTTATTTATGAGATGAACATTGATTTCAAGGAAAAAAGGGTAAAGAAGTGATTTTCAAGCAA
195 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGC--
* * * * * *
3340602 AAAAAAAAAACCATCAATAGCATTCATCCTAGT-GAGGAGAATGTGTTTATAGTGCCTAATCATA
258 -AAAAGAAAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACA
* * * ** * ** *
3340666 AAATGGATAAAGATCATAACTAGAATCCAAGCTTGTCTTGTTTGACGCATAAACTTAGACATTAC
321 AAATGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * ** * *
3340731 AAAAATTTGTGAGAAGAAAGCCTTTCCTGTGAAACCAAAGTGTCAATATTAGGTTTACTTATGAG
386 AAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAG
*
3340796 AAGAC--TGTTTGA-AGTGCCTAATCA
451 AAGACTATGTTT-ATGGTGCCTAATCA
* ** * * *
3340820 AGAAAAGAATCTGGATTAGTAGGACTATTCATATTTGTCTTATTTAAGAGACAAACGTTGATTCT
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
** **
3340885 ATCAAAAACGGTGGATTGAAAAGCTTTTCTTGCGACACCAAAGCATCAACATCATGTATCCTAA-
66 ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
* * *
3340949 GTAA-AGAACTGTGTTCTTAGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATTC
131 G-AAGGGAA-TGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * *
3341013 TTGTCATATTTAAGGGCTGAATTTTGATTTT-AGGAAAAATAGGGTAAAGAAAAGATTTCCACGC
194 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG-AAAATAGGGTAAAGAAAAGATTTCCATGC
* ** * * * *
3341077 AAAAGAAAATCATCAATATCATTTATCCTAAAAAAGAGAATGTGTTTCTAGTGCTTAATCATAGA
258 AAAAGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
3341142 ATGAATAAAGATCATTACTAGATTCCATGTTTGTCTCATTTGAGGCATGAACTTAGATTTTACAA
323 ATGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* ** * ** * * *
3341207 AAATTGGTGAGAAGAAAGCCTTTCTTATGAAACCAATGCATCAATATCATATATCTTTATGGGAA
388 AAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAA
* * ** *
3341272 GACTACGTTTATGGAGTGTAATCC
453 GACTATGTTTATGGTGCCTAATCA
* * *
3341296 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTCGT-TTAATTTAAGAGACAAACTTTGATTC
1 TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTT-ATTTAAGAGACAAACTTTGATTC
* * * *
3341360 TATAAAAAACGATGGAAAAAAAACCTTTTCTTGCGACACCCAAA-CATCAATGTCATGTATCCTA
65 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CCAAAGCATCAATGTCATGTATCCTA
* *
3341424 ATGAAGGGAATGCGTTCTTGGTTCCCAATCTTGAAACGAATGGAGACTGTTACGAGAATCGATGC
129 ATGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC
* * * * * * *
3341489 TTGCCTTATTT-AGGAGATGGACTTTGATTTTATGGAAAATATGGTCAAGAATAGATTTCCATTC
194 TTGTCTTATTTAAGG-GATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGC
** * *
3341553 AAAAGAAAATCATCAATATCATTTATCCTAAT-GATTAGACTGCGTTTATAGTGCCTAATCACAA
258 AAAAGAAAATCATCAATATCATTTATCCTAATAG-GGAGAATGTGTTTATAGTGCCTAATCACAA
* * * *
3341617 AATGGATAAAGATCATTACTAGAATCCATGCTTGTCTGATTTGATGCACGAACTTAGACTTTGCA
322 AATGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * ** *
3341682 GAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTGGGTTTCCTTATGAGT
387 AAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGA
*
3341747 AGACTATGTTTATGGTGCCTAATCT
452 AGACTATGTTTATGGTGCCTAATCA
* * *
3341772 TGAAAAGAAT-GTAGATTAGTATGACTATTCATGTTTGTCATATTTAAGAGACAAACATTGATTC
1 TGAAAAGAATAG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* * **
3341836 TATCAAAAGCAGTGGACGGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
65 TATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
3341901 TGAAGGGAACGTGCTCTTAGTTCCCAATCTTG-AAAGAATGGAGACTGTTACGAGAATCGATTCT
130 TGAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * * **
3341965 TGTCATATTTAAGGGCTGAATTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCACACAA
195 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAA
* * * ** *
3342030 AAAATAAATCATCAATATCATTTATCCTAATAAGTAGAATGCATTTATAGTGCCTAATCACTAAA
260 AAGA-AAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
* * * * ** **
3342095 TGGATAAAGAACATTACTAGAATCCGTGCTTATCTCATTTGACACATAAACTTAGACTTTACAAA
324 TGAATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* * * *
3342160 ACTTGGTGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAATATCGGGTTTACTTATGAGAAG
389 AATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAAG
* *
3342225 ACTATGTTTGTGGTGCCTAACCA
454 ACTATGTTTATGGTGCCTAATCA
** *
3342248 TGAAAAGAATCTGGATTAGTAGGACTATTCAT
1 TGAAAAGAATAGGGATTAGTATGACTATTCAT
3342280 CAATATCATT
Statistics
Matches: 6365, Mismatches: 1094, Indels: 304
0.82 0.14 0.04
Matches are distributed among these distances:
452 2 0.00
453 211 0.03
454 49 0.01
455 2 0.00
456 1 0.00
457 1 0.00
458 3 0.00
459 2 0.00
460 2 0.00
461 53 0.01
462 38 0.01
463 5 0.00
466 21 0.00
467 73 0.01
468 2 0.00
469 3 0.00
470 3 0.00
471 238 0.04
472 219 0.03
473 458 0.07
474 856 0.13
475 1146 0.18
476 2270 0.36
477 537 0.08
478 77 0.01
479 93 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
TGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT
GAAGGGAATGTGTTCTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTT
GTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAA
AGAAAATCATCAATATCATTTATCCTAATAGGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
AATAAAGATCATTACTAGAATCCATGCTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAA
TTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCAGGTTTCCTTATGAGAAGAC
TATGTTTATGGTGCCTAATCA
Found at i:3335691 original size:158 final size:157
Alignment explanation
Indices: 3334540--3335715 Score: 490
Period size: 158 Copynumber: 7.4 Consensus size: 157
3334530 ACTAGAAATC
* * * * * *
3334540 CATGTTTGTCTCATTTAAGGCACGAACTTAGAGTTTA-CAAAAATTGGT-AAGAAG-AAAGCCTT
1 CATGTTTGTCTTATTTACGG-ACAAACTTTGA-TTTATAAAAAATTGGTGGA-AAGAAAAGCCTT
* * *
3334602 TCTTGCA-AAACCAAAGCATCAATATCGTCAATCCTAATGAGAAG-ATGATGTTTACGGTGCCTA
63 TCTTG-AGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGAAT-ATGTTTATGGTGCCTA
* * * * * *
3334665 TTCCAGAAAAGACT-AAGAATTAGTCTGAGCATT
126 ATCCTGAAAAGAATGGAG-ATTAGTAT-AGAATT
* * * * *** * *
3334698 AATGTTTGTCTTATTTAAGAGACAAGCTTTGATTCTATGAAAAA-CCATTGAAAGAAAAGCTTTT
1 CATGTTTGTCTTATTTACG-GACAAACTTTGATT-TATAAAAAATTGGTGGAAAGAAAAGCCTTT
** * * * * * *
3334762 CTT-ACGACCCCAAAGCATCAATTTCATGTATCCTAATGA-AGGAAATGTGTTTTTGGTTTCC-A
64 CTTGA-GAAACCAAAGCATCAATATCATCTATCCTAATGAGAAG-AATATGTTTATGG-TGCCTA
* * * * *
3334824 ATCTTGAAAAAAATGGAGACTATTACAAGAATT
126 ATCCTGAAAAGAATGGAGATTAGTA-TAGAATT
* * * ** * * *
3334857 GATGCTTGTCTTATTTATGGGATGAACTTTGATTT-TAAGAAATGTAGG-GCAAAGAAAAG-ATT
1 CATGTTTGTCTTATTTA-CGGACAAACTTTGATTTATAAAAAAT-T-GGTGGAAAGAAAAGCCTT
* ** * ** * * * ** *
3334919 TCCATGCA-AAAAAAAATCATCTGTGTCATTTATCCTAAT-AGGGAGAACGTGTTTATAGTGCCT
63 T-CTTG-AGAAACCAAAGCATCAATATCATCTATCCTAATGA-GAAGAATATGTTTATGGTGCCT
* * * * * *
3334982 GATCAC-GAAATGAATGAAAATCATTACTAGAA-T
125 AATC-CTGAAAAGAATGGAGATTAGTA-TAGAATT
* * * * **
3335015 CTAGGTTTGTCTCATTTGA-GGCACGAACTTAGA-CAATACAAAAATTGGTAGG-AAG-AAAGCC
1 C-ATGTTTGTCTTATTT-ACGG-ACAAACTTTGATTTATA-AAAAATTGGT-GGAAAGAAAAGCC
* *
3335076 TTTCTT-ACGAAACCAAAGCATCAATATCATCTATCCGAATGAGAAGACTATGTTTATGGTGCCT
61 TTTCTTGA-GAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCT
* *
3335140 AATGCTGAAAAGAATAGG-GATTAGTAT-GACCGTT
125 AATCCTGAAAAGAAT-GGAGATTAGTATAGA--ATT
* * * *
3335174 CATGTTTGTATTATTTACGAGACAAACTTTGATTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTTATTTACG-GACAAACTTTGATT-TATAAAAAATTGGTGGAAAGAAAAGCCTTT
* ** * * * * * *
3335238 CTTGCGACCCCAAAGCATCAATA-CGATGTATCCTAATGA-AAGGAATGTGTTTTTGATTCCCAA
64 CTTGAGAAACCAAAGCATCAATATC-ATCTATCCTAATGAGAA-GAATATGTTTATGGTGCCTAA
* *
3335301 TCCTGAAAAGAATGGAGACT-GT-TAGAGAAT
127 TCCTGAAAAGAATGGAGATTAGTATAGA-ATT
* * ** * * *
3335331 CTATGCTTGTCTTATTAACGGGATGAACTTTGATTT-TAAGGAAAATAGG-GCAAAGAAAAG-AT
1 C-ATGTTTGTCTTATTTAC-GGACAAACTTTGATTTATAA--AAAATTGGTGGAAAGAAAAGCCT
** * * * * * *
3335393 TTCCTTGCA-AAAGAAAATCATCAATATCAT-TCATCCTAATAAGAAGAATGTATTTATAGTGCT
62 TT-CTTG-AGAAACCAAAGCATCAATATCATCT-ATCCTAATGAGAAGAATATGTTTATGGTGCC
* * * ** *
3335456 TAAT-CTCAAAATGAATGAATATCCGTACTAGAATC
124 TAATCCTGAAAA-GAATGGAGATTAGTA-TAGAATT
* ** * ** *
3335491 CATGTTTGTCTCATTTGA-GGCACAAACTTAAACTTA-ATAAAAATTGGTGGGTAG-AAGGCCTT
1 CATGTTTGTCTTATTT-ACGG-ACAAACTTTGATTTATA-AAAAATTGGTGGAAAGAAAAGCCTT
* * *
3335553 TCTTGAGAAACCAAAGCACCAATATCATCTATCCTAATGAGAAGACTATGTTTATGGTACCTAAT
63 TCTTGAGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAAT
*
3335618 CCTGAAAAGAATGGGGATTAGTATA-ACTATT
128 CCTGAAAAGAATGGAGATTAGTATAGA--ATT
* * * *
3335649 CTTGTTTGTCTTATTTTA-GGACAAACTTTGATTCTATAAAAAA-AGGTGAAAAGAAAAGCTTTT
1 CATGTTTGTCTTA-TTTACGGACAAACTTTGATT-TATAAAAAATTGGTGGAAAGAAAAGCCTTT
3335712 CTTG
64 CTTG
3335716 TGACAACACA
Statistics
Matches: 735, Mismatches: 204, Indels: 158
0.67 0.19 0.14
Matches are distributed among these distances:
156 6 0.01
157 46 0.06
158 338 0.46
159 318 0.43
160 22 0.03
161 5 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (157 bp):
CATGTTTGTCTTATTTACGGACAAACTTTGATTTATAAAAAATTGGTGGAAAGAAAAGCCTTTCT
TGAGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGAATATGTTTATGGTGCCTAATCCT
GAAAAGAATGGAGATTAGTATAGAATT
Found at i:3342421 original size:142 final size:142
Alignment explanation
Indices: 3342165--3342421 Score: 363
Period size: 142 Copynumber: 1.8 Consensus size: 142
3342155 ACAAAACTTG
* * * * * *
3342165 GTGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAATATCGGGTTTACTTATGAGAAGACTAT
1 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAGCAATATCAGCTATACTAATGAGAAGACTAT
* *
3342230 GTTTGTGGTGCCTAACCATGAAAAGAATCTGGATTAGTAGGACTATTCATCAATATCATTTATCC
66 GTTTATGGTGCCTAACCATGAAAAGAATCGGGATTAGTAGGACTATTCATCAATATCATTTATCC
3342295 TAATAAAAATTT
131 TAATAAAAATTT
* * * * *
3342307 GTGGGTAGAAAGCTTTTCTTGCGAAACCAAAGTAGCAATATCATCTATCCTAATGAGAAGACTAT
1 GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAGCAATATCAGCTATACTAATGAGAAGACTAT
* *
3342372 GTTTATGGTGCCTAATCC-TGAAAAGAATGGGGATTAGTATGACTATTCAT
66 GTTTATGGTGCCTAA-CCATGAAAAGAATCGGGATTAGTAGGACTATTCAT
3342422 GCTTGTCTTA
Statistics
Matches: 99, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
142 97 0.98
143 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (142 bp):
GTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAGCAATATCAGCTATACTAATGAGAAGACTAT
GTTTATGGTGCCTAACCATGAAAAGAATCGGGATTAGTAGGACTATTCATCAATATCATTTATCC
TAATAAAAATTT
Found at i:3342893 original size:617 final size:617
Alignment explanation
Indices: 3341683--3342896 Score: 1682
Period size: 618 Copynumber: 2.0 Consensus size: 617
3341673 GACTTTGCAG
* ** * * * *
3341683 AAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATTGGGTTTCCTTATGAGTA
1 AAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCAGCTATCCTAATGAGAA
* * *
3341748 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGTAGATTAGTATGACTATTCATGTTTGTCAT
66 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCATGCTTGTCAT
* **
3341813 ATTTAAGAGACAAACATTGATTCTATCAAAAGCAGTGGACGGAAAAGCTTTTCTTGCGACACCAA
131 ATTTAAGAGACAAACATTGATGCTATCAAAA-CAGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * *
3341878 AGCATCAATGTCATGTATCCTAATGAAGGGAACGTGCTCTTAGTTCCCAATCTTGAAAGAATGGA
195 AGCATCAATGTCATGCATCCTAATGAAGGGAACGTACTCTAAGTTCCCAATCTTGAAAGAATAGA
* * * * *
3341943 GACTGTTACGAGAATCGATTCTTGTCATATTTAAGGGCTGAATTTTGATTTTAAGGAAAATAGGG
260 AACTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAATAGGG
* *
3342008 TAAAGAAAAGATTTCCACACAAAAAATAAATCATCAATATCATTTATCCTAATAAGTAGAATGCA
325 TAAAGAAAAAATTTCCACACAAAAAATAAATCATCAATATCATTTATCCTAATAAGGAGAATGCA
* * * *
3342073 TTTATAGTGCCTAATCACTAAATGGATAAAGAACATTACTAGAATCCGTGCTTATCTCATTTGAC
390 TTTATAGTACCTAATCACAAAATGAATAAAGAACATTACTAGAATCCATGCTTATCTCATTTGAC
* * *
3342138 ACATAAACTTAGACTTTACAAAACTTGGTGGGAAGAAAGCCTTTCTTGCGAAACTAAAGCATCAA
455 ACACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* * *
3342203 TATCGGGTTTACTTATGAGAAGACTATGTTTGTGGTGCCTAACCATGAAAAGAATCTGGATTAGT
520 TATCGGGTTTACTTATGAGAAGACTATGTTTATGGTACCTAACCATGAAAAGAATCGGGATTAGT
3342268 AGGACTATTCATCAATATCATTTATCCTAATAA
585 AGGACTATTCATCAATATCATTTATCCTAATAA
* * * * * *
3342301 AAATTTGTGGGTAGAAAGCTTTTCTTGCGAAACCAAAGTAGCAATATCATCTATCCTAATGAGAA
1 AAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCAGCTATCCTAATGAGAA
* *
3342366 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGCTTGTCTT
66 GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCATGCTTGTCAT
* *
3342431 ATTTAAGAGACAAACTTTGATGCTATCCAAAA-AGTTGGAAAGAAAAGCTTTTCTTGTGACACCA
131 ATTTAAGAGACAAACATTGATGCTAT-CAAAACAG-TGGAAAGAAAAGCTTTTCTTGCGACACCA
** * * * *
3342495 AAGTGTTAATGTCATGCATCCTAGTGAAGGGAATGTATTCTAAGTTCCCAATCTTGAAAAGAATA
194 AAGCATCAATGTCATGCATCCTAATGAAGGGAACGTACTCTAAGTTCCCAATCTTG-AAAGAATA
*
3342560 GAAACTGTTATAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAATAG
258 GAAACTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAATAG
** * *
3342625 GGTAAAGAAAAAATTTCCATGC-AAAAA-AAATTATCAATATC-TTTCATCCTAATAAGGAGATT
323 GGTAAAGAAAAAATTTCCACACAAAAAATAAATCATCAATATCATTT-ATCCTAATAAGGAGAAT
* * * * * *
3342687 GCGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTCGAATCTATGTTTGTCTCATTT
387 GCATTTATAGTACCTAATCACAAAATGAATAAAGAACATTACTAGAATCCATGCTTATCTCATTT
** * * * *
3342752 GAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTTTTGTGAAACCAAAGCAT
452 GACACACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCAT
* ** * *
3342817 CAATATCGTGTGTT-CTTATGAGAAGACTATGTTTATGGTATGTAATCATGAAAAGAATGGGGAT
517 CAATATCGGGT-TTACTTATGAGAAGACTATGTTTATGGTACCTAACCATGAAAAGAATCGGGAT
*
3342881 TAGTATGACTATTCAT
581 TAGTAGGACTATTCAT
3342897 GTTTGTCTAA
Statistics
Matches: 518, Mismatches: 73, Indels: 11
0.86 0.12 0.02
Matches are distributed among these distances:
616 3 0.01
617 209 0.40
618 216 0.42
619 90 0.17
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (617 bp):
AAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCAGCAATATCAGCTATCCTAATGAGAA
GACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGAGATTAGTATGACTATTCATGCTTGTCAT
ATTTAAGAGACAAACATTGATGCTATCAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAA
GCATCAATGTCATGCATCCTAATGAAGGGAACGTACTCTAAGTTCCCAATCTTGAAAGAATAGAA
ACTGTTACAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAATAGGGT
AAAGAAAAAATTTCCACACAAAAAATAAATCATCAATATCATTTATCCTAATAAGGAGAATGCAT
TTATAGTACCTAATCACAAAATGAATAAAGAACATTACTAGAATCCATGCTTATCTCATTTGACA
CACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
ATCGGGTTTACTTATGAGAAGACTATGTTTATGGTACCTAACCATGAAAAGAATCGGGATTAGTA
GGACTATTCATCAATATCATTTATCCTAATAA
Found at i:3344145 original size:475 final size:474
Alignment explanation
Indices: 3342299--3345606 Score: 3622
Period size: 475 Copynumber: 7.0 Consensus size: 474
3342289 TTATCCTAAT
* * * *
3342299 AAAAATTTGTGGGTAGAAAGCTTTTCTTGCGAAACCAAAGTAG-CAATATCATCTATCCTAATGA
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAG-CGTCAATATCATCTATCCTAATGA
*
3342363 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGCTTGT
65 GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * **
3342428 CTTATTTAAGAGACAAACTTTGATGCTATCCAAAAA-GTTGGAAAGAAAAGCTTTTCTTGTGACA
130 CTTATTTAAGAGACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC-
** * * * * *
3342492 CCAAAGTGTTAATGTCATGCATCCTAGTGAAGGGAATGTATTCTAAGTTCCCAATCTTGAAAAGA
193 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGA
* *
3342557 ATAGAAACTGTTATAAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAA
258 ATGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAA
* * *
3342622 TAGGGTAAAGAAAAAATTTCCATGCAAAA-AAAATTATCAATATC-TTTCATCCTAATA-AGGAG
323 TAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAA-AGAGGAG
* * * * *
3342684 ATTGCGTTTATAGTACCTAATCACAAAATGAATAAAGATCATTACTCGAATCTATGTTTGTCTCA
386 AATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCA
3342749 TTTGAGGCACGAACTTAGACTTTAC
451 TTTGAGGCACGAACTTAGAC-TTAC
* * * * * * * * * *
3342774 AAAAATTGGTGGGAAGAAAGTCTTTTTTGTGAAACCAAAGCATCAATATCGTGTGTTCTTATGAG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
*** *
3342839 AAGACTATGTTTATGGTATGTAATCATGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
66 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * *
3342904 TAATTTAAGAGACAAACTTTGATTCTAT-AGAAAATGATAGAAAGAAAACCTTTTCTTACGACAC
131 TTATTTAAGAGACAAACTTTGATTCTATCA-AAAACGGTGGAAAGAAAAGCTTTTCTTACGAC-C
* * *
3342968 CAAAGCATCAATGTCATGTGTCCTAATGAAGGGAATGTGTTTTTAGTTCCCAATCTTGAAAAGAG
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
** ** * * * * * * * *
3343033 TGGAAACTGGAACAAGAATCGATGCTTATCTTATTTATGAGATGCACTTTAATTTTAAGGAAAAT
259 TGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAAT
* * * ** *
3343098 ATGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAGGATCATTTATCCTAAAGAGAAGAAT
324 AGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
* * * * *
3343163 GTGTTTATATTGTCTAATCACAAATTGAATAAAGATCATTACTAGAATCCATATTTGCCTCATTT
389 GTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTT
** *
3343228 GAGGCAAAAACTTAGACTATGC
454 GAGGCACGAACTTAGACT-TAC
* * * * * * * * * *
3343250 AAAAATTGGTGGGAAGAAAGCGTTTCTTGAGAAGCCAAAGCCTTAGTATCATGTATTCTTATGAG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
* * * *
3343315 AAGACTATGTTTATGGTGCCTAATCCTAAAAACAATGGGGATTAATATGAGTATTCATGTTTGTA
66 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT-
* * * * *
3343380 CTT-TTTAAGAG--AAACTTTGATTCTATAAAAAATGGTGGAAAG-AAAGCCTTTCTTATGACAT
130 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC-C
** * * * * * *
3343441 CAAAGCATTGATGTCATGCATCCTAAAGAAGGGAATGCGTTCTTGGTTCCCAGTCATGAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * * *
3343506 TGGAAA-TGGTTATGATAATCGAAGCTTGTCATATTTTAGGGTTGAATTTTGATTTAAAGGAAAC
259 TGGAAACT-GTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAA
* * * *
3343570 TAGGGCAAAG-AAATATTTCCATGCAAAAGAAAATTATCAATATCATTCATCCTAATGAGGGGAA
323 TAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAA
* * * * *
3343634 TGTGTCTATAGTGCCTAAACACAAAATGAATGAAGATCAATT-CTAGAATCTATGTTTATCTCAT
388 TGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATC-ATTACTAGAATCCATGTTTGTCTCAT
*
3343698 TTGAGGCATGAACTTAGACATTAC
452 TTGAGGCACGAACTTAGAC-TTAC
* ** * * * *
3343722 AAAAATTAGTGGGAAAAAAGTGTTTTTTGGGAAACCAAAGCGT-AATATCGTCAATCCTAATGAG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
* * * *
3343786 AAGACAATGTTATATGGTGCCTATTCCTGAAAAGAATGGGCATTAGTATGAGC-ATTAATGTTTG
66 AAGACTATGTT-TATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATTCATGTTTG
* * ** * *
3343850 TCTTATTTAAGAGACAAGCTTTGATTCTATGAAAAACAATTGAAAGAAAAGCTTTTCTTACAACC
129 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACC
* * * * * *
3343915 CTAAAGCATCAATTTCACT-TATCCTAATGAAAGAAATGTGTTTTTGGTTCCTAATCTTG-AAAG
194 C-AAAGCATCAATGTCA-TGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAG
* * * * *
3343978 AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTAA-GAAA
257 AATGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAA
* * * * * * *
3344042 TGTAGGGCAAAGAAAATATTTTCTTGCAACAGAAAATCATCAGTACCATTTATCCTAATGAGGAG
322 -ATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAG
* * *
3344107 AACGTGTTTATAGTGCCTAATCACAAAATGATTGAAGATCATTACTAGAATCCATGTTTGTCTCA
386 AATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCA
3344172 TTTGAGGCACGAACTTAGACTATAC
451 TTTGAGGCACGAACTTAGACT-TAC
* *
3344197 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATCTATCCGAATGAG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
* * * * * *
3344262 AAGACTATATTTACGGTCCCTAATGCTGTAAAGAATGGGGATTAGTATGACCATTCATGTTTGTC
66 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * ***
3344327 TTATTTAAGAGACAAACTTTGATTTTATCAATAACGGTGGAAAGAAAAGCTTTTCTCGTGACACC
131 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC-CC
** * * * * *
3344392 AAAGTGTTAGTGTCATGCAT-CTGAATGAAGAGAATGTGTTCTTAGTTCCCAATCTTGAAAAAAA
195 AAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTCTTAGTTCCCAATCTTG-AAAAGA
** * *
3344456 ATGGAAACTGTTACAAGAATCGATACTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAC
258 ATGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAA
* * * *
3344521 TAGGGCAAAGAAAAAATTTCCAAGCAAAAGAAAATTAACAATATC-TTTCATCC-AAAGAAGGAG
323 TAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTT-ATCCTAAAG-AGGAG
* * * *
3344584 AATGTGTTTATAGTGCCAAATCACAAAATGGATAAAGATCATTACTATAATCCATGCTTGTCTCA
386 AATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCA
* * *
3344649 TTTGACGCATGAACTTAGAATTTAC
451 TTTGAGGCACGAACTTAG-ACTTAC
* * * * ***
3344674 AAAAATTAGTGGGAAGAAAGCCTTTCCTACAAAATCAAAGCGTCAATAT--TGGGT--T-A--AG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
* * * ** * *
3344732 AAGACTATGTTTGA-AGTGCCTAATCATAAAAAGAATCTGGATTGGTAAGACTATTCATGTTTGT
66 AAGACTATGTTT-ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGT
* * * * * *
3344796 CTTATTTAAGAGAAAAACATTAATTCTATCAAAAACAGTGGACAGAAAAGCTTTTCTTGCGACAC
130 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGAC-C
* * * *
3344861 TAAAGCATCAATGTTATGTATCCTAATGAAAGGAATGTGTTCTTAGTTCCCAATCTTTAAAAGAA
194 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAA
* * * * *
3344926 TGGAGACTGTTATGAGAATCAATTCTTGTCATATTTAAGGGCTGAATTTTGATTTTAA-GAAAAT
259 TGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAAT
* * * * * * *
3344990 AAGGTAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCTTAAAAAGGAGAAA
324 AGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAAT
* ** * * * *
3345055 GTGTTTATAGTGCCTAATCACAAATTGAAGGAAGATAATTATTAGATTTCATGTTTGTCTCATTT
389 GTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTT
*
3345120 GAGGCACGAATTTAGACTTTAC
454 GAGGCACGAACTTAGAC-TTAC
* * * * * * * *
3345142 AAAAATTTGTAGGAAGAAAGCCTTTCTTGTGAAACCAAAGTGTCAATATCGTATATCCTTATGGG
1 AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
* ** * * * *
3345207 AAGACTATGTTTATGGAGTGTAGTCCTGAAAAGAATAGGGATTAGTATGACTATTCAAGCTTGTC
66 AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * *
3345272 TAATTTAAGAGATAAACTTTGATTCTATAAAAAACGATGGAAAGAAAACCTTTTTTTACGACACC
131 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACG--ACC
*
3345337 CAAA-CATCAAATGTCTTGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGA
194 CAAAGCATC-AATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGA
* * * * * * *
3345401 ATGGAGACTGTTATGAGAATCGATGCATGCCTTATTT-AGGAGATGAACTTTGATTTGAAGAAAA
258 ATGGAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGG-GATGAATTTTGATTTAAAGGAAA
* * * *
3345465 ATAGGGCAAAGAAAATATTTCCATGCAAAAGGAAATCATTAATATCATTTATCTTAACGAGGAGA
322 ATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGA
* * * * * *
3345530 ATGTTTTTATAGTGCTTAATCACAAAATGGATAAA-AACGTTACTAGAATCCATGCTTGTCTCAT
387 ATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCAT
* *
3345594 TTGACGCATGAAC
452 TTGAGGCACGAAC
3345607 CAAAGCGTTA
Statistics
Matches: 2347, Mismatches: 432, Indels: 107
0.81 0.15 0.04
Matches are distributed among these distances:
467 1 0.00
468 163 0.07
469 63 0.03
470 155 0.07
471 31 0.01
472 206 0.09
473 133 0.06
474 129 0.05
475 757 0.32
476 387 0.16
477 316 0.13
478 6 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (474 bp):
AAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCGTCAATATCATCTATCCTAATGAG
AAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTACGACCCA
AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTCTTAGTTCCCAATCTTGAAAAGAATG
GAAACTGTTATGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTTAAAGGAAAATAG
GGCAAAGAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAGAATGT
GTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
GGCACGAACTTAGACTTAC
Found at i:3347034 original size:476 final size:475
Alignment explanation
Indices: 3345604--3349261 Score: 3816
Period size: 476 Copynumber: 7.7 Consensus size: 475
3345594 TTGACGCATG
* * * * *
3345604 AACCAAAGCGTTAATATCGGGTTTCCTTATGAGAAGACTATGTTTATGGTGCCTAATCATGAAAA
1 AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * * * *
3345669 GAATGCGGAGTAGTATGAC--TT-ATGTATGCCATATTTAAGAGACAAACATTGATTCTATCAAA
66 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * **
3345731 AGCAGTGGACAA-AAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
131 AACAGTGGA-AAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * * *
3345795 GAATGTGTTCTTAGTTCCCAATCTTG-AAAGAATAGAGACTGTTATGAGAATTGATTCTTGTCAT
195 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTC-T
* * * *
3345859 T-TTTAAGGGCTGAATTTTGATTTTAA-GAAAAATAGGTAAAGAAAAGATTTCCATGCAAAA-AA
259 TATTTATGGGATGAACTTTGATTTTAAGGAAAAA-AGGTAAAGAAAAGATTTTCATGCAAAAGAA
* * * * * * *
3345921 AAATCATCAATATCTTTTTTCCTAATAAAGAGAATGCGTTTATAGTGCATAATCACAAAATGAAT
323 AACTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * **
3345986 GAAGATCTTTACTAGAATCCATGTTTATCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTG
388 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
* **
3346051 GTTGGAAGAAAAG-CTTTCTTGTGT
453 GTGGGAAG-AAAGCCTTTCTTG-CA
* * * * * * * * *
3346075 AACCAAAGCGTCAATATCGTGCATCTTAATGGGAAGACTATGTTTAGGGAGCATAATCCTAAAAA
1 AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * *
3346140 GAATGGGGATTAGTATGACTATAT-ATGTTTGTCTAATTTAAGAGATAAACTTTGATTCTATAAA
66 GAATGGGGATTAGTATGACTAT-TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * *
3346204 AAACAATGGAAAGAAAACCTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCTAATAAAGG
130 AAACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * *
3346269 GATTGTGTTCTTGGTTCCCAATCTTAAAAAGAATGGAGACTGTTACTAGAATCGATGCTTA-CCT
195 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGC-TAGTCT
* * * * *
3346333 TATTTA-GGGATGAACTTTGGTTTTAAGGACAATAGGGCAAAAAAAAGATTTTCATGCAAAAG-A
259 TATTTATGGGATGAACTTTGATTTTAAGGA-AAAAAGGTAAAGAAAAGATTTTCATGCAAAAGAA
* * *
3346396 AATTCATCAATATCATTTATCCTAAAGAGGAGAAGGTGTTTATAGTGCCTAATCACAAAAT-AGA
323 AACTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA-A
* ** * * * *
3346460 TAAAGATTGTTACTAGAATCCATGCTTGTCTCATTTGACGCATGAATTTAGACTTTGCAAAAATT
387 TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT
* *
3346525 GGTGGGAAGGAAGCCTTTCTTGTGA
452 GGTGGGAAGAAAGCCTTTCTTG-CA
* * * * *
3346550 AACCAAAGCATTAATATCAGT-TTTCCTTATGAGAAGACTATGTTTATAGTGCCTATTCATGAAA
1 AACCAAAGCATTAATATC-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
** ** *
3346614 AGAATGCAGATTTCTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAA
65 AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* ** * * *
3346679 AAATAGTGGGTAGAAAAACTTTTCCTGTGACCCCAAAGTC-TCAATGTCATGTATCCTAATGAAG
130 AAACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAG-CATCAATGTCATGTATCCTAATGAAG
* * * * * * *
3346743 GGAATGTGTTTTTGGTTTCGAATCTAGAAAACAATGGAGACTGTTACAATAATAGATGCTAGTCT
194 GGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCT
* * **
3346808 TATTGATGGGAAGAACTTTGATTTTAAGGAAAAAATGGTAAAGAAAAGATTTTCACACAAAAGAA
259 TATTTATGGGATGAACTTTGATTTTAAGGAAAAAA-GGTAAAGAAAAGATTTTCATGCAAAAGAA
* * ** * *
3346873 AACT-GTGAATATCATTTATCAAAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAAT
323 AACTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * ** * *
3346937 GAAGATCATTAGTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTATACTTTAAAAAAATTG
388 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTG
*
3347002 GTGGGTAGAAAGCCTTTCTTGCA
453 GTGGGAAGAAAGCCTTTCTTGCA
* * * * * * *
3347025 AAGCCAAAGCATCAATATCATCTATCCTAATGTGAAGACTTTGTTTATGGTGCGTAATCCTAAAA
1 AA-CCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
*
3347090 AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTTTTTAAGAGACAAACTTTGATTCTATCAA
65 AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * *
3347155 AAATAGTAGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTGTCCTAATGAAGG
130 AAACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
** * * * * * * *
3347220 GGGTGTGTTTTTAGTTCCAAATCTTGAGAAGAATGGAAACTGTTATGAGAATCAATGCTTGTCTT
195 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTT
* * *
3347285 ATTTATAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTAATGCAAAAGAAA
260 ATTTATGGGATGAACTTTGATTTTAAGGAAAA-AAGGTAAAGAAAAGATTTTCATGCAAAAGAAA
* * * *
3347350 A-TCATCATTATCATTTATCCGAATGAGGAGAATGTGTTTATAATGCCTAATCATAAAATGAATG
324 ACTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* *
3347414 AAGATCATTACTAGAATCCATGTTTGTCAT-ATTTGTGGCATGAACATT-GGCTTTACAAAAATT
389 AAGATCATTACTAGAATCCATGTTTGTC-TCATTTGAGGCATGAAC-TTAGACTTTACAAAAATT
* *
3347477 TGTGGGAAAAAAGCCTTTCTTGCGA
452 GGTGGGAAGAAAGCCTTTCTTGC-A
* * * *
3347502 AACCAAAGCATTAGTATCATGTATCCTAATGAAAAGACTATGTTTATGGTGCCAAAT-CTGGAAA
1 AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAA
* * * *
3347566 AGAATGGGGATTAGTATGATTATTCATGTTTGTCTCATTTAAGAGACAAGCTTTGATTCTATTAA
65 AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
* * * *
3347631 TAACGGTGGAAAAAAAAAGCTTTTCTTGTGACACCAAAGCATCAATGTCATGTAT-CTCAATGAA
130 AAACAGTGGAAAGAAAAA-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGAA
* * * * * ** *
3347695 GGGAATGTGTTCTTT-GTTCCTAATCTTAAAAAGAATGGAGACTATGACGAGAATCGGTTATTGT
193 GGGAATGTGTT-TTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGT
* ** * * * * * **
3347759 CATAAATAAGGGCTGAATTTTGATTTTAGGGAAAATAAGGTAAA-AAAAGATTTCCACACAAAAG
257 CTTATTTATGGGATGAACTTTGATTTTAAGGAAAA-AAGGTAAAGAAAAGATTTTCATGCAAAAG
* * * ** * * ** *
3347823 AAAA-TCATCAATACCATTAATCCTAATAAGGAGGTTGCGTTTATACTGTTTAATCACAAAATAA
321 AAAACTCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * ** *
3347887 ATAAAGATCATTACTAG-AGCCTATGTTTATCTCATTCAAGGCATGAACTTAGATTTTACAAAAA
386 ATGAAGATCATTACTAGAATCC-ATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
*
3347951 TTGGTGAGAAGAAAGCC--T-TT---
450 TTGGTGGGAAGAAAGCCTTTCTTGCA
* * **
3347971 -A-C-AA--A-T-AT-T-ATGTATCCTTATGAGAAGACTACATTTATGGTGCCTAAT-CTAGAAA
1 AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCT-G-AA
* * * ** *
3348026 AAAAATTGGGGATTAGTATGA-TGATTCATATTTGCCAAATTTAAAAGACAAACTTTGATTCT-T
64 AAGAA-TGGGGATTAGTATGACT-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* ** * *
3348089 CCTAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATG
127 -CAAAAACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG
** * * * * *
3348154 AAGGGAATGTGTTTTTGGTTCTGAATCTGGAAAAGAATGGAGACTGTTACAAGAATGGGTGTTAG
191 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAG
* ** * *
3348219 CCTTATTTATGGGATGAACTTTGATTTTACA--AAAAATTA-GCCAAG-ACAGATTTCCATGCAA
256 TCTTATTTATGGGATGAACTTTGATTTTA-AGGAAAAA--AGGTAAAGAAAAGATTTTCATGCAA
* ** *
3348280 AAGAAAA-TCAAT-AGTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTATCTAACCACAAA
318 AAGAAAACTC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * * * * *
3348343 ATGAATGAAAATTAGTT-CTAAAATGCGTGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATA
382 ATGAATGAAGATCA-TTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACA
* * *
3348407 AAAATTGGAGGGAAGAAAACATTTCTTGCAA
446 AAAATTGGTGGGAAGAAAGCCTTTCTTGC-A
* * * *
3348438 AACCAAAGCAATAATATCGTCTATCCTAATGAGAAGACTATGTTTAGGGTGCCTAATCCTAAAAA
1 AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* ** * ** * * * *
3348503 GAATGGGGATTAGTTTGACTATTCACATTTATCTCCTTTAAGGGACGAACTTTGATTTTATTAAA
66 GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * * * *
3348568 AACGGTGGAAACAAAAACTTTTCTTGTGACACTAAATCATCAATGTCATGTATCCTAATGAAAGG
131 AACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
*
3348633 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATTGATGCTAGTCTTA
196 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTTA
* * ** *
3348698 TTTATGGGATGAACTTTGATTTTAAGTAAAATAGGGCAAGAAAAGATTTTGATGCAAAAGAAAA-
261 TTTATGGGATGAACTTTGATTTTAAGGAAAAAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAAC
* * *
3348762 TCATCGATATCATTTAT-TTGAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
326 TCATCAATATCATTTATCCT-AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * *
3348826 GGATCATTACTAGAATCCATGTTTCTCTCATTTGAAGCATGAACTTAGACTTTACAAAAATTGGT
390 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGT
*
3348891 GGGAAGAAAGCCTTTCTTACGA
455 GGGAAGAAAGCCTTTCTTGC-A
* * * *
3348913 AACCAAAGCGTCCAA-ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCTTAATCCTGAAA
1 AACCAAAGCAT-TAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* * * * * * * *
3348977 AAAATGAGGATTAGTATGACTATTCATGTTTATCTCT-TTTTAGGGGCGAACATTGATTCTATCA
65 AGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATTCTATCA
* * * * **
3349041 AAAATAG-CGAAA-AAAAAGCTTTTCTTACGAGACCAAAGCATCAATGTCATGCGTCCTAATGAA
129 AAAACAGTGGAAAGAAAAA-CTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * * * * *
3349104 AGGAATGTGCTTTTGGTTCCCAATTTTGAGAAGAATGGAAACTATTATGAGAATCGATGCTTGTC
193 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTC
* *
3349169 TTATTTATAGGATGAACTTTAATTTTAA-GAAAAATAGGGTAAAGAAAAGATTTTCATGCAAAAG
258 TTATTTATGGGATGAACTTTGATTTTAAGGAAAAA-A-GGTAAAGAAAAGATTTTCATGCAAAAG
*
3349233 AAAA-TCATCAGTATCATTTATCCTAATGA
321 AAAACTCATCAATATCATTTATCCTAATGA
3349262 AAAGACTTTG
Statistics
Matches: 2639, Mismatches: 468, Indels: 156
0.81 0.14 0.05
Matches are distributed among these distances:
459 1 0.00
460 169 0.06
461 126 0.05
462 67 0.03
463 3 0.00
464 1 0.00
466 2 0.00
467 1 0.00
468 2 0.00
469 1 0.00
470 2 0.00
471 70 0.03
472 1 0.00
473 17 0.01
474 460 0.17
475 725 0.27
476 851 0.32
477 137 0.05
478 3 0.00
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
AACCAAAGCATTAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
GAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
AACAGTGGAAAGAAAAACTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGG
AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTTA
TTTATGGGATGAACTTTGATTTTAAGGAAAAAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAAC
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTG
GGAAGAAAGCCTTTCTTGCA
Done.