Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold446
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3567220
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 21 of 22
Found at i:3352736 original size:476 final size:476
Alignment explanation
Indices: 3349343--3354369 Score: 6264
Period size: 476 Copynumber: 10.6 Consensus size: 476
3349333 AATCATCAGT
* * * * *
3349343 ATCAATGTCATATATCCTAATGAAGGGAATGTCTTTTTGGTTC-CAAATCTGGAAAATAATGGGG
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTC-AATCTTGAAAAGAATGGAG
* ** *
3349407 ACTGTTAAGAGAATCAATGCTAGTCTTATTTATGGGATGAACTTTGA-TTT------CA-AGGGC
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * * * * *
3349464 AAGGAAAAAATTTCCATGCAAAATATAATCATCAATATCATTTATCCTAATGAGGAGAATGTTTT
130 AAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
* * * * *
3349529 TGTAGTGTCTAATCACAAAATCAATGAAGATCATTACTAGAATTCATGTTTGTCTCATTTAAGGC
195 TATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * * ***
3349594 ACGAAGTTAGATTTTACAAAAATTGGTGGGAAGAAATCCTTTCTT-ACGAAACCAAAGTGCCAAT
260 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGA-GAAGCCAAAGCATCAAT
* * * * * * *
3349658 ATCATGTATCTTTAGGATAAGA-TTATGTTTATAGAGCCTAATCTTGAAAAGAATGAGGATTAGT
324 ATCGTGTATCCTAATGAGAAGACTT-TGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGT
* * * * *
3349722 ATGACTATTCATGTTTATCT-TCTTTGAGGGACGAACTTTGATTCTACCAAAAACAGTGAAAAGA
388 ATGACTATTCATGTTTGTCTCT-TTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA
* *
3349786 AAAGCTTTTCTTGTGGCACCAAATC
452 AAAGCTTTTCTTGCGACACCAAATC
* * * * * *
3349811 ATCAATGTCATATATCCTACTGAAGGGAAAGTGTTTTAGGTTC-CGAATCTGGATAAGAATGGAG
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTC-AATCTTGAAAAGAATGGAG
* * *
3349875 ACTGTTACAAGAA-T--CGCTAGTCTTATTTATGGGATGAACTTTGATTTCAAGGAAAATAGGGC
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* *
3349937 AAGGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGCT-T
130 AAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATG-TGT
*
3350001 TTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
194 TTATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * *
3350066 CACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGATGCCAAAGCATCAAT
259 CATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAAT
* * * * * *
3350131 ATCATCTATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCCT-AAAATGAATGGGGATTAAT
324 ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAA-GAATGAGGATTAGT
* *
3350195 ATGACTATTCATATTTGTCTCTTTTGAGGG-TCGAACTTTGATTCTATCAAAAATGGTGGAAAGA
388 ATGACTATTCATGTTTGTCTCTTTTGAGGGAT-GAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * *
3350259 AAACCTTTTTTTACGACACCATATC
452 AAAGCTTTTCTTGCGACACCAAATC
* * * * ** * * *
3350284 ATCAATGTCATGCACCCGAATGAAGCGAATGCCTTTTTGGTTCTGAATCTAGAAAATAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA
* * * * *
3350349 CTGGTACGAG-ATCGATACTAGTCTTATTTATGGGAAGAGCTTTGATTTTAAGGAAAATAGGGCA
66 CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * *
3350413 AGGAAAAGGTTTCAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTT
131 AGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTT
* * * *
3350478 ATAGTGTCTAATCATAGAATGAATGAGGATCACTACAAGAATCCATGTTTGTCTCATTTGAGGCA
196 ATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* ** * * * *
3350543 TAAACTTA-ACCTTTACCTAAATTGGTGGGAAGAAAACCTCTCTT-ACGAAACCAAAGCAGCAAT
261 TGAACTTAGA-CTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGA-GAAGCCAAAGCATCAAT
* * * * ** *
3350606 ATCGTGTATCCTTATGAGGAGACTATGTTTATGGTGCCTAACCCAGAAAAGAATGAGGATCAGTA
324 ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTA
* * * * *
3350671 TGACTATTCATGTTTGTCTCCTTGGAGGGATGGAAATTTGATTCTATCAGAAATGGTGGAAAGAA
389 TGACTATTCATGTTTGTCTCTTTTGAGGGAT-GAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* *
3350736 AACCTTTTCTTGTGACACCAAATC
453 AAGCTTTTCTTGCGACACCAAATC
* * * *
3350760 ATCAATGCCATGTATCCTAACGAAGGGAATGTCTTTTTGGTTC-CTAATCTTGAAAAGAGTGGAG
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTC-AATCTTGAAAAGAATGGAG
* * * * * * *
3350824 ACTTTTATGAGAATTGATGCTAGCCTTGTTTATGGGATGAGCTTTGATTTTAAGGAAAATAAGGT
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * * *
3350889 AAGAAAAAGATTCCGATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTT
130 AAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
* * * * *
3350954 TCTAGTGTCTAATCATAGAATGAATGAGGATCACTACAAGAATCCATGTTTGTCTCATTTGAGGC
195 TATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * * *
3351019 ATGAACTTAGACTATACAAAAATTGGTAGGAAGAAAGCCTTTATTGGGAAGCCAAAGCATCAATA
260 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATA
* * *
3351084 TCGTATATCCTAATGAGAGGACTTTGTTTAT-GTGCCTAATAC-AGAAAAGAATGAGGATTAGTA
325 TCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAAT-CTTGAAAAGAATGAGGATTAGTA
* * * *
3351147 TGACTATTAATGTCTGTCTCCTTTAAGGGATG-ACTTTGATTCTATCAAAAACGGTGGAAAGAAA
389 TGACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
*
3351211 AGCATTTCTTGCGACACCAAATC
454 AGCTTTTCTTGCGACACCAAATC
* * * * *
3351234 ATCAATGTCATGTATCCTAAAGAAAGGAATTGTGTTTTTAGTTCTGAATCTAGAAAAGAATGGAG
1 ATCAATGTCATGTATCCTAATGAAGGGAA-TGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAG
* * ** * *
3351299 ACTATTATGAGAATCAATGCTAGTCTTATTTATGGGATGAACTTTGATTTCAAGGAAAATAAGGC
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
** * * * * * *
3351364 AAGGAAAAGATTTTC-ACACAAAAAAAAATCACCAGTATTGTATATCCTAATGAGGAGAATGTTT
130 AAGGAAAAGA-TTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGT
* *
3351428 TTATAGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGG
194 TTATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* * * * * *
3351493 CACGAAGTTGGACTTTATAAAAATTTGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGTATCAAT
259 CATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAAT
** * * *
3351558 ATCGCCTATCCTAATGAGAAGAGTTTATTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTA
324 ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTA
* * * *
3351623 TGACTATTCATGTTTGTCTCCTATTG-GGGACGAACATTGATTCTATCAAAAACGATGGAAAGAA
389 TGACTATTCATGTTTGTCT-CTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* *
3351687 AAGCTTTTCTTGCAACCCCAAATC
453 AAGCTTTTCTTGCGACACCAAATC
* * *
3351711 ATCAATGTCATGTATCCTAAAGAAAGGAATGTATTTTTGGTTC-CAAATCTTGAAAAGAATGGAG
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTC-AATCTTGAAAAGAATGGAG
* * * * *
3351775 ACTGTTA-GAAGAATTGATGCTAGGCATAATTATGGGATGAACCTTGATTTTAAGTAAAATAGGG
65 ACTGTTACG-AGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGG
* * * * * * *
3351839 CAA-GAAAAGATTTTGACGGAAAAGAAAATCATCGATATCATTTAT-CTGAATAAGGACAATGTG
129 CAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCT-AATGAGGAGAATGTG
* * * *
3351902 TTTATAGTGTCTAATCACCAAATGAAAGAGGATCATTACTACAATCCATGTTTGTCTCATTTGAA
193 TTTATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAG
* *
3351967 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-ACGAAACCAAAGCATCA
258 GCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGA-GAAGCCAAAGCATCA
*
3352031 ACATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAG
322 ATATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAG
* ** * *
3352096 TATGACTATTAATGTTTGTCTCCATGGCGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA
387 TATGACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA
3352161 AAAGCTTTTCTTAG-GACACCAAATC
452 AAAGCTTTTCTT-GCGACACCAAATC
* * * * * *
3352186 ATCAATGTCATATATCCTAACGAAGGGAATGTCTTTTTAGTTCCCAATCATGAAAAGAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA
* * *
3352251 CTTTTATGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATGGGGCA
66 CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * *
3352316 AGGAAAAGA-TTCTGATGCAAAAGAAAATCATTAATATCGTTCATCTTAATGAAGAGAATGTGTT
131 AGGAAAAGATTTC-GATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
* * * * * * *
3352380 TATAGTGTCTAATCACAAAATGAATGAGGATCACTGCAAGAATCTATGTTCGTCTGATTTGGGGC
195 TATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* *
3352445 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAATCC-TTCATTGAGAAGCCGAAGCATCAAT
260 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTC-TTGAGAAGCCAAAGCATCAAT
* * **
3352509 ATCGTTTATCCTAATGAGAAGATTTTGTTTATGGTGCCTAATAC-AAAAAAGAATGAGGATTAGT
324 ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAAT-CTTGAAAAGAATGAGGATTAGT
* *
3352573 ATGACTATTCATGTCTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAATGGTGGAAA-AA
388 ATGACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAA
*
3352637 AGAGCATTTCTTGCGACACCAAATC
453 A-AGCTTTTCTTGCGACACCAAATC
* * *
3352662 ATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCTGAATCTAGAAAAGAATGGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA
* * * * *
3352727 CTGTTATGAGAATCGTTGCTAGTCTTATTTATGGTAT-AAGCTTTGATTTCAAGGAAAATAGGGC
66 CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAA-CTTTGATTTTAAGGAAAATAGGGC
* *** * * *
3352791 AAGGAAAAGATTTCAATGCAAAAGAAAATCATTTGTATCGTCTATCCTAATGAGGAAAATGTTTT
130 AAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
* *
3352856 TATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAAAATCCATGTTTGTCTCATTTGAGGC
195 TATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
* * *
3352921 ATGAAGTTGGACTTT-CTAAAAATTGGTGGGAAAAAAGCCTTTCTTGAGAAGCCAAAGCATCAAT
260 ATGAACTTAGACTTTAC-AAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAAT
3352985 ATCGTGTATCCTAATGAGAAGACTTTGTTTAT-GTGGCCTAATCTTGAAAAGAATGAGGATTAGT
324 ATCGTGTATCCTAATGAGAAGACTTTGTTTATGGT-GCCTAATCTTGAAAAGAATGAGGATTAGT
* * * * *
3353049 TTGACTATTTAGGTTTGTCTCCTTTT-AGGGATGAACATTGATTCTATCAAAACCGGTGGAAAGA
388 ATGACTATTCATGTTTGTCT-CTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA
3353113 AAAGCTTTTCTTGCGACACCAAATC
452 AAAGCTTTTCTTGCGACACCAAATC
* * * * * *
3353138 ATCAATGCCATGTATCCTAATGATA-GAAAAGTATTTTTGGTTCTCAAACTTGAAAAGAATAGAG
1 ATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAG
** * *
3353202 ACTACTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATATGGT
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
* * * * * *
3353267 GAGGAAAA-ATTTTTGGTGCAAAAGAAAATCATCGATATTGTTTATCCTAATAAGGAGAATGTGT
130 AAGGAAAAGA-TTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGT
* * * * * *
3353331 TTATAGTGTGTAATCACAAAATGAATGAGGATCTTTACTAGAATCTATCTTTGTTTCATTTGAAG
194 TTATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
* ** * * **
3353396 CATGAACTTAGACTCTACAAAAACCGGTGGGAAGAAAGCCTTTCTT-ACGAAACTAAAGTGTCAA
259 CATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGA-GAAGCCAAAGCATCAA
* * *
3353460 TATTGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGACTAGT
323 TATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGT
* * * * *
3353525 ATGACTATTCAAGTTTGTCTCCTTTT-AGGGACGAACATTAATTCTACCAAAAACGGTGGAAAGA
388 ATGACTATTCATGTTTGTCT-CTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA
*
3353589 AAAGCTTTTCTTGCGACACCAAAGC
452 AAAGCTTTTCTTGCGACACCAAATC
* *
3353614 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGA
1 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA
*
3353679 CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAACAGGGCA
66 CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * *
3353744 AGGGAAATATTTCGATGTAAAAGAAAATCATTAATATCG-TTATCCTAATGAGGAGAATGTTTTT
131 AGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTT
* * * *
3353808 ATAGTGTCTAATCATAAAATGAATGAAGATCATTTCTAGAATCCATGTTCGTCTCATTTTGAGGC
196 ATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCA-TTTGAGGC
* * * ** * * *
3353873 ATTAAGTCAGACTTTGTAAAAATTGGTGGGAAGAAAGCCTTTATTAAGAAGCCGAAGCATCAATA
260 ATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATA
* * * *
3353938 TCGTCTATCCTAATGGGAAGACTTTGTTTATGGTGCCTAGTCTAGAAAAGAATGAGGATTAGTAT
325 TCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTAT
* * * *
3354003 CACTATTCATATTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGACAA
390 GACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAA
* *
3354068 GCATTTCTTGCTACACCAAATC
455 GCTTTTCTTGCGACACCAAATC
*
3354090 ATCAATGTCATGTATCCTAAAT-AAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAA
1 ATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAG
* * * ** *
3354154 ACTTTTACAAGAATGGATGCTAGTCTTATTTATGGGATGAACTTCAACTTTAAGGAAAATAGGGC
65 ACTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGC
*
3354219 AAGGAAAAGATTTCGATGTAAAA-AAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
130 AAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
* * * * *
3354283 TATAGGGTCTAATCACAAAATGAATAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGC
195 TATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGC
** *
3354348 AAAAATTTAGACTTTACAAAAA
260 ATGAACTTAGACTTTACAAAAA
3354370 CATTTGAGGC
Statistics
Matches: 3941, Mismatches: 545, Indels: 139
0.85 0.12 0.03
Matches are distributed among these distances:
465 29 0.01
466 2 0.00
468 67 0.02
472 6 0.00
473 354 0.09
474 93 0.02
475 1094 0.28
476 1938 0.49
477 357 0.09
478 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (476 bp):
ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAGA
CTGTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
AGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTT
ATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
TGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATAT
CGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATG
ACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
CTTTTCTTGCGACACCAAATC
Found at i:3353107 original size:158 final size:156
Alignment explanation
Indices: 3350591--3354150 Score: 566
Period size: 159 Copynumber: 22.4 Consensus size: 156
3350581 TCTCTTACGA
* * * * * * **
3350591 AACCAAAGCAGCAATATCGTGTATCCTTATGAGGAGACTATGTTTATGGTGCCTAACCCAGAAAA
1 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAAA
* * **
3350656 GAATGAGGA-TCAGTATGACTATTCATGTTTGTCTCCTTGGAGGGATGGAA-ATTTGATTCTATC
66 GAATGAGGACT-ACTATGACTATTTATGTTTGTCTCCTTTTAGGGAT-GAACA-TTGATTCTA-C
* * * * *
3350719 AGAAATGGTGGAAAGAAAACCTTTTCTTGTG
127 AAAAACGGTGGGAA-AAAAGCTTTTCTTGAG
* ** * * * * * * *
3350750 ACACCAAATCATCAATGCCATGTATCCTAACGA-AGGGAATGTCTTTTTGGTTCCTAATCTTGAA
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGAATTTGTTTATGGTGCCTAATCTTGAA
* ** ** * * * * * * *
3350814 AAGAGTG-GAGACTTTTATGAGAATTGATGCTAG-C-CTTGTTTATGGGATGAGCTTTGATTTTA
64 AAGAATGAG-GACTACTATGACTATTTATGTTTGTCTCCT-TTTA-GGGATGAACATTGATTCT-
* * ** * * * *
3350876 AGGAAAATAAGGTAAG-AAAAAG-ATTCCGATGCAA
125 A-CAAAA-ACGGTGGGAAAAAAGCTTTTC-TTG-AG
** * * * * * * * *
3350910 AAGAAAATCATCAATATCATTTATCCTAATGA-AGAGAATGTGTTTCTAGTGTCTAATCAT-AGA
1 AACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGAATTTGTTTATGGTGCCTAATCTTGA-A
* ** ** ** * * * * *
3350973 ATGAATGAGGA-TCACTACAAGAATCCATGTTTGTCTCATTTGAGGCATGAAC-TTAGACTATAC
64 AAGAATGAGGACT-ACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATT-GATTCTAC
* * * * * *
3351036 AAAAATTGGTAGGAAGAAAGCCTTTATTGGG
127 AAAAA-CGGTGGGAAAAAAGCTTTTCTTGAG
* * * *
3351067 AAGCCAAAGCATCAATATCGTATATCCTAATGAGAGGACTTTGTTTAT-GTGCCTAATAC-AGAA
1 AA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAAT-CTTGAA
* * * * * *
3351130 AAGAATGAGGATTAGTATGACTATTAATGTCTGTCTCCTTTAAGGGATG-ACTTTGATTCTATCA
64 AAGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CA
* * *
3351194 AAAACGGTGGAAAGAAAAGCATTTCTTGCG
128 AAAACGGTGGGAA-AAAAGCTTTTCTTGAG
* * * * * * * *
3351224 ACACCAAATCATCAATGTCATGTATCCTAAAGA-AAGGAATTGTGTTTTTAGT-TCTGAATCTAG
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGAA-GAATT-TGTTTATGGTGCCT-AATCTTG
* ** ** * * *
3351287 AAAAGAATG-GAGACTATTATGAGAATCAATGCTAGTCT--TATTTATGGGATGAACTTTGATT-
62 AAAAGAATGAG-GACTACTATGACTATTTATGTTTGTCTCCT-TTTA-GGGATGAACATTGATTC
**** * * *** *
3351348 T-CAAGGAAAATAAGGCAAGGAAAAGATTTTCACACAA
124 TACAA--AAACGGTGGGAA--AAAAGCTTTTC-TTGAG
** * * * * * * * * **
3351385 AAAAAAATCACCAGTATTGTATATCCTAATGAGGAGAATGTT-TTTATAGTGTCTAATC-ACAAA
1 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAT-TTGTTTATGGTGCCTAATCTTGAAA
* * ** * * * * *
3351448 ATGAATGAAGTTCATTACTA-GA--ATCCATGTTTGTCTCATTTGAGGCACGAA-GTTGGACTT-
65 A-GAATG-AG--GACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATT-GA-TTC
* ** * *
3351508 TATAAAAATTTGTGGGAAGAAAGCCTTTCTTGAG
124 TACAAAAA-CGGTGGGAAAAAAGCTTTTCTTGAG
* ** * * *
3351542 AAGCCAAAGTATCAATATCGCCTATCCTAATGAGAAGAGTTTATTTATGGTGCCTAATCCTGAAA
1 AA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
* * * * * *
3351607 AGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTATTGGGGACGAACATTGATTCTATCAA
65 AGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CAA
* *
3351672 AAACGATGGAAAGAAAAGCTTTTCTTGCA-
129 AAACGGTGGGAA-AAAAGCTTTTCTTG-AG
* * * * * * * * * *
3351701 ACCCCAAATCATCAATGTCATGTATCCTAAAGA-AAGGAATGTATTTTTGGTTCCAAATCTTGAA
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGAA-GAATTTGTTTATGGTGCCTAATCTTGAA
** ** * * * * ** * * *
3351765 AAGAATG-GAGACTGTTA-GAAGAATTGATGCTAGGCATAATTAT-GGGATGAACCTTGATTTTA
64 AAGAATGAG-GACTACTATG-ACTATTTATGTTTGTC-TCCTTTTAGGGATGAACATTGATTCTA
** * * * *
3351827 -AGTAAAATAG-GGCAAGAAAAGATTTTGAC-GGAA
126 CA--AAAACGGTGGGAA-AAAAGCTTTT--CTTGAG
** * * * * * * * * * * ***
3351860 AAGAAAATCATCGATATCATTTAT-CTGAATAAGGACAATGTGTTTATAGTGTCTAATCACCAAA
1 AACCAAAGCATCAATATCGTGTATCCT-AATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
* * * * ** * * * *
3351924 TGAAAGAGGA-TCATTACT-ACAATCCATGTTTGTCTCATTTGAAGCATGAAC-TTAGACTT-TA
65 AGAATGAGGACT-ACTA-TGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATT-GA-TTCTA
* *
3351985 CAAAAATTGGTGGGAAAAAAGCCTTTCTT-ACG
126 CAAAAA-CGGTGGGAAAAAAGCTTTTCTTGA-G
* *
3352017 AAACCAAAGCATCAACATCGTGTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAA
1 -AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
* * * * *** *
3352082 AGAATGAGGATTAGTATGACTATTAATGTTTGTCTCCATGGCGGGATGAACTTTGATTCTATCAA
65 AGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CAA
*
3352147 AAACGGTGGAAAGAAAAGCTTTTCTT-AGG
129 AAACGGTGGGAA-AAAAGCTTTTCTTGA-G
* * * * * * * * * * * * *
3352176 ACACCAAATCATCAATGTCATATATCCTAACGA-AGGGAATGTCTTTTTAGTTCCCAATCATGAA
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGAATTTGTTTATGGTGCCTAATCTTGAA
** ** * * * * *
3352240 AAGAATG-GAGACTTTTATGAGAATTGATGCTAGTCT--TATTTATGGGATGAACTTTGATTTTA
64 AAGAATGAG-GACTACTATGACTATTTATGTTTGTCTCCT-TTTA-GGGATGAACATTGATTCTA
* * * * ** *
3352302 -AGGAAAATGG-GGCAAGGAAAAGATTCTGATGCAA
126 CA--AAAACGGTGGGAA--AAAAGCTTTTCTTG-AG
** * * * * * * **
3352336 AAGAAAATCATTAATATCGT-TCATCTTAATGA-AGAGAATGTGTTTATAGTGTCTAATC-ACAA
1 AACCAAAGCATCAATATCGTGT-ATCCTAATGAGA-AGAATTTGTTTATGGTGCCTAATCTTGAA
* * * ** *
3352398 AATGAATGAGGA-TCACTGCAAGA--ATCTATGTTCGTCT-GATTTGGGGCATGAAC-TTAGACT
64 AA-GAATGAGGACT-ACT--ATGACTATTTATGTTTGTCTCCTTTTAGGG-ATGAACATT-GA-T
* * * *
3352458 T-TACAAAAATTGGTGGGAAGAAATC-CTTCATTGAG
122 TCTACAAAAA-CGGTGGGAAAAAAGCTTTTC-TTGAG
* * * **
3352493 AAGCCGAAGCATCAATATCGTTTATCCTAATGAGAAGATTTTGTTTATGGTGCCTAATAC-AAAA
1 AA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAAT-CTTGAA
* * * * *
3352557 AAGAATGAGGATTAGTATGACTATTCATGTCTGTCT-CTTTTGAGGGATGAACTTTGATTCTATC
64 AAGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTT-AGGGATGAACATTGATTCTA-C
* * * *
3352621 AAAAATGGTGGAAAAAAGAGCATTTCTTGCG
127 AAAAACGGTGGGAAAAA-AGCTTTTCTTGAG
* * * * * * *
3352652 ACACCAAATCATCAATGTCATGTATCCTAA--AGAAGGGAATGTGTTTTTGGT-TCTGAATCTAG
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGAA--GAATTTGTTTATGGTGCCT-AATCTTG
** ** * * * * *
3352714 AAAAGAATG-GAGACTGTTATGAGAATCGT-TGCTAGTCT--TATTTATGGTAT-AAGCTTTGAT
62 AAAAGAATGAG-GACTACTATGACTAT-TTATGTTTGTCTCCT-TTTA-GGGATGAA-CATTGA-
* ** ** * * * *
3352774 TTCAAGGAAAATAG-GGCAAGGAAAAG-ATTTCAATGCAA
121 TTCTACAAAAACGGTGGGAA--AAAAGCTTTTC-TTG-AG
** * *** * * * **
3352812 AAGAAAATCATTTGTATCGTCTATCCTAATGAGGAA-AATGTT-TTTATAGTGTCTAATC-ACAA
1 AACCAAAGCATCAATATCGTGTATCCTAATGA-GAAGAAT-TTGTTTATGGTGCCTAATCTTGAA
* * ** * * * *
3352874 AATGAATGAAGATCATTACTA--A-AATCCATGTTTGTCTCATTTGAGGCATGAA-GTTGGACTT
64 AA-GAATGAGGA-C--TACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATT-GA--T
** *
3352935 TCTA-AAAATTGGTGGGAAAAAAGCCTTTCTTGAG
122 TCTACAAAAACGGTGGGAAAAAAGCTTTTCTTGAG
*
3352969 AAGCCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTTTGTTTAT-GTGGCCTAATCTTGAA
1 AA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGT-GCCTAATCTTGAA
* * * *
3353033 AAGAATGAGGATTAGTTTGACTATTTAGGTTTGTCTCCTTTTAGGGATGAACATTGATTCTATCA
64 AAGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CA
* * *
3353098 AAACCGGTGGAAAGAAAAGCTTTTCTTGCG
128 AAAACGGTGGGAA-AAAAGCTTTTCTTGAG
* ** * * * *
3353128 ACACCAAATCATCAATGCCATGTATCCTAATGATAGAA-AAGTAT-TTT-TGGT-TCTCAAACTT
1 A-ACCAAAGCATCAATATCGTGTATCCTAATG--AGAAGAA-TTTGTTTATGGTGCCT-AATCTT
* ** * * * *
3353189 GAAAAGAAT-AGAGACTACTACGAGAATTGATGCTAGTCT--TATTTATGGGATGAACTTTGATT
61 GAAAAGAATGAG-GACTACTATGACTATTTATGTTTGTCTCCT-TTTA-GGGATGAACATTGATT
* * * * ** *
3353251 TTAAGGAAAATATGGTGAGG-AAAAA-TTTTTGGTGCAA
123 CT-A-CAAAA-ACGGTG-GGAAAAAAGCTTTTCTTG-AG
** * * * * * * * * ** **
3353288 AAGAAAATCATCGATATTGTTTATCCTAATAAGGAGAATGTGTTTATAGTGTGTAATC-ACAAAA
1 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAAA
* * * * * * * *
3353352 TGAATGAGGATCTTTACTA-GA--ATCTATCTTTGTTTCATTTGAAGCATGAAC-TTAGACTCTA
66 -GAATGAGGA-C--TACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATT-GATTCTA
* *
3353413 CAAAAACCGGTGGGAAGAAAGCCTTTCTT-ACG
126 CAAAAA-CGGTGGGAAAAAAGCTTTTCTTGA-G
* ** *
3353445 AAACTAAAGTGTCAATATTGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
1 -AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
* * * * *
3353510 AGAATGAGGACTAGTATGACTATTCAAGTTTGTCTCCTTTTAGGGACGAACATTAATTCTACCAA
65 AGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CAA
* *
3353575 AAACGGTGGAAAGAAAAGCTTTTCTTGCG
129 AAACGGTGGGAA-AAAAGCTTTTCTTGAG
* * * * * * *
3353604 ACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCTTGAA
1 A-ACCAAAGCATCAATATCGTGTATCCTAATGAGA-AGAATTTGTTTATGGTGCCTAATCTTGAA
** * ** * * * * *
3353668 AAGAAT-AGAGACTGTTACGAGAATTGATGCTAGTCT--TATTTATGGGATGAACTTTGATTTTA
64 AAGAATGAG-GACTACTATGACTATTTATGTTTGTCTCCT-TTTA-GGGATGAACATTGATTCTA
* * * * *
3353730 -AGGAAAACAG-GGCAAGGGAAA--TATTTCGATGTAA
126 CA--AAAACGGTGGGAA--AAAAGCT-TTTC-TTG-AG
** * * * * * *
3353764 AAGAAAATCATTAATATCGT-TATCCTAATGAGGAGAATGTT-TTTATAGTGTCTAATCAT-AAA
1 AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAAT-TTGTTTATGGTGCCTAATCTTGAAA
* * ** * * * *
3353826 ATGAATGAAGATCATTTCTA-GA--ATCCATGTTCGTCTCATTTTGAGGCATTAAGTCA--GACT
65 A-GAATGAGGA-C--TACTATGACTATTTATGTTTGTCTCCTTTT-AGGGATGAA--CATTGA--
* ** * * * *
3353886 TTGTA-AAAATTGGTGGGAAGAAAGCCTTTATTAAG
121 TTCTACAAAAACGGTGGGAAAAAAGCTTTTCTTGAG
* * * * * *
3353921 AAGCCGAAGCATCAATATCGTCTATCCTAATGGGAAGACTTTGTTTATGGTGCCTAGTCTAGAAA
1 AA-CCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAA
* * * * * * *
3353986 AGAATGAGGATTAGTATCACTATTCATATTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAA
65 AGAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTA-CAA
* **
3354051 AAACGGT-GGAAAGACAAGCATTTCTTGCT
129 AAACGGTGGGAAA-A-AAGCTTTTCTTGAG
* * * * * * * *
3354080 ACACCAAATCATCAATGTCATGTATCCTAAATAAG-GGAATGTGTTTTTGGT-TCTCAATCTTGA
1 A-ACCAAAGCATCAATATCGTGTATCCT-AATGAGAAGAATTTGTTTATGGTGCCT-AATCTTGA
3354143 AAAGAATG
63 AAAGAATG
3354151 GAAACTTTTA
Statistics
Matches: 2429, Mismatches: 710, Indels: 524
0.66 0.19 0.14
Matches are distributed among these distances:
155 13 0.01
156 41 0.02
157 191 0.08
158 782 0.32
159 1110 0.46
160 230 0.09
161 45 0.02
162 17 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (156 bp):
AACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAATCTTGAAAA
GAATGAGGACTACTATGACTATTTATGTTTGTCTCCTTTTAGGGATGAACATTGATTCTACAAAA
ACGGTGGGAAAAAAGCTTTTCTTGAG
Found at i:3354440 original size:158 final size:158
Alignment explanation
Indices: 3354242--3354527 Score: 473
Period size: 158 Copynumber: 1.8 Consensus size: 158
3354232 CGATGTAAAA
**
3354242 AAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGGGTCTAATCACAAAATGAA
1 AAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTATAGGGTCTAATCACAAAATGAA
* *
3354307 TAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAATTTAGACTTTACAAAAACA
66 TAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAACA
3354372 TTTGAGGCAAAAGATTCTGAAGGAGAAG
131 TTTGAGGCAAAAGATTCTGAAGGAGAAG
* *
3354400 AAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTGTAGTGTCTAATCACAAAATGAA
1 AAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTATAGGGTCTAATCACAAAATGAA
* * * **
3354465 TGAGGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTCTACAAAAA
66 TAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAA
3354528 TTGGTGGGAA
Statistics
Matches: 117, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
158 117 1.00
ACGTcount: A:0.39, C:0.15, G:0.17, T:0.29
Consensus pattern (158 bp):
AAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTATAGGGTCTAATCACAAAATGAA
TAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAACA
TTTGAGGCAAAAGATTCTGAAGGAGAAG
Found at i:3354599 original size:158 final size:157
Alignment explanation
Indices: 3354242--3354629 Score: 428
Period size: 158 Copynumber: 2.5 Consensus size: 157
3354232 CGATGTAAAA
* * *
3354242 AAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGGGTCTAATCACAAAATGAA
1 AAAAGCATCAATATCGTTTATCCTAATGA-GAAAATGTGTTTATAGTGTCTAATCACAAAATGAA
* * *
3354307 TAAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAATTTAGACTTTACAAAAACA
65 TGAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAACA
*
3354372 TTTGAGGCAAAAGATTCTGAAGGAGAAG
130 TTTGAGGAAAAAGATTCTGAAGGAGAAG
* * *
3354400 AAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTGTAGTGTCTAATCACAAAATGAA
1 AAAAGCATCAATATCGTTTATCCTAATGAGAA-AATGTGTTTATAGTGTCTAATCACAAAATGAA
* * **
3354465 TGAGGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTCTAC-AAAA-A
65 TGAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAACA
* * *
3354528 TTGGTG-GGAAGAAAGCCTT-T-AATGTGAAG
130 TT--TGAGGAA-AAAG-ATTCTGAAGGAGAAG
* * * * * * * *
3354557 CCAAAGCATTAATATCGTGTATCCAAATGAGAAAACTATGTTTATGGTGCCTAATC-CAAAAAAG
1 -AAAAGCATCAATATCGTTTATCCTAATGAGAAAA-TGTGTTTATAGTGTCTAATCAC-AAAATG
3354621 AATGAGGAT
63 AATGAGGAT
3354630 TAGTATGACT
Statistics
Matches: 196, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
156 3 0.02
157 18 0.09
158 173 0.88
159 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28
Consensus pattern (157 bp):
AAAAGCATCAATATCGTTTATCCTAATGAGAAAATGTGTTTATAGTGTCTAATCACAAAATGAAT
GAGGATCACTACTAGAATCCACGTTTGTCACATTTGAGGCAAAAACTTAGACTCTACAAAAACAT
TTGAGGAAAAAGATTCTGAAGGAGAAG
Found at i:3354643 original size:633 final size:635
Alignment explanation
Indices: 3353764--3355005 Score: 1763
Period size: 633 Copynumber: 2.0 Consensus size: 635
3353754 TTCGATGTAA
* ** * *
3353764 AAGAAAATCATTAATATCGTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCATAAAATG
1 AAGAAAATCATCAATATCGTTATCCTAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAATG
* * ** * * **
3353829 AATGAAGATCATTTCTAGAATCCATGTTCGTCTCATTTTGAGGCATTAAGTCAGACTTTGTAAAA
66 AATGAAGATCACTACTAGAATCCATGTTCGTCTCATTTTGAGGCACGAACTCAGACTCTACAAAA
* * * * *
3353894 ATTGGTGGGAAGAAAGCCTTTATTAAGAAGCCGAAGCATCAATATCGTCTATCCTAATGGGAAGA
131 ATTGGTGGGAAGAAAGCCTTTAATAAGAAGCCAAAGCATCAATATCGTCTATCCAAATGAGAAAA
* * * *
3353959 CTTTGTTTATGGTGCCTAGTCTAGAAAAGAATGAGGATTAGTATCACTATTCATATTTGTCTCCT
196 CTATGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATCACTATTCATATTTGTCTCCT
* ** * * * * *
3354024 TTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGACAAGCATTTCTTGCTACACCAAAT
261 TTGAGAGACAAACTTTAATTCTATCAAAAAAGGTAGAAAGAAAAGCATTTCTTGCGACACCAAAT
* * *
3354089 CATCAATGTCATGTATCCTAAATAAGGGAATGTGTTTTTGGTTCTCAATCTTGAAAAGAATGGAA
326 CATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAA
* * *
3354154 ACTTTTACAAGAATGGATGCTAGTCTTATTTATGGGATGAACTTCAACTTTAAGGAAAATAGGGC
391 ACCTTTACAAGAATGGATGCTAGTCTGATTTATGGGATAAACTTCAACTTTAAGGAAAATAGGGC
* * * * * *
3354219 AAGGAAAAGATTTCGATG-TAAAAAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT
456 AAGAAAAAGATTTCCATGAAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTT
3354283 TATAGGGTCTAATCACAAAATGAAT-AAGGATCACTACTAGAATCCACGTTTGTCACATTTGA-G
521 TATAGGGTCTAATCACAAAATGAATGAA-GATCACTACTAGAATCCACGTTTGTCACATTTGATG
* *
3354346 GCAAAAATTTAGACTTTACAAAAACATTTGAGGCAAAAGATTCTGAAGGAG
585 GCAAAAAGTTACACTTTACAAAAACATTTGAGGCAAAAGATTCTGAAGGAG
*
3354397 AAGAAAATCATCAATATCGTTTATCCTAATGAAAAGAATGTGTTTGTAGTGTCTAATCACAAAAT
1 AAGAAAATCATCAATATCG-TTATCCTAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAAT
* * *
3354462 GAATGAGGATCACTACTAGAATCCATGTTTGTCTCA-TTTGAGGCACGAACTTAGACTCTACAAA
65 GAATGAAGATCACTACTAGAATCCATGTTCGTCTCATTTTGAGGCACGAACTCAGACTCTACAAA
** * *
3354526 AATTGGTGGGAAGAAAGCCTTTAATGTGAAGCCAAAGCATTAATATCGTGTATCCAAATGAGAAA
130 AATTGGTGGGAAGAAAGCCTTTAATAAGAAGCCAAAGCATCAATATCGTCTATCCAAATGAGAAA
* *
3354591 ACTATGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCC
195 ACTATGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATCACTATTCATATTTGTCTCC
3354656 TTTGAGAGACAAACTTTAATTCTATCAAAAAAGGTAGAAAGAAAAGCATTTCTTGCGACACCAAA
260 TTTGAGAGACAAACTTTAATTCTATCAAAAAAGGTAGAAAGAAAAGCATTTCTTGCGACACCAAA
** * *
3354721 TCATCTTTGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCTATCATGAAAAGAATGTA
325 TCATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGA
* ****
3354786 GACCTTTACAAGAATGGATGCTAGTCTGATTTATGGGATAAACTTTGGTTTTAAGGAAAATAGGG
390 AACCTTTACAAGAATGGATGCTAGTCTGATTTATGGGATAAACTTCAACTTTAAGGAAAATAGGG
* * *
3354851 CAAGAAAAAGATTTCCATGCAAAAAAAAAATCATTAGTATCATTTATCCTAATAAGGAGAAAGTT
455 CAAGAAAAAGATTTCCATG-AAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTG
* * * * * *
3354916 TTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTAT
519 TTTATAGGGTCTAATCACAAAATGAATGAAGATCACTACTAGAATCCACGTTTGTCACATTTGAT
* *
3354981 GGCATAAAGTTACACTTTATAAAAA
584 GGCAAAAAGTTACACTTTACAAAAA
3355006 TTGGTGGGAA
Statistics
Matches: 530, Mismatches: 74, Indels: 7
0.87 0.12 0.01
Matches are distributed among these distances:
633 343 0.65
634 72 0.14
635 92 0.17
636 23 0.04
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (635 bp):
AAGAAAATCATCAATATCGTTATCCTAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAATG
AATGAAGATCACTACTAGAATCCATGTTCGTCTCATTTTGAGGCACGAACTCAGACTCTACAAAA
ATTGGTGGGAAGAAAGCCTTTAATAAGAAGCCAAAGCATCAATATCGTCTATCCAAATGAGAAAA
CTATGTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATCACTATTCATATTTGTCTCCT
TTGAGAGACAAACTTTAATTCTATCAAAAAAGGTAGAAAGAAAAGCATTTCTTGCGACACCAAAT
CATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCATGAAAAGAATGGAA
ACCTTTACAAGAATGGATGCTAGTCTGATTTATGGGATAAACTTCAACTTTAAGGAAAATAGGGC
AAGAAAAAGATTTCCATGAAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTGTT
TATAGGGTCTAATCACAAAATGAATGAAGATCACTACTAGAATCCACGTTTGTCACATTTGATGG
CAAAAAGTTACACTTTACAAAAACATTTGAGGCAAAAGATTCTGAAGGAG
Found at i:3355360 original size:49 final size:49
Alignment explanation
Indices: 3355265--3355362 Score: 124
Period size: 49 Copynumber: 2.0 Consensus size: 49
3355255 AAGAATGGAG
* * * *
3355265 ACTTTTACGAGAATTGATGTTAGTCTTATTTATAGGATGAAGTTTGATT
1 ACTTTTAAGAGAATTGATGCTAGTCTTATTTATAGGATAAACTTTGATT
* * * *
3355314 ACTTTTAAGAGAATTTATGCTAGTGTTATTTATGGGTTAAACTTTGATT
1 ACTTTTAAGAGAATTGATGCTAGTCTTATTTATAGGATAAACTTTGATT
3355363 TTAAGGAAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.29, C:0.06, G:0.19, T:0.46
Consensus pattern (49 bp):
ACTTTTAAGAGAATTGATGCTAGTCTTATTTATAGGATAAACTTTGATT
Found at i:3355721 original size:525 final size:527
Alignment explanation
Indices: 3354803--3355830 Score: 1369
Period size: 525 Copynumber: 2.0 Consensus size: 527
3354793 ACAAGAATGG
*
3354803 ATGCTAGTCTGATTTATGGGATAAACTTTGGTTTTAAGGAAAATAGGGCAAGAAAAAGATTTCCA
1 ATGCTAGTCTGATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAGAAAAAGATTTCCA
* * * * *
3354868 TGCAAAAAAAAAATCATTAGTATCATTTATCCTAATAAGGAGAAAGTTTTTATAGTGTCTAATCA
66 AGCAAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTTTATATAGTGTCAAATCA
* * * * *
3354933 CAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTATGGCATAAAGTTACACTT
131 CAAAATGAATCAAGATCATTTCTAGAACCCATGTTTGTCTCATTTGATGGCAGAAACTTACACTT
* ** * *
3354998 TATAAAAATTGGTGGGAAAAAAGCCTTCCTTGAGATGCCAAAGCATTAATATCATCTATCCTAAT
196 TACAAAAATTGGTGGGAAAAAAGCCTTCCTTGAGAAACCAAAGCATCAATATCATCTATCCTAAG
* * * *
3355063 GAGAAGACTTTGTTTATGGTGGCAAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
261 GAGAAGACTATGTTTATGGAGACAAATCCTGAAAAGAATGGGGATTAGCATGACTATTCATGTTT
* * * ** * *
3355128 GTCTCTTTTGAGGGTTGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
326 GTCTCCTTTGAGGGTTGAACATTGATTCTACCAAAAACAGTGGAAAGAAAAGATTTCCTTGCGAC
* *
3355193 ACCAAATCATCAATGTCATGTATCCTAAAGAAAGGAATA-TGTTTTTGGTTCCT-AATCTTGAAA
391 ACCAAATCATCAATGTCATGTATCCTAAAGAAAGGAA-AGTGTTTTAGGTT-CTAAATCTGGAAA
* * *
3355256 AGAATGGAGACTT-TTACGAGAATTGATGTTAGTCTTATTTATAGGATGAAGTTTGATTACTTTT
454 AGAATGGAGA-TTGTTACAAGAATCGATGCTAGTCTTATTTATAGGATGAAGTTTGATTACTTTT
3355320 AAGAGAATTT
518 AAGAGAATTT
* * *
3355330 ATGCTAGTGTTATTTATGGGTTAAACTTTGATTTTAAGGAAAATAGGGCAA-AGAAAAGATTTCC
1 ATGCTAGTCTGATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAGA-AAAAGATTTCC
* * * *
3355394 AAG-TAAAATAAAATCATCAATAT-AGTTTATCCTAATGAGGAGAATGTTTATATAGTGTCAAAT
65 AAGCAAAAAAAAAATCATCAATATCA-TTTATCCTAATAAGGAGAAAGTTTATATAGTGTCAAAT
* *
3355457 CACAAAATGAA-CAAGGATC-TTTACTAGAACCCATGTTTGTCTCATTTGA-GGCAGGAACTTAG
129 CACAAAATGAATCAA-GATCATTT-CTAGAACCCATGTTTGTCTCATTTGATGGCAGAAACTTAC
* * * *
3355519 ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-ACGAAACCAAAGCATCAATATCGTGTATC
192 ACTTTACAAAAATTGGTGGGAAAAAAGCCTTCCTTGA-GAAACCAAAGCATCAATATCATCTATC
* * * ** *
3355583 CTTAGGAGAAGACTATGTTTATTGAGACTAATCCTG-AAAGAATTTGGATTGGCATGACTATTCA
256 CTAAGGAGAAGACTATGTTTATGGAGACAAATCCTGAAAAGAATGGGGATTAGCATGACTATTCA
*
3355647 TTTTTGTCTCCTTTGA-GGTATGAACATTGATTCTACCAAAAACCAGTGGAAAGAAAAGATTTCC
321 TGTTTGTCTCCTTTGAGGGT-TGAACATTGATTCTACCAAAAA-CAGTGGAAAGAAAAGATTTCC
* * ** *
3355711 TTGTGACACCAAATTATCAATGTCATGTATCCTACTGAAGGGAAAGTGTTTTAGGTTCTAAATCT
384 TTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAAGGAAAGTGTTTTAGGTTCTAAATCT
3355776 GGAAAAGAATGGAGATTGTTACAAGAATCGATGCTAGTCTTATTTATAGGATGAA
449 GGAAAAGAATGGAGATTGTTACAAGAATCGATGCTAGTCTTATTTATAGGATGAA
3355831 CTTTCACTTT
Statistics
Matches: 434, Mismatches: 57, Indels: 22
0.85 0.11 0.04
Matches are distributed among these distances:
523 3 0.01
524 64 0.15
525 217 0.50
526 90 0.21
527 60 0.14
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (527 bp):
ATGCTAGTCTGATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAGAAAAAGATTTCCA
AGCAAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAAGTTTATATAGTGTCAAATCA
CAAAATGAATCAAGATCATTTCTAGAACCCATGTTTGTCTCATTTGATGGCAGAAACTTACACTT
TACAAAAATTGGTGGGAAAAAAGCCTTCCTTGAGAAACCAAAGCATCAATATCATCTATCCTAAG
GAGAAGACTATGTTTATGGAGACAAATCCTGAAAAGAATGGGGATTAGCATGACTATTCATGTTT
GTCTCCTTTGAGGGTTGAACATTGATTCTACCAAAAACAGTGGAAAGAAAAGATTTCCTTGCGAC
ACCAAATCATCAATGTCATGTATCCTAAAGAAAGGAAAGTGTTTTAGGTTCTAAATCTGGAAAAG
AATGGAGATTGTTACAAGAATCGATGCTAGTCTTATTTATAGGATGAAGTTTGATTACTTTTAAG
AGAATTT
Found at i:3357259 original size:49 final size:49
Alignment explanation
Indices: 3357187--3357284 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
3357177 AAGAATGGAG
**
3357187 ACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATT
1 ACTTTTACGAGAATTGATGCTAGTCTTATTTACAGGATGAAGTTTGATT
3357236 ACTTTTACGAGAATTGATGCTAGTCTTATTTACAGGATGAAGTTTGATT
1 ACTTTTACGAGAATTGATGCTAGTCTTATTTACAGGATGAAGTTTGATT
3357285 TTGAGGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.28, C:0.09, G:0.21, T:0.42
Consensus pattern (49 bp):
ACTTTTACGAGAATTGATGCTAGTCTTATTTACAGGATGAAGTTTGATT
Found at i:3358653 original size:79 final size:79
Alignment explanation
Indices: 3358553--3358754 Score: 219
Period size: 79 Copynumber: 2.6 Consensus size: 79
3358543 AATAACAGGG
* * * * *
3358553 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-ATTTA
*
3358616 GGAAAAAAAATCGGGA
64 GGAAAAAAAACCGGGA
* * *
3358632 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATTCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGG
* * * *
3358697 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * **
3358711 TTGGAGTATCCCCTCGGAAGCAACGGGGTTGGAGTATCCCCGAT
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGAT
3358755 GAAATAACGA
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 7 0.07
79 95 0.93
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTAGG
AAAAAAAACCGGGA
Found at i:3358763 original size:28 final size:28
Alignment explanation
Indices: 3358706--3358782 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
3358696 GGAATAAAGC
*** *
3358706 CGGGGTTGGAGTATCCCCTCGGAAGCAA
1 CGGGGTTGGAGTATCCCCGATGAAACAA
*
3358734 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAACAA
* * *
3358762 CGAGGTTGGAGCATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
3358783 TGTGAAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.34, T:0.21
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAACAA
Found at i:3358830 original size:52 final size:52
Alignment explanation
Indices: 3358766--3358894 Score: 149
Period size: 51 Copynumber: 2.5 Consensus size: 52
3358756 AAATAACGAG
* *
3358766 GTTGGAGCATCCTCGATTGTGA-AAAATTGGTAT-TTTTGGAAA-TAAAATCGGA
1 GTTGGAGTATCCTCGATTGTGAGAAAATT--AATGTTTT-GAAAGTAAAATCGGA
*
3358818 GTTGGAGTATCCTCGATTAT-AGAAAATTAATGTTTTGAAAGTAAAATCGGA
1 GTTGGAGTATCCTCGATTGTGAGAAAATTAATGTTTTGAAAGTAAAATCGGA
* *
3358869 GTTGGAATATCCTCTATTGTGGAGAA
1 GTTGGAGTATCCTCGATTGT-GAGAA
3358895 TTGAGCAACT
Statistics
Matches: 66, Mismatches: 6, Indels: 9
0.81 0.07 0.11
Matches are distributed among these distances:
50 6 0.09
51 32 0.48
52 24 0.36
53 4 0.06
ACGTcount: A:0.33, C:0.09, G:0.24, T:0.33
Consensus pattern (52 bp):
GTTGGAGTATCCTCGATTGTGAGAAAATTAATGTTTTGAAAGTAAAATCGGA
Found at i:3361262 original size:13 final size:13
Alignment explanation
Indices: 3361244--3361269 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3361234 ACAAAGATCC
3361244 ATGTATCGATACA
1 ATGTATCGATACA
3361257 ATGTATCGATACA
1 ATGTATCGATACA
3361270 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3361265 original size:33 final size:33
Alignment explanation
Indices: 3361223--3361289 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
3361213 AAAATTTCCA
***
3361223 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
3361256 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3361289 A
1 A
3361290 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3361333 original size:19 final size:18
Alignment explanation
Indices: 3361309--3361376 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3361299 CAGTAGCTAA
3361309 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3361328 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3361343 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3361360 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3361377 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3361349 original size:13 final size:13
Alignment explanation
Indices: 3361331--3361355 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3361321 ACAATACTTA
3361331 TGTATCGATACAT
1 TGTATCGATACAT
3361344 TGTATCGATACA
1 TGTATCGATACA
3361356 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3361353 original size:32 final size:32
Alignment explanation
Indices: 3361312--3361374 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3361302 TAGCTAATTA
*
3361312 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3361344 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3361375 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3361455 original size:20 final size:20
Alignment explanation
Indices: 3361412--3361472 Score: 106
Period size: 20 Copynumber: 3.0 Consensus size: 20
3361402 GTTGGGACCC
3361412 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGT-GAA
3361433 TGTATCGATACATTTGTGAA
1 TGTATCGATACATTTGTGAA
3361453 TGTATCGATACATTTG-GAA
1 TGTATCGATACATTTGTGAA
3361472 T
1 T
3361473 TTTTTTTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.10
20 19 0.47
21 17 0.43
ACGTcount: A:0.31, C:0.10, G:0.20, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATTTGTGAA
Found at i:3362169 original size:55 final size:55
Alignment explanation
Indices: 3362085--3363012 Score: 1205
Period size: 55 Copynumber: 16.4 Consensus size: 55
3362075 ATAAACTGTA
* * * *
3362085 TCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
**
3362140 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* ** **
3362195 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* *
3362256 TCCTGCTCTTTGAGGATTGAAAAATGCCACCAACCTGTGTGGGC-TTGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAGGTG
*
3362311 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** **
3362366 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* *
3362427 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3362482 TCCTGCTCTTTGAGGATTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** ***
3362537 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAACA
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG------GTG
* *
3362599 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3362654 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** **
3362709 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* *
3362770 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
** *
3362825 TCCTGCTCTTTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
3362880 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3362935 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
3362990 TCCTGCTCTTTGGGGACTGAAAA
1 TCCTGCTCTTTGAGGACTGAAAA
3363013 GCGGAAGGAG
Statistics
Matches: 773, Mismatches: 71, Indels: 58
0.86 0.08 0.06
Matches are distributed among these distances:
54 2 0.00
55 555 0.72
56 20 0.03
57 2 0.00
60 16 0.02
61 134 0.17
62 44 0.06
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:3362219 original size:26 final size:26
Alignment explanation
Indices: 3362131--3362220 Score: 67
Period size: 26 Copynumber: 3.3 Consensus size: 26
3362121 GTGTGGGCTT
* *
3362131 TGAAAGGCGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTGCTCTTTGGGGAC
** *
3362157 TGAAAGGTG-CCACCAACTTGTGTGGG-C
1 TGAAAGGTGTCCTGC-TCTT-TG-GGGAC
*
3362184 TTTAAGAGGTGTCCTGCTCTTTGGGGAC
1 -TGAA-AGGTGTCCTGCTCTTTGGGGAC
3362212 TGAAAGGTG
1 TGAAAGGTG
3362221 CCACCAACTT
Statistics
Matches: 47, Mismatches: 10, Indels: 14
0.66 0.14 0.20
Matches are distributed among these distances:
25 3 0.06
26 16 0.34
27 9 0.19
28 8 0.17
29 8 0.17
30 3 0.06
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (26 bp):
TGAAAGGTGTCCTGCTCTTTGGGGAC
Found at i:3362244 original size:29 final size:29
Alignment explanation
Indices: 3362157--3362245 Score: 82
Period size: 29 Copynumber: 3.2 Consensus size: 29
3362147 CTTTGAGGAC
3362157 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
** *
3362186 T-AAGAGGTGTCCTGC-TCTT-TG-GGGAC--
1 TGAA-AGGTG-CCACCAACTTGTGTGGG-CTT
3362212 TGAAAGGTGCCACCAACTTGTGTGGGCTT
1 TGAAAGGTGCCACCAACTTGTGTGGGCTT
3362241 TGAAA
1 TGAAA
3362246 AGAAAAAGCA
Statistics
Matches: 45, Mismatches: 6, Indels: 18
0.65 0.09 0.26
Matches are distributed among these distances:
25 3 0.07
26 9 0.20
27 8 0.18
28 8 0.18
29 14 0.31
30 3 0.07
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.28
Consensus pattern (29 bp):
TGAAAGGTGCCACCAACTTGTGTGGGCTT
Found at i:3362298 original size:171 final size:171
Alignment explanation
Indices: 3362084--3363012 Score: 1531
Period size: 171 Copynumber: 5.5 Consensus size: 171
3362074 AATAAACTGT
* * * *
3362084 ATCCTGCTCATTGAGGAGT-AAAAAGTGCCACCAA-CTCGTGTGGGCTTTGAAAGGCGTCCTGCT
1 ATCCTGCTCTTTGAGGACTGAAAAA-TGCCACCAACCT-GTGTGGGCTTTAAAAGGTGTCCTGCT
* *
3362147 CTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCTTTGGGG
64 CTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCTTTGAGG
3362210 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
127 ACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* *
3362255 ATCCTGCTCTTTGAGGATTGAAAAATGCCACCAACCTGTGTGGGCTTGAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
3362320 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
3362385 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
3362426 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
* *
3362491 TTGAGGATTGAAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
*
3362556 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAAC
131 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAAAGC
3362598 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
3362663 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
3362728 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
131 AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
3362769 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
**
3362834 TTGAGGGTTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
66 TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACT-
* * *
3362899 GAAA-ATGCCACCAACTTATGTGGGCTTTG-AAAG-----GT
130 GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
* * * *
3362934 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
*
3362999 TTGGGGACT-GAAAA
66 TTGAGGACTGGAAAA
3363013 GCGGAAGGAG
Statistics
Matches: 725, Mismatches: 27, Indels: 19
0.94 0.04 0.02
Matches are distributed among these distances:
164 5 0.01
165 68 0.09
170 4 0.01
171 463 0.64
172 185 0.26
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (171 bp):
ATCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCT
TTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
AAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGC
Found at i:3362488 original size:226 final size:218
Alignment explanation
Indices: 3362085--3363012 Score: 1176
Period size: 226 Copynumber: 4.1 Consensus size: 218
3362075 ATAAACTGTA
* * * *
3362085 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* *
3362150 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTGTCCTGCTCTTTGGGGACTGA
65 TGAGGACTGAAAGATGCCACCAACTTGTGTGGGCTTTAA-AGGTGTCCTGCTCTTTGAGGACTGA
** ** *
3362215 AAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAGGATTGAAAAA
129 AAAATGCCACCAACTTGTGTGGGCTTT-AAAAG-----GTGTCCTGCTCTTTGAGGACTGAAAAA
*
3362280 TGCCACCAACCTGTGTGGGC-TTGAAAAGGTG
188 TGCCACCAACTTGTGTGGGCTTTG-AAAGGTG
*
3362311 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACT-GAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
* **
3362376 TGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTGCTCTTTGAG
65 TGAGGACTGAAAGATGCCACCAACTTGTGTGGGCTTT--AAAG-----GTGTCCTGCTCTTTGAG
* *
3362441 GACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGATTGAAAAA
123 GACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAAA
3362506 TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
188 TGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* * *
3362537 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAAACATCC
1 TCCTGCTCTTTGAGGACTGAAA-ATGCCACCAACTTGTGTGGGCTTTG-AAAG------GCGTCC
* *
3362602 TGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGA
58 TGCTCTTTGAGGACTGAAAGATGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTGCTCTTTGA
* * *
3362667 GGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGAAAG
122 GGACTGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAA
* **
3362732 GTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
187 ATGCCACCAACTTGTGTGGGCTTTG-AAAG-----GTG
* * *
3362770 TCCTGCTCTTTGAGGACTGAAAAATGCCACCAACCTGTGTGGGCTTTAAAAGGTGTCCTGCTCTT
1 TCCTGCTCTTTGAGGACTG-AAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTT
**
3362835 TGAGGGTTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTG
65 TGAGGACT-GAAAGATGCCACCAACTTGTGTGGGCTTT-AAAGGTGTCCTGCTCTTTGAGGACTG
* * * *
3362899 GAAAATGCCACCAACTTATGTGGGCTTTGAAAGGTGTCCTGCTCTTTGAGGACTGGAAAATGCCA
128 AAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCA
3362964 CCAACTTGTGTGGGCTTTGAAAGGTG
193 CCAACTTGTGTGGGCTTTGAAAGGTG
*
3362990 TCCTGCTCTTTGGGGACTGAAAA
1 TCCTGCTCTTTGAGGACTGAAAA
3363013 GCGGAAGGAG
Statistics
Matches: 629, Mismatches: 48, Indels: 57
0.86 0.07 0.08
Matches are distributed among these distances:
219 4 0.01
220 19 0.03
225 8 0.01
226 330 0.52
227 115 0.18
228 6 0.01
231 5 0.01
232 53 0.08
233 86 0.14
234 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (218 bp):
TCCTGCTCTTTGAGGACTGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTT
GAGGACTGAAAGATGCCACCAACTTGTGTGGGCTTTAAAGGTGTCCTGCTCTTTGAGGACTGAAA
AATGCCACCAACTTGTGTGGGCTTTAAAAGGTGTCCTGCTCTTTGAGGACTGAAAAATGCCACCA
ACTTGTGTGGGCTTTGAAAGGTG
Found at i:3362902 original size:27 final size:27
Alignment explanation
Indices: 3362872--3362957 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
3362862 TGTGGGCTTT
3362872 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
3362899 GAAA-ATG-CCACCAACTTATGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
3362927 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
3362954 GAAA
1 GAAA
3362958 ATGCCACCAA
Statistics
Matches: 40, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.12
27 14 0.35
28 10 0.25
29 5 0.12
30 3 0.08
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:3364047 original size:10 final size:11
Alignment explanation
Indices: 3364017--3364046 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
3364007 TTTTTTGTTT
*
3364017 TTTTTTTTTCC
1 TTTTTTTTTGC
3364028 TTTTTTTTTGC
1 TTTTTTTTTGC
3364039 TTTTTTTT
1 TTTTTTTT
3364047 GAAGAGAAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (11 bp):
TTTTTTTTTGC
Found at i:3376473 original size:80 final size:79
Alignment explanation
Indices: 3376343--3376542 Score: 206
Period size: 79 Copynumber: 2.5 Consensus size: 79
3376333 AATAACAGGG
* * * ** * *
3376343 TTGGAGTGTTCCCTT-GAAAATAACGGGGCTGGAGTATCCTCGGTTGTGAGAAATCGATGA-TTA
1 TTGGAGT-ATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTA
*
3376406 GGAAAAAAAAATCGGGA
64 GG-AAAAAAAACCGGGA
*
3376423 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGG
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGG
* * * *
3376488 GAATAAAGCCGGGG
66 AAAAAAAACCGGGA
* * **
3376502 TTGGAGTATCCCCTCGGAAGCAACGGGGTTGGAGTATCCCC
1 TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCC
3376543 GATGAAATAA
Statistics
Matches: 101, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
79 53 0.52
80 48 0.48
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (79 bp):
TTGGAGTATCCCTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTAGG
AAAAAAAACCGGGA
Found at i:3376554 original size:28 final size:28
Alignment explanation
Indices: 3376497--3376573 Score: 82
Period size: 28 Copynumber: 2.8 Consensus size: 28
3376487 GGAATAAAGC
*** *
3376497 CGGGGTTGGAGTATCCCCTCGGAAGCAA
1 CGGGGTTGGAGTATCCCCGATGAAACAA
*
3376525 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAACAA
* * *
3376553 CGAGGTTGGAGCATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
3376574 TGTGAAAAAT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.23, C:0.22, G:0.34, T:0.21
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAACAA
Found at i:3376626 original size:52 final size:52
Alignment explanation
Indices: 3376557--3376685 Score: 140
Period size: 51 Copynumber: 2.5 Consensus size: 52
3376547 AAATAACGAG
* *
3376557 GTTGGAGCATCCTCGATTGTGA-AAAATTGGTAT-TTTTGGAAA-TAAAATCGGA
1 GTTGGAGTATCCTCGATTGTGAGAAAATT--AATGTTTT-GAAAGTAAAATCGGA
* *
3376609 GTTGGAGTATCCCCGATTAT-AGAAAATTAATGTTTTGAAAGTAAAATCGGA
1 GTTGGAGTATCCTCGATTGTGAGAAAATTAATGTTTTGAAAGTAAAATCGGA
* *
3376660 GTTGGAATATCCTCTATTGTGGAGAA
1 GTTGGAGTATCCTCGATTGT-GAGAA
3376686 TTGAGCAACT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
50 6 0.09
51 31 0.48
52 23 0.36
53 4 0.06
ACGTcount: A:0.33, C:0.10, G:0.24, T:0.33
Consensus pattern (52 bp):
GTTGGAGTATCCTCGATTGTGAGAAAATTAATGTTTTGAAAGTAAAATCGGA
Found at i:3379053 original size:13 final size:13
Alignment explanation
Indices: 3379035--3379060 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3379025 ACAAAGATCC
3379035 ATGTATCGATACA
1 ATGTATCGATACA
3379048 ATGTATCGATACA
1 ATGTATCGATACA
3379061 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3379072 original size:33 final size:33
Alignment explanation
Indices: 3379014--3379080 Score: 89
Period size: 33 Copynumber: 2.0 Consensus size: 33
3379004 AAAATTTCCA
***
3379014 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
* *
3379047 AATGTATCGATACACAGAAAAATGTATTGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
3379080 A
1 A
3379081 TTTCCTTGGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.43, C:0.15, G:0.15, T:0.27
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:3379124 original size:19 final size:18
Alignment explanation
Indices: 3379100--3379167 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
3379090 CAGTAGCTAA
3379100 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
3379119 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
3379134 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
3379151 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
3379168 TCGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:3379140 original size:13 final size:13
Alignment explanation
Indices: 3379122--3379146 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3379112 ACAATACTTA
3379122 TGTATCGATACAT
1 TGTATCGATACAT
3379135 TGTATCGATACA
1 TGTATCGATACA
3379147 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3379141 original size:32 final size:32
Alignment explanation
Indices: 3379103--3379165 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
3379093 TAGCTAATTA
*
3379103 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
3379135 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
3379166 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:3379229 original size:21 final size:21
Alignment explanation
Indices: 3379203--3379280 Score: 140
Period size: 21 Copynumber: 3.8 Consensus size: 21
3379193 GTTGGGACCC
3379203 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTAGAA
3379224 TGTATCGATACATTTGTAGAA
1 TGTATCGATACATTTGTAGAA
3379245 TGTATCGATACATTTGT-GAA
1 TGTATCGATACATTTGTAGAA
*
3379265 TGTATCGATATATTTG
1 TGTATCGATACATTTG
3379281 GAATTTTTTT
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
20 18 0.32
21 38 0.68
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (21 bp):
TGTATCGATACATTTGTAGAA
Found at i:3381198 original size:477 final size:476
Alignment explanation
Indices: 3379626--3381774 Score: 2787
Period size: 477 Copynumber: 4.5 Consensus size: 476
3379616 TCCCAATGAG
* *
3379626 GAGAATGTTTTTAGAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
* * * **
3379691 TCATTTTGTGGCATGAAGTTACACTTTAAAAAAATTGGCAGGATGAAAGCCTTTATTGAGAAGCC
66 TCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGAGAAGCC
* * * * * *
3379756 AAAGCATCAGTACCATCTATCCTAA-AGAGAAGAATTTGTTTATGGTGGCTAATCCAGAAAAGAA
131 AAAGCATCAATATCGTATATCCTAATA-AGAAGACTTTGTTTATGGTGCCTAATCCA-AAAAGAA
* * * * *
3379820 TGAGGATTAGTTTGACTATTCATGTTTGTCTCCCTTAAGGGACGAACATTGATTCTCTAAAAAAT
194 TGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACATTGATTCTATAAAAAAC
* * * * * *
3379885 GGTGAAAAGAAAAGCTTTTCTTGCAACATCAAATCATCAATGCCATGTATCCTAAATAAGGGAAT
259 GATGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAAT
* * *
3379950 GTGTTTTTCGTTCCCAATCTTGAAAAGAATAGAGACTTTTATGAGAATTGATGCTTGTCTTATTT
324 GTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTTAATGAGAATTGATGCTAGTCTTATTT
* * * * ** * *
3380015 ATGGGATGAATTTTGGTTTTAAAGAAAATAGGGTAAGGAAAAGATTTTGATTCAAAAGAAAATCG
389 ATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAAAGAAAATCA
*
3380080 TCAATATCGTTTATCCCAATGAAA
454 TCAATATCGTTTATCCTAAT-AAA
* * *
3380104 -AGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATCACTACTAGAATCCATGTCTT-T
1 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGT-TTGT
* * * ** *
3380167 CTCA-TTTGAGGAACGAACTTAGACTTTACAAAAATTGGTAAGATGAAAACCTTTACTT-AGAAG
65 CTCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTA-TTGAGAAG
*
3380230 CTAAAGCATCAATATCGTATATCCTAATGAA-AAGACTTTGTTTATGGTGCCTAATCCAAAAAAG
129 CCAAAGCATCAATATCGTATATCCTAAT-AAGAAGACTTTGTTTATGGTGCCTAATCC-AAAAAG
* * *
3380294 AATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGGCGAA-TTTGATTCTATCAAAA
192 AATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACATTGATTCTATAAAAA
* * * *
3380358 ATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCAATGTCATGTATCTTAAAGAAGGGA
257 ACGATGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGA
* * * * *
3380423 ATGTGTTTTTGGATCTCAATCTTGAAAAGAATAGAGACCTCAATGAGAATGGATGCTAGTCTTAT
322 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTTAATGAGAATTGATGCTAGTCTTAT
* *
3380488 TTATGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAAT
387 TTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAAAGAAAAT
* *
3380553 CATCAAATATCGTTTATCCTAATGAG
452 CATC-AATATCGTTTATCCTAATAAA
*
3380579 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
* *
3380644 TGATTTTGAGGCATGGAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGAGAAGCC
66 TCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGAGAAGCC
* * *
3380709 AAAGCTTCAATATCGTCTACCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAAAAAGGAAT
131 AAAGCATCAATATCGTATATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAAAAA-GAAT
* * * * *
3380774 GAGGATTTGTTTGACTATTGATGTTTGTCTCCTTTGAGGGACGAACTTTGATTTTATAAAAAACG
195 GAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACATTGATTCTATAAAAAACG
* * *
3380839 ATGGAAAGAAAAGCTTTTTTTTGCGACACCAAATTATCAATGTCATGTATCCTAAAGAACGGAAT
260 ATGGAAAGAAAAGC-TTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAAT
** * * * *
3380904 GTGTTTTTGGTTCCCAAAGTTGAAAAGAATGGAGACTTTTATGAGAACTGATGTTAGTCTTATTT
324 GTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTTAATGAGAATTGATGCTAGTCTTATTT
* * *
3380969 ATGGGATGAAGTTTGATTTTAGGGAAAATAGGGTAAGGAAAAGATTCTC-ATGCAAAAGAAAATC
389 ATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATT-TCAATGCAAAAGAAAATC
*
3381033 ATCAATATCATTTATCCTAATAAA
453 ATCAATATCGTTTATCCTAATAAA
* * * ** * * *
3381057 GAGAATGTGTTTATGGTGTCTAATTACAAAATAAATGGGGATCACTACTAGAATCCATGTTTATC
1 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
* * * * * *
3381122 T-AATTTGAAGCATTAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-ACGAAGC
66 TCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGA-GAAGC
* * * * *
3381185 CAAAGCTTCAATATCGTGATAT-CTAATGAGAAGCCTTTATTTATGGTGCCTAATCCTGAAAAGA
130 CAAAGCATCAATATCGT-ATATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCC-AAAAAGA
* * * *
3381249 ATGAGTACTT-GTATGACTATTCATGTTTGTCTCCTTTTAGGGACTAACATTGATTCAATAAAAA
193 ATGAGGA-TTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACATTGATTCTATAAAAA
* * **
3381313 AC-AGTGGAAAGAAAAGCTTTTCTTGCGACACTAAAGCATCAATGTCATGTATCCTAATTAAGGG
257 ACGA-TGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGG
* * **
3381377 AATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACAGTAATGAGAATTGATGCTAGTCTTA
321 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTTAATGAGAATTGATGCTAGTCTTA
*
3381442 TTTATGGGATGAACTTTGATTTTAAGGAAATTAGGGCAA-GAGAAAGATTTCAATGCAAAAGAAA
386 TTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGA-AAAGATTTCAATGCAAAAGAAA
* * * *
3381506 ATCATTAGTATCGTTTATCCTAATGAG
450 ATCATCAATATCGTTTATCCTAATAAA
* * *
3381533 GAAAATGTTTTTATAGTGTTTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
1 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
* * *
3381598 TCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCATTATTGAGAAGCC
66 TCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGAGAAGCC
* * * * * *
3381663 AAAGCATCAATATCATGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCTAGAAAAGAAT
131 AAAGCATCAATATCGTATATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCA-AAAAGAAT
* * * * *
3381728 GTGGATTAGTATGACTTTTCATGTTTGTCTCTTTTTAGGGACAAACA
195 GAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACA
3381775 ATGGCATGCC
Statistics
Matches: 1457, Mismatches: 187, Indels: 55
0.86 0.11 0.03
Matches are distributed among these distances:
475 196 0.13
476 462 0.32
477 522 0.36
478 116 0.08
479 159 0.11
480 2 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (476 bp):
GAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
TCATTTTGAGGCATGAAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGAGAAGCC
AAAGCATCAATATCGTATATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAAAAAGAATG
AGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACATTGATTCTATAAAAAACGA
TGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGT
GTTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTTTAATGAGAATTGATGCTAGTCTTATTTAT
GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAAAGAAAATCATC
AATATCGTTTATCCTAATAAA
Found at i:3381520 original size:954 final size:953
Alignment explanation
Indices: 3379620--3381774 Score: 3137
Period size: 954 Copynumber: 2.3 Consensus size: 953
3379610 TTTGGTTCCC
*
3379620 AATGAGGAGAATGTTTTTAGAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
1 AATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
* * **
3379685 TTTGTCTCATTTTGTGGCATGAAGTTACACTTTAAAAAAATTGGCAGGATGAAAGCCTTTATTGA
66 TTTGTCTCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGATGAAAGCCTTTATTGA
* * * *
3379750 GAAGCCAAAGCATCAGTACCATCTATCCTAA-AGAGAAGAATTTGTTTATGGTGGCTAATCCAGA
131 GAAGCCAAAGCATCAATATCATCTATCCTAATA-AGAAGACTTTGTTTATGGTGCCTAATCCAGA
* *
3379814 AAAGAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCCTTAAGGGACGAACATTGATTCTCTA
195 AAAGAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCTTTAAGGGACGAACATTGATTCTATA
* * * *
3379879 AAAAATGGTGAAAAGAAAAGCTTTTCTTGCAACATCAAATCATCAATGCCATGTATCCTAAATAA
260 AAAAACGATGAAAAGAAAAGCTTTTCTTGCAACACCAAATCATCAATGCCATGTATCCTAAAGAA
* * *
3379944 GGGAATGTGTTTTTCGTTCCCAATCTTGAAAAGAATAGAGACTTTTATGAGAATTGATGCTTGTC
325 CGGAATGTGTTTTTCGTTCCCAAACTTGAAAAGAATAGAGACTTTTATGAGAACTGATGCTTGTC
* * * * *
3380009 TTATTTATGGGATGAATTTTGGTTTTAAAGAAAATAGGGTAAGGAAAAGATTTTGATTCAAAAGA
390 TTATTTATGGGATGAAGTTTGATTTTAAAGAAAATAGGGTAAGGAAAAGATTCTCATGCAAAAGA
* * *
3380074 AAATCGTCAATATCGTTTATCCCAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAATGAAT
455 AAATCATCAATATCATTTATCCCAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAATAAAT
* *
3380139 GAGGATCACTACTAGAATCCATGTCTTTCTCATTTGAGGAACGAACTTAGACTTTACAAAAATTG
520 GAGGATCACTACTAGAATCCATGTCTTTCTAATTTGAAGAACGAACTTAGACTTTACAAAAATTG
* *
3380204 GTAAGATGAAAACCTTTACTTAGAAGCTAAAGCATCAATATCGTATATCCTAATGAAAAGACTTT
585 GTAAGAAGAAAACCTTTACTTAGAAGCCAAAGCATCAATATCGTATATCCTAATGAAAAGACTTT
*
3380269 GTTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGA
650 ATTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGA
* * * * ** *
3380334 GGGGCGAATTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCA
715 GGGACGAAATTGATTCAATAAAAAACAGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCA
*
3380399 ATGTCATGTATCTTAAAGAAGGGAATGTGTTTTTGGATCTCAATCTTGAAAAGAATAGAGACCTC
780 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGATCTCAATCTTGAAAAGAATAGAGACCTC
3380464 AATGAGAATGGATGCTAGTCTTATTTATGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAGGA
845 AATGAGAATGGATGCTAGTCTTATTTATGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAGGA
*
3380529 AAAGATTTCGATGCAAAAGAAAATCATCAAATATCGTTTATCCT
910 AAAGATTTCAATGCAAAAGAAAATCATCAAATATCGTTTATCCT
* *
3380573 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
1 AATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
* * *
3380638 TTTGTCTGATTTTGAGGCATGGAGTTAGACTTTACAAAAATTGGTGGGATGAAAGCCTTTATTGA
66 TTTGTCTCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGATGAAAGCCTTTATTGA
* * *
3380703 GAAGCCAAAGCTTCAATATCGTCTACCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCA-AA
131 GAAGCCAAAGCATCAATATCATCTATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAGAA
* * * * *
3380767 AAGGAATGAGGATTTGTTTGACTATTGATGTTTGTCTCCTTTGAGGGACGAACTTTGATTTTATA
196 AA-GAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCTTTAAGGGACGAACATTGATTCTATA
* * * * *
3380832 AAAAACGATGGAAAGAAAAGCTTTTTTTTGCGACACCAAATTATCAATGTCATGTATCCTAAAGA
260 AAAAACGATGAAAAGAAAAGC-TTTTCTTGCAACACCAAATCATCAATGCCATGTATCCTAAAGA
* * *
3380897 ACGGAATGTGTTTTTGGTTCCCAAAGTTGAAAAGAATGGAGACTTTTATGAGAACTGATG-TTAG
324 ACGGAATGTGTTTTTCGTTCCCAAACTTGAAAAGAATAGAGACTTTTATGAGAACTGATGCTT-G
**
3380961 TCTTATTTATGGGATGAAGTTTGATTTTAGGGAAAATAGGGTAAGGAAAAGATTCTCATGCAAAA
388 TCTTATTTATGGGATGAAGTTTGATTTTAAAGAAAATAGGGTAAGGAAAAGATTCTCATGCAAAA
* * *
3381026 GAAAATCATCAATATCATTTATCCTAAT-AAAGAGAATGTGTTTATGGTGTCTAATTACAAAATA
453 GAAAATCATCAATATCATTTATCCCAATGAAA-AGAATGTGTTTATAGTGTCTAATCACAAAATA
* * **
3381090 AATGGGGATCACTACTAGAATCCATGT-TTATCTAATTTGAAGCATTAACTTAGACTTTACAAAA
517 AATGAGGATCACTACTAGAATCCATGTCTT-TCTAATTTGAAGAACGAACTTAGACTTTACAAAA
** * * *
3381154 ATTGGTGGGAAGAAAGCCTTT-CTTACGAAGCCAAAGCTTCAATATCGTGATAT-CTAATGAGAA
581 ATTGGTAAGAAGAAAACCTTTACTTA-GAAGCCAAAGCATCAATATCGT-ATATCCTAATGAAAA
* ** *
3381217 GCCTTTATTTATGGTGCCTAATCCTGAAAAGAATGAGTACTT-GTATGACTATTCATGTTTGTCT
644 GACTTTATTTATGGTGCCTAATCCAAAAAAGAATGAGGA-TTAGTATGACTATTCATGTTTGTCT
* * * *
3381281 CCTTTTAGGGACTAACATTGATTCAATAAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACTA
708 CCTTTGAGGGACGAA-ATTGATTCAATAAAAAACAGTGGAAAGAAAAGCATTTCTTGCGACACCA
** *
3381346 AAGCATCAATGTCATGTATCCTAATTAAGGGAATGTGTTTTTGGTTC-CTAATCTTGAAAAGAAT
772 AAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGATCTC-AATCTTGAAAAGAAT
* * * * *
3381410 GGAGACAGT-AATGAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAATT
836 AGAGAC-CTCAATGAGAATGGATGCTAGTCTTATTTATGGGATGAACTTTCATTTTAAGGAAAAT
* *
3381474 AGGGCAA-GAGAAAGATTTCAATGCAAAAGAAAATCAT-TAGTATCGTTTATCCT
900 AGGGCAAGGA-AAAGATTTCAATGCAAAAGAAAATCATCAAATATCGTTTATCCT
* *
3381527 AATGAGGAAAATGTTTTTATAGTGTTTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
1 AATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
* *
3381592 TTTGTCTCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGAAGAAAGCCATTATTGA
66 TTTGTCTCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGATGAAAGCCTTTATTGA
* * * * *
3381657 GAAGCCAAAGCATCAATATCATGTATCCTATTGAGAAGACTATGTTTATGGTGCCTAATCTAGAA
131 GAAGCCAAAGCATCAATATCATCTATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAGAA
* * * * * *
3381722 AAGAATGTGGATTAGTATGACTTTTCATGTTTGTCTCTTTTTAGGGACAAACA
196 AAGAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCTTTAAGGGACGAACA
3381775 ATGGCATGCC
Statistics
Matches: 1069, Mismatches: 119, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
952 4 0.00
953 257 0.24
954 608 0.57
955 199 0.19
956 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (953 bp):
AATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATG
TTTGTCTCATTTTGAGGCATGAAGTTAGACTTTAAAAAAATTGGTGGGATGAAAGCCTTTATTGA
GAAGCCAAAGCATCAATATCATCTATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCAGAA
AAGAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCTTTAAGGGACGAACATTGATTCTATAA
AAAACGATGAAAAGAAAAGCTTTTCTTGCAACACCAAATCATCAATGCCATGTATCCTAAAGAAC
GGAATGTGTTTTTCGTTCCCAAACTTGAAAAGAATAGAGACTTTTATGAGAACTGATGCTTGTCT
TATTTATGGGATGAAGTTTGATTTTAAAGAAAATAGGGTAAGGAAAAGATTCTCATGCAAAAGAA
AATCATCAATATCATTTATCCCAATGAAAAGAATGTGTTTATAGTGTCTAATCACAAAATAAATG
AGGATCACTACTAGAATCCATGTCTTTCTAATTTGAAGAACGAACTTAGACTTTACAAAAATTGG
TAAGAAGAAAACCTTTACTTAGAAGCCAAAGCATCAATATCGTATATCCTAATGAAAAGACTTTA
TTTATGGTGCCTAATCCAAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
GGACGAAATTGATTCAATAAAAAACAGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGATCTCAATCTTGAAAAGAATAGAGACCTCA
ATGAGAATGGATGCTAGTCTTATTTATGGGATGAACTTTCATTTTAAGGAAAATAGGGCAAGGAA
AAGATTTCAATGCAAAAGAAAATCATCAAATATCGTTTATCCT
Found at i:3384269 original size:55 final size:54
Alignment explanation
Indices: 3384169--3385288 Score: 1154
Period size: 55 Copynumber: 19.9 Consensus size: 54
3384159 CGCCTTTTTT
* *
3384169 CTTTTAAAAGCCCACACAAGTTGGTGGCACCTT-TAGTCCTCAAAGAGCAGGACGC
1 CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* *
3384224 CTTTTAAAGCCCACACAAGTTGGTGGCATCCTCCAGCCCTCAAAGAGCAGGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * *
3384279 CTTTCAAAGCCCACACAAGTTGGTCGCATTTTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * *
3384334 CTCTCAAA-CCCACACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGCCTTCTC
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGAGCAGGA------CAC
*
3384394 CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGA------CAC
*
3384455 CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTT-CCAGTCCTCAAAGAGCAGGA------CAC
*
3384516 CTTTTAAAGCCCACACAAGTTGGTGGCATCCTCCAGTCCTCAAAGAGCAGGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * *
3384571 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * **
3384626 CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* *
3384681 CTTTTAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACACC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACA-C
* * **
3384737 TTTTCTTTTAAAGCCCACGCAAGTTGGTGGCACTTTCAGTCCTCAAAGAGCAGGATGCTTTTT
1 ----CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGA--C---AC
* *
3384800 CTTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACAC
1 CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * * * **
3384856 CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGAATGATGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * ** *****
3384911 CTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGATGC--TTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGA-GCAGGACAC
* *
3384965 CTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGT-CTCCAAAGAGCAGGACCC
1 CTTTT-AAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCT-CAAAGAGCAGGACAC
* * * * *
3385021 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCCCGAAGAGCAGGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * *
3385076 CTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
**
3385131 CTTTTAAAGCCCACACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGTTCAC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * * **
3385185 CTCTTAAAGCCCACACAAGTTGTTGGCACCTTTCAGTCCTCAAAGAGCAGGATGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCAGTCCTCAAAGAGCAGGACAC
* * **
3385240 CTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCA
1 CTTTTAAAGCCCACACAAGTTGGTGGCAC-TTCCAGTCCTCAAAGAGCA
3385289 TAATACACTT
Statistics
Matches: 927, Mismatches: 105, Indels: 66
0.84 0.10 0.06
Matches are distributed among these distances:
54 125 0.13
55 525 0.57
56 12 0.01
59 26 0.03
60 59 0.06
61 178 0.19
62 2 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (54 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTTCCAGTCCTCAAAGAGCAGGACAC
Found at i:3384684 original size:110 final size:110
Alignment explanation
Indices: 3384175--3385288 Score: 1281
Period size: 110 Copynumber: 9.9 Consensus size: 110
3384165 TTTTCTTTTA
*
3384175 AAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACA
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
** *
3384239 CAAGTTGGTGGCATCCTCCAGCCCTCAAAGAGCAGGACACCT-TT
66 CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
* * * *
3384283 CAAAGCCCACACAAGTTGGTCGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTCTCAAA-CCCA
1 -AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCA
*
3384346 CACAAGTTGGTGGCACTTTCCAGTCCTCAAAGAGCAGGATGC-CTTCTCCTTTT
64 CACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--CAC--CT-C--TT
*
3384399 AAAGCCCACACAAGTTGGTGGCA-CTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAA
1 AAAGCCCACACAAGTTGGTGGCACCTT-TCAGTCCTCAAAGAGCAGGACGCCTT-T-C----AAA
* * *
3384463 GCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTT
59 GCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC-AC--CT-C--TT
* *
3384521 AAAGCCCACACAAGTTGGTGGCATCC-TCCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCAC
1 AAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCAC
*
3384585 ACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACCTCTT
65 ACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
* *
3384631 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACA
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
*
3384696 CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCGGGACACCTTTTCTTTT
66 CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACC---TC--TT
* *
3384746 AAAGCCCACGCAAGTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAG
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGC-----C-TTTCAAAG
*
3384810 CCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACCTCTT
60 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
* * *
3384861 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGAATGATGCCTTTCAAAGCCCACA
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
* * ***** *
3384926 CGAGTTGGTGGCACTTTT-TAGTCCTCAAAGATGC--TTTTTCTTTT
66 CAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGA-GCAGGACACCTCTT
*
3384970 CAAAGCCCACACAAGTTGGTGGCACCTTTCAGT-CTCCAAAGAGCAGGACCCCTTTCAAAGCCCA
1 -AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCT-CAAAGAGCAGGACGCCTTTCAAAGCCCA
* * * *
3385034 CACAAGTTGGTGGCACCTTT-CAATCCCCGAAGAGCAGGACACCT-TT
64 CACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
* * * *
3385080 CAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAAGACACCTTTTAAAGCCCA
1 -AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCA
** **
3385144 CACAAGTTGGTGGCACCTT-CAGTCCTCAAAGAGCAGTTCACCTCTT
64 CACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
* *
3385190 AAAGCCCACACAAGTTGTTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACA
1 AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
* *
3385255 CGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCA
66 CAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCA
3385289 TAATACACTT
Statistics
Matches: 884, Mismatches: 75, Indels: 91
0.84 0.07 0.09
Matches are distributed among these distances:
108 3 0.00
109 163 0.18
110 340 0.38
111 12 0.01
112 3 0.00
113 4 0.00
114 26 0.03
115 96 0.11
116 72 0.08
117 3 0.00
119 1 0.00
120 54 0.06
121 4 0.00
122 101 0.11
123 1 0.00
124 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (110 bp):
AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACA
CAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTCTT
Found at i:3384736 original size:165 final size:165
Alignment explanation
Indices: 3384169--3385288 Score: 1278
Period size: 165 Copynumber: 6.6 Consensus size: 165
3384159 CGCCTTTTTT
* *
3384169 CTTTTAAAAGCCCACACAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTAAAG
1 CTTTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
** *
3384233 CCCACACAAGTTGGTGGCATCCTCCAGCCCTCAAAGAGCAGGACACC-TTTCAAAGCCCACACAA
65 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAA
* *
3384297 GTTGGTCGCATTTTCCAGTCCTCAAAGAGCAGGACAC
130 GTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGACAC
* * *
3384334 CTCTCAAA-CCCACACAAGTTGGTGGCA-CTTTCCAGTCCTCAAAGAGCAGGATGCCTTCTCCTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGA------CACCTT
* * * * *
3384397 TTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAA
59 TCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGAC-AC--CT--TTTCAA
* *
3384462 AGCCCACACAAGTTGGTGGCACTTCCCAGTCCTCAAAGAGCAGGACGCCTTCTC
119 AGCCCACACAAGTTGGTGGCACTT-TCAGTCCTCAAAGAGCAGGA------CAC
*
3384516 CTTTTAAAGCCCACACAAGTTGGTGGCATCC-TCCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAG
* *
3384580 CCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAA
65 CCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAA
**
3384644 GTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGC
130 GTTGGTGGCA-CTTTCAGTCCTCAAAGAGCAGGACAC
* *
3384681 CTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCGGGACACCTTTTCTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACC-TTTC---
* * **
3384745 TAAAGCCCACGCAAGTTGGTGGCACTTT-CAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAA
61 -AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C---ACCTTTTCAAA
*
3384809 GCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACAC
120 GCCCACACAAGTTGGTGGCACTTTC-AGTCCTCAAAGAGCAGGACAC
* * * **
3384856 CTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGAATGATGCCTTTCAAAGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
* * *****
3384921 CCACACGAGTTGGTGGCACTTTT-TAGTCCTCAAAGATGC--TTTTTCTTTTCAAAGCCCACACA
66 CCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGA-GCAGGACACCTTTTCAAAGCCCACACA
*
3384983 AGTTGGTGGCACCTTTCAGT-CTCCAAAGAGCAGGACCC
129 AGTTGGTGGCA-CTTTCAGTCCT-CAAAGAGCAGGACAC
* * * *
3385021 CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAATCCCCGAAGAGCAGGACACCTTTCAAAGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
*
3385086 CCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACACCTTTT-AAAGCCCACACAAG
66 CCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAG
* **
3385150 TTGGTGGCACCTTCAGTCCTCAAAGAGCAGTTCAC
131 TTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACAC
* * **
3385185 CTCTTAAAGCCCACACAAGTTGTTGGCACCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGC
1 CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
* *
3385250 CCACACGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCA
66 CCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCA
3385289 TAATACACTT
Statistics
Matches: 821, Mismatches: 85, Indels: 99
0.82 0.08 0.10
Matches are distributed among these distances:
162 4 0.00
163 19 0.02
164 138 0.17
165 216 0.26
166 13 0.02
169 18 0.02
170 96 0.12
171 59 0.07
172 7 0.01
173 1 0.00
174 14 0.02
175 87 0.11
176 50 0.06
177 51 0.06
182 8 0.01
183 38 0.05
184 1 0.00
185 1 0.00
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (165 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGC
CCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACACCTTTTCAAAGCCCACACAAG
TTGGTGGCACTTTCAGTCCTCAAAGAGCAGGACAC
Found at i:3386097 original size:19 final size:19
Alignment explanation
Indices: 3386073--3386140 Score: 76
Period size: 19 Copynumber: 3.9 Consensus size: 19
3386063 AATTCAACAG
3386073 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
3386092 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
3386107 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
* *
3386124 ATAGTATCGATACATAA
1 TTTGTATCGATACATAA
3386141 TTAAATACTG
Statistics
Matches: 42, Mismatches: 1, Indels: 12
0.76 0.02 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 27 0.64
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.37
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:3386111 original size:32 final size:32
Alignment explanation
Indices: 3386075--3386137 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
3386065 TTCAACAGTT
* *
3386075 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATAGTATCGATACAA
3386107 TGTATCGATACATAAGTATAGTATCGATACA
1 TGTATCGATACATAAGTATAGTATCGATACA
3386138 TAATTAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.37, C:0.13, G:0.16, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTATAGTATCGATACAA
Found at i:3386112 original size:13 final size:13
Alignment explanation
Indices: 3386094--3386118 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3386084 ACATAAGTTT
3386094 TGTATCGATACAA
1 TGTATCGATACAA
3386107 TGTATCGATACA
1 TGTATCGATACA
3386119 TAAGTATAGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3386204 original size:33 final size:33
Alignment explanation
Indices: 3386162--3386226 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
3386152 CAAGGAAATG
***
3386162 TATCGATACATTTTTCTGTGTATCGATACATTA
1 TATCGATACATGGATCTGTGTATCGATACATTA
*
3386195 TATCGATACATGGATCTTTGTATCGATACATT
1 TATCGATACATGGATCTGTGTATCGATACATT
3386227 TGGAAATTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.43
Consensus pattern (33 bp):
TATCGATACATGGATCTGTGTATCGATACATTA
Found at i:3388638 original size:51 final size:52
Alignment explanation
Indices: 3388571--3388904 Score: 191
Period size: 51 Copynumber: 6.4 Consensus size: 52
3388561 AATTCTCCAC
* * * *
3388571 AATCAGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCT-AT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTCAT
* * *
3388622 AATCGGGGATACTCCAACTCCGATTTTATTTCCACAAAACACCAA-TTTCTTCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTT--TCAAAACACCAATTTTC-TCAT
* * ** * * * *** *
3388676 AATCGGGGACACTCCAACCCCG--TTAATCATCGGGGATACTCCAA-CCCCGTTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC---AAAACACCAATTTTC-TCAT
* * * * ***
3388729 -TTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTT-TCAT
1 AAT-C--GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTCAT
* * *
3388782 AATCGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTTC-CTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTC-AT
** * * *
3388834 AATCGGGGATACTCCAACATCGATTTTATTTCCAAAAATACCAATTTT-TCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTCTCAT
*
3388886 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
3388905 TCATTATTTC
Statistics
Matches: 208, Mismatches: 57, Indels: 35
0.69 0.19 0.12
Matches are distributed among these distances:
50 1 0.00
51 65 0.31
52 55 0.26
53 40 0.19
54 25 0.12
55 17 0.08
57 5 0.02
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (52 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTCAT
Found at i:3388763 original size:31 final size:28
Alignment explanation
Indices: 3388680--3388752 Score: 94
Period size: 27 Copynumber: 2.6 Consensus size: 28
3388670 CTTCACAATC
* * ***
3388680 GGGGACACTCCAACCCCGTTA-ATCATC
1 GGGGATACTCCAACCCCGTTATTTCCGA
3388707 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCCGA
3388735 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
3388753 ACTTTATTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.23, C:0.36, G:0.22, T:0.19
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCCGA
Found at i:3388861 original size:52 final size:52
Alignment explanation
Indices: 3388735--3388903 Score: 162
Period size: 52 Copynumber: 3.3 Consensus size: 52
3388725 TTATTTCCGA
* * * *** *
3388735 GGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTTTTCATAATC
1 GGGGATACTCCAACACCGATTTTATTTCCAAAAACACCAATTTTCCATAATC
* * * * *
3388786 GGGGATACTCTAACCCCGGTTTTATTTTC-AAAACACCAATTTTCCTTTAATC
1 GGGGATACTCCAACACCGATTTTATTTCCAAAAACACCAATTTTCC-ATAATC
* * * *
3388838 GGGGATACTCCAACATCGATTTTATTTCCAAAAATACCAATTTTTCACAATC
1 GGGGATACTCCAACACCGATTTTATTTCCAAAAACACCAATTTTCCATAATC
*
3388890 GAGGATACTCCAAC
1 GGGGATACTCCAAC
3388904 CTCATTATTT
Statistics
Matches: 96, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
51 36 0.38
52 46 0.48
53 14 0.15
ACGTcount: A:0.31, C:0.24, G:0.12, T:0.33
Consensus pattern (52 bp):
GGGGATACTCCAACACCGATTTTATTTCCAAAAACACCAATTTTCCATAATC
Found at i:3388958 original size:211 final size:211
Alignment explanation
Indices: 3388571--3388963 Score: 594
Period size: 211 Copynumber: 1.9 Consensus size: 211
3388561 AATTCTCCAC
* * *
3388571 AATCAGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGATACTC
1 AATCAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
* *
3388636 CAACTCCGATTTTATTTCCACAAAACACCAATTTCTTCACAATCGGGGACACTCCAACCCCGTTA
66 CAACTCCGATTTTATTTCCACAAAACACCAATTTCTTCACAATCGAGGACACTCCAACCCCATTA
* * *
3388701 ATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGACTTTATTTCCAA
131 ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATTTCCAA
3388766 AATATTGATTTTTCAT
196 AATATTGATTTTTCAT
* * * *
3388782 AATCGGGGATACTCTAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACT
1 AATCAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTT-CTATAATCGGGGATACT
* * *
3388847 CCAACAT-CGATTTTATTTCCA-AAAATACCAATTT-TTCACAATCGAGGATACTCCAACCTCAT
65 CCAAC-TCCGATTTTATTTCCACAAAACACCAATTTCTTCACAATCGAGGACACTCCAACCCCAT
*
3388909 TATTTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCG
129 TA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCG
3388964 TTATTATCTC
Statistics
Matches: 163, Mismatches: 16, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
210 26 0.16
211 101 0.62
212 35 0.21
213 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (211 bp):
AATCAGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGATACTC
CAACTCCGATTTTATTTCCACAAAACACCAATTTCTTCACAATCGAGGACACTCCAACCCCATTA
ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGAACACTCCAACCCCGACTTTATTTCCAA
AATATTGATTTTTCAT
Found at i:3390694 original size:25 final size:25
Alignment explanation
Indices: 3390666--3390745 Score: 67
Period size: 25 Copynumber: 3.2 Consensus size: 25
3390656 AATGGAGACT
3390666 TTTACGAGAATTGATGCTAGTCTTA
1 TTTACGAGAATTGATGCTAGTCTTA
* * * * * *
3390691 TTTATG-GGA-TGAAGTTTG-ATTA
1 TTTACGAGAATTGATGCTAGTCTTA
3390713 CTTTTACGAGAATTGATGCTAGTCTTA
1 --TTTACGAGAATTGATGCTAGTCTTA
3390740 TTTACG
1 TTTACG
3390746 GGATGAACTT
Statistics
Matches: 38, Mismatches: 12, Indels: 10
0.63 0.20 0.17
Matches are distributed among these distances:
22 3 0.08
23 6 0.16
24 7 0.18
25 13 0.34
26 6 0.16
27 3 0.08
ACGTcount: A:0.26, C:0.10, G:0.21, T:0.42
Consensus pattern (25 bp):
TTTACGAGAATTGATGCTAGTCTTA
Found at i:3390735 original size:49 final size:49
Alignment explanation
Indices: 3390663--3390760 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
3390653 AAGAATGGAG
* *
3390663 ACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATT
1 ACTTTTACGAGAATTGATGCTAGTCTTATTTACGGGATGAACTTTGATT
3390712 ACTTTTACGAGAATTGATGCTAGTCTTATTTACGGGATGAACTTTGATT
1 ACTTTTACGAGAATTGATGCTAGTCTTATTTACGGGATGAACTTTGATT
3390761 TTGAGGAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.27, C:0.10, G:0.21, T:0.42
Consensus pattern (49 bp):
ACTTTTACGAGAATTGATGCTAGTCTTATTTACGGGATGAACTTTGATT
Found at i:3391199 original size:159 final size:158
Alignment explanation
Indices: 3391012--3391677 Score: 345
Period size: 159 Copynumber: 4.2 Consensus size: 158
3391002 TATGCTGCCA
* *
3391012 AATCTAGAAAAGAAT-GAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTT
1 AATCTAGAAAAGAATGGA-GACTATTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTT
3391076 GATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTA-
65 GATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTT-CGGCACCAAAGCATCACTGTCATGTAT
*
3391140 CATTAAAGAAGG-GAATGTGTTTTTGGTTCCC
129 C-CTAAAG-AGGAGAATGTGTTTTTGGTTCCC
* ** * * ** * * **
3391171 AATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTATTT-ATGAGATGAACTTT
1 AATCTAGAAAAGAATGGAGACTATTATGACTATTCATGTTTCTCTTCTTTGA-GGGACAAACTTT
* ** * * * * *
3391235 GATTTTAAGGAAAATA-GG-GCAACGAAAAG-ATTTCGAT--GCA--AAAGAAAATCATTAGTAC
65 GATTCT-ATCAAAA-ACGGTGGAAAGAAAAGCATTTC-TTCGGCACCAAAG--CATCACT-GT--
* * * * *
3391293 CGTTTATCCTAATGAGGAGAATGT-TTTTATAGTGT-CT
122 CATGTATCCTAAAGAGGAGAATGTGTTTT-TGGT-TCCC
* * * * * * **
3391330 AATC-ACAAAATGAATGAAGA-TCATTTCTAGA--ATCCATGTTTGTC-TCATTTTGAGGCATGA
1 AATCTAGAAAA-GAATGGAGACT-A-TTAT-GACTATTCATGTTTCTCTTC--TTTGAGGGACAA
* ** * * * * * ** * * * *
3391390 AGTTACACTTTTAT-AAAAATTGGTGGGAAG-AAAGCCTTTATTAAGTAGCCAAAGCGTCAATAT
60 ACTTTGA-TTCTATCAAAAA-CGGTGGAAAGAAAAGCATTTCTTCGGCA-CCAAAGCATCACTGT
* * * * * * * *
3391453 CGTCTATCCTAATG-GGAAGATTTTGTTTATGGTGCCA
122 CATGTATCCTAAAGAGG-AGAATGTGTTTTTGGTTCCC
* *
3391490 AATCTAGAAAAGAAT-GAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTT
1 AATCTAGAAAAGAATGGA-GACTATTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTT
3391554 GATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTA-
65 GATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTT-CGGCACCAAAGCATCACTGTCATGTAT
*
3391618 CATTAAAGAAGG-GAATGTGTTTTTGGTTCCC
129 C-CTAAAG-AGGAGAATGTGTTTTTGGTTCCC
* *
3391649 AATCTTGAAAAGAATGGAAACTATTATGA
1 AATCTAGAAAAGAATGGAGACTATTATGA
3391678 GAATTGATGC
Statistics
Matches: 364, Mismatches: 96, Indels: 94
0.66 0.17 0.17
Matches are distributed among these distances:
154 4 0.01
156 8 0.02
157 2 0.01
158 36 0.10
159 194 0.53
160 82 0.23
161 27 0.07
162 3 0.01
163 4 0.01
165 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.32
Consensus pattern (158 bp):
AATCTAGAAAAGAATGGAGACTATTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTG
ATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTCGGCACCAAAGCATCACTGTCATGTATCC
TAAAGAGGAGAATGTGTTTTTGGTTCCC
Found at i:3391204 original size:527 final size:525
Alignment explanation
Indices: 3389937--3391238 Score: 1841
Period size: 527 Copynumber: 2.5 Consensus size: 525
3389927 CGTTGCGACA
* * *
3389937 CTAATGAGAAGACTATGTTTGTGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
1 CTAATGAGAAGAATTTGTTTATGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
* * *
3390002 TCTTTGTC-TCTTTTGAGGGACGAACTTTGATTCTATCGAAAACGTTGGAAAGAAAAGCTTTTCT
66 TGTTTGTCTTC-TTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
* * *
3390066 TACGACACCAAATCCTCAATGTCTTGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTT
130 TACGACACCAAAGCATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTT
*
3390131 GAAAAGAATGGAGACTTTTATGAGAATTGA---T-G-C-TATTTATGGGATGATGTTTGATTACT
195 GAAAAGAATGGAGACTTTTATGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATTACT
* *
3390190 TTTACGAGAATTAATGCTAGTCTTATTTATCGGATGAAGTTTGATTTTAAGGAAAATATGGTAAG
260 TTTACGAGAATTAATGCTAGTCTTATTTATCGGATGAACTTTGATTTTAAGGAAAATAGGGTAAG
*
3390255 GAAAAGATTCTGATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAAGAAAATGTGTTTAT
325 GAAAAGATTCTGATGCAAAAGAAAATCATCAATACCATTTATCCTAATGAAGAAAATGTGTTTAT
* *
3390320 AGTATCTAATCAGAAAATGAATGAGGATCACCACTAGAATCCATGTTTGTCTCATTTGAAGCATA
390 AGTATCTAATCACAAAATGAATGAAGATCACCACTAGAATCCATGTTTGTCTCATTTGAAGCATA
* *
3390385 AACTTAAACTTTACAAAAATTGGTGGGAAGAAAGGCTTTCTTACAAAACCAAAACGTCAATATCA
455 AACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTACAAAACCAAAACGTCAATATCA
*
3390450 TGTATC
520 TCTATC
* * * * *
3390456 CTAATGTGTAGAATTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGACTAGTATGACTATTCT
1 CTAATGAGAAGAATTTGTTTATGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
* * * * *
3390521 TGTTTGTCTCCTTTTAGGGATGAACATTGATTCTATCAAAAACGGTCGAAAGAAAAGCTTTTCTT
66 TGTTTGTCTTCTTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
** **
3390586 GTGACACCAAAGCATCAATGTCATGTATCCTAATTAAGGGAATGTGTTTTTGGTTCCCAATCTTG
131 ACGACACCAAAGCATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTTG
*
3390651 AAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATTACTT
196 AAAAGAATGGAGACTTTTATGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATTACTT
* *
3390716 TTACGAGAATTGATGCTAGTCTTATTTA-CGGGATGAACTTTGATTTTGAGGAAAATAGGGTAAG
261 TTACGAGAATTAATGCTAGTCTTATTTATC-GGATGAACTTTGATTTTAAGGAAAATAGGGTAAG
* * * * * * *
3390780 GAAAAGATTTTGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTAT
325 GAAAAGATTCTGATGCAAAAGAAAATCATCAATACCATTTATCCTAATGAAGAAAATGTGTTTAT
* *** *
3390845 AGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCAT
390 AGTATCTAATCACAAAATGAATGAAGATCACCACTAGAATCCATGTTTGTCTCA-TTTGAAGCAT
* * * * ** * *
3390910 AAAGTTACACTTTTATAAAATTTGGTGGGAAGAAAGCCTTTATTGA-GTAGCCAAAGCGTCAATA
454 AAACTTAAAC-TTTACAAAAATTGGTGGGAAGAAAGCCTTTATT-ACAAAACCAAAACGTCAATA
*
3390974 TCGTCTATC
517 TCATCTATC
* * * *
3390983 CTAATGGGAAGATTTTGTTTATGCTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
1 CTAATGAGAAGAATTTGTTTATGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
* * *
3391048 TGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTT
66 TGTTTGTCTTCTTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
* * * * *
3391113 CCGGCACCAAAGCATCACTGTCATGTA-CATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTT
131 ACGACACCAAAGCATCAATGTCATGTATC-CTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTT
* * *
3391177 GAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTATTTATGAGATGAACTTTGATT
195 GAAAAGAATGGAGACTTTTATGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATT
3391239 TTAAGGAAAA
Statistics
Matches: 688, Mismatches: 83, Indels: 16
0.87 0.11 0.02
Matches are distributed among these distances:
519 198 0.29
520 1 0.00
522 1 0.00
523 1 0.00
524 2 0.00
525 189 0.27
526 18 0.03
527 277 0.40
528 1 0.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.34
Consensus pattern (525 bp):
CTAATGAGAAGAATTTGTTTATGGTGCCTAATCTAGAAAAGAATGAGGATTAGTATGACTATTCA
TGTTTGTCTTCTTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
ACGACACCAAAGCATCAATGTCATGTATCCTAAAAAAGGGAATGTGTTTTTGGTTCCCAATCTTG
AAAAGAATGGAGACTTTTATGAGAATTGATGCTAGTCTTATTTATGGGATGAAGTTTGATTACTT
TTACGAGAATTAATGCTAGTCTTATTTATCGGATGAACTTTGATTTTAAGGAAAATAGGGTAAGG
AAAAGATTCTGATGCAAAAGAAAATCATCAATACCATTTATCCTAATGAAGAAAATGTGTTTATA
GTATCTAATCACAAAATGAATGAAGATCACCACTAGAATCCATGTTTGTCTCATTTGAAGCATAA
ACTTAAACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTACAAAACCAAAACGTCAATATCAT
CTATC
Found at i:3391616 original size:478 final size:478
Alignment explanation
Indices: 3390720--3395187 Score: 2311
Period size: 476 Copynumber: 9.3 Consensus size: 478
3390710 TTACTTTTAC
* * *
3390720 GAGAATTGATGCTAGTCTTATTTACGGGATGAACTTTGATTTTGAGGAAAATAGGGTAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
*
3390785 GATTTTGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
3390850 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
* *
3390915 TACACTTTTATAAAATTTGGTGGGAAGAAAGCCTTTATTGAGTAGCCAAAGCGTCAATATCGTCT
196 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
*
3390980 ATCCTAATGGGAAGATTTTGTTTATGCTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
261 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
3391045 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
326 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
3391110 CTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATC
391 CTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATC
3391175 TTGAAAAGAATGGAGACTATTAT
456 TTGAAAAGAATGGAGACTATTAT
* *
3391198 GAGAATTGATGCTAGTCTTATTTATGAGATGAACTTTGATTTTAAGGAAAATAGGGCAACGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
3391263 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
*
3391328 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATGAAGT
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
3391393 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
196 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
3391458 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
261 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
3391523 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
326 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
3391588 CTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATC
391 CTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATC
*
3391653 TTGAAAAGAATGGAAACTATTAT
456 TTGAAAAGAATGGAGACTATTAT
* *
3391676 GAGAATTGATGCTAGTCTTA-TT-T---ATG-A----GA---T---GAAAATAGGGCGAGGGAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
** *
3391725 GATTTCGATGCAAAAGAAAATCATTAGTATTGTTTATCCAAATGAGGAGAATGTTTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
* * * * *
3391790 CTAATCAGAAAATGAATGAGGATCACTACTAGAATCCATGTTTGTCTCA-TTTGAGGCATAAACT
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
* * * * * * ** * *
3391854 TAGAC-TTTACAAAAATTGATGGGAAGAAATCCTTTATTAGGAAGCCAAAGTATCAATATCATAT
196 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
* * * * * * *** *
3391918 ATCGTTATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGACCGGTATGACTAC
261 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
* * * *
3391983 TCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
326 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
* * * * * * * *
3392048 CTTACGACACCAAATCATCAATGT-ATGTATTC-GTAAAGAAGAGAATGTCTTTTTGGTTCCGAA
391 CTTCCGGCACCAAAGCATCACTGTCATGTA--CATTAAAGAAGGGAATGTGTTTTTGGTTCCCAA
* * * *
3392111 TCTGGAAAAGAAAGGAGACTGTTGT
454 TCTTGAAAAGAATGGAGACTATTAT
* * *
3392136 GATAATCGATGCTAGCCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * * *** ** ** *
3392201 GATTTCCATGCAAAAAAAAAATCATTAGCATCATTTAT-GGGATGAACTTA-AAT-TTTAAAGAA
66 GATTTCGATGC-AAAAGAAAATCATTAGTACCGTTTATCCTAATG-A-GGAGAATGTTT--TTAT
* ** ** * ** ** * * *
3392263 AATAGGGTAAGGA-AAAGGTTTCCATGCAAAAGAAAATAATC-A-ATAT-CAT-TTAT-CCTAAT
126 AGT-GTCTAATCACAAA---ATGAATG---AAGATCAT-TTCTAGA-ATCCATGTT-TGTCTCAT
*** * *** *** * * * * * * * *
3392322 AACGA-GAATATTTTTATTGTGTCTAATCACAAAA-CGAAT--GAAG--ATCATTT-CT-AGAAT
181 TTTGAGGCATAAAGTTACACT-T-TTAT-A-AAAATTG-GTGGGAAGAAAGCCTTTATTAAGTAG
* * * ** *** *
3392379 CC--A-TGT---T-T-GTCTCAT-TTTATGGCATGAAG-TTAGAGTTTA----AAAAAAT-TGGT
241 CCAAAGCGTCAATATCGTCT-ATCCTAATGG---GAAGATT-TTGTTTATGGTGCCAAATCTAG-
** * ** * * * ** * * * * ** *
3392429 AGGCAGAAATCCATTATTGAG-AAGCCAAAGCAT-TAATATCGTCTATCCGAATGAGAAGACTTT
300 A-AAAG-AAT-GAGGATT-AGTATGACTATTCATGT-TTCTCTTCT-T-TGAGGGACAA-ACTTT
* * * * * * * * ** * ** ***
3392492 GTTTATGGTGCCTAATA---TTGAAAAACATAAGGATTAGTAT---G-A-CTATTCATGTTTGTC
357 GATTCT-AT--CAAAAACGGTGGAAAGA-A-AAGCATTTCT-TCCGGCACCAAAGCATCACTGTC
* * * * * * * * * * ** * *
3392549 ---TCCTTTGAGGAA-TGAACTTTGATTCT--ATCACAAATGGTGGAAAGAA--AAG-C-ATTTC
416 ATGTACATTAAAGAAGGGAA-TGTGTTTTTGGTTC-CCAATCTTGAAAAGAATGGAGACTA-TT-
*
3392604 TT
477 AT
* * * * ** * * * * *
3392606 GCGACATCAAATCAT-CAATGTCATATATCCTAAAGAACGGAA-TGTG-TTTT-TGGTACCCAAT
1 GAGA-AT----TGATGCTA-GTC-T-TAT-TTATGGGA-TGAACTTTGATTTTAAGG-A--AAAT
*** * ** * * * * * * *
3392667 CTTGAAAATAATGGAGACTT--ATACGAATG--GATGC--TAGT--C--TTAT--TTATGA-GAT
53 AGGGCAAGGAA--AAGATTTCGATGCAAAAGAAAAT-CATTAGTACCGTTTATCCTAATGAGGA-
* * * * ** * * ** *
3392719 GAACTTCGATTTTAAAGAAAACAGGGC-AAGGA-AAAGATTTCG-ATGAAAAACAAAATC-ATCA
114 GAA--T-GTTTTTATAG------TGTCTAATCACAAA-A--T-GAATGAAGATC-ATTTCTA-GA
* ** *** * *
3392780 AT--ATCGTTTATC-C-TAATGA-GCAGATTGTGTTTATA-TTGTCTAATCATAAAA-TGAATGA
164 ATCCAT-GTTTGTCTCATTTTGAGGC--ATAAAG-TTACACTT-T-T-AT-A-AAAATTG-GTG-
* * * ** * * * * * * **** *
3392838 GGATCACTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACTTTGACTTTACAAAAAT--TG
218 GG---A--A-GA-AAGCC---TTTAT-T-AAGT-AGCCAA-AGC-GTCAATAT-CGTCTATCCTA
** ***** * *
3392901 GCGGGAAGAAAGCCTTTATTGAGAAGCCAAAGAATCAATATCGTCTATCTTAAAG-A-GAAGACT
267 ATGGGAAGATTTTGTTTA-TG-G-TGCC--A-AATC--TA--G---A----AAAGAATGAGGA-T
* * * * * * ********* * * * * *****
3392964 TTGT-TTACGATGCCTAATTGAGAAAAGATGA-GGATTAGTATGACTATTCATGTTTGTCTGCTT
314 TAGTATGACTATTCAT-GTTTCTCTTCTTTGAGGGA-CA--A--ACT-TTGAT-TCTATCAAAAA
* * * * *** * ** * * * **
3393027 TGAG-GG-ACGAACTTAG-A-TTCTATAAAACGG-TGGAAAGAAAAACATTTCTTGCAACACCAA
371 CG-GTGGAAAGAA--AAGCATTTCT-T---CCGGCACCAAAGCATCAC-TGTCATG-TACA-TTA
* * * * * *
3393087 ATCATCAATGTCATGCATCCTAAAGAAGGGAATGAGTTTTTGGTTCCGAATCTGGAAAAGAACGA
426 A--A-GAA-------------------GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGG
*
3393152 AGACTGTTAT
469 AGACTATTAT
* * *
3393162 GAGAATCGATGCTAGTCTTATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * *
3393227 GATTTCGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGATTGTGTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
* * * * *
3393292 CTAATCACAAAATGAATGAGGATCACTACTAGAATCCATGTTTGTCTCA--TTGAGGTA-AGAAC
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATA-AAG
** * * * * * * *
3393354 TTTGAC-TTTACAAAAATTGGTGGGAAGAAATCCTTTATTAAGAAGCCAAAGCATAAATATCATA
195 TTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTC
* * * * * * *
3393418 TATCGTAATGAGAAGACTCTGTTTATGCTGCCTAATCTAGAAAAGAATGAGGATTAGTGTGACTA
260 TATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTA
* * * ** * *
3393483 TTCATCTTTGTCTCCTTTGAGGGAGGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTT
325 TTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATT
* * * * * * * * * *
3393548 TCTTGCGACACCAAATCATCAATGTCATGTATTC-GTAAATAAGGAAATGTCTTTTTGGTTTCGA
390 TCTTCCGGCACCAAAGCATCACTGTCATGTA--CATTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* *
3393612 ATCTGGAAAAGAATGGAGACTGTTAT
453 ATCTTGAAAAGAATGGAGACTATTAT
* ** *
3393638 GAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAAAAAAATAGGGCAAGGACAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * *
3393703 GATTTCCATGCAAAAAAAAATCATTAGCATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
** * * * *
3393768 CTAATCACAAAACAAATGAAGACCATTTCTAGAATCCATATTTGTCTCATTTTGAGCCATGAAGT
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
* * * * * *
3393833 TAGAC-TTTAAAAAAATTGGTGGGAAGAAAGCCCTTATTGAGAAGCCAAAGCATCAATATCGTCT
196 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
* * * * *
3393897 ATCCTAATGAGAAGACTTTGTTTATGGTGCCAAATCAAGAAAAGCATAAGGATTAGTATGACTAT
261 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
* * * * *
3393962 TCATGTTTGTCTCCTTTGAGGGACAAATTTTGATTCTATCAAAAATGATGGAAAGAAAAGCATTT
326 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
* ** * * *
3394027 CTTGCAACATCAAAGCATCAATGTCATGTATC-CTAAAGAAGGGAATGTGTTTTT-GTTCCC-AT
391 CTTCCGGCACCAAAGCATCACTGTCATGTA-CATTAAAGAAGGGAATGTGTTTTTGGTTCCCAAT
* *
3394089 CCTTGAAAAGAATAGAAACT-TCTAT
455 -CTTGAAAAGAATGGAGACTAT-TAT
* *
3394114 GAGAATGGATGCTAGTCTTATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * * *
3394179 GGTTTCCACGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
* *
3394244 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGTGGCATGAAGT
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
* * * * * *
3394309 TAGAC-TTTAAAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTTT
196 TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
* * * * * *
3394373 ATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGCATAAGGATTAGTATGACTAT
261 ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
* * ** * *
3394438 TCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCATTT
326 TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
* * * * * * * *
3394503 CTTGCGACACCAAATCATTAATGTCATGTATC-CTAAAGAAGGGAATGCGTTTTTTGTTCCCAAT
391 CTTCCGGCACCAAAGCATCACTGTCATGTA-CATTAAAGAAGGGAATGTGTTTTTGGTTCCCAAT
* * *
3394567 CTTGAAAGGAATGGAGACTTTTAC
455 CTTGAAAAGAATGGAGACTATTAT
* * *
3394591 AAGAATGGATGCTAGTCTTATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGG-AAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * * * * * *
3394655 GATTTCGATGCAAAACAAAATCATCAATATCATTTATCCTAATGAGCAGATTGTGTTTATATTGT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
* * * * *
3394720 CTAATCACAAAATGAATGAGGATCACTACTAGAATCCACT-TTTGTCTCA-TTTGAGGCAAAAAC
131 CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCA-TGTTTGTCTCATTTTGAGGCATAAAG
** * * * * * *
3394783 TTTGAC-TTTACAAAACTTGGTGGGAAGAAAGCCTTTATTGAGAAGCCAAAACATCAATATCGTC
195 TTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTC
* * * * * * * * * * * *
3394847 TATCTTAAAGAGAAAACTTTGTTTACGATGCCTAATCGAGAAAAG-ATGAGGATTAATATAACTC
260 TATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTA
* * * * *
3394911 TTCATGTTTGTCTGCTTTGAGGGACGAACTTAGATTCTATCAAAAATGGTGGAAAGAAAAGCATT
325 TTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATT
* * * * * **
3394976 TCTTGCGACACCAAATCATCAATGTCATG--CATCCTAAAGAAGGGAATGTGTTTTTAGTTCTGA
390 TCTTCCGGCACCAAAGCATCACTGTCATGTACAT--TAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * *
3395039 ATCTGGAAAAAAATAGAGACTGTTAT
453 ATCTTGAAAAGAATGGAGACTATTAT
*
3395065 GAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
** * * * * *
3395130 GATTTCGATAAAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTTTTT
66 GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTT
3395188 GTCGCAACGT
Statistics
Matches: 3104, Mismatches: 614, Indels: 547
0.73 0.14 0.13
Matches are distributed among these distances:
459 5 0.00
460 250 0.08
461 20 0.01
462 124 0.04
465 4 0.00
466 1 0.00
467 1 0.00
468 2 0.00
469 6 0.00
470 10 0.00
471 14 0.00
472 36 0.01
473 32 0.01
474 225 0.07
475 215 0.07
476 798 0.26
477 148 0.05
478 732 0.24
479 22 0.01
480 6 0.00
481 20 0.01
482 13 0.00
483 14 0.00
484 8 0.00
485 7 0.00
486 2 0.00
487 9 0.00
490 3 0.00
492 1 0.00
495 4 0.00
496 1 0.00
498 4 0.00
499 7 0.00
500 7 0.00
501 12 0.00
502 9 0.00
503 13 0.00
504 7 0.00
505 2 0.00
506 1 0.00
507 4 0.00
508 10 0.00
509 14 0.00
510 1 0.00
511 4 0.00
514 2 0.00
515 2 0.00
516 6 0.00
517 8 0.00
518 17 0.01
519 8 0.00
520 10 0.00
521 8 0.00
522 5 0.00
523 6 0.00
524 14 0.00
525 7 0.00
526 4 0.00
527 1 0.00
528 4 0.00
530 1 0.00
531 6 0.00
532 1 0.00
533 1 0.00
534 2 0.00
535 1 0.00
538 2 0.00
539 6 0.00
540 3 0.00
541 1 0.00
542 1 0.00
543 1 0.00
544 4 0.00
545 12 0.00
546 17 0.01
547 23 0.01
548 12 0.00
549 13 0.00
550 5 0.00
551 5 0.00
552 3 0.00
553 12 0.00
554 19 0.01
555 4 0.00
556 14 0.00
557 5 0.00
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (478 bp):
GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
GATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
CTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTCTCATTTTGAGGCATAAAGT
TACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGTAGCCAAAGCGTCAATATCGTCT
ATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAATGAGGATTAGTATGACTAT
TCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTT
CTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAATGTGTTTTTGGTTCCCAATC
TTGAAAAGAATGGAGACTATTAT
Found at i:3392106 original size:460 final size:462
Alignment explanation
Indices: 3390766--3392168 Score: 2087
Period size: 478 Copynumber: 3.0 Consensus size: 462
3390756 TGATTTTGAG
* *
3390766 GAAAATAGGGTAAGGAAAAGATTTTGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAG
1 GAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAG
3390831 GAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
66 GAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
*
3390896 TCATTTTGAGGCATAAAGTTACACTTTTATAAAATTTGGTGGGAAGAAAGCCTTTATT-GAGTAG
131 TCATTTTGAGGCATAAAGTTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAG-GTAG
*
3390960 CCAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGCTGCCAAATCTAGAAAAGA
195 CCAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGA
3391025 ATGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAA
260 ATGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAA
3391090 CGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAA
325 CGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAA
3391155 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTATT
390 TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTA-T
3391220 TATGAGATGAACTTTGATTTT
454 T-T---ATG-A----GA---T
*
3391241 AAGGAAAATAGGGCAACGAAAAGATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAAT
1 ---GAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAAT
3391306 GAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTT
63 GAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTT
* *
3391371 GTCTCATTTTGAGGCATGAAGTTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAAGT
128 GTCTCATTTTGAGGCATAAAGTTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAGGT
3391436 AGCCAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAA
193 AGCCAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAA
3391501 GAATGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAA
258 GAATGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAA
3391566 AACGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGG
323 AACGGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGG
*
3391631 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAAACTATTATGAGAATTGATGCTAGTCTTA
388 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTA
3391696 TTTATGAGAT
453 TTTATGAGAT
* * ** *
3391706 GAAAATAGGGCGAGGGAAAGATTTCGATGCAAAAGAAAATCATTAGTATTGTTTATCCAAATGAG
1 GAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAG
* * * *
3391771 GAGAATGTTTTTATAGTGTCTAATCAGAAAATGAATGAGGATCACTACTAGAATCCATGTTTGTC
66 GAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
* * * * * *
3391836 TCA-TTTGAGGCATAAACTTAGAC-TTTACAAAAATTGATGGGAAGAAATCCTTTATTAGGAAGC
131 TCATTTTGAGGCATAAAGTTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAGGTAGC
** * * * * * * * *
3391899 CAAAGTATCAATATCATATATCGTTATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAA
196 CAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAA
*** * * * *
3391964 TGAGGACCGGTATGACTACTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAAC
261 TGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAAC
* * * * * * *
3392029 GGTGGAAAGAAAAGCTTTTCTTACGACACCAAATCATCAATGT-ATGTATTC-GTAAAGAAGAGA
326 GGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTA--CATTAAAGAAGGGA
* * * * * * * * *
3392092 ATGTCTTTTTGGTTCCGAATCTGGAAAAGAAAGGAGACTGTTGTGATAATCGATGCTAGCCTTAT
389 ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTAT
*
3392157 TTATGGGAT
454 TTATGAGAT
3392166 GAA
1 GAA
3392169 CTTTGATTTT
Statistics
Matches: 861, Mismatches: 61, Indels: 24
0.91 0.06 0.03
Matches are distributed among these distances:
459 5 0.01
460 262 0.30
461 18 0.02
462 123 0.14
465 1 0.00
468 2 0.00
472 1 0.00
473 3 0.00
476 1 0.00
477 2 0.00
478 443 0.51
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (462 bp):
GAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATTAGTACCGTTTATCCTAATGAG
GAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTTCTAGAATCCATGTTTGTC
TCATTTTGAGGCATAAAGTTACACTTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTAGGTAGC
CAAAGCGTCAATATCGTCTATCCTAATGGGAAGATTTTGTTTATGGTGCCAAATCTAGAAAAGAA
TGAGGATTAGTATGACTATTCATGTTTCTCTTCTTTGAGGGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAGAAAAGCATTTCTTCCGGCACCAAAGCATCACTGTCATGTACATTAAAGAAGGGAAT
GTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTATTT
ATGAGAT
Found at i:3392256 original size:78 final size:80
Alignment explanation
Indices: 3392155--3392304 Score: 241
Period size: 78 Copynumber: 1.9 Consensus size: 80
3392145 TGCTAGCCTT
** *
3392155 ATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAA-AAA
1 ATTTATGGGATGAACTTAAATTTTAAAGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAA
3392219 A-AATCATTAGCATC
66 ATAATCATTAGCATC
* *
3392233 ATTTATGGGATGAACTTAAATTTTAAAGAAAATAGGGTAAGGAAAAGGTTTCCATGCAAAAGAAA
1 ATTTATGGGATGAACTTAAATTTTAAAGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAA
3392298 ATAATCA
66 ATAATCA
3392305 ATATCATTTA
Statistics
Matches: 65, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
78 56 0.86
79 4 0.06
80 5 0.08
ACGTcount: A:0.45, C:0.09, G:0.19, T:0.27
Consensus pattern (80 bp):
ATTTATGGGATGAACTTAAATTTTAAAGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAA
ATAATCATTAGCATC
Found at i:3393745 original size:476 final size:475
Alignment explanation
Indices: 3392233--3395183 Score: 4022
Period size: 476 Copynumber: 6.2 Consensus size: 475
3392223 CATTAGCATC
** * * * * *
3392233 ATTTATGGGATGAACTTAAATTTTAAAGAAAATAGGGTAAGGAAAAGGTTTCCATGCAAAAGAAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
* * * * * * *
3392298 ATAATCAATATCATTTATCCTAATAACGAGAATATTTTTATTGTGTCTAATCACAAAACGAATGA
66 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
* * * * * *
3392363 AGATCATTTCTAGAATCCATGTTTGTCTCATTTTATGGCATGAAGTTAGAGTTTAAAAAAATTGG
131 AGATCACTACTAGAATCCATGTTTGTCTCATTTGA-GGCAAGAACTTAGACTTTAAAAAAATTGG
* * * * * *
3392428 TAGGCAGAAATCCATTATTGAGAAGCCAAAGCATTAATATCGTCTATCCGAATGAGAAGACTTTG
195 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
* * *
3392493 TTTATGGTGCCTAATATTGAAAAACATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
260 TTTATGGTGCCTAATCTAG-AAAAGATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
* * * *
3392558 GAATGAACTTTGATTCTATCACAAATGGTGGAAAGAAAAGCATTTCTTGCGACATCAAATCATCA
324 GGACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCA
* * * * *
3392623 ATGTCATATATCCTAAAGAACGGAATGTGTTTTTGGTACCCAATCTTGAAAATAATGGAGAC--T
389 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGT
*
3392686 TAT-ACGAATGGATGCTAGTCTT
454 TATGA-GAATCGATGCTAGTCTT
* * *
3392708 ATTTATGAGATGAACTTCGATTTTAAAGAAAACAGGGCAAGGAAAAGATTTCGATG-AAAAACAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAA-AA
* * * * *
3392772 AATCATCAATATCGTTTATCCTAATGAGCAGATTGTGTTTATATTGTCTAATCATAAAATGAATG
65 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATG
* * * *
3392837 AGGATCACTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACTTTGACTTTACAAAAATTGG
130 AAGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAAAAAAATTGG
* * * *
3392902 CGGGAAGAAAGCCTTTATTGAGAAGCCAAAGAATCAATATCGTCTATCTTAAAGAGAAGACTTTG
195 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
* * * *
3392967 TTTACGATGCCTAAT-TGAGAAAAGATGAGGATTAGTATGACTATTCATGTTTGTCTGCTTTGAG
260 TTTATGGTGCCTAATCT-AGAAAAGATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
* * * *
3393031 GGACGAACTTAGATTCTAT--AAAACGGTGGAAAGAAAAACATTTCTTGCAACACCAAATCATCA
324 GGACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCA
* * * * *
3393094 ATGTCATGCATCCTAAAGAAGGGAATGAGTTTTTGGTTCCGAATCTGGAAAAGAACGAAGACTGT
389 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGT
3393159 TATGAGAATCGATGCTAGTCTT
454 TATGAGAATCGATGCTAGTCTT
* * * *
3393181 ATTTATGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCGATGCAAAAGAAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
* *
3393246 ATCATCAATATCGTTTATCCTAATGAGGAGATTGTGTTTATAGTGTCTAATCACAAAATGAATGA
66 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
* * * *
3393311 GGATCACTACTAGAATCCATGTTTGTCTCA-TTGAGGTAAGAACTTTGACTTTACAAAAATTGGT
131 AGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAAAAAAATTGGT
* * * * * * *
3393375 GGGAAGAAATCCTTTATTAAGAAGCCAAAGCATAAATATCATATATCGTAATGAGAAGACTCTGT
196 GGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGT
* * * *
3393440 TTATGCTGCCTAATCTAGAAAAGAATGAGGATTAGTGTGACTATTCATCTTTGTCTCCTTTGAGG
261 TTATGGTGCCTAATCTAGAAAAG-ATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
* *
3393505 GAGGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAA
325 GACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCAA
* * * * * *
3393570 TGTCATGTATTCGTAAATAAGGAAATGTCTTTTTGGTTTCGAATCTGGAAAAGAATGGAGACTGT
390 TGTCATGTA-TCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGT
3393635 TATGAGAATCGATGCTAGTCTT
454 TATGAGAATCGATGCTAGTCTT
* ** * *
3393657 ATTTATGGGATGAACTTTGATTTTAAAAAAAATAGGGCAAGGACAAGATTTCCATGCAAAAAAAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
* ** * **
3393722 ATCATTAGCATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAACAAATGA
66 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
* * * * * * *
3393787 AGACCATTTCTAGAATCCATATTTGTCTCATTTTGAGCCATGAAGTTAGACTTTAAAAAAATTGG
131 AGATCACTACTAGAATCCATGTTTGTCTCA-TTTGAGGCAAGAACTTAGACTTTAAAAAAATTGG
*
3393852 TGGGAAGAAAGCCCTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
195 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
* *
3393917 TTTATGGTGCCAAATCAAGAAAAGCATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
260 TTTATGGTGCCTAATCTAGAAAAG-ATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
* * * * * *
3393982 GGACAAATTTTGATTCTATCAAAAATGATGGAAAGAAAAGCATTTCTTGCAACATCAAAGCATCA
324 GGACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCA
* * *
3394047 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTT-GTTCCC-ATCCTTGAAAAGAATAGAAACT-
389 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAAT-CTGGAAAAGAATGGAGACTG
*
3394109 TCTATGAGAATGGATGCTAGTCTT
453 T-TATGAGAATCGATGCTAGTCTT
* * * *
3394133 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGGTTTCCACGCAAAAGAAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
* *
3394198 ATCATCAATATCGTTTATCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGA
66 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
* * * * *
3394263 AGATCATTTCTAGAATCCATGTTTGTCTCATTTTGTGGCATGAAGTTAGACTTTAAAAAAATTGG
131 AGATCACTACTAGAATCCATGTTTGTCTCA-TTTGAGGCAAGAACTTAGACTTTAAAAAAATTGG
*
3394328 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTTTG
195 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
*
3394393 TTTATGGTGCCTAATCTTGAAAAGCATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
260 TTTATGGTGCCTAATCTAGAAAAG-ATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAG
* * *
3394458 GGATGAACTTTGATTCTATCAAAAATGGTAGAAAGAAAAGCATTTCTTGCGACACCAAATCATTA
324 GGACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCA
* * * * *
3394523 ATGTCATGTATCCTAAAGAAGGGAATGCGTTTTTTGTTCCCAATCTTGAAAGGAATGGAGACTTT
389 ATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGT
** *
3394588 TACAAGAATGGATGCTAGTCTT
454 TATGAGAATCGATGCTAGTCTT
*
3394610 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGG-AAAGATTTCGATGCAAAACAAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
* * *
3394674 ATCATCAATATCATTTATCCTAATGAGCAGATTGTGTTTATATTGTCTAATCACAAAATGAATGA
66 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
* * * * *
3394739 GGATCACTACTAGAATCCACT-TTTGTCTCATTTGAGGCAAAAACTTTGACTTTACAAAACTTGG
131 AGATCACTACTAGAATCCA-TGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAAAAAAATTGG
* * * *
3394803 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAACATCAATATCGTCTATCTTAAAGAGAAAACTTTG
195 TGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTG
* * * * * * * *
3394868 TTTACGATGCCTAATCGAGAAAAGATGAGGATTAATATAACTCTTCATGTTTGTCTGCTTTGAGG
260 TTTATGGTGCCTAATCTAGAAAAGATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGG
*
3394933 GACGAACTTAGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCAA
325 GACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCAA
* * ** * *
3394998 TGTCATGCATCCTAAAGAAGGGAATGTGTTTTTAGTTCTGAATCTGGAAAAAAATAGAGACTGTT
390 TGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGTT
3395063 ATGAGAATCGATGCTAGTCTT
455 ATGAGAATCGATGCTAGTCTT
* *
3395084 ATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGAT-AAAAAAGAA
1 ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAA-AA
*
3395148 AATCATCAATATCATTTATCCTATTGAGGAGAATGT
65 AATCATCAATATCATTTATCCTAATGAGGAGAATGT
3395184 TTTTGTCGCA
Statistics
Matches: 2196, Mismatches: 259, Indels: 42
0.88 0.10 0.02
Matches are distributed among these distances:
471 91 0.04
472 106 0.05
473 279 0.13
474 316 0.14
475 342 0.16
476 745 0.34
477 105 0.05
478 212 0.10
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (475 bp):
ATTTATGGGATGAACTTCGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAAAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGA
AGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTAAAAAAATTGGT
GGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGT
TTATGGTGCCTAATCTAGAAAAGATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGG
ACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCATTTCTTGCGACACCAAATCATCAAT
GTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAAGAATGGAGACTGTTA
TGAGAATCGATGCTAGTCTT
Found at i:3394482 original size:159 final size:157
Alignment explanation
Indices: 3392442--3394998 Score: 734
Period size: 159 Copynumber: 16.2 Consensus size: 157
3392432 CAGAAATCCA
* * * * *
3392442 TTATTGAGAAGCCAAAGCATTAATATCGTCTATCCGAATGAGAAGACTTTGTTTATGGTGCCTAA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
* * *
3392507 TATTGAAAA-ACATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGAATGAACTTTGA
66 TCTAGAAAAGA-ATAAGGATTAGTATGA--ATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGA
*
3392571 TTCTATCACAAA-TGGTGGAAAGAAAAGCAT
128 TT-TATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * * * * *
3392601 TTCTTGCGACA-TCAAATCATCAATGTCATATATCCTAA--AGAACGGAATGTGTTTTTGGTACC
1 TTATTGAGA-AGCCAAATCATCAATATCGTTTATCCTAATGAGAA--GAATTTGTTTATGGTGCC
* * * * * ** * * ** *
3392663 CAATCTTGAAAATAAT-GGAGACTTA-TACGAATGGATGCTAGTCTTATTT-ATGAGATGAACTT
63 TAATCTAGAAAAGAATAAG-GA-TTAGTATGAATTCATGTTTGTCTCCTTTGA-GGGATGAACTT
* * ** * *
3392725 CGATTT-TAAAGAAAACAGG-GCAAGGAAAAG-AT
125 TGATTTAT-CA-AAAATTGGTGGAAAGAAAAGCAT
* * * * ** *
3392757 TTCGA-TGAAAAACAAAATCATCAATATCGTTTATCCTAATGAGCAG-ATTGTGTTTATATTGTC
1 TT--ATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATT-TGTTTATGGTGCC
* * * * * * ** *
3392820 TAATCATA-AAATGAATGAGGATCACTACTAGAATCCATGTTTGTCTCATTTGAGACAAGAACTT
63 TAATC-TAGAAAAGAATAAGGATTAGTA-T-GAATTCATGTTTGTCTCCTTTGAGGGATGAACTT
* * *
3392884 TGACTTTA-CAAAAATTGGCGGGAAG-AAAGCCT
125 TGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
** * * * * * *
3392916 TTATTGAGAAGCCAAAGAATCAATATCGTCTATCTTAAAGAGAAGACTTTGTTTACGATGCCTAA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
* * * *
3392981 T-TGAGAAAAG-ATGAGGATTAGTATGACTATTCATGTTTGTCTGCTTTGAGGGACGAACTTAGA
66 TCT-AGAAAAGAATAAGGATTAGTATGA--ATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGA
* *
3393044 TTCTAT--AAAA-CGGTGGAAAGAAAAACAT
128 TT-TATCAAAAATTGGTGGAAAGAAAAGCAT
* * * ** ** * *
3393072 TTCTTGCA-ACA-CCAAATCATCAATGTCATGCATCCTAA--AGAAGGGAATGAGTTTTTGGTTC
1 TTATTG-AGA-AGCCAAATCATCAATATCGTTTATCCTAATGAGAA--GAATTTGTTTATGGTGC
* * * * * * * ** *
3393133 CGAATCTGGAAAAGAACGAA-GACT-GTTATGAGAATCGATGCTAGTCTTATTT-ATGGGATAAA
62 CTAATCTAGAAAAGAA-TAAGGATTAG-TATGA-ATTC-ATGTTTGTCTCCTTTGA-GGGATGAA
* * *
3393195 CTTTGATTT-TAAGGAAAATAGG-GCAAAGAAAAG-AT
122 CTTTGATTTATCA--AAAATTGGTGGAAAGAAAAGCAT
* * * * *
3393230 TTCGA-TGCAAAAG-AAAATCATCAATATCGTTTATCCTAATGAGGAG-ATTGTGTTTATAGTGT
1 TT--ATTG-AGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATT-TGTTTATGGTGC
* * * * * * * *
3393292 CTAATC-ACAAAATGAATGAGGATCACTACTAGAATCCATGTTTGTCT-CATTGAGGTAAGAACT
62 CTAATCTAGAAAA-GAATAAGGATTAGTA-T-GAATTCATGTTTGTCTCCTTTGAGGGATGAACT
* * *
3393355 TTGACTTTA-CAAAAATTGGTGGGAAG-AAATCCT
124 TTGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * * * * *
3393388 TTATTAAGAAGCCAAAGCATAAATATCATATATCGTAATGAGAAGACTCTGTTTATGCTGCCTAA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
* * * *
3393453 TCTAGAAAAGAATGAGGATTAGTGTGACTATTCATCTTTGTCTCCTTTGAGGGAGGAACTTTGAT
66 TCTAGAAAAGAATAAGGATTAGTATGA--ATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGAT
*
3393518 TCTATCAAAAA-TGGTGGAAAGAAAAGCTT
129 T-TATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * * * * * * * **
3393547 TTCTTGCGACA-CCAAATCATCAATGTCATGTATTCGTAAATAAGGA-AATGTCTTTTTGGTTTC
1 TTATTGAGA-AGCCAAATCATCAATATCGTTTA-TCCT-AATGAGAAGAATTTGTTTATGGTGCC
* * * * * * * **
3393610 GAATCTGGAAAAGAAT-GGAGACT-GTTATGAGAATCGATGCTAGTCTTATTT-ATGGGATGAAC
63 TAATCTAGAAAAGAATAAG-GATTAG-TATGA-ATTC-ATGTTTGTCTCCTTTGA-GGGATGAAC
** * * * *
3393672 TTTGATTTTAAAAAAAATAGG-GCAAGGACAAG-AT
123 TTTGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
*** * ** * * * *
3393706 TTCCA-TGCA-AAAAAAAATCATTAGCATCATTTATCCTAATGAGGAGAATGTT-TTTATAGTGT
1 TT--ATTG-AGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAAT-TTGTTTATGGTGC
* * * ** * * * **
3393768 CTAATC-ACAAAACAAATGAAGACCATTTCTA-GAATCCATATTTGTCTCATTTTGAGCCATGAA
62 CTAATCTAGAAAA-GAAT-AAG--GATTAGTATGAATTCATGTTTGTCTC-CTTTGAGGGATGAA
* * * * **
3393831 GTTAGACTTTA-AAAAAATTGGTGGGAAG-AAAGCCC
122 CTTTGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
* * * *
3393866 TTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCAAA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
* * ** *
3393931 TCAAGAAAAGCATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACAAATTTTGAT
66 TCTAGAAAAGAATAAGGATTAGTATGA--ATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGAT
*
3393996 TCTATCAAAAA-TGATGGAAAGAAAAGCAT
129 T-TATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * * * * *
3394025 TTCTTGCA-ACA-TCAAAGCATCAATGTCATGTATCCTAA--AGAAGGGAATGTGTTT-TTGTTC
1 TTATTG-AGA-AGCCAAATCATCAATATCGTTTATCCTAATGAGAA--GAATTTGTTTATGGTGC
* * * * ** * * **
3394085 C-CATCCTTGAAAAGAAT-AGAAACTT-CTATGAGAATGGATGCTAGTCTTATTT-ATGGGATGA
62 CTAAT-CTAGAAAAGAATAAG-GA-TTAGTAT--GAATTCATGTTTGTCTCCTTTGA-GGGATGA
* * * * * *
3394146 ACTTCGATTT-TAAGGAAAATAGG-GCAAGGAAAAG-GT
121 ACTTTGATTTATCA--AAAATTGGTGGAAAGAAAAGCAT
* * * * * *
3394182 TTCCA-CGCAAAAG-AAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTT-TTTATAGTGT
1 TT--ATTG-AGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAAT-TTGTTTATGGTGC
* * * * * * * *
3394244 CTAATC-ACAAAATGAATGAA-GATCATTTCTAGAATCCATGTTTGTCTCATTTTGTGGCATGAA
62 CTAATCTAGAAAA-GAAT-AAGGATTA-GTAT-GAATTCATGTTTGTCTC-CTTTGAGGGATGAA
* * * * *
3394307 GTTAGACTTTA-AAAAAATTGGTGGGAAG-AAAGCCT
122 CTTTGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
* *
3394342 TTATTGAGAAGCCAAAGCATCAATATCGTTTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
* *
3394407 TCTTGAAAAGCATAAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGAT
66 TCTAGAAAAGAATAAGGATTAGTATGA--ATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGAT
*
3394472 TCTATCAAAAA-TGGTAGAAAGAAAAGCAT
129 T-TATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * * ** * * *
3394501 TTCTTGCGACA-CCAAATCATTAATGTCATGTATCCTAA--AGAAGGGAATGCGTTTTTTGTTCC
1 TTATTGAGA-AGCCAAATCATCAATATCGTTTATCCTAATGAGAA--GAATTTGTTTATGGTGCC
* * * * * * ** * * **
3394563 CAATCTTGAAAGGAAT-GGAGACTTTTA-CAAGAATGGATGCTAGTCTTATTT-ATGGGATGAAC
63 TAATCTAGAAAAGAATAAG-GA---TTAGTATGAATTCATGTTTGTCTCCTTTGA-GGGATGAAC
* * * * *
3394625 TTCGATTT-T-AAGGAAAATAG-GGCAAGGAAAG-AT
123 TTTGATTTATCAA--AAATTGGTGGAAAGAAAAGCAT
* * * * ** *
3394658 TTCGA-TGCA-AAACAAAATCATCAATATCATTTATCCTAATGAGCAG-ATTGTGTTTATATTGT
1 TT--ATTG-AGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATT-TGTTTATGGTGC
* * * * * * * **
3394720 CTAATC-ACAAAATGAATGAGGATCACTACTAGAATCCACT-TTTGTCTCATTTGAGGCAAAAAC
62 CTAATCTAGAAAA-GAATAAGGATTAGTA-T-GAATTCA-TGTTTGTCTCCTTTGAGGGATGAAC
* * *
3394783 TTTGACTTTA-CAAAACTTGGTGGGAAG-AAAGCCT
123 TTTGA-TTTATCAAAAATTGGTGGAAAGAAAAGCAT
* * * * * *
3394817 TTATTGAGAAGCCAAAACATCAATATCGTCTATCTTAAAGAGAA-AACTTTGTTTACGATGCCTA
1 TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAA-TTTGTTTATGGTGCCTA
* * * * * *
3394881 ATCGAGAAAAG-ATGAGGATTAATAT-AACTCTTCATGTTTGTCTGCTTTGAGGGACGAACTTAG
65 ATCTAGAAAAGAATAAGGATTAGTATGAA---TTCATGTTTGTCTCCTTTGAGGGATGAACTTTG
3394944 ATTCTATCAAAAA-TGGTGGAAAGAAAAGCAT
127 ATT-TATCAAAAATTGGTGGAAAGAAAAGCAT
* *
3394975 TTCTTGCGACA-CCAAATCATCAAT
1 TTATTGAGA-AGCCAAATCATCAAT
3394999 GTCATGCATC
Statistics
Matches: 1714, Mismatches: 487, Indels: 395
0.66 0.19 0.15
Matches are distributed among these distances:
154 6 0.00
155 15 0.01
156 97 0.06
157 332 0.19
158 466 0.27
159 586 0.34
160 177 0.10
161 28 0.02
162 7 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (157 bp):
TTATTGAGAAGCCAAATCATCAATATCGTTTATCCTAATGAGAAGAATTTGTTTATGGTGCCTAA
TCTAGAAAAGAATAAGGATTAGTATGAATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTT
ATCAAAAATTGGTGGAAAGAAAAGCAT
Found at i:3398377 original size:20 final size:20
Alignment explanation
Indices: 3398352--3398476 Score: 151
Period size: 20 Copynumber: 5.7 Consensus size: 20
3398342 TTTTAACTAG
3398352 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
3398372 ATGTATCGATACATCTGGGTAAAAAGACAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
3398403 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
3398423 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
3398443 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
3398463 ATGTATCGATACAT
1 ATGTATCGATACAT
3398477 CTGAGTAAAA
Statistics
Matches: 94, Mismatches: 0, Indels: 22
0.81 0.00 0.19
Matches are distributed among these distances:
20 69 0.73
21 2 0.02
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 15 0.16
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:3399097 original size:28 final size:28
Alignment explanation
Indices: 3399022--3399670 Score: 519
Period size: 28 Copynumber: 23.2 Consensus size: 28
3399012 CACCAACTTG
* *
3399022 TGTGGGCTTTAGAGAAAGTTGCCACTGACTT
1 TGTGGGCTTT-GA-AAGGATGCCACTGAC-T
*
3399053 GTGTGGGCTTTAAAAGGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3399082 CGTGGGCTTTGGAAGGATGCCATTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3399110 CGTGGGCTTTGGAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3399138 TGTGGGATTTG-AAGAGATGCCACTAACT
1 TGTGGGCTTTGAAAG-GATGCCACTGACT
*
3399166 TGTGAGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
** * *
3399194 CATGGGCTTTGAAAAGG-TACCATTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
3399222 TGTGGGATATGAAAGGGTGCCACTGA-T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
3399249 TCATGGGCTCTGAAAAGATGGCATTGACT
1 T-GTGGGCTTTGAAAGGATGCCACTGACT
* *
3399278 TATGGGCTTTGAAAGGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3399306 TGT-GGCTATGAAA-AAGTGCCACTAACT
1 TGTGGGCTTTGAAAGGA-TGCCACTGACT
*
3399333 TGTGGGCTATGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACTGACT
* * *
3399361 TTTGGGCTTGGAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3399389 TGTGGGTTTTGAAAGGGTGCCACTGA-T
1 TGTGGGCTTTGAAAGGATGCCACTGACT
3399416 TCGTGGGCTTTGAAAAGGATGCCACTGACT
1 T-GTGGGCTTTG-AAAGGATGCCACTGACT
* * *
3399446 TGTGAGCTTTAAAATGATGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * *
3399474 TATGGGCTTTGAAATGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* ** * *
3399502 TGTGGACTTAAAAAGG-TGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * *
3399529 TGTGGAC-TTAAAATGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* *
3399556 TGTGGGCTTTGAAATGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * * *
3399584 TGAGGAC-TTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
3399611 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
* * * * *
3399638 TGTGGACTTTAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGATGCCACTGACT
3399666 TGTGG
1 TGTGG
3399671 ACTTAAAAGG
Statistics
Matches: 514, Mismatches: 86, Indels: 38
0.81 0.13 0.06
Matches are distributed among these distances:
26 7 0.01
27 114 0.22
28 331 0.64
29 36 0.07
30 15 0.03
31 1 0.00
32 10 0.02
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACTGACT
Found at i:3399562 original size:82 final size:82
Alignment explanation
Indices: 3399289--3400062 Score: 597
Period size: 82 Copynumber: 9.4 Consensus size: 82
3399279 ATGGGCTTTG
* * *
3399289 AAAGGATGCCACTAACTTGTGG-CTATGAAA-AAGTGCCACTAACTTGTGGGCTATGAAAAGG-T
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGA-TGCCACTAACTTGTGGACT-T-AAAAGGTT
* * * *
3399351 GCCACTGACTTTTGGGCTTGGA
63 GCCACGGAGTTGTGGACTT--A
* ** * * * *
3399373 AAA-GATGCCACTGACTTGTGGGTTTTGAAAGGGTGCCACTGA-TTCGTGGGCTTTGAAAAGGAT
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTT-GTGGAC-TT-AAAAGGTT
* *
3399436 GCCACTGACTTGT-GAGCTTTA
63 GCCACGGAGTTGTGGA-C-TTA
* * * * *
3399457 AAATGATGCCACTGACTTATGGGCTTTGAAATGATGCCACTAACTTGTGGACTTAAAAAGG-TGC
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTT-AAAAGGTTGC
3399521 CACGGAGTTGTGGACTTA
65 CACGGAGTTGTGGACTTA
* * * * *
3399539 AAATGATGCCACTAACTTGTGGGCTTTGAAATGATGCCACTAACTTGAGGACTTAAAAGGGTGCC
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTTAAAAGGTTGCC
*
3399604 ACAGAGTTGTGGACTTA
66 ACGGAGTTGTGGACTTA
* ** * * * * *
3399621 AAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTGCCAC-AGAGTTGTGGACTTAAAAGGTTAC
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTA-ACTTGTGGACTTAAAAGGTTGC
*
3399685 CACGAAGTTGTGGACTTA
65 CACGGAGTTGTGGACTTA
* * * * ** *
3399703 AAAGGATGCCA-TGAAGTTGTGGAC-TTAAAAGGTTGCTACGGAGTTGTGGACTTAAAAGGTTGC
1 AAAGGATGCCACT-AACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTTAAAAGGTTGC
* *
3399766 CATGGAGTTATGGACCTTA
65 CACGGAGTTGTGGA-CTTA
* ** * ** * * *
3399785 AAAGGAATGCCACTAAATCATGGACTTTGAAAGGGTGCCACGGAGTTGTGGACTTAAAGGGTTAC
1 AAAGG-ATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTTAAAAGGTTGC
* **
3399850 TACAAAGTTGTGGACTTA
65 CACGGAGTTGTGGACTTA
* * * *
3399868 AAAGCATGCCACGAAGTTGTGGACTTTAAAAGGATGCCA-TAGAGC-TGTGGACTTCAAAAGG-T
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTA-A-CTTGTGGACTT-AAAAGGTT
* *
3399930 GCCATGGAGCTGTGGACTTA
63 GCCACGGAGTTGTGGACTTA
** * * * * ** *
3399950 AAAGGATGCCACGGAGTTATGGAC-TTAAAAGGTTGCCACGGAGTTGTGGACTTAAAAGGTTGCC
1 AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTTAAAAGGTTGCC
*
3400014 ATGGAGTTGTGGACTTAA
66 ACGGAGTTGTGGACTT-A
*
3400032 AAAGGAATGCCACTAAATT-TGGACTTTGAAA
1 AAAGG-ATGCCACTAACTTGTGGACTTTGAAA
3400063 AGGTTACACT
Statistics
Matches: 575, Mismatches: 88, Indels: 55
0.80 0.12 0.08
Matches are distributed among these distances:
80 6 0.01
81 94 0.16
82 253 0.44
83 74 0.13
84 90 0.16
85 54 0.09
86 4 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (82 bp):
AAAGGATGCCACTAACTTGTGGACTTTGAAAGGATGCCACTAACTTGTGGACTTAAAAGGTTGCC
ACGGAGTTGTGGACTTA
Found at i:3399617 original size:27 final size:27
Alignment explanation
Indices: 3399428--3400044 Score: 538
Period size: 27 Copynumber: 22.5 Consensus size: 27
3399418 GTGGGCTTTG
* *
3399428 AAAAGGATGCCACTGACTTGT-GAGCTTT
1 AAAAGGATGCCACGGAGTTGTGGA-C-TT
* * * * *
3399456 AAAATGATGCCACTGACTTATGGGCTTT
1 AAAAGGATGCCACGGAGTTGTGGAC-TT
* * ** *
3399484 GAAATGATGCCACTAACTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
3399511 AAAAAGG-TGCCACGGAGTTGTGGACTT
1 -AAAAGGATGCCACGGAGTTGTGGACTT
* ** * *
3399538 AAAATGATGCCACTAACTTGTGGGCTTT
1 AAAAGGATGCCACGGAGTTGTGGAC-TT
* * ** * *
3399566 GAAATGATGCCACTAACTTGAGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3399593 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
*
3399620 AAAAGGGTGCCACGGAGTTGTGGACTTT
1 AAAAGGATGCCACGGAGTTGTGGAC-TT
* *
3399648 AAAAGGGTGCCACAGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* * *
3399675 AAAAGGTTACCACGAAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3399702 AAAAGGATGCCATGAAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3399729 AAAAGGTTGCTACGGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* * *
3399756 AAAAGGTTGCCATGGAGTTATGGACCTT
1 AAAAGGATGCCACGGAGTTGTGGA-CTT
** * **
3399784 AAAAGGAATGCCACTAAATCATGGACTTT
1 AAAAGG-ATGCCACGGAGTTGTGGAC-TT
* *
3399813 GAAAGGGTGCCACGGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* * * * **
3399840 AAAGGGTTACTACAAAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3399867 AAAAGCATGCCACGAAGTTGTGGACTTT
1 AAAAGGATGCCACGGAGTTGTGGAC-TT
** *
3399895 AAAAGGATGCCATAGAGCTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3399922 CAAAAGG-TGCCATGGAGCTGTGGACTT
1 -AAAAGGATGCCACGGAGTTGTGGACTT
*
3399949 AAAAGGATGCCACGGAGTTATGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
*
3399976 AAAAGGTTGCCACGGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
* *
3400003 AAAAGGTTGCCATGGAGTTGTGGACTT
1 AAAAGGATGCCACGGAGTTGTGGACTT
3400030 AAAAAGGAATGCCAC
1 -AAAAGG-ATGCCAC
3400045 TAAATTTGGA
Statistics
Matches: 493, Mismatches: 83, Indels: 25
0.82 0.14 0.04
Matches are distributed among these distances:
26 11 0.02
27 302 0.61
28 155 0.31
29 25 0.05
ACGTcount: A:0.30, C:0.15, G:0.29, T:0.26
Consensus pattern (27 bp):
AAAAGGATGCCACGGAGTTGTGGACTT
Found at i:3399815 original size:247 final size:245
Alignment explanation
Indices: 3399501--3400062 Score: 763
Period size: 247 Copynumber: 2.3 Consensus size: 245
3399491 TGCCACTAAC
* * * * *
3399501 TTGTGGACTTAAAAAGG-TGCCACGGAGTTGTGGACTTAAAATG-ATGCCACTAACTTGTGGGCT
1 TTGTGGACTT-AAAAGGTTGCCATGGAGTTGTGGACTTAAAAGGAATGCCACTAA-ATATGGACT
* * * * **
3399564 TTGAAATGATGCCACTAACTTGAGGACTTAAAAGGG-TGCCACAGAGTTGTGGACTTAAAAGGGT
64 TTGAAAGGATGCCACGAACTTGAGGACTT-AAAGGGTTACCACAAAGTTGTGGACTTAAAAGCAT
* * *
3399628 GCCACGGAGTTGTGGACTTTAAAAGGGTGCCACAGAGTTGTGGACTT-AAAAGGTTACCACGAAG
128 GCCACGAAGTTGTGGACTTTAAAAGGATGCCACAGAGCTGTGGACTTCAAAAGG-TACCACGAAG
* * * *
3399692 TTGTGGACTTAAAAGGATGCCATGAAGTTGTGGACTTAAAAGGTTGCTACGGAG
192 CTGTGGACTTAAAAGGATGCCACGAAGTTATGGACTTAAAAGGTTGCCACGGAG
*
3399746 TTGTGGACTTAAAAGGTTGCCATGGAGTTATGGACCTTAAAAGGAATGCCACTAAATCATGGACT
1 TTGTGGACTTAAAAGGTTGCCATGGAGTTGTGGA-CTTAAAAGGAATGCCACTAAAT-ATGGACT
* * * * *
3399811 TTGAAAGGGTGCCACGGAGTTGTGGACTTAAAGGGTTACTACAAAGTTGTGGACTTAAAAGCATG
64 TTGAAAGGATGCCACGAACTTGAGGACTTAAAGGGTTACCACAAAGTTGTGGACTTAAAAGCATG
* * * *
3399876 CCACGAAGTTGTGGACTTTAAAAGGATGCCATAGAGCTGTGGACTTCAAAAGGTGCCATGGAGCT
129 CCACGAAGTTGTGGACTTTAAAAGGATGCCACAGAGCTGTGGACTTCAAAAGGTACCACGAAGCT
*
3399941 GTGGACTTAAAAGGATGCCACGGAGTTATGGACTTAAAAGGTTGCCACGGAG
194 GTGGACTTAAAAGGATGCCACGAAGTTATGGACTTAAAAGGTTGCCACGGAG
*
3399993 TTGTGGACTTAAAAGGTTGCCATGGAGTTGTGGACTTAAAAAGGAATGCCACTAAATTTGGACTT
1 TTGTGGACTTAAAAGGTTGCCATGGAGTTGTGGACTT-AAAAGGAATGCCACTAAATATGGACTT
3400058 TGAAA
65 TGAAA
3400063 AGGTTACACT
Statistics
Matches: 279, Mismatches: 31, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
244 6 0.02
245 25 0.09
246 30 0.11
247 212 0.76
248 6 0.02
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (245 bp):
TTGTGGACTTAAAAGGTTGCCATGGAGTTGTGGACTTAAAAGGAATGCCACTAAATATGGACTTT
GAAAGGATGCCACGAACTTGAGGACTTAAAGGGTTACCACAAAGTTGTGGACTTAAAAGCATGCC
ACGAAGTTGTGGACTTTAAAAGGATGCCACAGAGCTGTGGACTTCAAAAGGTACCACGAAGCTGT
GGACTTAAAAGGATGCCACGAAGTTATGGACTTAAAAGGTTGCCACGGAG
Found at i:3403567 original size:476 final size:476
Alignment explanation
Indices: 3402668--3408227 Score: 7243
Period size: 476 Copynumber: 11.7 Consensus size: 476
3402658 GTGTCTACAA
* * * *
3402668 TGTTTATAGTATCTAATCACAAAATGAATGAGGATCACTACTAGAATCCATGTTTGTCCCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
3402733 AGGCAAGAACTTATACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCATC
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
* *
3402798 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGTATGAAGATTA
131 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTA
* * *
3402863 GTATGACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTAATTCTATCAAAAATGGTGGAAAG
196 GTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAAAG
** *
3402928 AAAAGAATTTCTTGCAACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG
261 AAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG
* *
3402993 GTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATGGATGCTAGTCTTATTTATAGGATGA
326 GTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGA
* * * *
3403058 ACTTCGATTTTAAGGAAAATAGGACAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCA
391 ACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCG
3403123 TTTATCCTAATGAGGAGAATG
456 TTTATCCTAATGAGGAGAATG
*
3403144 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCACTACTAGAATCCATGTTTGTCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
*
3403209 AGACAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
* * *
3403274 AATATCATCTATCCTAATGAGAAGACTTTGTTTATGGTG-CTCAATCCTGAAAGGAATGAGGATT
131 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCT-AATCCAGAAAAGAATGAGGATT
* * * * * *
3403338 AGTATGACAATTCTTGTTTGTCTCTTTTAAGGGACGAACTTTGATTCTATCAAAAACGATGGAAA
195 AGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAAA
* * *
3403403 GAAAAGCATTGCTTGCAACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTT
260 GAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTT
* *
3403468 GGTTCCAAATCTTGAAAAGAATGGAGACTTTTACAAGAATTGATGCTAGTCTTATTTATGGGATG
325 GGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATG
* * * *
3403533 AAGTTTGATTTTAAGGAAAATAGGGTATGGAAAAGA-TTCTGATGCAAAGGAAAATCATCAATAT
390 AACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTC-GATGCAAAAGAAAATCATCAATAT
*
3403597 CGTTTATCCTAATGAAGAGAATG
454 CGTTTATCCTAATGAGGAGAATG
* * * * * *
3403620 TGTTTATAGTGTCTAATAACAAAATGAATGAGGATCACTACTAAAATCCATGTTTGACTCATATG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * *
3403685 AGTCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATGGAGAAGCCAAAGCATC
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
* * * * *
3403750 AATATCGTATATCTTAATGAG-AGAATTTTGTTTATGGTGCCTAATCCAAAAAAGCATGAGGATT
131 AATATCGTCTATCCTAATGAGAAG-ACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATT
* * *
3403814 AGTATGACTATTCTTGTTTGTCTCCTTTGAGGAACAAACTTTGATTCTATCAAAAATGGTGGAAA
195 AGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAAA
* *
3403879 GAAAAGCTTTTCTTACGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGATTGTGTTTTT
260 GAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTT
* ** * * ** * *
3403944 GGTTCCGAATCTTGAAATCAAAGGAGACTGTTACGATCATTGATGCTAGTGTTATTTATGGGTTG
325 GGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATG
* * *
3404009 AACTTTGATTTTAAGGAAAATAGTGCAAAGAAAAGATTTTC-ATGCAAAAGAAAATCATTAATAT
390 AACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGA-TTTCGATGCAAAAGAAAATCATCAATAT
* * * *
3404073 GGTTTATCCTAAAGAAGAGAATA
454 CGTTTATCCTAATGAGGAGAATG
* *
3404096 TGTTTATAGTGTCTAATCACAAAATGAACAAGGATCATTACTAGAATCCATGTTTGCCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
3404161 AGGCACGAACTTAGACTTTACAAAACTTGGTGGAAAGAAAGCCTTTCTT-ACGAAACCAAAACCT
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGA-GAAACCAAAGCAT
* * * ** * * * ** * *
3404225 CAATATAGTGTGT-CTTTTGGAGAAGACTATATTTATAGCACCTAATCCTGAAAATAATGAGGAT
130 CAATATCGTCTATCCTAAT-GAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * * * * *
3404289 CAATATGACTCTTCATGTTTGTC-CCTTTTGAGGTATGAACTTTGATTCTACCAAAAATAGTGGA
194 TAGTATGACTATTCATGTTTGTCTCC-TTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGA
* * ** *
3404353 AAGAAAAGCTTTTCTTGCGACACTAAATCATCAATGTCATGCATCCTACTGAAGGGAAAGTGTTT
258 AAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTT
* * * * * * * **
3404418 TAGGTTTCGAATCTAGAAAAGAATGGAGACTATGATGAGAATCAATGCTAGTCTTATTTATGGGA
323 TTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGA
* * * * * ** *
3404483 TAAACTTCGATTTTAAGGAAAATAGGGCAGGGGAAAGATTTCCATGCAATTGAAAATCATCAGTA
388 TGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATA
*
3404548 TAGTTTATCCTAATGAGGAGAATG
453 TCGTTTATCCTAATGAGGAGAATG
* * * *
3404572 TTTTTATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTATCTCTTTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * * *
3404637 AGGCACA-AAATTGGACTTTACAAAAATTGGGGGGAAGAAAGCCCTTT-TTGAGAAGCTAAAGCG
66 AGGCA-AGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG-CCTTTATTGAGAAACCAAAGCA
* * *
3404700 TCAATATCGTCTATCCTAATAAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAATGAGGAT
129 TCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * * **
3404765 TAGTATGACTATTCATGTTTGTCTCCTTTTAGGGACAAACATTGATTTTATCAAAACCGG-GGAA
194 TAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGG-A
** * * * *
3404829 AAGAAAAGCTTTTCTTGTTATACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAATGTGTTT
258 AAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTT
* * * * * * *
3404894 TTGGTTCCAAACCTTGAAAAGAATGGAGACTATTAGGAGAATGGATGCTATTCTAATTTATGGGA
323 TTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGA
* * * * * * *
3404959 TAAACTTTGATTTTAAGGAAAATATGGCGAGGAAAAAATTTTGACGCAAAAGAAAATCATCGATA
388 TGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATA
* * * *
3405024 TCATTTATCTTAATGGGGAGAATC
453 TCGTTTATCCTAATGAGGAGAATG
* * * **
3405048 TGTTTGTAGTGTGTAATCACAAAATGAATGAGGATTTTTACTAGAATCCATGTTTGTCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * * * **
3405113 AAG-AATGAACTTAAACTTTACAAAAATTGGTGGAAAGAAAGCCTTTCTT-ACGAAACCAAAGTG
66 AGGCAA-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGA-GAAACCAAAGCA
* * * *
3405176 TCAATATCGTGTATCCTAAGGAGAAGACTTTGTTTATGGTGCCTAATCCCGAAAAGAATGAGGAC
129 TCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * * *
3405241 TAGGATGACTATACATGTTTGTCTCCTTTTAGGGATGAACGTTGATTCTATCAAAAATGGTGGAA
194 TAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAA
* * * * *
3405306 AGAAAAGCTTTTCTTACAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGATTGTGTTTT
259 AGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTT
** *
3405371 TGGTTCCCAATCTTGAAAAGAATGGAGACTACTACGAGAATTAATGCTAGTCTTATTTATGGGAT
324 TGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGAT
* * * * * * *
3405436 GAACTTTGACTTAAAGGAAAATAGGGCAAGGGAAATATTTCGATGCAAAAGAAAATCATTAGTAC
389 GAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATAT
* *
3405501 CGTTTATCCTATTGAGGAGAATT
454 CGTTTATCCTAATGAGGAGAATG
* * *
3405524 TTTTTATAGTGTCTAATCACAAAATGAATGAA-GATCAATT-CTAGAATCCAAGTTTGTCTCTTT
1 TGTTTATAGTGTCTAATCACAAAATGAAT-AAGGATC-ATTACTAGAATCCATGTTTGTCTC-AT
* * * * * * *
3405587 TTGAGGCATGAAGTTAAAATTTATAAAAATTGGTGGGAAAAAAGCCTTTATTGA-AAAGCTAAAG
63 TTGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAA-CCAAAG
* *
3405651 CAGCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAAT-CAGGAAAAGTATGAG
127 CATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCA-GAAAAGAATGAG
* * * * *
3405715 GATTAGTATGACTATTCATGTTTGTCTCTTTTGAGGGATGAACTTTGAATCTATGAAAAACGGTG
191 GATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTG
* *
3405780 GAAGGAAAAGCTTTTCTTGCAACACCAAATCATCAATGTCATGTATTCCTAAAGAAGGGAATGTG
256 GAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTA-TCCTAAAGAAGGGAATGTG
*
3405845 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATGGATGCTAGTCTTATTTATG
320 TTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATG
* ** * *
3405910 GGATAAACTTCAATTTTAAGGAAAATAGGGCAAAGAAAATATTTCGATGCAAAAGAAAATCATCA
385 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCA
*
3405975 ATATCATTTATCCTAATGAGGAGAATG
450 ATATCGTTTATCCTAATGAGGAGAATG
* * *
3406002 TGTTTATAGTGTCTAATCACAAAATGAATGAGGATCACTACTAAAATCCATGTTTGTCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* ** * * * *
3406067 AGGTAAGAACTTAGACTTTACAAAAATTTATAGGAAGGAAGCTTTTATTGAGAAGCCAAAGCATC
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
* *
3406132 AATATCGTCTATCCTAATGAGAAAACTTTGTTTATGGTGCCTAATCGAGAAAAGAATGAGGATTA
131 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTA
* * * * *
3406197 ATATGACTATTCATGTTTGTCTCCTCTAAGGGACGAACTTTCATTCTAACAAAAATGGTGGAAAG
196 GTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAAAG
* * * * * *
3406262 AAAAGCATTGCGTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAAGAAATGTATTTTTG
261 AAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG
* * *
3406327 GCTCCCAATCTTGAAAAGAAAGGAAACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGA
326 GTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGA
* * * * *
3406392 GCTTTGATTTTATGGAAAATAGGGCAAGGAAAAGATTTCGACGCAAAAGAAATTCAACAATATCG
391 ACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCG
3406457 TTTATCCTAATGAGGAGAATG
456 TTTATCCTAATGAGGAGAATG
* * * * * *
3406478 TGTTTGTATTGTCTAATCACAAAATGAATGAGGATCTTTACTAGAATCCTTATTTGTCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* * *
3406543 AGGCACA-AACTCAGATTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-ACGAAACCAAAGCA
66 AGGCA-AGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGA-GAAACCAAAGCA
* * * * * * * * *
3406606 TTAATATCGTGTATCTTTATGAG-AGAAATATGTTTATAGCGCCTAATCCTA-AAAAGATTGAGG
129 TCAATATCGTCTATCCTAATGAGAAG-ACTTTGTTTATGGTGCCTAATCC-AGAAAAGAATGAGG
* * * ** * *
3406669 ATTAGTATGACTATTCTTGCTTGTCTCCTTTGAGGGACAAAGATTGATTCGATCAAAAATAGTGG
192 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGG
* * * * * * **
3406734 AAAGAAAAGCTTTTCTTGTGACCCCAAATCATCAATGTCATATGTCTTAAGGAA-GGAATGTCCT
257 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTT
* ** * * * *
3406798 TTTCGTTCTGAATCTGGAAAAGAATGGAGACTGTTATGAGAATCGATGCTAGTCTTATTTATGGG
322 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGG
* * * * *
3406863 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGGAAAGATTTCCATTCAAAAAAAAATCATCAGT
387 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAAT
* *
3406928 ATCATTTATCCTAAAGAGGAGAATG
452 ATCGTTTATCCTAATGAGGAGAATG
* * * *
3406953 TTTTTATAGTGTCTAATCACAAAATGAATGAA-GATCATTTCTAGAATCTATGTTTGTCTGATTT
1 TGTTTATAGTGTCTAATCACAAAATGAAT-AAGGATCATTACTAGAATCCATGTTTGTCTCA-TT
* * * * *
3407017 TGAGGCATGAAGTTATACTTTAAAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAGCCAAAGCA
64 TGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCA
* * *
3407082 TCAATATCGTCTATCCTAATGAGAAAACTTTGTTTATGGTGCCTAATCCAAAAAAGCATGAGGAT
129 TCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* * * *
3407147 TAGTACGACTATTTATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAA
194 TAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAA
*
3407212 AGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGAAATGTGTTTT
259 AGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTT
* * * * *
3407277 CGGTTCCTAATCTTGAAAAGAATGGAAACTTTTACAAGAACTGATGCTAGTCTTATTTATGGGAT
324 TGGTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGAT
* *
3407342 GAACTTTGATTTTAAGAAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATAT
389 GAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATAT
3407407 CGTTTATCCTAATGAGGAGAATG
454 CGTTTATCCTAATGAGGAGAATG
* * * *
3407430 TGCTTATAGTCTCTAATCACAAAATTAATAAGGATCATTACTAGAATCCATGTTTGCCTCATTTG
1 TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
* *
3407495 AGGCATGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
66 AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
3407560 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTA
131 AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTA
*
3407625 GTATGACTATTCATGTTTGTCTCCTTTGAGGGAGGAACTTTGATTCTATCAAAAA-GTGTGGAAA
196 GTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATG-GTGGAAA
* * *
3407689 GAAAAGCATTTCTTGCGACACCAAATCACCAATGTCATGTATCCTAAAGAAGGGAATGTCTTTTT
260 GAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTT
** * ** * *
3407754 GGTTCTGAAT-TTGGAAAA-AATGGAGACTGTTATAAGAATCGATGCTAGTCTTATTTATGAGAT
325 GGTTCCCAATCTT-GAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGAT
* * * * *
3407817 GAACTTTGATTTTAAAGAAAATAGGGCTAGGAAAAGATTTCCATGCAAAA-AAAGATCATCAGTT
389 GAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAA-ATCATCAATA
*
3407881 TCGTTTATCCTAATAAGGAGAATG
453 TCGTTTATCCTAATGAGGAGAATG
* * *
3407905 TTTTTATAGTGTCTAATCACAAAATGAATGAA-GATCATTTCTAGAATCCATGTTTCTCTCATTT
1 TGTTTATAGTGTCTAATCACAAAATGAAT-AAGGATCATTACTAGAATCCATGTTTGTCTCA-TT
* * * * * *
3407969 TGAGGCATGAAGTTAGACTTTATAAAAATTAGTGGGAAGAAAGCCTTTATTGGGAAGCCAAAGCA
64 TGAGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCA
* * * * * *
3408034 TCAATATTGACTATCCTGATAAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGCATGAGCAT
129 TCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGAT
* *
3408099 TAGTATGACTATT-ACTATTTGTCTCCTTTGAGGGACGAACTTTGATTCTATAAAAAATGGTGGA
194 TAGTATGACTATTCA-TGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGA
* * * *
3408163 AAGAAAAGCATTTCTTACGACACCAAATCATCATTGTCAGGTATCCTAAAGAAGGGAATGTGTTT
258 AAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTT
3408228 ATAATATGCG
Statistics
Matches: 4410, Mismatches: 621, Indels: 106
0.86 0.12 0.02
Matches are distributed among these distances:
474 4 0.00
475 386 0.09
476 3183 0.72
477 622 0.14
478 215 0.05
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (476 bp):
TGTTTATAGTGTCTAATCACAAAATGAATAAGGATCATTACTAGAATCCATGTTTGTCTCATTTG
AGGCAAGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTATTGAGAAACCAAAGCATC
AATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCAGAAAAGAATGAGGATTA
GTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAATGGTGGAAAG
AAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTG
GTTCCCAATCTTGAAAAGAATGGAGACTTTTACGAGAATTGATGCTAGTCTTATTTATGGGATGA
ACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAATATCG
TTTATCCTAATGAGGAGAATG
Found at i:3407691 original size:158 final size:158
Alignment explanation
Indices: 3402716--3407692 Score: 867
Period size: 159 Copynumber: 31.4 Consensus size: 158
3402706 TACTAGAATC
* * * * *
3402716 CATGTTTGTCCCATTTGAGGCAAGAACTTAT-ACTT-TA-CAAAAATTGGTGGGAAGAAAGCCTT
1 CATGTTTGTCTCATTTGAGGGATGAACTT-TGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCCTT
* * *
3402778 TATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAAT
63 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
* * *
3402843 CCAGAAAAGTATGAAGATTAGTATGACTATT
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* * **
3402874 CATGTTTGTCTCTTTTGAGGGATGAACTTTAATTCTATCAAAAA-TGGTGGAAAGAAAAGAATTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
* * * * * * * * *
3402938 CTTGCA-ACACCAAATCATCAATGTCATGTATCCTAA--AGAAGGGAATGTGTTTTTGGTTCCCA
64 ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA--GAATGTGTTTATGGTGCCTA
** * ** *
3403000 ATCTTGAAAAGAATG-GAGACTT-TTACGAGAATG
126 ATCCAGAAAAGAATGAG-GA-TTAGTACGACTATT
* * * * * * * *** * **
3403033 GATGCTAGTCTTATTT-ATAGGATGAACTTCGATTTTAAGGAAAA-T-AGGACAAGGAAAAGATT
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCTATCAAAAAGTGTGGA-AA-G-AAAGCCT
** * * * * * *
3403095 TTGA-TGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCT
62 TT-ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCT
* * * * * ** *
3403158 AATCACA-AAATGAATAAGGATCACTACTAGAATC
125 AATC-CAGAAAAGAATGAGGATTAGTACGACTATT
** * * * *
3403192 CATGTTTGTCTCATTTGAGACAAGAACTTAGACTT-TA-CAAAAATTGGTGGGAAGAAAGCCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCCTTT
* * *
3403255 ATTGAGAAACCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTATGGTG-CTCAAT
64 ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCT-AAT
* * * *
3403319 CCTGAAAGGAATGAGGATTAGTATGACAATT
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* * * * * * *
3403350 CTTGTTTGTCTCTTTTAAGGGACGAACTTTGATTCTATCAAAAACG-ATGGAAAGAAAAGCATTG
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAA-GTGTGGAAAG-AAAGCCTTT
* * * * * * * * *
3403414 CTTGCA-ACACCAAATCATCAATGTCATGTATCCTAA--AGAAGGGAATGTGTTTTTGGTTCCAA
64 ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA--GAATGTGTTTATGGTGCCTA
** * * **
3403476 ATCTTGAAAAGAATG-GAGACTT-TTACAAGAATT
126 ATCCAGAAAAGAATGAG-GA-TTAGTACGACTATT
* * * * * * ** * * **
3403509 GATGCTAGTCTTATTT-ATGGGATGAAGTTTGATTTTAAGGAAAATAGGGTATGGAAA-AGATTC
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCT-ATCAAAA-A--GTGTGGAAAGAAAGCC
* *** * * * *
3403572 -TGA-TGCA-AAGGAAAATCATCAATATCGTTTATCCTAATGA-AGAGAATGTGTTTATAGTGTC
61 TTTATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGA-AGAATGTGTTTATGGTGCC
* * * * * ** *
3403633 TAATAACA-AAATGAATGAGGATCACTACTAAAATC
124 TAAT-CCAGAAAAGAATGAGGATTAGTACGACTATT
* * ** * * * *
3403668 CATGTTTGACTCATATGAGTCACGAACTTAGACTT-TA-CAAAAATTGGTGGGAAGAAAGCCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCCTTT
* * * * *
3403731 ATGGAGAAGCCAAAGCATCAATATCGTATATCTTAATGAG-AGAATTTTGTTTATGGTGCCTAAT
64 ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAAT
* * *
3403795 CCAAAAAAGCATGAGGATTAGTATGACTATT
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* * * ** *
3403826 CTTGTTTGTCTCCTTTGAGGAACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
* * * * * * * * * *
3403890 CTT-ACGACACCAAATCATCAATGTCATGTATCCTAA--AGAAGGGATTGTGTTTTTGGTTCCGA
64 ATTGA-GAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA--GAATGTGTTTATGGTGCCTA
** * *
3403952 ATCTTGAAATCA-AAGGA-GACT-GTTACGA-TCATT
126 ATCCAGAAA--AGAATGAGGATTAG-TACGACT-ATT
* * * * * * * *** * **
3403985 GATGCTAGTGTTATTT-ATGGGTTGAACTTTGATTTTAAGGAAAA-TAGTGCAAAGAAAAGATTT
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTT
** * * * * * * * *
3404048 TCA-TGCA-AAAGAAAATCATTAATATGGTTTATCCTAAAGA-AGAGAATATGTTTATAGTGTCT
63 T-ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGA-AGAATGTGTTTATGGTGCCT
* ** * * * ** *
3404110 AATCACA-AAATGAACAAGGATCATTACTAGAATC
125 AATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * * **
3404144 CATGTTTGCCTCATTTGAGGCACGAACTTAGACTT-TA-CAAAACTTGGTGGAAAGAAAGCCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCCTTT
* * * * * * ** * * * * **
3404207 CTT-ACGAAACCAAAACCTCAATATAGTGTGT-CTTTTGGAGAAGACTATATTTATAGCACCTAA
64 ATTGA-GAAACCAAAGCATCAATATCGTCTATCCTAAT-GAGAAGAATGTGTTTATGGTGCCTAA
* * * * * *
3404270 TCCTGAAAATAATGAGGATCAATATGACTCTT
127 TCCAGAAAAGAATGAGGATTAGTACGACTATT
* * * * *
3404302 CATGTTTGTCCCTTTTGAGGTATGAACTTTGATTCTACCAAAAA-TAGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
* * * * * * * * * * ** *
3404366 CTTGCGACACTAAATCATCAATGTCATGC-ATCCTACTGA-AGGGAAAGTGTTT-TAGGTTTCGA
64 ATTGAGAAACCAAAGCATCAATATCGT-CTATCCTAATGAGA-AGAATGTGTTTAT-GGTGCCTA
* * * * *
3404428 ATCTAGAAAAGAATG-GAGACTA-TGATGA-GAAT
126 ATCCAGAAAAGAATGAG-GATTAGT-ACGACTATT
* * * * * * ** * ** *
3404460 CAATGCTAGTCTTATTT-ATGGGATAAACTTCGATTTTAAGGAAAATAG-G-GCAGGGGAAAG-A
1 C-ATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCT-ATCAAAA-AGTGTGGA-AAGAAAGCC
**** * * * * * * * *
3404521 TTTCCA-TGCA-ATTGAAAATCATCAGTATAGTTTATCCTAATGAGGAGAATGTTTTTATAGTGT
61 TTT--ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGC
* * * * ** *
3404584 CTAATCACA-AAATGAATGAGGATCATTACTAGAATC
123 CTAATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * ** * * * * *
3404620 CATGTTTATCTCTTTTGAGGCACAAAATTGGACTT-TA-CAAAAATTGGGGGGAAGAAAGCCCTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGT-GTGGAAAGAAAG-CCTT
* * * * * *
3404683 T-TTGAGAAGCTAAAGCGTCAATATCGTCTATCCTAATAAGAAGACTTTGTTTATGGTGCCTAAT
63 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
* * *
3404747 CCTGAAAAAAATGAGGATTAGTATGACTATT
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* * ** * * * *
3404778 CATGTTTGTCTCCTTTTAGGGACAAACATTGATTTTATCAAAACCG-G-GGAAAAGAAAAGCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAA-AGTGTGG-AAAG-AAAGCCTT
* ** * ** * * * * *
3404841 TCTTGTTATACCAAAGCATCAATGCCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCC-AA
63 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAA
* * * * * ** *
3404904 ACCTTGAAAAGAATG-GAGACTATTAGGAGAATG
127 TCC-AGAAAAGAATGAG-GATTAGTACGACTATT
* * * * * *** * * * ***
3404937 GATGCTAT-TCTAATTT-ATGGGATAAACTTTGATTTTAAGGAAAA-TATGGCGAGGAAA-AAAT
1 CATG-TTTGTCTCATTTGA-GGGATGAACTTTGATTCTATCAAAAAGTGTGG-AAAGAAAGCCTT
** * * * * * * * * * * **
3404998 T-TTGACGCAAAAGAAAATCATCGATATCATTTATCTTAATGGGGAGAATCTGTTTGTAGTGTGT
63 TATTGA-G--AAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCT
* ** * ** *
3405062 AATCACA-AAATGAATGAGGATTTTTACTAGAATC
125 AATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * ** *
3405096 CATGTTTGTCTCATTTGAAGAATGAACTTAAACTT-TA-CAAAAATTGGTGGAAAGAAAGCCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCCTTT
* ** * * * *
3405159 CTT-ACGAAACCAAAGTGTCAATATCGTGTATCCTAAGGAGAAGACTTTGTTTATGGTGCCTAAT
64 ATTGA-GAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
* * * * *
3405223 CCCGAAAAGAATGAGGACTAGGATGACTATA
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* * * *
3405254 CATGTTTGTCTCCTTTTAGGGATGAACGTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
* * * * * * * * * *
3405318 CTT-ACAACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGATTGTGTTTTTGGTTCCCAA
64 ATTGAGAA-ACCAAAGCATCAATATCGTCTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAA
** * * **
3405381 TCTTGAAAAGAATG-GAGACTACTACGAGAATT
127 TCCAGAAAAGAATGAG-GATTAGTACGACTATT
* * * * ** ** * * **
3405413 AATGCTAGTCTTATTT-ATGGGATGAACTTTGACTTAAAGGAAAATAG-G-GCAAGGGAAA-TAT
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGA-TTCTATCAAAA-AGTGTGGAA-AGAAAGCCT
** * * * * * * * * * * *
3405474 TTCGA-TGCA-AAAGAAAATCATTAGTACCGTTTATCCTATTGAGGAGAATTTTTTTATAGTGTC
62 TT--ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCC
* * * * * * ** *
3405537 TAATCACA-AAATGAATGAAGATCAATTCTAGAATC
124 TAATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * * ** *
3405572 CAAGTTTGTCTCTTTTTGAGGCATGAAGTTAAAATT-TAT-AAAAATTGGTGGGAAA-AAAGCCT
1 CATGTTTGTCTC-ATTTGAGGGATGAACTT-TGATTCTATCAAAAAGT-GT-GGAAAGAAAGCCT
* * * *
3405634 TTATTGA-AAAGCTAAAGCAGCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTA
62 TTATTGAGAAA-CCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTA
* *
3405698 AT-CAGGAAAAGTATGAGGATTAGTATGACTATT
126 ATCCA-GAAAAGAATGAGGATTAGTACGACTATT
* * * * *
3405731 CATGTTTGTCTCTTTTGAGGGATGAACTTTGAATCTATGAAAAACG-GTGGAAGGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAA-GTGTGGAAAG-AAAGCCTTT
* * * * * * * * *
3405795 CTTGCA-ACACCAAATCATCAATGTCATGTATTCCTAA--AGAAGGGAATGTGTTTTTGGTTCCC
64 ATTG-AGAAACCAAAGCATCAATATCGTCTA-TCCTAATGAGAA--GAATGTGTTTATGGTGCCT
** * ** *
3405857 AATCTTGAAAAGAATG-GAGACTT-TTACGAGAATG
125 AATCCAGAAAAGAATGAG-GA-TTAGTACGACTATT
* * * * * ** * ** * ***
3405891 GATGCTAGTCTTATTT-ATGGGATAAACTTCAATTTTAAGGAAAATAG-G-GCAAAGAAAATATT
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCT-ATCAAAA-AGTGTGGAAAGAAAGCCTT
** * * * * * *
3405953 TCGA-TGCA-AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCT
63 T--ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCT
* * * * ** *
3406016 AATCACA-AAATGAATGAGGATCACTACTAAAATC
125 AATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * * * * *
3406050 CATGTTTGTCTCATTTGAGGTAAGAACTTAGACTT-TA-CAAAAATTTATAGG-AAGGAAGCTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAA-GTGT-GGAAAGAAAGCCTT
* *
3406112 TATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAA-AACTTTGTTTATGGTGCCTAA
63 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCTAA
* * *
3406176 TCGAGAAAAGAATGAGGATTAATATGACTATT
127 TCCAGAAAAGAATGAGGATTAGTACGACTATT
* * * * * * * *
3406208 CATGTTTGTCTCCTCTAAGGGACGAACTTTCATTCTAACAAAAA-TGGTGGAAAGAAAAGCATTG
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
** * * * * * * * * * *
3406272 CGTGCGACACCAAATCATCAATGTCATGTATCCTAAAGA-AAGAAATGTATTTTTGGCT-CCCAA
64 ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAG-AATGTGTTTATGG-TGCCTAA
** * **
3406335 TCTTGAAAAGAA--AGGAAACTT-TTACGAGAATT
127 TCCAGAAAAGAATGAGG--A-TTAGTACGACTATT
* * * * * * * * * *
3406367 GATGCTAGTCTTATTT-ATGGGATGAGCTTTGATTTTATGGAAAATAG-G-GCAAGGAAAAG--A
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCTAT-CAAAA-AGTGTGGAAAG-AAAGCCT
* ** * * * * * ** *
3406427 TT-TCGACGCAAAAGAAATTCAACAATATCGTTTATCCTAATGAGGAGAATGTGTTTGTATTGTC
62 TTATTGA-G-AAACCAAA-GCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCC
* * * ** *
3406491 TAATCACA-AAATGAATGAGGATCT-TTACTAGAATC
124 TAATC-CAGAAAAGAATGAGGAT-TAGTACGACTATT
* * * ** ** * * * *
3406526 CTTATTTGTCTCATTTGAGGCACAAACTCAGATTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTC
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAGAAAGCCTTTA
* * * * * * *
3406590 TT-ACGAAACCAAAGCATTAATATCGTGTATCTTTATGAG-AGAAATATGTTTATAGCGCCTAAT
65 TTGA-GAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAG-AATGTGTTTATGGTGCCTAAT
* *
3406653 CCTA-AAAAGATTGAGGATTAGTATGACTATT
128 CC-AGAAAAGAATGAGGATTAGTACGACTATT
* * * ** ** * *
3406684 CTTGCTTGTCTCCTTTGAGGGACAAAGATTGATTCGATCAAAAA-TAGTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGT-GTGGAAAG-AAAGCCTTT
* * ** * * * * * * * * *
3406748 CTTGTGACCCCAAATCATCAATGTCATATGTCTTAA-G-GAAGGAATGTCCTTT-TCGT-TCTGA
64 ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA-GAATGT-GTTTATGGTGCCT-A
** * * * *
3406809 ATCTGGAAAAGAATG-GAGACT-GTTATGA-GAAT
126 ATCCAGAAAAGAATGAG-GATTAG-TACGACTATT
* * * * ** * * *
3406841 CGATGCTAGTCTTATTT-ATGGGATGAACTTTGATTTTAAGGAAAATAG-G-GCAAGGGAAAG-A
1 C-ATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCT-ATCAAAA-AGTGTGGAA-AGAAAGCC
* ** * * * * * * * * *
3406902 TTTCCATTCA-AAAAAAAATCATCAGTATCATTTATCCTAAAGAGGAGAATGTTTTTATAGTGTC
61 TTT--ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCC
* * * * * * * *
3406966 TAATCACA-AAATGAATGAAGATCATTTCTA-GAAT
124 TAATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * * * *
3407000 CTATGTTTGTCTGATTTTGAGGCATGAAGTTAT-ACTT-TA-AAAAAATTGGTGGGAAGAAAGCC
1 C-ATGTTTGTCTCA-TTTGAGGGATGAACTT-TGA-TTCTATCAAAAAGT-GTGGAAAGAAAGCC
* *
3407062 TTTATTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAA-AACTTTGTTTATGGTGCCT
61 TTTATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAA-TGTGTTTATGGTGCCT
* *
3407126 AATCCAAAAAAGCATGAGGATTAGTACGACTATT
125 AATCCAGAAAAGAATGAGGATTAGTACGACTATT
* * *
3407160 TATGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAA-GTGTGGAAAG-AAAGCCTTT
* * * * * * * *
3407224 CTTGCGACACCAAATCATCAATGTCATGTATCCTAA--AGAAGGAAATGTGTTT-TCGGTTCCTA
64 ATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAA-G-AATGTGTTTAT-GGTGCCTA
** * * * ** *
3407286 ATCTTGAAAAGAATG-GAAACTT-TTACAAGAACT
126 ATCCAGAAAAGAATGAG-GA-TTAGTACGACTATT
* * * * * ** * **
3407319 GATGCTAGTCTTATTT-ATGGGATGAACTTTGATTTTAAGAAAAA-TAG-GGCAAGGAAAAGATT
1 CATGTTTGTCTCATTTGA-GGGATGAACTTTGATTCTATCAAAAAGT-GTGG-AAAG-AAAGCCT
** * * * * *
3407381 TTGA-TGCA-AAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGCTTATAGT-CTC
62 TT-ATTG-AGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGC-C
** * * * * ** *
3407443 TAATCACA-AAATTAATAAGGATCATTACTAGAATC
124 TAATC-CAGAAAAGAATGAGGATTAGTACGACTATT
* * * *
3407478 CATGTTTGCCTCATTTGAGGCATGAACTTAGACTT-TA-CAAAAATTG-GTGAGAAGAAAGCCTT
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTCTATCAAAAAGTGTG-GA-AAGAAAGCCTT
* *
3407540 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAAT
63 TATTGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT
*
3407605 CCAGAAAAGAATGAGGATTAGTATGACTATT
128 CCAGAAAAGAATGAGGATTAGTACGACTATT
* *
3407636 CATGTTTGTCTCCTTTGAGGGAGGAACTTTGATTCTATCAAAAAGTGTGGAAAGAAA
1 CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGTGTGGAAAGAAA
3407693 AGCATTTCTT
Statistics
Matches: 3395, Mismatches: 1101, Indels: 646
0.66 0.21 0.13
Matches are distributed among these distances:
154 1 0.00
155 5 0.00
156 12 0.00
157 120 0.04
158 1080 0.32
159 1862 0.55
160 256 0.08
161 50 0.01
162 2 0.00
163 7 0.00
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (158 bp):
CATGTTTGTCTCATTTGAGGGATGAACTTTGATTCTATCAAAAAGTGTGGAAAGAAAGCCTTTAT
TGAGAAACCAAAGCATCAATATCGTCTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCA
GAAAAGAATGAGGATTAGTACGACTATT
Found at i:3409011 original size:13 final size:13
Alignment explanation
Indices: 3408993--3409018 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3408983 CAATTTTTTG
3408993 TGTATCGATACAT
1 TGTATCGATACAT
3409006 TGTATCGATACAT
1 TGTATCGATACAT
3409019 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3411582 original size:13 final size:13
Alignment explanation
Indices: 3411564--3411589 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3411554 ACAATCACCC
3411564 TGTATCGATACAA
1 TGTATCGATACAA
3411577 TGTATCGATACAA
1 TGTATCGATACAA
3411590 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3413690 original size:15 final size:15
Alignment explanation
Indices: 3413670--3413700 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3413660 ATTTCGTTTG
*
3413670 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3413685 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3413700 G
1 G
3413701 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3415533 original size:21 final size:21
Alignment explanation
Indices: 3415504--3415548 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3415494 AAGTTTTCAT
*
3415504 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3415524 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3415546 TTT
1 TTT
3415549 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3417784 original size:13 final size:13
Alignment explanation
Indices: 3417766--3417791 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3417756 CAATTTTTTG
3417766 TGTATCGATACAT
1 TGTATCGATACAT
3417779 TGTATCGATACAT
1 TGTATCGATACAT
3417792 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3420423 original size:951 final size:944
Alignment explanation
Indices: 3418423--3421660 Score: 4019
Period size: 951 Copynumber: 3.4 Consensus size: 944
3418413 TTCTAATGTG
* *
3418423 TTTCTTGCGACACCAAGTTATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
1 TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * *
3418488 ATCTTGAAAACAACGGAGACTTTTACGAGAA-CTGATGCTAGTCTTATTTATGGGATGAAGTTTG
66 ATCTTGAAAAGAATGGAGACTGTTACGAGAATC-GATGCTAGTCTTATTTATGGGATGAACTTTG
* * *
3418552 ATTTTAAGGAAAATAGGGTAAGGAAAAGATTAT-AGTGCAAAAGAAAATCATCAATATCGTTTAT
130 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGA-TGCAAAAGAAAATCATCAATATCATTTAT
** * *** * * **
3418616 TTTAATGAAGAGAATGGGTTTATAGCATCTAATAACAAAATGAATGAGGATCACTGTTAGAATCC
194 CCTAATGAAGAGAATGTGTTTATAATGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCC
* * * *
3418681 ATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAAAATTGGCGGGAAGAAAGCCTTTATT
259 ATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATT
* * *
3418746 GAGAAGCCAAGGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATAGTGCCTAATTCAG
324 GAGAAGCCAAAGCATCAATATCGTCTAT-CTAATGAGAAGACTTTGTTTATGGTGCCTAACT-AG
* * *
3418811 AAAAGCAA-GAGGATTAGTATGACTATTCATGTTTTTCTCCTTTGAGGGATGAACTTTGATTCTA
387 AAAAG-AATGAGGATTAGTGTGACTATTCATGTTTGTCTCCTTTGAGGGAAGAACTTTGATTCTA
* * *
3418875 TCAAAAACGATGGAAAAAAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAA
451 TCAAAAATGATGG-AAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AA
* * * *
3418940 GAAGGGAATATGTTTTCGGTTCCCAATCTTGAAAAGAATGGAGACTTTTATGAGAATTGATGTTA
514 GAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTA
* * *
3419005 GTCTAATTTATGGGATGAACTTTGA-TTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAA
579 GTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAA-AAGGCAAGGAAAAGATTTTGATGCAAA
* * * * *
3419069 AGAAAATTATCAATATCATTTATCGTAATGAGGAGAATGTTTTTATAGTGTCTAA-CTAGAAAAT
643 AGAAAATCATCCATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTATAATC-ACAAAAT
* * * *
3419133 GAATGAAGATCATTTCTAGAATCTATGTTTGTCTCATTTTGAGGCATGCAGTTAGACTTTATAAA
707 GAATGAAGATCA-TTATAGTATCTATGTTTGTCTCA-TTTGAGGCACGAAGTTAGACTTTATAAA
* * *
3419198 AATTGGTGGGAAGAAAGCCTTTATTGGGAAGCCAAAGCATCAATATCGTTTATCCTAATAAGAGG
770 AATTGGTGGGAAGAAAGCCTTTCTT-AGAAGCCAAAGCATCAATATCGTTT-TCCTAATAAGAAG
* *
3419263 ACTTTGTTTATGGTGCCTAATCCAGAAAAGCATGAGGATTAGTATGGCTATTCATGTCTGTCTCC
833 ACTTTGTTTATGGTGCCTAATCCAGAAAAG-ATGAGGATTAGTATGACTATTCATGTATGTCTCC
* * *
3419328 TTTGACGGACGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCT
897 CTTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
3419376 TTTCTTGCGACACCAAATCATCAATGTCATGTAACCTAAAGAAGGGAATGTGTTTTCGATCCCCA
1 TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * *
3419441 ATCTTGAAAAGAATGGAGACAT-TTATGAGAATTGATGCTAGTCTTTTTTATGGGATGAACTTTG
66 ATCTTGAAAAGAATGGAGAC-TGTTACGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTG
* *
3419505 ATTTTAAGGAAACTAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCCATATCATTTATC
130 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * *
3419570 CTAATGAGGAGAATGTGTTTATAATGTTTAATCACAAAACGAACGAGGATCATTGA-TAGTATCT
195 CTAATGAAGAGAATGTGTTTATAATGTCTAATCACAAAATGAATGAGGATCATT-ACTAGAATCC
* * * * *
3419634 ATGTTTGTCTCATTTAAGGCATGAAATTAGACTTTACCAAAATTGGTGAGAAGAAAGCCTATATT
259 ATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATT
*
3419699 GAGAAGCCAAAGCATCAATATCGTGTATACTAATGAGAAGACTTTGTTTATGGTGCCTAACCTAG
324 GAGAAGCCAAAGCATCAATATCGTCTAT-CTAATGAGAAGACTTTGTTTATGGTGCCTAA-CTAG
* *
3419764 ATAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTAT
387 AAAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTCCTTTGAGGGAAGAACTTTGATTCTAT
* * * * *
3419829 TAAAAATGGTGGAAAGAAAAGCTTTTTTTGCGACACAAAAGCATCATTGTCATGTATCCTAATGA
452 CAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA-GA
* * * * * *
3419894 AGAGAATGTGTTTTTGGCTCCC-ATCATGAAAAGAATGAAGGCTATTATGAGAATTGATGGTAGT
516 AGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGT
* *
3419958 CTTTTTTGTGGGATGAACTTTGATTTTAAGGAAAAAAGGTCAAGGAAAAGATTTTGATGCAAAAG
581 CTTATTTATGGGATGAACTTTGATTTTAAGGAAAAAAGG-CAAGGAAAAGATTTTGATGCAAAAG
* * * *
3420023 AAAATCATCCATATCATTTATCCTAATGAGGAGAATGTGTTTATAATGTTTAATCACAAAACGAA
645 AAAATCATCCATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTATAATCACAAAATGAA
* * * * * *
3420088 CGAGGATCATTGATAGTATCTATGTTTGTCTCATTTGAGGTAGGAACTTAGACTTTACAAAAATT
710 TGAAGATCATT-ATAGTATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATT
* ** * * * * *
3420153 GGTGGGAATAAAGCCTTTCTTACGAAGCCAAAGTGTCATTATCATGTTTCTTTATGAGAAGACTT
774 GGTGGGAAGAAAGCCTTTCTTA-GAAGCCAAAGCATCAATATCGT-TTTCCTAATAAGAAGACTT
* * *
3420218 TGTTTATGGTGCCTAATCCAGAAAAGATTGAGGATTTGTATGACTACTCATATATGTCTCCCTTG
837 TGTTTATGGTGCCTAATCCAGAAAAGA-TGAGGATTAGTATGACTATTCATGTATGTCTCCCTTG
3420283 AGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
901 AGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * *
3420327 TTTCCTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGTGAATGTCTTTTTGGGTCCGA
1 TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * *
3420392 AACTGGAAAAGAATGGAGACTGTTATGAGAATCGATGCTAGTCTTATTTATGGGATAAACTTTGA
66 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
* *
3420457 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCG-TGCAAAAGAAAATTATCAATATCATTTATT
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTT-GATGCAAAAGAAAATCATCAATATCATTTATC
* * * * *
3420521 CTAATGAAGAGAATGTTTTTATCATGTCAAATCACAAAATGAATGACGACCATTACTAGAATCCA
195 CTAATGAAGAGAATGTGTTTATAATGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCA
* * *
3420586 TGTTTGTCTCATTTGAGGTACGAAGTTAGACTTTATAAAAATTGGTGAGAAGAAAGCCTTTCTT-
260 TGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATTG
* * * * * * *
3420650 ACGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGAC-TTGTTTATGGCGTCGAATCTTG
325 A-GAAGCCAAAGCATCAATATCGTCTATC-TAATGAGAAGACTTTGTTTATGGTGCCTAA-CTAG
* **
3420714 AAAAGATTGAGGATTAG-GATGACTATTCATGTTTGTCTTTTTTGAGGGAAGAACTTTGATTCTA
387 AAAAGAATGAGGATTAGTG-TGACTATTCATGTTTGTCTCCTTTGAGGGAAGAACTTTGATTCTA
* * * *
3420778 TCAAAAATAACGGAAAGAAAAGCTTTTCTTGCGATACCAAAGCATCAATGTTATGTATCCTAAGA
451 TCAAAAATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAG-
* * * *
3420843 AAGGGAATGTCTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTACGAGAATCGTTGCTAG
515 AAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAG
* * * * *
3420908 TCTTATTTATGGGATGAACTTTGATTTTAAAGAAAATAAAGCAAAGAAAAGATTTTCAAGCAAAA
580 TCTTATTTATGGGATGAACTTTGATTTTAAGGAAAA-AAGGCAAGGAAAAGATTTTGATGCAAAA
* * * *
3420973 AAAAATCAT-CAGTATCATTTATCCTAATGAGAAGAGTGTTTTTATAGTGTATAATCATAAAATG
644 GAAAATCATCCA-TATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTATAATCACAAAATG
* * * * *
3421037 AATGAAAATCATTACCA-TAATCTATGTTTATCTTATTTGAGGCACGAAGTTAGACTTTATGAAA
708 AATGAAGATCATTA-TAGT-ATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAA
* *
3421101 ATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAAA
771 ATTGGTGGGAAGAAAGCCTTTCTT-AGAAGCCAAAGCATCAATATCGT-TTTCCTAATAAGAAGA
* * *
3421166 CTTTGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGACCATTCATGTTTGTC-CC
834 CTTTGTTTATGGTGCCTAATCC-AGAAAAG-ATGAGGATTAGTATGACTATTCATGTATGTCTCC
* * * * * * *
3421229 CTTTAAGAGATGAACATTGATTCGATCAGAAACTGTGGAAAGAAAA-CAT
897 C-TTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-T
* * * * * *
3421278 TTTCTTGCGACACCAAAGCCTCAATGTAATGTATCCTAAGGAAGGGAATATGTTTTTGGTTCTCA
1 TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * * **
3421343 ATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATACTTGGCTTATTTATATGATGAACTTTGA
66 ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
* * * * * *
3421408 TTTTAAGGAAAATAGAGCAAGGAAAAGTTTTTCATGTAAAAAAAAATCATCAATATCGTTTATCC
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCC
* * ** * *
3421473 TAAT-AAGGAGAATATTTTTATTGTGTCTAATCACAAAATAAATGAAGATCATTACTAGAATCCA
196 TAATGAA-GAGAATGTGTTTATAATGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCA
* * * * * * * *
3421537 TATTTATCTCATTTGAGACATGATGTTAAACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTG
260 TGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATTG
* * * ** * * * *
3421602 AAAAGCCAAAGTATTAATATTATCTATTCAAATGTGAAGACTTTGTATATGGTACCTAA
325 AGAAGCCAAAGCATCAATATCGTCTA-TCTAATGAGAAGACTTTGTTTATGGTGCCTAA
3421661 TCCTGAATAT
Statistics
Matches: 1964, Mismatches: 285, Indels: 73
0.85 0.12 0.03
Matches are distributed among these distances:
949 2 0.00
950 163 0.08
951 1188 0.60
952 205 0.10
953 403 0.21
954 3 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (944 bp):
TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
ATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATATCATTTATCC
TAATGAAGAGAATGTGTTTATAATGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCAT
GTTTGTCTCATTTGAGGCACGAAGTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTATTGA
GAAGCCAAAGCATCAATATCGTCTATCTAATGAGAAGACTTTGTTTATGGTGCCTAACTAGAAAA
GAATGAGGATTAGTGTGACTATTCATGTTTGTCTCCTTTGAGGGAAGAACTTTGATTCTATCAAA
AATGATGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAGAAGGGA
ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATTGATGCTAGTCTTAT
TTATGGGATGAACTTTGATTTTAAGGAAAAAAGGCAAGGAAAAGATTTTGATGCAAAAGAAAATC
ATCCATATCATTTATCCTAATGAGGAGAATGTTTTTATAGTGTATAATCACAAAATGAATGAAGA
TCATTATAGTATCTATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGA
AGAAAGCCTTTCTTAGAAGCCAAAGCATCAATATCGTTTTCCTAATAAGAAGACTTTGTTTATGG
TGCCTAATCCAGAAAAGATGAGGATTAGTATGACTATTCATGTATGTCTCCCTTGAGGGACGAAC
TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
Found at i:3421664 original size:476 final size:477
Alignment explanation
Indices: 3418423--3421664 Score: 4012
Period size: 476 Copynumber: 6.8 Consensus size: 477
3418413 TTCTAATGTG
*
3418423 TTTCTTGCGACACC-AAGTTATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCC
1 TTTCTTGCGACACCAAAG-CATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCC
* * * * *
3418487 AATCTTGAAAACAACGGAGACTTTTACGAGAA-CTGATGCTAGTCTTATTTATGGGATGAAGTTT
65 AATCTTGAAAAGAATGGAGACTATTATGAGAATC-GATGCTAGTCTTATTTATGGGATGAACTTT
* * *
3418551 GATTTTAAGGAAAATAGGGTAAGGAAAAGATTAT-AGTGCAAAAGAAAATCATCAATATCGTTTA
129 GATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCA-TGCAAAAGAAAATCATCAATATCATTTA
** * ** ** * * * **
3418615 TTTTAATGAAGAGAATGGGTTTATAGCATCTAATAACAAAATGAATGAGGATCACTGTTAGAATC
193 TCCTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATC
* * * * *
3418680 CATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAAAATTGGCGGGAAGAAAGCCTTTAT
258 TATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTAT
* * *
3418745 TGAGAAGCCAAGGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATAGTGCCTAATTC-
323 TGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCT
* *
3418809 AGAAAAGCAA-GAGGATTAGTATGACTATTCATGTTTTTCTCCTTTGAGGGATGAACTTTGATTC
388 AGAAAAG-AATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTC
* * *
3418873 TATCAAAAACGATGGAAAAAAAAAGCT
452 TATCAAAAATGGTGG-AAAGAAAAGCT
* * *
3418900 TTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGGGAATATGTTTTCGGTTCCCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * *
3418965 ATCTTGAAAAGAATGGAGACTTTTATGAGAATTGATGTTAGTCTAATTTATGGGATGAACTTTGA
66 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
*
3419030 -TTTAAGGAAAATAGGGCAAGGAAAAGA-TTTCGATGCAAAAGAAAATTATCAATATCATTTATC
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTC-ATGCAAAAGAAAATCATCAATATCATTTATC
* * *
3419093 GTAATGAGGAGAATGTTTTTATAGTGTCTAA-CTAGAAAATGAATGAAGATCATTTCTAGAATCT
195 CTAATGAGGAGAATGTTTTTATAGTGTCTAATC-ACAAAATGAATGAAGATCATTACTAGAATCT
* *
3419157 ATGTTTGTCTCATTTTGAGGCATGCAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTAT
259 ATGTTTGTCTCA-TTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTAT
* * * *
3419222 TGGGAAGCCAAAGCATCAATATCGTTTATCCTAATAAGAGGACTTTGTTTATGGTGCCTAATCC-
323 TGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCT
* * * *
3419286 AGAAAAGCATGAGGATTAGTATGGCTATTCATGTCTGTCTCCTTTGACGGACGAACTTTGATTCT
388 AGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
3419351 ATCAAAAATGGTGGAAAGAAAAGCT
453 ATCAAAAATGGTGGAAAGAAAAGCT
* * * * *
3419376 TTTCTTGCGACACCAAATCATCAATGTCATGTAACCTAAAGAAGGGAATGTGTTTTCGATCCCCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* *
3419441 ATCTTGAAAAGAATGGAGAC-ATTTATGAGAATTGATGCTAGTCTTTTTTATGGGATGAACTTTG
66 ATCTTGAAAAGAATGGAGACTA-TTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTG
* * *
3419505 ATTTTAAGGAAACTAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCCATATCATTTATC
130 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * * *
3419570 CTAATGAGGAGAATGTGTTTATAATGTTTAATCACAAAACGAACGAGGATCATTGA-TAGTATCT
195 CTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATT-ACTAGAATCT
* * * ** * *
3419634 ATGTTTGTCTCATTTAAGGCATGAAATTAGACTTTACCAAAATTGGTGAGAAGAAAGCCTATATT
259 ATGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATT
* *
3419699 GAGAAGCCAAAGCATCAATATCGTGTATACTAATGAGAAGACTTTGTTTATGGTGCCTAA-CCTA
324 GAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTA
* *
3419763 GATAAGAATGAGGATTAGTGTGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTA
389 GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTA
*
3419828 TTAAAAATGGTGGAAAGAAAAGCT
454 TCAAAAATGGTGGAAAGAAAAGCT
* * * * * *
3419852 TTTTTTGCGACACAAAAGCATCATTGTCATGTATCCTAATGAAGAGAATGTGTTTTTGGCTCCC-
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * * * * *
3419916 ATCATGAAAAGAATGAAGGCTATTATGAGAATTGATGGTAGTCTTTTTTGTGGGATGAACTTTGA
66 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
* * * *
3419981 TTTTAAGGAAAAAAGGTCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCCATATCATTTATCC
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * * * *
3420046 TAATGAGGAGAATGTGTTTATAATGTTTAATCACAAAACGAACGAGGATCATTGA-TAGTATCTA
196 TAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATT-ACTAGAATCTA
* * * * * *
3420110 TGTTTGTCTCATTTGAGGTAGGAACTTAGACTTTACAAAAATTGGTGGGAATAAAGCCTTTCTT-
260 TGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTG
** * * * * * *
3420174 ACGAAGCCAAAGTGTCATTATCATGTTTCTTTATGAGAAGACTTTGTTTATGGTGCCTAATCC-A
325 A-GAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTA
* * * * * *
3420238 GAAAAGATTGAGGATTTGTATGACTACTCATATATGTCTCCCTTGAGGGACGAACTTTGATTCTA
389 GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTA
*
3420303 TCAAAAACGGTGGAAAGAAAAGCT
454 TCAAAAATGGTGGAAAGAAAAGCT
* * * * * *
3420327 TTTCCTGCGACACCAAATCATCAATGTCATGTATCCTAAAGAAGTGAATGTCTTTTTGGGTCCGA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * *
3420392 AACTGGAAAAGAATGGAGACTGTTATGAGAATCGATGCTAGTCTTATTTATGGGATAAACTTTGA
66 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
* * *
3420457 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCGTGCAAAAGAAAATTATCAATATCATTTATTC
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * *
3420522 TAATGAAGAGAATGTTTTTATCA-TGTCAAATCACAAAATGAATGACGACCATTACTAGAATCCA
196 TAATGAGGAGAATGTTTTTAT-AGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTA
* * *
3420586 TGTTTGTCTCATTTGAGGTACGAAGTTAGACTTTATAAAAATTGGTGAGAAGAAAGCCTTTCTT-
260 TGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTG
* * * * * * * *
3420650 ACGAAACCAAAGCATCAATATCGTGTATCTTTATGAGAAGAC-TTGTTTATGGCGTCGAAT-CTT
325 A-GAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTA
* * ** *
3420713 GAAAAGATTGAGGATTAGGATGACTATTCATGTTTGTCTTTTTTGAGGGAAGAACTTTGATTCTA
389 GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTA
***
3420778 TCAAAAATAACGGAAAGAAAAGCT
454 TCAAAAATGGTGGAAAGAAAAGCT
* * *
3420802 TTTCTTGCGATACCAAAGCATCAATGTTATGTATCCT-AAGAAAGGGAATGTCTTTTTGGTTCCC
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAG-AAGGGAATGTGTTTTTGGTTCCC
* *
3420866 AATCTTGAAAAGAATGGAGACTATTACGAGAATCGTTGCTAGTCTTATTTATGGGATGAACTTTG
65 AATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTG
* ** * * * *
3420931 ATTTTAAAGAAAATAAAGCAAAGAAAAGATTTTCAAGCAAAAAAAAATCATCAGTATCATTTATC
130 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATC
* * * * * * *
3420996 CTAATGAGAAGAGTGTTTTTATAGTGTATAATCATAAAATGAATGAAAATCATTACCATAATCTA
195 CTAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTA
* * * *
3421061 TGTTTATCTTATTTGAGGCACGAAGTTAGACTTTATGAAAATTGGTGGGAAGAAAGCCTTTCTTG
260 TGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTG
* *
3421126 AGAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAAACTTTGTTTATGGTGCCTAATCCTA-
325 AGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTAG
* * * * * * * *
3421190 AAAAGAATGGGGATTAGTATGACCATTCATGTTTGTCCCCTTTAAGAGATGAACATTGATTCGAT
390 AAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTAT
*
3421255 CAGAAACT-GTGGAAAGAAAA-CAT
455 CA-AAAATGGTGGAAAGAAAAGC-T
* * * * *
3421278 TTTCTTGCGACACCAAAGCCTCAATGTAATGTATCCTAAGGAAGGGAATATGTTTTTGGTTCTCA
1 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
* * * * * * **
3421343 ATCTTGAAAAAAATGGAGACTGTTACGAGAATCGATACTTGGCTTATTTATATGATGAACTTTGA
66 ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
* * * * *
3421408 TTTTAAGGAAAATAGAGCAAGGAAAAGTTTTTCATGTAAAAAAAAATCATCAATATCGTTTATCC
131 TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
* * * * *
3421473 TAATAAGGAGAATATTTTTATTGTGTCTAATCACAAAATAAATGAAGATCATTACTAGAATCCAT
196 TAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAT
* * * * * *
3421538 ATTTATCTCATTTGAGACATGATGTTAAACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTGA
261 GTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTGA
* * * ** * * * * *
3421603 AAAGCCAAAGTATTAATATTATCTATTCAAATGTGAAGACTTTGTATATGGTACCTAATCCT
326 GAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCT
3421665 GAATATTAAT
Statistics
Matches: 2413, Mismatches: 324, Indels: 57
0.86 0.12 0.02
Matches are distributed among these distances:
474 6 0.00
475 831 0.34
476 1155 0.48
477 415 0.17
478 6 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (477 bp):
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAAGAAGGGAATGTGTTTTTGGTTCCCA
ATCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTAGTCTTATTTATGGGATGAACTTTGA
TTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCC
TAATGAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCTAT
GTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTATTGA
GAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTAGA
AAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATC
AAAAATGGTGGAAAGAAAAGCT
Found at i:3421716 original size:32 final size:32
Alignment explanation
Indices: 3421666--3421745 Score: 99
Period size: 33 Copynumber: 2.4 Consensus size: 32
3421656 CCTAATCCTG
* *
3421666 AATATTAATATATGAATAT-TTAAAATTTTATAT
1 AATATAAAT-TATTAATATATTAAAA-TTTATAT
3421699 AATATAAATTATTAATATATTAAAATTTATAT
1 AATATAAATTATTAATATATTAAAATTTATAT
3421731 AATTATATAATTATT
1 AA-TATA-AATTATT
3421746 TAAATATAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
32 17 0.40
33 18 0.43
34 7 0.17
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.49
Consensus pattern (32 bp):
AATATAAATTATTAATATATTAAAATTTATAT
Found at i:3421719 original size:34 final size:34
Alignment explanation
Indices: 3421671--3421745 Score: 102
Period size: 32 Copynumber: 2.2 Consensus size: 34
3421661 TCCTGAATAT
*
3421671 TAATATATGAATAT-TTAAAATTTTATATAA-TATA
1 TAAT-TATTAATATATTAAAA-TTTATATAATTATA
3421705 -AATTATTAATATATTAAAATTTATATAATTATA
1 TAATTATTAATATATTAAAATTTATATAATTATA
3421738 TAATTATT
1 TAATTATT
3421746 TAAATATAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
32 17 0.46
33 13 0.35
34 7 0.19
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (34 bp):
TAATTATTAATATATTAAAATTTATATAATTATA
Found at i:3421734 original size:26 final size:27
Alignment explanation
Indices: 3421700--3421750 Score: 70
Period size: 26 Copynumber: 1.9 Consensus size: 27
3421690 ATTTTATATA
3421700 ATATAAATTAT-TAATATATTAAAATTT
1 ATATAAATTATATAAT-TATTAAAATTT
*
3421727 ATAT-AATTATATAATTATTTAAAT
1 ATATAAATTATATAATTATTAAAAT
3421751 ATAATTTATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
26 14 0.64
27 8 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (27 bp):
ATATAAATTATATAATTATTAAAATTT
Found at i:3421735 original size:15 final size:15
Alignment explanation
Indices: 3421685--3421735 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 15
3421675 ATATGAATAT
3421685 TTAAAATTTTATATAA
1 TTAAAA-TTTATATAA
*
3421701 TATAAATTATTA-ATATA
1 T-TAAAAT-TTATATA-A
3421718 TTAAAATTTATATAA
1 TTAAAATTTATATAA
3421733 TTA
1 TTA
3421736 TATAATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
15 7 0.24
16 13 0.45
17 9 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TTAAAATTTATATAA
Found at i:3421736 original size:8 final size:8
Alignment explanation
Indices: 3421693--3421762 Score: 53
Period size: 8 Copynumber: 9.1 Consensus size: 8
3421683 ATTTAAAATT
3421693 TTATATAA
1 TTATATAA
3421701 -TATA-AA
1 TTATATAA
3421707 TTAT-TAA
1 TTATATAA
*
3421714 TATATTAAAA
1 T-TA-TATAA
3421724 TTTATATAA
1 -TTATATAA
3421733 TTATATAA
1 TTATATAA
*
3421741 TTATTTAA
1 TTATATAA
3421749 --ATATAA
1 TTATATAA
3421755 TT-TATAA
1 TTATATAA
3421762 T
1 T
3421763 ATAAAAATAT
Statistics
Matches: 50, Mismatches: 4, Indels: 17
0.70 0.06 0.24
Matches are distributed among these distances:
6 7 0.14
7 16 0.32
8 17 0.34
9 5 0.10
10 4 0.08
11 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (8 bp):
TTATATAA
Found at i:3421765 original size:12 final size:12
Alignment explanation
Indices: 3421727--3421766 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
3421717 ATTAAAATTT
3421727 ATATAATTATATA
1 ATATAATT-TATA
3421740 AT-T-ATTTA-A
1 ATATAATTTATA
3421749 ATATAATTTATA
1 ATATAATTTATA
3421761 ATATAA
1 ATATAA
3421767 AAATATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
9 3 0.12
10 3 0.12
11 8 0.33
12 8 0.33
13 2 0.08
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATAATTTATA
Found at i:3422054 original size:16 final size:17
Alignment explanation
Indices: 3422013--3422073 Score: 56
Period size: 19 Copynumber: 3.6 Consensus size: 17
3422003 TGTAATATAT
3422013 TAATTATT-ATTCATAAA
1 TAATTATTAATT-ATAAA
*
3422030 TTTATTTATTAATTATAAA
1 --TAATTATTAATTATAAA
*
3422049 -AATTA-TATTTATAAA
1 TAATTATTAATTATAAA
3422064 TAATTATTAA
1 TAATTATTAA
3422074 AAATATATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
15 9 0.26
16 9 0.26
17 2 0.06
19 12 0.34
20 3 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTATTAATTATAAA
Found at i:3422084 original size:21 final size:21
Alignment explanation
Indices: 3422058--3422104 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
3422048 AAATTATATT
*
3422058 TATAAATAAT-TATTAAAAATA
1 TATAAA-AATATATAAAAAATA
3422079 TATAAAAATATATAAAAAATA
1 TATAAAAATATATAAAAAATA
3422100 -ATAAA
1 TATAAA
3422105 GGAAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (21 bp):
TATAAAAATATATAAAAAATA
Found at i:3422097 original size:12 final size:10
Alignment explanation
Indices: 3422058--3422096 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
3422048 AAATTATATT
3422058 TATAAATAAT-
1 TATAAA-AATA
3422068 TATTAAAAATA
1 TA-TAAAAATA
3422079 TATAAAAATA
1 TATAAAAATA
3422089 TATAAAAA
1 TATAAAAA
3422097 ATAATAAAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 21 0.78
11 6 0.22
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (10 bp):
TATAAAAATA
Found at i:3422545 original size:22 final size:22
Alignment explanation
Indices: 3422506--3422547 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
3422496 ATTTTTAATA
*
3422506 TAAATTTAATAGATTAAAATTT
1 TAAATTTAATACATTAAAATTT
3422528 TAAATTTAATCACA-TAAAAT
1 TAAATTTAAT-ACATTAAAAT
3422548 ATATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAATTTAATACATTAAAATTT
Found at i:3423381 original size:6 final size:6
Alignment explanation
Indices: 3423370--3423403 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
3423360 GTTGTCAGCG
*
3423370 TACATA TACATA TACATA TACATA TTCATA TACA
1 TACATA TACATA TACATA TACATA TACATA TACA
3423404 CATATATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35
Consensus pattern (6 bp):
TACATA
Found at i:3423412 original size:18 final size:18
Alignment explanation
Indices: 3423370--3423417 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
3423360 GTTGTCAGCG
* *
3423370 TACATATACATATACATA
1 TACATATTCATATACACA
3423388 TACATATTCATATACACA
1 TACATATTCATATACACA
*
3423406 TATATATT-ATAT
1 TACATATTCATAT
3423418 GCTAACAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.40
Consensus pattern (18 bp):
TACATATTCATATACACA
Found at i:3424304 original size:1 final size:1
Alignment explanation
Indices: 3424298--3424327 Score: 51
Period size: 1 Copynumber: 30.0 Consensus size: 1
3424288 AAGAATCAAA
*
3424298 CCCCCCCCCCCCCCCCCCCCCCCGCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
3424328 GCTCCCCTAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.97, G:0.03, T:0.00
Consensus pattern (1 bp):
C
Found at i:3424784 original size:2 final size:2
Alignment explanation
Indices: 3424777--3424803 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
3424767 TTAGATTATT
3424777 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
3424804 TAAAGAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:3424862 original size:30 final size:29
Alignment explanation
Indices: 3424819--3424895 Score: 84
Period size: 30 Copynumber: 2.5 Consensus size: 29
3424809 AAATAACAAT
3424819 TTTAAAATATAAA-TTATATAAATATTATGA
1 TTTAAAATATAAATTTAT-TAAATATTAT-A
* *
3424849 TTTAAATTTTAAATTTATTAAATATTATA
1 TTTAAAATATAAATTTATTAAATATTATA
3424878 TTTTAAAAATATATAATT
1 -TTT-AAAATATA-AATT
3424896 GCATGACAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
29 1 0.03
30 24 0.62
31 10 0.26
32 4 0.10
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (29 bp):
TTTAAAATATAAATTTATTAAATATTATA
Found at i:3426401 original size:13 final size:13
Alignment explanation
Indices: 3426383--3426408 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3426373 CAATTTTTTG
3426383 TGTATCGATACAT
1 TGTATCGATACAT
3426396 TGTATCGATACAT
1 TGTATCGATACAT
3426409 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3428806 original size:21 final size:21
Alignment explanation
Indices: 3428782--3428828 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
3428772 TTTGATGCTG
3428782 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
3428802 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
3428823 ATTTTG
1 ATTTTG
3428829 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:3428967 original size:13 final size:13
Alignment explanation
Indices: 3428949--3428987 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
3428939 ATAATCACCC
*
3428949 TGTATCGATACAG
1 TGTATCGATACAA
3428962 TGTATCGATACAA
1 TGTATCGATACAA
3428975 TGTATCGATACAA
1 TGTATCGATACAA
3428988 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:3428998 original size:20 final size:20
Alignment explanation
Indices: 3428973--3429051 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
3428963 GTATCGATAC
3428973 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
3428993 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
3429018 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
3429038 CATGTATCGATACA
1 AATGTATCGATACA
3429052 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:3431086 original size:15 final size:15
Alignment explanation
Indices: 3431066--3431096 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3431056 ATTTCGTTTG
*
3431066 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
3431081 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
3431096 G
1 G
3431097 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:3432929 original size:21 final size:21
Alignment explanation
Indices: 3432900--3432944 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
3432890 AAGTTTTCAT
*
3432900 TTTTCTTAGCGAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
3432920 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
3432942 TTT
1 TTT
3432945 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.07, T:0.51
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:3435420 original size:13 final size:13
Alignment explanation
Indices: 3435402--3435427 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3435392 CAATTTTTTG
3435402 TGTATCGATACAT
1 TGTATCGATACAT
3435415 TGTATCGATACAT
1 TGTATCGATACAT
3435428 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3435442 original size:32 final size:33
Alignment explanation
Indices: 3435382--3435445 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
3435372 TACAAGCCAA
** *
3435382 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
3435415 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
3435446 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:3438858 original size:84 final size:84
Alignment explanation
Indices: 3438703--3438867 Score: 201
Period size: 84 Copynumber: 2.0 Consensus size: 84
3438693 CATTTTCCAC
* * * *
3438703 TTGCAACTCATTTCTTTTCTCCTCTAATTCATTTATTTTCTTTTTAAAAGAATTATTTTCTAAAC
1 TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
3438768 TCATTGATTTACTTTCATT
66 TCATTGATTTACTTTCATT
* *
3438787 TTGCAACTC-TTTCATATTCTTCTCTAATTCACTTAATTTC-TTTT-CAAGAATATCATTCTCTA
1 TTGCAACTCATTTC-TATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAAT-T-ATTCTCTA
* * *
3438849 CACTTATTGATTTATTTTC
63 AACTCATTGATTTACTTTC
3438868 TTCTTTGAGT
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
82 6 0.09
83 9 0.13
84 54 0.78
ACGTcount: A:0.25, C:0.19, G:0.04, T:0.52
Consensus pattern (84 bp):
TTGCAACTCATTTCTATTCTCCTCTAATTCACTTAATTTCTTTTTAAAAGAATTATTCTCTAAAC
TCATTGATTTACTTTCATT
Found at i:3440938 original size:13 final size:13
Alignment explanation
Indices: 3440920--3440945 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
3440910 CAATTTTTTG
3440920 TGTATCGATACAT
1 TGTATCGATACAT
3440933 TGTATCGATACAT
1 TGTATCGATACAT
3440946 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3441801 original size:20 final size:20
Alignment explanation
Indices: 3441776--3441813 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
3441766 TCCCGTGTAA
3441776 ATGTATCGATACAAATTTTG
1 ATGTATCGATACAAATTTTG
*
3441796 ATGTATCGATACATATTT
1 ATGTATCGATACAAATTT
3441814 GAAAATATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.11, G:0.13, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACAAATTTTG
Found at i:3441873 original size:20 final size:20
Alignment explanation
Indices: 3441848--3441912 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 20
3441838 TACAAGCCAA
3441848 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
3441868 TGTATCGATAC-A-----T-
1 TGTATCGATACAATTTTTTG
3441881 TGTATCGATACAATTTTTTG
1 TGTATCGATACAATTTTTTG
3441901 TGTATCGATACA
1 TGTATCGATACA
3441913 TTGTATCGAT
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 2 0.05
19 2 0.05
20 23 0.61
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (20 bp):
TGTATCGATACAATTTTTTG
Found at i:3441886 original size:13 final size:13
Alignment explanation
Indices: 3441868--3441926 Score: 55
Period size: 13 Copynumber: 4.0 Consensus size: 13
3441858 CAATTTTTTG
3441868 TGTATCGATACAT
1 TGTATCGATACAT
3441881 TGTATCGATACAATTTTTT
1 TGTATCGATAC-A-----T
3441900 GTGTATCGATACAT
1 -TGTATCGATACAT
3441914 TGTATCGATACAT
1 TGTATCGATACAT
3441927 ACTTGCTGTA
Statistics
Matches: 39, Mismatches: 0, Indels: 14
0.74 0.00 0.26
Matches are distributed among these distances:
13 24 0.62
14 2 0.05
19 2 0.05
20 11 0.28
ACGTcount: A:0.29, C:0.14, G:0.15, T:0.42
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3441890 original size:33 final size:33
Alignment explanation
Indices: 3441848--3441925 Score: 156
Period size: 33 Copynumber: 2.4 Consensus size: 33
3441838 TACAAGCCAA
3441848 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTTTTTGTGTATCGATACAT
3441881 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATTTTTTGTGTATCGATACAT
3441914 TGTATCGATACA
1 TGTATCGATACA
3441926 TACTTGCTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.28, C:0.13, G:0.15, T:0.44
Consensus pattern (33 bp):
TGTATCGATACAATTTTTTGTGTATCGATACAT
Found at i:3445352 original size:52 final size:52
Alignment explanation
Indices: 3445267--3445412 Score: 215
Period size: 52 Copynumber: 2.8 Consensus size: 52
3445257 ATATGAAAAG
* *
3445267 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
3445319 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
* *
3445371 TTGCCTGTATGTATCGATACA--AAGATCAATGTATCGATACAT
1 TTGCCTGCATGTATCGATACATTTA-AT-AATGTATCGATACAT
3445413 TTGAGTAATC
Statistics
Matches: 86, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:3445498 original size:20 final size:20
Alignment explanation
Indices: 3445473--3445540 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
3445463 ACAAAAAAAA
3445473 TATGTATCGATACAACACTT
1 TATGTATCGATACAACACTT
3445493 TATGTATCGAT---ACA---
1 TATGTATCGATACAACACTT
3445507 T-TGTATCGATACAACACTT
1 TATGTATCGATACAACACTT
3445526 TATGTATCGATACAA
1 TATGTATCGATACAA
3445541 ATCGTTGAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 14
0.75 0.00 0.25
Matches are distributed among these distances:
13 9 0.22
14 1 0.02
16 3 0.07
17 3 0.07
19 1 0.02
20 24 0.59
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (20 bp):
TATGTATCGATACAACACTT
Found at i:3445513 original size:13 final size:13
Alignment explanation
Indices: 3445495--3445519 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
3445485 CAACACTTTA
3445495 TGTATCGATACAT
1 TGTATCGATACAT
3445508 TGTATCGATACA
1 TGTATCGATACA
3445520 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:3445517 original size:33 final size:33
Alignment explanation
Indices: 3445475--3445539 Score: 130
Period size: 33 Copynumber: 2.0 Consensus size: 33
3445465 AAAAAAAATA
3445475 TGTATCGATACAACACTTTATGTATCGATACAT
1 TGTATCGATACAACACTTTATGTATCGATACAT
3445508 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAACACTTTATGTATCGATACA
3445540 AATCGTTGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAACACTTTATGTATCGATACAT
Found at i:3446743 original size:476 final size:476
Alignment explanation
Indices: 3445785--3447637 Score: 2411
Period size: 476 Copynumber: 3.9 Consensus size: 476
3445775 AGTGTCTACA
* * * * *
3445785 ATTAGTATGACTATTCATGTTTGTCTCATTTTAAGGATAAACTTTGATTCTATCAAAAACGGTAG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATAAACTTTGATTCTATAAAAAACGGTGG
* * *
3445850 -AAGAAAAGCTTTTCTTGTGATACCAAATCATCAATGTCATGTATCCTAATCAAAGG-AAGGTGT
66 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAT-GAAGGAAAGGTGT
* * * *
3445913 TTTTGG-TGCTGAATCTTGAATAA-AATGGAGACTGTTATGAGAATCGATGCTAGTCTTATTTAT
130 TTTTGGTTTC-CAATCTTGAA-AAGAATGGAAACTGTTACGAGAATCGATGCTAGTCTTATTTAT
* * *
3445976 GGGATGAACTTTAATTTCATA-GAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCAT
193 GGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCAT
* * * * * * * *
3446040 TAGTATCGTTTATCCTAGTGAGGAAAATGTTTTTATAGTGTCTAATCACAAAATGAATGAAGATT
257 CAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATC
* ***
3446105 ATTACTAGAATCCAAGTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGCAAAAA
322 ATTACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAAGTTAGACTTTATAAAAATTGGCGGGAA
* * *
3446170 GAAAGCCTTTCTTGAAAAGCCAAAGCATCAATATCGTCTATCCCAATAAGAAGACTTTGTTTATG
387 GAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATG
* * *
3446235 GTACCTATTCCTAAAAAGAATGGGG
452 GTGCCTAATCCTAAAAAGAATGAGG
* * * *
3446260 ATTAGTATGACTATTCTTGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATGAAAAACTGTGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATAAACTTTGATTCTATAAAAAACGGTGG
* * * * *
3446325 AGAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATTAAGGAAATGTCTT
66 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAAGGAAAGGTGTT
* * * * *
3446390 TTTGGTTTCGAAGT-TGGAAAAGAATGGAAACCGTTACGAGAATCGATG-TAAGTCTTCTCTATG
131 TTTGGTTTCCAA-TCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCT-AGTCTTATTTATG
* * *
3446453 GGATGAACTTTGATTTTACGGAAAATAGGGCAAGGAAAAGATTTCGAAGCAAAAGGAAATCATCA
194 GGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCA
** * * *
3446518 ATATTTTTTATCCTAATGAAGAGAATGCGTTTATAGTGTCTAATCATAAAATGATTGAGGATCAT
259 ATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATCAT
* * * *
3446583 TACTAGAATCCATGTTTGTCTTATTTGAAGCATGAAGTTAGACTTTATAAAAATTGGTGGGAAGA
324 TACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAAGTTAGACTTTATAAAAATTGGCGGGAAGA
* *
3446648 AAGCCTTTCTTGAGAAGCCAAAGCATCAATATTGTCTATCCTAATGAGAAGACTTTCTTTATGGT
389 AAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGT
*
3446713 GCCTAATCATAAAAAGAATGAGG
454 GCCTAATCCTAAAAAGAATGAGG
* *
3446736 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACCTTGATTCTATAAAAAACGGTGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATAAACTTTGATTCTATAAAAAACGGTGG
* * * * * *
3446801 AAAGAAAAGCTTTACTTGCAACACCAAATCATCAGTGTCATTTATCCTAAAGAAGGAAATGTGTT
66 AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAAGGAAAGGTGTT
* * * * * *
3446866 TTTGGTTCCCAATCTTGAAAAGAATGGAGACTTTTATGAGAATTGATGCTAGTCTTATTTATGGA
131 TTTGGTTTCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTAGTCTTATTTATGGG
* *
3446931 ATGAACTTTGATTTTAAGGAAAATATGGCTAGGAAAAGATTTTCG-TGCAAAAGAAAATCATCAA
196 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGA-TTTCGATGCAAAAGAAAATCATCAA
* * * * ** ** *
3446995 TATCGTTTATCCTAAAGAGGTGAATGTGTTTATAATGTCTAATTGCAAAATGAGCGAGGATCACT
260 TATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATCATT
* * * *
3447060 ACTAGAATCCATGTTTGTCTCATTTGAAGCATGAACTTAGACTTTATAAAAATTGGCGGGAAAAA
325 ACTAGAATCCAAGTTTGTCTCATTTGAAGCACGAAGTTAGACTTTATAAAAATTGGCGGGAAGAA
* * * * * *
3447125 AGCTTTTCTTGTGAAGCCAAAGCATTAATATCGTATATCCTAATGAGAATACTTTGTCTATGGTG
390 AGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTG
* *
3447190 CCAAATCCTGAAAAGAATGAGG
455 CCTAATCCTAAAAAGAATGAGG
* * * *
3447212 ATTAATATGACTATTCATGTTTGTCTCCTTTGAGGGACAAACTTTGACTCTATAAAAAACGATGG
1 ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATAAACTTTGATTCTATAAAAAACGGTGG
*
3447277 AAAGAAAAGCTTTTCTTGCGAC-CCTAAATCATCAATGTCATGTATCCTAATGAAGGGAAGGTGT
66 AAAGAAAAGCTTTTCTTGCGACACC-AAATCATCAATGTCATGTATCCTAATGAAGGAAAGGTGT
** * * * *
3447341 TTTT-GCCTCCTATTCTTGAAAAGAAT-GAAGGCTGTTACAAGAATTGATGCTAGTCTTATTTAT
130 TTTTGGTTTCC-AATCTTGAAAAGAATGGAA-ACTGTTACGAGAATCGATGCTAGTCTTATTTAT
* * *
3447404 GGGATGAGCTTTGATGTTAAGGAAAATAGGGTAAGGAAAAGATTTCGATGCAAAA-ACAAATCAT
193 GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGA-AAATCAT
* * * *
3447468 CAATGTCATTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTATTCACAAAATGAATGAGGATA
257 CAATATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATC
* *
3447533 ATTACT-GAAATCAAAGTTTGTCTCATTT-AAGGCACGAAGTTAGACTTTATAAAAATTGGTGGG
322 ATTACTAG-AATCCAAGTTTGTCTCATTTGAA-GCACGAAGTTAGACTTTATAAAAATTGGCGGG
*
3447596 AAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATCGTCTA
385 AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
3447638 ATTAAAAAAT
Statistics
Matches: 1196, Mismatches: 165, Indels: 33
0.86 0.12 0.02
Matches are distributed among these distances:
475 81 0.07
476 1106 0.92
477 9 0.01
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (476 bp):
ATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATAAACTTTGATTCTATAAAAAACGGTGG
AAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAAGGAAAGGTGTT
TTTGGTTTCCAATCTTGAAAAGAATGGAAACTGTTACGAGAATCGATGCTAGTCTTATTTATGGG
ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCGATGCAAAAGAAAATCATCAAT
ATCGTTTATCCTAATGAAGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAGGATCATTA
CTAGAATCCAAGTTTGTCTCATTTGAAGCACGAAGTTAGACTTTATAAAAATTGGCGGGAAGAAA
GCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGC
CTAATCCTAAAAAGAATGAGG
Found at i:3446776 original size:158 final size:157
Alignment explanation
Indices: 3446120--3447294 Score: 382
Period size: 159 Copynumber: 7.4 Consensus size: 157
3446110 TAGAATCCAA
* * * * ****
3446120 GTTTGTCTCATTTGAGGCACGAAGTTAGACTTTATAAAAATTGGCAAAAAG-AAAGCCTTTCTTG
1 GTTTGTCTCCTTTGAGGGATGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCCTTTCTTG
* * * * *
3446184 AAAAGCCAAAGCATCAATATCGTCTATCCCAATAAGAAGACTTTGTTTATGGTACCTATTCCTAA
66 AAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGA-TTTCTTTATGGTGCCTAATCATAA
* * *
3446249 AAAGAATGGGGATTAGTATGACTATTCTT
130 AAAGAATGAGGATCAGTATGA-TATTCAT
* * *
3446278 GTTTGTCTCCTTTGAGGGATGAACTTTGA-TTCTATGAAAAACT-GT-GGAGAGAAAAGCTTTTC
1 GTTTGTCTCCTTTGAGGGATGAACTTAGACTT-TAT-AAAAATTGGTGGGA-AGAAAAGCCTTTC
* * * * * * * * ** *
3446340 TTGTGACA-CCAAATCATCAATGTCATGTATCCTAATTAAGGAA-ATGTCTTTTTGGTTTCGAAG
63 TTG-AAAAGCCAAAGCATCAATATCGTCTATCCTAA-TAA-GAAGATTTCTTTATGGTGCCTAA-
* * * * * * *
3446403 T--TGGAAAAGAATG-GAAACCGTTACGAGAATCGAT
124 TCAT-AAAAAGAATGAGGATCAG-TATGATATTC-AT
** * * * * ** * * *
3446437 GTAAGTCTTCTCT-ATGGGATGAACTTTGATTTTACGGAAAA-TAG-GGCAAGGAAAAG-ATTTC
1 GTTTGTCTCCTTTGA-GGGATGAACTTAGACTTTA-TAAAAATTGGTGGGAA-GAAAAGCCTTTC
** * * ** * * * * *
3446498 GAAGCAAAAG-GAAATCATCAATATTTTTTATCCTAATGAAG-AGAATGCGTTTATAGTGTCTAA
63 -TTG-AAAAGCCAAAGCATCAATATCGTCTATCCTAAT-AAGAAGATTTC-TTTATGGTGCCTAA
* * * *
3446561 TCATAAAATGATTGAGGATCATTACTAGA-ATCCAT
124 TCATAAAAAGAATGAGGATCAGTA-T-GATATTCAT
** * * *
3446596 GTTTGTCTTATTTGAAGCATGAAGTTAGACTTTATAAAAATTGGTGGGAAG-AAAGCCTTTCTTG
1 GTTTGTCTCCTTTGAGGGATGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCCTTTCTTG
* * *
3446660 AGAAGCCAAAGCATCAATATTGTCTATCCTAATGAGAAGACTTTCTTTATGGTGCCTAATCATAA
66 AAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGA-TTTCTTTATGGTGCCTAATCATAA
*
3446725 AAAGAATGAGGATTAGTATGACTATTCAT
130 AAAGAATGAGGATCAGTATGA-TATTCAT
** *
3446754 GTTTGTCTCCTTTGAGGGATGAACCTT-GA-TTCTATAAAAAACGGTGGAAAGAAAAG-CTTTAC
1 GTTTGTCTCCTTTGAGGGATGAA-CTTAGACTT-TATAAAAATTGGTGGGAAGAAAAGCCTTT-C
* * * * * * * * * * * *
3446816 TTGCAACA-CCAAATCATCAGTGTCATTTATCCTAAAGAAGGAA-ATGTGTTTTTGGTTCCCAAT
63 TTG-AAAAGCCAAAGCATCAATATCGTCTATCCT-AATAA-GAAGATTTCTTTATGGTGCCTAAT
* * ** * *
3446879 CTTGAAAAGAATG-GAGA-CTTTTATGAGAATTGAT
125 CATAAAAAGAATGAG-GATC-AGTATGA-TATTCAT
* * ** * * * * **
3446913 GCTAGTCTTATTT-ATGGAATGAACTTTGATTTTA-AGGAAAATATGGCT---AGGAAAAGATTT
1 GTTTGTCTCCTTTGA-GGGATGAACTTAGACTTTATA--AAAAT-TGG-TGGGAAGAAAAGCCTT
* * * * ** * * ** *
3446973 TCGTGCAAAAG-AAAATCATCAATATCGTTTATCCTAA-AGAGGTGAATGTGTTTATAATGTCTA
61 TCTTG-AAAAGCCAAAGCATCAATATCGTCTATCCTAATA-AGAAG-ATTTCTTTATGGTGCCTA
*** * ** * *
3447036 ATTGCAAAATGAGCGAGGATCACTACTAGA-ATCCAT
123 ATCATAAAAAGAATGAGGATCAGTA-T-GATATTCAT
* * * * *
3447072 GTTTGTCTCATTTGAAGCATGAACTTAGACTTTATAAAAATTGGCGGGAA-AAAAGCTTTTCTTG
1 GTTTGTCTCCTTTGAGGGATGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCCTTTCTTG
** * * * * * * * * *
3447136 TGAAGCCAAAGCATTAATATCGTATATCCTAATGAGAATACTTTGTCTATGGTGCCAAATCCTGA
66 AAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGA-TTTCTTTATGGTGCCTAATCATAA
* *
3447201 AAAGAATGAGGATTAATATGACTATTCAT
130 AAAGAATGAGGATCAGTATGA-TATTCAT
** * * ** * * *
3447230 GTTTGTCTCCTTTGAGGGACAAACTTTGACTCTATAAAAAACGATGGAAAGAAAAGCTTTTCTTG
1 GTTTGTCTCCTTTGAGGGATGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCCTTTCTTG
3447295 CGACCCTAAA
Statistics
Matches: 732, Mismatches: 213, Indels: 143
0.67 0.20 0.13
Matches are distributed among these distances:
156 4 0.01
157 23 0.03
158 282 0.39
159 370 0.51
160 40 0.05
161 12 0.02
162 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.32
Consensus pattern (157 bp):
GTTTGTCTCCTTTGAGGGATGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAAGCCTTTCTTG
AAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGATTTCTTTATGGTGCCTAATCATAAA
AAGAATGAGGATCAGTATGATATTCAT
Found at i:3448310 original size:158 final size:159
Alignment explanation
Indices: 3448128--3448787 Score: 409
Period size: 159 Copynumber: 4.2 Consensus size: 159
3448118 TAGAATCCAC
* * * * *
3448128 GTTTGTCTCGTTTGAAGCACGAACTTAGACT-TTACGAAAATTGGTGGGAAG-ATAGCCTTTCTT
1 GTTTGTCTCCTTTGAGGGATGAACTTAGA-TATTACGAAAATTGGTGGGAAGAAAAGCCTTTCTT
* * * *
3448191 GAGAAGCCAAAGCAACAATATCATCTATGCTAATATGAAGACTTTCTTTATGGTGCCTAATCCT-
65 GAAAAGCCAAAGCATCAATATCATCTATCCTAATATGAAGACATTCTTTATGGTGCCTAAT-CTA
3448255 GAAAAGAATGAGGATTAGTTTGACTATTCAT
129 GAAAAGAATGAGGATTAGTTTGACTATTCAT
* ** ** *
3448286 GTTTGTCTCCTTTGAGGGATGAACTTTGATCCTATC-AAAAACGGT-GGAGAGAAAAGCTTTTCT
1 GTTTGTCTCCTTTGAGGGATGAACTTAGATATTA-CGAAAATTGGTGGGA-AGAAAAGCCTTTCT
* * * * * * * *
3448349 TGTGACA-CCAAATCATCAATGTCATATATCCT-A-ATGAAAGGA-ATGT-TATTTTGGTTCCGA
64 TG-AAAAGCCAAAGCATCAATATCATCTATCCTAATATG-AA-GACAT-TCT-TTATGGTGCCTA
* * * *
3448409 ATCTGGAAAAGAATG-GAGACT-GTTATGA-GAATCGAT
124 ATCTAGAAAAGAATGAG-GATTAGTT-TGACTATTC-AT
* * * * * * *
3448445 GCTAGTCTTCTTT-ATGGGATGAACTTTGATATTAAGGAAAA-TAG-GGGAAGGAAAAG-ATTTC
1 GTTTGTCTCCTTTGA-GGGATGAACTTAGATATT-ACGAAAATTGGTGGGAA-GAAAAGCCTTTC
* * * * * * * * **
3448506 GATGCAAAAG-AAAATCATCAATATCGTTTATCCTAATGA-GGAGA-ATGCGTTTATAGTGTTTA
63 -TTG-AAAAGCCAAAGCATCAATATCATCTATCCTAAT-ATGAAGACATTC-TTTATGGTGCCTA
* *
3448568 ATC-AGAAAAGGAATGAGGATCA--TT-ACTAGAATTGAT
124 ATCTAGAAAA-GAATGAGGATTAGTTTGACT---ATTCAT
* ** * * *
3448604 GTTTGTCTCTTTTGAGGCTTAAACTTAGACT-TTACAAAAATTGGTGGGAAG-ATAGCCTTTCTT
1 GTTTGTCTCCTTTGAGGGATGAACTTAGA-TATTACGAAAATTGGTGGGAAGAAAAGCCTTTCTT
* * *
3448667 GAAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGACATTGTTTATGGTGCCTAATCTAG
65 GAAAAGCCAAAGCATCAATATCATCTATCCTAATATGAAGACATTCTTTATGGTGCCTAATCTAG
* *
3448732 AAAAGAATCAGGATTAGTATGACTATTCAT
130 AAAAGAATGAGGATTAGTTTGACTATTCAT
3448762 GTTTGTCTCCTTTGAGGGATGAACTT
1 GTTTGTCTCCTTTGAGGGATGAACTT
3448788 TAATTCGATC
Statistics
Matches: 371, Mismatches: 87, Indels: 88
0.68 0.16 0.16
Matches are distributed among these distances:
156 1 0.00
157 14 0.04
158 149 0.40
159 182 0.49
160 20 0.05
161 4 0.01
162 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.21, T:0.32
Consensus pattern (159 bp):
GTTTGTCTCCTTTGAGGGATGAACTTAGATATTACGAAAATTGGTGGGAAGAAAAGCCTTTCTTG
AAAAGCCAAAGCATCAATATCATCTATCCTAATATGAAGACATTCTTTATGGTGCCTAATCTAGA
AAAGAATGAGGATTAGTTTGACTATTCAT
Found at i:3448676 original size:476 final size:474
Alignment explanation
Indices: 3447780--3450312 Score: 3076
Period size: 476 Copynumber: 5.3 Consensus size: 474
3447770 GAGAAAACTT
* * * * * *
3447780 TGAAAAGAATGGGGATTAGTATGATTACTCATGCTTGTCTCGTTTGAGGGACAAACTTTGATTCT
1 TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
* * *
3447845 ATCAAAAACGGTGGAAGAAAAGCATTTCTTGTGACACCAAATCATCAATGTCATGGATCCTAATC
66 ATCAAAAACGGTGGAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATG
* * * * *
3447910 AAAGGAAAGTGTTTTCGGTACCAAATCTTGAAAATAATGGAGACTGTTACGAGAATCGATGTTAG
131 AAAGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAG
* *
3447975 TCTTCTTTATGGGATGAACTTTGATTTTACGGAAAATAGAGCAAGG-AAAGATTTCAATGCAAAA
196 TCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAAA
* * * *
3448039 GAAAATCGTCAATATCGTTTATCTTAATAAGTAGAATGTGTTTATAGTGTCTAATCACAAAATGA
261 GAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGA
* * * * * *
3448104 ATAAGGATCATTACTAGAATCCACGTTTGTCTCGTTTGAAGCACGAACTTAGACTTTACGAAAAT
326 ATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAAAT
* *
3448169 TGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCAACAATATCATCTATGCTAATATGAAGACT
391 TGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATA-GAAGACT
*
3448234 TTCTTTATGGTGCCTAATCC
455 TTGTTTATGGTGCCTAATCC
* * *
3448254 TGAAAAGAATGAGGATTAGTTTGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATCCT
1 TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
*
3448319 ATCAAAAACGGTGGAGAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATATATCCTAAT
66 ATCAAAAACGGTGGA-AGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAAT
* * *
3448384 GAAAGGAATGT-TATTTTGGTTCCGAATCTGGAAAAGAATGGAGACTGTTATGAGAATCGATGCT
130 GAAAGGAATGTGT-TTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCT
* * *
3448448 AGTCTTCTTTATGGGATGAACTTTGATATTAAGGAAAATAGGGGAAGGAAAAGATTTCGATGCAA
194 AGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAA
* * * *
3448513 AAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGCGTTTATAGTGTTTAATCAGAAAAG
259 AAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAAT
** * *
3448578 GAATGAGGATCATTACTAGAATTGATGTTTGTCTCTTTTGAGGCTTAAACTTAGACTTTACAAAA
324 GAATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAA
* *
3448643 ATTGGTGGGAAGATAGCCTTTCTTGAAAAGCCAAAGCATCAATATCGTCTATCCTAATAAGAAGA
389 ATTGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAAT-AGAAGA
*
3448708 CATTGTTTATGGTGCCTAAT-C
453 CTTTGTTTATGGTGCCTAATCC
* * *
3448729 TAGAAAAGAATCAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTAATTC
1 T-GAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTC
* * *** * * * * **
3448794 GATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACTAAAGCGTTAATGTCAAATATCCTAA
65 TATCAAAAACGGTGG-AAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCT--
*
3448859 GGAAGGGAATGTGTTTTTAAGGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGA
127 -------AA--TG------A--AA-GGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGA
* * *
3448924 CTATTACGAGAATTGATGCTAGTCTTCTTTATAGGATGAACTTTGATTTTAAGGAAAATAGGGCA
174 CTGTTACGAGAATCGATGCTAGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCA
* * * * * *
3448989 AGGAAAAGATTTCCATGAAAAAGAAAATCACCAGTATCGTTTATCCTAATGAGGAAAATGTTTTT
239 AGGAAAAGATTTCAATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTT
* * * * * **
3449054 ATAATGTCTAATCACAAAATGAATGAAGATTAGTACCAGAATCCATGTTTAACTCTTTTGAGGCA
304 ATAGTGTCTAATCACAAAATGAATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCA
* * * * * * * *
3449119 CGGAGTTAGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAATCCAAAGCTTCAATAT
369 TGAACTTAGACTTTACAAAAATTGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATCAATAT
* *
3449184 CGTCTATCCTAATGAGAAGACTTTGTTTATAGTG-CTAATCC
434 CATCTATCCTAAT-AGAAGACTTTGTTTATGGTGCCTAATCC
* * * * * *
3449225 TAAAAAGAATGAGGATTAGTTTGACTATT-AAGTTTGTCTCCTTTAAGGGACAAACTTCGATTCT
1 TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
* * * *
3449289 ATCAAAAATGGTAGGGAGAAAAGCTCTTCTTGTGACACCAAATAATCAATGTCATGTATCCTAAT
66 ATCAAAAACGGT-GGAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAAT
* ** * * * *
3449354 GAAGGGAATGCCTTTTTGGTTCCAAATCTAGAAAAGAATGGAGATTGTTACAAGAATCGGTGCTA
130 GAAAGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTA
* *
3449419 GTCTTTTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCAATGCAAA
195 GTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAA
* * *
3449484 AGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAAGG
260 AGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATG
* * *
3449549 AATGAGGATCATTACTAGAATCGATGTTTGTCTCTTTTGAGGCATAAACTTAGAATTTACAAAAA
325 AATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * ** * *
3449614 TT-GTTGCATATAAAGCCTTTCTT-ACGAAATCAAAGCATCAATATCATGTATCCTTATGAGAAG
390 TTGGTGGGA-AGATAGCCTTTCTTGA-GAAGCCAAAGCATCAATATCATCTATCCTAAT-AGAAG
* **
3449677 A-TTATGTTTTTGGCACCTAATCC
452 ACTT-TGTTTATGGTGCCTAATCC
* * * * *
3449700 GGAAAAGATTGAGGATTAGTATGACTATTCGTATTTGTCTCTTTTGAGGGACGAACTTTGATTCT
1 TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
* *
3449765 ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAAT
66 ATCAAAAACGGTGG-AAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAAT
* * * * * *
3449830 GAAGGGAATGTGTTTTTGGTACCGAATCTTGAAAAGAATGGAGACTATTACGAGAATTGATGCTT
130 GAAAGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTA
* * * * **
3449895 GTCTTATATATGGAATGAACTTTGATTTTAAGGAAAATAGGGTAAGGAAAAGATTTCCTTGCAAA
195 GTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAA
* * * * * *
3449960 AAAAAATCATTAGTATCATTTTTCCTAATGAGGAGAATGT-TTATATAGTGCCTAATCACAAAAT
260 AGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTT-TATAGTGTCTAATCACAAAAT
* * * * * * **
3450024 GATTGAAGATCATTACTTGAATCCATGTTTATCTCATTTGAGGCATGAAGTTAGACTTTGTAAAA
324 GAATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAA
* *
3450089 ATTGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATTAATATCATCTATCCTAAT-G-AGAA
389 ATTGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATAGAAGAC
** * *
3450152 TGGGGATTA--GTACCTAATCC
454 T-TTGTTTATGGTGCCTAATCC
* * * * *
3450172 TAAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTCTTTTGAGGGACGAACTTTGGTTCT
1 TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
* * * * *
3450237 ATCAAAACCAGTGGAAGAAAAGCTTTTCTTGTGACACCAAATCGTCAATGTCATGTGTCCTAATT
66 ATCAAAAACGGTGGAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATG
3450302 AAAGGAATGTG
131 AAAGGAATGTG
3450313 ACACGAAATT
Statistics
Matches: 1764, Mismatches: 255, Indels: 83
0.84 0.12 0.04
Matches are distributed among these distances:
471 57 0.03
472 78 0.04
473 10 0.01
474 353 0.20
475 182 0.10
476 664 0.38
477 8 0.00
483 2 0.00
485 4 0.00
487 2 0.00
493 1 0.00
494 75 0.04
495 34 0.02
496 293 0.17
497 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.32
Consensus pattern (474 bp):
TGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGACGAACTTTGATTCT
ATCAAAAACGGTGGAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATG
AAAGGAATGTGTTTTTGGTTCCAAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTAG
TCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCAATGCAAAA
GAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGA
ATGAGGATCATTACTAGAATCCATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAAAT
TGGTGGGAAGATAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATAGAAGACTT
TGTTTATGGTGCCTAATCC
Found at i:3448881 original size:20 final size:20
Alignment explanation
Indices: 3448856--3448896 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
3448846 TCAAATATCC
3448856 TAAGGAAGGGAATGTGTTTT
1 TAAGGAAGGGAATGTGTTTT
3448876 TAAGGAAGGGAATGTGTTTT
1 TAAGGAAGGGAATGTGTTTT
3448896 T
1 T
3448897 GGTTCCCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.00, G:0.34, T:0.37
Consensus pattern (20 bp):
TAAGGAAGGGAATGTGTTTT
Found at i:3449945 original size:159 final size:159
Alignment explanation
Indices: 3449306--3449999 Score: 430
Period size: 159 Copynumber: 4.4 Consensus size: 159
3449296 ATGGTAGGGA
* * * * **
3449306 GAAAAGCTCTTCTTGTGACACCAAATAATCAATGTCATGTATCCTAATGAAGGGAATGCCTTTTT
1 GAAAAGCTTTTCTTGCGAAACCAAATAATCAATATCATGTATCCTAATG-AGGGAATGTGTTTTT
* * * * * * *
3449371 GGTTCCAAATCTAGAAAAGAATGGA-GATTGTTACAAGAATCGGTGCTAGTCT-TTTTTATGGGA
65 GGTACCTAATCTAGAAAAGAATGGAGGATTATTACGAGAATCGATGCTTGTCTCTTTTGA-GGGA
3449434 TGAACTTTGATTTTAAGGAAAATAGGGTAAG
129 TGAACTTTGATTTTAAGGAAAATAGGGTAAG
* * * ** * *
3449465 GAAAAG-ATTTCAATGCAAAAGAAAATAATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
1 GAAAAGCTTTTC-TTGCGAAACCAAATAATCAATATCATGTATCCTAATGAGG-GAATGTGTTTT
* ** * * * * *
3449529 TAGTGTCTAATC-ACAAAAGGAAT-GAGGATCATTACTAGAATCGATGTTTGTCTCTTTTGAGGC
64 TGGTACCTAATCTAGAAAA-GAATGGAGGATTATTACGAGAATCGATGCTTGTCTCTTTTGAGGG
* * * * * *
3449592 ATAAACTTAGAATTTACA--AAAATTGTTGCATA-
128 ATGAACTTTGATTTTA-AGGAAAATAG-GGTA-AG
* * * * ** * * * *
3449624 -TAAAGCCTTTCTTACGAAATCAAAGCATCAATATCATGTATCCTTATGAGAAGATTATGTTTTT
1 GAAAAGCTTTTCTTGCGAAACCAAATAATCAATATCATGTATCCTAATGAG-GGAATGTGTTTTT
* ** * * * * *
3449688 GGCACCTAATCCGGAAAAG-ATTGAGGATTAGTATGACTATTCGTAT--TTGTCTCTTTTGAGGG
65 GGTACCTAATCTAGAAAAGAATGGAGGATTATTACGA-GAATCG-ATGCTTGTCTCTTTTGAGGG
* * *** * *
3449750 ACGAACTTTGATTCTATCAAAAAT-GGTGGAAA
128 ATGAACTTTGATTTTAAGGAAAATAGG-GTAAG
* * *
3449782 GAAAAGCTTTTCTTGCGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTT
1 GAAAAGCTTTTCTTGCGAAACCAAATAATCAATATCATGTATCCTAATG-AGGGAATGTGTTTTT
* * * * * *
3449847 GGTACCGAATCTTGAAAAGAATGGA-GACTATTACGAGAATTGATGCTTGTCT-TATAT-ATGGA
65 GGTACCTAATCTAGAAAAGAATGGAGGATTATTACGAGAATCGATGCTTGTCTCT-TTTGA-GGG
3449909 ATGAACTTTGATTTTAAGGAAAATAGGGTAAG
128 ATGAACTTTGATTTTAAGGAAAATAGGGTAAG
* * * ** * * * * *
3449941 GAAAAGATTTCCTTGCAAAAAAAAATCATTAGTATCATTTTTCCTAATGAGGAGAATGT
1 GAAAAGCTTTTCTTGCGAAACCAAATAATCAATATCATGTATCCTAATGAGG-GAATGT
3450000 TTATATAGTG
Statistics
Matches: 398, Mismatches: 110, Indels: 54
0.71 0.20 0.10
Matches are distributed among these distances:
157 5 0.01
158 117 0.29
159 259 0.65
160 17 0.04
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (159 bp):
GAAAAGCTTTTCTTGCGAAACCAAATAATCAATATCATGTATCCTAATGAGGGAATGTGTTTTTG
GTACCTAATCTAGAAAAGAATGGAGGATTATTACGAGAATCGATGCTTGTCTCTTTTGAGGGATG
AACTTTGATTTTAAGGAAAATAGGGTAAG
Found at i:3451761 original size:20 final size:20
Alignment explanation
Indices: 3451723--3451762 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
3451713 TAGCCTTTGA
**
3451723 TCATGCATTTTCATTATGTT
1 TCATGCATTTTCAACATGTT
*
3451743 TCATGCATTTTTAACATGTT
1 TCATGCATTTTCAACATGTT
3451763 CGACATCTCA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.23, C:0.15, G:0.10, T:0.53
Consensus pattern (20 bp):
TCATGCATTTTCAACATGTT
Found at i:3454126 original size:476 final size:474
Alignment explanation
Indices: 3453221--3454883 Score: 2330
Period size: 476 Copynumber: 3.5 Consensus size: 474
3453211 ACTTCACTCA
* * *
3453221 ACTAGAATCCACGCTTGCCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
1 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
* * * * * * *
3453286 AGCCTTTCCTGATATGTCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTG
66 AGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTATGGTA
* * * * *
3453351 CCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATATTTGTCTCTTTCGAGGGATGGACT
131 CCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTCGAGGGACGAACT
* *
3453416 TTGATTCTATCAAAAACGGTAAAAAGCAAAGCCTTTCTTGTGACACTAAATCATCAATGTCATGT
196 TTGATTCTATCAAAAACGGTAGAAAGAAAAGCCTTTCTTGTGACACTAAATCATCAATGTCATGT
* * *
3453481 ATCCTAATGAAGGGAATGTGTTATTGGTTCCCAATCTTGAAACGAATGGAGACTGTTACGAGAAT
261 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAAAAT
* *
3453546 CAATGCTAGTCTTATTTATGAAATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGAGTTC
326 C-ATGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTC
* * *
3453611 CATGCAAAATAAAATCATCAGTATCGTTTATCCTAATGAGGTGAATGTGTTTATAGTGTCTAATC
390 CATGCAAAAGAAAATCATCAGTATC-TTCATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATC
3453676 ACAAAATGAATGAAGTTCATC
454 ACAAAATGAATGAAGTTCATC
* *
3453697 ACTAGAATCCATGTTTGTCTCATTTGAGGTACGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
1 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
* * * *
3453762 AG-CTTCTCTTGAGAATCTAAAGTATCAATATCATCTATCCTAATGAGAAGACTTGGTTTATGGT
66 AGCCTT-TCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTATGGT
* *
3453826 ACCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTCGAGGGATGAAC
130 ACCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTCGAGGGACGAAC
* * * *
3453891 TTTGACTCTATCAAAAGCGGTAGAAAGCAAAGCCTTTCTTGTGACAATAAATCATCAATGTCATG
195 TTTGATTCTATCAAAAACGGTAGAAAGAAAAGCCTTTCTTGTGACACTAAATCATCAATGTCATG
* * * *
3453956 TATCCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGTGGCGGTTACGAAAA
260 TATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAAAA
* *
3454021 TCAGTGCTAGTCTTATTTATGAGATAAACTTAGATTTTAAGAAAAATAGGGCAAGGAAAAGATTT
325 TCA-TGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTT
* * *
3454086 CCATGCAAAAGAAAATCATCAGTATCATTCATCGTAATGAGGACAATGTATTTATAGTGTCTAAT
389 CCATGCAAAAGAAAATCATCAGTATC-TTCATCCTAATGAGGAGAATGTGTTTATAGTGTCTAAT
*
3454151 CATAAAATGAATGAAGTTCATC
453 CACAAAATGAATGAAGTTCATC
* * * *
3454173 ACTAGAATCCAAGTTTGTCTCATTTGAGGAATGAATTTAGATTTTATAAAAATTGGTAGGAATAA
1 ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
*
3454238 AGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTACGGTA
66 AGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTATGGTA
* * * * *
3454303 CCTAATCCTAAAAAGAATGGGGATTGGCATGACTATTCTTGTTTGTCTCCATT-GAGGAACGAAC
131 CCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCC-TTCGAGGGACGAAC
* * * * * *
3454367 TTTGATTCTATCAAAAA-TGTTGAAAGAAAAAGCTTTTCTTGCGACACCAAATCATCAATGCCAT
195 TTTGATTCTATCAAAAACGGTAGAAAG-AAAAGCCTTTCTTGTGACACTAAATCATCAATGTCAT
* * * * * *
3454431 TTATCCTAATGAAGGGAATGTCTTTTTGGTTCCGAATCTAGAAAAGAATGGAGATTGTTATGAGA
259 GTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA-A
* * * * *
3454496 ATTTATGCTAGTCTTATTTATGGGATGAACTTTGACTTTAAGGAAAATAGGGCAAGGAAAAGATT
323 AATCATGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATT
** * * * * *
3454561 TTGACGCAAAAGAAAATCATCAATATCGTCTATCCTAAGGGGGAGAATGTGTTTATAGTGTCTAA
388 TCCATGCAAAAGAAAATCATCAGTATCTTC-ATCCTAATGAGGAGAATGTGTTTATAGTGTCTAA
*
3454626 TCACAAAATGAATGAAGTTCATT
452 TCACAAAATGAATGAAGTTCATC
* * * * *
3454649 ACTAGAAT-C-TGTTTTGTCACATTTGAGGCATGAATTCAAATTTTAAAAAAAAATGGTGGGAAG
1 ACTAGAATCCATG-TTTGTCTCATTTGAGGCATGAATTTAGATTTT-ATAAAAATTGGTGGGAAG
3454712 AAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCA-CTTATCCTAATGAGAAGACTTTGTTTATG
64 AAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATC-TATCCTAATGAGAAGACTTTGTTTATG
* * * *
3454776 GTGCCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCAAGTTTGTCTTCTTTGAGGGACGA
128 GTACCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTCGAGGGACGA
* * *
3454841 ACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
193 ACTTTGATTCTATCAAAAACGGTAGAAAGAAAAGCCTTTCTTG
3454884 CAGCACCAAG
Statistics
Matches: 1056, Mismatches: 119, Indels: 24
0.88 0.10 0.02
Matches are distributed among these distances:
474 1 0.00
475 45 0.04
476 994 0.94
477 16 0.02
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (474 bp):
ACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
AGCCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTAATGAGAAGACTTTGTTTATGGTA
CCTAATCCTAAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTCGAGGGACGAACT
TTGATTCTATCAAAAACGGTAGAAAGAAAAGCCTTTCTTGTGACACTAAATCATCAATGTCATGT
ATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAAAAT
CATGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCC
ATGCAAAAGAAAATCATCAGTATCTTCATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCAC
AAAATGAATGAAGTTCATC
Found at i:3457432 original size:24 final size:23
Alignment explanation
Indices: 3457400--3457451 Score: 86
Period size: 24 Copynumber: 2.2 Consensus size: 23
3457390 ATTAGTATCA
3457400 TTTATCGTAATAAGGAGAATGTTG
1 TTTATCGTAATAAGGAGAATG-TG
*
3457424 TTTATCGTAATGAGGAGAATGTG
1 TTTATCGTAATAAGGAGAATGTG
3457447 TTTAT
1 TTTAT
3457452 AGTGTCTAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.40
Consensus pattern (23 bp):
TTTATCGTAATAAGGAGAATGTG
Found at i:3458318 original size:475 final size:476
Alignment explanation
Indices: 3454930--3462962 Score: 9803
Period size: 475 Copynumber: 16.9 Consensus size: 476
3454920 AGACTGTCAC
* * *
3454930 GAGAATTGATGCTAGTCTTATTTACGGGATGAACATTGATTTTAAGGAAAATAGGGCATGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * ** * * *
3454995 GATTTCCACGCCAAAA-AAAATCCTCAGTATTGTTTATCCTAAAAAGAAGAATATTTTTATAGTG
66 GATTTCCATG-CAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * *
3455059 TCTAATCACAAAATGAATGATGATCATTACTAGAATCCATTTTTGTCTCATTTGCA-TCATGAAG
130 TCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTG-AGGCATGAAT
* *
3455123 TTAGACTTTATAAAAATTGGT-GAGAAGGAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTC
194 TTAGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTC
* * * * *
3455187 TGTCCTAATGAGAAGACTATGTTTATGGTACCTGATCCTAAAAAGAATGAGGATTAGTATGACTA
258 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTA
* * * *
3455252 TTAAAGTTTATCTCTTTTTGAGGGATGAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCAT
323 TTCAAGTTTGTCTC-CTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-T
* * *
3455317 TTTC-TGTGACTCCAAATCATCAATGTCATGTATCCTAATGGAGGGAATGTGTTTTTGGTTCCCA
386 TTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTA
* *
3455381 CTCTTGAAAAGAATGGAGACTATTAC
451 ATCTTGAAAAGAATGGAGACTATTAT
** * *
3455407 GAGAATCAATGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * * * *
3455472 TATTTCCATGCAAAAGAAAATCATTAGTGTCATTTATCCTAATGAGGAGAATGTGCTTATCGTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* * * ** * *
3455537 CTAATCACAAAATGAACGAAGTTCATCACTAGAATCCAAGTTTGTCTCATTAAAGGTACGAATTT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
* * * *
3455602 AGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCTAAAGTATCAATATCGTCTGT
196 AGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTAT
* * * * *
3455667 CCTAATGAGAAAACTTGGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTC
261 CCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTC
* * *
3455732 ATGTTTGTCTCTTTTGAGGGATGAACTTTGATTCTATCAAAAACGGAGGAAA-AAATAGCTTTTC
326 AAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAA-AGCTTTTC
* * * * * * * * *
3455796 TTGTGACACCAAATCTTTAATGTCTTGTATCCTAATGGAGGGACTGTCTTTTTTGTTTCGAATCT
390 TTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCT
* * * *
3455861 GGAAAAAAATGGAGATTGTTAT
455 TGAAAAGAATGGAGACTATTAT
* *
3455883 GAGAATTGATGCTAGTCTTATTTA-GGGAATGAACTTTGATTTTAAGGAAAATAGGGTAAGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGG-ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAA
** * * * * * *
3455947 AGATTTTGAAGGAAAACAAAAACATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATATTG
65 AGATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * ** * *
3456012 TCTAATCTCAAAACGAATGAAGTTCACTACAAGAATCCATGTTCATCTCAATTGAGGCACGAATT
130 TCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATT
* * * *
3456077 TAGATTTTATAAAAATTGGTGGGAA-AAAGCCTTTCTT-ACGAAACCAAAGTATCAATATCGTGT
195 TAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGA-GAAGCCAAAGCATCAATATCGTCT
* * * *
3456140 ATCCTTATGAGAAGACTATGTTTATAGTGCCGAATCCTGAAAAGAATGAGGATTAG--T-AC-AT
259 ATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTAT
* * * * *
3456201 GC-A---TGTCTCCTTCGAGGGATGAACTTTGATTCTATAAAAAATGGTGAAAAGAAAAGCTTTT
324 TCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * *
3456262 CTTGCGATACCAAATCATCAATGTCATGTCTCCAAATGAAGGAAATGTGTTTTTGGTT-CTAAAT
389 CTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCT-AAT
* * *
3456326 CTGGAAAAGAATAGAGACTATTAC
453 CTTGAAAAGAATGGAGACTATTAT
* *
3456350 GAGAATCGATGCTAGTCTTCA-TTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGGAA
1 GAGAATTGATGCTAGTCTT-ATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAA
* ** * * *
3456414 AGATTTCCAAGCAAAAGAGTATCATCAGTATCGTTTATCCTAAGGAGGAAAATGTTTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * *
3456479 TCTAATCACAAAATGAATGATGATCATTACTAGAA-CAGATGTTTGTCTCATTTGAGGCATGAAG
130 TCTAATCACAAAATGAATGAAGTTCATTACTAGAATC-CATGTTTGTCTCATTTGAGGCATGAAT
* * * * *
3456543 TTAGACTTTACAAAAATTAGT-GAGAAGGAAGCTTTTCTTGAGAAGCCAAAGCATCAATATCGTC
194 TTAGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTC
* * * *
3456607 TATCCTAATGAGAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGATGATTAGTATAACTA
258 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTA
* *
3456672 TTCATA-TTTGTCTCATTTGAGGGATTAACTTTGATTCTATCAAAAAACGGTGGAAAGAAAAGCT
323 TTCA-AGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCT
* *
3456736 TTTCTTGTGACACCAAATCATCAATGTCATGTATTCTAATGAAGGGAATATGTTTTTGGTTCCTA
386 TTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTA
* ** *
3456801 ATCTTGAAAAGAATGGAAACCGTTAC
451 ATCTTGAAAAGAATGGAGACTATTAT
* ** *
3456827 GAGAATCGATGCTAGTCTTATTTATAAGAT-AAGCTTTAATTTTAAGGAAAATAGGGCAAGGAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAA-CTTTGATTTTAAGGAAAATAGGGCAAGGAAA
* * * * *
3456891 AGATTTCTATGTAAAAGAAAATCATCCGTATCGTTTATCGTAATTAGGAGAATGTGTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * * * **
3456956 TCCAATCACAAAATGAATGAAGTTCATCACTTGAATCCATGTTTGTCTCATTTGAGGAACAAATT
130 TCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATT
* * * * *
3457021 TAGATTTTATAAAAATTGGTAGG-CAGAAAGCCTTTCTGGAGAAGCTAAAGTATCAATATCGTCA
195 TAGATTTTATAAAAATTGGT-GGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCT
* * * * *
3457085 ATCCTAACGAGAAGACTTGGTTTATGGTACATAATCCTGAAAAGAATGAGGATTAGTATCACTAT
259 ATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTAT
* * * * * * *
3457150 TCATGTTTATCT-CTTTCGAGAGATGAACTTCGATTCTATCAAAAATGGTAGAAA-ACAAAGCCT
324 TCAAGTTTGTCTCCTTT-GAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGA-AAAGCTT
* * * *
3457213 TTCTTGTGACACTAAATCATCAATGTCATGTATCGTAATGAAGGGAATGTGTTTTCGGTTCCCAA
387 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAA
* * * *
3457278 TGTTGAAAAAAATGGAGACTGTTAC
452 TCTTGAAAAGAATGGAGACTATTAT
** * *
3457303 GAGAATCAATGCTAGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* *
3457368 GATTTCCATGCAAAAGAAAATCATTAGTATCATTTATCGTAATAAGGAGAATGTTGTTTATCGTA
66 GATTTCCATGCAAAAGAAAATC------ATC----A--G---T-------A--TCGTTTATCCTA
* * *
3457433 ATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATTAATGAAGTTGATCACTAGAATCCATGT
107 ATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGT
* * * * * *
3457498 TTGTCTTATTTGAGGAACGAATTTAGATTTTATAAAAATTGGGGGGAAGAAAGCTTTTCTTGAGA
172 TTGTCTCATTTGAGGCATGAATTTAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGA
* * * * *
3457563 AGCCAAAGCATCAATATCGTTTATCCTAATAAGAAGACTATATTTATGGTGCCTAATCCTGTAAA
237 AGCCAAAGCATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAA
* * * * * *
3457628 GAATGGGGATTAGTATGACTGTTCATGTTTATCTCCATTGAGGGATAAACTTTGATTCTATCAAA
302 GAATGAGGATTAGTATGACTATTCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAA
** * * * * *
3457693 AAC-GTTAAACAAAAAAGATTTTCTTGCGACACAAAATCATCAATGCCATGTATCCTAATGAAGG
367 AACGGTGGAA-AGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGG
* * * * *
3457757 GAATGTCTTTTTGGTTCCGAATCTTGAAAAGAATGGAGATTGTTTT
431 GAATGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTAT
3457803 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* ** * * *
3457868 TATTTTGATGCAGAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATACTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
*
3457933 CTAATCACAAAATGAATGAAGTTCATTACTAGAAT-C-TGTTTTGTCACATTTGAGGCATGAATT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATG-TTTGTCTCATTTGAGGCATGAATT
* *
3457996 CAAATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
195 TAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
* * * *
3458061 TCCTAACGAAAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATAAGGATTAGTTTGACTATT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATT
* * * * * * *
3458126 AAAGTTTATCTCATTTGAGAGACGAACTTTGATTTTATCAAAAACGGTGGAAAGCAAAGCTTTTC
325 CAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * ** * * **
3458191 TTGTGGCAACAAGGCATCAATGTCGTGTATCTTAA-GAAAGGGAATGTGTTTTCAGTTCCTAATC
390 TTGTGACACCAAATCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTTTTGGTTCCTAATC
*
3458255 TTGAAAAGAAAGGAGACTATTAT
454 TTGAAAAGAATGGAGACTATTAT
* *
3458278 GAGAATTGATGCTAGTCTTATTTATGGGTTGAATTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
*
3458343 GATTTCCATGC--AA-AAAA--A--A--ATC----AT-C--------AGTAT-TGTTTATAGTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* * *
3458385 CTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAGTT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
* * *
3458450 AGACTTTATAAAAATTGGT-GAGAAGAAAGCCTTTCTTGAGAAGCCAAAGAATCAATATCGTCTG
196 AGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
* * * *
3458514 TCCTAATGAGAAGACTATGTTTATGGTGCTTGATCTTGAAAAGAATGAGGATTAGTATGACTATT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATT
* * * * *
3458579 CAAGTTTGTCTCTTTTGAGGGATGAACTTCGATTCTATCAAGAACAGTGGAAAGAAAAGCTCTTC
325 CAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
3458644 CTGTGACTCCAAATCATCAATGTCATGTATCCTAATGGAGGGAATGTGTTTTTGGTTCCCACTCT
390 TTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCT
*
3458709 TGAAAAGAATGGAGACTATTAC
455 TGAAAAGAATGGAGACTATTAT
** * * * *
3458731 GAGAATCAATGCTAGTTTTATTTATGAGATAAACTTTGATTTTAAAGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * *
3458796 GATTTCCATGCAAAAGAAAATCTTCAGTATCGTTTATCCTAATGAGAAGAAAGTGTTTATATTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* ** * * *
3458861 CTAATCAGAAAATGAATGAAGTTCACCACTAGAATCCGTGTTTGTCTCATTAGAGGGATGAATTT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
* *
3458926 AGATTTTATAAAAATTGGTAGG-AAGAAAGCCTTTCTTGAGAAGCTAAAGTATCAATATCGTCTA
196 AGATTTTATAAAAATTGGT-GGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
* * * ** * *
3458990 TCCTAATGAGAAAACTTGGTTTGTGGCACCTAATCCTGAAAAGAATGGGGATTAGTATGACTACT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATT
* * ** * *
3459055 CATGTTTGTCT-CTATTGAGGGATGAACTCTGATTCTATCAAAAATAGTGGAAATAATAGCTTTT
325 CAAGTTTGTCTCCT-TTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * *
3459119 CTTGTGACACCAAATCTTCAATGTCATGTATCCTAATGAAAGGAATGTCTTTTTTGTTCCGAATC
389 CTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATC
* *
3459184 TGGAAAA-AATGGAGACTGTTAT
454 TTGAAAAGAATGGAGACTATTAT
* * * **
3459206 GAGAATTGATGCTAATCTTATTTAAGGAATGAACTTTGATTTTTTGGAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
** * *
3459271 GATTTTTATGGAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* ** * * * * *
3459336 CTAATCTCAAAACAAATGAAGTTCTTTACAAGAATCCATGTTTGTCTCAATTGACGCACGAATTT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
* * * ** * ** * *
3459401 AGATTTTATAAAAATTGGTGGGAA-AAAGCTTTTTTTTTCGAAACCAAAGTGTCAATATCGTGTT
196 AGATTTTATAAAAATTGGTGGAAAGAAAGC-CTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
* * ** *
3459465 TCCTTATGAGAAGACTATGTTTATAATG-CTGAATCCTGAAAAGAATGAGCATTAGTATGACTAT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCT-AATCCTGAAAAGAATGAGGATTAGTATGACTAT
* ** ** * *
3459529 TCATGCCTGTCT-CTTTCGAGGGATGAACTTTGATTCTATCAAAAATAGTGGGAATAAAAGCTTT
324 TCAAGTTTGTCTCCTTT-GAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
** * * *
3459593 TCTTGCAATACCAAATCATCAATGTAATGTCTCCTAATG-AGGGAAATGTGTTTTTGGTT-CTAA
388 TCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGG-AATGTGTTTTTGGTTCCT-A
* *
3459656 ATCTGGAAAAGAATGGAGACTATTAC
451 ATCTTGAAAAGAATGGAGACTATTAT
* * *
3459682 GAGAATCGATACTAGCCTTCA-TTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAA
1 GAGAATTGATGCTAGTCTT-ATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAA
* * * * * *
3459746 GGATTTCCATGCAAAAGAATATCTTCAGTATCATTTATCCTAAAGAGGAGAATGTTTTTATAGTG
65 AGATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTG
* * ** *
3459811 TCTAATCACAAAATGAATGATGATCATTACTAGAATGGATGTTTGTCTCATTTGAGGCATGAAGT
130 TCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATT
* * ** * * *
3459876 TAGACTTTACAAAAATTGG-AAAGAAGGAAGCTTTTCTTGAGAAGCCAAAGCATCAATATCGACT
195 TAGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCT
* * * * * *
3459940 ATCCTAATGAAAAGACTATGTTTATGGTGCCTTATCCTGAAAAGAATGAGCATTATTATAACTAT
259 ATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTAT
* *
3460005 TCATA-TTTGTCTCCCTTGAGGGATTAACTTTGATTCTATCAAAAAACGGTGGAAAGAAAAGCTT
324 TCA-AGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATC-AAAAACGGTGGAAAGAAAAGCTT
* * *
3460069 TTCTTGTGACACCAAATCATCAATGTCATGTATTCTAACGAAGGGAATGTGTTTTTGGTTCCCAA
387 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAA
* *
3460134 TCTTGAAAAGAATGGAGACTTTTAC
452 TCTTGAAAAGAATGGAGACTATTAT
* * *
3460159 GAGAATCGATGCTAGTCTTATTTTATGAGAT-AGGCTTTGATTTTAAGGAAAATAGGGCAAGGAA
1 GAGAATTGATGCTAGTCTTA-TTTATGGGATGA-ACTTTGATTTTAAGGAAAATAGGGCAAGGAA
* * * * *
3460223 AAGATTTCTATGCAAAAAAAAAAATCATCCGTATCGTTTATCGTAATTAGGAGAATGTGTTTATA
64 AAGATTTCCATGC--AAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATA
* * * *
3460288 GTGTCTAATCACAAAATGAATGAAGTTAATCACTAGAATCCATGTTTGTCTCATTTGAGGAACGA
127 GTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGA
* * *
3460353 ATTTAGATTTTATAAAAATTGGTGGGAGGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATTGT
192 ATTTAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGT
* * * *
3460418 CTATCCTACTAAGAAGACTTTGTTTATAGTACCTAATCCTGAAAAGAATGAGGATTAGTATGACT
257 CTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACT
* * *
3460483 ATTCATGTTTGTCTCCATTGAGGGACGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
322 ATTCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* *
3460548 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATAAAGGGAATGTCTTTTTGGTT-CTGA
387 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCT-A
* * *
3460612 ATCTTGAAAAGAAAGGAGATTGTTAT
451 ATCTTGAAAAGAATGGAGACTATTAT
* * * * **
3460638 GAGAATTAATGCTAGTCTTATTTATGGGACGAACTTTGATTTTAAGAAAAATAGGGTAATAAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * *
3460703 GATTTTGCCA--CAAAAGAAATTCTTCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATAGT
66 GA-TTT-CCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
3460766 GTCTAATCACAAAATGAATGAAGTTCATTACTAGAAT-C-TGTTTTGTCACATTTGAGGCACGAC
129 GTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATG-TTTGTCTCATTTGAGGCATGAA
* *
3460829 TTTAGATTTTATAAAAATTGGT-GAGAAGGAAGCCTTTCTTGATAAGCCAAAGCATCAATATCGT
193 TTTAGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGT
* *
3460893 CTATCCTAACGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAATGAGGATTAGTATGACT
257 CTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACT
* *
3460958 ATTCAAGTTTGTCTCCTTTGAGGGACGAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTT
322 ATTCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* ** * * *
3461023 TTCTTGTGGCACCAAGGCATCAATGTCATGTATCCTAAAGAAGGGAATGCGTTTTCGGTTCCTAA
387 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAA
3461088 TCTTGAAAAGAATGGAGACTATTAT
452 TCTTGAAAAGAATGGAGACTATTAT
* * *
3461113 AAAAATTGATGCTAGTCTTATTTATGGGATGAA-TGTTGATTTTAAGGAAAATAGGGCAAGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACT-TTGATTTTAAGGAAAATAGGGCAAGGAAA
* * * ** *
3461177 AGATTTCCACGGAAAAAAAAAATCATCAGTATCGTTTATCCTAAAAAGGAGAATGTTTTTATAGT
65 AGATTTCCA-TGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGT
* * *
3461242 GTCTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAG
129 GTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAT
* *
3461307 TTAGACTTTATAAAAATTGGT-GAGAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCTTC
194 TTAGATTTTATAAAAATTGGTGGA-AAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTC
* * * **
3461371 TATCCTAATGAGAAGACTTTGTTTATGGTACCGAATCCTAAAAAGAAAAAGGATTAGTATGACTA
258 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTA
* *** *
3461436 TTGAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAATAATTG-AAGAAAAAGCTT
323 TTCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAAGCTT
* * ** * ** * *
3461500 TTCTTG-CAGCACTAAGGCGTCAATGTTGTGTATCCTAAAGAAGGGAATGTGTTTTCGGTTCCTA
387 TTCTTGTGA-CACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTA
3461564 ATCTTGAAAAGAATGGAGACTATTAT
451 ATCTTGAAAAGAATGGAGACTATTAT
* *
3461590 GAGAATTGATGCTAGTCTTATTTATGGGAAGAACTTTGATTTTAAGGAAAGTAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * * *
3461655 GATTTTCACGCAAAAGAAAATCATCAATATCGTTTATCATAATGAGGAGAATGTGTTTATAGTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* * *
3461720 CTAATCACAAAATGAATGAAGTTGATCACTAGAAT-CATGTTTGTCTCATTTGAGGAATGAATTT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
* * *
3461784 AGATTTCATAAAAATTGGTGGGAAA-AAAACCTTTCTTGAGAAGCCAAAGCATCAATATCTTCTA
196 AGATTTTATAAAAATTGGT-GGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
* * * * *
3461848 TCCTAATGAGAAGACTTTGTTTATAGTACCTAATTCTGAAAAAAATGGGGATTAGTATGACTATT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATT
* * * * *
3461913 CATGTTTGTCTCCATAGAGGGATGAACTTTGATTCTATCAAAAAC-GTTGAACAAAAAAGCTTTT
325 CAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAA-AGAAAAGCTTTT
* * * *
3461977 CTTGTGATACCAAATCGTCAATGTCATGTATCCTAATGAAGGGAATGTCTTTTTGGTTCCGAATC
389 CTTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATC
* * *
3462042 TGGAAAAGAATGGAGATTGTTAT
454 TTGAAAAGAATGGAGACTATTAT
*
3462065 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
** * *
3462130 GATTTTGATGCAAAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGAATGTGTTTATACTGT
66 GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
* * *
3462195 CTAATCACAAAATGAATGAAGTTCATTACTAGAAT--TTGTTTTGTCACATTTGCGGCATGAATT
131 CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATG-TTTGTCTCATTTGAGGCATGAATT
*
3462258 CAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
195 TAGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTA
** * *
3462323 TCCTAACCAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAAAAAGAGGATTAGTATGACTATT
260 TCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATT
3462388 CAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
325 CAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* ** * * * * *
3462453 TTGTGGCACCAAGGCATCAATGTCGTGTATCTTAAGGAAGGGAATGTGTTTTCGATTCCTAATCT
390 TTGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCT
*
3462518 TGAAAAGAAAGGAGACTATTAT
455 TGAAAAGAATGGAGACTATTAT
*
3462540 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAGGAAAA
1 GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
* * ** **
3462605 GATTTCCATGCAAAAAAAAAATCATCAGTATTGTTTATCCTAAAAAAAAGAATG-GTTTTATAGT
66 GATTTCCATGC-AAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTG-TTTATAGT
* * *
3462669 GTTTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACGAAT
129 GTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAAT
* * * * * *
3462734 TTAGATTTTATAAAAATTGGCAGG-AAGAAATCCTTTCTTGTGAAGCTAAAGTATCAATATCCTC
194 TTAGATTTTATAAAAATTGG-TGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTC
* * * *
3462798 TATCCTAATAAGAAGACTTGGTTTATGGTACCTAATCTTGAAAAGAATG-GAGATTAGTATGACT
258 TATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAG-GATTAGTATGACT
* * *
3462862 ATTCATGTTTGTCTCCTTTGAGGGATGGACTTTGATTC--T-AAAAACGGTGGAAAGAATAGCTT
322 ATTCAAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* *
3462924 TTCTTGTGACACCAAATCTTCAATGTCATGTATCTTAAT
387 TTCTTGTGACACCAAATCATCAATGTCATGTATCCTAAT
3462963 TAAAAGCTCA
Statistics
Matches: 6493, Mismatches: 915, Indels: 299
0.84 0.12 0.04
Matches are distributed among these distances:
452 46 0.01
453 333 0.05
454 3 0.00
455 2 0.00
456 4 0.00
460 1 0.00
461 1 0.00
462 5 0.00
466 8 0.00
467 294 0.05
468 90 0.01
469 1 0.00
470 2 0.00
471 5 0.00
472 9 0.00
473 6 0.00
474 92 0.01
475 1881 0.29
476 1512 0.23
477 1301 0.20
478 107 0.02
479 125 0.02
480 245 0.04
482 3 0.00
485 1 0.00
488 1 0.00
490 1 0.00
491 1 0.00
494 3 0.00
498 1 0.00
499 6 0.00
500 399 0.06
501 4 0.00
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.33
Consensus pattern (476 bp):
GAGAATTGATGCTAGTCTTATTTATGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAA
GATTTCCATGCAAAAGAAAATCATCAGTATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
CTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAATTT
AGATTTTATAAAAATTGGTGGAAAGAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTAT
CCTAATGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTC
AAGTTTGTCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
TGTGACACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCTT
GAAAAGAATGGAGACTATTAT
Found at i:3460620 original size:159 final size:161
Alignment explanation
Indices: 3459019--3462962 Score: 574
Period size: 159 Copynumber: 24.9 Consensus size: 161
3459009 TTTGTGGCAC
* * * * *
3459019 CTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATGTTTGTCTCTATTGAGGGATGAACTC
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* * * * * *
3459084 TGATTCTATCAAAAAT-AGTGGAAATAATAGCTTTTCTTGTGACACCAAATCTTCAATGTCATGT
66 TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
* * *
3459148 ATCCTAAT-GAAAGGAATGTCTTTTTTGT-T
131 ATCCTAATAGAAGGGAATGTCTTTATGGTGT
* * ** * * ** * * * *
3459177 CCGAAT-CTGGAAAA-AATG-GAGACT-GTTATGAGAATTGATGCTAATCT-TATTTAAGGAATG
1 -CTAATCCT-GAAAAGAATGAG-GATTAG-TATGACTATTCATGTTTGTCTCCA-TTGAGGGACG
* * ** * * * * * ** *
3459237 AACTTTGATTTTTTGGAAAATAGG-GCAAGGAAAAGATTTT-TATG-GAAAAGAAAATCATCAAT
61 AACTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCT-TGTG-ACACCAAAGCATCAAT
* * * *
3459299 ATCGTTTATCCTAAT-G-AGGAGAATGTGTTTATAGTGT
124 ATCATGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * ** ** ** * * * *
3459336 CTAAT-CTCAAAACAAATGAAG-TTCTTTACAAGAATCCATGTTTGTCTCAATTGACGCACGAA-
1 CTAATCCTGAAAA-GAATGAGGATT-AGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAAC
* * * * * * **
3459398 TTTAGATTTTAT-AAAAATTGGTGG-GA-AAAAGCTTTTTTTTTCGAAACCAAAGTGTCAATATC
64 TTT-GATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGT-GACACCAAAGCATCAATATC
* * * * * * **
3459460 GTGTTTCCTTATGAGAA--GACTATGTTTATAATG-
127 ATGTATCCTAAT-AGAAGGGAATGTCTTTATGGTGT
* ** * *
3459493 CTGAATCCTGAAAAGAATGAGCATTAGTATGACTATTCATGCCTGTCT-CTTTCGAGGGATGAAC
1 CT-AATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATT-GAGGGACGAAC
* * * ** * * * *
3459557 TTTGATTCTATCAAAAAT-AGTGGGAATAAAAGCTTTTCTTGCAATACCAAATCATCAATGTAAT
64 TTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCAT
* * *
3459621 GTCTCCTAAT-G-AGGGAAATGTGTTTTTGGT-T
129 GTATCCTAATAGAAGGG-AATGTCTTTATGGTGT
* * * * * ** * * * *
3459652 CTAAAT-CTGGAAAAGAATG-GAGACTATTACGA-GAATCGATACTAGCCTTCATT-ATGGGATG
1 CT-AATCCT-GAAAAGAATGAG-GATTAGTATGACTATTC-ATGTTTGTCTCCATTGA-GGGACG
* *** * * * * * * * * * ** * * *
3459713 AACTTTGATTTTAAGGAAAATAGG-GCAAGGAAAGGATTTCCATG-CAAAAGAATATCTTCAGTA
61 AACTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAA-AGCATCAATA
* * *
3459776 TCATTTATCCTAA-AG-AGGAGAATGTTTTTATAGTGT
125 TCATGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * ** * *
3459812 CTAATCAC--AAAATGAATGATGATCATTACTAGA--ATGGATGTTTGTCT-CATTTGAGGCATG
1 CTAATC-CTGAAAA-GAATGAGGATTAGTA-T-GACTATTCATGTTTGTCTCCA-TTGAGGGACG
* * *
3459872 AAGTTAGACTT-TA-CAAAAAT---TGGAAAGAAGGAAGCTTTTCTTGAGA-AGCCAAAGCATCA
61 AACTTTGA-TTCTATCAAAAATCGGTGGAAAGAA--AAGCTTTTCTTGTGACA-CCAAAGCATCA
* ** * * * *
3459931 ATATCGA-CTATCCTAAT-GAAAAGACTATGTTTATGGTGC
122 ATATC-ATGTATCCTAATAGAAGGGAATGTCTTTATGGTGT
* * * * * * **
3459970 CTTATCCTGAAAAGAATGAGCATTATTATAACTATTCATATTTGTCTCCCTTGAGGGATTAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* * *
3460035 TGATTCTATCAAAAAACGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGT
66 TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
* * * *
3460100 ATTCTAA-CGAAGGGAATGTGTTTTTGGT-T
131 ATCCTAATAGAAGGGAATGTCTTTATGGTGT
* * * * * * * * * * *
3460129 CCCAATCTTGAAAAGAATG-GAGACTT-TTACGA-GAATCGATGCTAGTCT-TATTTTA-TGA-G
1 -CTAATCCTGAAAAGAATGAG-GA-TTAGTATGACTATTC-ATGTTTGTCTCCA-TTGAGGGACG
* *** * * * * ** * ** *
3460188 ATAGGCTTTGATTTTAAGGAAAATAGG-GCAAGGAAAAG-ATTTCTATGCAAAAAAAAAAATCAT
61 A-A--CTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCT-TG--TGACACCAAAGCAT
** * * * * * *
3460251 CCGTATCGTTTATCGTAATTAG--GAGAATGTGTTTATAGTGT
120 CAATATCATGTATCCTAA-TAGAAGGGAATGTCTTTATGGTGT
* * * *
3460292 CTAATCAC--AAAATGAATGAAG-TTA--ATCACTAGAATCCATGTTTGTCT-CATTTGAGGAAC
1 CTAATC-CTGAAAA-GAATGAGGATTAGTATGACT---ATTCATGTTTGTCTCCA-TTGAGGGAC
* * * * * *
3460351 GAA-TTTAGATTTTAT-AAAAATTGGTGG-GAGGAAAGCCTTTCTTGAGA-AGCCAAAGCATCAA
60 GAACTTT-GATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACA-CCAAAGCATCAA
** * * * * * * **
3460412 TATTGTCTATCCTACTAAGAA--GACTTTGTTTATAGTAC
123 TATCATGTATCCTAAT-AGAAGGGAATGTCTTTATGGTGT
3460450 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* *
3460515 TGATTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAATCATCAATGTCATGT
66 TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
*
3460579 ATCCTAATA-AAGGGAATGTCTTTTTGGT-T
131 ATCCTAATAGAAGGGAATGTCTTTATGGTGT
* * ** * * * * *
3460608 CTGAATCTTGAAAAGAAAG-GAGATT-GTTATGAGAATTAATGCTAGTCT-TATTTATGGGACGA
1 CT-AATCCTGAAAAGAATGAG-GATTAG-TATGACTATTCATGTTTGTCTCCATTGA-GGGACGA
* ** * * * ** ** * *
3460670 ACTTTGATTTTAAGAAAAATAGG-GTAATA-AAAAG--ATT-TTGCCACAAAAGAAATTCTTCAA
62 ACTTTGATTCTATCAAAAATCGGTGGAA-AGAAAAGCTTTTCTTGTGAC--ACCAAA-GCATCAA
* * * *
3460730 TATCGTTTATCCTAAT-G-AGGAGAATGTGTTTATAGTGT
123 TATCATGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * *
3460768 CTAATCAC--AAAATGAATGAAG-TTCA-T-T-ACTAGAATC-TGTTTTGTC-ACATTTGAGGCA
1 CTAATC-CTGAAAA-GAATGAGGATT-AGTATGACT--ATTCATG-TTTGTCTCCA-TTGAGGGA
* * * *
3460825 CG-ACTTTAGATTTTAT-AAAAATTGGT-GAGAAG-GAAGCCTTTCTTGAT-A-AGCCAAAGCAT
59 CGAACTTT-GATTCTATCAAAAATCGGTGGA-AAGAAAAGCTTTTCTTG-TGACA-CCAAAGCAT
* * * * * * *
3460884 CAATATCGTCTATCCTAACGAGAA--GACTTTGTTTATGGTGC
120 CAATATCATGTATCCTAA-TAGAAGGGAATGTCTTTATGGTGT
* * *
3460925 CTAATCCTGAAAAAAATGAGGATTAGTATGACTATTCAAGTTTGTCTCCTTTGAGGGACGAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* * * *
3460990 TGATTCTATCAAAAA-CGATGGAAAGAAAAGCTTTTCTTGTGGCACCAAGGCATCAATGTCATGT
66 TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
3461054 ATCCTAA-AGAAGGGAATG-CGTTT-TCGGT-T
131 ATCCTAATAGAAGGGAATGTC-TTTAT-GGTGT
* * * * ** * * * * * *
3461083 CCTAATCTTGAAAAGAATG-GAGACTATTATAAAAATTGATGCTAGTCT-TATTTATGGGATGAA
1 -CTAATCCTGAAAAGAATGAG-GATTAGTATGACTATTCATGTTTGTCTCCATTGA-GGGACGAA
* *** * * * * ** * ** * *
3461146 -TGTTGATTTTAAGGAAAAT-AG-GGCAAGAAAAAGATTTCCACG-GAAAAAAAAAATCATCAGT
63 CT-TTGATTCTATCAAAAATCGGTGGAAAG-AAAAGCTTTTCTTGTG--ACACCAAAGCATCAAT
* * * *
3461207 ATCGTTTATCCTAA-A-AAGGAGAATGTTTTTATAGTGT
124 ATCATGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * * * *
3461244 CTAATCAC--AAAATGAATGATGATCATTACTAGA--ATCCATGTTTGTCT-CATTTGAGGCATG
1 CTAATC-CTGAAAA-GAATGAGGATTAGTA-T-GACTATTCATGTTTGTCTCCA-TTGAGGGACG
* * * * *
3461304 AAGTTAGACTT-TAT-AAAAATTGGT-GAGAAG-AAAGCCTTTCTTGAGA-AGCCAAAGCATCAA
61 AACTTTGA-TTCTATCAAAAATCGGTGGA-AAGAAAAGCTTTTCTTGTGACA-CCAAAGCATCAA
* * * * * **
3461364 TATCTTCTATCCTAATGAGAA--GACTTTGTTTATGGTAC
123 TATCATGTATCCTAAT-AGAAGGGAATGTCTTTATGGTGT
* * ** * * * *
3461402 CGAATCCTAAAAAGAAAAAGGATTAGTATGACTATTGAAGTTTGTCTCCTTTGAGGGATGAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
** * * * * * * **
3461467 TGATTCTATCAAAAAT-AATTG-AAGAAAAAGCTTTTCTTG-CAGCACTAAGGCGTCAATGTTGT
66 TGATTCTATCAAAAATCGGTGGAAAG-AAAAGCTTTTCTTGTGA-CACCAAAGCATCAATATCAT
*
3461529 GTATCCTAA-AGAAGGGAATGTGTTT-TCGGT-T
129 GTATCCTAATAGAAGGGAATGTCTTTAT-GGTGT
* * * ** * * * * * *
3461560 CCTAATCTTGAAAAGAATG-GAGACTATTATGAGAATTGATGCTAGTCT-TATTTATGGGAAGAA
1 -CTAATCCTGAAAAGAATGAG-GATTAGTATGACTATTCATGTTTGTCTCCATTGA-GGGACGAA
* *** * * * * * ** ** * ** * *
3461623 CTTTGATTTTAAGGAAAGTAGG-GCAAGGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCG
63 CTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCA
* * * *
3461687 TTTATCATAAT-G-AGGAGAATGTGTTTATAGTGT
128 TGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * * *
3461720 CTAATCAC--AAAATGAATGAAG-TT-G-ATCACTAGAATCATGTTTGTCT-CATTTGAGGAATG
1 CTAATC-CTGAAAA-GAATGAGGATTAGTATGACT--ATTCATGTTTGTCTCCA-TTGAGGGACG
* * *
3461779 AA-TTTAGATT-TCAT-AAAAATTGGTGGGAAA-AAAA-CCTTTCTTGAGA-AGCCAAAGCATCA
61 AACTTT-GATTCT-ATCAAAAATCGGT-GGAAAGAAAAGCTTTTCTTGTGACA-CCAAAGCATCA
* * * * * * **
3461838 ATATCTTCTATCCTAATGAGAA--GACTTTGTTTATAGTAC
122 ATATCATGTATCCTAAT-AGAAGGGAATGTCTTTATGGTGT
* * * * *
3461877 CTAATTCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTGTCTCCATAGAGGGATGAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* * * * * *
3461942 TGATTCTATCAAAAA-C-GTTGAACAAAAAAGCTTTTCTTGTGATACCAAATCGTCAATGTCATG
66 TGATTCTATCAAAAATCGGTGGAA-AGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATG
*
3462005 TATCCTAAT-GAAGGGAATGTCTTTTTGGT-T
130 TATCCTAATAGAAGGGAATGTCTTTATGGTGT
* ** * * * * * *
3462035 CCGAAT-CTGGAAAAGAATG-GAGATT-GTTATGAGAATTGATGCTAGTCT-TATTTATGGGATG
1 -CTAATCCT-GAAAAGAATGAG-GATTAG-TATGACTATTCATGTTTGTCTCCATTGA-GGGACG
* *** ** * * * ** ** * ** *
3462096 AACTTTGATTTTAAGGAAAATAAG-GCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAATAT
61 AACTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATAT
* * * **
3462160 CGTTTATCCTAAT-G-AGGAGAATGTGTTTATACTGT
126 CATGTATCCTAATAGAAGG-GAATGTCTTTATGGTGT
* * * * *
3462195 CTAATCAC--AAAATGAATGAAG-TTCATTACTAGA--ATT--TGTTTTGTC-ACATTTGCGGCA
1 CTAATC-CTGAAAA-GAATGAGGATT-AGTA-T-GACTATTCATG-TTTGTCTCCA-TTGAGGGA
* * * * * *
3462252 TGAA-TTCAGATTTTAT-AAAAATTGGTGGAAAG-AAAGCCTTTCTTGAGA-AGCCAAAGCATCA
59 CGAACTT-TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACA-CCAAAGCATCA
* * * * * * *
3462313 ATATCGTCTATCCTAACCAGAA--GACTTTGTTTATGGTGC
122 ATATCATGTATCCTAA-TAGAAGGGAATGTCTTTATGGTGT
* * * * *
3462352 CTAATCCTGAAAAAAAAGAGGATTAGTATGACTATTCAAGTTTGTCTCCTTTGAGGGATGAACTT
1 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
* * * *
3462417 TGATTCTATCAAAAA-CGGTGGAAAGAAAAGCTTTTCTTGTGGCACCAAGGCATCAATGTCGTGT
66 TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
* * * *
3462481 ATCTTAA-GGAAGGGAATGTGTTT-TCGAT-T
131 ATCCTAATAGAAGGGAATGTCTTTAT-GGTGT
* * * * ** * * * * * *
3462510 CCTAATCTTGAAAAGAAAG-GAGACTATTATGAGAATTGATGCTAGTCT-TATTTATGGGATGAA
1 -CTAATCCTGAAAAGAATGAG-GATTAGTATGACTATTCATGTTTGTCTCCATTGA-GGGACGAA
* ** * * * * * * ** * ** * * *
3462573 CTTTGATTTTAAGAAAAATAGG-GCAAGGAAAAGATTTCCATGCAAAAAAAAAATCATCAGTATT
63 CTTTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTG-TGACACCAAAGCATCAATATC
* * * ** *
3462637 GTTTATCCTAA-AAAAAAGAATGGT-TTTATAGTGT
127 ATGTATCCTAATAGAAGGGAAT-GTCTTTATGGTGT
* * * * *
3462671 TTAATCAC--AAAATGAATGAAG-TTCATTACTAGA--ATCCATGTTTGTCT-CATTTGAGGTAC
1 CTAATC-CTGAAAA-GAATGAGGATT-AGTA-T-GACTATTCATGTTTGTCTCCA-TTGAGGGAC
* * * * * * *
3462730 GAA-TTTAGATTTTAT-AAAAATTGGCAGG-AAG-AAATCCTTTCTTGTGA-AGCTAAAGTATCA
60 GAACTTT-GATTCTATCAAAAATCGG-TGGAAAGAAAAGCTTTTCTTGTGACA-CCAAAGCATCA
* * * * **
3462790 ATATCCTCTATCCTAATAAGAA--GACT-TGGTTTATGGTAC
122 ATATCATGTATCCTAAT-AGAAGGGAATGT-CTTTATGGTGT
* * * *
3462829 CTAATCTTGAAAAGAATG-GAGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGGACT
1 CTAATCCTGAAAAGAATGAG-GATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACT
* * * *
3462893 TTGATTC--T-AAAAA-CGGTGGAAAGAATAGCTTTTCTTGTGACACCAAATCTTCAATGTCATG
65 TTGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATG
*
3462954 TATCTTAAT
130 TATCCTAAT
3462963 TAAAAGCTCA
Statistics
Matches: 2685, Mismatches: 773, Indels: 657
0.65 0.19 0.16
Matches are distributed among these distances:
154 2 0.00
155 7 0.00
156 70 0.03
157 266 0.10
158 787 0.29
159 1083 0.40
160 320 0.12
161 72 0.03
162 70 0.03
163 5 0.00
164 3 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (161 bp):
CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCATTGAGGGACGAACTT
TGATTCTATCAAAAATCGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATATCATGT
ATCCTAATAGAAGGGAATGTCTTTATGGTGT
Found at i:3463823 original size:20 final size:19
Alignment explanation
Indices: 3463798--3463835 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
3463788 CTGCCAGTTT
3463798 CATGTATCGATACAATTGTC
1 CATGTATCGATAC-ATTGTC
*
3463818 CATGTATTGATACATTGT
1 CATGTATCGATACATTGT
3463836 ATCGATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (19 bp):
CATGTATCGATACATTGTC
Found at i:3464020 original size:22 final size:22
Alignment explanation
Indices: 3463973--3464021 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
3463963 ATTTTTTACT
** *
3463973 TAAAAACATTTGAATTAAGGTT
1 TAAAAACATTTGAATTAAACTC
3463995 TAAAAACATTTG-ATTATAACTC
1 TAAAAACATTTGAATTA-AACTC
3464017 TAAAA
1 TAAAA
3464022 CTTTCATTGA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 4 0.17
22 19 0.83
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (22 bp):
TAAAAACATTTGAATTAAACTC
Found at i:3471223 original size:20 final size:21
Alignment explanation
Indices: 3471198--3471238 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
3471188 CTACCAGTTT
3471198 CATGTATCGATACAAT-TATC
1 CATGTATCGATACAATGTATC
3471218 CATGTATCGATACAATGTATC
1 CATGTATCGATACAATGTATC
3471239 GATACAAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (21 bp):
CATGTATCGATACAATGTATC
Found at i:3471237 original size:13 final size:13
Alignment explanation
Indices: 3471219--3471245 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
3471209 ACAATTATCC
3471219 ATGTATCGATACA
1 ATGTATCGATACA
3471232 ATGTATCGATACA
1 ATGTATCGATACA
3471245 A
1 A
3471246 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:3471653 original size:20 final size:20
Alignment explanation
Indices: 3471628--3471676 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
3471618 GCTAGTCTTA
3471628 TTTAAGGAATGAATTTTGAT
1 TTTAAGGAATGAATTTTGAT
3471648 TTTAAGGAATGAATTTTGAT
1 TTTAAGGAATGAATTTTGAT
3471668 TTTAAGGAA
1 TTTAAGGAA
3471677 AATAGGGCAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.00, G:0.20, T:0.43
Consensus pattern (20 bp):
TTTAAGGAATGAATTTTGAT
Found at i:3472614 original size:475 final size:473
Alignment explanation
Indices: 3471656--3473184 Score: 1984
Period size: 475 Copynumber: 3.2 Consensus size: 473
3471646 ATTTTAAGGA
* *
3471656 ATGAATTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGGAAAAGAAAATCATCAAT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAAT
* * *
3471721 ATCGTTTATCCCAATGAGGAGAATGTTTTTATAGTGTCTAATCTCAAAATGAATGAAGTTCATTA
66 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGTTCATTA
* *
3471786 CAAGAATCCATGTTTGTCTCAATTGAGGCACGAATTTAGATTTTATAAAAATTGGTGAGCAA-AA
131 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGA-TTTATAAAAATTGGTGAG-AAGAA
* * * *
3471850 GCCTTTCTT-ACGAAACCAAAGTATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATAGT-
194 GCCTTTCTTGA-GAAGCCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTA
* * ** * *
3471913 GCTGAATCCTGAAAAGAATGAGGATTAGTATGACTATTAAT-CATGTCTCCTTTAAGGGATGCAC
258 CCT-AATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAAC
* *
3471977 TTTGATTCTACCAAAAATGG-TGAAA-AGAAAGCCTTTTCTTGCGATACCAAATCATCAATGTCA
322 TTTGATTCTATCAAAAATGGTTGAAAGA-AAAG-CTTTTCTTACGATACCAAATCATCAATGTCA
* * * ** **
3472040 TGTCTCCTAATGAAGGAAATGTGTTTTTGGTTCTAAATCAAGAAACGAATGGAGACTATTACAAG
385 TGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAA-GAATGGAGACTATTATGAG
* *
3472105 AATCGATGCTAGTCGTCA-TTATGGG
449 AATCGATGCTAGTC-TTATTTATGAG
* * * * **
3472130 ATGAACTTTGACTTTAAGGAAAATAGGACAAGGAAAAGATTTTAATGTAAAAGAAAATCATCTGT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAAT
* ** * * *
3472195 ATCATTTATCCTAAAAAGGAGAATGTTTTTATAGTGTCTAATCACAAAATGAATGATGATCATTA
66 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGTTCATTA
* * * * *
3472260 CTAGAATCCATGTTTCTCTCATTTGAGGCATGAAGTTAGACTTTACAAAAATTAGTGAGAAGGAA
131 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGA-TTTATAAAAATTGGTGAGAA-GAA
* * *
3472325 GCCTTTCTTGAGAAGCCAAAGCATCAATATCGTCTATCCTAATGAAAAGACTACGTTTATGGTAC
194 GCCTTTCTTGAGAAGCCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTAC
* * *
3472390 CTTATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTGGAGGGACGAACTT
259 CTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTT
* * *
3472455 TGATTCTATCAAAAATGGTTGAAAGAAAAG-TTTTCCT-CTGACACCAAATCATGAATGTCATGT
324 TGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTAC-GATACCAAATCATCAATGTCATGT
* ** * * *
3472518 ATTCTAATGAAGGGAACATGTTTTTGGTTCCCAATCTTGACAAGAATGGTGACTATTATGAGAGT
388 ATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTGA-AAGAATGGAGACTATTATGAGAAT
3472583 CGATGCTAGTCTTATTTATGAG
452 CGATGCTAGTCTTATTTATGAG
* **
3472605 ATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAAT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAAT
** * ** *
3472670 ATCGTTTATTATAATTAGGAGAATGTGTTTGCAGTGTCTAATCACAAAATGAATGAAGTTCATCA
66 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGTTCATTA
* * * *
3472735 -TAAGAATCCATGTTTGTCACATTTGAGACACGAATTTTGATATTATAAAAATTGGTGGGAAGAA
131 CT-AGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGAT-TTATAAAAATTGGTGAGAAG-A
** *
3472799 AGCCTTTCTTGTTAAGCCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTTTGTTTATGGTA
193 AGCCTTTCTTGAGAAGCCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTA
** * *
3472864 CCTAATATTGAAAAGAATGGGGATTAGTGTGACTATTCATGTTTGTCT-CTATTGAGGGATGAAC
258 CCTAATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCT-TTGAGGGATGAAC
* *
3472928 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGATACCAAATCATTAATGTCATG
322 TTTGATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTACGATACCAAATCATCAATGTCATG
* * * * *
3472993 TATCCTATTGAAGGGAATGTCTTTTTGGTTCCAAATCTTGAGAAGAAAGGAGATTGTTATGAGAA
387 TATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTGA-AAGAATGGAGACTATTATGAGAA
*
3473058 TTGATGCTAGTCTTATTTAT-AGG
451 TCGATGCTAGTCTTATTTATGA-G
*** *
3473081 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGGCACAAAAGAAAATCATCATT
1 ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAAT
3473146 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCT
66 ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCT
3473185 GTAGACACCT
Statistics
Matches: 911, Mismatches: 127, Indels: 32
0.85 0.12 0.03
Matches are distributed among these distances:
473 2 0.00
474 175 0.19
475 490 0.54
476 233 0.26
477 10 0.01
478 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (473 bp):
ATGAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGCAAAAGAAAATCATCAAT
ATCGTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGTTCATTA
CTAGAATCCATGTTTGTCTCATTTGAGGCACGAATTTAGATTTATAAAAATTGGTGAGAAGAAGC
CTTTCTTGAGAAGCCAAAGTATCAATATCGTCTATCCTAATGAGAAGACTATGTTTATGGTACCT
AATCCTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTG
ATTCTATCAAAAATGGTTGAAAGAAAAGCTTTTCTTACGATACCAAATCATCAATGTCATGTATC
CTAATGAAGGGAATGTGTTTTTGGTTCCAAATCTTGAAAGAATGGAGACTATTATGAGAATCGAT
GCTAGTCTTATTTATGAG
Found at i:3478506 original size:947 final size:948
Alignment explanation
Indices: 3476606--3479129 Score: 3159
Period size: 947 Copynumber: 2.7 Consensus size: 948
3476596 ACGTTGCGAC
* *
3476606 AGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAAT-C-TGTTTTGTCACATTTGAGGCAC
1 AGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATG-TTTGTCTCATTTGAGGTAC
***
3476669 GAATTTAGATTTTATAAAAATTGGTTAAAAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATC
65 GAATTTAGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATC
* * * *
3476734 GTCTATCCTAAAGAGAAGACTTTGTTTATGGTGCGTAATCTTGAAAAGAATAAGGATCAGTATGA
130 GTCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATGA
* ** * * *
3476799 CTATTCAAGTTTGCCTCCTTTGAGGGATGAACTTTGTTTCCATCAAAAATGGTGGAAAGAAAAGC
195 CTATTC-AGTCTATCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
**** ** * * ** * *
3476864 TTTTCTTGCGGCACCAAGGCATCAATGTCGTGTATCCTAAGGAAATGAATGTGTTTTCGGTTCCT
259 TTTTCTTGTAATACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCA
* *
3476929 AATCTTGAAAAGAATGGAGACTATTATGAGAATTGATCCTAGTCTTATTTATGAGATGAACTTTG
324 AATCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTAGTCTTATTTATGAGATGAACTTTG
*
3476994 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTCGCGCA-AAAAAAAAAATCATCAGTATCGTTT
389 ATTTTAAGGAAAATAGGGCAAGGAAAAGATTTT---G-ATGAAAAAAAAATCATCAGTATCGTTT
* ** * *
3477058 ATCCTAA-AAGAGAGAATGTT-TTTATAGTATCTAATCACAAAATGAATAATGATCGTTACTAGA
450 ATCCTAATAAG-GAGAAT-TTGTTTATAGTGTCTAATCACAAAACAAATAATGATCATTACAAGA
* * *
3477121 ATCCATGTTTGCCTCATTTGAGGCATCAAGTTAGACTTTATAAAAATTGGTGAGAAGAAACCTTT
513 ATCAATGTTTGCCTCATATGAGGCATCAAGTTAGACTTTATAAAAATTAGTGAGAAGAAACCTTT
* *
3477186 CTTGAGAAGCCAAAGCATCAATATCATCTGTCCTAATATGAAGACTATGTTTATGGTGCCTAATT
578 CTTGAGAAGCCAAAGCATCAATATCATCTATCCT-ATATGAAGACTATGTTTATGGTGCCTAATC
* ** *
3477251 CTGAAAAGAATGAGGATTAGTATGACTATTCATGTTTGTCTCCTTTGAGGGATGAACTTTGATTA
642 CTAAAAAGAATGAGGATTAGTATGACTATTCATGCATGTCTCCTTCGAGGGATGAACTTTGATTA
* * *
3477316 TATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGTGACTCCAAATCATCAATGTCATGTATCCTAA
707 TATAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACTCCAAATCATCAATGTCATGTATCCTAA
* * * * * * * * *
3477381 TTGAGGGAACGTGTTTTTGGTTCGCATTCTTGAAAATAGTGGAGACTGTTACGAGAATCGATCCT
772 TTGAGGAAACGTGTTTTTGGTTCGAAATCTAGAAAAGAATGCAAACTATTACGAGAATCGATCCT
* *
3477446 AGTCTTATTTATGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAA
837 AGCCTTATTTACGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAA
*
3477511 AAGAAAATCATCAGTATCATTTATCCTAATGAGGAGAAGGTGTTTAT
902 AAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAAGGTGTTTAT
* ** * * *
3477558 AGTGTCTAATGACAAAATGAATGAAGTTCATCCCTAGAATCCATGTTTGTTTCATTTGAAGTATG
1 AGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACG
** * * **
3477623 AATTTAGATTTTATAAAAATTGGTGGGAAGAAAGTGTTTCTTAAGAAGCTAAAGTATCAATATAA
66 AATTTAGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATCG
* * * * *
3477688 TATATCCTAATGAGAAGACTTTGTTTCTAGTACCTAATCTTGAAAAGAATGGGGATTAGTATGAC
131 TCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATGAC
* * *
3477753 TATTCA-TCTATCTCTTTTGAGGGACGAACTTTGATTCTATAAAAAACGGTGGAAAGAAAAGCTT
196 TATTCAGTCTATCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
** * *
3477817 TTCTTGTAATACCAAATCATCAACCTCATGCATCCTAATGAAGGGAATGTCTTTTTGGTTCCAAA
261 TTCTTGTAATACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAA
** * * *
3477882 TCAGGAAAAGAATGGAGACTGTTATGAGAATTGATGCTAGCCTTATTTAGGGGATGAACTTTGAT
326 TCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTAGTCTTATTTATGAGATGAACTTTGAT
* * * *
3477947 TTTAAGGAAAATAGGACAAGGAAAAGATTTTGATGGAAAAAAAATCATCAATATTGTTTATCCTA
391 TTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGAAAAAAAAATCATCAGTATCGTTTATCCTA
* * *
3478012 ATGAGGAGAATTTGTTTATAGTGTCTAATCTCAAAACAAATGAA-GTTCATTACAAGAATCAATG
456 ATAAGGAGAATTTGTTTATAGTGTCTAATCACAAAACAAAT-AATGATCATTACAAGAATCAATG
* * * * *
3478076 TTTGTCTCATATGAGGCA-CTAATTTTGA-TTTATAAAAATTAGTGGGAA-AAAGCGTTTCTT-A
520 TTTGCCTCATATGAGGCATC-AAGTTAGACTTTATAAAAATTAGTGAGAAGAAA-CCTTTCTTGA
** * *
3478137 CGAAGCCAAAGTGTTAATATCATGTATCCT-TATGAGATGACTATGTTTATGGTG-CTGAATCCT
583 -GAAGCCAAAGCATCAATATCATCTATCCTATATGA-A-GACTATGTTTATGGTGCCT-AATCCT
* *
3478200 AAAAAGAATGAGGATTAGTGTGACTATTCATGCATGTCTCCTTCGAGGGATGAACTTTGATTCTA
644 AAAAAGAATGAGGATTAGTATGACTATTCATGCATGTCTCCTTCGAGGGATGAACTTTGATTATA
*
3478265 TAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-TACCAAATCATCAATGTCATGTCTCCTAA-
709 TAAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACT-CCAAATCATCAATGTCATGTATCCTAAT
* * * *
3478328 TGAAGGAAATGTGTTTTTGGTTCTAAATCTAGAAAGGAATGCAAACTATTACGAGAATCGATGCT
773 TG-AGGAAACGTGTTTTTGGTTCGAAATCTAGAAAAGAATGCAAACTATTACGAGAATCGATCCT
*
3478393 AGCCTTCA-TTACGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCA
837 AGCCTT-ATTTACGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCA
* * *
3478457 AAAGAAAATCATTAGTATCATTTATCCTAAAGAGGAGAATGTTTTTAT
901 AAAGAAAATCATCAGTATCATTTATCCTAAAGAGGAGAAGGTGTTTAT
* * *
3478505 AGTGTCTAATCACAAAATGAATGATGATCATTACTAGAATCCATGTTTGTCTCAATTGAGGTACG
1 AGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACG
* * * *
3478570 AATTTAGATTTTATAAAATTTGGTGGGAATAAAGCCTTTGTTGAGAAGCCAAAGCATCAATATCG
66 AATTTAGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATCG
* * * * *
3478635 TCTATCCTAATGAGAAAACTTTGTTTATGGTGCCTAATCCTGAAGAGAATGAAGATTTGTATGAC
131 TCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATGAC
3478700 TATTCATGTCTATCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
196 TATTCA-GTCTATCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
3478765 TTTCTTGTGACT-CCAAATCATCAATGTCAAGTATCCTAATGGAGGGAATGTGTTTTTGGTTCCC
260 TTTCTTGT-AATACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCA
* * * *
3478829 ATTCTTGAAAAGAATGGTA-ACTGTTACGTGAATTGATGCTAGTCTTATTTATAAGAT-AACTTT
324 AATCTTGAAAAGAATGG-AGACTGTTATGAGAATTGATGCTAGTCTTATTTATGAGATGAACTTT
** *
3478892 GATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATCATCAGTATCGTTTAT
388 GATTTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATG-AAAAAAAAATCATCAGTATCGTTTAT
* * ** * ** * *
3478957 CATAATTAGGAGAAAGTGTTTACAGTGTCTAATCACAAAATGAATGAATGAAGTTCATCATAAGA
452 CCTAATAAGGAGAATTTGTTTATAGTGTCTAATCACAAAACAAAT-AATG-A--TCATTACAAGA
* * * * * * *
3479022 ATCCATATCGTCT--ATCATAATTAAGGCA-CGAATTTAGATTTTATAAAAATTGGTGGGAAGAA
513 AT-CA-AT-GTTTGCCTCAT-A-TGAGGCATC-AAGTTAGACTTTATAAAAATTAGTGAGAAGAA
** * *
3479084 AGCCTTTCTTGTTAAGCCAAAGTATCAATATCGTCTATCCTA-ATGA
572 A-CCTTTCTTGAGAAGCCAAAGCATCAATATCATCTATCCTATATGA
3479130 TGGGAATATC
Statistics
Matches: 1344, Mismatches: 195, Indels: 60
0.84 0.12 0.04
Matches are distributed among these distances:
945 5 0.00
946 10 0.01
947 514 0.38
948 138 0.10
949 219 0.16
950 4 0.00
951 186 0.14
952 38 0.03
953 144 0.11
954 8 0.01
955 3 0.00
956 17 0.01
957 19 0.01
958 39 0.03
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.32
Consensus pattern (948 bp):
AGTGTCTAATCACAAAATGAATGAAGTTCATTACTAGAATCCATGTTTGTCTCATTTGAGGTACG
AATTTAGATTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGAGAAGCTAAAGCATCAATATCG
TCTATCCTAATGAGAAGACTTTGTTTATGGTGCCTAATCTTGAAAAGAATGAGGATTAGTATGAC
TATTCAGTCTATCTCCTTTGAGGGATGAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
TTCTTGTAATACCAAATCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCAAA
TCTTGAAAAGAATGGAGACTGTTATGAGAATTGATGCTAGTCTTATTTATGAGATGAACTTTGAT
TTTAAGGAAAATAGGGCAAGGAAAAGATTTTGATGAAAAAAAAATCATCAGTATCGTTTATCCTA
ATAAGGAGAATTTGTTTATAGTGTCTAATCACAAAACAAATAATGATCATTACAAGAATCAATGT
TTGCCTCATATGAGGCATCAAGTTAGACTTTATAAAAATTAGTGAGAAGAAACCTTTCTTGAGAA
GCCAAAGCATCAATATCATCTATCCTATATGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGA
ATGAGGATTAGTATGACTATTCATGCATGTCTCCTTCGAGGGATGAACTTTGATTATATAAAAAA
CGGTGGAAAGAAAAGCTTTTCTTGCGACTCCAAATCATCAATGTCATGTATCCTAATTGAGGAAA
CGTGTTTTTGGTTCGAAATCTAGAAAAGAATGCAAACTATTACGAGAATCGATCCTAGCCTTATT
TACGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAGGAAAAGATTTCCATGCAAAAGAAAATC
ATCAGTATCATTTATCCTAAAGAGGAGAAGGTGTTTAT
Done.