Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold448
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1056520
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
File 6 of 7
Found at i:808036 original size:28 final size:28
Alignment explanation
Indices: 807460--808985 Score: 779
Period size: 28 Copynumber: 51.6 Consensus size: 28
807450 CATCAACTTG
*
807460 TGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
* *
807491 GTGTGGGCTTTGAAATGGGTTACCACCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
* * *
807523 GTGTGGGGTTTGAAATGGGTTGCCATCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
807555 GTGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
807587 GTGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 -TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
*
807619 GTGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
* *
807651 GTGTGGGCTTTGAAATGGGTTACCACCGACT
1 -TGTGGGCTTTGAAA--GGATGCCACCGACT
* *
807682 TACGTGGGCTTTGAAA-TAGTGCCGCCGACT
1 T--GTGGGCTTTGAAAGGA-TGCCACCGACT
*
807712 TGTGTTGGCTTTGAAATGG-TGCCACTGACT
1 TGTG--GGCTTTGAAA-GGATGCCACCGACT
* *
807742 TGTGGGCTTTAAAAAGGGTTGCCACCGACTT
1 TGTGGGCTTT-GAAA-GGATGCCACCGAC-T
*
807773 GTGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 -TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
* * *
807805 GTGTGGGATTTGAAATGGGTTGCCATCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
807837 GTGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
807869 GTGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 -TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
*
807901 GTGTGGGCTTTGAAATGGGTTGCCACCGACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
807933 GTGTGGGCTTTGAAATGGGTTGCCACCGACT
1 -TGTGGGCTTTGAAA--GGATGCCACCGACT
*
807964 TACGTGGGCTTTGAAA-TAGTGCCACCGACTT
1 T--GTGGGCTTTGAAAGGA-TGCCACCGAC-T
* *
807995 GTGTGGGCTTTGAAATGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGATGCCACCGACT
*
808024 TGTGGGCTTTGAAAAGGGTTGCCACCGACTT
1 TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
* *
808055 GTGTGGGCTTTGAAAAGGGTTGCTACCGACTT
1 -TGTGGGCTTTG-AAA-GGATGCCACCGAC-T
* *
808087 GTGTGGGATTTGAAATGGGTTGCCACC-ACTT
1 -TGTGGGCTTTGAAA--GGATGCCACCGAC-T
*
808118 GTGTGGGCTTTGAAA-TAGTGCCACCGACTT
1 -TGTGGGCTTTGAAAGGA-TGCCACCGAC-T
*
808148 GTGTGGGCTTTGAAATGG-TGCCACTGACT
1 -TGTGGGCTTTGAAA-GGATGCCACCGACT
*
808177 TGTGGGCTTTGAAAAGGGTTGCCACCGACT
1 TGTGGGCTTTG-AAA-GGATGCCACCGACT
*
808207 TGTGGGCTTTGAAAGGATGCCACCAACTT
1 TGTGGGCTTTGAAAGGATGCCACCGAC-T
* * *
808236 CTGTGGACTTTGAAAAGATGCCACTGACT
1 -TGTGGGCTTTGAAAGGATGCCACCGACT
* **
808265 TGTGGGCTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
**
808293 TGTGGGCTTTGAAAAAGG-TGCCACTAACT
1 TGTGGGCTTTG--AAAGGATGCCACCGACT
* *
808322 TGTGGGCTTTAGAAGGGAATGCCACCGCCT
1 TGTGGGCTTT-GAAAGG-ATGCCACCGACT
* ** * *
808352 TGTGGACTTAAAAAGGGTGCCA-CGAAGT
1 TGTGGGCTTTGAAAGGATGCCACCG-ACT
* ** * * *
808380 TGAGAAC-TTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
* * * *
808408 TGT-GGATTTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
*** * * *
808436 TGTGGGCTCAAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * * * *
808464 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * * *
808492 TGTGGAC-TTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
* *** * * *
808520 TGTGGACTCAAAAAGGGTGCCACAGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * * * *
808548 TGTGGACTTTAAAACGG-TGCTACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
* * * *
808576 TGTGGAC-TTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
* * * *
808604 TGTGGAC-TTAAAAGGGATGCCACGGAGT
1 TGTGGGCTTTGAAA-GGATGCCACCGACT
* *** * * *
808632 TGTGGACTCAAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * * * *
808660 TGTGGACTTTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * *
808688 TGTGGAC-TTAAAAGGGATGCCA-CGAAGT
1 TGTGGGCTTTGAAA-GGATGCCACCG-ACT
* * * * *
808716 TGTGGAC-TTAAAAGGGTGCCACGGAGT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * * *
808743 TGTGGAC-TTAAAAGGGTGCCACGGACT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
*
808770 TGTGGGCTTTGAAAGGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACCGACT
* *
808799 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * *
808827 TGTGGGCTTTAAAAAGA-GCACCACTGACT
1 TGTGGGCTTTGAAAGGATG--CCACCGACT
*
808856 TGTGGGCTTTGAAAAGG-TGCCACTGACT
1 TGTGGGCTTTG-AAAGGATGCCACCGACT
* * *
808884 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGATGCCACCGACT
* * *
808912 TGTGGGCTTTGAAAAGAGTGCCACTGATT
1 TGTGGGCTTTGAAAGGA-TGCCACCGACT
* *
808941 TGTGGGCTTTGAAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGA-TGCCACCGACT
808970 TGTGGGCTTTGAAAGG
1 TGTGGGCTTTGAAAGG
808986 GATGAATATT
Statistics
Matches: 1318, Mismatches: 113, Indels: 129
0.84 0.07 0.08
Matches are distributed among these distances:
27 76 0.06
28 426 0.32
29 168 0.13
30 184 0.14
31 39 0.03
32 419 0.32
33 6 0.00
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.27
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGATGCCACCGACT
Found at i:810238 original size:12 final size:11
Alignment explanation
Indices: 810205--810266 Score: 54
Period size: 11 Copynumber: 5.5 Consensus size: 11
810195 GACCCTTCTA
* *
810205 TTTTTTGCTAT
1 TTTTTTGTTTT
*
810216 TTTTTTCTTTT
1 TTTTTTGTTTT
810227 TCTTTGTT-TTTT
1 T-TTT-TTGTTTT
*
810239 TGTTTTGTTTT
1 TTTTTTGTTTT
810250 TTGTTTTGTTTT
1 TT-TTTTGTTTT
810262 TTTTT
1 TTTTT
810267 GGGTGTAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
10 2 0.05
11 19 0.45
12 19 0.45
13 2 0.05
ACGTcount: A:0.02, C:0.05, G:0.10, T:0.84
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:810239 original size:13 final size:12
Alignment explanation
Indices: 810223--810266 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
810213 TATTTTTTTC
*
810223 TTTTTCTTTGTT
1 TTTTTTTTTGTT
810235 TTTTTGTTTTGTT
1 TTTTT-TTTTGTT
*
810248 TTTTGTTTTGTT
1 TTTTTTTTTGTT
810260 TTTTTTT
1 TTTTTTT
810267 GGGTGTAAAG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
12 18 0.64
13 10 0.36
ACGTcount: A:0.00, C:0.02, G:0.11, T:0.86
Consensus pattern (12 bp):
TTTTTTTTTGTT
Found at i:810244 original size:17 final size:17
Alignment explanation
Indices: 810224--810266 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
810214 ATTTTTTTCT
810224 TTTTCTTTGTTT-TTTTG
1 TTTTCTTT-TTTGTTTTG
*
810241 TTTTGTTTTTTGTTTTG
1 TTTTCTTTTTTGTTTTG
810258 TTTT-TTTTT
1 TTTTCTTTTT
810267 GGGTGTAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
16 8 0.33
17 16 0.67
ACGTcount: A:0.00, C:0.02, G:0.12, T:0.86
Consensus pattern (17 bp):
TTTTCTTTTTTGTTTTG
Found at i:823290 original size:20 final size:20
Alignment explanation
Indices: 823243--823317 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
823233 AAAAAGACAT
*
823243 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
823262 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
823283 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
823303 AATGTATCGATACAT
1 AATGTATCGATACAT
823318 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:823311 original size:40 final size:39
Alignment explanation
Indices: 823240--823317 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
823230 GGTAAAAAGA
* *
823240 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
823279 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
823318 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:830890 original size:19 final size:19
Alignment explanation
Indices: 830850--830892 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
830840 ACCTTCTCTT
830850 AAAAA-AAAGCAAAAAAAA
1 AAAAAGAAAGCAAAAAAAA
*
830868 AAAAAGAAA-CAAAACAAAG
1 AAAAAGAAAGCAAAA-AAAA
830887 AAAAAG
1 AAAAAG
830893 GAGAGAAAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (19 bp):
AAAAAGAAAGCAAAAAAAA
Found at i:831769 original size:19 final size:19
Alignment explanation
Indices: 831738--831781 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
831728 ACCTTCTCTT
*
831738 AAAAAA-AAGCAAAAAAAA
1 AAAAAAGAAACAAAAAAAA
*
831756 AAAAAAGAAACAAAACAAA
1 AAAAAAGAAACAAAAAAAA
*
831775 GAAAAAG
1 AAAAAAG
831782 GAGAGAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 6 0.27
19 16 0.73
ACGTcount: A:0.84, C:0.07, G:0.09, T:0.00
Consensus pattern (19 bp):
AAAAAAGAAACAAAAAAAA
Found at i:833084 original size:176 final size:174
Alignment explanation
Indices: 832790--833314 Score: 747
Period size: 176 Copynumber: 3.0 Consensus size: 174
832780 AGGACGCCTT
* * *
832790 CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAATCCTTAAAGAGCAGGACGCCTTCTCC
1 CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGACGCCTTCT-C
*
832855 TTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCGGGACGCCTTTTCTTTCA
65 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCGGGACGCCTTTTCTTT-A
* *
832920 AAGCCCACACAAGTTGGTGGCACCTTTCCGTCCCCAAAGAGCAGGA
129 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
832966 CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGACGCCTTCTCT
1 CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGACGCCTTCTC-
*
833031 TTTTAAAACCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCGGGACGCCTTTTCTTTTA
65 TTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCGGGACGCCTTTTC-TTTA
*
833096 AAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGA
129 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
* * * *
833141 CGCCTTTTTTTTTAAAGCCCACACAAGTTGGTGGCACCT-TCAGTCCTCAAAGAGCGGGACGCAT
1 CACC-----TTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGACGCCT
* ** * *
833205 TTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACGCC---T-T
61 TCTCTTTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCGGGACGCCTTTTCT
* * *
833266 TTAAAGCCCACACGAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGA
126 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
833315 TACACTTTAT
Statistics
Matches: 319, Mismatches: 22, Indels: 18
0.89 0.06 0.05
Matches are distributed among these distances:
173 26 0.08
174 19 0.06
175 23 0.07
176 143 0.45
177 3 0.01
178 50 0.16
179 26 0.08
180 29 0.09
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (174 bp):
CACCTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGTCCTCAAAGAGCAGGACGCCTTCTCT
TTTAAAGCCCACACAAGTTGGTGGCATTTTTTAGTCCTCAAAGAGCGGGACGCCTTTTCTTTAAA
GCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
Found at i:833148 original size:59 final size:59
Alignment explanation
Indices: 832769--833314 Score: 664
Period size: 61 Copynumber: 9.3 Consensus size: 59
832759 GCTTTTTAGC
* * ** *
832769 CCTCAAAAAGTAGGACGCCTTCACCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCCAAT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACCTT--CAGT
* * **
832830 CCTTAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCTAGT
1 CCTCAAAGAGCAGGACGCCTT-TTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTC-AGT
* * *
832891 CCTCAAAGAGCGGGACGCCTTTTCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCCGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGT
* * *
832951 CCCCAAAGAGCAGGAC-AC----CTTTTAAAGCCCACACAAGTTGGTGGCACTTCTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCT-TCAGT
* * ** *
833006 CCTCAAAGAGCAGGACGCCTTCTCTTTTTAAAACCCACACAAGTTGGTGGCATTTTTTAGT
1 CCTCAAAGAGCAGGACGCCTTTTC-TTTTAAAGCCCACACAAGTTGGTGGCA-CCTTCAGT
*
833067 CCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
* *
833126 CCTCAAAGAGCGGGACGCCTTTTTTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
* *
833185 CCTCAAAGAGCGGGACGCATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTCAGT
* * *
833245 CCTCAAAGAGCAGGACG-C----CTTTTAAAGCCCACACGAGTTGGTGGCACTTTTTAGT
1 CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCAGT
833300 CCTCAAAGAGCAGGA
1 CCTCAAAGAGCAGGA
833315 TACACTTTAT
Statistics
Matches: 434, Mismatches: 38, Indels: 32
0.86 0.08 0.06
Matches are distributed among these distances:
54 1 0.00
55 95 0.22
56 1 0.00
59 115 0.26
60 94 0.22
61 124 0.29
62 4 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (59 bp):
CCTCAAAGAGCAGGACGCCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCAGT
Found at i:834110 original size:42 final size:43
Alignment explanation
Indices: 834020--834119 Score: 150
Period size: 42 Copynumber: 2.4 Consensus size: 43
834010 AAAAAAATTC
*
834020 CAAATGTATCGATACATTTGTAGAATGTATCGATACATTTGTA
1 CAAATGTATCGATACATTTGTAGAATGTATCGATACATTTCTA
* *
834063 -GAATGTATCGATACATTTGTGGAATGTATCGATACA-TTCTA
1 CAAATGTATCGATACATTTGTAGAATGTATCGATACATTTCTA
*
834104 CAAATGTATTGATACA
1 CAAATGTATCGATACA
834120 GGGTCCCAAC
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
41 4 0.08
42 47 0.92
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (43 bp):
CAAATGTATCGATACATTTGTAGAATGTATCGATACATTTCTA
Found at i:834112 original size:21 final size:21
Alignment explanation
Indices: 834022--834100 Score: 149
Period size: 21 Copynumber: 3.8 Consensus size: 21
834012 AAAAATTCCA
834022 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
834043 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
834064 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
834085 AATGTATCGATACATT
1 AATGTATCGATACATT
834101 CTACAAATGT
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
21 57 1.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:834179 original size:19 final size:19
Alignment explanation
Indices: 834155--834222 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
834145 AATTCAATAA
834155 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
834174 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
834189 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
834206 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
834223 TTAGCTACTA
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:834193 original size:32 final size:32
Alignment explanation
Indices: 834157--834219 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
834147 TTCAATAATT
*
834157 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
834189 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
834220 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:834194 original size:13 final size:13
Alignment explanation
Indices: 834176--834200 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
834166 ACATAAGTTT
834176 TGTATCGATACAA
1 TGTATCGATACAA
834189 TGTATCGATACA
1 TGTATCGATACA
834201 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:836772 original size:54 final size:50
Alignment explanation
Indices: 836654--837043 Score: 166
Period size: 52 Copynumber: 7.4 Consensus size: 50
836644 CTCAATTCTC
* * * *
836654 CACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTT
1 CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACAAAATTT
*
836704 CTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAAACACCAAAATTT
1 C-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC---AAAACA-CAAAATTT
* * * * ***
836759 CACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCC-AACCCCGTTATTT
1 CACAATCGGGGATACTCCAACTCCGATT--T--T-----AT-TTCCAAAACACAAAATTT
* * * * ** **
836817 C-CGA--GGGGATACTCCAACCCCCGACTTTATTTCCAAAATATTGATTTTT
1 CACAATCGGGGATACTCCAA-CTCCGATTTTATTTCCAAAACA-CAAAATTT
* * * * **
836866 CATAATCGGGGATACTCCAAC-CTCGGTTTTATTGCTAAAACACTAATTTTT
1 CACAATCGGGGATACTCCAACTC-CGATTTTATTTCCAAAACAC-AAAATTT
* * **
836917 CCACAATCGGGGATACTCCAAAC-CCGGTTTTATTTTCAAAACACCAATTTTT
1 -CACAATCGGGGATACTCC-AACTCCGATTTTATTTCCAAAACA-CAAAATTT
* * **
836969 C-CTTTAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
1 CAC---AATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAACA-CAAAATTT
*
837023 CACAATCGAGGATACTCCAAC
1 CACAATCGGGGATACTCCAAC
837044 CTCGTTATCT
Statistics
Matches: 268, Mismatches: 39, Indels: 64
0.72 0.11 0.17
Matches are distributed among these distances:
47 3 0.01
48 4 0.01
49 6 0.02
50 4 0.01
51 54 0.20
52 74 0.28
53 34 0.13
54 43 0.16
55 23 0.09
56 5 0.02
57 4 0.01
58 6 0.02
59 3 0.01
62 2 0.01
63 3 0.01
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (50 bp):
CACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACAAAATTT
Found at i:836793 original size:27 final size:28
Alignment explanation
Indices: 836763--836837 Score: 107
Period size: 27 Copynumber: 2.7 Consensus size: 28
836753 AAATTTCACA
836763 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
836790 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
***
836818 CGAGGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
836838 CGACTTTATT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 24 0.56
28 19 0.44
ACGTcount: A:0.24, C:0.35, G:0.20, T:0.21
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:837001 original size:53 final size:51
Alignment explanation
Indices: 836860--837044 Score: 196
Period size: 52 Copynumber: 3.5 Consensus size: 51
836850 CAAAATATTG
* * * * *
836860 ATTTTTCATAATCGGGGATACTCCAACCTCGGTTTTA-TTGCTAAAACACTA
1 ATTTTTCCTAATCGAGGATACTCCAACC-CGGTTTTATTTCCAAAAACACCA
* * *
836911 ATTTTTCCACAATCGGGGATACTCCAAACCCGGTTTTATTTTC-AAAACACCA
1 ATTTTTCC-TAATCGAGGATACTCC-AACCCGGTTTTATTTCCAAAAACACCA
* *
836963 ATTTTTCCTTTAATCGAGGATACTCCAACTCCGATTTTATTTCCAAAAATACCA
1 ATTTTTCC--TAATCGAGGATACTCCAAC-CCGGTTTTATTTCCAAAAACACCA
837017 ATTTTTCAC-AATCGAGGATACTCCAACC
1 ATTTTTC-CTAATCGAGGATACTCCAACC
837045 TCGTTATCTC
Statistics
Matches: 117, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
51 8 0.07
52 60 0.51
53 33 0.28
54 15 0.13
55 1 0.01
ACGTcount: A:0.31, C:0.25, G:0.11, T:0.34
Consensus pattern (51 bp):
ATTTTTCCTAATCGAGGATACTCCAACCCGGTTTTATTTCCAAAAACACCA
Found at i:837063 original size:28 final size:28
Alignment explanation
Indices: 837027--837101 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 28
837017 ATTTTTCACA
* *
837027 ATCGAGGATACTCCAACCTCGTTA-TCTC
1 ATCGGGGATACTCCAACCCCGTTACT-TC
837055 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCCCGTTACTTC
***
837083 CGAGGGGATACTCCAACCC
1 ATCGGGGATACTCCAACCC
837102 TGGCTTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 40 0.98
29 1 0.02
ACGTcount: A:0.24, C:0.35, G:0.19, T:0.23
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTACTTC
Found at i:837122 original size:264 final size:263
Alignment explanation
Indices: 836652--837151 Score: 781
Period size: 264 Copynumber: 1.9 Consensus size: 263
836642 TTCTCAATTC
* * *
836652 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGAGGA
*
836717 TACTCCAACTCCGATTTTATTTCCAAAAAAACACCAAAATTTCACAATCGGGGATACTCCAACCC
66 TACTCCAACTCCGATTTTATTTCC-AAAAAACACCAAAATTTCACAATCGAGGATACTCCAACCC
*
836782 CGTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCCGACTTTAT
130 CGTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTTTAT
* *
836847 TTCCAAAATATTGATTTTTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAA
195 TCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAA
836912 TTTT
260 TTTT
* *
836916 TCCACAATCGGGGATACTCCAAAC-CCGGTTTTATTTTCAAAACACCAATTTTTCCTTTAATCGA
1 TCCACAATCGGGGATACTCC-AACTCCGATTTTATTTTCAAAACACCAA-TTTT-CTATAATCGA
* **
836980 GGATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTTTTCACAATCGAGGATACTCCAAC
63 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAAATTTCACAATCGAGGATACTCCAAC
* * * *
837044 CTCGTTATCTCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAA-CCCTGGCTT
128 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTT
*
837108 TATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACC
192 TATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
837152 CCGTTATTTT
Statistics
Matches: 215, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
264 128 0.60
265 52 0.24
266 35 0.16
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (263 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGAGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAAATTTCACAATCGAGGATACTCCAACCCC
GTTAATCATCGGGGATACTCCAACCCCGTTACTTCCGAGGGGATACTCCAACCCCCGACTTTATT
CCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAAT
TTT
Found at i:841451 original size:23 final size:22
Alignment explanation
Indices: 841425--841475 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
841415 GTTTTTTTGT
*
841425 TTTAATTAGGCTTTTAGTTTAGA
1 TTTAA-TAGGCTTTTAATTTAGA
*
841448 TTTAGATGGGCTTTTAATTTAGA
1 TTTA-ATAGGCTTTTAATTTAGA
841471 TTTAA
1 TTTAA
841476 ATGGGTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 1 0.04
23 23 0.92
24 1 0.04
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (22 bp):
TTTAATAGGCTTTTAATTTAGA
Found at i:841479 original size:23 final size:23
Alignment explanation
Indices: 841433--841496 Score: 78
Period size: 23 Copynumber: 2.8 Consensus size: 23
841423 GTTTTAATTA
* *
841433 GGCTTTTAGTTTAGATTTAGATG
1 GGCTTTTAATTTAGATTTAAATG
841456 GGCTTTTAATTTAGATTTAAATG
1 GGCTTTTAATTTAGATTTAAATG
*
841479 GG--TTTAAGTTTAAATTTA
1 GGCTTTTAA-TTTAGATTTA
841497 TATTTTATTA
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.14
22 9 0.24
23 23 0.62
ACGTcount: A:0.28, C:0.03, G:0.20, T:0.48
Consensus pattern (23 bp):
GGCTTTTAATTTAGATTTAAATG
Found at i:842100 original size:22 final size:21
Alignment explanation
Indices: 842075--842116 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
842065 AAAATAAAAA
842075 ATAT-TTTTAT-ATTAATATTT
1 ATATATTTTATAATTAA-ATTT
842095 ATATATTTTATAATTAAATTT
1 ATATATTTTATAATTAAATTT
842116 A
1 A
842117 AAAAATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 11 0.55
22 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATATATTTTATAATTAAATTT
Found at i:842166 original size:16 final size:16
Alignment explanation
Indices: 842142--842191 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
842132 TAATTAAAAT
*
842142 ATTATTTTAAAATTAA
1 ATTAATTTAAAATTAA
842158 ATTAATTTAAAA-T-A
1 ATTAATTTAAAATTAA
* *
842172 ATAAAATTTAAATTTAA
1 AT-TAATTTAAAATTAA
842189 ATT
1 ATT
842192 TAATAAGATC
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
14 3 0.11
15 9 0.33
16 12 0.44
17 3 0.11
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATTAATTTAAAATTAA
Found at i:842395 original size:6 final size:6
Alignment explanation
Indices: 842384--842411 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
842374 CCTTGCCCAA
842384 TGCCCG TGCCCG TGCCCG TGCCCG TGCC
1 TGCCCG TGCCCG TGCCCG TGCCCG TGCC
842412 TCCCCTCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.50, G:0.32, T:0.18
Consensus pattern (6 bp):
TGCCCG
Found at i:842787 original size:19 final size:19
Alignment explanation
Indices: 842763--842803 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
842753 AATAATTTAA
*
842763 TAAATATG-TATAATATATT
1 TAAATATGAT-TAATATAAT
842782 TAAATATGATTAATATAAT
1 TAAATATGATTAATATAAT
842801 TAA
1 TAA
842804 CTTGATATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 19 0.95
20 1 0.05
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (19 bp):
TAAATATGATTAATATAAT
Found at i:844104 original size:2 final size:2
Alignment explanation
Indices: 844097--844131 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
844087 ATTGTTATTT
844097 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG T
844132 TCTTTAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:844409 original size:26 final size:26
Alignment explanation
Indices: 844374--844423 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
844364 GTAAATGAAT
844374 TTTTATTTTTATTTTC-ATCTTTTTGA
1 TTTTATTTTT-TTTTCTATCTTTTTGA
* *
844400 TTTTGTTTTTTTTTCTATTTTTTT
1 TTTTATTTTTTTTTCTATCTTTTT
844424 ACTTGCTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 5 0.24
26 16 0.76
ACGTcount: A:0.10, C:0.06, G:0.04, T:0.80
Consensus pattern (26 bp):
TTTTATTTTTTTTTCTATCTTTTTGA
Found at i:850020 original size:2 final size:2
Alignment explanation
Indices: 850013--850089 Score: 61
Period size: 2 Copynumber: 39.0 Consensus size: 2
850003 TCCAATTCAT
* * * *
850013 TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA AA TG TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
850055 CCA -A T- TCA T- TA TA TA TA TA TA TA TA TA TG TA TA TA
1 -TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA
850090 AATGTGTATT
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
1 3 0.05
2 56 0.92
3 2 0.03
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:850941 original size:14 final size:16
Alignment explanation
Indices: 850922--850959 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
850912 AAGGTTAAAA
850922 AATAAAA-AA-ATAAT
1 AATAAAATAAGATAAT
850936 AATAAAAATAAGATAAT
1 AAT-AAAATAAGATAAT
850953 AATAAAA
1 AATAAAA
850960 GAGAGGCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 3 0.14
15 4 0.19
16 6 0.29
17 8 0.38
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAAAATAAGATAAT
Found at i:850944 original size:20 final size:20
Alignment explanation
Indices: 850919--850957 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
850909 CAGAAGGTTA
850919 AAAAATAAAAAAATAATAAT
1 AAAAATAAAAAAATAATAAT
* *
850939 AAAAATAAGATAATAATAA
1 AAAAATAAAAAAATAATAA
850958 AAGAGAGGCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (20 bp):
AAAAATAAAAAAATAATAAT
Found at i:853147 original size:21 final size:20
Alignment explanation
Indices: 853106--853150 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
853096 AAATTCATTC
853106 TTTTCCATGAATTTTTATTT
1 TTTTCCATGAATTTTTATTT
* *
853126 TTTTCCTTGAAATTTCT-TTT
1 TTTTCCATG-AATTTTTATTT
853146 TTTTC
1 TTTTC
853151 AAAATACGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 16 0.73
21 6 0.27
ACGTcount: A:0.16, C:0.13, G:0.04, T:0.67
Consensus pattern (20 bp):
TTTTCCATGAATTTTTATTT
Found at i:853580 original size:163 final size:164
Alignment explanation
Indices: 853358--853801 Score: 586
Period size: 166 Copynumber: 2.7 Consensus size: 164
853348 TGCTAAGATT
* *** *
853358 TTTTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCGCGTTAATTCAATTTTCAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATT
* *
853423 CATTTATTTTCATAAATTTTGAATTTTTTCCTTGAAATTCCTTTTTTTTAAATATAGAGTTTTCT
66 CATTCATTTTCATAAATTTTGAATTTTTTCCTTGAAATTCCTTTTTTTTAAATACAGA-TTTTCT
*
853488 ACTCCTTAAATTTTTT-G-GGAGCATTTTTCTTGG
130 ACTCCGTAAATTTTTTCGAGGAGCATTTTTCTTGG
*
853521 TTTTTAATTTTTAAAATTCATCAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATT
* * * **
853586 CATTCATTTCCATAAATTTTAAATTTTTTTCTTGAAATTTACCTTTTTTCAAAATACAGATTTTC
66 CATTCATTTTCATAAATTTTGAATTTTTTCCTTGAAA-TT-CCTTTTTTTTAAATACAGATTTTC
* ** * *
853651 TACTCCGTAAATTTTTTCGAGGGGTTTTTTTTTTGT
129 TACTCCGTAAATTTTTTCGAGGAGCATTTTTCTTGG
* ** *
853687 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAACCAGTTTTAAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATT
* * * * *
853752 AATTCATTTTCATGAGTTTTGAATTTTTTCTTTGAAAATCTCTTTTTTTT
66 CATTCATTTTCATAAATTTTGAATTTTTTCCTTGAAATTC-CTTTTTTTT
853802 TTTTCGAGAA
Statistics
Matches: 242, Mismatches: 34, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
163 92 0.38
164 24 0.10
165 25 0.10
166 101 0.42
ACGTcount: A:0.30, C:0.10, G:0.06, T:0.54
Consensus pattern (164 bp):
TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCAAATTAATTCAGTTTTCAAAAATT
CATTCATTTTCATAAATTTTGAATTTTTTCCTTGAAATTCCTTTTTTTTAAATACAGATTTTCTA
CTCCGTAAATTTTTTCGAGGAGCATTTTTCTTGG
Found at i:853583 original size:320 final size:321
Alignment explanation
Indices: 852707--853801 Score: 1250
Period size: 329 Copynumber: 3.4 Consensus size: 321
852697 TTTTTCTTGG
* * *
852707 TTTTTAATTTTTAAAATTCATCAAATATTATTACTTATTTCACATTAATTCAGTTTTCAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCACGTTAATTCAGTTTTCAAAAATT
* * *
852772 CATTCATTTCCATGAATTTTTAATTTTTTTCCTTGAAATTCCCCTTTTTCTAAAATACGAAGTTT
66 CATTTATTTCCATGAATTTTTAA-TTTTTTCCTTGAAATT-CCTTTTTTTTAAAATACG-AGTTT
* *
852837 TCTACTCTGTAAATTTTTTCGGGAGGATTTTTCTTGGTTTTTAATTTTTAAAATTTATTAAATAT
128 TCTACTCTATAAATTTTTTCGGGA-GATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAATAT
*
852902 TATTATTTATTTCATATTAATTCAGTTTTC-AAAATTCATTCATTTACATAAATTTTGAATTTTT
192 TATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTT
* * * * *
852966 TCCTTCAAA-TTTTTTTTCGAAGTACGGAGTTTTCTTCTCCGTAAATTTTTCTCGGGAGGATTTT
257 TCCTTGAAATTTTTTTTTCGAAATACGAAGTTTTCTTCTCCGTAAATTTTTCTCGCGAAGA---T
853030 TCT
319 TCT
* * *
853033 TAGTTTTTAATTTTTAAAATTCATCAAATAATATTATTTATTTCATAG-TAATTTAGTTTTCAAA
1 T--TTTTT-ATTTTTAAAATTCATCAAATATTATTATTTATTTCA-CGTTAATTCAGTTTTCAAA
* *
853097 AATTCATTCT-TTTCCATGAATTTTTATTTTTTTCCTTGAAATTTCTTTTTTTTCAAAATACGGA
62 AATTCATT-TATTTCCATGAATTTTTAATTTTTTCCTTGAAATTCCTTTTTTTT-AAAATAC-GA
* * *
853161 ATTTTTTACTCTATAAATTTTTTCGGAAAGATTTTTCTTGG-TTTTAATTTTTAAAATTCATTAA
124 GTTTTCTACTCTATAAATTTTTTCGG-GAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAA
* *
853225 ATATTATTATGTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATGAATTTTGAA-
188 ATATTATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAAT
* * * * *
853289 TTTTTCCTTGAAATCTCTATTTTTTTGAAATACTAAGTTTT-TTACTCTGTAAATTTTT-TTGCT
253 TTTTTCCTTGAAAT-T-T-TTTTTTCGAAATACGAAGTTTTCTT-CTCCGTAAATTTTTCTCGCG
853352 AAGA-T-T
314 AAGATTCT
* * *
853358 TTTTTTATTTTTAAAATTCATAAAATATTATTATTTATTTCGCGTTAATTCAATTTTCAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCACGTTAATTCAGTTTTCAAAAATT
* * *
853423 CATTTATTTTCATAAATTTTGAATTTTTTCCTTGAAATTCCTTTTTTTTAAATATA-GAGTTTTC
66 CATTTATTTCCATGAATTTTTAATTTTTTCCTTGAAATTCCTTTTTTTTAAA-ATACGAGTTTTC
*
853487 TACTCCT-TAAATTTTTT-GGGAGCATTTTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATT
130 TACT-CTATAAATTTTTTCGGGAG-ATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAATATT
* *
853550 ATTATTTATTTCAAATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTAAATTTTTT
193 ATTATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTT
* * * * **
853615 TCTTGAAATTTACCTTTTTTCAAAATAC--AGATTTTCTACTCCGTAAATTTTT-TCGAGGGGTT
258 CCTTGAAATTT---TTTTTTCGAAATACGAAG-TTTTCTTCTCCGTAAATTTTTCTCGCGAAG--
* *
853677 TTTTTTTTGT
317 -----ATTCT
** ** *
853687 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCATATTAAACCAGTTTTAAAAAATT
1 TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCACGTTAATTCAGTTTTCAAAAATT
* * * * * * *
853752 AATTCATTTTCATGAGTTTTGAATTTTTTCTTTGAAAATCTCTTTTTTTT
66 CATTTATTTCCATGAATTTTTAATTTTTTCCTTGAAATTC-CTTTTTTTT
853802 TTTTCGAGAA
Statistics
Matches: 660, Mismatches: 74, Indels: 66
0.82 0.09 0.08
Matches are distributed among these distances:
318 2 0.00
319 16 0.02
320 123 0.19
321 33 0.05
322 96 0.15
323 5 0.01
325 2 0.00
326 2 0.00
327 74 0.11
328 91 0.14
329 168 0.25
330 17 0.03
331 31 0.05
ACGTcount: A:0.29, C:0.11, G:0.07, T:0.53
Consensus pattern (321 bp):
TTTTTTATTTTTAAAATTCATCAAATATTATTATTTATTTCACGTTAATTCAGTTTTCAAAAATT
CATTTATTTCCATGAATTTTTAATTTTTTCCTTGAAATTCCTTTTTTTTAAAATACGAGTTTTCT
ACTCTATAAATTTTTTCGGGAGATTTTTCTTGGTTTTTAATTTTTAAAATTCATTAAATATTATT
ATTTATTTCATATTAATTCAGTTTTCAAAAATTCATTCATTTCCATAAATTTTGAATTTTTTCCT
TGAAATTTTTTTTTCGAAATACGAAGTTTTCTTCTCCGTAAATTTTTCTCGCGAAGATTCT
Found at i:855650 original size:168 final size:169
Alignment explanation
Indices: 855226--855663 Score: 505
Period size: 171 Copynumber: 2.6 Consensus size: 169
855216 ATGTTTATTA
* *** * *
855226 TTTTTTTAAATCTTTTACATTCCTATGGACATCCGTAGGGGTATAAAAGATTTCGAAAACTTTTC
1 TTTTTTTAAATCTTTTATATTCCTATGGGGGTCCGTAAGGGTATAAAAGATTTCAAAAACTTTTC
* * *
855291 GTATCTTTTTGGACTTCCATTAAGATACGAAATGGTAGTTTTCAAAAATAAATAAATAAATAAAT
66 GTATCTTTTTGGACTTCCATTAAGGTATGAAATGGTAGTTTTC-AAAAT-AACAAAT-AATAAAT
* **
855356 TAAATTAAATTAACACTTTCATAATTGAAATAAATATTAATC
128 TAAATTAAATCAACACTTTCATAATCCAAATAAATATTAATC
* * *
855398 ATTTTTT-ATTCTTTTATATTCCTATGGGGGTCCGT-AGAGATATAAAAGATTTCAAAAACTTTT
1 TTTTTTTAAATCTTTTATATTCCTATGGGGGTCCGTAAG-GGTATAAAAGATTTCAAAAACTTTT
* * * * * *
855461 CGTATTTTTTTGGGCTTCCATTAAGGTTTGAAGTGGTATTTTTC-GAAT-ACAAAT-A-AAATTA
65 CGTATCTTTTTGGACTTCCATTAAGGTATGAAATGGTAGTTTTCAAAATAACAAATAATAAATTA
*
855522 AATTAAATCAACACTTTCATAA-CCAAGATAAATTTTAAATC
130 AATTAAATCAACACTTTCATAATCCAA-ATAAATATT-AATC
* *
855563 TTTTTTTTTAAATCTTTAATATTCCTATGGGGGTCCATAAGGGTATAAAAGATTTCAAAAACTTT
1 --TTTTTTTAAATCTTTTATATTCCTATGGGGGTCCGTAAGGGTATAAAAGATTTCAAAAACTTT
* *
855628 TCGTATCTTTCCT-GAATTCCATTAAGGTATGAAATG
64 TCGTATCTTT-TTGGACTTCCATTAAGGTATGAAATG
855664 AATTTTTGTA
Statistics
Matches: 225, Mismatches: 33, Indels: 20
0.81 0.12 0.07
Matches are distributed among these distances:
163 2 0.01
164 35 0.16
165 5 0.02
167 11 0.05
168 76 0.34
169 6 0.03
170 1 0.00
171 83 0.37
172 6 0.03
ACGTcount: A:0.36, C:0.12, G:0.12, T:0.40
Consensus pattern (169 bp):
TTTTTTTAAATCTTTTATATTCCTATGGGGGTCCGTAAGGGTATAAAAGATTTCAAAAACTTTTC
GTATCTTTTTGGACTTCCATTAAGGTATGAAATGGTAGTTTTCAAAATAACAAATAATAAATTAA
ATTAAATCAACACTTTCATAATCCAAATAAATATTAATC
Found at i:856200 original size:156 final size:155
Alignment explanation
Indices: 855916--856298 Score: 414
Period size: 156 Copynumber: 2.5 Consensus size: 155
855906 ATCCACATCT
* * * * * **
855916 TTTTTAAGTCCTTTAGGGAGACCAGGTACTTTTACGCCGAAGGCAT-TCCTTAAAGGCATTTTCG
1 TTTTTAAGTCTTTTAGGGATATCAGGTACTTTTACGTCGAAGGTATCT-CTTAGGGGCATTTTCG
* * * * *
855980 TAATTTTTTAGAACCAACTCTTAGGTTATCACCTGGTCCGCTTTTATGCCAAAGGTGGGCATTTA
65 TAATTTTTTAAAACCAACTCTTAGGTGATCACCAGGTCCGCTTTTATGCCAAAGGTAGACATTTA
**
856045 GGATAGATTCATTCTCTCTTATCATCC
130 GGATAGATTCA-TCTCTCTTAAAATCC
*
856072 TTTTTAAGTCTTTTAGAGG-TATTAGGTACTTTTACGTCGAAGGTATCTCTTAGGGGCATTTTCG
1 TTTTTAAGTCTTTTAG-GGATATCAGGTACTTTTACGTCGAAGGTATCTCTTAGGGGCATTTTCG
* * * * * *
856136 TAATTTTTTAAAACCAA-TTTCTAGGTGGTTACGAGGTCCG-TTGTTATGCCGAAGGTAGATATT
65 TAATTTTTTAAAACCAACTCT-TAGGTGATCACCAGGTCCGCTT-TTATGCCAAAGGTAGACATT
* * * *
856199 TAGGATAGGTTCATCTTTTTTAAAATCT
128 TAGGATAGATTCATCTCTCTTAAAATCC
* * * * **
856227 TTTTTTAGTCTTTTAGGGATATCGGGTACTTTTATGTCGAAGGTATCCCTTAGGGGCATTTTTAT
1 TTTTTAAGTCTTTTAGGGATATCAGGTACTTTTACGTCGAAGGTATCTCTTAGGGGCATTTTCGT
856292 AATTTTT
66 AATTTTT
856299 CTTGAATTTA
Statistics
Matches: 190, Mismatches: 32, Indels: 11
0.82 0.14 0.05
Matches are distributed among these distances:
154 2 0.01
155 76 0.40
156 109 0.57
157 3 0.02
ACGTcount: A:0.23, C:0.16, G:0.20, T:0.41
Consensus pattern (155 bp):
TTTTTAAGTCTTTTAGGGATATCAGGTACTTTTACGTCGAAGGTATCTCTTAGGGGCATTTTCGT
AATTTTTTAAAACCAACTCTTAGGTGATCACCAGGTCCGCTTTTATGCCAAAGGTAGACATTTAG
GATAGATTCATCTCTCTTAAAATCC
Found at i:857980 original size:21 final size:22
Alignment explanation
Indices: 857942--857983 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
857932 AAAAAAATAA
*
857942 AACTGAAATTTATATTATTTTT
1 AACTGAAATATATATTATTTTT
*
857964 AACT-AAATATATTTTATTTT
1 AACTGAAATATATATTATTTT
857984 ATTCGAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (22 bp):
AACTGAAATATATATTATTTTT
Found at i:861646 original size:13 final size:13
Alignment explanation
Indices: 861624--861681 Score: 53
Period size: 13 Copynumber: 4.0 Consensus size: 13
861614 GGCAGTAGCT
*
861624 TTGTAGCGATACA
1 TTGTATCGATACA
861637 TTGTATCGATACAATA
1 TTGTATCGATAC---A
861653 CTTATGTATCGATACA
1 --T-TGTATCGATACA
861669 TTGTATCGATACA
1 TTGTATCGATACA
861682 ACACTTATGT
Statistics
Matches: 38, Mismatches: 1, Indels: 12
0.75 0.02 0.24
Matches are distributed among these distances:
13 23 0.61
14 1 0.03
16 2 0.05
18 1 0.03
19 11 0.29
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:861662 original size:19 final size:18
Alignment explanation
Indices: 861638--861700 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
861628 AGCGATACAT
861638 TGTATCGATACAATACTTA
1 TGTATCGATACAA-ACTTA
861657 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
861670 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
861689 TGTATCGATACA
1 TGTATCGATACA
861701 TTTACTGTTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.35, C:0.17, G:0.13, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:861667 original size:32 final size:32
Alignment explanation
Indices: 861625--861702 Score: 138
Period size: 32 Copynumber: 2.4 Consensus size: 32
861615 GCAGTAGCTT
* *
861625 TGTAGCGATACATTGTATCGATACAATACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
861657 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
861689 TGTATCGATACATT
1 TGTATCGATACATT
861703 TACTGTTTGT
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:861904 original size:15 final size:15
Alignment explanation
Indices: 861884--861912 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
861874 GCTTAATAAA
861884 AAGTCATGAAAATCT
1 AAGTCATGAAAATCT
861899 AAGTCATGAAAATC
1 AAGTCATGAAAATC
861913 GATACAAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.14, G:0.14, T:0.24
Consensus pattern (15 bp):
AAGTCATGAAAATCT
Found at i:862013 original size:20 final size:20
Alignment explanation
Indices: 861988--862056 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
861978 CTGCCAAGGA
861988 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
862008 AATGTATCGATACATTATTC
1 AATGTATCGATACATTATTC
* *
862028 AATATATCGATATATTATTC
1 AATGTATCGATACATTATTC
862048 AATGTATCG
1 AATGTATCG
862057 CTAAATTGTA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:865683 original size:49 final size:48
Alignment explanation
Indices: 865626--865758 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 48
865616 CATTTAAATA
865626 ATTTTTCATGATCTAGGAATTTTTATATAATTTTACACATATTGAGGTC
1 ATTTTTCATGATCTAGG-ATTTTTATATAATTTTACACATATTGAGGTC
* ** * *
865675 ATTTTTCATGGTCTAAGGATTTTTATGCAATTTTACATATTTTGAGGTC
1 ATTTTTCATGATCT-AGGATTTTTATATAATTTTACACATATTGAGGTC
* *
865724 A-TTTTCTATGATTTAGGGTCTTTTATATAATTTTA
1 ATTTTTC-ATGATCTAGGAT-TTTTATATAATTTTA
865759 GAAATGTTAG
Statistics
Matches: 71, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
48 9 0.13
49 59 0.83
50 3 0.04
ACGTcount: A:0.27, C:0.09, G:0.14, T:0.50
Consensus pattern (48 bp):
ATTTTTCATGATCTAGGATTTTTATATAATTTTACACATATTGAGGTC
Found at i:867615 original size:17 final size:17
Alignment explanation
Indices: 867574--867616 Score: 61
Period size: 17 Copynumber: 2.5 Consensus size: 17
867564 AATGATGTAT
*
867574 TACAATTATTATTAAAA
1 TACAAATATTATTAAAA
867591 TA-ATAATATTATTAAAA
1 TACA-AATATTATTAAAA
867608 TACAAATAT
1 TACAAATAT
867617 ATATGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 1 0.04
17 21 0.91
18 1 0.04
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.40
Consensus pattern (17 bp):
TACAAATATTATTAAAA
Found at i:872970 original size:30 final size:30
Alignment explanation
Indices: 872922--872978 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
872912 GACCTCCTGG
*
872922 TCCACCACCTCCAAGGCCTGGAATGCCAGC
1 TCCACCACCACCAAGGCCTGGAATGCCAGC
* *
872952 TCCACCTCCACCACGGCCTGGAATGCC
1 TCCACCACCACCAAGGCCTGGAATGCC
872979 CCCTCCGCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.46, G:0.19, T:0.14
Consensus pattern (30 bp):
TCCACCACCACCAAGGCCTGGAATGCCAGC
Found at i:874552 original size:3 final size:3
Alignment explanation
Indices: 874544--874582 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
874534 ATTTGATTCG
874544 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
874583 CTCCAAAAAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:875156 original size:11 final size:12
Alignment explanation
Indices: 875129--875158 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
875119 TTAAAACTAT
875129 GATTAAAAATCA
1 GATTAAAAATCA
875141 GATTAAAAATCA
1 GATTAAAAATCA
875153 -ATTAAA
1 GATTAAA
875159 GCAGAATTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 6 0.33
12 12 0.67
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.27
Consensus pattern (12 bp):
GATTAAAAATCA
Found at i:875335 original size:16 final size:16
Alignment explanation
Indices: 875309--875355 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
875299 TATATATTTT
875309 TATTAATTATTAATT-A
1 TATTAA-TATTAATTAA
*
875325 TATTTAATATTATTTAA
1 TA-TTAATATTAATTAA
*
875342 TATTAAAATTAATT
1 TATTAATATTAATT
875356 TTTTAATTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 19 0.73
17 7 0.27
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
TATTAATATTAATTAA
Found at i:875768 original size:22 final size:24
Alignment explanation
Indices: 875725--875771 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
875715 TTGAATCAAA
875725 AATAAAAATATTATAATAATTAAAT
1 AATAAAAATA-TATAATAATTAAAT
*
875750 AATAAAAATA-ATTAT-ATTAAAT
1 AATAAAAATATATAATAATTAAAT
875772 GATATTATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 7 0.33
23 4 0.19
25 10 0.48
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (24 bp):
AATAAAAATATATAATAATTAAAT
Found at i:876768 original size:2 final size:2
Alignment explanation
Indices: 876761--876791 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
876751 AGTCTGCTTA
876761 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
876792 AAATAGAGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:879596 original size:15 final size:16
Alignment explanation
Indices: 879566--879598 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
879556 TAATTTATAA
*
879566 AAATACATTATTATTT
1 AAATAAATTATTATTT
879582 AAATAAATT-TTATTT
1 AAATAAATTATTATTT
879597 AA
1 AA
879599 TATCATTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
AAATAAATTATTATTT
Found at i:880883 original size:21 final size:21
Alignment explanation
Indices: 880853--880904 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
880843 TGTTTTAGGA
* *
880853 AATAACAATAATAAATTAGTT
1 AATAAAAATAATAAATTAATT
880874 -ATCAAAAATAATAAATTAATT
1 AAT-AAAAATAATAAATTAATT
880895 AATAAAAATA
1 AATAAAAATA
880905 TTTATTAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
20 2 0.07
21 23 0.85
22 2 0.07
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (21 bp):
AATAAAAATAATAAATTAATT
Found at i:881549 original size:29 final size:29
Alignment explanation
Indices: 881492--881549 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
881482 TAATATTTTA
*
881492 TATAGTTTATATTTATTTAATTTAAATAT
1 TATAGTTTATATTTATTTAATATAAATAT
* * * *
881521 TATATTTTATATTTTTTTCATATATATAT
1 TATAGTTTATATTTATTTAATATAAATAT
881550 ACGTCAACTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
TATAGTTTATATTTATTTAATATAAATAT
Found at i:884136 original size:14 final size:14
Alignment explanation
Indices: 884117--884144 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
884107 CTTTATACAT
884117 AGTTTTCTTTAGAA
1 AGTTTTCTTTAGAA
884131 AGTTTTCTTTAGAA
1 AGTTTTCTTTAGAA
884145 TCCTAGCACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.14, T:0.50
Consensus pattern (14 bp):
AGTTTTCTTTAGAA
Found at i:886728 original size:32 final size:32
Alignment explanation
Indices: 886692--886759 Score: 91
Period size: 32 Copynumber: 2.1 Consensus size: 32
886682 CCTGTTCCTG
*
886692 CTTTCATCTACAACCCTCCCAAACCCCAAACC
1 CTTTCATCTACAACCCTCCCAAACACCAAACC
* * * *
886724 CTTTCGTCTGCAACCCTCTCAAACACCAAATC
1 CTTTCATCTACAACCCTCCCAAACACCAAACC
886756 CTTT
1 CTTT
886760 TTTCCACCAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.44, G:0.03, T:0.25
Consensus pattern (32 bp):
CTTTCATCTACAACCCTCCCAAACACCAAACC
Found at i:892906 original size:28 final size:28
Alignment explanation
Indices: 892871--892937 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 28
892861 AAAATTGAGA
** *
892871 TTGGAGTATCCCCTCGGAAATAACGGGG
1 TTGGAGTATCCCCGAGGAAATAACGAGG
* *
892899 TTGGAGTATCCCCGATGAAGTAACGAGG
1 TTGGAGTATCCCCGAGGAAATAACGAGG
892927 TTGGAGTATCC
1 TTGGAGTATCC
892938 TCGATTGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.25, C:0.19, G:0.31, T:0.24
Consensus pattern (28 bp):
TTGGAGTATCCCCGAGGAAATAACGAGG
Found at i:892967 original size:107 final size:107
Alignment explanation
Indices: 892781--892990 Score: 275
Period size: 107 Copynumber: 2.0 Consensus size: 107
892771 ATTTTGGAGA
* * * *
892781 AAATAACGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCTTCGGTTGTGGAAAAT
1 AAATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGTTGGAGTATCCTCGATTGTGGAAAAT
*
892846 CGATGATTAGGAAATAAAAT-TGAGATTGGAGTATCCCCTCGG
66 CGATGATTAGGAAATAAAATCAGAG-TTGGAGTATCCCCTCGG
*
892888 AAATAACGGGGTTGGAGTATCCCCGATG-AAGTAACGAGGTTGGAGTATCCTCGATTGT-GAAAA
1 AAATAACGGGGTTGGAGTATCCCC-ATGAAAATAACGAGGTTGGAGTATCCTCGATTGTGGAAAA
* * *
892951 TTGGTAT-TTTTGGAAATAAAATCAGAGTTGGAGTATCCCC
65 -TCG-ATGATTAGGAAATAAAATCAGAGTTGGAGTATCCCC
892991 GATTAAAGGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
106 5 0.06
107 78 0.87
108 7 0.08
ACGTcount: A:0.31, C:0.13, G:0.28, T:0.28
Consensus pattern (107 bp):
AAATAACGGGGTTGGAGTATCCCCATGAAAATAACGAGGTTGGAGTATCCTCGATTGTGGAAAAT
CGATGATTAGGAAATAAAATCAGAGTTGGAGTATCCCCTCGG
Found at i:893267 original size:53 final size:52
Alignment explanation
Indices: 893208--893308 Score: 157
Period size: 52 Copynumber: 1.9 Consensus size: 52
893198 TCGATTGTGA
* * *
893208 AAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCTGATTAAAGG
1 AAAATTGGTG-TTTTGAAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
*
893261 AAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCGATTA
1 AAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAGTATCCCCGATTA
893309 TGAACAATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
52 34 0.77
53 10 0.23
ACGTcount: A:0.34, C:0.10, G:0.26, T:0.31
Consensus pattern (52 bp):
AAAATTGGTGTTTTGAAAATAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
Found at i:893308 original size:52 final size:51
Alignment explanation
Indices: 892925--893307 Score: 260
Period size: 51 Copynumber: 7.4 Consensus size: 51
892915 GAAGTAACGA
* * * * * *
892925 GGTTGGAGTATCCTCGATTG-TGAAAATTGGTATTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTGAGGAAAATTGGT-GTTTTGAAAATAAAACCGG
* * *
892976 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGA
1 GGTTGGAGTATCCCCGATT-GAGGAAAATTGGTGTTTTGAAAATAAAACCGG
* * * *
893028 GGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTT-AGAAATAAAACTGG
1 GGTTGGAGTATCCCCGATTGAGGAAAATTGGTGTTTTGA-AAATAAAACCGG
* *** * * * *
893079 GGTTGGAGTATCCCCGATT-ATGAGAAATCAATATTTTGGAAATAAAGCCAG
1 GGTTGGAGTATCCCCGATTGAGGA-AAATTGGTGTTTTGAAAATAAAACCGG
** * * *
893130 GGTTGGAGTATCCCC--TTGGAGGTAACGGGTTGGAGTATCCCTGATGAAAT--AA-CGA
1 GGTTGGAGTATCCCCGATT-GAGG-AA--AATTGGTGT-T--TTGA--AAATAAAACCGG
* * * * * *
893185 GGTTAGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGAGGAAAATTGGTG-TTTTGAAAATAAAACCGG
* * *
893237 AGTTGGAGTATCCCTGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATT-GAGGAAAATTGGTGTTTTGAAAATAAAACCGG
893289 GGTTGGAGTATCCCCGATT
1 GGTTGGAGTATCCCCGATT
893308 ATGAACAATT
Statistics
Matches: 250, Mismatches: 60, Indels: 43
0.71 0.17 0.12
Matches are distributed among these distances:
49 6 0.02
50 2 0.01
51 101 0.40
52 83 0.33
53 29 0.12
54 2 0.01
55 16 0.06
56 5 0.02
57 2 0.01
58 4 0.02
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTGAGGAAAATTGGTGTTTTGAAAATAAAACCGG
Found at i:896472 original size:40 final size:42
Alignment explanation
Indices: 896425--896524 Score: 125
Period size: 42 Copynumber: 2.4 Consensus size: 42
896415 GTCCCACTTT
* *
896425 TTGAGGACAAAGGAAAAG-AG-AATGAAATAG-GTCTTGCTCC
1 TTGAGGACAAAGGAAAAGAAGAAAAGAAA-AGTGTCATGCTCC
* *
896465 TTGAGGACAAAGGAAAAGAAGAAAAGGAAAGTGTCATGCTTC
1 TTGAGGACAAAGGAAAAGAAGAAAAGAAAAGTGTCATGCTCC
896507 TTGAGGACAAAGTGAAAA
1 TTGAGGACAAAG-GAAAA
896525 AGAGTACGTC
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
40 18 0.35
41 4 0.08
42 25 0.48
43 5 0.10
ACGTcount: A:0.44, C:0.10, G:0.28, T:0.18
Consensus pattern (42 bp):
TTGAGGACAAAGGAAAAGAAGAAAAGAAAAGTGTCATGCTCC
Found at i:896829 original size:61 final size:60
Alignment explanation
Indices: 896614--896926 Score: 295
Period size: 55 Copynumber: 5.5 Consensus size: 60
896604 AAAATAAGGT
* * * ** *
896614 GCATCCTGCTCTTTGAGGACTAAAAAGTGCCACCCACTCATGTGGACTTT-----GAAAG
1 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAG
*
896669 GCGA-CCTGTTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---AAG--AG
1 GC-ATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAG
* * * *
896724 GCGTCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTATGTGGGCTTTGAAAAGAAAAA
1 GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAG-AAAG
* * *
896785 GCATCTTGCTCTTTGAGGACTGGAAA-CTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAG
1 GCATCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-AAG
* *
896846 GCATCCTGTTCTTTAAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAG--A-
1 GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAG
*
896902 -CGTCCTGCTCTTTGAGGACT-AAAGG
1 GCATCCTGCTCTTTGAGGACTGAAAGG
896927 GTGAAAGGAG
Statistics
Matches: 219, Mismatches: 26, Indels: 27
0.81 0.10 0.10
Matches are distributed among these distances:
54 5 0.02
55 100 0.46
56 5 0.02
57 2 0.01
58 3 0.01
60 8 0.04
61 96 0.44
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.27
Consensus pattern (60 bp):
GCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAG
Found at i:896892 original size:122 final size:116
Alignment explanation
Indices: 896678--896899 Score: 304
Period size: 122 Copynumber: 1.9 Consensus size: 116
896668 GGCGACCTGT
* * *
896678 TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGCGTCCTGCTCTTTGAGGA
1 TCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTAAGAGGCATCCTGCTCTTTAAGGA
896743 CTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAGCATCTTGC
66 CTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAGCATCTTGC
*
896794 TCTTTGAGGACTGGAAA-CTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGGCATCCTGTTCT
1 TCTTTGAGGACT-GAAAGCTGCCACCAACTTGTGTGGGCTTT---A--AG-AGGCATCCTGCTCT
* *
896858 TTAAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA
59 TTAAGGACTGGAAA-ATGCCACCAACTTATGTGGGCTTTGAAA
896900 GACGTCCTGC
Statistics
Matches: 92, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
116 35 0.38
117 4 0.04
119 1 0.01
121 6 0.07
122 46 0.50
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.27
Consensus pattern (116 bp):
TCTTTGAGGACTGAAAGCTGCCACCAACTTGTGTGGGCTTTAAGAGGCATCCTGCTCTTTAAGGA
CTGGAAAATGCCACCAACTTATGTGGGCTTTGAAAAGAAAAAGCATCTTGC
Found at i:899069 original size:13 final size:13
Alignment explanation
Indices: 899051--899076 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
899041 CAATTTTTTG
899051 TGTATCGATACAT
1 TGTATCGATACAT
899064 TGTATCGATACAT
1 TGTATCGATACAT
899077 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:899161 original size:20 final size:20
Alignment explanation
Indices: 899136--899208 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
899126 CAACTTTTTT
899136 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
899156 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
899177 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
899197 ATGTATCGATAC
1 ATGTATCGATAC
899209 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:899174 original size:41 final size:41
Alignment explanation
Indices: 899115--899208 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
899105 CTGCCAAGAA
*
899115 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
899156 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
899197 ATGTATCGATAC
1 ATGTATCGATAC
899209 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:899190 original size:21 final size:21
Alignment explanation
Indices: 899115--899190 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
899105 CTGCCAAGAA
* *
899115 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
899136 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
899156 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
899177 ATGTATCGATACAT
1 ATGTATCGATACAT
899191 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:901749 original size:13 final size:13
Alignment explanation
Indices: 901731--901769 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
901721 ATAATCACAC
*
901731 TGTATCGATACAG
1 TGTATCGATACAA
901744 TGTATCGATACAA
1 TGTATCGATACAA
901757 TGTATCGATACAA
1 TGTATCGATACAA
901770 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:901780 original size:20 final size:20
Alignment explanation
Indices: 901755--901833 Score: 70
Period size: 20 Copynumber: 3.7 Consensus size: 20
901745 GTATCGATAC
901755 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
901775 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
*
901800 GATGTATCGATACACAA-AAA
1 AATGTATCGATACA-AAGAAA
*
901820 CATGTATCGATACA
1 AATGTATCGATACA
901834 TTTTGGACAT
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
20 32 0.65
25 16 0.33
26 1 0.02
ACGTcount: A:0.46, C:0.15, G:0.14, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:903868 original size:15 final size:15
Alignment explanation
Indices: 903848--903878 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
903838 ATTTCGTTTG
*
903848 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
903863 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
903878 G
1 G
903879 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:907961 original size:13 final size:13
Alignment explanation
Indices: 907943--907968 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
907933 CAATTTTTTG
907943 TGTATCGATACAT
1 TGTATCGATACAT
907956 TGTATCGATACAT
1 TGTATCGATACAT
907969 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:908053 original size:20 final size:20
Alignment explanation
Indices: 908028--908100 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
908018 CAACTTTTTT
908028 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
****
908048 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACAT-TGCAAC
908069 ATGTATCGATACATTGCAAC
1 ATGTATCGATACATTGCAAC
908089 ATGTATCGATAC
1 ATGTATCGATAC
908101 TTTGAATTGT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGCAAC
Found at i:908066 original size:41 final size:41
Alignment explanation
Indices: 908007--908100 Score: 170
Period size: 41 Copynumber: 2.3 Consensus size: 41
907997 CTGCCAAGAA
*
908007 ATGTATCGATACAACTTTTTTATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
*
908048 ATGTATCGATACATCTTTTTCATGTATCGATACATTGCAAC
1 ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
908089 ATGTATCGATAC
1 ATGTATCGATAC
908101 TTTGAATTGT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (41 bp):
ATGTATCGATACAACTTTTTCATGTATCGATACATTGCAAC
Found at i:908082 original size:21 final size:21
Alignment explanation
Indices: 908007--908082 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
907997 CTGCCAAGAA
* *
908007 ATGTATCGATACAACTTTTTT
1 ATGTATCGATACATCTTTTTC
****
908028 ATGTATCGATACAT-TGCAAC
1 ATGTATCGATACATCTTTTTC
908048 ATGTATCGATACATCTTTTTC
1 ATGTATCGATACATCTTTTTC
908069 ATGTATCGATACAT
1 ATGTATCGATACAT
908083 TGCAACATGT
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 15 0.34
21 29 0.66
ACGTcount: A:0.30, C:0.17, G:0.12, T:0.41
Consensus pattern (21 bp):
ATGTATCGATACATCTTTTTC
Found at i:913155 original size:190 final size:189
Alignment explanation
Indices: 912792--913368 Score: 694
Period size: 190 Copynumber: 3.0 Consensus size: 189
912782 TGATTCAAAT
* ** *
912792 CCAACCTTTTAATATTTATTGCACAACACCATTGTTGCCAGCAGCTTTTCCTGCAAACTAGTGGA
1 CCAACCTTTTACTATTTGCTGCACAACACCATTGTTGCAAGCAGCTTTTCCTGCAAACTAGTGGA
* * *
912857 GGG-AAAAATCTGATCAAACTTGAATCAAATGTAAGGTCCAAATCAAAGAGTGTATCGTCACATT
66 GGGAAAAAATCTGATCAGACTTGAATCAAATATAAGGTCCAAATCAAAGAGTGTATTGTCACATT
* * * * * *
912921 TTCATCATTGTCTGCTCTTCATCATGACAGTCCAGGGATGATAAGCATGCAGTTCACCCAA
131 TTCATCGTTGCCTTCTCTTCATCATCACA--CCAGGGCTGATAAGCATGCAATTCACCCAA
* * * * * * *
912982 CCAACCTTCTACTATTTGCTGCATAACACTATTGTTGCTAGCAACTTTTCCTACAAACTCGTGGA
1 CCAACCTTTTACTATTTGCTGCACAACACCATTGTTGCAAGCAGCTTTTCCTGCAAACTAGTGGA
* * *
913047 GGGAAAAAAATCTAATCAGACTTGAATCAAATATAAGGTCCAACTCAAA-ATATGTATTGGT-AC
66 GGG-AAAAAATCTGATCAGACTTGAATCAAATATAAGGTCCAAATCAAAGA-GTGTATT-GTCAC
* * * * *
913110 ATTTTCATCGTTACCTTCTTTTCATCCTTACACTAGGGCTGATAAGCATGCAATTCACCCAA
128 ATTTTCATCGTTGCCTTCTCTTCATCATCACACCAGGGCTGATAAGCATGCAATTCACCCAA
** * * * * *
913172 CCAACCTTTTGTTATCTGCTGCACAATACCATTGCTACAAGCAGCTTTTCTTGCAAACTAGTGGA
1 CCAACCTTTTACTATTTGCTGCACAACACCATTGTTGCAAGCAGCTTTTCCTGCAAACTAGTGGA
** * *
913237 GGGAAAAGTTC-GATTAGACTTGAATCAAATATAAAGTCCAAATCAAAGAGTGTATTGTCACATT
66 GGGAAAAAATCTGATCAGACTTGAATCAAATATAAGGTCCAAATCAAAGAGTGTATTGTCACATT
* * * *
913301 TTCATTGTTGCTTTCTCTTCATCATCACACCAAGGCTGATAAGCATGCAACTCACCCAA
131 TTCATCGTTGCCTTCTCTTCATCATCACACCAGGGCTGATAAGCATGCAATTCACCCAA
913360 CCAACCTTT
1 CCAACCTTT
913369 ACTGGGCATT
Statistics
Matches: 325, Mismatches: 56, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
187 2 0.01
188 102 0.31
189 7 0.02
190 139 0.43
191 1 0.00
192 72 0.22
193 2 0.01
ACGTcount: A:0.32, C:0.23, G:0.15, T:0.30
Consensus pattern (189 bp):
CCAACCTTTTACTATTTGCTGCACAACACCATTGTTGCAAGCAGCTTTTCCTGCAAACTAGTGGA
GGGAAAAAATCTGATCAGACTTGAATCAAATATAAGGTCCAAATCAAAGAGTGTATTGTCACATT
TTCATCGTTGCCTTCTCTTCATCATCACACCAGGGCTGATAAGCATGCAATTCACCCAA
Found at i:915615 original size:97 final size:97
Alignment explanation
Indices: 915487--915698 Score: 232
Period size: 99 Copynumber: 2.2 Consensus size: 97
915477 TTTATCGGGA
* * * *
915487 ATACTTTAACCTTATTCTTTTGAGAGGATACTCCAACTCCA-TTTTTAAACTCGTCAAGATT-TA
1 ATACTCTAACCCTATTATTTTGAGAGAATACTCCAAC-CCATTTTTTAAACTCGTCAA-ATTCTA
915550 AATATTATATTTGCTTAAATTATCATCATTAGGG
64 AATATTATATTTGCTTAAATTATCATCATTAGGG
* * *
915584 ATACTCTAACCCTATTATTTTGAG-GAAATACTCCAACCTATTTTTTTTAAACTTGTCAATTTCT
1 ATACTCTAACCCTATTATTTTGAGAG-AATACTCCAACCCA--TTTTTTAAACTCGTCAAATTCT
* * * *
915648 AAATTTTATTTTTGCTTAAATTGTCATCGTTAGGG
63 AAATATTATATTTGCTTAAATTATCATCATTAGGG
* * *
915683 ACATTCCAACCCTATT
1 ATACTCTAACCCTATT
915699 TCTCTGACGG
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
96 3 0.03
97 31 0.32
98 2 0.02
99 60 0.62
ACGTcount: A:0.30, C:0.18, G:0.09, T:0.42
Consensus pattern (97 bp):
ATACTCTAACCCTATTATTTTGAGAGAATACTCCAACCCATTTTTTAAACTCGTCAAATTCTAAA
TATTATATTTGCTTAAATTATCATCATTAGGG
Found at i:917716 original size:79 final size:79
Alignment explanation
Indices: 917632--917777 Score: 186
Period size: 79 Copynumber: 1.8 Consensus size: 79
917622 GAATGTATCT
* * * ** * * *
917632 TTTAAGGTTATTTTAGTAATTTCTT-AATTTAAATTGAATCCTTAGGAGTATGTTGGCATTTTCA
1 TTTAAGGTCATTTCAATAA-TTCTTGAATTTAAACCGAATCCTTAGGAGCATATTGACATTTTCA
917696 TATTGATGTATAATC
65 TATTGATGTATAATC
* *
917711 TTTAAGGTCATTTCAATAATTCTTGCATTTAAACCGAGTCCTTAGGAGCATATTGACATTTTCAT
1 TTTAAGGTCATTTCAATAATTCTTGAATTTAAACCGAATCCTTAGGAGCATATTGACATTTTCAT
917776 AT
66 AT
917778 CAATGCATGG
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
78 5 0.09
79 51 0.91
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (79 bp):
TTTAAGGTCATTTCAATAATTCTTGAATTTAAACCGAATCCTTAGGAGCATATTGACATTTTCAT
ATTGATGTATAATC
Found at i:922717 original size:47 final size:47
Alignment explanation
Indices: 922665--922766 Score: 177
Period size: 47 Copynumber: 2.2 Consensus size: 47
922655 ATTAGCCAAG
*
922665 GTTGAAAATGGCCCAAAATGCTTAATTTTACCCAGATGTATCGATAC
1 GTTGAAAATGGCCCAAAATGCTTAATTTTAACCAGATGTATCGATAC
*
922712 GTTGAAAATGGCCTAAAATGCTTAATTTTAACCAGATGTATCGATAC
1 GTTGAAAATGGCCCAAAATGCTTAATTTTAACCAGATGTATCGATAC
*
922759 ATTGAAAA
1 GTTGAAAA
922767 ATGTATCGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (47 bp):
GTTGAAAATGGCCCAAAATGCTTAATTTTAACCAGATGTATCGATAC
Found at i:922772 original size:20 final size:20
Alignment explanation
Indices: 922747--922831 Score: 71
Period size: 20 Copynumber: 3.7 Consensus size: 20
922737 TTTTAACCAG
922747 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
922767 ATGTATCGATACATCTGGGTAAAAAGATAAA
1 ATGTATCGATACAT-T--G-----A-A-A-A
922798 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
922818 ATGTATCGATACAT
1 ATGTATCGATACAT
922832 CTAAGTAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 22
0.71 0.00 0.29
Matches are distributed among these distances:
20 29 0.54
21 2 0.04
22 1 0.02
23 2 0.04
28 2 0.04
29 1 0.02
30 2 0.04
31 15 0.28
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:925420 original size:296 final size:296
Alignment explanation
Indices: 924881--927551 Score: 4602
Period size: 296 Copynumber: 9.0 Consensus size: 296
924871 GTCAAAATGT
* *
924881 CATGTTCATGCAAACCATCTTTATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
* *
924946 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACAAACATGCAGTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* * * * * *
925011 TTTGCATTTTCATCGTAACCTATGCCATTAAACATGTTACAAAGTTTTTAGCACGTTAGTTATTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* *
925076 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATATCATTCATCTAGCTAATATGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* *
925141 ATGCATTTTGCTTGTCATCTCTTTGTGTGTTTGCTG
261 ATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
* * *
925177 CATGTTCATGCAAATCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGAAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
*
925242 TCTCCATGCTTCATTCATGCATGAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* *
925307 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTTAGCACATTAGTTGTCG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
*
925372 TTAGAACATGCTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * *
925437 ATGCATTTTACTTGTCATCTCCTTGTGTGTTTGTTG
261 ATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
* * *
925473 CATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCCATGTAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
*
925538 TCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* *
925603 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* * *
925668 TTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * *
925733 ATACATTTTGCTTGTCATCTCCTTATGTGTTTATTG
261 ATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
*
925769 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
925834 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
*
925899 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
925964 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
*
926029 ATACATTTTTCTTGTCATCTCCTTT-TGTGTTTGTTG
261 ATACATTTTGCTTGTCATCT-CTTTGTGTGTTTGTTG
*
926065 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTC-TTTTTACCATG-TCCCATGCA
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCT-CCATGCA
926128 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
65 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
*
926193 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCAGATTAGTTGTT
130 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTT
926258 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
195 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
* *
926323 CATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTG
260 CATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
* *
926360 CATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
*
926425 TCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* *
926490 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* * *
926555 TTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* *
926620 ATACATTTTGCTTGTCATCT-TCTTATGTGTTTATTG
261 ATACATTTTGCTTGTCATCTCT-TTGTGTGTTTGTTG
*
926656 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
926721 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
*
926786 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
926851 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
*
926916 ATACATTTTTCTTGTCATCTCCTTT-TGTGTTTGTTG
261 ATACATTTTGCTTGTCATCT-CTTTGTGTGTTTGTTG
*
926952 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTC-TTTTTACCATG-TCCCATGCA
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCT-CCATGCA
927015 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
65 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
*
927080 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCAGATTAGTTGTT
130 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTT
927145 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
195 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
*
927210 CATACATTTTGCTTGTCATCT-TCTTATGTGTTTGTTG
260 CATACATTTTGCTTGTCATCTCT-TTGTGTGTTTGTTG
*
927247 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTTCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
* *
927312 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTGCCATAAGCACGCACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
*
927377 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCATATTAGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* * *
927442 TTAGAACATGTTTATATCATTTTCCTTATCATGATCTTAATGTCATTCATCTAGCTAATCTATTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * *
927507 ATGCATTTTGCTTGTCATCGCTTTGTGTGTTTGTCG
261 ATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
*
927543 CATTTTCAT
1 CATGTTCAT
927552 TTTCAAAATA
Statistics
Matches: 2266, Mismatches: 95, Indels: 28
0.95 0.04 0.01
Matches are distributed among these distances:
293 1 0.00
294 7 0.00
295 566 0.25
296 1683 0.74
297 8 0.00
298 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.41
Consensus pattern (296 bp):
CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
ATACATTTTGCTTGTCATCTCTTTGTGTGTTTGTTG
Found at i:926422 original size:591 final size:592
Alignment explanation
Indices: 924881--927551 Score: 4657
Period size: 591 Copynumber: 4.5 Consensus size: 592
924871 GTCAAAATGT
* *
924881 CATGTTCATGCAAACCATCTTTATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
* *
924946 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACAAACATGCAGTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* * * * * *
925011 TTTGCATTTTCATCGTAACCTATGCCATTAAACATGTTACAAAGTTTTTAGCACGTTAGTTATTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* *
925076 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATATCATTCATCTAGCTAATATGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * *
925141 ATGCATTTTGCTTGTCATCTCTTTGTGTGTTTGCTGCATGTTCATGCAAATCATCTTGATAGCCT
261 ATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCT
* *
925206 TTGTTTGTGCATTCTTTTTTACCATGCTCCATGAATTCTCCATGCTTCATTCATGCATGAATCCC
326 TTGTTTGTGCATTCTTTTTTACCATGCTCCATGCATTCTCCATGCTTCATTCATGCATAAATCCC
925271 TAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATT
391 TAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATT
* *
925336 AAACATGTCACAAAATTTTTAGCACATTAGTTGTCGTTAGAACATGCTCATATCATTTTCCTTAT
456 AAACATGTCACAAAATTTTTAGCACATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTAT
* * *
925401 CATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTACTTGTCATCTCCTTGTGTG
521 CATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTCCTTATGTG
925466 TTTGTTG
586 TTTGTTG
* * *
925473 CATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCCATGTAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
*
925538 TCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* *
925603 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* * *
925668 TTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * * * *
925733 ATACATTTTGCTTGTCATCTCCTTATGTGTTTATTGCATGCTCATGTAAACCATCTTGATAGCCT
261 ATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCT
925798 TTGTTTGTGCATTCTTTTTTACCATGCTCCATGCATTCTCCATGCTTCATTCATGCATAAATCCC
326 TTGTTTGTGCATTCTTTTTTACCATGCTCCATGCATTCTCCATGCTTCATTCATGCATAAATCCC
925863 TAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATT
391 TAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATT
* *
925928 AAACATGTCACAAATTTTTTAGCACATTGGTTGTTGTTAGAACATGTTCATATCATTTTCCTTAT
456 AAACATGTCACAAAATTTTTAGCACATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTAT
* *
925993 CATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTTCTTGTCATCTCCTTTTGTG
521 CATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTCCTTATGTG
926058 TTTGTTG
586 TTTGTTG
*
926065 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTC-TTTTTACCATG-TCCCATGCA
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCT-CCATGCA
926128 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
65 TTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTT
*
926193 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCAGATTAGTTGTT
130 ACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTT
926258 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
195 GTTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTT
926323 CATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCC
260 CATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCC
* *
926388 TTTGTTTGTGCATTCTTTTTTGCCATGCTCCATGCATTCTCCATGCTTCATTCATACATAAATCC
325 TTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCATTCTCCATGCTTCATTCATGCATAAATCC
926453 CTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCAT
390 CTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCAT
* *
926518 TAAACATGTCACAAAATTTTAAGCACATTAGTTGTTGTTAGAACATCTTCATATCATTTTCCTTA
455 TAAACATGTCACAAAATTTTTAGCACATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTA
* * *
926583 CCATGATCTTAATCTCATTCATCTAGCCAATCTGTTCATACATTTTGCTTGTCATCTTCTTATGT
520 TCATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTCCTTATGT
*
926648 GTTTATTG
585 GTTTGTTG
*
926656 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
926721 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
*
926786 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
926851 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * * * *
926916 ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
261 ATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCT
926981 TTGTTTGTGCATTC-TTTTTACCATG-TCCCATGCATTCTCCATGCTTCATTCATGCATAAATCC
326 TTGTTTGTGCATTCTTTTTTACCATGCT-CCATGCATTCTCCATGCTTCATTCATGCATAAATCC
927044 CTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCAT
390 CTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCAT
* *
927109 TAAACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTA
455 TAAACATGTCACAAAATTTTTAGCACATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTA
*
927174 TCATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTTCTTATGT
520 TCATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTCCTTATGT
927239 GTTTGTTG
585 GTTTGTTG
*
927247 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTTCATGCAT
1 CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
* *
927312 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTGCCATAAGCACGCACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
*
927377 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCATATTAGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
* * *
927442 TTAGAACATGTTTATATCATTTTCCTTATCATGATCTTAATGTCATTCATCTAGCTAATCTATTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * * *
927507 ATGCATTTTGCTTGTCATCGCTTTGTGTGTTTGTCGCATTTTCAT
261 ATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCAT
927552 TTTCAAAATA
Statistics
Matches: 1979, Mismatches: 96, Indels: 9
0.95 0.05 0.00
Matches are distributed among these distances:
590 2 0.00
591 1092 0.55
592 884 0.45
593 1 0.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.41
Consensus pattern (592 bp):
CATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTAGTTGTTG
TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
ATGCATTTTGCTTGTCATCTCCTTGTGTGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCT
TTGTTTGTGCATTCTTTTTTACCATGCTCCATGCATTCTCCATGCTTCATTCATGCATAAATCCC
TAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATT
AAACATGTCACAAAATTTTTAGCACATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTAT
CATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTCCTTATGTG
TTTGTTG
Found at i:926607 original size:887 final size:887
Alignment explanation
Indices: 924881--927525 Score: 4817
Period size: 887 Copynumber: 3.0 Consensus size: 887
924871 GTCAAAATGT
* * *
924881 CATGTTCATGCAAACCATCTTTATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
* *
924946 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACAAACATGCAGTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
* * * * * * *
925011 TTTGCATTTTCATCGTAACCTATGCCATTAAACATGTTACAAAGTTTTTAGCACGTTAGTTATTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
* *
925076 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATATCATTCATCTAGCTAATATGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
* * * * * *
925141 ATGCATTTTGCTTGTCATCT-CTTTGTGTGTTTGCTGCATGTTCATGCAAATCATCTTGATAGCC
261 ATACATTTTTCTTGTCATCTCCTTT-TGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCC
* *
925205 TTTGTTTGTGCATTCTTTTTTACCATG-CTCCATGAATTCTCCATGCTTCATTCATGCATGAATC
325 TTTGTTTGTGCATTC-TTTTTACCATGTC-CCATGCATTCTCCATGCTTCATTCATGCATAAATC
925269 CCTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCA
388 CCTAGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCA
* * * *
925334 TTAAACATGTCACAAAATTTTTAGCACATTAGTTGTCGTTAGAACATGCTCATATCATTTTCCTT
453 TTAAACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTT
*
925399 ATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTACTTGTCATCTCCTTGTG
518 ATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTGCTTGTCATCTCCTTGTG
925464 TGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGC
583 TGTTTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGC
*
925529 TCCATGTATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACAC
648 TCCATGCATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACAC
925594 ATGCACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACAT
713 ATGCACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACAT
925659 TAGTTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCC
778 TAGTTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCC
925724 AATCTGTTCATACATTTTGCTTGTCATCTCCTTATGTGTTTATTG
843 AATCTGTTCATACATTTTGCTTGTCATCTCCTTATGTGTTTATTG
925769 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
925834 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
925899 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
925964 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
926029 ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
261 ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
926094 TTGTTTGTGCATTCTTTTTACCATGTCCCATGCATTCTCCATGCTTCATTCATGCATAAATCCCT
326 TTGTTTGTGCATTCTTTTTACCATGTCCCATGCATTCTCCATGCTTCATTCATGCATAAATCCCT
926159 AGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATTA
391 AGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATTA
926224 AACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTATC
456 AACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTATC
926289 ATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTGCTTGTCATCTCCTTGTGTGT
521 ATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTGCTTGTCATCTCCTTGTGTGT
926354 TTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCC
586 TTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCC
926419 ATGCATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATG
651 ATGCATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATG
926484 CACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAG
716 CACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAG
926549 TTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAAT
781 TTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAAT
*
926614 CTGTTCATACATTTTGCTTGTCATCTTCTTATGTGTTTATTG
846 CTGTTCATACATTTTGCTTGTCATCTCCTTATGTGTTTATTG
926656 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
1 CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
926721 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
66 TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
926786 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
131 CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
926851 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
196 TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
926916 ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
261 ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
926981 TTGTTTGTGCATTCTTTTTACCATGTCCCATGCATTCTCCATGCTTCATTCATGCATAAATCCCT
326 TTGTTTGTGCATTCTTTTTACCATGTCCCATGCATTCTCCATGCTTCATTCATGCATAAATCCCT
927046 AGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATTA
391 AGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATTA
927111 AACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTATC
456 AACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTATC
* * *
927176 ATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATACATTTTGCTTGTCATCTTCTTATGTGT
521 ATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTGCTTGTCATCTCCTTGTGTGT
* * *
927241 TTGTTGCATGTTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTTC
586 TTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCC
* * *
927306 ATGCATTCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTGCCATAAGCACGCACATG
651 ATGCATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATG
* * *
927371 CACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCATATTAG
716 CACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAG
* * * * *
927436 TTGTTGTTAGAACATGTTTATATCATTTTCCTTATCATGATCTTAATGTCATTCATCTAGCTAAT
781 TTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAAT
* *
927501 CTATTCATGCATTTTGCTTGTCATC
846 CTGTTCATACATTTTGCTTGTCATC
927526 GCTTTGTGTG
Statistics
Matches: 1707, Mismatches: 48, Indels: 5
0.97 0.03 0.00
Matches are distributed among these distances:
887 1388 0.81
888 315 0.18
889 4 0.00
ACGTcount: A:0.25, C:0.22, G:0.11, T:0.41
Consensus pattern (887 bp):
CATGCTCATGTAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTACCATGCTCCATGCAT
TCTCCATGCTTCATTCATGCATAAATCCCTAGTTTAATATTACCATAAGCACACACATGCACTTA
CTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAATTTTTTAGCACATTGGTTGTTG
TTAGAACATGTTCATATCATTTTCCTTATCATGATCTTAATCTCATTCATCTAGCTAATCTGTTC
ATACATTTTTCTTGTCATCTCCTTTTGTGTTTGTTGCATGCTCATGTAAACCATCTTGATAGCCT
TTGTTTGTGCATTCTTTTTACCATGTCCCATGCATTCTCCATGCTTCATTCATGCATAAATCCCT
AGTTTAATATTACCATAAGCACACACATGCACTTACTTGCATTTTCATCATAACCTATGCCATTA
AACATGTCACAAATTTTTTAGCAGATTAGTTGTTGTTAGAACATGTTCATATCATTTTCCTTATC
ATGATCTTAATCTCATTCATCTAGCTAATCTGTTCATGCATTTTGCTTGTCATCTCCTTGTGTGT
TTGTTGCATGTTCATGCAAACCATCTTGATAGCCTTTGTTTGTGCATTCTTTTTTGCCATGCTCC
ATGCATTCTCCATGCTTCATTCATACATAAATCCCTAGTTTAATATTACCATAAGCACACACATG
CACTTACTTGCATTTTCATCATAACCTATGCCATTAAACATGTCACAAAATTTTAAGCACATTAG
TTGTTGTTAGAACATCTTCATATCATTTTCCTTACCATGATCTTAATCTCATTCATCTAGCCAAT
CTGTTCATACATTTTGCTTGTCATCTCCTTATGTGTTTATTG
Found at i:932961 original size:21 final size:21
Alignment explanation
Indices: 932926--932991 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
932916 ATCTTTTATG
*
932926 GAAAG-ATGTATTTTTTGGAT
1 GAAAGAATGTAATTTTTGGAT
*
932946 GAAAGAATGTAATTTTTAGAT
1 GAAAGAATGTAATTTTTGGAT
* * *
932967 -AGAATAATGTACTTATTGGAT
1 GA-AAGAATGTAATTTTTGGAT
932988 GAAA
1 GAAA
932992 AGATGCATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
20 6 0.16
21 30 0.81
22 1 0.03
ACGTcount: A:0.39, C:0.02, G:0.21, T:0.38
Consensus pattern (21 bp):
GAAAGAATGTAATTTTTGGAT
Found at i:936988 original size:17 final size:17
Alignment explanation
Indices: 936966--937009 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
936956 AATTTTTAAA
936966 ATTTATCAAATAAAATT
1 ATTTATCAAATAAAATT
* *
936983 ATTTATTCATATTAAATT
1 ATTTA-TCAAATAAAATT
*
937001 ATTTTTCAA
1 ATTTATCAA
937010 TAATTCATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTATCAAATAAAATT
Found at i:947059 original size:16 final size:15
Alignment explanation
Indices: 947033--947063 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
947023 GATGAAAAGA
947033 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
947048 ATTTTGTTATTATTTT
1 ATTTT-TTATTATTTT
947064 TTATTATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:948038 original size:31 final size:31
Alignment explanation
Indices: 948002--948099 Score: 144
Period size: 31 Copynumber: 3.2 Consensus size: 31
947992 TTCATGAAGT
948002 TGGAAGAGGCTCGAGCTGCTGCTATGGAAAC
1 TGGAAGAGGCTCGAGCTGCTGCTATGGAAAC
*
948033 TGGAAGAGGCTCGAGCTGCTACTATGGAAAC
1 TGGAAGAGGCTCGAGCTGCTGCTATGGAAAC
* * *
948064 TGGAAGAGGCTCAAGCTGTTGGC-ATGGAAGC
1 TGGAAGAGGCTCGAGCTGCT-GCTATGGAAAC
948095 TGGAA
1 TGGAA
948100 AAAACTCAAG
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
31 60 0.98
32 1 0.02
ACGTcount: A:0.28, C:0.17, G:0.36, T:0.19
Consensus pattern (31 bp):
TGGAAGAGGCTCGAGCTGCTGCTATGGAAAC
Found at i:948791 original size:19 final size:20
Alignment explanation
Indices: 948767--948811 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
948757 GCATTTCATG
*
948767 ATTTTTTTTATT-TCTATTA
1 ATTTTTATTATTATCTATTA
* *
948786 ATTTTTATTATTATTTTTTA
1 ATTTTTATTATTATCTATTA
948806 ATTTTT
1 ATTTTT
948812 GATTTCTACT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
19 11 0.50
20 11 0.50
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (20 bp):
ATTTTTATTATTATCTATTA
Found at i:949363 original size:42 final size:42
Alignment explanation
Indices: 949317--950191 Score: 368
Period size: 42 Copynumber: 20.6 Consensus size: 42
949307 GGCAGTCTTC
* * * *
949317 AGGGTCAAAGACGATATGCAGACTGAGGGTAGAAAAGTCTCG
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * *
949359 AGGGTC-AAGACCGATAAGCAGGCTAAAGGTAGAAAAGTCTCT
1 AGGGTCAAAGA-CGACAGGCAGACTAAGGGTAGAAAAGTCTCT
*
949401 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCT
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * * *
949443 AGGGTCAAAGCCAACAGGTAAACTAAGGGTAGGAAAGTCTCT
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * *
949485 AGGGTCAAAGCCGACAGGCAAACTAAGGGCAGAAAAGTCTCC
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * * *
949527 AAGGTCAAA-ACCGACAAGCAGACTAAGGGAAGGAAAGTCTTT
1 AGGGTCAAAGA-CGACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * *
949569 AGGGTCAAAGTCGACAGGCAGACTGAGGGAAGAAAAGTCTCC
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
** * * * * *
949611 AAAGTCAAAGCCGACAGGTAGACTTTA-GAT-GAGATAGTCTCT
1 AGGGTCAAAGACGACAGGCAGAC-TAAGGGTAGA-AAAGTCTCT
* * * * * *
949653 AAGGTCAAAG-CTGATAGGTAAACTGAGGGTAGAAAAATCTCT
1 AGGGTCAAAGAC-GACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * * * * *
949695 AGGGTCAAAGCCGACAGGTAGATTTTA-GAT-GAAGTAGTCTCC
1 AGGGTCAAAGACGACAGGCAGA-CTAAGGGTAGAA-AAGTCTCT
* * * *
949737 AGGGTCAAAG-CTGACAAGTAGACTGAGGGTAGAAAAGTCTCC
1 AGGGTCAAAGAC-GACAGGCAGACTAAGGGTAGAAAAGTCTCT
* * * * * ** *
949779 AGGGTCTCTAGAGTTAAAGCCAATAGGCAGACTTTA-GAT-GAGGCAGTCTCC
1 AGGG--TC-------AAAGACGACAGGCAGAC-TAAGGGTAGA-AAAGTCTCT
* * * *
949830 AGGGTCAAAGCCGACAAGTAAACTAAGGGTAGAAAAGTCTTCT
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTC-TCT
* * * * * **
949873 A-GGTTAAAG-CTGACAGTCAGCCTTTA-GAT-GAGGCAGTCTCT
1 AGGGTCAAAGAC-GACAGGCAGAC-TAAGGGTAGA-AAAGTCTCT
** * * * *
949914 ATAGTCAAAGTCGACTA-GCAGACTGAGGGTAAAAAAGTCTCC
1 AGGGTCAAAGACGAC-AGGCAGACTAAGGGTAGAAAAGTCTCT
* * * * * ** *
949956 AAGGTTAAAGCCGACAGGCAGACTTTA-GAT-GAGGTAGTCTCC
1 AGGGTCAAAGACGACAGGCAGAC-TAAGGGTAGA-AAAGTCTCT
* * * * * * *
949998 AAGGTCACAGCCAACAGGCAGACTGAAGGATAGGAAAGTCTCC
1 AGGGTCAAAGACGACAGGCAGACT-AAGGGTAGAAAAGTCTCT
* *
950041 AGGGTCAAAGTCGACAGGCAGACTGAAGGGTAGGAAAGTCTCT
1 AGGGTCAAAGACGACAGGCAGACT-AAGGGTAGAAAAGTCTCT
* * * **
950084 AGGGTCAAAGCCGACAGGCAGACTTTA-GATA-AGGTAGTCTCT
1 AGGGTCAAAGACGACAGGCAGAC-TAAGGGTAGA-AAAGTCTCT
* * ** * * * *
950126 AAGGTCAAAGCCGATTGGCAGATTGAGGATAGAAAAGTCTCC
1 AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
*
950168 AAGGTCAAA-ATCGACAGGCAGACT
1 AGGGTCAAAGA-CGACAGGCAGACT
950192 TTAAATGAGG
Statistics
Matches: 642, Mismatches: 142, Indels: 98
0.73 0.16 0.11
Matches are distributed among these distances:
41 31 0.05
42 480 0.75
43 96 0.15
44 4 0.01
49 2 0.00
50 2 0.00
51 24 0.04
52 3 0.00
ACGTcount: A:0.36, C:0.18, G:0.28, T:0.18
Consensus pattern (42 bp):
AGGGTCAAAGACGACAGGCAGACTAAGGGTAGAAAAGTCTCT
Found at i:949430 original size:84 final size:83
Alignment explanation
Indices: 949317--950107 Score: 431
Period size: 84 Copynumber: 9.3 Consensus size: 83
949307 GGCAGTCTTC
* * * * * * *
949317 AGGGTCAAAGACGATATGCAGACTGAGGGTAGAAAAGTCTCGAGGGTCAAGACCGATAAGCAGGC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAA-ACCGACAAGCAGAC
* *
949382 TAAAGGTAGAAAAGTCTCT
65 TAAGGGTAGGAAAGTCTCT
* * * * *
949401 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCAACAGGTAAAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAAA-CCGACAAGCAGAC
949466 TAAGGGTAGGAAAGTCTCT
65 TAAGGGTAGGAAAGTCTCT
* * *
949485 AGGGTCAAAGCCGACAGGCAAACTAAGGGCAGAAAAGTCTCCAAGGTCAAAACCGACAAGCAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTC-AAACCGACAAGCAGAC
* *
949550 TAAGGGAAGGAAAGTCTTT
65 TAAGGGTAGGAAAGTCTCT
* * * ** * *
949569 AGGGTCAAAGTCGACAGGCAGACTGAGGGAAGAAAAGTCTCCAAAGTCAAAGCCGACAGGTAGAC
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAAA-CCGACAAGCAGAC
* * *
949634 TTTA-GAT-GAGATAGTCTCT
65 -TAAGGGTAG-GAAAGTCTCT
* * * * * * * * * *
949653 AAGGTCAAAGCTGATAGGTAAACTGAGGGTAGAAAAATCTCTAGGGTCAAAGCCGACAGGTAGAT
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAAA-CCGACAAGCAGA-
* * * *
949718 TTTA--G-ATGAAGTAGTCTCC
64 CTAAGGGTAGGAA--AGTCTCT
* * * * *
949737 AGGGTCAAAGCTGACAAGTAGACTGAGGGTAGAAAAGTCTCCAGGGTCTCTAGAGTTAAAGCCAA
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGG--TC-------AAA-CCGA
* * * * * *
949802 TAGGCAGACTTTA-GATGAGG-CAGTCTCC
56 CAAGCAGAC-TAAGGGT-AGGAAAGTCTCT
* * * * * *
949830 AGGGTCAAAGCCGACAAGTAAACTAAGGGTAGAAAAGTCTTCTA-GGTTAAAGCTGAC-AGTCAG
1 AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTC-TCCAGGGTCAAA-CCGACAAG-CAG
* * * *
949893 CCTTTA-GATGAGG-CAGTCTCT
63 AC-TAAGGGT-AGGAAAGTCTCT
** * * * * * *
949914 ATAGTCAAAGTCGACTA-GCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAGGCAGA
1 AGGGTCAAAGCCGAC-AGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAAA-CCGACAAGCAGA
* * * *
949978 CTTTA-GATGAGG-TAGTCTCC
64 C-TAAGGGT-AGGAAAGTCTCT
* * * * * * *
949998 AAGGTCACAGCCAACAGGCAGACTGAAGGATAGGAAAGTCTCCAGGGTCAAAGTCGACAGGCAGA
1 AGGGTCAAAGCCGACAGGCAGACT-AAGGGTAGAAAAGTCTCCAGGGTCAAA-CCGACAAGCAGA
950063 CTGAAGGGTAGGAAAGTCTCT
64 CT-AAGGGTAGGAAAGTCTCT
950084 AGGGTCAAAGCCGACAGGCAGACT
1 AGGGTCAAAGCCGACAGGCAGACT
950108 TTAGATAAGG
Statistics
Matches: 568, Mismatches: 107, Indels: 62
0.77 0.15 0.08
Matches are distributed among these distances:
82 2 0.00
83 10 0.02
84 413 0.73
85 45 0.08
86 31 0.05
91 1 0.00
93 61 0.11
94 3 0.01
96 2 0.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (83 bp):
AGGGTCAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCCAGGGTCAAACCGACAAGCAGACT
AAGGGTAGGAAAGTCTCT
Found at i:949519 original size:126 final size:125
Alignment explanation
Indices: 949342--950101 Score: 437
Period size: 126 Copynumber: 5.9 Consensus size: 125
949332 ATGCAGACTG
* * * * * *
949342 AGGGTAGAAAAGTCTCGAGGGTC-AAGACCGATAAGCAGGCTAAAGGTAGAAAAGTCTCTAGGGT
1 AGGGTAGAAAAGTCTCCAGGGTCAAAG-CCGACAGGCAGACT-AAGGGAGAAAAGTCTCTAAGGT
*
949406 CAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCAACAGGTAAACTA
64 CAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGTAAACTA
* * * *
949468 AGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAAACTAAGGGCAGAAAAGTCTCCAAGGTC
1 AGGGTAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-AGAAAAGTCTCTAAGGTC
* * * * * * * * *
949533 AAAACCGACAAGCAGACTAAGGGAAGGAAAGTCTTTAGGGTCAAAGTCGACAGGCAGACTG
65 AAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGTAAACTA
* ** * * * *
949594 AGGGAAGAAAAGTCTCCAAAGTCAAAGCCGACAGGTAGACTTTAGATGAG-ATAGTCTCTAAGGT
1 AGGGTAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGAC-TAAG-GGAGAAAAGTCTCTAAGGT
* * * * * * ** *
949658 CAAAGCTGATAGGTAAACTGAGGGTAGAAAAATCTCTAGGGTCAAAGCCGACAGGTAGATTTT
64 CAAAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGTA-AACTA
* * * * * *
949721 A-GAT-GAAGTAGTCTCCAGGGTCAAAGCTGACAAGTAGACTGAGGGTAGAAAAGTCTCCAGGGT
1 AGGGTAGAA-AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGG-AGAAAAG--T-C----T
* * * * * * ** * *
949784 CTCTAGAGTTAAAGCCAATAGGCAGACTTTA-GAT-GAGGCAGTCTCCAGGGTCAAAGCCGACAA
57 CT-AAG-GTCAAAGCCGACAGGCAGAC-TAAGGGTAGA-AAAGTCTCTAGGGTCAAAGCCGACAG
949847 GTAAACTA
118 GTAAACTA
* * * * * * * **
949855 AGGGTAGAAAAGTCTTCTA-GGTTAAAGCTGACAGTCAGCCTTTAGATGAG-GCAGTCTCTATA-
1 AGGGTAGAAAAGTC-TCCAGGGTCAAAGCCGACAGGCAGAC-TAAG-GGAGAAAAGTCTCTA-AG
* * * * * * * *
949917 GTCAAAGTCGACTA-GCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAGGCAGACTT
62 GTCAAAGCCGAC-AGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGTAAAC-T
*
949981 T
125 A
* ** * * * * * * *
949982 A-GAT-GAGGTAGTCTCCAAGGTCACAGCCAACAGGCAGACTGAAGGATAGGAAAGTCTCCAGGG
1 AGGGTAGA-AAAGTCTCCAGGGTCAAAGCCGACAGGCAGACT-AAGG-GAGAAAAGTCTCTAAGG
* *
950045 TCAAAGTCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGG
63 TCAAAGCCGACAGGCAGACT-AAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGG
950102 CAGACTTTAG
Statistics
Matches: 473, Mismatches: 124, Indels: 72
0.71 0.19 0.11
Matches are distributed among these distances:
124 1 0.00
125 20 0.04
126 284 0.60
127 40 0.08
128 36 0.08
129 1 0.00
132 1 0.00
133 4 0.01
134 7 0.01
135 65 0.14
136 13 0.03
137 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (125 bp):
AGGGTAGAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGGGAGAAAAGTCTCTAAGGTCA
AAGCCGACAGGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCGACAGGTAAACTA
Found at i:949864 original size:177 final size:169
Alignment explanation
Indices: 949290--950064 Score: 543
Period size: 168 Copynumber: 4.6 Consensus size: 169
949280 TAAAATCGAT
* * * * * * * * * *
949290 AGGCAAACTTTAGATGAGGCAGTCTTCAGGGTCAAAGACGATATGCAGACTGAGGGTAGAAAAGT
1 AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAAACTAAGGGTAGAAAAGT
* * * * ** * * * * *
949355 CTCGAGGGTC-AAGACCGATAAG-CAGGCTAAAGGTAGAA-AAGTCTCTAGGGTCAAAGCCGACA
66 CTCTAGGGTCAAAG-CCGACAGGTCAGACTTTAGAT-GAAGCAGTCTCCAGAGTCAAAGTCGACA
* * * * * *
949417 GGCAGACTAAGGGTAGAAAAGTCTCTAGGGTCAAAGCCAAC
129 AGCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCAAC
* * * * * * * * *
949458 AGGTAAAC-TAAG-GGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAAACTAAGGGCAGAAAA
1 AGGCAGACTTTAGATG-AGG-TAGTCTCCAAGGTCAAAGCCGACAGGTAAACTAAGGGTAGAAAA
* * * * * * * ** *
949521 GTCTCCAAGGTCAAAACCGACAAG-CAGAC-TAAG-GGAAGGAAAGTCTTTAGGGTCAAAGTCGA
64 GTCTCTAGGGTCAAAGCCGACAGGTCAGACTTTAGATGAA-G-CAGTCTCCAGAGTCAAAGTCGA
* * * *
949583 CAGGCAGACTGAGGG-AAGAAAAGTCTCCAAAGTCAAAGCCGAC
127 CAAGCAGACTGAGGGTAA-AAAAGTCTCCAAGGTTAAAGCCAAC
* * * * * * *
949626 AGGTAGACTTTAGATGAGATAGTCTCTAAGGTCAAAGCTGATAGGTAAACTGAGGGTAGAAAAAT
1 AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAAACTAAGGGTAGAAAAGT
* * *
949691 CTCTAGGGTCAAAGCCGACAGGT-AGATTTTAGATGAAGTAGTCTCCAGGGTCAAAG-CTGACAA
66 CTCTAGGGTCAAAGCCGACAGGTCAGACTTTAGATGAAGCAGTCTCCAGAGTCAAAGTC-GACAA
* * *
949754 GTAGACTGAGGGTAGAAAAGTCTCCAGGGTCTCTAGAGTTAAAGCCAAT
130 GCAGACTGAGGGTAAAAAAGTCTCCA--------AG-GTTAAAGCCAAC
* * *
949803 AGGCAGACTTTAGATGAGGCAGTCTCCAGGGTCAAAGCCGACAAGTAAACTAAGGGTAGAAAAGT
1 AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAAACTAAGGGTAGAAAAGT
* * * * * * *
949868 CTTCTA-GGTTAAAGCTGACA-GTCAGCCTTTAGATGAGGCAGTCTCTATAGTCAAAGTCGACTA
66 C-TCTAGGGTCAAAGCCGACAGGTCAGACTTTAGATGAAGCAGTCTCCAGAGTCAAAGTCGACAA
*
949931 GCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCGAC
130 GCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCAAC
* * * * * *
949971 AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCACAGCCAACAGGCAGACTGAAGGATAGGAAAG
1 AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAAACT-AAGGGTAGAAAAG
* *
950036 TCTCCAGGGTCAAAGTCGACAGG-CAGACT
65 TCTCTAGGGTCAAAGCCGACAGGTCAGACT
950065 GAAGGGTAGG
Statistics
Matches: 484, Mismatches: 94, Indels: 57
0.76 0.15 0.09
Matches are distributed among these distances:
165 3 0.01
166 1 0.00
167 11 0.02
168 282 0.58
169 43 0.09
170 5 0.01
176 3 0.01
177 131 0.27
178 5 0.01
ACGTcount: A:0.35, C:0.18, G:0.28, T:0.18
Consensus pattern (169 bp):
AGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCAAAGCCGACAGGTAAACTAAGGGTAGAAAAGT
CTCTAGGGTCAAAGCCGACAGGTCAGACTTTAGATGAAGCAGTCTCCAGAGTCAAAGTCGACAAG
CAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCAAC
Found at i:950113 original size:212 final size:211
Alignment explanation
Indices: 949823--950204 Score: 534
Period size: 212 Copynumber: 1.8 Consensus size: 211
949813 TAGATGAGGC
* * *
949823 AGTCTCCAGGGTCAAAGCCGACAAGTAAACTAAGGGTAGAAAAGTCTTCTAGGTTAAAGCTGACA
1 AGTCTCCAGGGTCAAAGCCGACAAGCAAACTAAGGGTAGAAAAGTCTTCTAGGTCAAAGCCGACA
* * * * *
949888 GTCAGCCTTTAGATGAGGCAGTCTCTATA-GTCAAAGTCGACTAGCAGACTGAGGGTAAAAAAGT
66 GGCAGACTTTAGATAAGGCAGTCTCTA-AGGTCAAAGCCGACTAGCAGACTGAGGATAAAAAAGT
* * *
949952 CTCCAAGGTTAAAGCCGACAGGCAGACTTTAGATGAGGTAGTCTCCAAGGTCACAGCCAACAGGC
130 CTCCAAGGTCAAAACCGACAGGCAGACTTTAAATGAGGTAGTCTCCAAGGTCACAGCCAACAGGC
950017 AGACTGAAGGATAGGAA
195 AGACTGAAGGATAGGAA
* * * *
950034 AGTCTCCAGGGTCAAAGTCGACAGGCAGACTGAAGGGTAGGAAAGTC-TCTAGGGTCAAAGCCGA
1 AGTCTCCAGGGTCAAAGCCGACAAGCAAACT-AAGGGTAGAAAAGTCTTCTA-GGTCAAAGCCGA
* * * * *
950098 CAGGCAGACTTTAGATAAGGTAGTCTCTAAGGTCAAAGCCGATTGGCAGATTGAGGATAGAAAAG
64 CAGGCAGACTTTAGATAAGGCAGTCTCTAAGGTCAAAGCCGACTAGCAGACTGAGGATAAAAAAG
*
950163 TCTCCAAGGTCAAAATCGACAGGCAGACTTTAAATGAGGTAG
129 TCTCCAAGGTCAAAACCGACAGGCAGACTTTAAATGAGGTAG
950205 ACTAAAGGAA
Statistics
Matches: 147, Mismatches: 21, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
211 32 0.22
212 115 0.78
ACGTcount: A:0.34, C:0.19, G:0.28, T:0.19
Consensus pattern (211 bp):
AGTCTCCAGGGTCAAAGCCGACAAGCAAACTAAGGGTAGAAAAGTCTTCTAGGTCAAAGCCGACA
GGCAGACTTTAGATAAGGCAGTCTCTAAGGTCAAAGCCGACTAGCAGACTGAGGATAAAAAAGTC
TCCAAGGTCAAAACCGACAGGCAGACTTTAAATGAGGTAGTCTCCAAGGTCACAGCCAACAGGCA
GACTGAAGGATAGGAA
Found at i:950146 original size:128 final size:126
Alignment explanation
Indices: 949917--950191 Score: 381
Period size: 128 Copynumber: 2.2 Consensus size: 126
949907 AGTCTCTATA
*
949917 GTCAAAGTCGACTA-GCAGACTGAGGGTAAAAAAGTCTCCAAGGTTAAAGCCGACAGGCAGACTT
1 GTCAAAGTCGAC-AGGCAGACTGAGGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTT
* * * *
949981 TAGATGAGGTAGTCTCCAAGGTCACAGCCAACAGGCAGACTGAAGGATAGGAAAGTCTCCAGG
65 TAGATAAGGTAGTCTCCAAGGTCAAAGCCAACAGGCAGACTG-AGGATAGAAAAGTCTCCAAG
** * *
950044 GTCAAAGTCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGACAGGCAGACTT
1 GTCAAAGTCGACAGGCAGACTG-AGGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTT
* * ** *
950109 TAGATAAGGTAGTCTCTAAGGTCAAAGCCGATTGGCAGATTGAGGATAGAAAAGTCTCCAAG
65 TAGATAAGGTAGTCTCCAAGGTCAAAGCCAACAGGCAGACTGAGGATAGAAAAGTCTCCAAG
*
950171 GTCAAAATCGACAGGCAGACT
1 GTCAAAGTCGACAGGCAGACT
950192 TTAAATGAGG
Statistics
Matches: 131, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
126 1 0.01
127 58 0.44
128 72 0.55
ACGTcount: A:0.35, C:0.19, G:0.29, T:0.17
Consensus pattern (126 bp):
GTCAAAGTCGACAGGCAGACTGAGGGTAAAAAAGTCTCCAAGGTCAAAGCCGACAGGCAGACTTT
AGATAAGGTAGTCTCCAAGGTCAAAGCCAACAGGCAGACTGAGGATAGAAAAGTCTCCAAG
Found at i:950183 original size:84 final size:85
Alignment explanation
Indices: 949949--950204 Score: 225
Period size: 85 Copynumber: 3.0 Consensus size: 85
949939 AGGGTAAAAA
* ** ** * * *
949949 AGTCTCCAAGGTTAAAGCCGACAGGCAGACTTTA-GAT-GAGGTAGTCTCCAAGGTCACAGCCAA
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAAGGATAGA-AAAGTCTCCAAGGTCAAAACCGA
* *
950012 CAGGCAGAC-TGAAGGAT-AGGAA
65 CAGGCAGACTTTAA--ATAAGG-T
* * * * * * *
950034 AGTCTCCAGGGTCAAAGTCGACAGGCAGACTGAAGGGTAGGAAAGTCTCTAGGGTCAAAGCCGAC
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAAGGTCAAAACCGAC
*
950099 AGGCAGACTTTAGATAAGGT
66 AGGCAGACTTTAAATAAGGT
* ** * *
950119 AGTCTCTAAGGTCAAAGCCGATTGGCAGATTG-AGGATAGAAAAGTCTCCAAGGTCAAAATCGAC
1 AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAAGGTCAAAACCGAC
*
950183 AGGCAGACTTTAAATGAGGT
66 AGGCAGACTTTAAATAAGGT
950203 AG
1 AG
950205 ACTAAAGGAA
Statistics
Matches: 137, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
84 46 0.34
85 57 0.42
86 31 0.23
87 3 0.02
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (85 bp):
AGTCTCCAAGGTCAAAGCCGACAGGCAGACTGAAGGATAGAAAAGTCTCCAAGGTCAAAACCGAC
AGGCAGACTTTAAATAAGGT
Found at i:955537 original size:33 final size:33
Alignment explanation
Indices: 955494--955559 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
955484 AAATTTTCAG
*
955494 ATGTATCGATACAAAG-ATCAATGTATCGATACA
1 ATGTACCGATACAAAGAAT-AATGTATCGATACA
* **
955527 ATGTACCGATAGATTGAATAATGTATCGATACA
1 ATGTACCGATACAAAGAATAATGTATCGATACA
955560 TTTCCTTGGC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.41, C:0.14, G:0.17, T:0.29
Consensus pattern (33 bp):
ATGTACCGATACAAAGAATAATGTATCGATACA
Found at i:962250 original size:22 final size:23
Alignment explanation
Indices: 962225--962269 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
962215 ATTCTTAGTA
*
962225 ATTAAGCAAATATTG-ATGAATG
1 ATTAAGAAAATATTGAATGAATG
* *
962247 ATTATGAAAATGTTGAATGAATG
1 ATTAAGAAAATATTGAATGAATG
962270 CCATGAATAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.44, C:0.02, G:0.20, T:0.33
Consensus pattern (23 bp):
ATTAAGAAAATATTGAATGAATG
Found at i:966692 original size:16 final size:15
Alignment explanation
Indices: 966666--966709 Score: 56
Period size: 16 Copynumber: 3.0 Consensus size: 15
966656 AATAAAAAGA
966666 ATTTTTTATTATTTT
1 ATTTTTTATTATTTT
966681 ATTTTGTTATTATTTT
1 ATTTT-TTATTATTTT
*
966697 -TTTATTA-TATTTT
1 ATTTTTTATTATTTT
966710 TAAAAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 6 0.22
14 3 0.11
15 8 0.30
16 10 0.37
ACGTcount: A:0.20, C:0.00, G:0.02, T:0.77
Consensus pattern (15 bp):
ATTTTTTATTATTTT
Found at i:967674 original size:24 final size:25
Alignment explanation
Indices: 967617--967679 Score: 83
Period size: 24 Copynumber: 2.6 Consensus size: 25
967607 ACTGTAGTGT
* *
967617 TCATGGATGCTGCTGCTTGTCGTGC
1 TCATGGATGCTGCTGCTTGCCATGC
*
967642 TCATTGATGCTGCTGC-TGCCATGC
1 TCATGGATGCTGCTGCTTGCCATGC
*
967666 TCGTGGATGCTGCT
1 TCATGGATGCTGCT
967680 ACTATGTTCG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
24 18 0.55
25 15 0.45
ACGTcount: A:0.10, C:0.25, G:0.30, T:0.35
Consensus pattern (25 bp):
TCATGGATGCTGCTGCTTGCCATGC
Found at i:967678 original size:21 final size:21
Alignment explanation
Indices: 967652--967693 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
967642 TCATTGATGC
*
967652 TGCTGCTGCCATGCTCGTGGA
1 TGCTGCTACCATGCTCGTGGA
* *
967673 TGCTGCTACTATGTTCGTGGA
1 TGCTGCTACCATGCTCGTGGA
967694 AGTTGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.12, C:0.24, G:0.31, T:0.33
Consensus pattern (21 bp):
TGCTGCTACCATGCTCGTGGA
Found at i:968374 original size:31 final size:31
Alignment explanation
Indices: 968322--968387 Score: 96
Period size: 31 Copynumber: 2.1 Consensus size: 31
968312 TTCTTTCCAT
* *
968322 TTGCTTGTGTCTTCCAAGATTGCATACTACA
1 TTGCATGTGTCTCCCAAGATTGCATACTACA
* *
968353 TTGCATGTGTCTCCCATGATTGCATGCTACA
1 TTGCATGTGTCTCCCAAGATTGCATACTACA
968384 TTGC
1 TTGC
968388 CTTGCATGCA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.20, C:0.24, G:0.18, T:0.38
Consensus pattern (31 bp):
TTGCATGTGTCTCCCAAGATTGCATACTACA
Found at i:968448 original size:9 final size:9
Alignment explanation
Indices: 968436--968493 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
968426 ATTTCATGAT
968436 TTTTTTTTA
1 TTTTTTTTA
968445 -TTTTTTTA
1 TTTTTTTTA
*
968453 TTTTTATTAA
1 TTTTT-TTTA
*
968463 TTTTTATTA
1 TTTTTTTTA
968472 TTATTTTTTA
1 TT-TTTTTTA
**
968482 AATTTTTTA
1 TTTTTTTTA
968491 TTT
1 TTT
968494 CTACTTATTA
Statistics
Matches: 38, Mismatches: 8, Indels: 6
0.73 0.15 0.12
Matches are distributed among these distances:
8 8 0.21
9 16 0.42
10 14 0.37
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:968481 original size:13 final size:13
Alignment explanation
Indices: 968434--968481 Score: 51
Period size: 13 Copynumber: 3.6 Consensus size: 13
968424 GCATTTCATG
*
968434 ATTTTTTTTTATT
1 ATTTTTTATTATT
* *
968447 TTTTTATTTTTATT
1 ATTTT-TTATTATT
*
968461 AATTTTTATTATT
1 ATTTTTTATTATT
968474 ATTTTTTA
1 ATTTTTTA
968482 AATTTTTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
13 18 0.62
14 11 0.38
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
ATTTTTTATTATT
Found at i:968501 original size:29 final size:30
Alignment explanation
Indices: 968442--968505 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
968432 TGATTTTTTT
* * *
968442 TTATTTTTTTATTTTTATTAATTTTTATTA
1 TTATTTTTTAAATTTTATTAATTTCTATTA
968472 TTATTTTTTAAATTTT-TT-ATTTCTACTTA
1 TTATTTTTTAAATTTTATTAATTTCTA-TTA
968501 TTATT
1 TTATT
968506 CTATTCCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
28 6 0.20
29 10 0.33
30 14 0.47
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.73
Consensus pattern (30 bp):
TTATTTTTTAAATTTTATTAATTTCTATTA
Found at i:977071 original size:34 final size:34
Alignment explanation
Indices: 977028--977143 Score: 223
Period size: 34 Copynumber: 3.4 Consensus size: 34
977018 TAAAGATCAG
*
977028 TGTATCGATACAATGTATCGATACATTTGAGTAA
1 TGTATCGATACATTGTATCGATACATTTGAGTAA
977062 TGTATCGATACATTGTATCGATACATTTGAGTAA
1 TGTATCGATACATTGTATCGATACATTTGAGTAA
977096 TGTATCGATACATTGTATCGATACATTTGAGTAA
1 TGTATCGATACATTGTATCGATACATTTGAGTAA
977130 TGTATCGATACATT
1 TGTATCGATACATT
977144 TTTTGGTAGT
Statistics
Matches: 81, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
34 81 1.00
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (34 bp):
TGTATCGATACATTGTATCGATACATTTGAGTAA
Found at i:977121 original size:13 final size:12
Alignment explanation
Indices: 977028--977142 Score: 92
Period size: 13 Copynumber: 10.1 Consensus size: 12
977018 TAAAGATCAG
977028 TGTATCGATACAA
1 TGTATCGATAC-A
977041 TGTATCGATACA
1 TGTATCGATACA
977053 T-T-T-GAGTA-A
1 TGTATCGA-TACA
977062 TGTATCGATACA
1 TGTATCGATACA
977074 TTGTATCGATACA
1 -TGTATCGATACA
977087 T-T-T-GAGTA-A
1 TGTATCGA-TACA
977096 TGTATCGATACA
1 TGTATCGATACA
977108 TTGTATCGATACA
1 -TGTATCGATACA
977121 T-T-T-GAGTA-A
1 TGTATCGA-TACA
977130 TGTATCGATACA
1 TGTATCGATACA
977142 T
1 T
977143 TTTTTGGTAG
Statistics
Matches: 85, Mismatches: 0, Indels: 35
0.71 0.00 0.29
Matches are distributed among these distances:
9 12 0.14
10 12 0.14
11 12 0.14
12 14 0.16
13 35 0.41
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.37
Consensus pattern (12 bp):
TGTATCGATACA
Found at i:977199 original size:32 final size:33
Alignment explanation
Indices: 977158--977226 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
977148 GGTAGTAGCT
*
977158 TACATTGTATTGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
977190 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
977223 TACA
1 TACA
977227 AATCATTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 19 0.56
33 15 0.44
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:977200 original size:13 final size:13
Alignment explanation
Indices: 977182--977206 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
977172 ACAAAACTTA
977182 TGTATCGATACAT
1 TGTATCGATACAT
977195 TGTATCGATACA
1 TGTATCGATACA
977207 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:978131 original size:52 final size:52
Alignment explanation
Indices: 978068--978763 Score: 309
Period size: 43 Copynumber: 14.7 Consensus size: 52
978058 AGATGAAGGT
* * *
978068 GCCAATGTGCTGATTTAAGGCCAGCGACATTGGACTTAAAGATAACAAA-GAC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATG-C
* * *
978120 GCCAATATGCTGATTCAAGGCTAGTGATATTGGACTTAAAGATGACAAATGC
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
*
978172 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG---------GT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * * * ** *
978215 GCCAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAGAT---GAGGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATAACAAATGC
*
978265 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAG-T------T--
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * *
978308 GCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGAT----AATGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAAT-GC
*
978357 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG---------GT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * * *
978400 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAG--AA-GAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* *
978449 GCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAG---------GT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * ** *
978492 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGAT---GAGGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AAAGATAACAAATGC
**
978542 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAG-T------T--
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * *
978585 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT----GATGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAAT-GC
* * *
978634 GCCAATATGTTGATTCAAGGCCAGCGATATTAGACTTAAAG---------GT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* * * * * * *
978677 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAG--AA-GAAGGT
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
* *
978726 GCCAATATGCTGATTCAAGGCCAACGATATTGGGCTTA
1 GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
978764 GAAGGGTTGC
Statistics
Matches: 538, Mismatches: 67, Indels: 81
0.78 0.10 0.12
Matches are distributed among these distances:
43 217 0.40
44 10 0.02
46 2 0.00
48 2 0.00
49 153 0.28
50 70 0.13
52 83 0.15
53 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (52 bp):
GCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATAACAAATGC
Found at i:978403 original size:92 final size:92
Alignment explanation
Indices: 978120--978768 Score: 919
Period size: 92 Copynumber: 7.0 Consensus size: 92
978110 TAACAAAGAC
* * * *
978120 GCCAATATGCTGATTCAAGGCTAG-TGATATTGGACTTAAAGATGACAAAT-GCGCCAATATGCT
1 GCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGAT----AATGGTGCCAATATGCT
978183 GATTCAAGGCCAGCGATATTGGACTTAAAGGT
61 GATTCAAGGCCAGCGATATTGGACTTAAAGGT
* * * * * *
978215 GCCAATGTGCTAATTCAAGGCCAACGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATAATGGTGCCAATATGCTGATT
* *
978280 CAAGGCCAGCGATATTGGACTTAGAGTT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
*
978308 GCCAATGTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTC
978373 AAGGCCAGCGATATTGGACTTAAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
*
978400 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-AGAAGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA-ATGGTGCCAATATGCTGATT
*
978464 CAAGGCCAGCTATATTGGACTTAAAGGT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
* * * *
978492 GCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AAAGATAATGGTGCCAATATGCTGATT
** *
978557 CAAGGCCAGCGATATTGGACTTGGAGTT
65 CAAGGCCAGCGATATTGGACTTAAAGGT
* *
978585 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGTTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTC
*
978650 AAGGCCAGCGATATTAGACTTAAAGGT
66 AAGGCCAGCGATATTGGACTTAAAGGT
* *
978677 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGA-AGAAGGTGCCAATATGCTGATT
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATA-ATGGTGCCAATATGCTGATT
* *
978741 CAAGGCCAACGATATTGGGCTTAGAAGG
65 CAAGGCCAGCGATATTGGACTTA-AAGG
978769 GTTGCCACCG
Statistics
Matches: 499, Mismatches: 47, Indels: 18
0.88 0.08 0.03
Matches are distributed among these distances:
91 1 0.00
92 302 0.61
93 161 0.32
95 29 0.06
96 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGGT
Found at i:978545 original size:185 final size:184
Alignment explanation
Indices: 978054--978768 Score: 957
Period size: 185 Copynumber: 3.8 Consensus size: 184
978044 CTTAGGAATG
* * *
978054 TTAAAGATGAAGGTGCCAATGTGCTGATTTAAGGCCAGCGACATTGGACTTAAAGATAACAAAGA
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG--------G-
* * * * * * *
978119 CGCCAATATGCTGATTCAAGGCTAG-TGATATTGGACTTAAAGATGACAAATGCGCCAATATGCT
57 TGCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGGCTTAAAGATG---AAGGTGCCAATATGCT
* * *
978183 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGG
118 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGG
*
978248 GC
183 AC
* * *
978250 TTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGTTGCCAATG
1 TT-AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATG
* *
978315 TACTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-AATGGTGCCAATATGCTGATTCAAGGCC
65 TGCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAA-GGTGCCAATATGCTGATTCAAGGCC
978379 AGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
129 AGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* *
978435 TTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
* *
978500 GCTGATTCAAGGCCAGCGACATTGGGCTTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCA
66 GCTGATTCAAGGCCAGCTACATTGGGCTT-AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCA
** *
978565 GCGATATTGGACTTGGAGTTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
130 GCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
* * *
978620 TTAAAGATGATGGTGCCAATATGTTGATTCAAGGCCAGCGATATTAGACTTAAAGGTGCCAATGT
1 TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
** * *
978685 GCTGATTCAAGGCCAGCTACATTGGATTTAAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAA
66 GCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
*
978750 CGATATTGGGCTTAGAAGG
131 CGATATTGGACTTA-AAGG
978769 GTTGCCACCG
Statistics
Matches: 469, Mismatches: 44, Indels: 23
0.88 0.08 0.04
Matches are distributed among these distances:
184 131 0.28
185 249 0.53
186 1 0.00
188 37 0.08
189 1 0.00
196 2 0.00
197 48 0.10
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (184 bp):
TTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGT
GCTGATTCAAGGCCAGCTACATTGGGCTTAAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAG
CGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGAC
Found at i:978560 original size:277 final size:277
Alignment explanation
Indices: 978120--978768 Score: 1093
Period size: 277 Copynumber: 2.3 Consensus size: 277
978110 TAACAAAGAC
* * * * * *
978120 GCCAATATGCTGATTCAAGGCTAG-TGATATTGGACTTAAAGATGACAAATGCGCCAATATGCTG
1 GCCAATGTGCTGATTCAAGGCCAGCT-ACATTGGACTTAAAGA--A-GAAGGTGCCAATATGCTG
978184 ATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGG
62 ATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGG
978249 CTTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGTTGCCAAT
127 CTTAAAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGTTGCCAAT
978314 GTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCC
192 GTACTGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCC
*
978379 AGCGATATTGGACTTAAAGGT
257 AGCGATATTAGACTTAAAGGT
978400 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
* * *
978465 AAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTTA
66 AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGGCTTA
* *
978530 AAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTGGAGTTGCCAATGTGC
131 AAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGTTGCCAATGTAC
* *
978595 TGATTCAAGGCCAGCTACATTGGACTTAAAGATGATGGTGCCAATATGTTGATTCAAGGCCAGCG
196 TGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCG
978660 ATATTAGACTTAAAGGT
261 ATATTAGACTTAAAGGT
*
978677 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGATTTAAAGAAGAAGGTGCCAATATGCTGATTC
1 GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
* *
978742 AAGGCCAACGATATTGGGCTTAGAAGG
66 AAGGCCAGCGATATTGGACTTA-AAGG
978769 GTTGCCACCG
Statistics
Matches: 349, Mismatches: 18, Indels: 6
0.94 0.05 0.02
Matches are distributed among these distances:
277 306 0.88
278 5 0.01
280 37 0.11
281 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (277 bp):
GCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGGCTTA
AAAGATGAGGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAGAGTTGCCAATGTAC
TGATTCAAGGCCAGCTACATTGGACTTAAAGATAATGGTGCCAATATGCTGATTCAAGGCCAGCG
ATATTAGACTTAAAGGT
Found at i:978921 original size:96 final size:96
Alignment explanation
Indices: 978756--978960 Score: 306
Period size: 96 Copynumber: 2.1 Consensus size: 96
978746 CCAACGATAT
* * *
978756 TGGGCTTAG-AAGGGTTGCCACCGATTTGTGTGGGCTTTAGAGAATGGTTGCCACCAACTTGTGT
1 TGGGCTTTGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGT
**
978820 GGGCTTTAGAGGGGGTTGCCACCAACTTGTG
66 GGGCTTTAGAAAGGGTTGCCACCAACTTGTG
**
978851 TGGGCTTTGGAAAGGGTTGCCACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACTGACTTGTG
1 TGGGCTTT-GAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTG
* *
978915 TGGGCTTTGGAAAGGGTTGCCACCGACTTGTG
65 TGGGCTTTAGAAAGGGTTGCCACCAACTTGTG
978947 TGGGCTTTGAAAGG
1 TGGGCTTTGAAAGG
978961 AAGGTGCCAC
Statistics
Matches: 99, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
95 13 0.13
96 58 0.59
97 28 0.28
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (96 bp):
TGGGCTTTGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCACCAACTTGTGT
GGGCTTTAGAAAGGGTTGCCACCAACTTGTG
Found at i:978955 original size:32 final size:31
Alignment explanation
Indices: 978756--978960 Score: 277
Period size: 32 Copynumber: 6.5 Consensus size: 31
978746 CCAACGATAT
* *
978756 TGGGCTTAG-AAGGGTTGCCACCGATTTGTG
1 TGGGCTTTGAAAGGGTTGCCACCGACTTGTG
* *
978786 TGGGCTTTAGAGAATGGTTGCCACCAACTTGTG
1 TGGGCTTT-GA-AAGGGTTGCCACCGACTTGTG
** *
978819 TGGGCTTTAGAGGGGGTTGCCACCAACTTGTG
1 TGGGCTTT-GAAAGGGTTGCCACCGACTTGTG
978851 TGGGCTTTGGAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTT-GAAAGGGTTGCCACCGACTTGTG
*
978883 TGGGCTTTGAGAAGGGTTGCCACTGACTTGTG
1 TGGGCTTTGA-AAGGGTTGCCACCGACTTGTG
978915 TGGGCTTTGGAAAGGGTTGCCACCGACTTGTG
1 TGGGCTTT-GAAAGGGTTGCCACCGACTTGTG
978947 TGGGCTTTGAAAGG
1 TGGGCTTTGAAAGG
978961 AAGGTGCCAC
Statistics
Matches: 157, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
30 7 0.04
31 9 0.06
32 110 0.70
33 31 0.20
ACGTcount: A:0.17, C:0.17, G:0.37, T:0.29
Consensus pattern (31 bp):
TGGGCTTTGAAAGGGTTGCCACCGACTTGTG
Found at i:979055 original size:100 final size:100
Alignment explanation
Indices: 978945--979248 Score: 384
Period size: 100 Copynumber: 3.0 Consensus size: 100
978935 CACCGACTTG
* *
978945 TGTGGGCTTTGAAAGGAAGGTGCCACAGAGTCGTGGAC-TTAAAAGGAATAAGGTGCCACGGGGT
1 TGTGGGCTTTGAAAGGAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGT
*
979009 TGTGGACTTTAAAAGGGAAAAAGAGTGCCACGGAGT
66 TGTGGACTTTAAAA-AGAAAAAGAGTGCCACGGAGT
* ** * * *
979045 TGTGGGCTTTGAAAAGAAGGTGCCATGGAGTTGTGGACTTTGAAAGGAACAAGGTGCCATGGGGT
1 TGTGGGCTTTGAAAGGAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGT
*
979110 CGTGGAC-TTAAAAAG-AAAAG-GTGCCACGGAGT
66 TGTGGACTTTAAAAAGAAAAAGAGTGCCACGGAGT
* * * * *
979142 GGTGGGCTTTGAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGATGCCACGG
1 TGTGGGCTTTG-AAAG--GAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGG
* *
979207 AGTTGTGGGCTTTAAAAAGAAAAA-AGTGCCACGGAGT
63 GGTTGTGGACTTTAAAAAGAAAAAGAGTGCCACGGAGT
979244 TGTGG
1 TGTGG
979249 ACTTAAAAGG
Statistics
Matches: 173, Mismatches: 24, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
97 22 0.13
98 8 0.05
99 1 0.01
100 85 0.49
101 37 0.21
102 20 0.12
ACGTcount: A:0.32, C:0.12, G:0.35, T:0.21
Consensus pattern (100 bp):
TGTGGGCTTTGAAAGGAAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGT
TGTGGACTTTAAAAAGAAAAAGAGTGCCACGGAGT
Found at i:979104 original size:34 final size:34
Alignment explanation
Indices: 978961--979285 Score: 321
Period size: 34 Copynumber: 9.7 Consensus size: 34
978951 CTTTGAAAGG
* * *
978961 AAGGTGCCACAGAGTCGTGGAC-TTAAAAGGAAT
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
*
978994 AAGGTGCCACGGGGTTGTGGACTTTAAAAGGGAAA
1 AAGGTGCCACGGAGTTGTGGACTTTAAAA-GGAAA
*
979029 AAGAGTGCCACGGAGTTGTGGGCTTTGAAAA-G---
1 AAG-GTGCCACGGAGTTGTGGACTTT-AAAAGGAAA
* * *
979061 AAGGTGCCATGGAGTTGTGGACTTTGAAAGGAAC
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
* * * *
979095 AAGGTGCCATGGGGTCGTGGAC-TTAAAAAG-AA
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
* *
979127 AAGGTGCCACGGAGTGGTGGGCTTTGAAAA-GAAA
1 AAGGTGCCACGGAGTTGTGGACTTT-AAAAGGAAA
* * *
979161 AAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
* * *
979195 AAGATGCCACGGAGTTGTGGGCTTTAAAAAGAAA
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
*
979229 AAAGTGCCACGGAGTTGTGGAC-TTAAAAGG-AA
1 AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
* *
979261 CAGAGTGCCACGTAGTTGTGG-CTTT
1 AAG-GTGCCACGGAGTTGTGGACTTT
979286 GCAAAAAAGG
Statistics
Matches: 249, Mismatches: 29, Indels: 28
0.81 0.09 0.09
Matches are distributed among these distances:
30 3 0.01
31 21 0.08
32 26 0.10
33 57 0.23
34 110 0.44
35 8 0.03
36 20 0.08
37 4 0.02
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (34 bp):
AAGGTGCCACGGAGTTGTGGACTTTAAAAGGAAA
Found at i:979112 original size:134 final size:130
Alignment explanation
Indices: 978945--979291 Score: 405
Period size: 134 Copynumber: 2.6 Consensus size: 130
978935 CACCGACTTG
* *
978945 TGTGGGCTTTGAAAGG--AAGGTGCCACAGAGTCGTGGACTTAAAAGGAATAAGGTGCCACGGGG
1 TGTGGGCTTTGAAAGGAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAA-AAGGTGCCACGGAG
* * * *
979008 TTGTGGACTTT-AAAAGGGAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAAAAG-AAGGTGCCAT
65 TTGTGG-CTTTGAAAA--GAAAAAG-GTGCCACAGAGTTGTGGGCTTTAAAAAGAAAGATGCCAC
979071 GGAGT
126 GGAGT
* * * *
979076 TGTGGACTTTGAAAGGAACAAGGTGCCATGGGGTCGTGGACTTAAAAAGAAAAGGTGCCACGGAG
1 TGTGGGCTTTGAAAGGAA-AAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAGGTGCCACGGAG
*
979141 TGGTGGGCTTTGAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGATGCCACG
65 TTGT-GGCTTTGAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTAAAAAG--AAAGATGCCACG
979206 GAGT
127 GAGT
* * * * * *
979210 TGTGGGCTTTAAAAAGAAAAAAGTGCCACGGAGTTGTGGACTTAAAAGGAACAGAGTGCCACGTA
1 TGTGGGCTTT-GAAAGGAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAG-GTGCCACGGA
979275 GTTGTGGCTTTGCAAAA
64 GTTGTGGCTTTG-AAAA
979292 AAGGATGCCA
Statistics
Matches: 183, Mismatches: 22, Indels: 18
0.82 0.10 0.08
Matches are distributed among these distances:
131 41 0.22
132 7 0.04
133 20 0.11
134 92 0.50
135 23 0.13
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (130 bp):
TGTGGGCTTTGAAAGGAAAAGGTGCCACGGAGTCGTGGACTTAAAAGGAAAAGGTGCCACGGAGT
TGTGGCTTTGAAAAGAAAAAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAGATGCCACGGAGT
Found at i:979257 original size:100 final size:100
Alignment explanation
Indices: 978961--979285 Score: 356
Period size: 100 Copynumber: 3.2 Consensus size: 100
978951 CTTTGAAAGG
* * *
978961 AAGGTGCCACAGAGTCGTGGAC-TTAAAAGGAATAAGGTGCCACGGGGTTGTGGACTTTAAAAGG
1 AAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGTTGTGGACTTTAAAA-A
** *
979025 GAAAAAGAGTGCCACGGAGTTGTGGGCTTTGAA-AAG
65 GAAAAA-AGTGCCACGGAGTTGTGGGCTTAAAAGAAA
** * * * *
979061 AAGGTGCCATGGAGTTGTGGACTTTGAAAGGAACAAGGTGCCATGGGGTCGTGGAC-TTAAAAAG
1 AAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGTTGTGGACTTTAAAAAG
* *
979125 -AAAAGGTGCCACGGAGTGGTGGGCTTTGAAAAGAAA
66 AAAAAAGTGCCACGGAGTTGTGGGC-TT-AAAAGAAA
* * * * *
979161 AAGGTGCCACAGAGTTGTGGGCTTTAAAAAGAAAAAGATGCCACGGAGTTGTGGGCTTTAAAAAG
1 AAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGTTGTGGACTTTAAAAAG
* *
979226 AAAAAAGTGCCACGGAGTTGTGGACTTAAAAGGAA
66 AAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGAAA
*
979261 CAGAGTGCCAC-GTAGTTGTGG-CTTT
1 AAG-GTGCCACAG-AGTTGTGGACTTT
979286 GCAAAAAAGG
Statistics
Matches: 188, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
97 18 0.10
98 6 0.03
99 3 0.02
100 86 0.46
101 54 0.29
102 21 0.11
ACGTcount: A:0.33, C:0.13, G:0.34, T:0.21
Consensus pattern (100 bp):
AAGGTGCCACAGAGTTGTGGACTTTAAAAGGAAAAAGGTGCCACGGGGTTGTGGACTTTAAAAAG
AAAAAAGTGCCACGGAGTTGTGGGCTTAAAAGAAA
Found at i:981004 original size:13 final size:13
Alignment explanation
Indices: 980986--981011 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
980976 CAATTTTTTG
980986 TGTATCGATACAT
1 TGTATCGATACAT
980999 TGTATCGATACAT
1 TGTATCGATACAT
981012 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:983577 original size:13 final size:13
Alignment explanation
Indices: 983559--983584 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
983549 ATAATCACCC
983559 TGTATCGATACAA
1 TGTATCGATACAA
983572 TGTATCGATACAA
1 TGTATCGATACAA
983585 AGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:985683 original size:15 final size:15
Alignment explanation
Indices: 985663--985693 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
985653 ATTTCGTTTG
*
985663 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
985678 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
985693 G
1 G
985694 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:987526 original size:21 final size:21
Alignment explanation
Indices: 987497--987541 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
987487 AAGTTTTCAT
*
987497 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
987517 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
987539 TTT
1 TTT
987542 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Done.