Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold448
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1056520
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 5 of 7
Found at i:681965 original size:20 final size:20
Alignment explanation
Indices: 681940--681977 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
681930 TTAACAATTA
681940 TTTTTAT-ATTAATATTTATT
1 TTTTTATAATTAA-ATTTATT
681960 TTTTTATAATTAAATTTA
1 TTTTTATAATTAAATTTA
681978 AAAAATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTTATAATTAAATTTATT
Found at i:682942 original size:23 final size:22
Alignment explanation
Indices: 682898--682975 Score: 63
Period size: 23 Copynumber: 3.6 Consensus size: 22
682888 GTTAAAATTT
* *
682898 TAAATAATTTAAATTTATTCAA
1 TAAATAATTTAAATTGAATCAA
*
682920 TAAATAAATTTTAATTGAATCAA
1 TAAAT-AATTTAAATTGAATCAA
* * *
682943 TTAA-AATTT-AATTTAATTAA
1 TAAATAATTTAAATTGAATCAA
682963 TTAAA-AATTTAAA
1 -TAAATAATTTAAA
682976 AAAAAATTAT
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
20 9 0.20
21 13 0.28
22 7 0.15
23 17 0.37
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.44
Consensus pattern (22 bp):
TAAATAATTTAAATTGAATCAA
Found at i:682952 original size:20 final size:19
Alignment explanation
Indices: 682900--682974 Score: 71
Period size: 20 Copynumber: 3.8 Consensus size: 19
682890 TAAAATTTTA
*
682900 AATAATTTAAATTT-ATTC
1 AATAATTAAAATTTAATTC
* * *
682918 AATAAATAAATTTTAATTG
1 AATAATTAAAATTTAATTC
*
682937 AATCAATTAAAATTTAATTT
1 AAT-AATTAAAATTTAATTC
682957 AATTAATTAAAAATTTAA
1 AA-TAATT-AAAATTTAA
682975 AAAAAAATTA
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
18 11 0.24
19 6 0.13
20 19 0.41
21 10 0.22
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (19 bp):
AATAATTAAAATTTAATTC
Found at i:683065 original size:35 final size:32
Alignment explanation
Indices: 683002--683066 Score: 85
Period size: 35 Copynumber: 1.9 Consensus size: 32
682992 ATTTTTAAAA
* *
683002 ATATTTTTTATAATTAATAAAATTTAAATCTT
1 ATATTTTTTAAAATTAATAAAAATTAAATCTT
683034 ATATCTTTTTAAAATTATATTAAAAATTAAATC
1 ATAT-TTTTTAAAATTA-A-TAAAAATTAAATC
683067 ACTAAACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
32 4 0.14
33 11 0.39
34 1 0.04
35 12 0.43
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (32 bp):
ATATTTTTTAAAATTAATAAAAATTAAATCTT
Found at i:683330 original size:7 final size:7
Alignment explanation
Indices: 683318--683353 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
683308 ATTAAATGAC
683318 TATATTA
1 TATATTA
683325 TATATTA
1 TATATTA
683332 TATATTA
1 TATATTA
683339 TATATTA
1 TATATTA
683346 TATATTA
1 TATATTA
683353 T
1 T
683354 GCAATGGTAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TATATTA
Found at i:684197 original size:2 final size:2
Alignment explanation
Indices: 684190--684222 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
684180 CTTTTTATCA
684190 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
684223 ACAGATGAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:684365 original size:2 final size:2
Alignment explanation
Indices: 684360--684405 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
684350 CAAAAGAGAA
684360 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
684402 AT AT
1 AT AT
684406 GTATTCGAAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:685046 original size:2 final size:2
Alignment explanation
Indices: 685002--685033 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
684992 TTCAACCGTG
685002 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
685034 GAAAAAAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:688960 original size:15 final size:16
Alignment explanation
Indices: 688932--688971 Score: 64
Period size: 16 Copynumber: 2.5 Consensus size: 16
688922 AAAGAGATCA
688932 AAAAAGAAAGAAAAAG
1 AAAAAGAAAGAAAAAG
688948 AAAAAGAAA-AAAAAG
1 AAAAAGAAAGAAAAAG
688963 AAAAGAGAA
1 AAAA-AGAA
688972 TGATAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.82, C:0.00, G:0.17, T:0.00
Consensus pattern (16 bp):
AAAAAGAAAGAAAAAG
Found at i:690817 original size:26 final size:27
Alignment explanation
Indices: 690788--690839 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
690778 TTTTGAAAAT
690788 AAAAT-CGGGGTTGGAGTATCCCCGCG
1 AAAATACGGGGTTGGAGTATCCCCGCG
690814 AAAATAACGGGGTTGGAGTATCCCCG
1 AAAAT-ACGGGGTTGGAGTATCCCCG
690840 ATTATGAGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 5 0.21
28 19 0.79
ACGTcount: A:0.27, C:0.21, G:0.33, T:0.19
Consensus pattern (27 bp):
AAAATACGGGGTTGGAGTATCCCCGCG
Found at i:690827 original size:79 final size:80
Alignment explanation
Indices: 690670--690850 Score: 251
Period size: 79 Copynumber: 2.3 Consensus size: 80
690660 AATTGGGCTA
* * *
690670 GAGTATCCCTGATTAT-GAAAAATCGGTGTTCTAGAAATAAAAATTGGGGTTGGAGTATCCCCTC
1 GAGTATCCCTGATTATAG-AAAATCGGTATTCTAGAAATAAAAATCGGGGTTGGAGTATCCCCGC
*
690734 GAAAATAATAGGGTTG
65 GAAAATAACAGGGTTG
*
690750 GAGTATCCCTGATTATAGAAAATCGGTATT-TTGAAA-ATAAAATCGGGGTTGGAGTATCCCCGC
1 GAGTATCCCTGATTATAGAAAATCGGTATTCTAGAAATA-AAAATCGGGGTTGGAGTATCCCCGC
*
690813 GAAAATAACGGGGTTG
65 GAAAATAACAGGGTTG
*
690829 GAGTATCCCCGATTATGAGAAA
1 GAGTATCCCTGATTAT-AGAAA
690851 TTGAGAAACT
Statistics
Matches: 91, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.35
81 1 0.01
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (80 bp):
GAGTATCCCTGATTATAGAAAATCGGTATTCTAGAAATAAAAATCGGGGTTGGAGTATCCCCGCG
AAAATAACAGGGTTG
Found at i:693232 original size:13 final size:13
Alignment explanation
Indices: 693214--693239 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
693204 ACAAAGATCG
693214 ATGTATCGATACA
1 ATGTATCGATACA
693227 ATGTATCGATACA
1 ATGTATCGATACA
693240 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:693250 original size:21 final size:21
Alignment explanation
Indices: 693226--693267 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
693216 GTATCGATAC
693226 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
*
693247 AATGTATTGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
693268 GGCAATAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.17, G:0.10, T:0.45
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:693327 original size:32 final size:32
Alignment explanation
Indices: 693279--693356 Score: 120
Period size: 32 Copynumber: 2.4 Consensus size: 32
693269 GCAATAGCTT
*
693279 TGTAGCGATACATTGTATCGATACAAAACTTA
1 TGTATCGATACATTGTATCGATACAAAACTTA
* * *
693311 TGTATCGATACGTTGTATCGATACAACACTTT
1 TGTATCGATACATTGTATCGATACAAAACTTA
693343 TGTATCGATACATT
1 TGTATCGATACATT
693357 TATGGTTTGT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.32, C:0.17, G:0.15, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAAAACTTA
Found at i:693482 original size:10 final size:10
Alignment explanation
Indices: 693449--693494 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
693439 GACAAAAATG
693449 TATTTTT-TT
1 TATTTTTATT
* *
693458 AATTTTAATTT
1 TATTTTTA-TT
693469 TATTTTTATT
1 TATTTTTATT
693479 TATTTTTATT
1 TATTTTTATT
693489 T-TTTTT
1 TATTTTT
693495 TCTGTTTGCC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
9 10 0.32
10 13 0.42
11 8 0.26
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (10 bp):
TATTTTTATT
Found at i:693485 original size:16 final size:16
Alignment explanation
Indices: 693461--693491 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
693451 TTTTTTTAAT
693461 TTTAATTTTATTTTTA
1 TTTAATTTTATTTTTA
*
693477 TTTATTTTTATTTTT
1 TTTAATTTTATTTTT
693492 TTTTCTGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTAATTTTATTTTTA
Found at i:695030 original size:55 final size:55
Alignment explanation
Indices: 694941--695112 Score: 220
Period size: 55 Copynumber: 3.0 Consensus size: 55
694931 GAAAGGAGAG
* *
694941 AGCGTCCTGCTCTTTGAGGACTAGG-AAGTACCACCAACTTGTGTGGGCTTTAAAA
1 AGCGTCCTGCTCTTTGAGGACT-GGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
694996 AGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGAAA
1 AGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTT---A--AAA
* * *
695056 AGGCATCCCGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA
1 A-GCGTCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTAAAA
695113 GGAAAAGGCA
Statistics
Matches: 104, Mismatches: 5, Indels: 14
0.85 0.04 0.11
Matches are distributed among these distances:
54 2 0.02
55 46 0.44
57 3 0.03
58 1 0.01
59 1 0.01
60 4 0.04
61 24 0.23
62 23 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (55 bp):
AGCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAA
Found at i:695104 original size:62 final size:61
Alignment explanation
Indices: 694945--695148 Score: 280
Period size: 62 Copynumber: 3.4 Consensus size: 61
694935 GGAGAGAGCG
* * *
694945 TCCTGCTCTTTGAGGACTAG-GAAGTACCACCAACTTGTGTGGGCTTT--A--AAAA-GCG
1 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCA
*
695000 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCA
*
695061 TCCCGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAGGAAAAGGCA
*
695123 TCCTGCTCCTTGAGGACT-GAAAAGTG
1 TCCTGCTCTTTGAGGACTAGAAAAGTG
695149 GAAGGAGAAG
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
55 41 0.31
56 2 0.02
58 1 0.01
60 4 0.03
61 32 0.24
62 52 0.39
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.25
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAGGAAAAGGCA
Found at i:696105 original size:1 final size:1
Alignment explanation
Indices: 696099--696199 Score: 112
Period size: 1 Copynumber: 101.0 Consensus size: 1
696089 AAGCAGATTC
* * * * * *
696099 TTTTTTTTTTCTTTTTTTGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTTGTTTTTTTTTGTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * *
696164 TTTTTTTGTTTTTTTTGTTGTTTTTTGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
696200 GAAAAAAGAA
Statistics
Matches: 80, Mismatches: 20, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 80 1.00
ACGTcount: A:0.00, C:0.01, G:0.09, T:0.90
Consensus pattern (1 bp):
T
Found at i:696112 original size:11 final size:11
Alignment explanation
Indices: 696099--696199 Score: 154
Period size: 11 Copynumber: 9.3 Consensus size: 11
696089 AAGCAGATTC
696099 TTTTTTTT-TT
1 TTTTTTTTGTT
*
696109 CTTTTTTTGTT
1 TTTTTTTTGTT
696120 TTTTTTTTGTT
1 TTTTTTTTGTT
696131 TTTTTTTTGTT
1 TTTTTTTTGTT
696142 TTTTTTTTG-T
1 TTTTTTTTGTT
696152 TTTTTTTTGTT
1 TTTTTTTTGTT
696163 TTTTTTTTGTT
1 TTTTTTTTGTT
696174 TTTTTTGTTGTT
1 TTTTTT-TTGTT
696186 TTTTGTTTT-TT
1 TTTT-TTTTGTT
696197 TTT
1 TTT
696200 GAAAAAAGAA
Statistics
Matches: 85, Mismatches: 2, Indels: 7
0.90 0.02 0.07
Matches are distributed among these distances:
10 17 0.20
11 55 0.65
12 11 0.13
13 2 0.02
ACGTcount: A:0.00, C:0.01, G:0.09, T:0.90
Consensus pattern (11 bp):
TTTTTTTTGTT
Found at i:696115 original size:10 final size:10
Alignment explanation
Indices: 696099--696200 Score: 136
Period size: 10 Copynumber: 10.0 Consensus size: 10
696089 AAGCAGATTC
696099 TTTTTTTTT-
1 TTTTTTTTTG
*
696108 TCTTTTTTTG
1 TTTTTTTTTG
696118 TTTTTTTTTTG
1 -TTTTTTTTTG
696129 TTTTTTTTTTG
1 -TTTTTTTTTG
696140 TTTTTTTTTTG
1 -TTTTTTTTTG
696151 TTTTTTTTTG
1 TTTTTTTTTG
696161 TTTTTTTTT-
1 TTTTTTTTTG
696170 TGTTTTTTTTG
1 T-TTTTTTTTG
*
696181 TTGTTTTTTG
1 TTTTTTTTTG
696191 TTTTTTTTTG
1 TTTTTTTTTG
696201 AAAAAAGAAT
Statistics
Matches: 85, Mismatches: 4, Indels: 7
0.89 0.04 0.07
Matches are distributed among these distances:
9 9 0.11
10 44 0.52
11 32 0.38
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTG
Found at i:696123 original size:21 final size:20
Alignment explanation
Indices: 696099--696200 Score: 141
Period size: 21 Copynumber: 5.0 Consensus size: 20
696089 AAGCAGATTC
*
696099 TTTTTTTTTTCTTTTTTTGTT
1 TTTTTTTTTTTTTTTTTTG-T
696120 TTTTTTTTGTTTTTTTTTTGT
1 TTTTTTTT-TTTTTTTTTTGT
696141 TTTTTTTTTGTTTTTTTTTGT
1 TTTTTTTTT-TTTTTTTTTGT
*
696162 TTTTTTTTTGTTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTGT
* *
696182 TGTTTTTTGTTTTTTTTTG
1 TTTTTTTTTTTTTTTTTTG
696201 AAAAAAGAAT
Statistics
Matches: 74, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
20 27 0.36
21 37 0.50
22 10 0.14
ACGTcount: A:0.00, C:0.01, G:0.10, T:0.89
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTTTTGT
Found at i:702587 original size:13 final size:13
Alignment explanation
Indices: 702569--702593 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
702559 CATAAAGTGT
702569 TGTATCGATACAA
1 TGTATCGATACAA
702582 TGTATCGATACA
1 TGTATCGATACA
702594 TATTTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:702675 original size:13 final size:13
Alignment explanation
Indices: 702657--702681 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
702647 ATTACTCAAA
702657 TGTATCGATACAT
1 TGTATCGATACAT
702670 TGTATCGATACA
1 TGTATCGATACA
702682 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:702746 original size:52 final size:52
Alignment explanation
Indices: 702690--702818 Score: 213
Period size: 52 Copynumber: 2.5 Consensus size: 52
702680 CACTGATCTT
*
702690 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATAAAA
* * *
702742 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTACA
1 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATAAAA
*
702794 TGTATCGATACATGCAGGTAAATTT
1 TGTATCGATACATGCAGGAAAATTT
702819 TCATATTTCA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 72 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:712379 original size:79 final size:80
Alignment explanation
Indices: 712223--712403 Score: 233
Period size: 79 Copynumber: 2.3 Consensus size: 80
712213 AACTGGGCTA
* * * *
712223 GAGTATCCCCGATTAT-GAAAAATCGATGTTCTAGAAATAAAAATTGGGGTTGGAGTATCCTCTC
1 GAGTATCCCCGATTATAG-AAAATCGATATTCTAGAAATAAAAATCGGGGTTGGAGTATCCCCGC
* *
712287 GAAAATAATAGGGTTG
65 AAAAATAACAGGGTTG
* * *
712303 GAGTATCTCTGATTATAGAAAATCGATATT-TTGAAA-ATAAAATCGGGGTTGGAGTATCCCCGC
1 GAGTATCCCCGATTATAGAAAATCGATATTCTAGAAATA-AAAATCGGGGTTGGAGTATCCCCGC
712366 AAAAATAACAGGGTTG
65 AAAAATAACAGGGTTG
712382 GAGTATCCCCGATTATGAGAAA
1 GAGTATCCCCGATTAT-AGAAA
712404 TTGAGAAACT
Statistics
Matches: 87, Mismatches: 11, Indels: 6
0.84 0.11 0.06
Matches are distributed among these distances:
78 1 0.01
79 55 0.63
80 30 0.34
81 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (80 bp):
GAGTATCCCCGATTATAGAAAATCGATATTCTAGAAATAAAAATCGGGGTTGGAGTATCCCCGCA
AAAATAACAGGGTTG
Found at i:714800 original size:21 final size:21
Alignment explanation
Indices: 714774--714815 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
714764 GTATCGATAC
714774 AATGTATCAATACATTTCCTT
1 AATGTATCAATACATTTCCTT
*
714795 AATGTATCGATACATTTCCTT
1 AATGTATCAATACATTTCCTT
714816 GGTAGTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
AATGTATCAATACATTTCCTT
Found at i:714875 original size:32 final size:32
Alignment explanation
Indices: 714832--714904 Score: 119
Period size: 32 Copynumber: 2.3 Consensus size: 32
714822 AGCTTCGTAG
*
714832 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
* *
714864 CGATACGTTGTATCAATACAACACTTATGTAT
1 CGATACATTGTATCAATACAAAACTTATGTAT
714896 CGATACATT
1 CGATACATT
714905 TACGGTTTGT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCAATACAAAACTTATGTAT
Found at i:715050 original size:15 final size:15
Alignment explanation
Indices: 715011--715070 Score: 84
Period size: 15 Copynumber: 3.9 Consensus size: 15
715001 TAAAAATGTA
*
715011 TTTTTTTATTTTATTT
1 TTTTTTTATTTT-TAT
715027 TTATTTTTATTTTTAT
1 TT-TTTTTATTTTTAT
715043 TTTTTTTATTTTTAT
1 TTTTTTTATTTTTAT
*
715058 TTTTTTTCTTTTT
1 TTTTTTTATTTTT
715071 GCCTTCCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
15 25 0.61
16 6 0.15
17 10 0.24
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.87
Consensus pattern (15 bp):
TTTTTTTATTTTTAT
Found at i:715050 original size:21 final size:22
Alignment explanation
Indices: 715013--715070 Score: 84
Period size: 21 Copynumber: 2.7 Consensus size: 22
715003 AAAATGTATT
715013 TTTTTATTTTATTTTTATTTTTA
1 TTTTTA-TTTATTTTTATTTTTA
715036 TTTTTATTT-TTTTTATTTTTA
1 TTTTTATTTATTTTTATTTTTA
*
715057 TTTTT-TTTCTTTTT
1 TTTTTATTTATTTTT
715071 GCCTTCCAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 3 0.09
21 22 0.65
22 3 0.09
23 6 0.18
ACGTcount: A:0.12, C:0.02, G:0.00, T:0.86
Consensus pattern (22 bp):
TTTTTATTTATTTTTATTTTTA
Found at i:715070 original size:6 final size:6
Alignment explanation
Indices: 715013--715061 Score: 70
Period size: 6 Copynumber: 8.8 Consensus size: 6
715003 AAAATGTATT
715013 TTTTTA -TTTTA TTTTTA TTTTTA TTTTTA --TTT- TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
715057 TTTTT
1 TTTTT
715062 TTTCTTTTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
4 3 0.08
5 8 0.21
6 28 0.72
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:719347 original size:19 final size:19
Alignment explanation
Indices: 719323--719359 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
719313 CTGCCAGTTT
719323 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
719342 CATGTATTGATACAATGA
1 CATGTATCGATACAATGA
719360 TTCGATACAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:720425 original size:26 final size:26
Alignment explanation
Indices: 720395--720448 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
720385 CTAATTTGGT
720395 AATTGTATCAATACTTTGGTTGAAAA
1 AATTGTATCAATACTTTGGTTGAAAA
*
720421 AATTGTATCGATACTTTGGTTGAAAA
1 AATTGTATCAATACTTTGGTTGAAAA
720447 AA
1 AA
720449 ATATAATAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (26 bp):
AATTGTATCAATACTTTGGTTGAAAA
Found at i:721019 original size:26 final size:26
Alignment explanation
Indices: 720980--721066 Score: 77
Period size: 26 Copynumber: 3.3 Consensus size: 26
720970 CATTATTCCT
* * *
720980 TTTTCATTAAAATTCTTTCATGTATA
1 TTTTAATTAGAATTCTTTCATGTAAA
**
721006 TTTTAATTAGAATTCTGACATGTAAA
1 TTTTAATTAGAATTCTTTCATGTAAA
* *
721032 TTCTTAATT-GAATTTCTTTCTTCTAAGA
1 TT-TTAATTAGAA-TTCTTTCATGTAA-A
721060 TTTTAAT
1 TTTTAAT
721067 CAAGTCTTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
26 26 0.53
27 20 0.41
28 3 0.06
ACGTcount: A:0.31, C:0.10, G:0.07, T:0.52
Consensus pattern (26 bp):
TTTTAATTAGAATTCTTTCATGTAAA
Found at i:722833 original size:20 final size:20
Alignment explanation
Indices: 722804--722841 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
722794 CAGACATTTT
722804 GGTCTCTTTGACCAAATCTA
1 GGTCTCTTTGACCAAATCTA
*
722824 GGTCTTTTTGACCAAATC
1 GGTCTCTTTGACCAAATC
722842 CAAATCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.16, T:0.37
Consensus pattern (20 bp):
GGTCTCTTTGACCAAATCTA
Found at i:722849 original size:20 final size:20
Alignment explanation
Indices: 722810--722853 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
722800 TTTTGGTCTC
* **
722810 TTTGACCAAATCTAGGTCTT
1 TTTGACCAAATCCAAATCTT
722830 TTTGACCAAATCCAAATCTT
1 TTTGACCAAATCCAAATCTT
722850 TTTG
1 TTTG
722854 GTCTAGTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.41
Consensus pattern (20 bp):
TTTGACCAAATCCAAATCTT
Found at i:723503 original size:19 final size:19
Alignment explanation
Indices: 723460--723532 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
723450 CACACCGAGA
** *
723460 TGTATCGATACATTATGCTT
1 TGTATCGATACATGCT-CAT
723480 TGTATCGATACATGCTCAT
1 TGTATCGATACATGCTCAT
*
723499 TGTATCGATACATACTCAAT
1 TGTATCGATACATGCTC-AT
*
723519 TGTATTGATACATG
1 TGTATCGATACATG
723533 AAACTAGCAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
19 18 0.39
20 28 0.61
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGCTCAT
Found at i:723602 original size:20 final size:20
Alignment explanation
Indices: 723561--723610 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
723551 CTAAGTGAAA
*
723561 TGTATCGATACATGAGACAT
1 TGTATCGATACATAAGACAT
723581 TGTATCGATACATAAAGA-AT
1 TGTATCGATACAT-AAGACAT
*
723601 TGTATTGATA
1 TGTATCGATA
723611 TATTATGCCC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 24 0.89
21 3 0.11
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (20 bp):
TGTATCGATACATAAGACAT
Found at i:727510 original size:28 final size:29
Alignment explanation
Indices: 727437--727510 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
727427 ATAAAGCCAG
* *
727437 GGTTAGAGTATCCCC--TCGGAAGTAACGG
1 GGTTGGAGTATCCCCGAT-GGAAGTAACGA
727465 GGTTGGAGTATCCCCGATGGAA-TAACGA
1 GGTTGGAGTATCCCCGATGGAAGTAACGA
*
727493 GGTTGGAGTATCCTCGAT
1 GGTTGGAGTATCCCCGAT
727511 TGTGAAAAAT
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
28 36 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.24
Consensus pattern (29 bp):
GGTTGGAGTATCCCCGATGGAAGTAACGA
Found at i:727556 original size:51 final size:51
Alignment explanation
Indices: 727494--727609 Score: 135
Period size: 51 Copynumber: 2.3 Consensus size: 51
727484 GAATAACGAG
* * *
727494 GTTGGAGTATCCTCGATTGT-GAAAAATTAGTGTTTTGGAAATAAAATCGGA
1 GTTGGAATATCCCCGATTGTAG-AAAATTAGTGTTTTAGAAATAAAATCGGA
* * * *
727545 GTTGGAATATCCCCGATTGTAGAGAATTGGTGTTTTAGAAATAAAACCGGG
1 GTTGGAATATCCCCGATTGTAGAAAATTAGTGTTTTAGAAATAAAATCGGA
* *
727596 GTTCGAGTATCCCC
1 GTTGGAATATCCCC
727610 TCGAAAATAA
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 54 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (51 bp):
GTTGGAATATCCCCGATTGTAGAAAATTAGTGTTTTAGAAATAAAATCGGA
Found at i:727628 original size:79 final size:80
Alignment explanation
Indices: 727545--727720 Score: 241
Period size: 80 Copynumber: 2.2 Consensus size: 80
727535 TAAAATCGGA
* * *
727545 GTTGGAATATCCCCGATTGT-AGAGAATTGGTGTTTTAGAAATAAAACC-GGGGTTCGAGTATCC
1 GTTGGAATATCCCCGATTATGA-AAAATTGATGTTTTAGAAATAAAACCGGGGGTTCGAGTATCC
*
727608 CCTCGAAAATAACGGG
65 CCTCGAAAATAACGAG
* *
727624 GTTGGAGA-ATCCCAGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGGTTGGAGTATCC
1 GTTGGA-ATATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGGTTCGAGTATCC
*
727688 CCTCGAAAATAGCGAG
65 CCTCGAAAATAACGAG
*
727704 GTTGGACTATCCCCGAT
1 GTTGGAATATCCCCGAT
727721 GATTAACGGG
Statistics
Matches: 84, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
79 40 0.48
80 44 0.52
ACGTcount: A:0.31, C:0.16, G:0.26, T:0.26
Consensus pattern (80 bp):
GTTGGAATATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGGTTCGAGTATCCC
CTCGAAAATAACGAG
Found at i:727645 original size:237 final size:237
Alignment explanation
Indices: 727220--727848 Score: 668
Period size: 237 Copynumber: 2.6 Consensus size: 237
727210 TTTTGGAGAT
* * * *
727220 AATAACGGGGTTGGAGTATCCCTTCGA-AAATAACGGGGTTGGAGAATCCCCGATTGTG-AAAAG
1 AATAACGGGGTTGGAGTATCCC--CGATGAATAACGGGGTTGGAGTATCCTCGATTGTGAAAAAT
* * * * * * * *
727283 TCGATGATTTAGAAATAAGACA-AGG-GTT-GAAGTGTCCCCGATTATAGAAAATAGATGTTTCA
64 TAG-TGTTTTGGAAATAA-A-ATCGGAGTTGGAA-TATCCCCGATTATAGAAAATTGGTGTTTTA
* * * * * * *
727345 AAAATAAAGTCGGGATTGGAGTATCCCCATAAAAATAATAGGGTTGGAGTATCCCCAATTATGAG
125 GAAATAAAATCGGGGTTAGAGTATCCCCATAAAAATAACAGGGTTGGAGAATCCCCAATTATGAA
* *
727410 AAATCAATATTTT-GAAAATAAAGCC-AGGGTTAGAGTATCCCCTCGGA
190 AAATCAATATTTTAG-AAATAAAACCGAGGGTTAGAGTATCCCCTCGAA
* *
727457 AGTAACGGGGTTGGAGTATCCCCGATGGAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATT
1 AATAACGGGGTTGGAGTATCCCCGAT-GAATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATT
* *
727522 AGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTGTAGAGAATTGGTGTTTTAGAAAT
65 AGTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTATAGAAAATTGGTGTTTTAGAAAT
* * * *
727587 AAAACCGGGGTTCGAGTATCCCC-TCGAAAATAACGGGGTTGGAGAAT-CCCAGATTATGAAAAA
130 AAAATCGGGGTTAGAGTATCCCCAT-AAAAATAACAGGGTTGGAGAATCCCCA-ATTATGAAAAA
** * * *
727650 TTGATGTTTTAGAAATAAAACCGGGGGTTGGAGTATCCCCTCGAA
193 TCAATATTTTAGAAATAAAACCGAGGGTTAGAGTATCCCCTCGAA
* * * *
727695 AATAGCGAGGTTGGACTATCCCCGATGATTAACGGGGTTGGAGTAT-CTCCGATTGTGAAAAATT
1 AATAACGGGGTTGGAGTATCCCCGATGAATAACGGGGTTGGAGTATCCT-CGATTGTGAAAAATT
* * * *
727759 GGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCTCGATTAAAGGAAAATTGGTGTTTT-GAA
65 AGTG-TTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTATA-GAAAATTGGTGTTTTAG-A
*
727823 AATAAAATCGGGGTTAGAGTGTCCCC
127 AATAAAATCGGGGTTAGAGTATCCCC
727849 GATTGTGGAA
Statistics
Matches: 330, Mismatches: 48, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
235 4 0.01
236 10 0.03
237 190 0.58
238 88 0.27
239 38 0.12
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (237 bp):
AATAACGGGGTTGGAGTATCCCCGATGAATAACGGGGTTGGAGTATCCTCGATTGTGAAAAATTA
GTGTTTTGGAAATAAAATCGGAGTTGGAATATCCCCGATTATAGAAAATTGGTGTTTTAGAAATA
AAATCGGGGTTAGAGTATCCCCATAAAAATAACAGGGTTGGAGAATCCCCAATTATGAAAAATCA
ATATTTTAGAAATAAAACCGAGGGTTAGAGTATCCCCTCGAA
Found at i:727875 original size:51 final size:51
Alignment explanation
Indices: 727727--727965 Score: 309
Period size: 51 Copynumber: 4.6 Consensus size: 51
727717 CGATGATTAA
* * *
727727 CGGGGTTGGAGTATCTCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTG-TTTTGAAAATAAAAT
* * **
727779 CGGAGTTGGAGTATCCTCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATT-GTGGAAAATTGGTGTTTTGAAAATAAAAT
* * *
727831 CGGGGTTAGAGTGTCCCCGATTGTGGAAAATTGGTGTTTCGAAAATAAAAT
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAT
* * *
727882 CGGAGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGA-AAATAAAAT
* *
727933 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGGAAAATTG
727966 AGAAACTTAA
Statistics
Matches: 161, Mismatches: 24, Indels: 5
0.85 0.13 0.03
Matches are distributed among these distances:
50 1 0.01
51 98 0.61
52 51 0.32
53 11 0.07
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTGTGGAAAATTGGTGTTTTGAAAATAAAAT
Found at i:727939 original size:102 final size:104
Alignment explanation
Indices: 727727--727965 Score: 340
Period size: 102 Copynumber: 2.3 Consensus size: 104
727717 CGATGATTAA
* * *
727727 CGGGGTTGGAGTATCTCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
* * *
727792 TCCTCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAAT
66 TCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
* * *
727831 CGGGGTTAGAGTGTCCCCGATTGTGGAAAATTGGTG-TTTCGAAAATAAAATCGGAGTTGGAGTA
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
**
727895 TCCCCGATT-GTGGAAAATTAGTGTTTT-AGAAATAAAAC
66 TCCCCGATTAAAGGAAAATTAGTGTTTTGA-AAATAAAAC
*
727933 CGGGGTTGGAGTATCCCCGATTATGAAAAATTG
1 CGGGGTTGGAGTATCCCCGATTGTGAAAAATTG
727966 AGAAACTTAA
Statistics
Matches: 119, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
101 1 0.01
102 52 0.44
103 34 0.29
104 32 0.27
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (104 bp):
CGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTCGAAAATAAAATCGGAGTTGGAGTA
TCCCCGATTAAAGGAAAATTAGTGTTTTGAAAATAAAAC
Found at i:730314 original size:20 final size:20
Alignment explanation
Indices: 730289--730327 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
730279 AAACTTCCTA
730289 GATGTATCAATACAAAGATT
1 GATGTATCAATACAAAGATT
*
730309 GATGTATCGATACAAAGAT
1 GATGTATCAATACAAAGAT
730328 CGATACATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.10, G:0.18, T:0.28
Consensus pattern (20 bp):
GATGTATCAATACAAAGATT
Found at i:730343 original size:19 final size:21
Alignment explanation
Indices: 730319--730357 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
730309 GATGTATCGA
730319 TACAAA-G-ATCGATACATTC
1 TACAAATGTATCGATACATTC
730338 TACAAATGTATCGATACATT
1 TACAAATGTATCGATACATT
730358 TCCTTGGCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 6 0.33
20 1 0.06
21 11 0.61
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (21 bp):
TACAAATGTATCGATACATTC
Found at i:730413 original size:19 final size:19
Alignment explanation
Indices: 730389--730436 Score: 96
Period size: 19 Copynumber: 2.5 Consensus size: 19
730379 CGATACACTA
730389 TATCGATACAACACTTATG
1 TATCGATACAACACTTATG
730408 TATCGATACAACACTTATG
1 TATCGATACAACACTTATG
730427 TATCGATACA
1 TATCGATACA
730437 TTTACTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.10, T:0.31
Consensus pattern (19 bp):
TATCGATACAACACTTATG
Found at i:730521 original size:21 final size:20
Alignment explanation
Indices: 730495--730533 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
730485 GTTGGGACCT
730495 TGTATCGATACATTCTGGAAA
1 TGTATCGATACATT-TGGAAA
730516 TGTATCGATACATTTGGA
1 TGTATCGATACATTTGGA
730534 CAAAAATGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (20 bp):
TGTATCGATACATTTGGAAA
Found at i:731479 original size:21 final size:19
Alignment explanation
Indices: 731453--731503 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
731443 CAATAATTTA
731453 TATCGATACAAACAGTAAATG
1 TATCGATACAAA-AGT-AATG
** *
731474 TATCGATACGTAAGTATTG
1 TATCGATACAAAAGTAATG
731493 TATCGATACAA
1 TATCGATACAA
731504 TGTATCGCTA
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
19 12 0.48
20 3 0.12
21 10 0.40
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (19 bp):
TATCGATACAAAAGTAATG
Found at i:731835 original size:18 final size:18
Alignment explanation
Indices: 731812--731855 Score: 88
Period size: 18 Copynumber: 2.4 Consensus size: 18
731802 CAAATTCATT
731812 GGCTGCCATGGATGCCAA
1 GGCTGCCATGGATGCCAA
731830 GGCTGCCATGGATGCCAA
1 GGCTGCCATGGATGCCAA
731848 GGCTGCCA
1 GGCTGCCA
731856 AACATTAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.34, T:0.16
Consensus pattern (18 bp):
GGCTGCCATGGATGCCAA
Found at i:731836 original size:9 final size:9
Alignment explanation
Indices: 731812--731856 Score: 54
Period size: 9 Copynumber: 5.0 Consensus size: 9
731802 CAAATTCATT
*
731812 GGCTGCCAT
1 GGCTGCCAA
*
731821 GGATGCCAA
1 GGCTGCCAA
*
731830 GGCTGCCAT
1 GGCTGCCAA
*
731839 GGATGCCAA
1 GGCTGCCAA
731848 GGCTGCCAA
1 GGCTGCCAA
731857 ACATTAATTC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.22, C:0.29, G:0.33, T:0.16
Consensus pattern (9 bp):
GGCTGCCAA
Found at i:742548 original size:13 final size:13
Alignment explanation
Indices: 742530--742581 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
742520 AGCTTCGTAG
742530 CGATACATTGTAT
1 CGATACATTGTAT
742543 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
742562 CGATACATTGTAT
1 CGATACATTGTAT
742575 CGATACA
1 CGATACA
742582 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:742562 original size:19 final size:18
Alignment explanation
Indices: 742538--742600 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
742528 AGCGATACAT
742538 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
742557 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
742570 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
742589 TGTATCGATACA
1 TGTATCGATACA
742601 GTTACGATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:742571 original size:32 final size:32
Alignment explanation
Indices: 742530--742600 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
742520 AGCTTCGTAG
742530 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
742562 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
742594 CGATACA
1 CGATACA
742601 GTTACGATTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:742685 original size:21 final size:20
Alignment explanation
Indices: 742659--742697 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
742649 GTTGGGACCT
*
742659 TGTATCGATACATTCTAGAAA
1 TGTATCGAGACATT-TAGAAA
742680 TGTATCGAGACATTTAGA
1 TGTATCGAGACATTTAGA
742698 TAAAAATGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (20 bp):
TGTATCGAGACATTTAGAAA
Found at i:742869 original size:11 final size:11
Alignment explanation
Indices: 742853--742893 Score: 55
Period size: 11 Copynumber: 3.5 Consensus size: 11
742843 TGTCGAAAAT
742853 TGGATGGGAAA
1 TGGATGGGAAA
742864 TGGATGGGAAA
1 TGGATGGGAAA
742875 TGGACGATGGGAAA
1 T-G--GATGGGAAA
742889 TGGAT
1 TGGAT
742894 TCATCCCCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
11 15 0.56
12 1 0.04
13 1 0.04
14 10 0.37
ACGTcount: A:0.34, C:0.02, G:0.44, T:0.20
Consensus pattern (11 bp):
TGGATGGGAAA
Found at i:742885 original size:14 final size:13
Alignment explanation
Indices: 742855--742892 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
742845 TCGAAAATTG
742855 GATGGGAAAT-G-
1 GATGGGAAATGGA
742866 GATGGGAAATGGA
1 GATGGGAAATGGA
742879 CGATGGGAAATGGA
1 -GATGGGAAATGGA
742893 TTCATCCCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 10 0.42
12 1 0.04
14 13 0.54
ACGTcount: A:0.37, C:0.03, G:0.45, T:0.16
Consensus pattern (13 bp):
GATGGGAAATGGA
Found at i:749128 original size:17 final size:16
Alignment explanation
Indices: 749108--749238 Score: 99
Period size: 17 Copynumber: 7.9 Consensus size: 16
749098 CGTCCTCCGC
749108 AAAAAAAAAC--AAGA
1 AAAAAAAAACAAAAGA
*
749122 AGAAAAAAAC--AAGA
1 AAAAAAAAACAAAAGA
*
749136 AGAAAAAAACAAGAAGA
1 AAAAAAAAACAA-AAGA
*
749153 AAAAAAAAACAAACAAA
1 AAAAAAAAACAAA-AGA
*
749170 CAAAAAAATAACAAAATA
1 -AAAAAAA-AACAAAAGA
*
749188 AACAAAAAAACTGAAAAAA
1 AA-AAAAAAAC--AAAAGA
*
749207 AAAACAAAAACAAAACA
1 AAAA-AAAAACAAAAGA
749224 AAAAAAACAACAAAA
1 AAAAAAA-AACAAAA
749239 AGGTCTGGAT
Statistics
Matches: 100, Mismatches: 6, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
14 23 0.23
16 4 0.04
17 38 0.38
18 16 0.16
19 19 0.19
ACGTcount: A:0.82, C:0.11, G:0.05, T:0.02
Consensus pattern (16 bp):
AAAAAAAAACAAAAGA
Found at i:749129 original size:14 final size:14
Alignment explanation
Indices: 749110--749158 Score: 98
Period size: 14 Copynumber: 3.5 Consensus size: 14
749100 TCCTCCGCAA
749110 AAAAAAACAAGAAG
1 AAAAAAACAAGAAG
749124 AAAAAAACAAGAAG
1 AAAAAAACAAGAAG
749138 AAAAAAACAAGAAG
1 AAAAAAACAAGAAG
749152 AAAAAAA
1 AAAAAAA
749159 AAACAAACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 35 1.00
ACGTcount: A:0.82, C:0.06, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAACAAGAAG
Found at i:749135 original size:11 final size:10
Alignment explanation
Indices: 749107--749239 Score: 78
Period size: 11 Copynumber: 12.8 Consensus size: 10
749097 GCGTCCTCCG
749107 CAAAAAAAAA
1 CAAAAAAAAA
*
749117 CAAGAAGAAAA
1 CAA-AAAAAAA
* *
749128 -AAACAAGAA
1 CAAAAAAAAA
*
749137 GAAAAAAACAA
1 CAAAAAAA-AA
*
749148 GAAGAAAAAAA
1 CAA-AAAAAAA
749159 -AAACAAACAAA
1 CAAA-AAA-AAA
749170 CAAAAAAATAA
1 CAAAAAAA-AA
*
749181 C-AAAATAAA
1 CAAAAAAAAA
*
749190 CAAAAAAACTGA
1 CAAAAAAA--AA
749202 -AAAAAAAAA
1 CAAAAAAAAA
749211 CAAAAACAAAA
1 CAAAAA-AAAA
749222 C-AAAAAAAA
1 CAAAAAAAAA
749231 CAACAAAAA
1 CAA-AAAAA
749240 GGTCTGGATG
Statistics
Matches: 98, Mismatches: 10, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
9 14 0.14
10 36 0.37
11 39 0.40
12 9 0.09
ACGTcount: A:0.81, C:0.11, G:0.05, T:0.02
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:749175 original size:20 final size:18
Alignment explanation
Indices: 749124--749239 Score: 88
Period size: 20 Copynumber: 5.8 Consensus size: 18
749114 AAACAAGAAG
749124 AAAAAAACAAGAAGAAAAAA
1 AAAAAAACAA-AA-AAAAAA
* * *
749144 ACAAGAAGAAAAAAAAAA
1 AAAAAAACAAAAAAAAAA
*
749162 CAAACAAACAAAAAAATAACA
1 -AAAAAAACAAAAAAA-AA-A
*
749183 AAATAAACAAAAAAACTGAAA
1 AAAAAAACAAAAAAA---AAA
749204 AAAAAAACAAAAACAAAACA
1 AAAAAAACAAAAA-AAAA-A
749224 AAAAAAACAACAAAAA
1 AAAAAAACAA-AAAAA
749240 GGTCTGGATG
Statistics
Matches: 78, Mismatches: 10, Indels: 16
0.75 0.10 0.15
Matches are distributed among these distances:
18 6 0.08
19 15 0.19
20 36 0.46
21 17 0.22
22 4 0.05
ACGTcount: A:0.82, C:0.11, G:0.04, T:0.03
Consensus pattern (18 bp):
AAAAAAACAAAAAAAAAA
Found at i:749197 original size:41 final size:39
Alignment explanation
Indices: 749154--749239 Score: 58
Period size: 36 Copynumber: 2.4 Consensus size: 39
749144 ACAAGAAGAA
* * * *
749154 AAAAAAAACAAACAAACAAAAAAATAAC-AAAA-TAAAC
1 AAAAAAAACAAAAAAAAAAAAAAAAAACAAAAACAAAAC
** *
749191 -AAAAAAACTGAAAAAAAAAACAAAAAC-AAAAC-AAA-
1 AAAAAAAACAAAAAAAAAAAAAAAAAACAAAAACAAAAC
*
749226 AAAAACAACAAAAA
1 AAAAAAAACAAAAA
749240 GGTCTGGATG
Statistics
Matches: 38, Mismatches: 9, Indels: 5
0.73 0.17 0.10
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.83, C:0.13, G:0.01, T:0.03
Consensus pattern (39 bp):
AAAAAAAACAAAAAAAAAAAAAAAAAACAAAAACAAAAC
Found at i:750719 original size:29 final size:30
Alignment explanation
Indices: 750672--750761 Score: 89
Period size: 29 Copynumber: 3.1 Consensus size: 30
750662 TTCCTCACCC
* * * *
750672 TTCAAAAGCTCATAGGTCAGTGGTATCTTT
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTT
* *
750702 TTC-AAAGCCCACAAGTCAGTGGCAAC--C
1 TTCAAAAGCCCACAAGTCAGTGGCATCTTT
750729 TTCAAAAGCCCACAAGTTC-GTGGCATCTTT
1 TTCAAAAGCCCACAAG-TCAGTGGCATCTTT
750759 TTC
1 TTC
750762 CTTTTAAGTC
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
27 3 0.06
28 19 0.40
29 20 0.42
30 6 0.12
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.29
Consensus pattern (30 bp):
TTCAAAAGCCCACAAGTCAGTGGCATCTTT
Found at i:750860 original size:49 final size:49
Alignment explanation
Indices: 750788--751098 Score: 246
Period size: 49 Copynumber: 6.4 Consensus size: 49
750778 TCCATGGCAC
* *
750788 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAT
*
750837 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA----C--
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAT
* * *
750880 CTTTAAGTCCAATGTC-ATCGGCCTTGAATCAGCACATTGGTATCTTCAT
1 CTTTAAGTCCAATATCGCT-GGCCTTGAATCAGCACATTGGCATCTTCAT
* * * * *
750929 CTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGGCATCTTTAA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAT
* * * ** *
750978 CATTCCTAAGCCCAATGTC-ATGGGCCTTGTCTCAGCACATTGGCA--TTCTT
1 C-TT--TAAGTCCAATATCGCT-GGCCTTGAATCAGCACATTGGCATCTTCAT
* * * * * *
751028 CTTCAAGTCTAATGTCGCTAGCCATGAATCAGCACATTGTCATTCTTCGCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCA-TCTT--CAT
** *
751080 CTTCGAGCCCAATATCGCT
1 CTTTAAGTCCAATATCGCT
751099 AGCCGCATAT
Statistics
Matches: 206, Mismatches: 38, Indels: 33
0.74 0.14 0.12
Matches are distributed among these distances:
42 1 0.00
43 36 0.17
45 1 0.00
47 29 0.14
48 1 0.00
49 82 0.40
50 8 0.04
51 1 0.00
52 47 0.23
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (49 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCACATTGGCATCTTCAT
Found at i:750903 original size:43 final size:42
Alignment explanation
Indices: 750834--750977 Score: 153
Period size: 43 Copynumber: 3.2 Consensus size: 42
750824 TTGGCATCTT
*
750834 CATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG
1 CATCTTTAAGTCCAATATCTC-GGCCTTGAATCAGCATATTGG
* * *
750877 CACCTTTAAGTCCAATGTCATCGGCCTTGAATCAGCACATTGG
1 CATCTTTAAGTCCAATATC-TCGGCCTTGAATCAGCATATTGG
* *
750920 TATCTTCATCTTTAAGTCCGATATCGTTGGCCTTGAATCAGCATATTGG
1 ------CATCTTTAAGTCCAATATC-TCGGCCTTGAATCAGCATATTGG
750969 CATCTTTAA
1 CATCTTTAA
750978 CATTCCTAAG
Statistics
Matches: 84, Mismatches: 10, Indels: 14
0.78 0.09 0.13
Matches are distributed among these distances:
43 46 0.55
44 1 0.01
49 37 0.44
ACGTcount: A:0.25, C:0.24, G:0.17, T:0.34
Consensus pattern (42 bp):
CATCTTTAAGTCCAATATCTCGGCCTTGAATCAGCATATTGG
Found at i:750944 original size:92 final size:92
Alignment explanation
Indices: 750782--750977 Score: 322
Period size: 92 Copynumber: 2.1 Consensus size: 92
750772 CACAACTCCA
750782 TGGCACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTCATCTTTAAGTCC
1 TGGCACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTCATCTTTAAGTCC
750847 AATATCGCTGGCCTTGAATCAGCATAT
66 AATATCGCTGGCCTTGAATCAGCATAT
* * *
750874 TGGCACCTTTAAGTCCAATGTC-ATCGGCCTTGAATCAGCACATTGGTATCTTCATCTTTAAGTC
1 TGGCACCTTTAAGTCCAATGTCGCT-GGCCTTGAATCAACACATTGGCATCTTCATCTTTAAGTC
* *
750938 CGATATCGTTGGCCTTGAATCAGCATAT
65 CAATATCGCTGGCCTTGAATCAGCATAT
*
750966 TGGCATCTTTAA
1 TGGCACCTTTAA
750978 CATTCCTAAG
Statistics
Matches: 97, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
91 1 0.01
92 96 0.99
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.33
Consensus pattern (92 bp):
TGGCACCTTTAAGTCCAATGTCGCTGGCCTTGAATCAACACATTGGCATCTTCATCTTTAAGTCC
AATATCGCTGGCCTTGAATCAGCATAT
Found at i:751731 original size:21 final size:20
Alignment explanation
Indices: 751701--751739 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
751691 CACATTTTTG
751701 TCTAAATGTATCGATACATT
1 TCTAAATGTATCGATACATT
751721 TCTAGAATGTATCGATACA
1 TCTA-AATGTATCGATACA
751740 AGGTCCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
TCTAAATGTATCGATACATT
Found at i:751898 original size:13 final size:13
Alignment explanation
Indices: 751880--751940 Score: 62
Period size: 13 Copynumber: 5.0 Consensus size: 13
751870 CATTATTCAA
751880 TGTATCGATACAT
1 TGTATCGATACAT
751893 TGTATCGATACAT
1 TGTATCGATACAT
751906 TG-ATC--T---T
1 TGTATCGATACAT
751913 TGTATCGATACATCT
1 TGTATCGATACA--T
751928 TGTATCGATACAT
1 TGTATCGATACAT
751941 CTGGGAATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 16
0.71 0.00 0.29
Matches are distributed among these distances:
7 3 0.08
8 3 0.08
10 2 0.05
12 3 0.08
13 16 0.40
15 13 0.32
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:751902 original size:33 final size:34
Alignment explanation
Indices: 751860--751940 Score: 112
Period size: 33 Copynumber: 2.4 Consensus size: 34
751850 GCCAAGGAAA
751860 TGTATCGATACATT-ATTCAATGTATCGATACA-T
1 TGTATCGATACATTGA-TCAATGTATCGATACACT
**
751893 TGTATCGATACATTGATCTTTGTATCGATACATCT
1 TGTATCGATACATTGATCAATGTATCGATACA-CT
751928 TGTATCGATACAT
1 TGTATCGATACAT
751941 CTGGGAATTT
Statistics
Matches: 43, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
33 28 0.65
34 1 0.02
35 14 0.33
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.41
Consensus pattern (34 bp):
TGTATCGATACATTGATCAATGTATCGATACACT
Found at i:751932 original size:15 final size:15
Alignment explanation
Indices: 751880--751942 Score: 67
Period size: 15 Copynumber: 4.0 Consensus size: 15
751870 CATTATTCAA
751880 TGTATCGATACA--T
1 TGTATCGATACATCT
751893 TGTATCGATACATTGATCTT
1 TGTATCGATAC----ATC-T
751913 TGTATCGATACATCT
1 TGTATCGATACATCT
751928 TGTATCGATACATCT
1 TGTATCGATACATCT
751943 GGGAATTTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 16 0.37
16 3 0.07
17 1 0.02
20 12 0.28
ACGTcount: A:0.27, C:0.17, G:0.14, T:0.41
Consensus pattern (15 bp):
TGTATCGATACATCT
Found at i:760801 original size:20 final size:20
Alignment explanation
Indices: 760776--760825 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
760766 AGTGAAATGT
*
760776 ATCGATACATG-GGACATTGC
1 ATCGATACATGAAGA-ATTGC
*
760796 ATCGATACATGAAGAATTGT
1 ATCGATACATGAAGAATTGC
760816 ATCGATACAT
1 ATCGATACAT
760826 TATGCCCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
20 25 0.93
21 2 0.07
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (20 bp):
ATCGATACATGAAGAATTGC
Found at i:762328 original size:43 final size:44
Alignment explanation
Indices: 762280--762364 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 44
762270 AACTTTCAAT
*
762280 TTTTTAAAATTAAAATATATATAGTTATTAAAC-AAATTTTTAC
1 TTTTTAAAATTAAAATATACATAGTTATTAAACAAAATTTTTAC
762323 TTTTTAAAATTAAAATATACATAGTTATTAAACAAAATTTTT
1 TTTTTAAAATTAAAATATACATAGTTATTAAACAAAATTTTT
762365 TAAAAGTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
43 32 0.80
44 8 0.20
ACGTcount: A:0.47, C:0.05, G:0.02, T:0.46
Consensus pattern (44 bp):
TTTTTAAAATTAAAATATACATAGTTATTAAACAAAATTTTTAC
Found at i:763151 original size:22 final size:23
Alignment explanation
Indices: 763110--763152 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
763100 TTTATATTTG
*
763110 TAATTGTTAAAAATTGAAAATCT
1 TAATTGTTAAAAATTAAAAATCT
763133 TAATTGTT-AAAATTAAAAAT
1 TAATTGTTAAAAATTAAAAAT
763153 TCATCTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (23 bp):
TAATTGTTAAAAATTAAAAATCT
Found at i:763536 original size:18 final size:18
Alignment explanation
Indices: 763495--763533 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
763485 TAAAATTAAT
*
763495 TAATTTTATATGTATTTA
1 TAATTTTATATGTATTGA
*
763513 TAATTTTGTATGTAATTGA
1 TAATTTTATATGT-ATTGA
763532 TA
1 TA
763534 TTTAAAATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.33, C:0.00, G:0.10, T:0.56
Consensus pattern (18 bp):
TAATTTTATATGTATTGA
Found at i:763575 original size:18 final size:17
Alignment explanation
Indices: 763525--763576 Score: 50
Period size: 21 Copynumber: 2.7 Consensus size: 17
763515 ATTTTGTATG
763525 TAATTGATATTTAAAATA
1 TAATT-ATATTTAAAATA
763543 TAAATTATTAAATTTAATAATA
1 T-AATTA-T--ATTTAA-AATA
763565 TAATTATATTTA
1 TAATTATATTTA
763577 TGGTGTATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
18 7 0.24
19 5 0.17
20 1 0.03
21 11 0.38
22 5 0.17
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
TAATTATATTTAAAATA
Found at i:763667 original size:22 final size:23
Alignment explanation
Indices: 763626--763668 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
763616 TATCAATAAA
763626 AATTTTATAATTTTTATATATTT
1 AATTTTATAATTTTTATATATTT
763649 AATTATTA-AATTTTT-TATAT
1 AATT-TTATAATTTTTATATAT
763669 CAACAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 11 0.58
24 3 0.16
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (23 bp):
AATTTTATAATTTTTATATATTT
Found at i:763737 original size:34 final size:34
Alignment explanation
Indices: 763673--763747 Score: 82
Period size: 35 Copynumber: 2.2 Consensus size: 34
763663 TTATATCAAC
* **
763673 AAAAT-AATTATATATTTTTAATTATAAAAAAATA
1 AAAATAAATTATATATTTTAAAAAAT-AAAAAATA
*
763707 AAAATAAATTATCTATTTTAAAAAAT-AAAAATA
1 AAAATAAATTATATATTTTAAAAAATAAAAAATA
763740 AAATATAA
1 AAA-ATAA
763748 TAATTAAATT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
33 10 0.29
34 9 0.26
35 16 0.46
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (34 bp):
AAAATAAATTATATATTTTAAAAAATAAAAAATA
Found at i:763754 original size:27 final size:27
Alignment explanation
Indices: 763699--763755 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
763689 TTTAATTATA
* * *
763699 AAAAAATAAAAATAAATTATCTATTTT
1 AAAAAATAAAAATAAAATATATATATT
763726 AAAAAATAAAAATAAAATATA-ATAATT
1 AAAAAATAAAAATAAAATATATAT-ATT
763753 AAA
1 AAA
763756 TTAAACAAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAAAATAAAAATAAAATATATATATT
Found at i:764238 original size:40 final size:40
Alignment explanation
Indices: 764194--764270 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 40
764184 ATTTTTTATT
* *
764194 TTTATCAT-ATCTAAAAA-TATATATTATTATATTAATACTA
1 TTTAT-ATAATCTAAAAATTATATAATATAAT-TTAATACTA
*
764234 TTTATATAATTTAAAAATTATATAATATAATTTAATA
1 TTTATATAATCTAAAAATTATATAATATAATTTAATA
764271 TTAAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 2 0.06
40 19 0.59
41 11 0.34
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (40 bp):
TTTATATAATCTAAAAATTATATAATATAATTTAATACTA
Found at i:764284 original size:27 final size:25
Alignment explanation
Indices: 764237--764297 Score: 70
Period size: 27 Copynumber: 2.4 Consensus size: 25
764227 AATACTATTT
764237 ATATAAT-TTAAAAATTATATAATATA
1 ATATAATATTAAAAATTATATAA-A-A
* * *
764263 ATTTAATATTAAAATTTTTATAAAA
1 ATATAATATTAAAAATTATATAAAA
764288 ATATAATATT
1 ATATAATATT
764298 TTAAATAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
25 10 0.33
26 7 0.23
27 13 0.43
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
ATATAATATTAAAAATTATATAAAA
Found at i:766747 original size:15 final size:14
Alignment explanation
Indices: 766711--766760 Score: 57
Period size: 15 Copynumber: 3.5 Consensus size: 14
766701 TCAAAACATA
766711 AAAT-AATTAAAAT
1 AAATAAATTAAAAT
*
766724 AATTAAAATTAAAAT
1 AAAT-AAATTAAAAT
*
766739 AAAATAAATGAAAAT
1 -AAATAAATTAAAAT
766754 AAATAAA
1 AAATAAA
766761 AAAGAATTGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
13 3 0.10
14 7 0.23
15 18 0.58
16 3 0.10
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (14 bp):
AAATAAATTAAAAT
Found at i:766752 original size:10 final size:9
Alignment explanation
Indices: 766708--766761 Score: 63
Period size: 9 Copynumber: 5.7 Consensus size: 9
766698 TGATCAAAAC
766708 ATAAAATAA
1 ATAAAATAA
*
766717 TTAAAATAA
1 ATAAAATAA
*
766726 TTAAAATTAAA
1 ATAAAA-T-AA
766737 ATAAAATAA
1 ATAAAATAA
766746 ATGAAAATAA
1 AT-AAAATAA
766756 ATAAAA
1 ATAAAA
766762 AAGAATTGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
9 22 0.55
10 11 0.28
11 7 0.17
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (9 bp):
ATAAAATAA
Found at i:767672 original size:7 final size:7
Alignment explanation
Indices: 767647--767718 Score: 81
Period size: 7 Copynumber: 10.0 Consensus size: 7
767637 TTTTTGCATG
*
767647 TTTCTAT
1 TTTCTTT
767654 TTTCATTCT
1 TTTC-TT-T
767663 TTTCTTT
1 TTTCTTT
767670 TTTCTTT
1 TTTCTTT
*
767677 TTTCCTT
1 TTTCTTT
767684 TTTCTTT
1 TTTCTTT
*
767691 TTTCCTT
1 TTTCTTT
*
767698 TTTCCTT
1 TTTCTTT
767705 TTTCTTT
1 TTTCTTT
*
767712 TTCCTTT
1 TTTCTTT
767719 CACAAAGAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTCTTT
Found at i:767686 original size:21 final size:21
Alignment explanation
Indices: 767662--767718 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
767652 ATTTTCATTC
767662 TTTTCTTTTTTCTTTTTTCCT
1 TTTTCTTTTTTCTTTTTTCCT
*
767683 TTTTCTTTTTTCCTTTTTCCT
1 TTTTCTTTTTTCTTTTTTCCT
*
767704 TTTTCTTTTTCCTTT
1 TTTTCTTTTTTCTTT
767719 CACAAAGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTTTCTTTTTTCCT
Found at i:770152 original size:22 final size:22
Alignment explanation
Indices: 770127--770169 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
770117 TACATCATGT
770127 ATTTATTACTTGAAAAACATTG
1 ATTTATTACTTGAAAAACATTG
*
770149 ATTTATTACTTGTAAAACATT
1 ATTTATTACTTGAAAAACATT
770170 TAGACTTGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.09, G:0.07, T:0.44
Consensus pattern (22 bp):
ATTTATTACTTGAAAAACATTG
Found at i:770897 original size:23 final size:23
Alignment explanation
Indices: 770867--770916 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
770857 TTTTGTTATA
* *
770867 TCAAAACCATAAAGAATGTATGT
1 TCAAAACCACAAAGAAGGTATGT
*
770890 TCAAAACCACAAAGAGGGTATGT
1 TCAAAACCACAAAGAAGGTATGT
770913 TCAA
1 TCAA
770917 GCAAGCATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (23 bp):
TCAAAACCACAAAGAAGGTATGT
Found at i:772698 original size:20 final size:20
Alignment explanation
Indices: 772652--772707 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 20
772642 CCATATAGTC
772652 GAAATGTATCGATAC-AATT
1 GAAATGTATCGATACAAATT
*
772671 TAAATGTATCGATACAAATT
1 GAAATGTATCGATACAAATT
* * *
772691 GCATTGTATCAATACAA
1 GAAATGTATCGATACAA
772708 TCTGGAAAAC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 14 0.45
20 17 0.55
ACGTcount: A:0.43, C:0.12, G:0.12, T:0.32
Consensus pattern (20 bp):
GAAATGTATCGATACAAATT
Found at i:778440 original size:25 final size:25
Alignment explanation
Indices: 778412--778462 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
778402 TCTAATAGGT
778412 AGGTGTTTGTGGAAGTTTGAATACA
1 AGGTGTTTGTGGAAGTTTGAATACA
778437 AGGTGTTTGTGGAAGTTTGAATACA
1 AGGTGTTTGTGGAAGTTTGAATACA
778462 A
1 A
778463 AGAGAATGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.35
Consensus pattern (25 bp):
AGGTGTTTGTGGAAGTTTGAATACA
Found at i:778808 original size:21 final size:21
Alignment explanation
Indices: 778755--778811 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
778745 CGTTAGGCCA
*
778755 TATGTATCGATACAA-TTCAC
1 TATGTATCGATACAATTTAAC
* * *
778775 TATATATCAATACAATTTAAT
1 TATGTATCGATACAATTTAAC
*
778796 TTTGTATCGATACAAT
1 TATGTATCGATACAAT
778812 GTATCGATAC
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
20 13 0.45
21 16 0.55
ACGTcount: A:0.39, C:0.14, G:0.07, T:0.40
Consensus pattern (21 bp):
TATGTATCGATACAATTTAAC
Found at i:778816 original size:13 final size:13
Alignment explanation
Indices: 778798--778822 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
778788 AATTTAATTT
778798 TGTATCGATACAA
1 TGTATCGATACAA
778811 TGTATCGATACA
1 TGTATCGATACA
778823 GTCGAAGGGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:778910 original size:33 final size:33
Alignment explanation
Indices: 778868--778934 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
778858 TATAATTCAT
778868 AATGTATCGATACAAAGCAATTTGTATCGATAC
1 AATGTATCGATACAAAGCAATTTGTATCGATAC
*** *
778901 AATGTATCGATATTTAGTAATTTGTATCGATAC
1 AATGTATCGATACAAAGCAATTTGTATCGATAC
778934 A
1 A
778935 TCTAGATGTG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.37, C:0.12, G:0.15, T:0.36
Consensus pattern (33 bp):
AATGTATCGATACAAAGCAATTTGTATCGATAC
Found at i:780999 original size:19 final size:21
Alignment explanation
Indices: 780958--780999 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 21
780948 AGTTGAGGTC
**
780958 TTTTCTTTTTTATTTTCTTCT
1 TTTTCTTTTTTATTTTCCCCT
780979 TTTTC-TTTTT-TTTTCCCCT
1 TTTTCTTTTTTATTTTCCCCT
780998 TT
1 TT
781000 GAAAGCTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
19 9 0.47
20 5 0.26
21 5 0.26
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTCTTTTTTATTTTCCCCT
Found at i:781779 original size:13 final size:13
Alignment explanation
Indices: 781761--781786 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
781751 CAATTTTTTG
781761 TGTATCGATACAT
1 TGTATCGATACAT
781774 TGTATCGATACAT
1 TGTATCGATACAT
781787 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:781798 original size:32 final size:33
Alignment explanation
Indices: 781741--781804 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
781731 TACAAGCCAA
**
781741 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
781774 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
781805 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:786412 original size:15 final size:15
Alignment explanation
Indices: 786392--786423 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
786382 ATTTCGTTTG
*
786392 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
786407 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
786422 GA
1 GA
786424 ACACTTTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.47
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:789932 original size:13 final size:13
Alignment explanation
Indices: 789914--789939 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
789904 CAATTTTTTG
789914 TGTATCGATACAT
1 TGTATCGATACAT
789927 TGTATCGATACAT
1 TGTATCGATACAT
789940 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:789951 original size:32 final size:33
Alignment explanation
Indices: 789894--789957 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
789884 TACAAGCCAA
**
789894 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
789927 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
789958 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:791460 original size:19 final size:19
Alignment explanation
Indices: 791435--791488 Score: 92
Period size: 19 Copynumber: 2.8 Consensus size: 19
791425 ATTCAACAAT
791435 TTGTATCGATACATAAGT-
1 TTGTATCGATACATAAGTA
791453 TGTGTATCGATACATAAGTA
1 T-TGTATCGATACATAAGTA
791473 TTGTATCGATACATAA
1 TTGTATCGATACATAA
791489 TTAGCTACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 1 0.03
19 32 0.94
20 1 0.03
ACGTcount: A:0.35, C:0.11, G:0.17, T:0.37
Consensus pattern (19 bp):
TTGTATCGATACATAAGTA
Found at i:791546 original size:13 final size:13
Alignment explanation
Indices: 791528--791553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
791518 CATTTTTCTG
791528 TGTATCGATACAT
1 TGTATCGATACAT
791541 TGTATCGATACAT
1 TGTATCGATACAT
791554 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:791550 original size:33 final size:33
Alignment explanation
Indices: 791508--791574 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
791498 GCCAAGGAAA
***
791508 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
791541 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
791574 T
1 T
791575 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:794075 original size:28 final size:27
Alignment explanation
Indices: 794005--794079 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 27
793995 AAATTTCACA
794005 ATCGGGGATACTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
794032 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
*
794058 TTCGAGGGGATACTCCAACCCC
1 ATC--GGGGATACTCCAACCCC
794080 CGACTTTATT
Statistics
Matches: 44, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
26 4 0.09
27 23 0.52
28 17 0.39
ACGTcount: A:0.24, C:0.33, G:0.20, T:0.23
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:794244 original size:53 final size:51
Alignment explanation
Indices: 794065--794286 Score: 182
Period size: 52 Copynumber: 4.3 Consensus size: 51
794055 ATTTTCGAGG
* * *** * *
794065 GGATACTCCAACCCCCGACTTTATTTCC-AAAATATTGATTTTTCATAATCGG
1 GGATACTCCAA--CCCGATTTTATTTCCAAAAACACCAATTTTTCCTAATCGA
* * * * * * *
794117 GGATACTCCAACCTCGGTTTTA-TTGCTAAAACACTAATTTTTCCACAATTGG
1 GGATACTCCAACC-CGATTTTATTTCCAAAAACACCAATTTTTCC-TAATCGA
*
794169 GGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTTTCCTTTAATCGA
1 GGATACTCCAA-CCCGATTTTATTTCCAAAAACACCAATTTTTCC--TAATCGA
* *
794222 GGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTATTCAC-AATCGA
1 GGATACTCCAAC-CCGATTTTATTTCCAAAAACACCAATTTTTC-CTAATCGA
794274 GGATACTCCAACC
1 GGATACTCCAACC
794287 TCGTTATCTC
Statistics
Matches: 142, Mismatches: 19, Indels: 19
0.79 0.11 0.11
Matches are distributed among these distances:
50 5 0.04
51 20 0.14
52 69 0.49
53 33 0.23
54 14 0.10
55 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.10, T:0.33
Consensus pattern (51 bp):
GGATACTCCAACCCGATTTTATTTCCAAAAACACCAATTTTTCCTAATCGA
Found at i:794245 original size:105 final size:103
Alignment explanation
Indices: 794063--794286 Score: 245
Period size: 105 Copynumber: 2.1 Consensus size: 103
794053 TTATTTTCGA
* *** *
794063 GGGGATACTCCAACCCCCGACTTTATTTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAA
1 GGGGATACTCCAA-CCCCGACTTTATTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCAA
* * * * * *
794128 CCTCGGTTTTA-TTGCTAAAACACTAATTTTTCCACAATT
65 CCTCGATTTTATTTCCAAAAACACCAATTATT-CACAATC
* * *
794167 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCCTTTAATCGAGGATACTCCA
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTT-C-ATAATCGAGGATACTCCA
*
794232 A-CTCCGATTTTATTTCCAAAAATACCAATTATTCACAATC
64 ACCT-CGATTTTATTTCCAAAAACACCAATTATTCACAATC
*
794272 GAGGATACTCCAACC
1 GGGGATACTCCAACC
794287 TCGTTATCTC
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
103 25 0.25
104 16 0.16
105 44 0.44
106 15 0.15
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.33
Consensus pattern (103 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAACACCAATTTTTCATAATCGAGGATACTCCAAC
CTCGATTTTATTTCCAAAAACACCAATTATTCACAATC
Found at i:794305 original size:28 final size:28
Alignment explanation
Indices: 794269--794345 Score: 93
Period size: 28 Copynumber: 2.8 Consensus size: 28
794259 ATTATTCACA
* *
794269 ATCGAGGATACTCCAACCTCGTTA-TCTC
1 ATCGGGGATACTCCAACCCCGTTACT-TC
794297 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
794325 CGAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
794346 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
28 42 0.98
29 1 0.02
ACGTcount: A:0.23, C:0.35, G:0.19, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:794377 original size:264 final size:263
Alignment explanation
Indices: 793894--794393 Score: 763
Period size: 264 Copynumber: 1.9 Consensus size: 263
793884 TTCTCAATTC
* * * * *
793894 TCCAAAATCGGGGATATTCCAACTCCGATTTTATTTTCAAGACACTAATTTTCTATAATCGGGGA
1 TCCAAAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGAGGA
*
793959 TACTCCAACTCCGATTTTATTTCCAAAAAAACACCAAAATTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCC-AAAAAACACCAAAATTTCACAATCGAGGATACTCCAACCC
* *
794024 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCCGACTTTAT
130 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTTTAT
* *
794089 TTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAA
195 TCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAA
794154 TTTT
260 TTTT
* * *
794158 TCCACAATTGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTTCCTTTAATCGAG
1 TCCAAAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAA-TTTT-CTATAATCGAG
* *
794223 GATACTCCAACTCCGATTTTATTTCC-AAAAATACC-AATTATTCACAATCGAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAAAT-TTCACAATCGAGGATACTCCAAC
* * *
794286 CTCGTTATCTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAA-CCCCGGCTT
128 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTT
*
794350 TATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACC
192 TATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
794394 CCGTTATTTT
Statistics
Matches: 213, Mismatches: 19, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
263 3 0.01
264 127 0.60
265 48 0.23
266 35 0.16
ACGTcount: A:0.30, C:0.27, G:0.13, T:0.31
Consensus pattern (263 bp):
TCCAAAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGAGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAAATTTCACAATCGAGGATACTCCAACCCC
GTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:799310 original size:21 final size:21
Alignment explanation
Indices: 799286--799340 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
799276 TTATCCAAAT
799286 GTATCGATACATTTGTAGAAC
1 GTATCGATACATTTGTAGAAC
* *
799307 GTATCGATACATTTGTGGAAT
1 GTATCGATACATTTGTAGAAC
799328 GTATCGATACATT
1 GTATCGATACATT
799341 CTACAAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.31, C:0.13, G:0.20, T:0.36
Consensus pattern (21 bp):
GTATCGATACATTTGTAGAAC
Found at i:799349 original size:21 final size:20
Alignment explanation
Indices: 799281--799359 Score: 77
Period size: 21 Copynumber: 3.8 Consensus size: 20
799271 AAAATTTATC
*
799281 CAAATGTATCGATACATTTG
1 CAAATGTATCGATACATTTA
* * *
799301 TAGAACGTATCGATACATTTGT
1 CA-AATGTATCGATACATTT-A
**
799323 GGAATGTATCGATACATTCTA
1 CAAATGTATCGATACATT-TA
799344 CAAATGTATCGATACA
1 CAAATGTATCGATACA
799360 GGGTCCTAAC
Statistics
Matches: 47, Mismatches: 9, Indels: 5
0.77 0.15 0.08
Matches are distributed among these distances:
20 1 0.02
21 45 0.96
22 1 0.02
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (20 bp):
CAAATGTATCGATACATTTA
Found at i:799419 original size:19 final size:19
Alignment explanation
Indices: 799395--799462 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
799385 AATTTAACAA
799395 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
799414 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
799429 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
799446 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
799463 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:799434 original size:13 final size:13
Alignment explanation
Indices: 799416--799440 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
799406 ACATAAGTTT
799416 TGTATCGATACAA
1 TGTATCGATACAA
799429 TGTATCGATACA
1 TGTATCGATACA
799441 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:799438 original size:32 final size:32
Alignment explanation
Indices: 799397--799459 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
799387 TTTAACAATT
*
799397 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
799429 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
799460 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:799520 original size:13 final size:13
Alignment explanation
Indices: 799502--799527 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
799492 CATTTTTCTG
799502 TGTATCGATACAT
1 TGTATCGATACAT
799515 TGTATCGATACAT
1 TGTATCGATACAT
799528 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:799524 original size:33 final size:33
Alignment explanation
Indices: 799482--799548 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
799472 GCCAAGGAAA
***
799482 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
799515 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
799548 T
1 T
799549 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:801941 original size:52 final size:52
Alignment explanation
Indices: 801828--801949 Score: 156
Period size: 52 Copynumber: 2.3 Consensus size: 52
801818 CCCGTTAATC
* * **
801828 ATCGGGGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTCCTTTA
1 ATCGGGGATACTCCAACCCCGATTTGATTTTCAAAACACCAATTTTCCTACA
* * *
801880 TTCGGGGATACTCCAACTCCGATTTGATTTTCAAAAACACCAATTTTTC-ACA
1 ATCGGGGATACTCCAACCCCGATTTGATTTTC-AAAACACCAATTTTCCTACA
*
801932 ATCGAGGATACTCCAACC
1 ATCGGGGATACTCCAACC
801950 TCGTTATTTC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
52 45 0.76
53 14 0.24
ACGTcount: A:0.30, C:0.26, G:0.11, T:0.32
Consensus pattern (52 bp):
ATCGGGGATACTCCAACCCCGATTTGATTTTCAAAACACCAATTTTCCTACA
Found at i:801968 original size:28 final size:28
Alignment explanation
Indices: 801932--802005 Score: 91
Period size: 28 Copynumber: 2.7 Consensus size: 28
801922 ATTTTTCACA
* *
801932 ATCGAGGATACTCCAA-CCTCGTTATTTC
1 ATCGGGGATACTCCAACCCT-GTTACTTC
801960 ATCGGGGATACTCCAACCCTGTTACTTC
1 ATCGGGGATACTCCAACCCTGTTACTTC
801988 --CGAGGGATACTCCAACCC
1 ATCG-GGGATACTCCAACCC
802006 CGGCTTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
26 2 0.05
27 15 0.36
28 22 0.52
29 3 0.07
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCTGTTACTTC
Found at i:802070 original size:78 final size:77
Alignment explanation
Indices: 801960--802193 Score: 238
Period size: 77 Copynumber: 3.0 Consensus size: 77
801950 TCGTTATTTC
* * * *
801960 ATCGGGGATACTCCAACCCTGTTACTTCCGAGGGATACTCCAACCCCGGCTTTATTTCCAAAATA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACCCC-GATTTATTTCCAAAATA
802025 TTGATTTCTCATA
65 TTGATTTCTCATA
* * * * *
802038 ATTGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAATCTCGATTT-TTTTC-TAATC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGATACTCCAACCCCGATTTATTTCCAAAAT-
* *
802101 ATCGATTTCTCACA
64 ATTGATTTCTCATA
* * * * * *
802115 ATCAGGGATACTCCAGCCCCGTTATTTTCAAGGGAACACTCCAACCCCGTTATTATCTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGG-ATACTCCAACCCCGAT-TTATTTCCAAAAT
*
802180 ATTAAATTTCTCAT
64 ATT-GATTTCTCAT
802194 CGAGAAATAT
Statistics
Matches: 124, Mismatches: 25, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
76 6 0.05
77 55 0.44
78 33 0.27
79 19 0.15
80 11 0.09
ACGTcount: A:0.26, C:0.27, G:0.14, T:0.32
Consensus pattern (77 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGATACTCCAACCCCGATTTATTTCCAAAATAT
TGATTTCTCATA
Found at i:806816 original size:20 final size:20
Alignment explanation
Indices: 806769--806843 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
806759 AAAAAGACAT
*
806769 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
806788 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
806809 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
806829 AATGTATCGATACAT
1 AATGTATCGATACAT
806844 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:806837 original size:40 final size:39
Alignment explanation
Indices: 806766--806843 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
806756 GGTAAAAAGA
* *
806766 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
806805 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
806844 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:807333 original size:45 final size:48
Alignment explanation
Indices: 807232--807340 Score: 134
Period size: 45 Copynumber: 2.3 Consensus size: 48
807222 CAATGTGCCA
* *
807232 ATTCAAAGCCAGCGACATTGGGCTAAGGGAAAAGTGGACCAATGTGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAA-GGAAAAGTGGACCAATATGCTG
* * *
807281 ACTCAAGGCCAGCGACATTGGGCTTA-GAAAGGT-G-CCAATATGCTG
1 ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
*
807326 ATTCAAGGCTAGCGA
1 ATTCAAGGCCAGCGA
807341 TATCAGACTT
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
45 23 0.43
46 1 0.02
47 6 0.11
49 23 0.43
ACGTcount: A:0.31, C:0.20, G:0.29, T:0.19
Consensus pattern (48 bp):
ATTCAAGGCCAGCGACATTGGGCTAAGGAAAAGTGGACCAATATGCTG
Found at i:807411 original size:32 final size:32
Alignment explanation
Indices: 807371--808355 Score: 1087
Period size: 32 Copynumber: 31.8 Consensus size: 32
807361 AAAATGGTGG
** * *
807371 TTTGAAAAGGGTTGCCACTAACTTGCGTGGGT
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * ** * * *
807403 TTTTAAAAGGGTTTCCACCGA-AAGTATTGAC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * *
807434 TTTTG-AAAGAGGTTCCCATCAACTTGTGTGGGC
1 -TTTGAAAAG-GGTTGCCACCGACTTGTGTGGGC
807467 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * *
807499 TTTGAAATGGGTTACCACCGACTTGTGTGGGG
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
807531 TTTGAAATGGGTTGCCATCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807563 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
807595 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807627 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * **
807659 TTTGAAATGGGTTACCACCGACTTACGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
807691 TTTGAAATA--G-TGCCGCCGACTTGTGTTGGC
1 TTTGAAA-AGGGTTGCCACCGACTTGTGTGGGC
* *
807721 TTTG-AAATGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807749 TTTAAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807781 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGA
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
807813 TTTGAAATGGGTTGCCATCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807845 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
807877 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
807909 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* **
807941 TTTGAAATGGGTTGCCACCGACTTACGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
807973 TTTGAAATA--G-TGCCACCGACTTGTGTGGGC
1 TTTGAAA-AGGGTTGCCACCGACTTGTGTGGGC
* * *
808003 TTTG-AAA-TGATGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
808031 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
808063 TTTGAAAAGGGTTGCTACCGACTTGTGTGGGA
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
*
808095 TTTGAAATGGGTTGCCACC-ACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
808126 TTTGAAATA--G-TGCCACCGACTTGTGTGGGC
1 TTTGAAA-AGGGTTGCCACCGACTTGTGTGGGC
* *
808156 TTTG-AAATGG-TGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
808184 TTTGAAAAGGGTTGCCACCGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * * *
808214 TTTG-AAA-GGATGCCACCAACTTCTGTGGAC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* *
808244 TTTGAAAA--GATGCCACTGAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* **
808272 TTTGAAAA--GATGCCACTAAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* **
808300 TTTGAAAAAGG-TGCCACTAAC-T-TGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
* * *
808329 TTT-AGAAGGGAATGCCACCGCCTTGTG
1 TTTGAAAAGGG-TTGCCACCGACTTGTG
808356 GACTTAAAAA
Statistics
Matches: 835, Mismatches: 85, Indels: 66
0.85 0.09 0.07
Matches are distributed among these distances:
28 91 0.11
29 56 0.07
30 154 0.18
31 33 0.04
32 492 0.59
33 9 0.01
ACGTcount: A:0.20, C:0.18, G:0.31, T:0.30
Consensus pattern (32 bp):
TTTGAAAAGGGTTGCCACCGACTTGTGTGGGC
Found at i:807964 original size:282 final size:281
Alignment explanation
Indices: 807460--808355 Score: 1380
Period size: 282 Copynumber: 3.2 Consensus size: 281
807450 CATCAACTTG
* * *
807460 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTACCACCGACTTGT
1 TGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGT
*
807525 GTGGGGTTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
66 GTGGGATTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
807590 TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
131 TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
* *
807655 GGGCTTTGAAATGGGTTACCACCGACTTACGTGGGCTTTGAAATAGTGCCGCCGACTTGTGTTGG
196 GGGCTTTGAAATGGGTTGCCACCGACTTACGTGGGCTTTGAAATAGTGCCACCGACTTGTG-TGG
*
807720 CTTTGAAATGGTGCCACTGACT
260 CTTTGAAATGATGCCACTGACT
807742 TGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGT
1 TGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGT
807807 GTGGGATTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
66 GTGGGATTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
807872 TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
131 TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
807937 GGGCTTTGAAATGGGTTGCCACCGACTTACGTGGGCTTTGAAATAGTGCCACCGACTTGTGTGGG
196 GGGCTTTGAAATGGGTTGCCACCGACTTACGTGGGCTTTGAAATAGTGCCACCGACTTGTGT-GG
808002 CTTTGAAATGATGCCACTGACT
260 CTTTGAAATGATGCCACTGACT
* *
808024 TGTGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCTACCGACTTGT
1 TGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGT
* *
808089 GTGGGATTTGAAATGGGTTGCCA-CCACTTGTGTGGGCTTTGAAAT-AG-TGCCACCGACTTGTG
66 GTGGGATTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
* * *
808151 TGGGCTTTG-AAATGG-TGCCACTGAC-T-TGTGGGCTTTGAAAAGGGTTGCCACCGAC-T-TGT
131 TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
* * * *
808210 GGGCTTTGAAA--GGATGCCACCAACTT-CTGTGGACTTTGAAA-AGATGCCACTGACTTGTG-G
196 GGGCTTTGAAATGGGTTGCCACCGACTTAC-GTGGGCTTTGAAATAG-TGCCACCGACTTGTGTG
* *
808270 GCTTTGAAAAGATGCCACTAACT
259 GCTTTGAAATGATGCCACTGACT
** * * *
808293 TGTGGGCTTTGAAAAA-GG-TGCCACTAAC-T-TGTGGGCTTT-AGAAGGGAATGCCACCGCCTT
1 TGTGGGCTTT-AAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGG-TTGCCACCGACTT
808353 GTG
64 GTG
808356 GACTTAAAAA
Statistics
Matches: 582, Mismatches: 27, Indels: 26
0.92 0.04 0.04
Matches are distributed among these distances:
265 6 0.01
266 23 0.04
267 1 0.00
268 8 0.01
269 34 0.06
270 7 0.01
271 39 0.07
273 14 0.02
274 1 0.00
275 28 0.05
276 1 0.00
277 9 0.02
278 5 0.01
279 24 0.04
280 1 0.00
281 22 0.04
282 359 0.62
ACGTcount: A:0.20, C:0.19, G:0.32, T:0.30
Consensus pattern (281 bp):
TGTGGGCTTTAAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTGCCACCGACTTGT
GTGGGATTTGAAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTG
TGGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGT
GGGCTTTGAAATGGGTTGCCACCGACTTACGTGGGCTTTGAAATAGTGCCACCGACTTGTGTGGC
TTTGAAATGATGCCACTGACT
Done.