Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold45
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1408018
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 441 characters in sequence are not A, C, G, or T
File 6 of 8
Found at i:905399 original size:15 final size:14
Alignment explanation
Indices: 905367--905405 Score: 69
Period size: 14 Copynumber: 2.8 Consensus size: 14
905357 AAAACTTAAG
905367 TTTTTAGGCATAAA
1 TTTTTAGGCATAAA
*
905381 TTTTTAGGTATAAA
1 TTTTTAGGCATAAA
905395 TTTTTAGGCAT
1 TTTTTAGGCAT
905406 GAACTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.31, C:0.05, G:0.15, T:0.49
Consensus pattern (14 bp):
TTTTTAGGCATAAA
Found at i:916385 original size:21 final size:21
Alignment explanation
Indices: 916334--916386 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 21
916324 ATATATTACA
*
916334 CATTTT-ATTCATACCTTTGC
1 CATTTTCATTCATACCTTCGC
*
916354 CACTATTTCATTCATACCTTCGT
1 CA-T-TTTCATTCATACCTTCGC
916377 CATTTTCATT
1 CATTTTCATT
916387 TGTACCCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
20 2 0.07
21 8 0.29
22 4 0.14
23 14 0.50
ACGTcount: A:0.21, C:0.26, G:0.04, T:0.49
Consensus pattern (21 bp):
CATTTTCATTCATACCTTCGC
Found at i:917680 original size:32 final size:31
Alignment explanation
Indices: 917644--917895 Score: 159
Period size: 32 Copynumber: 7.7 Consensus size: 31
917634 GTTGACATGA
* *
917644 AGGTTTTGCCCTAGTCAACCTTTTTTTAACCT
1 AGGTTTTGCCCTGGTC-ACCTTTTTTTGACCT
* *
917676 AGGTTTTGCCCTGGTCA-TTTTTAGGTTTGACGT
1 AGGTTTTGCCCTGGTCACCTTTT---TTTGACCT
* *
917709 GATGGTTTTGCCCTGGTCGACCTCTTTTCT-ACCA
1 -A-GGTTTTGCCCTGGTC-ACCT-TTTTTTGACCT
* * *
917743 AGGTTTTGCCTTGGTCGATCTCTTTTTGACCT
1 AGGTTTTGCCCTGGTC-ACCTTTTTTTGACCT
* * * *
917775 AGGTTTTGCCTTGGTCAATCTCTTTTTGACCC
1 AGGTTTTGCCCTGGTC-ACCTTTTTTTGACCT
* ** *
917807 AGGTTTTGCCTTGGTCACCTTGTAGTTGACGT
1 AGGTTTTGCCCTGGTCACCTT-TTTTTGACCT
* * *
917839 GATGGTTTTGCCCTGGTCAAACC-ATTTTCGACTT
1 -A-GGTTTTGCCCTGGTC--ACCTTTTTTTGACCT
*
917873 AGGTTTTGCCCTAGTCACCTTTT
1 AGGTTTTGCCCTGGTCACCTTTT
917896 AGTTGACGTG
Statistics
Matches: 176, Mismatches: 29, Indels: 31
0.75 0.12 0.13
Matches are distributed among these distances:
30 7 0.04
31 10 0.06
32 102 0.58
33 9 0.05
34 23 0.13
35 17 0.10
36 4 0.02
37 1 0.01
38 3 0.02
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.42
Consensus pattern (31 bp):
AGGTTTTGCCCTGGTCACCTTTTTTTGACCT
Found at i:917695 original size:66 final size:66
Alignment explanation
Indices: 917583--918103 Score: 327
Period size: 66 Copynumber: 8.0 Consensus size: 66
917573 GACATAATAG
* * * * ** * * *
917583 TTTGCCTTGGTCAA-CATTTTTTGACTTAAGTTTCACCCTGGTCATTTTTTAGTTGACATGAAGG
1 TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATGG
917647 T
66 T
* *
917648 TTTGCCCTAGTCAACCTTTTTTTAACCTAGGTTTTGCCCTGGTCA-TTTTTAGGTTTGACGTGAT
1 TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTA-G-TTGACGTGAT
917712 GGT
64 GGT
* * * * * *
917715 TTTGCCCTGGTCGACCTCTTTTCT-ACCAAGGTTTTGCCTTGGTCGATCTCTTT--TTGACCT-A
1 TTTGCCCTGGTCAACCT-TTTTTTGACCTAGGTTTTGCCCTGGTC-A-CTTTTTAGTTGACGTGA
917776 -GGT
63 TGGT
* * * * * * *
917779 TTTGCCTTGGTCAATCTCTTTTTGACCCAGGTTTTGCCTTGGTCACCTTGTAGTTGACGTGATGG
1 TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATGG
917844 T
66 T
* * * * *
917845 TTTGCCCTGGTCAAACC-ATTTTCGACTTAGGTTTTGCCCTAGTCACCTTTTAGTTGACGTGATG
1 TTTGCCCTGGTC-AACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATG
917909 GT
65 GT
* * * ** * *
917911 TTT---C--AT--AGCTTCTTTTTGACTTAGGTTTCACCTTGGTCA-TCTTTTAGTTGACATGAT
1 TTTGCCCTGGTCAACCTT-TTTTTGACCTAGGTTTTGCCCTGGTCACT-TTTTAGTTGACGTGAT
917968 GGT
64 GGT
* * * * * * ** ** * *
917971 TTCGCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGACCTAATTGCCTTTTAGTTGACATGATGG
1 TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATGG
918036 T
66 T
* * ** * * * ** * *
918037 TTCGCTCTGGTCAATGTCTTTTAGACTTAGGTTTCACCCTGGTCACATTTTAGTTGACGTTATGG
1 TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATGG
918102 T
66 T
918103 T
1 T
918104 CCGCCTTTTT
Statistics
Matches: 359, Mismatches: 73, Indels: 47
0.75 0.15 0.10
Matches are distributed among these distances:
58 2 0.01
60 42 0.12
61 1 0.00
62 3 0.01
63 6 0.02
64 42 0.12
65 21 0.06
66 182 0.51
67 50 0.14
68 6 0.02
70 4 0.01
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.43
Consensus pattern (66 bp):
TTTGCCCTGGTCAACCTTTTTTTGACCTAGGTTTTGCCCTGGTCACTTTTTAGTTGACGTGATGG
T
Found at i:917856 original size:34 final size:33
Alignment explanation
Indices: 917808--917913 Score: 103
Period size: 34 Copynumber: 3.2 Consensus size: 33
917798 TTTTGACCCA
*
917808 GGTTTTGCCTTGGTCACCTTGTAGTTGACGTGAT
1 GGTTTTGCCCTGGTCACCTT-TAGTTGACGTGAT
* *
917842 GGTTTTGCCCTGGTCAAACCATTT--TCGAC-TTA-
1 GGTTTTGCCCTGGTC--ACC-TTTAGTTGACGTGAT
*
917874 GGTTTTGCCCTAGTCACCTTTTAGTTGACGTGAT
1 GGTTTTGCCCTGGTCACC-TTTAGTTGACGTGAT
917908 GGTTTT
1 GGTTTT
917914 CATAGCTTCT
Statistics
Matches: 58, Mismatches: 7, Indels: 14
0.73 0.09 0.18
Matches are distributed among these distances:
30 6 0.10
32 18 0.31
33 4 0.07
34 24 0.41
36 4 0.07
37 2 0.03
ACGTcount: A:0.14, C:0.20, G:0.25, T:0.42
Consensus pattern (33 bp):
GGTTTTGCCCTGGTCACCTTTAGTTGACGTGAT
Found at i:917878 original size:130 final size:131
Alignment explanation
Indices: 917644--917882 Score: 313
Period size: 131 Copynumber: 1.8 Consensus size: 131
917634 GTTGACATGA
* * * *
917644 AGGTTTTGCCCTAGTCAACCTTTTTTTAACCTAGGTTTTGCCCTGGTCATTTTTAGGTTTGACGT
1 AGGTTTTGCCCTAGTCAACCTCTTTTTAACCCAGGTTTTGCCCTGGTCACTTGTAGGTTTGACGT
* * *
917709 GATGGTTTTGCCCTGGTCGACCTCTTTTCTACCAAGGTTTTGCCTTGGTCGATCTCTTTTTGACC
66 GATGGTTTTGCCCTGGTCAACCTATTTTCGACCAAGGTTTTGCCTTGGTCGATCTCTTTTTGACC
917774 T
131 T
* * * * *
917775 AGGTTTTGCCTTGGTCAATCTCTTTTTGACCCAGGTTTTGCCTTGGTCACCTTGTA-G-TTGACG
1 AGGTTTTGCCCTAGTCAACCTCTTTTTAACCCAGGTTTTGCCCTGGTCA-CTTGTAGGTTTGACG
**
917838 TGATGGTTTTGCCCTGGTCAAACC-ATTTTCGACTTAGGTTTTGCC
65 TGATGGTTTTGCCCTGGTC-AACCTATTTTCGACCAAGGTTTTGCC
917883 CTAGTCACCT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
130 42 0.46
131 46 0.50
132 4 0.04
ACGTcount: A:0.13, C:0.23, G:0.22, T:0.42
Consensus pattern (131 bp):
AGGTTTTGCCCTAGTCAACCTCTTTTTAACCCAGGTTTTGCCCTGGTCACTTGTAGGTTTGACGT
GATGGTTTTGCCCTGGTCAACCTATTTTCGACCAAGGTTTTGCCTTGGTCGATCTCTTTTTGACC
T
Found at i:917982 original size:126 final size:128
Alignment explanation
Indices: 917795--918110 Score: 336
Period size: 126 Copynumber: 2.4 Consensus size: 128
917785 TTGGTCAATC
** ** * * *
917795 TCTTTTTGACCCAGGTTTTGCCTTGGTCACCTTGTAGTTGACGTGATGGTTTTGCCCTGGTCAAA
1 TCTTTTTGACTTAGGTTTCACCTTGGTCA-CTTTTAGTTGACGTGATGGTTTCGCCTTGGTC-AA
* * * *
917860 CC-ATTTTCGACTTAGGTTTTGCCCTAGTCACCTTTTAGTTGACGTGATGGTTT-TCATAG-C-T
64 CCTATTTTCGACTTAGGTTTCGACCTAATCACCTTTTAGTTGACATGATGGTTTCTC-TAGTCAT
917921 -
128 G
*
917921 TCTTTTTGACTTAGGTTTCACCTTGGTCATCTTTTAGTTGACATGATGGTTTCGCCTTGGTCAAC
1 TCTTTTTGACTTAGGTTTCACCTTGGTCA-CTTTTAGTTGACGTGATGGTTTCGCCTTGGTCAAC
* * ** *
917986 CTCTTTTTGACTTAGGTTTCGACCTAATTGCCTTTTAGTTGACATGATGGTTTCGCTCTGGTCAA
65 CTATTTTCGACTTAGGTTTCGACCTAATCACCTTTTAGTTGACATGATGGTTT--CTCTAGTC-A
918051 TG
127 TG
* * * *
918053 TCTTTTAGACTTAGGTTTCACCCTGGTCACATTTTAGTTGACGTTATGGTTCCGCCTT
1 TCTTTTTGACTTAGGTTTCACCTTGGTCAC-TTTTAGTTGACGTGATGGTTTCGCCTT
918111 TTTAACTTAT
Statistics
Matches: 158, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
125 4 0.03
126 96 0.61
128 2 0.01
129 3 0.02
131 2 0.01
132 51 0.32
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.43
Consensus pattern (128 bp):
TCTTTTTGACTTAGGTTTCACCTTGGTCACTTTTAGTTGACGTGATGGTTTCGCCTTGGTCAACC
TATTTTCGACTTAGGTTTCGACCTAATCACCTTTTAGTTGACATGATGGTTTCTCTAGTCATG
Found at i:917996 original size:34 final size:31
Alignment explanation
Indices: 917921--918010 Score: 83
Period size: 34 Copynumber: 2.7 Consensus size: 31
917911 TTTCATAGCT
* *
917921 TCTTTTTGACTTAGGTTTCACCTTGGTCATC
1 TCTTTTTGACTGAGGTTTCACCTTGGTCACC
*
917952 T-TTTAGTTGACATGATGGTTTCGCCTTGGTCAACC
1 TCTTT--TTGAC-TGA-GGTTTCACCTTGGTC-ACC
*
917987 TCTTTTTGACTTAGGTTTCGACCT
1 TCTTTTTGACTGAGGTTTC-ACCT
918011 AATTGCCTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 12
0.73 0.08 0.19
Matches are distributed among these distances:
30 3 0.06
31 1 0.02
32 11 0.23
33 7 0.15
34 19 0.40
35 3 0.06
36 3 0.06
ACGTcount: A:0.14, C:0.21, G:0.19, T:0.46
Consensus pattern (31 bp):
TCTTTTTGACTGAGGTTTCACCTTGGTCACC
Found at i:918036 original size:192 final size:191
Alignment explanation
Indices: 917559--918103 Score: 484
Period size: 192 Copynumber: 2.8 Consensus size: 191
917549 GTTCCATCTA
* * *
917559 GTCATCTTTTTGTTGACATAATAGTTTGCCTTGGTCAACAT-TTTTTGACTTAAGTTTC-ACCCT
1 GTCATC-TTTTGTTGACAT-ATGGTTTGCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGA-CCT
** * * *
917622 GGTCATTTTTTAGTTGACATGAAGGTTTTGCCCTAGTC-AACCTTTTTTTA-ACCTAGGTTTTGC
63 GGTCACCTTTTAGTTGACATGATGGTTTTGCCCTGGTCAAACC---TTTTAGACTTAGGTTTTGC
* * *
917685 CCTGGTCA-TTTTTAGGTTTGACGTGATGGTTTTGCCCTGGTCGACCTCTTTTCTACCAAGGTTT
125 CCTGGTCACATTTTA-G-TTGACGTGATGGTTTT--CC-GATAGACCTCTTTTCTACCAAGGTTT
**
917749 TGCCTTG
185 CACCTTG
* * ** *
917756 GTCGATCTCTTT-TTGACCTA-GGTTTTGCCTTGGTCAATCTCTTTTTGACCCAGGTTTTG-CCT
1 GTC-ATCT-TTTGTTGACATATGG-TTTGCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGACC-
* * *
917818 TGGTCACCTTGTAGTTGACGTGATGGTTTTGCCCTGGTCAAACCATTTTCGACTTAGGTTTTGCC
62 TGGTCACCTTTTAGTTGACATGATGGTTTTGCCCTGGTCAAACC-TTTTAGACTTAGGTTTTGCC
* * * **
917883 CTAGTCACCTTTTAGTTGACGTGATGGTTTT-C-ATAG-CTTCTTTT-TGACTTAGGTTTCACCT
126 CTGGTCACATTTTAGTTGACGTGATGGTTTTCCGATAGACCTCTTTTCT-ACCAAGGTTTCACCT
917944 TG
190 TG
917946 GTCATCTTTTAGTTGACATGATGGTTTCGCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGACCT
1 GTCATCTTTT-GTTGACAT-ATGGTTT-GCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGACCT
** ** * * ** **
918011 AATTGCCTTTTAGTTGACATGATGGTTTCGCTCTGGTCAATGTCTTTTAGACTTAGGTTTCACCC
63 GGTCACCTTTTAGTTGACATGATGGTTTTGCCCTGGTCAA-ACCTTTTAGACTTAGGTTTTGCCC
*
918076 TGGTCACATTTTAGTTGACGTTATGGTT
127 TGGTCACATTTTAGTTGACGTGATGGTT
918104 CCGCCTTTTT
Statistics
Matches: 284, Mismatches: 47, Indels: 39
0.77 0.13 0.11
Matches are distributed among these distances:
188 3 0.01
189 5 0.02
190 29 0.10
191 6 0.02
192 107 0.38
193 4 0.01
195 1 0.00
196 38 0.13
197 76 0.27
198 15 0.05
ACGTcount: A:0.16, C:0.20, G:0.20, T:0.43
Consensus pattern (191 bp):
GTCATCTTTTGTTGACATATGGTTTGCCTTGGTCAACCTCTTTTTGACTTAGGTTTCGACCTGGT
CACCTTTTAGTTGACATGATGGTTTTGCCCTGGTCAAACCTTTTAGACTTAGGTTTTGCCCTGGT
CACATTTTAGTTGACGTGATGGTTTTCCGATAGACCTCTTTTCTACCAAGGTTTCACCTTG
Found at i:919361 original size:5 final size:5
Alignment explanation
Indices: 919351--919376 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
919341 TAATTTTGAA
919351 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
919377 TAAGTAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:929906 original size:20 final size:20
Alignment explanation
Indices: 929875--929933 Score: 84
Period size: 20 Copynumber: 3.0 Consensus size: 20
929865 GCCACCCTAA
929875 GTGAAATGTATCGATACATG
1 GTGAAATGTATCGATACATG
*
929895 G-GACATTGTATCGATACATG
1 GTGA-AATGTATCGATACATG
*
929915 GTGAAAAGTATCGATACAT
1 GTGAAATGTATCGATACAT
929934 TGTGCCCAAC
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.06
20 30 0.88
21 2 0.06
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (20 bp):
GTGAAATGTATCGATACATG
Found at i:930976 original size:162 final size:164
Alignment explanation
Indices: 930704--931004 Score: 419
Period size: 162 Copynumber: 1.8 Consensus size: 164
930694 AAGGTTACAG
* * * *
930704 GGATACTTTTATGTCAAAGGTATACCTATAGGGGCATTTTTATAATTTTTCTAGAACTAAGTCCT
1 GGATACTTTTATGTCAAAGGTATACCCATAGAGGCATTTTCATAATTTTTCTAGAACCAAGTCCT
* * * * * **
930769 AGGTTGTCACCAGGATGCTTTTATGTCGAAGGTGAGTGTTTAGGATAGATTCATCCC-ATTTATG
66 AAGTTGTCACCAAGATGCTTTTATGCCAAAGATGAGTACTTAGGATAGATTCA-CCCTATTTATG
930833 A-C-TTTTAAATCTTTAAGTCTTTTAACGTTATGA
130 ATCGTTTTAAATCTTTAAGTCTTTTAACGTTATGA
* *
930866 GGATACTTTTGTGTCAAAGGTATACCCATAGAGGTATTTTCATAATTTTTCTAGAACCAAGTCCT
1 GGATACTTTTATGTCAAAGGTATACCCATAGAGGCATTTTCATAATTTTTCTAGAACCAAGTCCT
* ** *
930931 AAGTTGTCATCAAGATGCTTTTATGCCAAAGATGTTTACTTAGGATAGGTTCACCCTATTTATGA
66 AAGTTGTCACCAAGATGCTTTTATGCCAAAGATGAGTACTTAGGATAGATTCACCCTATTTATGA
930996 TCGTTTTAA
131 TCGTTTTAA
931005 GGTCCATTAG
Statistics
Matches: 119, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
161 3 0.03
162 109 0.92
163 1 0.01
164 6 0.05
ACGTcount: A:0.28, C:0.15, G:0.18, T:0.39
Consensus pattern (164 bp):
GGATACTTTTATGTCAAAGGTATACCCATAGAGGCATTTTCATAATTTTTCTAGAACCAAGTCCT
AAGTTGTCACCAAGATGCTTTTATGCCAAAGATGAGTACTTAGGATAGATTCACCCTATTTATGA
TCGTTTTAAATCTTTAAGTCTTTTAACGTTATGA
Found at i:932481 original size:63 final size:63
Alignment explanation
Indices: 932382--932515 Score: 259
Period size: 63 Copynumber: 2.1 Consensus size: 63
932372 CTTCTAAGGA
932382 GTTAGCCTTTGTCTGGGCTAGTGAAAAGCCAACCGAGTGTAAATTCCTATGTTTGCTTGAGGT
1 GTTAGCCTTTGTCTGGGCTAGTGAAAAGCCAACCGAGTGTAAATTCCTATGTTTGCTTGAGGT
*
932445 GTTAGCCTTTTTCTGGGCTAGTGAAAAGCCAACCGAGTGTAAATTCCTATGTTTGCTTGAGGT
1 GTTAGCCTTTGTCTGGGCTAGTGAAAAGCCAACCGAGTGTAAATTCCTATGTTTGCTTGAGGT
932508 GTTAGCCT
1 GTTAGCCT
932516 CGTTATAGGC
Statistics
Matches: 70, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 70 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (63 bp):
GTTAGCCTTTGTCTGGGCTAGTGAAAAGCCAACCGAGTGTAAATTCCTATGTTTGCTTGAGGT
Found at i:937318 original size:159 final size:156
Alignment explanation
Indices: 935182--937324 Score: 696
Period size: 159 Copynumber: 13.7 Consensus size: 156
935172 ATCTTAGTAA
* * * ** * * * *
935182 GGAGAACGTGTTTATGGTACCCAAACTCAAAAAG-ATGGAGATTGTTACGACAATCCAAGTTTGT
1 GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
* * * * * * * * ** *
935246 CTTATTTGAGGG-TCAAACTCTGATTCTATCAAAAATAGTGGAAAAAAGAGTTTTTCTTGTGATA
66 CTCATTTAAGGGAT-GAACTTTGATTCTATGAAAAATGGTGGAAGAAA-AG-CTTTCTTGCAAAA
* * * *
935310 -CAACGTATCAATGTCATGTATCCTAATAAA
128 CCAAAGCATCAATATCATGTATCCT-A-AAG
* * * * * * * * * *
935340 GG-GAA-GTGTTTTTGGTTCCCAATCTCGAAAAGAATAGAGACTATTAGGAAAATCCATGTTTAT
1 GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
* * * * * *
935403 CTC-TTCTAGGGGATGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGCTTTCCT-CACGA
66 CTCATT-TAAGGGATGAACTTTGATTCTATGAAAAAT-GGTG-GAAGAAAAGCTTTCTTGCA--A
* * * * *
935465 AAGCAAATCATCAATATCTTGTATTCTAAGAA
126 AACCAAAGCATCAATATCATGTATCCTAA-AG
* ** * * * * * ** ** *
935497 AGAGAACATGTTTATGATGCCCAATCATGAAAAAAATGAAGATCGTTACTAGAATCCATGTTTGT
1 GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
* * ** * * * *
935562 CTCATTTGAGGGATGAACTTAGACTT-TACAAAAAATAGTGGAAAGAAAAAGCCTTTCCTACGAA
66 CTCATTTAAGGGATGAACTTTGA-TTCTATGAAAAATGGTGG-AAG-AAAAG-CTTTCTTGCAAA
*** ** * *
935626 ATTGAAGCATCAATATTGTGTATCTTAATG
127 ACCAAAGCATCAATATCATGTATCCTAAAG
* * * * * ** * *
935656 AGAAGAATGTGTTTATGGTGCCTAAACTTTAAAAAAATGCCGATTATTATGCGAATCCATGTTTG
1 -GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
* * * * * *
935721 TCTCATTTAAGAGAAGAACTTCGATTCTATGGAAGATGGTGGTAA-AGAAAGCATTCCTTGCAAA
65 TCTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGTGG-AAGA-AAAGC-TTTCTTGCAAA
* * * *
935785 GCCAAACCATCAATGTCATG-AT-CTCAA-
127 ACCAAAGCATCAATATCATGTATCCTAAAG
** * * * * * * * * * *
935812 TTAGGA--T-TTT-GGGTGCCCT-TTCATGAAAAGAATGGAGACTATTATGAGAATACATGTTTA
1 GGAGAATGTGTTTATGGT-ACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
** ** * * * * ** * * *
935872 TCTCATTTGCGGGACAAACATTGATTTTAAGGAAAATAGGTCAAAGAAAACCTTTTCTAGCAAAG
65 TCTCATTTAAGGGATGAACTTTGATTCTATGAAAAAT-GGTGGAAGAAAAGC-TTTCTTGCAAAA
*
935937 CCAAAGCATCAATATC--G-A---T-GA-
128 CCAAAGCATCAATATCATGTATCCTAAAG
* * * ** * * * * *
935958 GGAGAACGTGTTTATGGTGCCCAA-CGAAGAAAAG-ATGGAGATTATTATGATAATCGAAGTTTG
1 GGAGAATGTGTTTATGGTACCTAATC-TTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
* * * * **
936021 TCTCATTTGAGGGA-CATACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAGC
65 TCTCATTTAAGGGATGA-ACTTTGATTCTATGAAAAATGGTGG-AAGAAAAGC-TTTCTTGCAAA
* * * *
936085 GCCAAAGCATCAATGTCATTTATCCTAATGAA
127 ACCAAAGCATCAATATCATGTATCCTAA--AG
* * * * * * * ** * * *
936117 GG-GAATGGGTTTGTGATTCCCAATCTCGAAAA-AGTGGTAACTATTATGAGAATCCATGTTTAT
1 GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
* * * * * * *
936180 CTCATTTATGGGATGAACTTTCATTATAAGTAAAATGG-GGCAAAAAAAGCTTTTCTTGCAAAAG
66 CTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGTGG-AAGAAAAGC-TTTCTTGCAAAAC
* *
936244 CAAATCGTCAATATCATGTATCCTCATAAG
129 CAAAGCATCAATATCATGTATCCT-A-AAG
* * * *** * ** **** * **
936274 GAAAAATATACCTATGGTGCAC-AATC-ACATAAAGAAAAAAGATTGTTATTAGAATCCATGTTT
1 GGAGAATGTGTTTATGGTAC-CTAATCTTGA-AAAGAATGGGGATTATTACGAGAATCCATGTTT
* * * * * **
936337 GTCTAATTTGAGGCATGAACTTAGACTCTAT-AGAAAATGGTGGGAA-AAAAGCCTTTCTTGTGA
64 GTCTCATTTAAGGGATGAACTTTGATTCTATGA-AAAATGGT-GGAAGAAAAG-CTTTCTTGCAA
* * *
936400 AACCAAAGCATCAATATCGTGTAT-CTTATG
126 AACCAAAGCATCAATATCATGTATCCTAAAG
* * * * * *
936430 GGAAGAATGTGTTTACGGTGCCTAATCTTCAAAAGAATGGGGATTGTTATGAGAATCCATGTTAG
1 GG-AGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
* * * *
936495 TCTTATTTAAGAGATGTACTTTGACTCTATGAAAAATGGTGGCAA-AGAAAGCTTTCCTTTTGCA
65 TCTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGTGG-AAGA-AAAGCTTT-C--TTGCA
** * * * *
936559 AAGTCAAACCATCAA-ATTCGTGCATCC-CAA-
125 AAACCAAAGCATCAATA-TCATGTATCCTAAAG
* * ** ** * * *
936589 TGAGGA--T-TTT-TGGTACCTAATC-ACAGAAAGAATGATGACTATTACAAGAATTCATGTTTG
1 GGAGAATGTGTTTATGGTACCTAATCTTGA-AAAGAATGGGGATTATTACGAGAATCCATGTTTG
* * * * * * * *
936649 TCTTATTTGAGTG-TCGAACTTTGATTTTAAGGAAAATAGG-GCAAAGAAAAGCTTTCCTTGTAA
65 TCTCATTTAAGGGAT-GAACTTTGATTCTATGAAAAAT-GGTG-GAAGAAAAGCTTT-CTTGCAA
* * *
936712 AAGCAAATCATCAATATCATGTATCTTAATTA-
126 AACCAAAGCATCAATATCATGTATCCTAA--AG
* * * ** * * * * * *
936744 GGAGATTGTGTTTATGGTGCTTAA-CCAGAAAAG-ATGGAGATTGTTACGACAATCTAAGTTAGT
1 GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
* * * * *
936807 CTCATTTGAA-GGA-CATACTTTGTTTCTATCAGAAATGGTGGAAAGAAAA-CTTTTTCTTGCAG
66 CTCATTT-AAGGGATGA-ACTTTGATTCTATGAAAAATGGTGG-AAGAAAAGC--TTTCTTGCAA
* * *
936869 CACCAAAGCATCAATGTCATGTATCCCAATGAAG
126 AACCAAAGCATCAATATCATGTAT-CC--TAAAG
* * * * * * * *
936903 GGA-ACATGT-TTT-TGGTTCCCAATCTCGAAAAAAATGGGTACTGTTATGAGAATCCATGTTTG
1 GGAGA-ATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
* * * * * * * *
936965 TCTTATTCATGGGATGAACTTTGATTTTA-AAGAAAATGGAGCAAAGAAAAGCTTTCTTTACAAA
65 TCTCATTTAAGGGATGAACTTTGATTCTATGA-AAAATGGTG-GAAGAAAAGCTTTC-TTGCAAA
** * * * *
937029 AGTAAATCATCAATATCGTGTATCCTGATG
127 ACCAAAGCATCAATATCATGTATCCTAAAG
* * * * *** * *
937059 AGGAGAATGTGTCTATGGTGAAC-AATCATAAAAAGAATGAAAATCATTACGACAATCCATGTTT
1 -GGAGAATGTGTTTATGGT-ACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTT
* * * * **
937123 GTCTCATTTGAGGTACGAACTTTGACTCTACAAAAAATGGTAGGAAGAAAAGCCTTTCTTGCAAA
64 GTCTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGT-GGAAGAAAAG-CTTTCTTGCAAA
937188 ACCAAAGCATCAATATCATGTATCCTAAAG
127 ACCAAAGCATCAATATCATGTATCCTAAAG
* * *
937218 GGAAGAATGTGTTTATGGTACCTAATTTTGAAAAGAATGGGGATTATTATGATAATCCATGTTTG
1 GG-AGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTG
*** * *
937283 TCTCATTTAAAAAATAAACTTTGATTCTATGAAAAACGGTGG
65 TCTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGTGG
937325 TAAAAGCTTT
Statistics
Matches: 1443, Mismatches: 431, Indels: 222
0.69 0.21 0.11
Matches are distributed among these distances:
146 4 0.00
147 1 0.00
148 5 0.00
149 91 0.06
150 10 0.01
151 90 0.06
152 34 0.02
153 6 0.00
154 77 0.05
155 14 0.01
156 46 0.03
157 273 0.19
158 177 0.12
159 454 0.31
160 150 0.10
161 10 0.01
162 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
GGAGAATGTGTTTATGGTACCTAATCTTGAAAAGAATGGGGATTATTACGAGAATCCATGTTTGT
CTCATTTAAGGGATGAACTTTGATTCTATGAAAAATGGTGGAAGAAAAGCTTTCTTGCAAAACCA
AAGCATCAATATCATGTATCCTAAAG
Found at i:942617 original size:158 final size:158
Alignment explanation
Indices: 941687--942618 Score: 555
Period size: 158 Copynumber: 6.0 Consensus size: 158
941677 CCCCATGACA
* * * * * * *
941687 CAATCACGAAAGGAATGAAAATCATTACTAGAATTCATGTTTGTCTCATTTGAGGCACGAACTTA
1 CAATCATGAAAAGAATGGAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTT
* * * * * *
941752 GACTCTATGAAAAATGATGGAAAAAAAGCCTTTT-TTATGAAACCAAAGCATCAATATCACGTAT
66 GATTCTAAGAAAAATGGTGGAAGAAAAG-CTTTTCTTATAAAACCAAAGCATCAATATCATGTAT
** *
941816 CCTAATGGGAAGAATGTGTTTATGGTACC
130 CCTAATAAGAAGAATGTGTTTATGGTGCC
* * * * * * ** *
941845 TAATC-TTAAAAGAATGGGGATTATTA-TGAGAATCTATGTTTGTCTCATTTAAGAAATGAAATT
1 CAATCATGAAAAGAATGGAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * * * * *** * * *
941908 TGATTCTATGAAAAACGGTGGTAAAAAAAGCTTTTCCT-GAAAGGAAAACCATCAATGTCATGGA
65 TGATTCTAAGAAAAATGGTGG-AAGAAAAGCTTTTCTTATAAAACCAAAGCATCAATATCATGTA
* ***
941972 T-CTCAATAAG--G-A--T-TTT-CGGCATC
129 TCCT-AATAAGAAGAATGTGTTTATGGTGCC
* * * * * * **
941995 CAATCACGAAAAGAATGGATA-CTATTACAAGAATCCATGTTTGTCTCTTTTAAGGGACAAACTT
1 CAATCATGAAAAGAATGGAGATC-ATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT
* * ** * * *
942059 TGATTTTAAGGAAAATAGGTCAAAGAAAAGCTTTTCCTATGAAGCCAAAGCATCAATATC--G-A
65 TGATTCTAAGAAAAAT-GGTGGAAGAAAAGCTTTTCTTATAAAACCAAAGCATCAATATCATGTA
* * *
942121 T--GAA-AAGAA-CAT-T-TTTGTGGTGCC
129 TCCTAATAAGAAGAATGTGTTTATGGTGCC
* * ** * * *** * * *
942145 TAATCAAGAAAAG-ATGGAGATTGTTACAACAATCCAACCTTGTTTAATTTGAGGGATGAACTTT
1 CAATCATGAAAAGAATGGAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTT
* ** *
942209 GATTCTAACAAAAATGGTGGAAAGAAAAG-TTCTTCTTGCAACACCAAAGCATCAAT-TCATGTA
66 GATTCTAAGAAAAATGGTGG-AAGAAAAGCTT-TTCTTATAAAACCAAAGCATCAATATCATGTA
* * * *
942272 TCCCAATGAAG-GGAACGTGCTTT-TGGTTCC
129 TCCTAAT-AAGAAGAATGTG-TTTATGGTGCC
*
942302 CAATC-TCGAAAAGAATGGAGA-CTATTA-TGAGAATCCATGTTTGTCTCATTT-AGGAGATGAA
1 CAATCAT-GAAAAGAATGGAGATC-ATTACT-AGAATCCATGTTTGTCTCATTTGAGG-CATGAA
* * * * * * * * *
942363 CTTTGATTTTAAGGAAAATGAG-GCAAAGAAAAGCTTGAT-TTGTGAAAGCAAATCAACAATATC
62 CTTTGATTCTAAGAAAAATG-GTG-GAAGAAAAGCTT-TTCTTATAAAACCAAAGCATCAATATC
* * *
942426 GTGTATCCTAATGAGAAGAATGGGTTTATGGTGCC
124 ATGTATCCTAATAAGAAGAATGTGTTTATGGTGCC
* * * * *
942461 CAATCATGAAAAGAATGAAGATCATTACTAGAATCTATGTTTGTCTTATTTGAGCCATGAACTTA
1 CAATCATGAAAAGAATGGAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTT
* * * *
942526 GACTCTATGAAAAATGGTGGAAGAAAAGCCTTTT-TTACAAAATCAAAGCATCAATATCATGTAT
66 GATTCTAAGAAAAATGGTGGAAGAAAAG-CTTTTCTTATAAAACCAAAGCATCAATATCATGTAT
*
942590 CATAATAAGAAGAATGTGTTTATGGTGCC
130 CCTAATAAGAAGAATGTGTTTATGGTGCC
942619 TCATTTAAAA
Statistics
Matches: 580, Mismatches: 149, Indels: 90
0.71 0.18 0.11
Matches are distributed among these distances:
146 3 0.01
147 2 0.00
148 8 0.01
149 81 0.14
150 24 0.04
151 75 0.13
152 19 0.03
153 2 0.00
154 1 0.00
155 5 0.01
156 4 0.01
157 105 0.18
158 153 0.26
159 93 0.16
160 5 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
CAATCATGAAAAGAATGGAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTT
GATTCTAAGAAAAATGGTGGAAGAAAAGCTTTTCTTATAAAACCAAAGCATCAATATCATGTATC
CTAATAAGAAGAATGTGTTTATGGTGCC
Found at i:943603 original size:144 final size:144
Alignment explanation
Indices: 943336--943607 Score: 352
Period size: 144 Copynumber: 1.9 Consensus size: 144
943326 AGAGAAAAAA
* * *
943336 TTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGCAAAGCCAAACCATTAATGTCATG
1 TTTGATTCTATGAAAAATGATGGTAAAAAAAGCTTTTCCTGCAAAGCCAAACCATTAATGTCAAG
*** * * * **
943401 TATTTGAATGAGGATTTTTGGTGCCGAATCATGAAAAGAATGGAGAATATAGTTAGAATCCATGT
66 TATCCCAATGAGGAATTTTGATCCCGAATCATGAAAAGAATGGAGAATATAGCAAGAATCCATGT
943466 TTGTCTTATTAAAC
131 TTGTCTTATTAAAC
* * ** *
943480 TTTGATTCTATGAAAAATGATGGTTAAAAATGCTTTTCCTGGGAAGCCAAACCATTAGTGTCAAG
1 TTTGATTCTATGAAAAATGATGGTAAAAAAAGCTTTTCCTGCAAAGCCAAACCATTAATGTCAAG
943545 TATCCCAATGAGGAATTTTGATACCCG-ATCATGAAAAGAATGGAGACCAT-TA-CAAGAATCCA
66 TATCCCAATGAGGAATTTTGAT-CCCGAATCATGAAAAGAATGGAGA--ATATAGCAAGAATCCA
943607 T
128 T
943608 ATTTACCTCA
Statistics
Matches: 109, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
144 102 0.94
145 5 0.05
146 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (144 bp):
TTTGATTCTATGAAAAATGATGGTAAAAAAAGCTTTTCCTGCAAAGCCAAACCATTAATGTCAAG
TATCCCAATGAGGAATTTTGATCCCGAATCATGAAAAGAATGGAGAATATAGCAAGAATCCATGT
TTGTCTTATTAAAC
Found at i:947344 original size:27 final size:27
Alignment explanation
Indices: 947309--947364 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
947299 ATTTTGGAAA
*
947309 GTGGTGTTGGAGTATCCCCTCAAAGAG
1 GTGGGGTTGGAGTATCCCCTCAAAGAG
* **
947336 GTGGGGTTGGTGTATCCTTTCAAAGAG
1 GTGGGGTTGGAGTATCCCCTCAAAGAG
947363 GT
1 GT
947365 AAGGTTGAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.20, C:0.14, G:0.36, T:0.30
Consensus pattern (27 bp):
GTGGGGTTGGAGTATCCCCTCAAAGAG
Found at i:947370 original size:27 final size:27
Alignment explanation
Indices: 947314--947371 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
947304 GGAAAGTGGT
**
947314 GTTGGAGTATCCCCTCAAAGAGGTGGG
1 GTTGGAGTATCCCCTCAAAGAGGTAAG
* **
947341 GTTGGTGTATCCTTTCAAAGAGGTAAG
1 GTTGGAGTATCCCCTCAAAGAGGTAAG
947368 GTTG
1 GTTG
947372 AAGCATCTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.34, T:0.29
Consensus pattern (27 bp):
GTTGGAGTATCCCCTCAAAGAGGTAAG
Found at i:950161 original size:36 final size:37
Alignment explanation
Indices: 950114--950196 Score: 132
Period size: 36 Copynumber: 2.3 Consensus size: 37
950104 AACTTGAGCA
*
950114 GGCTTTAACTCAGACTAGGTTGCCACCAACTTATGT-
1 GGCTTTGACTCAGACTAGGTTGCCACCAACTTATGTG
* *
950150 GGCTTTGACTCAGACTAGGTTGCCACCCACTTGTGTG
1 GGCTTTGACTCAGACTAGGTTGCCACCAACTTATGTG
950187 GGCTTTGACT
1 GGCTTTGACT
950197 TAGGTGCCGC
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
36 33 0.77
37 10 0.23
ACGTcount: A:0.19, C:0.25, G:0.24, T:0.31
Consensus pattern (37 bp):
GGCTTTGACTCAGACTAGGTTGCCACCAACTTATGTG
Found at i:950340 original size:27 final size:28
Alignment explanation
Indices: 950301--950354 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
950291 TAAATATGGC
950301 AGGTGCCACTAA-TTGT-AGACTTTGAAG
1 AGGTGCCACTAATTTGTGAG-CTTTGAAG
*
950328 AGGTGCCATTAATTTGTGAGCTTTGAA
1 AGGTGCCACTAATTTGTGAGCTTTGAA
950355 AGGATTCGAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 11 0.46
28 11 0.46
29 2 0.08
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.33
Consensus pattern (28 bp):
AGGTGCCACTAATTTGTGAGCTTTGAAG
Found at i:950610 original size:28 final size:28
Alignment explanation
Indices: 950578--950640 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
950568 GACTCTAATG
* *
950578 GGGATTGTG-ATTCATCTTAGTTCCACTA
1 GGGATTGTGAATT-ATCCTAATTCCACTA
*
950606 GGGATTG-GAATTTTCCTAATTCCACTA
1 GGGATTGTGAATTATCCTAATTCCACTA
950633 GGGATTGT
1 GGGATTGT
950641 AGGTTGTCCA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 20 0.67
28 10 0.33
ACGTcount: A:0.22, C:0.16, G:0.24, T:0.38
Consensus pattern (28 bp):
GGGATTGTGAATTATCCTAATTCCACTA
Found at i:950729 original size:99 final size:99
Alignment explanation
Indices: 950432--950749 Score: 539
Period size: 99 Copynumber: 3.2 Consensus size: 99
950422 CGATTCATCT
* * ** * *
950432 ACTAGGGATTGTAGGTTGTCCACTGGGGGTTGTAGATAGACTTTAATGGGGATTGTGATTCGTCT
1 ACTAGGGATTGTAGGTTGTCCACTAGGGATTACAGATAGACTCTAATGGGGATTGTGATTCATCT
950497 TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
66 TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
* *
950531 ACTTGGGATTGTAGGTTGTCCACTATGGATTACAGAT-GACTCTAATGGGGATTGTGATTCATCT
1 ACTAGGGATTGTAGGTTGTCCACTAGGGATTACAGATAGACTCTAATGGGGATTGTGATTCATCT
950595 TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
66 TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
950629 ACTAGGGATTGTAGGTTGTCCACTAGGGATTACAGATAGACTCTAATGGGGATTGTGATTCATCT
1 ACTAGGGATTGTAGGTTGTCCACTAGGGATTACAGATAGACTCTAATGGGGATTGTGATTCATCT
* *
950694 TGGTACCACTAGGGATTGGAATTTTCCTAATTCC
66 TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
950728 ACTAGGGATTGTAGGTTGTCCA
1 ACTAGGGATTGTAGGTTGTCCA
950750 GGCTCCACTG
Statistics
Matches: 206, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
98 94 0.46
99 112 0.54
ACGTcount: A:0.23, C:0.15, G:0.26, T:0.35
Consensus pattern (99 bp):
ACTAGGGATTGTAGGTTGTCCACTAGGGATTACAGATAGACTCTAATGGGGATTGTGATTCATCT
TAGTTCCACTAGGGATTGGAATTTTCCTAATTCC
Found at i:950765 original size:28 final size:28
Alignment explanation
Indices: 950725--950792 Score: 100
Period size: 28 Copynumber: 2.4 Consensus size: 28
950715 TTTTCCTAAT
* *
950725 TCCACTAGGGATTGTAGGTTGTCCAGGC
1 TCCACTAGGGATTGCAGGTTGTCCAGAC
* *
950753 TCCACTGGGGATTGCAGGTTGTCTAGAC
1 TCCACTAGGGATTGCAGGTTGTCCAGAC
950781 TCCACTAGGGAT
1 TCCACTAGGGAT
950793 ACGACATAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.19, C:0.22, G:0.31, T:0.28
Consensus pattern (28 bp):
TCCACTAGGGATTGCAGGTTGTCCAGAC
Found at i:954406 original size:103 final size:102
Alignment explanation
Indices: 954253--954508 Score: 343
Period size: 103 Copynumber: 2.5 Consensus size: 102
954243 TTTAAAAATG
* * * * * * *
954253 GGGTTGGAGTATCCTCTCGGAAGATGGGGTTGGAGTATCCCCATGGATAACAAATAATCTTGACA
1 GGGTTGGAGTATCCCCTCGAAAGGTGAGGTTGGAGTATCCTCGTGAATAACAAATAATCTTGACA
* *
954318 AA-AAAGGAGTTCAAATCTTGATAAATTTTGCAGAGTA
66 AAGAAA-GAGTTCAAATCTAGATAAATTTTGAAGAGTA
* *
954355 GGGTTGGAGTATCCCCTCGAAAGGTCGAGGTTGGAGTATCCTCGTGTATAACAAATAATTTTGAC
1 GGGTTGGAGTATCCCCTCGAAAGGT-GAGGTTGGAGTATCCTCGTGAATAACAAATAATCTTGAC
* *
954420 AAAGGAAGAGTTCAAATCTAGATAAATTTTGAAGAGTG
65 AAAGAAAGAGTTCAAATCTAGATAAATTTTGAAGAGTA
* *
954458 GGGTTGGAGTATCTCCTTGAAAGGTTGAGGTTGGAGTATCCTCGTGAATAA
1 GGGTTGGAGTATCCCCTCGAAAGG-TGAGGTTGGAGTATCCTCGTGAATAA
954509 AATTTTGATA
Statistics
Matches: 136, Mismatches: 15, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
102 22 0.16
103 111 0.82
104 3 0.02
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (102 bp):
GGGTTGGAGTATCCCCTCGAAAGGTGAGGTTGGAGTATCCTCGTGAATAACAAATAATCTTGACA
AAGAAAGAGTTCAAATCTAGATAAATTTTGAAGAGTA
Found at i:965389 original size:151 final size:152
Alignment explanation
Indices: 965216--965620 Score: 429
Period size: 152 Copynumber: 2.7 Consensus size: 152
965206 GATTGTTTTG
* * *
965216 AGAATCCATGTTAGTCTTATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAG
1 AGAATCCATATTTGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAG
* *
965281 TTTTTCTTGCAAAGCCAAACCATCAATGT-ATGTATCCAAATGAGGATTTTTAGTGAAAAATCAC
66 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCAAATGAGGAATTTTAGTGAAAAATCAC
*
965345 AAAAAGAATGGAGACTATTACA
131 AAAAAGAATGGAGACCATTACA
* *
965367 AGAATCCTTATTTGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTTAAAAAAG
1 AGAATCCATATTTGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAG
** * * * * * **** *
965432 CTTTTCTTGTGAAGCCAAACCATCAGTGTCATGTCTCCCAATGAGTAATTTTGGTGCCCCATCAT
66 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCAAATGAGGAATTTTAGTGAAAAATCAC
* *
965497 GACAAGAATGGAGACCATTACA
131 AAAAAGAATGGAGACCATTACA
** * * **** * *
965519 AGAATCCATATTTACCTCATTTGAGGGATGGGCTTTGAATT-TAAGAAAAATGG-GCTAAAGAAA
1 AGAATCCATATTTGTCTCATTTAAGAGACAAACTTTG-ATTCTATGAAAAATGGTGGTAAA-AAA
* ** * * *
965582 TGCTTTTCTTGTGAAGTCAAAGCATCAATGCCATGTATC
64 AGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATC
965621 ATTATAAGTA
Statistics
Matches: 211, Mismatches: 40, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
151 89 0.42
152 119 0.56
153 3 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (152 bp):
AGAATCCATATTTGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAG
CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCAAATGAGGAATTTTAGTGAAAAATCAC
AAAAAGAATGGAGACCATTACA
Found at i:967595 original size:158 final size:159
Alignment explanation
Indices: 967395--967777 Score: 389
Period size: 158 Copynumber: 2.4 Consensus size: 159
967385 GATTTTAAGG
* * * * *
967395 AAAATAG-GGCAAAGAAAGCTTTTCTTGTGAAAGCAAATCATCAATATCATGTATCCTAATGAGG
1 AAAATAGTGGCAAAAAAAGCCTTTCTTGTAAAACCAAACCATCAATATCATGTATCCTAATGAGG
* * * *
967459 ATAATGTGTTTATAGTGCCCAAT-AATGAAAAAAT-TAAGATCGTTATTA-AATCCATGTTTGTC
66 ATAATGTGTTTATAGTGCCCAATCAATCAAAAAATAT-AGATCATTATGAGAATCCATGTTAGTC
* *
967521 TCATTTGAAGGATGAACTTAGACTCTACGA
130 TCATTTAAAAGATGAACTTAGACTCTACGA
* * * * * *
967551 AAAATGGTGGGAAGAAAAAGCCTTTCTTGTAAAACCAAAGCATCAATATCGTGTATCCTAGTGAT
1 AAAATAGTGGCAA-AAAAAGCCTTTCTTGTAAAACCAAACCATCAATATCATGTATCCTAATGAG
* * * ** * * *
967616 GAGAATGTGTTTATGGTGCCTAATCTTTCAAAAAATATGGATTATTATGAGAATCCATGTTAGTT
65 GATAATGTGTTTATAGTGCCCAATCAATCAAAAAATATAGATCATTATGAGAATCCATGTTAGTC
* * * *
967681 TTATTTAAAAGATGAACTTTGATTCTATGA
130 TCATTTAAAAGATGAACTTAGACTCTACGA
* * * * * *
967711 AAAATAGTGGCAAAGAAAG-CTTTCCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATAAG
1 AAAATAGTGGCAAAAAAAGCCTTT-CTTGTAAAACCAAACCATCAATATCATGTATCCTAATGAG
967775 GAT
65 GAT
967778 TTTTGGTGCC
Statistics
Matches: 180, Mismatches: 41, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
156 6 0.03
157 4 0.02
158 68 0.38
159 54 0.30
160 48 0.27
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (159 bp):
AAAATAGTGGCAAAAAAAGCCTTTCTTGTAAAACCAAACCATCAATATCATGTATCCTAATGAGG
ATAATGTGTTTATAGTGCCCAATCAATCAAAAAATATAGATCATTATGAGAATCCATGTTAGTCT
CATTTAAAAGATGAACTTAGACTCTACGA
Found at i:968253 original size:159 final size:155
Alignment explanation
Indices: 967302--968613 Score: 474
Period size: 159 Copynumber: 8.4 Consensus size: 155
967292 CCATTAAAGG
* * ** ***
967302 GAATGTGTTTTTGGTTCCTTATCTTGAAAAGAATGGAGACTATTATGGGAATCC-TCATTTGTCT
1 GAATGTGTTTATGGTGCCCAATCTTGAAAAGAA--GAGACTATTACAAGAATCCAT-ATTTGTCT
** * * * * ** *
967366 CATTTAAGGGATAAACTTTGATTT-TAAGGAAAATAGGGCAA-AGAAAGCTTTTCTTGTGAAAGC
63 CATTTAAGTAATGAACTTTGATTTCTAAGAAAAAGAGGG-AAGA-AAAGCTTTTCCTGCAAAAAC
*
967429 AAATCATCAATATCATGTATCCTAATGAGGA
126 AAAGCATCAATATCATGTATCCTAATGA-GA
* * ** * * ** *
967460 TAATGTGTTTATAGTGCCCAATAATGAAAA-AATTAAGA-TCGTTATTA-AATCCATGTTTGTCT
1 GAATGTGTTTATGGTGCCCAATCTTGAAAAGAA--GAGACT-ATTACAAGAATCCATATTTGTCT
* * * * * * * *
967522 CATTTGAAG-GATGAACTTAGA-CTCTACGAAAAATGGTGGGAAGAAAAAGCCTTTCTTGTAAAA
63 CATTT-AAGTAATGAACTTTGATTTCTAAGAAAAA--GAGGGAAG-AAAAGCTTTTCCTGCAAAA
* * *
967585 CCAAAGCATCAATATCGTGTATCCTAGTGATGA
124 ACAAAGCATCAATATCATGTATCCTAATGA-GA
* * * * ** * * *
967618 GAATGTGTTTATGGTGCCTAATCTTTCAAAA-AATATGGATTATTATGAGAATCCATGTTAGTTT
1 GAATGTGTTTATGGTGCCCAATC-TTGAAAAGAAGA--GACTATTACAAGAATCCATATTTGTCT
* * * *
967682 TATTTAA-AAGATGAACTTTGA-TTCTATGAAAAATAGTGGCAA-AGAAAGC-TTTCCTTGCAAA
63 CATTTAAGTA-ATGAACTTTGATTTCTAAGAAAAAGAG-GG-AAGA-AAAGCTTTTCC-TGCAAA
** * * *
967743 GCCAAACCATCAATGTCATGTATCCCAAT-A-A
123 AACAAAGCATCAATATCATGTATCCTAATGAGA
* * * * * * *
967774 GGA--T-TTT-TGGTGCCCGAT-TATGAAAAGAATGGGGACTATTATAAGAATCTATGTTTATCT
1 GAATGTGTTTATGGTGCCCAATCT-TGAAAAGAA--GAGACTATTACAAGAATCCATATTTGTCT
** ** * * * **
967834 CATTTAAGGGATGAACTTTGACTTTC-AAGAAAATAG-GTCAAAGACAAGCTTTTCTTACAAAGC
63 CATTTAAGTAATGAACTTTGA-TTTCTAAGAAAA-AGAG-GGAAGAAAAGCTTTTCCTGCAAAAA
*
967897 CAAAGCATCAATATC--G-A---TGA--AGA
125 CAAAGCATCAATATCATGTATCCTAATGAGA
* *** ** * ** *
967920 GAACGTGTTTATGGTGCTTGATCAAGGGAAAATG--GAGATTATTATGACAATCCA-AGTTTGTC
1 GAATGTGTTTATGGTGCCCAATC--TTGAAAA-GAAGAGACTATTACAAGAATCCATA-TTTGTC
* * ** * * * * * * ****
967982 TCCTTTGAGGGATAAACTTTGA-GTC-AA-AAATAGTA-GAAAGAAAAGGTTTTCTTGCAGCCTC
62 TCATTTAAGTAATGAACTTTGATTTCTAAGAAAAAG-AGGGAAGAAAAGCTTTTCCTGCAAAAAC
* *
968043 AAAGCATCAATGTCATGTATCCTAATGAAGG
126 AAAGCATCAATATCATGTATCCTAATG-AGA
* *
968074 GAATGTGCTTT-TGGTTCCCAATCTTGAAAAGAAGAGTCACTATTACAAGAATCCATCTTTGTCT
1 GAATGTG-TTTATGGTGCCCAATCTTGAAAAGAAGAG--ACTATTACAAGAATCCATATTTGTCT
* * * *
968138 CATTTAAGTAACGAACTTTGATTTC-AAGGAAAATG-GGGCAAAGAAATGC-TTTCCTTGCAAAG
63 CATTTAAGTAATGAACTTTGATTTCTAA-GAAAAAGAGGG--AAGAAAAGCTTTTCC-TGCAAAA
* * *
968200 CCAAAGCACCAATATTATGTATCCTAATGATGA
124 ACAAAGCATCAATATCATGTATCCTAATGA-GA
* * * * * * *
968233 GAACGAGTTTATGGTGCCCAATCATGAAAAGAATGAAGACCAATACTAGAATCCATGTTTGTCTC
1 GAATGTGTTTATGGTGCCCAATCTTGAAAAGAA-G-AGACTATTACAAGAATCCATATTTGTCTC
* ** * * *
968298 ATTTGAGGCATGAACTTAGACTTCTTAGAAAAAGATGGGAAGAAAAGCTTTTCCTGCAAAAACAA
64 ATTTAAGTAATGAACTTTGATTTCTAAGAAAAAGA-GGGAAGAAAAGCTTTTCCTGCAAAAACAA
*
968363 AGCATCAATATCGTGTATCCTAATGAGAA
128 AGCATCAATATCATGTATCCTAATGAG-A
* * * * **
968392 GAATGTGTTTATGATGCCTAATCTTGAAAAGAATTGGGATTATTATGAGAATCCATATTTGTCTC
1 GAATGTGTTTATGGTGCCCAATCTTGAAAAGAA--GAGACTATTACAAGAATCCATATTTGTCTC
* * * * * * **
968457 TTTTAAATGATGAACTTTGA-TTCTATGAAAAATG-GTTGTAAAAAAAAGCTTTTCCTGCAAAGC
64 ATTTAAGTAATGAACTTTGATTTCTAAGAAAAA-GAG--G-GAAGAAAAGCTTTTCCTGCAAAAA
* * *
968520 CAAACCATCATTGTCATGTAT-CTAAATGAG-
125 CAAAGCATCAATATCATGTATCCT-AATGAGA
* * * * * * *
968550 G-A--T-TTT-TGGTGCCCAACCATGAATAGGATGGAGACTATTATAAGAATCCATGTTTGTCTT
1 GAATGTGTTTATGGTGCCCAATCTTGAA-AAGA-AGAGACTATTACAAGAATCCATATTTGTCTC
968610 ATTT
64 ATTT
968614 GAGGGAACTT
Statistics
Matches: 871, Mismatches: 203, Indels: 165
0.70 0.16 0.13
Matches are distributed among these distances:
145 34 0.04
146 7 0.01
147 5 0.01
148 2 0.00
149 43 0.05
150 11 0.01
151 8 0.01
152 85 0.10
153 61 0.07
154 27 0.03
155 40 0.05
156 42 0.05
157 20 0.02
158 119 0.14
159 270 0.31
160 92 0.11
161 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (155 bp):
GAATGTGTTTATGGTGCCCAATCTTGAAAAGAAGAGACTATTACAAGAATCCATATTTGTCTCAT
TTAAGTAATGAACTTTGATTTCTAAGAAAAAGAGGGAAGAAAAGCTTTTCCTGCAAAAACAAAGC
ATCAATATCATGTATCCTAATGAGA
Found at i:968481 original size:774 final size:768
Alignment explanation
Indices: 965367--972524 Score: 5559
Period size: 774 Copynumber: 9.3 Consensus size: 768
965357 GACTATTACA
* * **
965367 AGAATCCTTATTTGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGTTAAAAAAG
1 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGG-TAAAAAAG
** * * * * *
965432 CTTTTCTTGTGAAGCCAAACCATCAGTGTCATGTCTCCCAATGAGTAATTTTGGTGCCCCATCAT
65 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCAT
* * * ** **
965497 GACAAGAATGGAGACCATTACAAGAATCCATATTTACCTCATTTGAGGGATGGGCTTTGAATTT-
130 GAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATTTG
* * ** *
965561 AAGAAAA-ATGGGCTAAAGAAATGCTTTTCTTGTGAAGTCAAAGCATCAATGCCAT-GTATCATT
195 AAGAAAATA-GGTC-AAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAAT---ATCG----A-T
* * ** * * *
965624 ATAAGTAGAACATGTTTATGGTG-CCAAACTTGAAAAGCTGTAGATTGTTATGACAATCCAAGTT
250 -GAAG-AGAACATGTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTATGACAATCCAAGTT
* * * * * * *
965688 TGTCTCATTTGAGGGCCAAACTCTAAGTCTATCAAAAATGGTGGAAAGAAGAGTTTTTCCTGCGA
313 TGTCTCATTTGAGGGACAAACT-T-TG-ATATCAAAAATGGTGGAAAGAAAAGGTTTTCTTGAG-
** * *
965753 CACCAAATTATCAATGTCATGTATCCCAATGAGGGGAATTTGTTTTTGGTTCCCAATCTTGAAAA
374 C-CCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAA
* * * *
965818 GAATGGAGACTATTATGA-AATCCTTGTTTGCCTCATTGAAGGGATAAACTTTGATTTTAAGGAA
438 GAAT-GAGACTATTATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * *
965882 AATGGGGCAAAG-GAAGCTTTCCTTGCAAAAGCAAACCATAAATTTCATGTATCCTAATGAGGAG
502 AATAGGGCAAAGAAAAGCTTTCCTTGC-AAAGCAAATCATCAATATCATGTATCCTAATGAGGAG
* * * * ** *
965946 AATGTGTTTATGATGCTCAATCATGAAAAGATTGAAGATTGTTAATAG-A---A------TCTCA
566 AACGTGTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * **
966001 TTTTGAGGC-TCAGACTTAGACTCTATGAAAAATGGTGAGAAGAAAAG-CTTTCTTGTGAAACCA
631 -TTTGAGGCATGA-ACTTAGACTCTA-GAAAAA-GGTGGGAAGAAAAGCCTTTCTTGCAAAACCA
* * * * *
966064 AAGCATCAATATCATGTATCCTAATGAGAAAAATATGTTTATTGTGCCTAATCTTGAAAAGAGTA
692 AAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATT
*
966129 AGGATTATTATG
757 GGGATTATTATG
*
966141 AG-ATGCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAATAG
1 AGAAT-CCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAG
* * ** * * * *
966205 CTTTCCTTGCAAAACCAAAATATCAATGTCGTGTATCCCAATGAGAATTTTTGGTGCCCGATCAC
65 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCAT
* * * *** *
966270 GAAAAGAATTGAGACTATTA-TAGAATCCATGTTTGTCTCTTTTGAGGGCCAAACTTTG-ATTTT
130 GAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATTTG
* ** * **
966333 AAGGAAAATAGCTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGC--CAA-GCCAATGTGGAGAA-
195 AA-GAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAAGAGAAC
* * * *
966394 AGTGTTTATGGTGCACAATCTAGAAAAGATGGAGATTGTTATGGCAA-CCAAGTTTGTCTCATTT
259 A-TGTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTATGACAATCCAAGTTTGTCTCATTT
* *
966458 GAGAGACAAACTTTGATTCTACCAAAAATGGTGGAAAGAAAA-G-TTTC-T-----------AT-
323 GAGGGACAAACTTTGA---TATCAAAAATGGTGGAAAGAAAAGGTTTTCTTGAGCCCAAAGCATC
* * * * * *
966508 --T-T--TG-ATACC-ATAGCAAGGGAACGTGTTTTTGGCTT-TCAATATCGAAAAG-ATAGTTG
385 AATGTCATGTATCCCAAT-G-AAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAAT-G-AG
** * * *
966564 ACTATTACAAGAATCCATGTTTATCTCATTTTTAGGGGATAAAAC-TTGATTTTAAGGAAAA-AG
445 ACTATTATGAGAATCCATGTTTGTCTCA--TTTAAGGGAT-GAACTTTGATTTTAAGGAAAATAG
* * * * *
966627 GGCAAAGAAAAGCTTTCCTTGCGAAATCAAATCATTAATATCATGTATCCTAATGAAGAAAACAT
507 GGCAAAGAAAAGCTTTCCTTGC-AAAGCAAATCATCAATATCATGTATCCTAATGAGGAGAACGT
* * * **
966692 GTTTATGGTACCCAATTATGAAAAAAATGAAG---A-T-C----ATCCATGTTCATCTCATTTGA
571 GTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGA
* ** *
966748 GGCATGAACTTAGAGTCTATGGAAAATTGTGGGAACAAAAATG-CTTTCTTGCAAAACCAAAGCA
636 GGCATGAACTTAGACTCTA--GAAAAAGGTGGGAA-GAAAA-GCCTTTCTTGCAAAACCAAAGCA
* * * * *
966812 CCAATGTCGTGTATCCTAATGAGAAG-ATGATGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGA
697 TCAATATCATGTATCCTAATGAGAAGAATG-TGTTTATGGTGCCTAATCTTGAAAAGAATTGGGA
*
966876 TTATTATC
761 TTATTATG
** ** * *
966884 AGAATCCATGTTTGTCTTGTTTTAAGAGACAAACTTTGATTCTATGAATAATGGTTGTAAAAATA
1 AGAATCCATGTTTGTC-TCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAA-A
* * ** * * *
966949 ACTTTTCTTGCAAAGCCAAACTATCAATGTCATGTATCTGAATGAGGA-TGTTGGGGCCCAACCA
64 GCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCA
* * * * * *
967013 TGAAAAGAATGGAGACTGTTATAGGAATCCATGTTTGCCTTACTTGATGGG-TGAACTTT-AATT
129 TGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGA-GGGATGAACTTTGAATT
* * ** *
967076 ATGAGGAAAATAAGTCAAAGAAAAGCTTTTCTTGTGAAGCCAAAGCATCAATAT-TATGTAGCCC
193 -TGAAGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGA--T-G---
* * *** * * ** * *
967140 AATAAGGGAACATGTTTATGGTGCCCAGTCATTTAAAAAAGGAGATTGTTACAACTATCTAAGTT
251 ---AAGAGAACATGTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTATGACAATCCAAGTT
967205 TGTCTCATTTGAGGGACAAACTTTGATTCCATCAAAAATGGT-GAAA-AAAA-GTATTTCTTAAG
313 TGTCTCATTTGAGGGACAAACTTTGA-T--ATCAAAAATGGTGGAAAGAAAAGGT-TTTCTT--G
**** * * **
967267 ATAATAAAGCATCAATGTCATGCTA--CCATTAAAGGGAATGTGTTTTTGGTTCCTTATCTTGAA
372 AGCCCAAAGCATCAATGTCATG-TATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAA
* * *
967330 AAGAATGGAGACTATTATGGGAATCC-TCATTTGTCTCATTTAAGGGATAAACTTTGATTTTAAG
436 AAGAAT-GAGACTATTATGAGAATCCAT-GTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAG
* *
967394 GAAAATAGGGCAAAG-AAAGCTTTTCTTGTGAAAGCAAATCATCAATATCATGTATCCTAATGAG
499 GAAAATAGGGCAAAGAAAAGCTTTCCTTG-CAAAGCAAATCATCAATATCATGTATCCTAATGAG
* * * * * * *
967458 GATAATGTGTTTATAGTGCCCAATAATGAAAA-AATTAAGATCGTTATTA-AATCCATGTTTGTC
563 GAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTC
*
967521 TCATTTGAAGG-ATGAACTTAGACTCTACGAAAAATGGTGGGAAGAAAAAGCCTTTCTTGTAAAA
628 TCATTTG-AGGCATGAACTTAGACTCTA-GAAAAA-GGTGGGAAG-AAAAGCCTTTCTTGCAAAA
* * *
967585 CCAAAGCATCAATATCGTGTATCCTAGTGATG-AGAATGTGTTTATGGTGCCTAATCTTTCAAAA
689 CCAAAGCATCAATATCATGTATCCTAATGA-GAAGAATGTGTTTATGGTGCCTAATC-TTGAAAA
967649 -AATAT-GGATTATTATG
752 GAAT-TGGGATTATTATG
* * * * * *
967665 AGAATCCATGTTAGTTTTATTTAAAAGATGAACTTTGATTCTATGAAAAATAGTGGCAAAGAAAG
1 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAA-AAAG
* * * *
967730 CTTTCCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATAAGGATTTTTGGTGCCCGATTAT
65 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCAT
* * * * * * *
967795 GAAAAGAATGGGGACTATTATAAGAATCTATGTTTATCTCATTTAAGGGATGAACTTTGACTTTC
130 GAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATTTG
* * *
967860 AAGAAAATAGGTCAAAGACAAGCTTTTCTTACAAAGCCAAAGCATCAATATCGATGAAGAGAACG
195 AAGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAAGAGAACA
*** * *
967925 TGTTTATGGTGCTTGATCAAGGGAAA-ATGGAGATTATTATGACAATCCAAGTTTGTCTCCTTTG
260 TGTTTATGGTGCCCAATCAA-GGAAAGATGGAGATTGTTATGACAATCCAAGTTTGTCTCATTTG
* * * *
967989 AGGGATAAACTTTGA-GTCAAAAATAGTAGAAAGAAAAGGTTTTCTTGCAGCCTCAAAGCATCAA
324 AGGGACAAACTTTGATATCAAAAATGGTGGAAAGAAAAGGTTTTCTTG-AGCC-CAAAGCATCAA
* *
968053 TGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAA-GAGTCACTAT
387 TGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAG--ACTAT
** * ** * * *
968117 TACAAGAATCCATCTTTGTCTCATTTAAGTAACGAACTTTGATTTCAAGGAAAATGGGGCAAAGA
450 TATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * * * * *
968182 AATGCTTTCCTTGCAAAGCCAAAGCACCAATATTATGTATCCTAATGATGAGAACGAGTTTATGG
515 AAAGCTTTCCTTGCAAAG-CAAATCATCAATATCATGTATCCTAATGAGGAGAACGTGTTTATGG
* *
968247 TGCCCAATCATGAAAAGAATGAAGACCAATACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
579 TGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAA
* * * * *
968312 CTTAGACTTCTTAGAAAAAGATGGGAAGAAAAGCTTTTCCTGCAAAAACAAAGCATCAATATCGT
644 CTTAGAC-TC-TAGAAAAAGGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCAT
*
968377 GTATCCTAATGAGAAGAATGTGTTTATGATGCCTAATCTTGAAAAGAATTGGGATTATTATG
707 GTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATTGGGATTATTATG
* * *
968439 AGAATCCATATTTGTCTCTTTTAA-ATGATGAACTTTGATTCTATGAAAAATGGTTGTAAAAAAA
1 AGAATCCATGTTTGTCTCATTTAAGA-GATGAACTTTGATTCTATGAAAAATGGTGGT--AAAAA
* * ** *
968503 AGCTTTTCCTGCAAAGCCAAACCATCATTGTCATGTATCTAAATGAGGATTTTTGGTGCCCAACC
63 AGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATC
* * * * *
968568 ATGAATAGGATGGAGACTATTATAAGAATCCATGTTTGTCTTATTTGA-GG--GAACTTTGATTT
128 ATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATT
* * * * *
968630 TGACGAAAAT-GGCTCAAAGTACAGCTTTTCTTG-AGAAGCCAAAGCATCAAGATCATGTATCCC
193 TGAAGAAAATAGG-TCAAAGAAAAGCTTTTCTTGCA-AAGCCAAAGCATCAATATC--G-AT--G
* ** * * * *
968693 AATGAGAAGATCACGTTCCT-GT--TC-AT-AA--AAAGATGGAGATTCTT-TCGATAA-CTTAA
251 AA-GAG-A-A-CATGTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTAT-GACAATC-CAA
* * * * ** * * *
968749 ATTTGTCTTATTTGAGGGATAAACTTTGAAACTGTGGAAAGTAGTGGAAAGAAAAGTTTTTCTTG
310 GTTTGTCTCATTTGAGGGACAAACTTTG--A-TATCAAAAATGGTGGAAAGAAAAGGTTTTCTTG
* * ** * **
968814 AGACCACAAAGCATCAATGTCATGTATCCCAATGATGAGAATGCATTTTTGGTTCCTAATCTCAA
372 AG-CC-CAAAGCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * * * *
968879 AAAGAATGGAAACTACTATGAGAATTCATGTCTGTCTCACTGAAGTGATGAACTTTGATTTTAAG
435 AAAGAAT-GAGACTATTATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAG
* * * * * *
968944 GAAAAATAGGGCAAAGAAAGGATTTCCTTACAAAGCCAATGCATCAATATCTTGTATCCTAACGA
499 G-AAAATAGGGCAAAGAAAAGCTTTCCTTGCAAAGCAAAT-CATCAATATCATGTATCCTAATGA
** *
969009 GGAGAACAG-GTTTATGGTGCCCAATCACACAAAAAGAATGAAAATCATTACTAGAATCCATGTT
562 GGAGAAC-GTGTTTATGGTGCCCAAT--CATGAAAAGAATGAAGATCATTACTAGAATCCATGTT
* * *
969073 TATTTCATTTAAGGCATGAACTTAGACTCT-GAAAAATGGTGGGAAGAAAAGCCTTTCTTGCAAA
624 TGTCTCATTTGAGGCATGAACTTAGACTCTAGAAAAA-GGTGGGAAGAAAAGCCTTTCTTGCAAA
* * ** * *
969137 ACCAATGCATCATTATTGTGTATCCAAATGAGAAG-ATGATGTTTAAGGTGCCTAATCTTG--AA
688 ACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG-TGTTTATGGTGCCTAATCTTGAAAA
969199 -AA----G---A-TAT-
752 GAATTGGGATTATTATG
*
969206 -GAATCCATGTTTGTCTCA-TTAAGAGATGAACTTAGATTCTATGAAAAATGGTGGTAAAAAAAA
1 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGT---AAAAA
* *** * * * *
969269 AGCTTTTATTGCAAAGTTGAACCATCAAGGTCATGTGTCCCAATAAGGATTTTTGGTACCCAATC
63 AGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATC
* * *
969334 ATGAAGAGAAT-G-G----TTACAAGAATCCATGTTTGTCTTATTTGAGGGATG-AGTGTT-AAT
128 ATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACT-TTGAAT
* * * * *** * *
969391 TTAAAAAAAAATAGATCAAAGAAAAGCTTTTCTTACAAAGCCAAATTGTTAATAT-GAATGAGGA
192 TT-GAAGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCG-ATGAAGA
** * * * * *
969455 GAATGTGTTTATAGTGCCTAATCAA-GAAATGATAGAGGTTGTTGTGACAATCCAAGTTTGTCTC
255 GAACATGTTTATGGTGCCCAATCAAGGAAA-GATGGAGATTGTTATGACAATCCAAGTTTGTCTC
** ** *
969519 ATTCAAGGGACAAACTTTGATTCTATCAAAAATGGTAAAAAGAAAA-GTTTTCCTTGAGACAACA
319 ATTTGAGGGACAAACTTTGA---TATCAAAAATGGTGGAAAGAAAAGGTTTT-CTTGAG-C-CCA
* * * * * *
969583 AAGCAACATTGTCATTGTATCCCAATGAATGAAACGAGTTTTTGGTTCCCAATCTTGAAAAGAAT
378 AAGCATCAATGTCA-TGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT
* *
969648 GGAGACAATTATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAA--TAAATA
442 -GAGACTATTATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
* *
969711 -GGCAAAGAAAAGCTTTCCTTGCAAAAGCAAATAATCAATATCATGTATCCTAATGAGGA-AAAG
506 GGGCAAAGAAAAGCTTTCCTTGC-AAAGCAAATCATCAATATCATGTATCCTAATGAGGAGAACG
** * *
969774 TGTTTATGGTG-CCAATCATGAAACTAATGAAGATCACTACTAGAATCTATGTTTGTCTCATTTG
570 TGTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTG
** ** *
969838 AGGCACAAACTTAGACT-TCATGAAAAATGGTGGGAA-AAAAGCCTTTCTTGTGAAACTAAAGCA
635 AGGCATGAACTTAGACTCT-A-GAAAAA-GGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCA
* *
969901 TCAATATCATGTATCCTAATGAGAAGATTGTGTTTATAGTGCCTAATCTTGAAAAGAA-TGGAGA
697 TCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATTGG-GA
969965 TTATTATG
761 TTATTATG
*** * * *
969973 AGAAGGATATATTTGTCTTATTTAAGAG-TCGAACTTTGATTTTATGAAAAATGGTGGTAAAAAA
1 AGAA-TCCATGTTTGTCTCATTTAAGAGAT-GAACTTTGATTCTATGAAAAATGGTGGT---AAA
* *** *
970037 AAAACTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATTTGAATGAGGATTTTTGATTGCCCA
61 AAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTG-GTGCCCA
* * *
970102 ACCATGAATAGAATGGAGACTATTAAAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTT--
125 ATCATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA
* * ** * *
970165 A---G-ACAAAATAGGCCAAAGAAAAGCTTTTCTTGTGAAGTCAAAGCATCAATATCATGTTTCG
190 ATTTGAAGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATC--G-AT-G
* * *
970226 CAATAAGGAGAACATGCTTATGGTGCCCAAACTCAA--AAAGGTGGAGATTGTTATGACATTCCA
251 ----AA-GAGAACATGTTTATGGTGCCC-AA-TCAAGGAAAGATGGAGATTGTTATGACAATCCA
* * * * * * *
970289 GGTTTGTCTCATTTGAAGGTCAAACTCTAATTATATCGAAAATGGTGGACAA-AAGAGTTTTTCT
309 AGTTTGTCTCATTTGAGGGACAAACT-T--TGATATCAAAAATGGTGGA-AAGAAAAGGTTTTCT
* * * ** *
970353 TGCGACACCAAAG---C-ATGTCTTGTATCTCAATGAAGGGAACATGTTTTTGG-TCCCAATCTC
370 TGAG-C-CCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT
* * * * * * *
970413 AAAAAGAATGGAGACTATTATGA-AATCCTTGTTTATCTCATTGAGGGGATTAACTTTGATTTCA
433 GAAAAGAAT-GAGACTATTATGAGAATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTA
* * * * * *
970477 AGGAAAATTGGGCAAAG-AAAGCTTT-TTGTGC-GAGCAAACCATCAACAT--TGTATCCTAATC
497 AGGAAAATAGGGCAAAGAAAAGCTTTCCT-TGCAAAGCAAATCATCAATATCATGTATCCTAATG
* ** ** * * *
970537 AGAAGAATATGTTTATGGTGCCCAATTGTGAAAAGAATGAAGATCATTACTGGAATCTATATTTG
561 AGGAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTG
* * * * * * *
970602 TCTTATTTGAGGCGTGAACTTCGAATCTATGGAAAATGATGGAAAGAAAAGCCTTTCTTGCAAAA
626 TCTCATTTGAGGCATGAACTTAGACTCTA--GAAAAAGGTGGGAAGAAAAGCCTTTCTTGCAAAA
* * *
970667 CCAAAGCATCAATATAATGTATCCTAATGAGAAGAA-GAAGTTTGTGGT-CC----CTTGAAAAG
689 CCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG-TGTTTATGGTGCCTAATCTTGAAAAG
* * *
970726 AATAGGCATTATTGTG
753 AATTGGGATTATTATG
*
970742 AGAATCCATGCTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTTAAAAAAG
1 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGG-TAAAAAAG
* * * * *
970807 CTTTCCTTGCAAAGCCAAACTATCAATGTCATGTATCCCAATGAGAATTTTTGTTGCCCGATCAT
65 CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCAT
* * * * * *
970872 GAAAGGAATGGAGAC--TTACAGGAATCCATGTTTGTCTC-TTTTAGAGGACGAGCTTTG-TTTT
130 GAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAG-GGATGAACTTTGAATTT
** * * *
970933 GAAGGAAAATATCTC-AAGAAAAAGCTTTTTTTGCAAAGCCAAAGCATCAATATCATATATCTCA
194 GAA-GAAAATAGGTCAAAG-AAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATC---GA--TGA
* * * * * *
970997 ATGAGGTGAA-AGTGTTTATAGTACCCAATC-TGGAGAAGATGGAGATAGTTATGGCGATCCAAG
252 A-GA---GAACA-TGTTTATGGTGCCCAATCAAGGA-AAGATGGAGATTGTTATGACAATCCAAG
* ** * * *
971060 TTTGTCTTATTTGAGATAAAAACTTTGAT-TCTACCGAAAATGGTGGAAAGAAAAGTTTTTGTTA
311 TTTGTCTCATTTGAGGGACAAACTTTGATATC-A---AAAATGGTGGAAAGAAAAGGTTTT-CT-
** ** * *
971124 TGATACCAAAATATCAATGTCATGTATCCCAATGAAAGGAATGTGTTTTTGGTTCCCAATCTCGA
370 TGAGCCCAAAGCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * *
971189 AAAGATTGTAGACTACTA-AAGAATCCATGCTTGTCTCATTTTAAGGGATGAAATTTGATTTTAA
435 AAAGAATG-AGACTATTATGAGAATCCATGTTTGTCTCA-TTTAAGGGATGAACTTTGATTTTAA
** * ** *
971253 CAAAAATAGGGCAATGAAAAGCTTTCCTTGCGAAATTAAATCATCAATATCATGTATCCCAATGA
498 GGAAAATAGGGCAAAGAAAAGCTTTCCTTGC-AAAGCAAATCATCAATATCATGTATCCTAATGA
* * * * **
971318 AGAGAACGTGTTTATAGTGTCCAATCATGAAAA-CAT-AAGGATCATTACTAGAATCCATGTTCA
562 GGAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATGAA-GATCATTACTAGAATCCATGTTTG
* * * * * * *
971381 TCGCATTTAAGGCATGAACTTAGACTTTATGGAACATGGTAGGAAGAAAAGCTTTTCTTGCAAAA
626 TCTCATTTGAGGCATGAACTTAGACTCTA--GAAAAAGGTGGGAAGAAAAGCCTTTCTTGCAAAA
** * * *
971446 TTAAAGCACCAATATCATGTATCCAAATAAGAAG-ATGATGTTT-TAGGTGCCTAATCTTGAAAA
689 CCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG-TGTTTAT-GGTGCCTAATCTTGAAAA
* * *
971509 GAA-TGAGAATTAATATA
752 GAATTG-GGATTATTATG
* ** * *
971526 AGAATCCATGTTTGTCGT-GTTTAAGAGACAAACTTTGATTCTATGAAAAATGGTTGCAAAAAAG
1 AGAATCCATGTTTGTC-TCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAG
* * * * ** ** * *
971590 AACTTTTCTTGCAAAGACAAACTATCAGTGTCATGCATCTGAACAAGGA-TTTTGGGGCCCAACC
65 --CTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATC
* * * * * **
971654 ATGAAAAGAATGAAGATTATTACAAGAATCCATGCTTG--TCA----A-AGA-CAAGCTTT-TCT
128 ATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAA-CTTTGAAT
** ** * * * *
971710 TGTGAAG-CCA-AGG-C----ATCA--TTATCATG--TAG-C----C--CAATA---A-G--GAA
192 T-TGAAGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAAGAG
* * * *
971751 AACATGTTTATGGTACCCAATCATGGAAAGAAGGAGATTGTTA-GAACTATCCAAGTTTGTCTCA
256 AACATGTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTATG-ACAATCCAAGTTTGTCTCA
* **
971815 TTTGAGGGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAA-GTTTTCCTTGGGACAAAAA
320 TTTGAGGGACAAACTTTGA---TATCAAAAATGGTGGAAAGAAAAGGTTTT-CTTGAG-CCCAAA
* * * ** **
971879 GGCATCAATGTCAAGTATCCCACTTAAGGGAACATGTTTTTGGTTCCTTATCTTGAAAAGAATGG
380 -GCATCAATGTCATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAAT-G
* * ** * *
971944 AGACTATTAAGAGAATCCTTGTTTGTCTCATTTAAGTAAATGAACTTTAATTTTAAGGAAAATGG
443 AGACTATTATGAGAATCCATGTTTGTCTCATTTAAG-GGATGAACTTTGATTTTAAGGAAAATAG
* * *
972009 GGCAAAGAAAAGCTTCCCTTGTAAAAGCAAATCATCAATATCCTGTATCCTAATGAAGAGGAGAA
507 GGCAAAGAAAAGCTTTCCTTG-CAAAGCAAATCATCAATATCATGTATCCTAAT---GAGGAGAA
* ** * * *
972074 CGTGTTTATGGTGCCCAATAACAAAAAGAATGAAGATCATTACTAGTATCCATGCTTGTCTTATT
568 CGTGTTTATGGTGCCCAATCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* ** * * * **
972139 TGAGGCACGATGTTAGACTCCACAAAAAATGGT-GGAAGAAGAGCCTTTCTTG-AGAAATGAAAG
633 TGAGGCATGAACTTAGACTCTA-GAAAAA-GGTGGGAAGAAAAGCCTTTCTTGCA-AAACCAAAG
* * * *
972202 CATCATTATTATGTATCCTAATAAGAAGAATGTTTTTATGGTGCCTAATCTTGAAAAGAA-TGGA
695 CATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATTGG-
*
972266 GATTATTTTG
759 GATTATTATG
* * * * *
972276 AGAATCCATGTTAGTCTCATTTAAGAGATAAACTTTGACTCAATGAAAAATGGTGGCAAAAAAAA
1 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGG--TAAAAAA
*
972341 GCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGTATTTTTGGTGCCCAATCA
64 GCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCA
** * * * * * *
972406 CAAAAAGAATGGATACTATTACAAGAATCTAAGTTTGTCACCTTTGAGGGATGAACTTTGATTTT
129 TGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATTT
* * * * * * * *
972471 TAAGGAAAATGGGGCAAAGAAAGGCTTTCCTTACGAAAG-TAAATCATCAATATC
194 GAA-GAAAATAGGTCAAAGAAAAGCTTTTCTTGC-AAAGCCAAAGCATCAATATC
972525 AAGTATCCTA
Statistics
Matches: 5082, Mismatches: 946, Indels: 707
0.75 0.14 0.10
Matches are distributed among these distances:
733 1 0.00
736 3 0.00
737 9 0.00
738 37 0.01
739 16 0.00
740 9 0.00
741 123 0.02
742 22 0.00
743 92 0.02
744 75 0.01
745 115 0.02
746 152 0.03
747 94 0.02
749 8 0.00
750 203 0.04
751 93 0.02
752 9 0.00
753 2 0.00
754 57 0.01
755 74 0.01
756 65 0.01
757 66 0.01
758 63 0.01
759 23 0.00
760 102 0.02
761 115 0.02
762 105 0.02
763 71 0.01
764 3 0.00
765 60 0.01
766 149 0.03
767 4 0.00
768 66 0.01
769 165 0.03
770 106 0.02
771 111 0.02
772 227 0.04
773 391 0.08
774 471 0.09
775 229 0.05
776 88 0.02
777 61 0.01
778 166 0.03
779 269 0.05
780 223 0.04
781 308 0.06
782 21 0.00
783 10 0.00
784 94 0.02
785 39 0.01
786 17 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (768 bp):
AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAGC
TTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAGGATTTTTGGTGCCCAATCATG
AAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAATTTGA
AGAAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAAGAGAACAT
GTTTATGGTGCCCAATCAAGGAAAGATGGAGATTGTTATGACAATCCAAGTTTGTCTCATTTGAG
GGACAAACTTTGATATCAAAAATGGTGGAAAGAAAAGGTTTTCTTGAGCCCAAAGCATCAATGTC
ATGTATCCCAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGAGACTATTATGAG
AATCCATGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGCT
TTCCTTGCAAAGCAAATCATCAATATCATGTATCCTAATGAGGAGAACGTGTTTATGGTGCCCAA
TCATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAC
TCTAGAAAAAGGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAA
TGAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATTGGGATTATTATG
Found at i:972689 original size:471 final size:465
Alignment explanation
Indices: 971934--973038 Score: 1322
Period size: 471 Copynumber: 2.4 Consensus size: 465
971924 CCTTATCTTG
** * * ** *
971934 AAAAGAATGGAGACTATTA-AGAGAATCCTTGTTTGTCTCATTTAAGTAAATGAACTTTAATTTT
1 AAAAGAATGGAGACTATTACA-AGAATCCAAGTTTGTCACATTTGAG-GGATGAACTTTGATTTT
* * *
971998 AAGGAAAATGGGGCAAAGAAAAGCTTCCCTTGTAAAAGCAAATCATCAATATCCTGTATCCTAAT
64 AAGGAAAATGGGGCAAAGAAAAGCTTTCCTTG-CAAAGTAAATCATCAATATCCTGTATCCTAAT
* ** * * *
972063 GAAGAGGAGAACGTGTTTATGGTGCCCAATAACAAAAAGAATGAAGATCATTACTAGTATCCATG
128 ---GAGGAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATAAAGATCATTACTAGAATCCATA
* * *
972128 CTTGTCTTATTTGAGGCACGATGTTAGACTCCACAAAAAATGGTGGAAGAAGAGCCTTTCTTGAG
190 CTTGTCTCATTTGAGGCACGATGTTAAACTCCACAAAAAATGGTGGAAGAAAAGCCTTTCTTGAG
* * *
972193 AAATGAAAGCATCATTATTATGTATCCTAATAAGAAGAATGTTTTTATGGTGCCTAATCTTGAAA
255 AAATGAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGCCT--T-TTGAAA
* * * *
972258 AGAATGGAGATTATTTTGAGAATCCATG-TTAGTCTCATTTAAGAGATAAACTTTGACTCAATGA
317 AGAATGGAGAATACTATGAGAATCCATGTTTA-TCTCATTTAAAAGATAAACTTTGACTCAATGA
* *
972322 AAAATGGTGGCAAAAAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCCCAATGAG
381 AAAATGGTGG-AAAAAAAAGCTTTTCTTACAAAGCCAAACCATCAATGTCATGAATCCCAATGAG
* *
972387 TATTTTTGGTGCCCAATCACA
445 GAGTTTTGGTGCCCAATCACA
* * *
972408 AAAAGAATGGATACTATTACAAGAATCTAAGTTTGTCACCTTTGAGGGATGAACTTTGATTTTTA
1 AAAAGAATGGAGACTATTACAAGAATCCAAGTTTGTCACATTTGAGGGATGAACTTTGA-TTTTA
* * **
972473 AGGAAAATGGGGCAAAGAAAGGCTTTCCTTACGAAAGTAAATCATCAATATCAAGTATCCTAATG
65 AGGAAAATGGGGCAAAGAAAAGCTTTCCTTGC-AAAGTAAATCATCAATATCCTGTATCCTAATG
* * ** * *
972538 AGGAGAATGTTTTTATGGTGCCCAATCATGAGCAGAATAAAGATCATTACTAGAATCCTTATTTG
129 AGGAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATAAAGATCATTACTAGAATCCATACTTG
*** * *
972603 TCTCATTTGAGGCACGAAT-TTAAACTTTGCAAAAAATGGTGGATGAAAATCCTTTCTTGCA-AA
194 TCTCATTTGAGGCACG-ATGTTAAACTCCACAAAAAATGGTGGAAGAAAAGCCTTTCTTG-AGAA
* * * *
972666 ACT-AAAGCATCAATATCATGTATCTTAGTGAGAAGAATGTGTTTATGGTGCCTTTTGATAAGAA
257 A-TGAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGCCTTTTGAAAAGAA
* * * **
972730 TGGGGAATACTATGAGAATCCATGTTTATCTCATTTAAAAGATAAGCTTTGATTTTATGAAAAAT
321 TGGAGAATACTATGAGAATCCATGTTTATCTCATTTAAAAGATAAACTTTGACTCAATGAAAAAT
** * *
972795 GGTGGTGAAAAAAGCTTTTCTTACAATGGCAAACCATCAATGTCATGAATCCCAATGAGGAGTTT
386 GGTGGAAAAAAAAGCTTTTCTTACAAAGCCAAACCATCAATGTCATGAATCCCAATGAGGAGTTT
* *
972860 TGGTGTCCAATCACG
451 TGGTGCCCAATCACA
* * * **
972875 AAAAGAATGGAGACTATTGCAAGAATCCATGTTTGTCTCATTTGAGGGACAAACTTTGATTTTAA
1 AAAAGAATGGAGACTATTACAAGAATCCAAGTTTGTCACATTTGAGGGATGAACTTTGATTTTAA
* * * * * * * *
972940 GGAAAATGGGCCAAATAAAAGCTTTTCTTGCAATGTCAAAGCATTAATATCCTGTATCCCAATAA
66 GGAAAATGGGGCAAAGAAAAGCTTTCCTTGCAAAGT-AAATCATCAATATCCTGTATCCTAATGA
*
973005 GGAGAACGTGTTTAT-GTGCCCAAACATGAAAAGA
130 GGAGAACGTGTTTATGGTGCCCAATCATGAAAAGA
973039 TGGAGATTGT
Statistics
Matches: 535, Mismatches: 88, Indels: 25
0.83 0.14 0.04
Matches are distributed among these distances:
465 20 0.04
466 67 0.13
467 116 0.22
468 66 0.12
469 4 0.01
471 149 0.28
472 4 0.01
473 10 0.02
474 98 0.18
475 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.30
Consensus pattern (465 bp):
AAAAGAATGGAGACTATTACAAGAATCCAAGTTTGTCACATTTGAGGGATGAACTTTGATTTTAA
GGAAAATGGGGCAAAGAAAAGCTTTCCTTGCAAAGTAAATCATCAATATCCTGTATCCTAATGAG
GAGAACGTGTTTATGGTGCCCAATCATGAAAAGAATAAAGATCATTACTAGAATCCATACTTGTC
TCATTTGAGGCACGATGTTAAACTCCACAAAAAATGGTGGAAGAAAAGCCTTTCTTGAGAAATGA
AAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGCCTTTTGAAAAGAATGGAG
AATACTATGAGAATCCATGTTTATCTCATTTAAAAGATAAACTTTGACTCAATGAAAAATGGTGG
AAAAAAAAGCTTTTCTTACAAAGCCAAACCATCAATGTCATGAATCCCAATGAGGAGTTTTGGTG
CCCAATCACA
Found at i:975077 original size:12 final size:11
Alignment explanation
Indices: 975055--975130 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
975045 AGAGAAAGAA
*
975055 GAGAGAGGAGG
1 GAGATAGGAGG
975066 GATGATAGGAGG
1 GA-GATAGGAGG
*
975078 AGAGACAGGA--
1 -GAGATAGGAGG
*
975088 GAGATAGTA--
1 GAGATAGGAGG
975097 GAGATAGGAGG
1 GAGATAGGAGG
975108 GATGATAGGAGG
1 GA-GATAGGAGG
*
975120 AGAGACAGGAG
1 -GAGATAGGAG
975131 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:975106 original size:42 final size:42
Alignment explanation
Indices: 975045--975163 Score: 202
Period size: 42 Copynumber: 2.8 Consensus size: 42
975035 TAGCCCTCAA
* *
975045 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
975087 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
975129 AGAGATAATAGAGAGAGGAGGGATGATAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
975164 GAGAGAAGAA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:975147 original size:18 final size:18
Alignment explanation
Indices: 975120--975169 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
975110 TGATAGGAGG
*
975120 AGAGACAGGAGAGATAAT
1 AGAGAGAGGAGAGATAAT
* *
975138 AGAGAGAGGAGGGATGAT
1 AGAGAGAGGAGAGATAAT
975156 AG-GAGGAGGAGAGA
1 AGAGA-GAGGAGAGA
975170 AGAAGATGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
17 2 0.07
18 25 0.93
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (18 bp):
AGAGAGAGGAGAGATAAT
Found at i:981045 original size:469 final size:468
Alignment explanation
Indices: 980119--981052 Score: 1270
Period size: 469 Copynumber: 2.0 Consensus size: 468
980109 CCCAATCATG
* *
980119 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTCTAC
1 AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCATGAACTTAGACTCAAC
*** * ** ** *
980184 GGTAAATGGTGGGATGAAAAGCCTTTCTTGTGAAACCAAAGCATCTATATCATGTATCCTTACAA
66 AAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACCAAAACATCTATATCATGTATCCTTACAA
* *
980249 GAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTATTATTAGAATTCATGTTTGT
131 GAAGAATGTGGTTATGGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATTCATGTTTGT
* * *
980314 CTGATTTAAGAGGCAAACTTTGATTCTATGAAAAATGGTGGGAAAAAAGCTTTTCTTGCAAAGCC
196 CTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGAAAAAAAGCTTTTCTTGCAAAGCC
* * *
980379 AAACCATCAATGTCATGAATCCCAATGAGGATTTTTGGTACCCTATCATTGAAAGAATGGAAACT
261 AAACCATCAATGTCATGAATCCAAATGAGGATTTTTGGTACCCAACCATTGAAAGAATGGAAACT
* *
980444 ATTATGAGAATCCATGTTTGACTCATTTAAGGGATAAACTTTGAATTTAAGGAAAATAGGGCAAA
326 ATTAAGAGAATCCATGTTTGACTCATTTAAGAGATAAACTTTGAATTTAAGGAAAATAGGGCAAA
*** * *
980509 GAAAAACTTTCCTTGCAAAGCCAAAGCATCAATATTGTGTATCATAATGATGAGAACGGGTTTAT
391 GAAAAACTTTCCTTGCAAAGCCAAAGCATCAATACCATGTATCACAATGAGGAGAACGGGTTTAT
980574 GGTGCCCAATAAC
456 GGTGCCCAATAAC
*
980587 AAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGC-TCGAACTTAGATTCA
1 AAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCAT-GAACTTAGACTCA
* *
980651 ACAAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACTAAAACAT-TAGTATCGTGTATCCTTA
64 ACAAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACCAAAACATCTA-TATCATGTATCCTTA
* * *
980715 TAAGAAGAATGTGGTTATGGTGTCTAATCTTGAAAAGAATGGGGATTATTATGAGAATTCATGTT
128 CAAGAAGAATGTGGTTATGGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATTCATGTT
** * * *
980780 TGTCTCATTTAAGAGATGAGCTTTGATTTTATGAAAAATGGTGATAAAAAAAGCTTTTCTTGCAA
193 TGTCTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTG-GAAAAAAAGCTTTTCTTGCAA
* * **
980845 AGCCAAACCATCAATGTCATGTATCTAAATGAGGATTTTTGGTGGCCAACCA-TGAATAGAATGG
257 AGCCAAACCATCAATGTCATGAATCCAAATGAGGATTTTTGGTACCCAACCATTGAA-AGAATGG
* * * *
980909 AAATTATTACAG-GAATCCATGTTTGTCTCATTTGAGAGATGAACTTTG-ATTTCAAGGAAAAT-
321 AAACTATTA-AGAGAATCCATGTTTGACTCATTTAAGAGATAAACTTTGAATTT-AAGGAAAATA
* * * * * * *
980971 GGATCAGAGAAAAGCTTTTCTTGCGAAGCGAAAGCATCAATACCATGTATCACAATGAGGAGAAT
384 GG-GCAAAGAAAAACTTTCCTTGCAAAGCCAAAGCATCAATACCATGTATCACAATGAGGAGAAC
*
981036 GTG-TTATGGTGCCCAAT
448 GGGTTTATGGTGCCCAAT
981053 CATGAAAAGA
Statistics
Matches: 405, Mismatches: 53, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
468 7 0.02
469 225 0.56
470 172 0.42
471 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.31
Consensus pattern (468 bp):
AAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTTATTTAAGGCATGAACTTAGACTCAAC
AAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACCAAAACATCTATATCATGTATCCTTACAA
GAAGAATGTGGTTATGGTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATTCATGTTTGT
CTCATTTAAGAGACAAACTTTGATTCTATGAAAAATGGTGGAAAAAAAGCTTTTCTTGCAAAGCC
AAACCATCAATGTCATGAATCCAAATGAGGATTTTTGGTACCCAACCATTGAAAGAATGGAAACT
ATTAAGAGAATCCATGTTTGACTCATTTAAGAGATAAACTTTGAATTTAAGGAAAATAGGGCAAA
GAAAAACTTTCCTTGCAAAGCCAAAGCATCAATACCATGTATCACAATGAGGAGAACGGGTTTAT
GGTGCCCAATAAC
Found at i:981604 original size:159 final size:156
Alignment explanation
Indices: 980106--982431 Score: 1064
Period size: 159 Copynumber: 14.9 Consensus size: 156
980096 AGAACAAGTT
* * * * * *
980106 GTGCCCAATCATGAAAAGAATGAAGATCATTACT-AGAATCCATGTTTGTCTTATTTGAG-GCAT
1 GTGCCTAATCTTGAAAAGAATGGAGATTATTA-TGAGAATCCATGTTTGTCTCATTTAAGAG-AT
* * **** * * * * *
980169 GAACTTAGACTCTACGGTAAATGGTGGGATGAAAAGCCTTTCTTGTGAAACCAAAGCATCTATAT
64 GAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAATAT
*
980234 CATGTATCCTTACA-AGAAGAATGTGTTTATG
128 CATGTATCC-TA-ATAG-AGAATGAGTTTATG
* * * ***
980265 GTGCCTAATCTTGAAAAGAATGGAGATTATTATTAGAATTCATGTTTGTCTGATTTAAGAGGCAA
1 GTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGA
* * * *
980330 ACTTTGATTCTATGAAAAATGGTGGGAA-AAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCA
66 ACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCAAA-CCAAAGCATCAATATCA
* * *
980394 TGAATCCCAAT-GAG---GA-TTTTTG
130 TGTATCCTAATAGAGAATGAGTTTATG
* * * * *
980416 GTACCCT-ATCATTG-AAAGAATGGAAACTATTATGAGAATCCATGTTTGACTCATTTAAGGGAT
1 GT-GCCTAATC-TTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGAT
* * * *
980479 AAACTTTGAATT-TA-AGGAAAATAGG-GCA-AAGAAAAACTTTCCTTGCAAAGCCAAAGCATCA
64 GAACTTTG-ATTCTATA-AAAAAT-GGTG-AGAAGAAAAGCTTTTCTTGCAAA-CCAAAGCATCA
** * * *
980540 ATATTGTGTATCATAATGATGAGAACGGGTTTATG
124 ATATCATGTATCCTAAT-A-GAGAATGAGTTTATG
* *** * * * *
980575 GTGCCCAAT-AACAAAAGGAATGAAGATCATTACT-AGAATCCATGTTTGTCTTATTTAAG-GCT
1 GTGCCTAATCTTGAAAA-GAATGGAGATTATTA-TGAGAATCCATGTTTGTCTCATTTAAGAGAT
* * * * * * * * * * *
980637 CGAACTTAGATTCAACAAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACTAAAACATTAGTA
64 -GAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATA
* * * *
980702 TCGTGTATCCTTATAAGAAGAATGTGGTTATG
127 TCATGTATCCTAAT-AG-AGAATGAGTTTATG
* * *
980734 GTGTCTAATCTTGAAAAGAATGGGGATTATTATGAGAATTCATGTTTGTCTCATTTAAGAGATGA
1 GTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGA
* * * * * * *
980799 GCTTTGATTTTATGAAAAATGGTGATAAAAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCA
66 ACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCAAA-CCAAAGCATCAATATCA
*
980864 TGTAT-CTAA-ATGAG---GA-TTTTTG
130 TGTATCCTAATA-GAGAATGAGTTTATG
* * * * * *
980886 GTGGCC-AACCATGAATAGAATGGAAATTATTA-CAGGAATCCATGTTTGTCTCATTTGAGAGAT
1 GT-GCCTAATCTTGAAAAGAATGGAGATTATTATGA-GAATCCATGTTTGTCTCATTTAAGAGAT
* * * *
980949 GAACTTTGATT-TCA-AGGAAAATGGATCAG-AGAAAAGCTTTTCTTGCGAAGCGAAAGCATCAA
64 GAACTTTGATTCT-ATA-AAAAATGG-TGAGAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAA
* *
981011 TACCATGTATCAC-AATGAGGAGAATGTG-TTATG
125 TATCATGTATC-CTAAT-A-GAGAATGAGTTTATG
* * * * * * *
981044 GTGCCCAATCATGAAAAG-ATGGAGATTGTTATGACAATCCAAGTTTGTCTCATTTAAGGGA-CA
1 GTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGA
* * * ** * * * * *
981107 AATTTCAATCCTATTGAAAATAGTGGGAAGAAAAGTTTTTCTTG-AGACACAAAAGCATCACTAT
66 ACTTT-GATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCA-A-ACCAAAGCATCAATAT
* *
981171 CATGTATTCC-AATAAAGGGAA-CATGTTT-T-
128 CATGTA-TCCTAAT--AGAGAATGA-GTTTATG
* * * * * *
981200 CTGTTCTCAATCTTCAAAAGAATGGAGACTACTATGAGAGA-CCATGGTTT-TCTCATTTAATAG
1 GTG-CCT-AATCTTGAAAAGAATGGAGATTATTATGAGA-ATCCAT-GTTTGTCTCATTTAAGAG
* * * *
981263 ATAAACTTTGATT-T-TAAGGAAAATGAG-GCA-AATAAAAGC-TTTCTTTGCAAAAGCAAATCA
62 ATGAACTTTGATTCTATAA--AAAATG-GTG-AGAAGAAAAGCTTTTC-TTGC-AAACCAAAGCA
* * * * *
981323 TCAATATTATATATCCTAACAAGGAGAACGTGTTTATG
121 TCAATATCATGTATCCTAA-TA-GAGAATGAGTTTATG
* ** * * * * *
981361 GTGCCTGATAATGAAAAAAAAT-GAAAGTCATTACT-AAAATCCACGTTTGTCTCATTTAAG-GC
1 GTGCCTAATCTTG-AAAAGAATGGAGA-TTATTA-TGAGAATCCATGTTTGTCTCATTTAAGAG-
* * * * * * *
981423 TTGAACTTAGACTCCATGAAAAATGGTGAGAAGAAAAGCTTTTCTTGCGAAATCAAAGCATAAAT
62 ATGAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAAT
*
981488 ATCATGTATCCTAATGAGATGAATGAGTTTTTG
126 ATCATGTATCCTAAT-AGA-GAATGAGTTTATG
* * *
981521 GTGACCTAATCTTGAAAATAATGGGGATTATTATGAGAATCCATG-TTGTCTTATTTAAGAGATG
1 GTG-CCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATG
* ** ** * * *
981585 AACTTTGATTCTATAAAAAATGGTG-G-TG-AAATTTTTTCTTG-AAAGGTAAATATCGTCAATG
65 AACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCAAA--CCAA-AGCATCAATA
* *
981646 TCATGTATCCCAATTAG-G-AT---TTT-TA
127 TCATGTATCCTAA-TAGAGAATGAGTTTATG
*** * * * * * *
981671 GTGTCC-AATCACAAAAAGAATAGAGACTATTATAAGAATCCATGTTTG-CTTCATTTGAGGGAC
1 GTG-CCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTC-TCATTTAAGAGAT
* * * * **
981734 GAGCTTTGATT-T-TAAGGAAAATAGGTCA-AAGAAAAGCATTTCTTGTGAAGTCAAAGCATCAA
64 GAACTTTGATTCTATAA--AAAAT-GGTGAGAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAA
* * *
981796 TATCCATG------AGTAGA-ACAT--GTTTGTA
125 TAT-CATGTATCCTAATAGAGA-ATGAGTTTATG
* * * * * * * *
981821 GTGTCC-AAT-TATGAAAAG-ATGAAGATTGTTACGAAAATCTAGGTTTGTCTCATTTGAGGGAT
1 GTG-CCTAATCT-TGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGAT
* * * * * * *
981883 GAACTTTGATTCTATCAAAAATGGGGAAAAGAAAAGTTTTTCTTGTGACACCAAAGCATCAATGT
64 GAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAATAT
* *
981948 CATGTATCCCAATGAAGGGAAAGTG-GTTT-TG
128 CATGTATCCTAAT--AGAG-AA-TGAGTTTATG
* * * * * * ** *
981979 GTTCCCAATCTTGAAAAGAATGGAGAATATTTTAAGAATCCACGTTCATCTCATCT-AGTAGATG
1 GTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAG-AGATG
* * * *
982043 AACTTTGATT-T-TAAGGAAAATGGGGTA-AAGAAAAGCTTTTCTTGTGAAACCAAATCATTAAT
65 AACTTTGATTCTATAA--AAAATGGTG-AGAAGAAAAGCTTTTCTTG-CAAACCAAAGCATCAAT
* * * * *
982105 ATCATATATCCTAATGATGAAAACGTGTTTGTG
126 ATCATGTATCCTAAT-A-GAGAATGAGTTTATG
* ** * * * * * *
982138 GTGCTTAATAATGAAAAGAATGAAGATCATCTCT-AGAATCCATGTTTGTCTCAATTGAG-GCAC
1 GTGCCTAATCTTGAAAAGAATGGAGATTAT-TATGAGAATCCATGTTTGTCTCATTTAAGAG-AT
* * * * * *
982201 AAACTTAGAATCTACAAAAAATGGTG-GAAGAAATGCCTTTCTTGCAAAACCAAAGCATCAATAT
64 GAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGC-AAACCAAAGCATCAATAT
* *
982265 AATGTATCCTAATTAGAAGAATGTGTTTATG
128 CATGTATCCTAA-TAG-AGAATGAGTTTATG
* * * * *
982296 GTGCATAATCTT-AAAGAGAATGGCGATTATTAT-AGGAATCCATGTTTATCTCATTCAAAAGAT
1 GTGCCTAATCTTGAAA-AGAATGGAGATTATTATGA-GAATCCATGTTTGTCTCATTTAAGAGAT
* * * * * * *
982359 GAACTTTAATTTTATGAAAAATGGTCATAAAAAAAGCTTTTCTTGCAAAGCCAAACCATCAATAT
64 GAACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCAAA-CCAAAGCATCAATAT
*
982424 CATTTATC
128 CATGTATC
982432 TCAATGAGGA
Statistics
Matches: 1624, Mismatches: 386, Indels: 314
0.70 0.17 0.14
Matches are distributed among these distances:
146 3 0.00
147 1 0.00
148 12 0.01
149 113 0.07
150 51 0.03
151 78 0.05
152 164 0.10
153 26 0.02
154 8 0.00
155 13 0.01
156 31 0.02
157 131 0.08
158 239 0.15
159 587 0.36
160 146 0.09
161 19 0.01
162 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (156 bp):
GTGCCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGA
ACTTTGATTCTATAAAAAATGGTGAGAAGAAAAGCTTTTCTTGCAAACCAAAGCATCAATATCAT
GTATCCTAATAGAGAATGAGTTTATG
Found at i:982458 original size:777 final size:773
Alignment explanation
Indices: 980251--982459 Score: 2256
Period size: 777 Copynumber: 2.8 Consensus size: 773
980241 CCTTACAAGA
* * * * * ** * * *
980251 AGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGAGATTATTATTAGAATTCATGTTTGTCT
1 AGAATGTG-TTATAGTGCCCAATCATGAAAAG-ATGAAGATTGTTACGAAAATCCAAGTTTGTCT
* * * * *
980316 GATTTAAGAGG-CAAACTTTGATTCTATGAAAAATGGTGGGAA-AAAAGCTTTTCTTGCAAAGCC
64 CATTTAAG-GGAC-AACTTTGATTCTATCAAAAAT-G-GGGAAGAAAAGTTTTTCTTGGACA-CC
* * * *
980379 AAACCATCAATGTCATGAATCCCAATG-A-GG--AT-TTTTGGTACCCTATCATTG-AAAGAATG
124 AAAGCATCAATGTCATGTATCCCAATGAAGGGAAATGTTTTGGTTCCCAATC-TTGAAAAGAATG
* * *
980438 GA-AACTATTATGAGAATCCATGTT-TGACTCATTTAAG-GGATAAACTTTGAATTTAAGGAAAA
188 GAGAA-TATTATGAGAATCCACGTTAT--CTCATTT-AGTAGATAAACTTTGATTTTAAGGAAAA
* * * * * * * *
980500 TAGGGCAAAGAAAAACTTTCCTTG-CAAAGCCAAAGCATCAATATTGTGTATCATAATGATGAGA
249 TGGGGCAAAGAAAAGCTTTTCTTGTGAAA-CCAAATCATCAATATTATATATCCTAATGATGAGA
* * * *
980564 ACGGGTTTATGGTGCCCAATAA-CAAAAGGAATGAAGATCATTACTAGAATCCATGTTTGTCTTA
313 ACGTGTTTATGGTGCCTAATAATGAAAA-GAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
980628 TTTAAGGCTCGAACTTAGATTCAACAAAAAATAGTGGGAACAAAAGCCTTTCTTGCAAAACTAAA
377 TTTAAGGCTCGAACTTAGAATCAACAAAAAATGGT-GGAAGAAAAGCCTTTCTTGCAAAACCAAA
* * * * * * *
980693 ACATTAGTATCGTGTATCCTTATAAGAAGAATGTGGTTATGGTGTCTAATCTTGAAAAGAATGGG
441 GCATAAATATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGACTAATCTTGAAAAGAATGGG
* *
980758 GATTATTATGAGAATTCATGTTTGTCTCATTTAAGAGATGAGCTTTGATTTTATGAAAAATGGTG
506 GATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTTTATGAAAAATGGTG
*
980823 ATAAAAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCTAAATGAGGATTTTTGGT
571 ATAAAAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCTCAATGAGGATTTTTGGT
* * ** * * * * *
980888 GGCCAACCATGAATAGAATGGAAATTATTACAGGAATCCATGTTTGTCTCATTTGAGAGATGAAC
636 -TCCAATCACAAAAAGAATAGAAACTATTACAAGAATCCATGTTTGTCTCATTTGAGAGACGAAC
* *
980953 TTTGATTTCAAGGAAAATGGATCAGAGAAAAGCTTTTCTTGCGAAGCGAAAGCATCAATACCATG
700 TTTGATTTCAAGGAAAATGGATCAAAGAAAAGCATTTCTTGCGAAGCGAAAGCATCAATACCATG
981018 TATCACAATGAGG
765 TAT---AATGA-G
* * * *
981031 AGAATGTGTTATGGTGCCCAATCATGAAAAGATGGAGATTGTTATGACAATCCAAGTTTGTCTCA
1 AGAATGTGTTATAGTGCCCAATCATGAAAAGATGAAGATTGTTACGAAAATCCAAGTTTGTCTCA
* * * ** *
981096 TTTAAGGGACAAATTTCAATCCTATTGAAAATAGTGGGAAGAAAAGTTTTTCTTGAGACACAAAA
66 TTTAAGGGACAACTTT-GATTCTATCAAAAAT-G-GGGAAGAAAAGTTTTTCTTG-GACACCAAA
* * * * * * *
981161 GCATCACTATCATGTATTCCAATAAAGGGAACATGTTTTCTGTTCTCAATCTTCAAAAGAATGGA
127 GCATCAATGTCATGTATCCCAATGAAGGGAA-ATGTTTT-GGTTCCCAATCTTGAAAAGAATGGA
* * * * * *
981226 GACTACTATGAGAGA-CCATGGTTTTCTCATTTAATAGATAAACTTTGATTTTAAGGAAAATGAG
190 GAATATTATGAGA-ATCCA-CGTTATCTCATTTAGTAGATAAACTTTGATTTTAAGGAAAATGGG
* * ** *
981290 GCAAATAAAAGC-TTTCTT-TGCAAAAGCAAATCATCAATATTATATATCCTAACAAGGAGAACG
253 GCAAAGAAAAGCTTTTCTTGTG--AAACCAAATCATCAATATTATATATCCTAATGATGAGAACG
* * * *
981353 TGTTTATGGTGCCTGATAATGAAAAAAAATGAA-AGTCATTACTAAAATCCACGTTTGTCTCATT
316 TGTTTATGGTGCCTAATAATG-AAAAGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTCATT
* * * ** * * *
981417 TAAGGCTTGAACTTAGACTCCATGAAAAATGGTGAGAAGAAAAGCTTTTCTTGCGAAATCAAAGC
379 TAAGGCTCGAACTTAGAATCAACAAAAAATGGTG-GAAGAAAAGCCTTTCTTGCAAAACCAAAGC
* * * * *
981482 ATAAATATCATGTATCCTAATGAGATGAATGAGTTTTTGGTGACCTAATCTTGAAAATAATGGGG
443 ATAAATATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGA-CTAATCTTGAAAAGAATGGGG
* * * *
981547 ATTATTATGAGAATCCATG-TTGTCTTATTTAAGAGATGAACTTTGATTCTATAAAAAATGGTGG
507 ATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTTTATGAAAAATGGTGA
* ** ** * * * * *
981611 T---GAAATTTTTTCTTG-AAAGGTAAATATCGTCAATGTCATGTATCCCAATTAGGATTTTTAG
572 TAAAAAAAGCTTTTCTTGCAAA-GCCAA-ACCATCAATGTCATGTATCTCAATGAGGATTTTTGG
* * *
981672 TGTCCAATCACAAAAAGAATAGAGACTATTATAAGAATCCATGTTTG-CTTCATTTGAGGGACGA
635 T-TCCAATCACAAAAAGAATAGAAACTATTACAAGAATCCATGTTTGTC-TCATTTGAGAGACGA
* * *
981736 GCTTTGATTTTAAGGAAAATAGG-TCAAAGAAAAGCATTTCTTGTGAAGTC-AAAGCATCAATAT
698 ACTTTGATTTCAAGGAAAAT-GGATCAAAGAAAAGCATTTCTTGCGAAG-CGAAAGCATCAATA-
981799 CCATG-AGT-A-GA-
760 CCATGTA-TAATGAG
* * * * * *
981810 A-CATGT-TTGTAGTGTCCAATTATGAAAAGATGAAGATTGTTACGAAAATCTAGGTTTGTCTCA
1 AGAATGTGTTATAGTGCCCAATCATGAAAAGATGAAGATTGTTACGAAAATCCAAGTTTGTCTCA
* *
981873 TTTGAGGGATGAACTTTGATTCTATCAAAAATGGGGAAAAGAAAAGTTTTTCTTGTGACACCAAA
66 TTTAAGGGA-CAACTTTGATTCTATCAAAAATGGGG--AAGAAAAGTTTTTCTTG-GACACCAAA
981938 GCATCAATGTCATGTATCCCAATGAAGGGAAAGTGGTTTTGGTTCCCAATCTTGAAAAGAATGGA
127 GCATCAATGTCATGTATCCCAATGAAGGGAAA-T-GTTTTGGTTCCCAATCTTGAAAAGAATGGA
* * * *
982003 GAATATTTTAAGAATCCACGTTCATCTCATCTAGTAGATGAACTTTGATTTTAAGGAAAATGGGG
190 GAATATTATGAGAATCCACGTT-ATCTCATTTAGTAGATAAACTTTGATTTTAAGGAAAATGGGG
* * * *
982068 TAAAGAAAAGCTTTTCTTGTGAAACCAAATCATTAATATCATATATCCTAATGATGAAAACGTGT
254 CAAAGAAAAGCTTTTCTTGTGAAACCAAATCATCAATATTATATATCCTAATGATGAGAACGTGT
* * * *
982133 TTGTGGTGCTTAATAATGAAAAGAATGAAGATCATCT-CTAGAATCCATGTTTGTCTCAATTGAG
319 TTATGGTGCCTAATAATGAAAAGAATGAAGATCAT-TACTAGAATCCATGTTTGTCTCATTTAAG
* * * * *
982197 GCACAAACTTAGAATCTACAAAAAATGGTGGAAGAAATGCCTTTCTTGCAAAACCAAAGCATCAA
383 GCTCGAACTTAGAATCAACAAAAAATGGTGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATAAA
* * *
982262 TATAATGTATCCTAATTAGAAGAATGTGTTTATGGTG-CATAATCTT-AAAGAGAATGGCGATTA
448 TATCATGTATCCTAATAAGAAGAATGTGTTTATGGTGAC-TAATCTTGAAA-AGAATGGGGATTA
* * * * *
982325 TTAT-AGGAATCCATGTTTATCTCATTCAAAAGATGAACTTTAATTTTATGAAAAATGGTCATAA
511 TTATGA-GAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTTTATGAAAAATGGTGATAA
* *
982389 AAAAAGCTTTTCTTGCAAAGCCAAACCATCAATATCATTTATCTCAATGAGGATTTTTGGTTCCC
575 AAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTCATGTATCTCAATGAGGATTTTTGGTT-CC
982454 AATCAC
639 AATCAC
982460 GAAATGATGG
Statistics
Matches: 1170, Mismatches: 207, Indels: 107
0.79 0.14 0.07
Matches are distributed among these distances:
773 5 0.00
774 31 0.03
775 102 0.09
776 67 0.06
777 299 0.26
778 87 0.07
779 62 0.05
780 11 0.01
781 4 0.00
782 1 0.00
783 3 0.00
784 17 0.01
785 145 0.12
786 128 0.11
787 165 0.14
788 43 0.04
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (773 bp):
AGAATGTGTTATAGTGCCCAATCATGAAAAGATGAAGATTGTTACGAAAATCCAAGTTTGTCTCA
TTTAAGGGACAACTTTGATTCTATCAAAAATGGGGAAGAAAAGTTTTTCTTGGACACCAAAGCAT
CAATGTCATGTATCCCAATGAAGGGAAATGTTTTGGTTCCCAATCTTGAAAAGAATGGAGAATAT
TATGAGAATCCACGTTATCTCATTTAGTAGATAAACTTTGATTTTAAGGAAAATGGGGCAAAGAA
AAGCTTTTCTTGTGAAACCAAATCATCAATATTATATATCCTAATGATGAGAACGTGTTTATGGT
GCCTAATAATGAAAAGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCTCGAAC
TTAGAATCAACAAAAAATGGTGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATAAATATCATGT
ATCCTAATAAGAAGAATGTGTTTATGGTGACTAATCTTGAAAAGAATGGGGATTATTATGAGAAT
CCATGTTTGTCTCATTTAAGAGATGAACTTTGATTTTATGAAAAATGGTGATAAAAAAAGCTTTT
CTTGCAAAGCCAAACCATCAATGTCATGTATCTCAATGAGGATTTTTGGTTCCAATCACAAAAAG
AATAGAAACTATTACAAGAATCCATGTTTGTCTCATTTGAGAGACGAACTTTGATTTCAAGGAAA
ATGGATCAAAGAAAAGCATTTCTTGCGAAGCGAAAGCATCAATACCATGTATAATGAG
Found at i:984428 original size:58 final size:58
Alignment explanation
Indices: 984326--984442 Score: 171
Period size: 58 Copynumber: 2.0 Consensus size: 58
984316 GAAGAATAAA
* * * *
984326 GCTTGGAGCCAAATTCACATGTCCAAGAAGAGTGAAGCCTAATTTGCATGTATTCATG
1 GCTTGGAGCCAAATTCAAATGTCCAAGAAAAGTGAAGCCCAATTTGCATATATTCATG
* * *
984384 GCTTGGAGCCCAATTCAAATGTCCAAGAAAAGTGGAGCCCAATTTGCATATATTTATG
1 GCTTGGAGCCAAATTCAAATGTCCAAGAAAAGTGAAGCCCAATTTGCATATATTCATG
984442 G
1 G
984443 GCCTATTGTT
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
58 52 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (58 bp):
GCTTGGAGCCAAATTCAAATGTCCAAGAAAAGTGAAGCCCAATTTGCATATATTCATG
Found at i:997646 original size:42 final size:42
Alignment explanation
Indices: 997592--997701 Score: 175
Period size: 42 Copynumber: 2.6 Consensus size: 42
997582 AAGAGAAAGA
* *
997592 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
997634 AGAGATAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
1 AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
* *
997676 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAAGAGGGATGATAGGAGGAG
997702 GAGAGAAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGAGAAGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1003346 original size:33 final size:33
Alignment explanation
Indices: 1003300--1003370 Score: 97
Period size: 33 Copynumber: 2.2 Consensus size: 33
1003290 TTCTTCTCTC
* * * * *
1003300 CTCCTCCTGTCATCCCTCCTCTCTCTATTGTCT
1 CTCCTCCTATCATCCATCCTATCTCTACTATCT
1003333 CTCCTCCTATCATCCATCCTATCTCTACTATCT
1 CTCCTCCTATCATCCATCCTATCTCTACTATCT
1003366 CTCCT
1 CTCCT
1003371 ATCTCTCCTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.11, C:0.45, G:0.03, T:0.41
Consensus pattern (33 bp):
CTCCTCCTATCATCCATCCTATCTCTACTATCT
Found at i:1003376 original size:42 final size:42
Alignment explanation
Indices: 1003330--1003409 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
1003320 CTCTCTATTG
1003330 TCTCTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTA
1 TCTCTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTA
* * *
1003372 TCTCTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCTCTCCTCCTATCATCCATCCTATCTCTACTATCTCT
1003410 TTGAGGGCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCATCCTATCTCTACTATCTCTCCTA
Found at i:1003377 original size:9 final size:9
Alignment explanation
Indices: 1003349--1003379 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
1003339 CTATCATCCA
1003349 TCCTATCTC
1 TCCTATCTC
*
1003358 TACTATCTC
1 TCCTATCTC
1003367 TCCTATCTC
1 TCCTATCTC
1003376 TCCT
1 TCCT
1003380 CCTATCATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.13, C:0.42, G:0.00, T:0.45
Consensus pattern (9 bp):
TCCTATCTC
Found at i:1003383 original size:12 final size:12
Alignment explanation
Indices: 1003366--1003400 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
1003356 TCTACTATCT
1003366 CTCCTATCTCTC
1 CTCCTATCTCTC
1003378 CTCCTATCATC-C
1 CTCCTATC-TCTC
1003390 CTCCTATCTCT
1 CTCCTATCTCT
1003401 TCTTTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1006279 original size:29 final size:29
Alignment explanation
Indices: 1006231--1006303 Score: 110
Period size: 29 Copynumber: 2.5 Consensus size: 29
1006221 CAATAAAAGC
* *
1006231 ATGGAGCCCAAATTGTGTGTCCAAGAAGA
1 ATGGAGCCCAATTTGCGTGTCCAAGAAGA
* *
1006260 ATGGAGCCCAATTTGCGTGTCTAGGAAGA
1 ATGGAGCCCAATTTGCGTGTCCAAGAAGA
1006289 ATGGAGCCCAATTTG
1 ATGGAGCCCAATTTG
1006304 TATATTCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 40 1.00
ACGTcount: A:0.30, C:0.18, G:0.29, T:0.23
Consensus pattern (29 bp):
ATGGAGCCCAATTTGCGTGTCCAAGAAGA
Found at i:1007834 original size:154 final size:157
Alignment explanation
Indices: 1007535--1007907 Score: 384
Period size: 154 Copynumber: 2.4 Consensus size: 157
1007525 TAGACTATAT
* * * *
1007535 CATTAGTTTTCAAGTTTAGGCACCATAAACACAATCTT-CTCATTAGGATACATGATATTAATGC
1 CATTAG-TTTCAAGATTAGGCACCATAAACAC-GT-TTCCTCATTAGGATACATGATATTGATGA
* * * ** * *
1007599 TTTAGTTTCACAAGAAAGGTTTTTTTCCCACCATTTTCTATAAAGTCTAAGTTCGTGCCTTAAAT
63 TTTAGTTTCACAAGAAAGCTTTTTTTCACACCATTTTCTATAAAATAAAAGTTCATCCCTTAAAT
*
1007664 GAGACAAACATGGATTCTAGTAA-TG-ATC
128 GAGAAAAACATGGATTCTAGTAATTGTATC
* *
1007692 CATTAGTTTCATGATT-GGCACCATAAACACGTTTCCTCAATAGGATACATGATATTGATGATTT
1 CATTAGTTTCAAGATTAGGCACCATAAACACGTTTCCTCATTAGGATACATGATATTGATGATTT
*
1007756 -GCTTTCGCAAGGAAAGCTTTTCTTT-AC-CCATTTTCCT-TAAAATAAAAGTTCATCCCTTAAA
66 AG-TTTCACAA-GAAAGCTTTT-TTTCACACCATTTT-CTATAAAATAAAAGTTCATCCCTTAAA
* * *
1007817 TGAGAAAAATATGGATTCTCGTAATTGTCTC
127 TGAGAAAAACATGGATTCTAGTAATTGTATC
** * * * * *
1007848 CATTCTTTTCAAGATTGGGAACCAAAAACTCGTTTCCTTCATTAGGATACAATGACATTG
1 CATTAGTTTCAAGATTAGGCACCATAAACACGTTTCC-TCATTAGGATAC-ATGATATTG
1007908 TTGTCTTTGT
Statistics
Matches: 180, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
153 3 0.02
154 81 0.45
155 28 0.16
156 26 0.14
157 23 0.13
158 11 0.06
159 8 0.04
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.35
Consensus pattern (157 bp):
CATTAGTTTCAAGATTAGGCACCATAAACACGTTTCCTCATTAGGATACATGATATTGATGATTT
AGTTTCACAAGAAAGCTTTTTTTCACACCATTTTCTATAAAATAAAAGTTCATCCCTTAAATGAG
AAAAACATGGATTCTAGTAATTGTATC
Found at i:1009579 original size:159 final size:158
Alignment explanation
Indices: 1007541--1010406 Score: 808
Period size: 159 Copynumber: 18.4 Consensus size: 158
1007531 ATATCATTAG
* * * * *
1007541 TTTTCAAGTTTAGGCACCATAAACACAATCTTCTCATT-AGGATACATGATATTAATGCTTTAG-
1 TTTTCAAGATTGGGCACCA-AAACACATTC-TCTCATTGAGGATACATGATATTGATGCTTTGGC
* * * * * * **
1007604 TTTCACAAG-AAAGGTTTT-TTTCCCACCATTTT-CTATAAAGTCTAAGTTCGTGCCTTAAATGA
64 TTT-GCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCT-TAAAATCAAAGTTCATTACTTAAATGA
* * *
1007666 GACAAACATGGATTCTAGTAAT-G-ATCCATTA
126 GACAAACATGGATTCTCGTAATAGTCTCCATTC
* * * * *
1007697 GTTTCATGATT-GGCACCATAAACACGTT-TCCTCAAT-AGGATACATGATATTGATGATTT-GC
1 TTTTCAAGATTGGGCACCA-AAACACATTCT-CTCATTGAGGATACATGATATTGATGCTTTGGC
* * * **
1007758 TTTCGCAAGGAAAGCTTTTCTTT-ACCCATTTTCCTTAAAATAAAAGTTCATCCCTTAAATGAGA
64 TTT-GCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGA
* * *
1007822 AAAATATGGATTCTCGTAATTGTCTCCATTC
128 CAAACATGGATTCTCGTAATAGTCTCCATTC
* * * * *
1007853 TTTTCAAGATTGGGAACCAAAAACTCGTT-TCCTTCATT-AGGATACAATGACATTGTTGTCTTT
1 TTTTCAAGATTGGGCACC-AAAACACATTCT-C-TCATTGAGGATAC-ATGATATTGATG-CTTT
* *** * *** * ** ** *
1007916 GTTG-TTT-CAGGGAAAA-CTTTTCTTTTAACTATTTTTGATAGAATCAAAGTTTGTCCCTTAGA
61 G--GCTTTGCA-AGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAA
* * * * *
1007978 TGAGACAAAC-TCAGATTGTCGCAACAATCTCCA-TC
123 TGAGACAAACAT-GGATTCTCGTAATAGTCTCCATTC
* * * **
1008013 TTTTCTTA-ATTGGGCACCATAAACACGTTCTCCTCA-T-----T-C---ATATTAACACTTTGG
1 TTTTC-AAGATTGGGCACCA-AAACACATTCT-CTCATTGAGGATACATGATATTGATGCTTTGG
* * * * * * * ** * *
1008067 CTTT-CTATGAAAAGCTTTTCTTTGACCTATTTT-TTTAAAATTAATGTTCGTCCCTCAAATCAG
63 CTTTGC-AAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAG
* *
1008130 ACAAACATAGATTCTTGT-A-A----CCATTC
127 ACAAACATGGATTCTCGTAATAGTCTCCATTC
* * * *** * *
1008156 TTTTCATGATTGGGTACC-AAA-A-A-TC-CTCATTG-GGACACATGACCCTGATGGTTTAGCTT
1 TTTTCAAGATTGGGCACCAAAACACATTCTCTCATTGAGGATACATGATATTGATGCTTTGGCTT
* * * * * * *
1008215 TGTAAGAAAAGCTTTT-TTTACCACTATTTTTCATAGAATCTAAGTTCATCT-CTTAAATGAGAC
66 TGCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCTTAAAATCAAAGTTCAT-TACTTAAATGAGAC
* * * *
1008278 AAACATAGATTCTCATAATAATC-CCTGTTC
129 AAACATGGATTCTCGTAATAGTCTCC-ATTC
* ** * ** ** *
1008308 TTTTGAAGATTAGGTGC-CTTAAACATCA-TCTTCTCATT-TGGATACACAATAACGATGCATTG
1 TTTTCAAGATT-GG-GCACCAAAACA-CATTC-TCTCATTGAGGATACATGATATTGATGCTTTG
* * * * * * * ** *
1008370 GTTTTGCAAGAAAGGCTTTTC-TTCCCACCATTTTCCATAGAGTCTAAGTTCATGCCTCAAATGA
62 GCTTTGCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGA
* *
1008434 GACAAACTTGGATTCTAGTAAT-GATC-CTCATTC
126 GACAAACATGGATTCTCGTAATAG-TCTC-CATTC
* * *
1008467 TTTCCAAGATTAGGCACCATAAACACATTCTTCTTATT-AGGATAC-----A-TGATGCTTTGG-
1 TTTTCAAGATTGGGCACCA-AAACACATTC-TCTCATTGAGGATACATGATATTGATGCTTTGGC
* * * * * * ** *
1008524 TTTCGTAAGAAAGGCTTTTC-TT-CCACTATTTT--TGTAGAGTCTAAGTTCATGGCTCAAATGA
64 TTT-GCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCT-TAAAATCAAAGTTCATTACTTAAATGA
* * * *
1008585 AATAAACATGGATTCTAGTAATGATTCT-CATTC
126 GACAAACATGGATTCTCGTAAT-AGTCTCCATTC
*** * *** * * * *
1008618 TTTTTTGTGATTGGCCACCATAAACTTGTTCTCCTCATT-AGGATCCAAGATATTAATGCTTTGT
1 -TTTTCAAGATTGGGCACCA-AAACACATTCT-CTCATTGAGGATACATGATATTGATGCTTTGG
*** * * * * ** *
1008682 CTTCATAAGGAAATCCTTTCTTTGCCCTACTTTTCCTTAAAATCAAAGTTCATCCCTTCAATGAG
63 CTTTGCAAGAAAAGCTTTTCTTTGCCCCA-TTTTCCTTAAAATCAAAGTTCATTACTTAAATGAG
* ** * * * *
1008747 ACAAACATGGATTGTTATAGTGGTTTTCATTC
127 ACAAACATGGATTCTCGTAATAGTCTCCATTC
** * * * * *
1008779 TTTTTTGACATTAGGAACCAAAA-ACATGT-TCCAATCATT-TGGATACATGATATTAATGCTTT
1 -TTTTCAAGATTGGGCACCAAAACACAT-TCT-C--TCATTGAGGATACATGATATTGATGCTTT
* * * * ** * *
1008841 GGGGTCT-CAAGAAAAACTTTTCTTT-CCACCACTTT-CTATTGAATCAAAGTTTA-TCCTTCAA
61 -GGCTTTGCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCT-TAAAATCAAAGTTCATTACTT-AA
* ** * ** * *
1008902 ATAAGACAAA-ATTAAATTGTCAAAACAATCTCCA-TC
122 ATGAGACAAACA-TGGATTCTCGTAATAGTCTCCATTC
* * * * * *
1008938 TTTTTATGATCGGGTAGCATAAACACAATCTTCTCATTG-GGATACATGATATTGATGCTTTGGC
1 TTTTCAAGATTGGGCACCA-AAACACATTC-TCTCATTGAGGATACATGATATTGATGCTTTGGC
* * * *
1009002 TTCT-CAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAG-T--TTCCTTAAATGAGA
64 TT-TGCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGA
*
1009063 CAAACATGGATTC-CTTTAATAGTCTCCATTC
128 CAAACATGGATTCTC-GTAATAGTCTCCATTC
* * * * * * *
1009094 TATTCATGGTTGGGCACC-AAA-A-A-TC-CTCATTTA-GATACATAACATTGATGGTTTGGCTT
1 TTTTCAAGATTGGGCACCAAAACACATTCTCTCATTGAGGATACATGATATTGATGCTTTGGCTT
* * * * * * * * * * * *
1009153 TGTAGGAAAAGCTTTTTTTTTACAACCATTTTTCATAGAATTAAAGTTCATCATTTAAATGGGAC
66 TGCAAGAAAAGC-TTTTCTTTGC-CCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGAC
* * *
1009218 AAACATGGATTCTCATAATAATCCCCATTC
129 AAACATGGATTCTCGTAATAGTCTCCATTC
* ** * * * **
1009248 TTTTCAAGATTAGGCATTATAAAAACATTCTTCTCATT-AGGATACACGATAATGATGCTTTGTT
1 TTTTCAAGATTGGGCACCA-AAACACATTC-TCTCATTGAGGATACATGATATTGATGCTTTGGC
* * * ** *** *
1009312 TTTGCAAGAAAAGCTTTTC-TT-CCCATATAATTTTAC-AAAAAGTTTAAGTTCACGCCTCAAAT
64 TTTGCAAGAAAAGCTTTTCTTTGCCC----CATTTTCCTTAAAA-TCAAAGTTCATTACTTAAAT
* * * * *
1009374 GAGACAAACATGGACTCTAGT-ATTGATTTTCATTC
124 GAGACAAACATGGATTCTCGTAATAG-TCTCCATTC
*** * *
1009409 TTTTTGTGATTGGGCACCATAAACCCATTCTCGTCA-TGAGGATACATAATATTGATGCTTTGGC
1 TTTTCAAGATTGGGCACCA-AAACACATTCTC-TCATTGAGGATACATGATATTGATGCTTTGGC
* * * *
1009473 TTTGCAAGGAAAGCATTTCTTTGCCCCATTTTCCTTGAAATCAAAGTTCATTACTTAAATAAGAC
64 TTTGCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGAC
* *
1009538 AAACATGAATTCTCGTAATAGTCACCATTC
129 AAACATGGATTCTCGTAATAGTCTCCATTC
** * * *
1009568 TTTTCAAGATTGGAAACCAAAAGCACATTCCCTTCATTG-GGATACATGACATTGATGCTTT-GA
1 TTTTCAAGATTGGGCACCAAAA-CACATTCTC-TCATTGAGGATACATGATATTGATGCTTTGGC
* * * ** ** * * * ** **
1009631 TGTCGCAAGAAAAACTTTTCTTT-CTACTTTTTTCAATAGACTTAAAGTTTGTCCCTTAAA--AG
64 T-TTGCAAGAAAAGCTTTTCTTTGC-CCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAG
** * * * * * *
1009693 ATGAACTTTGATTGTTGTAACAATCTCCATT-
127 ACAAACATGGATTCTCGTAATAGTCTCCATTC
* ** * * * * *
1009724 TTTCCTTGATCGAGCACCATAAACACGTTCTC-C--T---CAT-C--GATATTGATGCTTTGGAT
1 TTTTCAAGATTGGGCACCA-AAACACATTCTCTCATTGAGGATACATGATATTGATGCTTTGGCT
* * * ** * *
1009780 TTGCAAGAAAAGCTTTTCTTTGACCTATTTTCC-TAAAAGTGAAAGTTCATCCCTCAAATGAGAT
65 TTGCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAA-TCAAAGTTCATTACTTAAATGAGAC
*
1009844 AAACATGGATTCTTGTAATAGTC-CCTATTC
129 AAACATGGATTCTCGTAATAGTCTCC-ATTC
** * * * *
1009874 TTTTTGTA-ATTGGGCACC-AAA-A-A-TC-CTTATT-AGGATATTATATGACATTGATGGTTTG
1 -TTTTCAAGATTGGGCACCAAAACACATTCTCTCATTGAGG--A-TACATGATATTGATGCTTTG
* * ** * * * * *
1009932 CCTTTGCAAGGAAAGC-TTTCTTTGCCATTATTTTTCATAGAATCAAAGTTCATCT-TTTAAAGG
62 GCTTTGCAAGAAAAGCTTTTCTTTGCC-CCATTTTCCTTAAAATCAAAGTTCAT-TACTTAAATG
* * * * * *
1009995 AAACTAAGATGGATTCTCATAATAATCCCCATTC
125 AGACAAACATGGATTCTCGTAATAGTCTCCATTC
* * * * * * * * * * *
1010029 TTCTAAAGATTAGGTACCACAAATACATTCTCATAACT-AGGATATAGGATATTGATGATTTGGT
1 TTTTCAAGATTGGGCACCA-AAACACATTCTC-TCATTGAGGATACATGATATTGATGCTTTGGC
* * * * * ** ** *
1010093 TTTGCAAGAAAGGCTTTT-TCTTCCCACCATTTT-TTGTAGAGTCAAAGTTTGTCCCTCAAATGA
64 TTTGCAAGAAAAGCTTTTCT-TTGCC-CCATTTTCCT-TAAAATCAAAGTTCATTACTTAAATGA
** *
1010156 GACAAACATGGATT-TAATAAT-GATCTTCATT-
126 GACAAACATGGATTCTCGTAATAG-TCTCCATTC
* * * * * * *
1010187 TTTTCATGATTAGGCACCATAAAGAAATTATCCTCATT-AGGATACATGATATTGATGATTT-GT
1 TTTTCAAGATTGGGCACCA-AAACACATTCT-CTCATTGAGGATACATGATATTGATGCTTTGGC
* * * **
1010250 TTTCACAAGAAAAGCTTTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATGAGA
64 TTT-GCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGA
** *
1010315 CAAACAAAGATTCTCGTAATAATCTCCATTC
128 CAAACATGGATTCTCGTAATAGTCTCCATTC
** * * * *
1010346 TTTTTCAAGATAAGGAACCAAAAACACATTCCCTTCGA-T-AGGATGCATGACATTGATGCTT
1 -TTTTCAAGATTGGGCACC-AAAACACATTCTC-TC-ATTGAGGATACATGATATTGATGCTT
1010407 ATTATCTTAA
Statistics
Matches: 2015, Mismatches: 513, Indels: 360
0.70 0.18 0.12
Matches are distributed among these distances:
136 4 0.00
137 1 0.00
138 2 0.00
140 1 0.00
141 3 0.00
142 4 0.00
143 16 0.01
144 5 0.00
145 32 0.02
146 39 0.02
147 59 0.03
148 53 0.03
149 86 0.04
150 20 0.01
151 76 0.04
152 62 0.03
153 32 0.02
154 154 0.08
155 134 0.07
156 74 0.04
157 102 0.05
158 190 0.09
159 340 0.17
160 209 0.10
161 299 0.15
162 14 0.01
163 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
TTTTCAAGATTGGGCACCAAAACACATTCTCTCATTGAGGATACATGATATTGATGCTTTGGCTT
TGCAAGAAAAGCTTTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATTACTTAAATGAGACAA
ACATGGATTCTCGTAATAGTCTCCATTC
Found at i:1010318 original size:778 final size:775
Alignment explanation
Indices: 1008985--1010406 Score: 1777
Period size: 781 Copynumber: 1.8 Consensus size: 775
1008975 TGGGATACAT
*
1008985 GATATTGATGCTTTGGCTTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
1 GATATTGATGCTTTGGATTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
* **
1009050 TCCTTAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATGGTTGGGCACCAAA
66 TCCTCAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATAATTGGGCACCAAA
* * *
1009115 AATCCTCATTTAGATACATAACATTGATGGTTTGGCTTTGTAGGAAAAGCTTTTTTTTTACAACC
131 AATCCTCATTTAGATACATAACATTGATGGTTTGCCTTTGAAGGAAAAGC-TTTTCTTTACAACC
* *
1009180 ATTTTTCATAGAATTAAAGTTCATCATTTAAATGGGACAAACATGGATTCTCATAATAATCCCCA
195 ATTTTTCATAGAATCAAAGTTCATCATTTAAATGGAACAAACATGGATTCTCATAATAATCCCCA
* * ** * * * *
1009245 TTCTTTTCAAGATTAGGCATTATAAAAACATTCTTCTCATTAGGATACACGATAATGATGCTTTG
260 TTCTTCTAAAGATTAGGCACCACAAAAACATTCTTCTAACTAGGATACACGATAATGATGATTTG
* *
1009310 TTTTTGCAAGAAAAGCTTTTCTTCCCATATAATTTTACAAAAAGTTTAAGTTCACGCCTCAAATG
325 GTTTTGCAAGAAAAGCTTTTCTTCCCACATAATTTTACAAAAAGTTT-AGTT-ACGCCTCAAATG
* * * ** * ** *
1009375 AGACAAACATGGACTCTAGTATTGATTTTCATTCTTTTTGTGATTGGGCACCATAAACCCATTCT
388 AGACAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGCACCATAAACAAATTAT
* * * *
1009440 CGTCATGAGGATACATAATATTGATGCTTTGGCTTTGCAAGGAAAGCATTTCTTTGCCCCATTTT
453 CCTCATGAGGATACATAATATTGATGATTTGGCTTTACAAGAAAAGCATTTCTTTGCCCCATTTT
* * * *
1009505 CCTTGAAATCAAAGTTCATTACTTAAATAAGACAAAC-ATGAATTCTCGTAATAGTCACCATTC-
518 CCTTAAAATCAAAGTTCATCACTTAAATAAGACAAACAAAG-ATTCTCGTAATAATCACCATTCT
* * *
1009568 TTTTCAAGAT-TGGAAACCAAAAGCACATTCCCTTC-ATTGGGATACATGACATTGATGCTTTGA
582 TTTTCAAGATAAGG-AACCAAAAACACATTCCCTTCGA-TAGGATACATGACATTGATGCTTTGA
1009631 TGTCGCAAGAAAAACTTTTCTTTCTACTTTTTTCAATAGACTTAAAGTTTGTCCCTTAAAAGATG
645 TGTCGCAAGAAAAACTTTTCTTTCTACTTTTTTCAATAGACTTAAAGTTTGTCCCTTAAAAGATG
1009696 AACTTTGATTGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCAT
710 AACTTTGATTGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCAT
1009761 C
775 C
* * *
1009762 GATATTGATGCTTTGGATT-TGCAAGAAAAGCTTTTCTTTGACCTATTTTCCT-AAAAGTGAAAG
1 GATATTGATGCTTTGGATTCT-CAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAA-TCAAAG
* * **
1009825 TTCATCCCTCAAATGAGATAAACATGGATT-CTTGTAATAGTC-CCTATTCTTTTTGTAATTGGG
64 TT--T-CCTCAAATGAGACAAACATGGATTCCTT-TAATAGTCTCC-ATTCTATTCATAATTGGG
* *
1009888 CACCAAAAATCCTTA-TTAGGATATTATATGACATTGATGGTTTGCCTTTGCAAGG-AAAGC-TT
124 CACCAAAAATCCTCATTTA-GATA-CATA--ACATTGATGGTTTGCCTTTG-AAGGAAAAGCTTT
* * ** * * *
1009950 TCTTTGCCATTATTTTTCATAGAATCAAAGTTCATCTTTTAAA-GGAAACTAAGATGGATTCTCA
184 TCTTTACAACCATTTTTCATAGAATCAAAGTTCATCATTTAAATGG-AACAAACATGGATTCTCA
* * * *
1010014 TAATAATCCCCATTCTTCTAAAGATTAGGTACCACAAATACATTC-TCATAACTAGGATATAGGA
248 TAATAATCCCCATTCTTCTAAAGATTAGGCACCACAAAAACATTCTTC-TAACTAGGATACACGA
* * ** * *
1010078 TATTGATGATTTGGTTTTGCAAGAAAGGCTTTTTCTTCCCACCATTTTTTGTAGAGTCAAAGTTT
312 TAATGATGATTTGGTTTTGCAAGAAAAGC-TTTTCTTCCCA-CATAATTT-TACA--AAAAGTTT
*
1010143 -G-T-C-CCTCAAATGAGACAAACATGGA-TTTAATAATGATCTTCATT-TTTTCATGATTAGGC
372 AGTTACGCCTCAAATGAGACAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGC
* * * * *
1010202 ACCATAAAGAAATTATCCTCATTAGGATACATGATATTGATGATTT-GTTTTCACAAGAAAAGCT
437 ACCATAAACAAATTATCCTCATGAGGATACATAATATTGATGATTTGGCTTT-ACAAGAAAAGCA
* * * *
1010266 TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAACAAAGATTCTCG
501 TTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAACAAAGATTCTCG
* *
1010331 TAATAATCTCCATTCTTTTTCAAGATAAGGAACCAAAAACACATTCCCTTCGATAGGATGCATGA
566 TAATAATCACCATTCTTTTTCAAGATAAGGAACCAAAAACACATTCCCTTCGATAGGATACATGA
1010396 CATTGATGCTT
631 CATTGATGCTT
1010407 ATTATCTTAA
Statistics
Matches: 544, Mismatches: 77, Indels: 46
0.82 0.12 0.07
Matches are distributed among these distances:
776 5 0.01
777 58 0.11
778 127 0.23
779 77 0.14
780 90 0.17
781 132 0.24
782 11 0.02
783 30 0.06
784 7 0.01
786 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (775 bp):
GATATTGATGCTTTGGATTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
TCCTCAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATAATTGGGCACCAAA
AATCCTCATTTAGATACATAACATTGATGGTTTGCCTTTGAAGGAAAAGCTTTTCTTTACAACCA
TTTTTCATAGAATCAAAGTTCATCATTTAAATGGAACAAACATGGATTCTCATAATAATCCCCAT
TCTTCTAAAGATTAGGCACCACAAAAACATTCTTCTAACTAGGATACACGATAATGATGATTTGG
TTTTGCAAGAAAAGCTTTTCTTCCCACATAATTTTACAAAAAGTTTAGTTACGCCTCAAATGAGA
CAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGCACCATAAACAAATTATCCT
CATGAGGATACATAATATTGATGATTTGGCTTTACAAGAAAAGCATTTCTTTGCCCCATTTTCCT
TAAAATCAAAGTTCATCACTTAAATAAGACAAACAAAGATTCTCGTAATAATCACCATTCTTTTT
CAAGATAAGGAACCAAAAACACATTCCCTTCGATAGGATACATGACATTGATGCTTTGATGTCGC
AAGAAAAACTTTTCTTTCTACTTTTTTCAATAGACTTAAAGTTTGTCCCTTAAAAGATGAACTTT
GATTGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCATC
Found at i:1010421 original size:778 final size:772
Alignment explanation
Indices: 1008985--1010504 Score: 1759
Period size: 778 Copynumber: 2.0 Consensus size: 772
1008975 TGGGATACAT
*
1008985 GATATTGATGCTTTGGCTTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
1 GATATTGATGCTTTGGATTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
* **
1009050 TCCTTAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATGGTTGGGCACCAAA
66 TCCTCAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATAATTGGGCACCAAA
* * *
1009115 AATCCTCATTTAGATACATAACATTGATGGTTTGGCTTTGTAGGAAAAGCTTTTTTTTTACAACC
131 AATCCTCATTTAGATACATAACATTGATGGTTTGCCTTTGAAGGAAAAGC-TTTTCTTTACAACC
* *
1009180 ATTTTTCATAGAATTAAAGTTCATCATTTAAATGGGACAAACATGGATTCTCATAATAATCCCCA
195 ATTTTTCATAGAATCAAAGTTCATCATTTAAATGGAACAAACATGGATTCTCATAATAATCCCCA
* * ** * * * *
1009245 TTCTTTTCAAGATTAGGCATTATAAAAACATTCTTCTCATTAGGATACACGATAATGATGCTTTG
260 TTCTTCTAAAGATTAGGCACCACAAAAACATTCTTCTAACTAGGATACACGATAATGATGATTTG
* *
1009310 TTTTTGCAAGAAAAGCTTTTCTTCCCATATAATTTTACAAAAAGTTTAAGTTCACGCCTCAAATG
325 GTTTTGCAAGAAAAGCTTTTCTTCCCACATAATTTTACAAAAAGTTT-AGTT-ACGCCTCAAATG
* * * ** * ** *
1009375 AGACAAACATGGACTCTAGTATTGATTTTCATTCTTTTTGTGATTGGGCACCATAAACCCATTCT
388 AGACAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGCACCATAAACAAATTAT
* * * *
1009440 CGTCATGAGGATACATAATATTGATGCTTTGGCTTTGCAAGGAAAGCATTTCTTTGCCCCATTTT
453 CCTCATGAGGATACATAATATTGATGATTTGGCTTTACAAGAAAAGCATTTCTTTGCCCCATTTT
* * * *
1009505 CCTTGAAATCAAAGTTCATTACTTAAATAAGACAAACATGAATTCTCGTAATAGTCACCATTCTT
518 CCTTAAAATCAAAGTTCATCACTTAAATAAGACAAACAAGAATTCTCGTAATAATCACCATTCTT
* * * *
1009570 TTCAAGATTGGAAACCAAAAGCACATTCCCTTCATTGGGATACATGACATTGATGCTTTGATGTC
583 TTCAAGATAGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT-ATATC
* * ** * * * **
1009635 GCAAGAAAAACTTTTCTTTCTACTTTTTTCAATAGACTTAAAGTTTGTCCCTTAAA-AGATGAAC
647 GCAAGAAAAAC-ATT-TTTCCACCATTTTCAATAGAATCAAAGTTTGTCCCTCAAAGAGACAAAC
* *
1009699 TTTGATTGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCATC
710 TTAGATAGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCATC
* * *
1009762 GATATTGATGCTTTGGATT-TGCAAGAAAAGCTTTTCTTTGACCTATTTTCCT-AAAAGTGAAAG
1 GATATTGATGCTTTGGATTCT-CAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAA-TCAAAG
* * **
1009825 TTCATCCCTCAAATGAGATAAACATGGATT-CTTGTAATAGTC-CCTATTCTTTTTGTAATTGGG
64 TT--T-CCTCAAATGAGACAAACATGGATTCCTT-TAATAGTCTCC-ATTCTATTCATAATTGGG
* *
1009888 CACCAAAAATCCTTA-TTAGGATATTATATGACATTGATGGTTTGCCTTTGCAAGG-AAAGC-TT
124 CACCAAAAATCCTCATTTA-GATA-CATA--ACATTGATGGTTTGCCTTTG-AAGGAAAAGCTTT
* * ** * * *
1009950 TCTTTGCCATTATTTTTCATAGAATCAAAGTTCATCTTTTAAA-GGAAACTAAGATGGATTCTCA
184 TCTTTACAACCATTTTTCATAGAATCAAAGTTCATCATTTAAATGG-AACAAACATGGATTCTCA
* * * *
1010014 TAATAATCCCCATTCTTCTAAAGATTAGGTACCACAAATACATTC-TCATAACTAGGATATAGGA
248 TAATAATCCCCATTCTTCTAAAGATTAGGCACCACAAAAACATTCTTC-TAACTAGGATACACGA
* * ** * *
1010078 TATTGATGATTTGGTTTTGCAAGAAAGGCTTTTTCTTCCCACCATTTTTTGTAGAGTCAAAGTTT
312 TAATGATGATTTGGTTTTGCAAGAAAAGC-TTTTCTTCCCA-CATAATTT-TACA--AAAAGTTT
*
1010143 -G-T-C-CCTCAAATGAGACAAACATGGA-TTTAATAATGATCTTCATT-TTTTCATGATTAGGC
372 AGTTACGCCTCAAATGAGACAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGC
* * * * *
1010202 ACCATAAAGAAATTATCCTCATTAGGATACATGATATTGATGATTT-GTTTTCACAAGAAAAGCT
437 ACCATAAACAAATTATCCTCATGAGGATACATAATATTGATGATTTGGCTTT-ACAAGAAAAGCA
* * * *
1010266 TTTCTTTGCTCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATGAGACAAACAA-AGATTCTC
501 TTTCTTTGCCCCATTTTCCTTAAAATCAAAGTTCATCACTTAAATAAGACAAACAAGA-ATTCTC
* *
1010330 GTAATAATCTCCATTCTTTTTCAAGATAAGG-AACCAAAAACACATTCCCTTCGA-TAGGATGCA
565 GTAATAATCACCATTC-TTTTCAAGAT-AGGAAACCAAAAACACATTCCCTTC-ATTAGGATACA
** * *
1010393 TGACATTGATGC-TTATTATCTTAAGAAAAACATTTTTCCACCATTTTCGATGGAATCAAAGTTT
627 TGACATTGATGCTTTA-TATCGCAAGAAAAACATTTTTCCACCATTTTCAATAGAATCAAAGTTT
*
1010457 GTCCCTCAAATGAGACAAACTTAGATAGTTGTAACAATCTCCGTTTTT
691 GTCCCTCAAA-GAGACAAACTTAGATAGTTGTAACAATCTCCATTTTT
1010505 TAATGATTAG
Statistics
Matches: 622, Mismatches: 94, Indels: 53
0.81 0.12 0.07
Matches are distributed among these distances:
776 37 0.06
777 62 0.10
778 173 0.28
779 73 0.12
780 90 0.14
781 132 0.21
782 11 0.02
783 30 0.05
784 7 0.01
786 7 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (772 bp):
GATATTGATGCTTTGGATTCTCAAGAAAAGCTTTACTTTGACCCATTTTCCTCAAAATCAAAGTT
TCCTCAAATGAGACAAACATGGATTCCTTTAATAGTCTCCATTCTATTCATAATTGGGCACCAAA
AATCCTCATTTAGATACATAACATTGATGGTTTGCCTTTGAAGGAAAAGCTTTTCTTTACAACCA
TTTTTCATAGAATCAAAGTTCATCATTTAAATGGAACAAACATGGATTCTCATAATAATCCCCAT
TCTTCTAAAGATTAGGCACCACAAAAACATTCTTCTAACTAGGATACACGATAATGATGATTTGG
TTTTGCAAGAAAAGCTTTTCTTCCCACATAATTTTACAAAAAGTTTAGTTACGCCTCAAATGAGA
CAAACATGGACTCTAATAATGATCTTCATTCTTTTCATGATTAGGCACCATAAACAAATTATCCT
CATGAGGATACATAATATTGATGATTTGGCTTTACAAGAAAAGCATTTCTTTGCCCCATTTTCCT
TAAAATCAAAGTTCATCACTTAAATAAGACAAACAAGAATTCTCGTAATAATCACCATTCTTTTC
AAGATAGGAAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTATATCGCAA
GAAAAACATTTTTCCACCATTTTCAATAGAATCAAAGTTTGTCCCTCAAAGAGACAAACTTAGAT
AGTTGTAACAATCTCCATTTTTCCTTGATCGAGCACCATAAACACGTTCTCCTCATC
Found at i:1012196 original size:12 final size:12
Alignment explanation
Indices: 1012176--1012231 Score: 71
Period size: 12 Copynumber: 4.7 Consensus size: 12
1012166 AGAAAAAAGA
1012176 GATAGGAGGGAT
1 GATAGGAGGGAT
*
1012188 GAAAGGAGGAGA-
1 GATAGGAGG-GAT
1012200 GATAGGAGGGAT
1 GATAGGAGGGAT
1012212 GATAGGAGGAGA-
1 GATAGGAGG-GAT
1012224 GATAGGAG
1 GATAGGAG
1012232 AGATAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
11 2 0.05
12 33 0.85
13 4 0.10
ACGTcount: A:0.39, C:0.00, G:0.50, T:0.11
Consensus pattern (12 bp):
GATAGGAGGGAT
Found at i:1012200 original size:24 final size:24
Alignment explanation
Indices: 1012173--1012231 Score: 109
Period size: 24 Copynumber: 2.5 Consensus size: 24
1012163 AAGAGAAAAA
1012173 AGAGATAGGAGGGATGAAAGGAGG
1 AGAGATAGGAGGGATGAAAGGAGG
*
1012197 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGGGATGAAAGGAGG
1012221 AGAGATAGGAG
1 AGAGATAGGAG
1012232 AGATAATAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.41, C:0.00, G:0.49, T:0.10
Consensus pattern (24 bp):
AGAGATAGGAGGGATGAAAGGAGG
Found at i:1012247 original size:24 final size:25
Alignment explanation
Indices: 1012173--1012240 Score: 104
Period size: 24 Copynumber: 2.8 Consensus size: 25
1012163 AAGAGAAAAA
1012173 AGAGATAGGAGGGATGA-AAGGAGG
1 AGAGATAGGAGGGATGATAAGGAGG
1012197 AGAGATAGGAGGGATGAT-AGGAGG
1 AGAGATAGGAGGGATGATAAGGAGG
* *
1012221 AGAGATAGGAGAGATAATAA
1 AGAGATAGGAGGGATGATAA
1012241 AGAGAGAAGG
Statistics
Matches: 40, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
24 39 0.98
25 1 0.03
ACGTcount: A:0.44, C:0.00, G:0.44, T:0.12
Consensus pattern (25 bp):
AGAGATAGGAGGGATGATAAGGAGG
Found at i:1012268 original size:21 final size:22
Alignment explanation
Indices: 1012206--1012268 Score: 53
Period size: 21 Copynumber: 3.0 Consensus size: 22
1012196 GAGAGATAGG
*
1012206 AGGGATGATAGGAGGA-GAGAT
1 AGGGATGATAAGAGGAGGAGAT
* *
1012227 AGGAGA-GATAATA-AAGAGAGA-
1 AGG-GATGATAAGAGGAG-GAGAT
1012248 AGGGATGATAAGAGGAGGAGA
1 AGGGATGATAAGAGGAGGAGA
1012269 GAAGAAGATG
Statistics
Matches: 32, Mismatches: 5, Indels: 10
0.68 0.11 0.21
Matches are distributed among these distances:
20 3 0.09
21 21 0.66
22 8 0.25
ACGTcount: A:0.46, C:0.00, G:0.43, T:0.11
Consensus pattern (22 bp):
AGGGATGATAAGAGGAGGAGAT
Found at i:1013793 original size:22 final size:22
Alignment explanation
Indices: 1013749--1013793 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
1013739 AGCAAAAGTG
** *
1013749 GAGAGAAAAATTAGTGTGAAAA
1 GAGAGAAAAAGAAGTGAGAAAA
*
1013771 GAGAGAAAAAGAAGTGAGGAAA
1 GAGAGAAAAAGAAGTGAGAAAA
1013793 G
1 G
1013794 CTTTGTTGGC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.11
Consensus pattern (22 bp):
GAGAGAAAAAGAAGTGAGAAAA
Found at i:1018529 original size:316 final size:311
Alignment explanation
Indices: 1018126--1018736 Score: 689
Period size: 316 Copynumber: 1.9 Consensus size: 311
1018116 CCCATTGAAC
* ** * *
1018126 GGAATGTGTTTTTGGTTCCTTATCTTAGAAAGAATGGAGACTATTATGAGAATCCTTGTTTCTAT
1 GGAATGTGTTTATGGAGCCTAATCTTAGAAAGAATGGAGACTATTATGAGAATCCTTGTTACTAT
** * * * *
1018191 CATTTAAGGGATGAACTTTGATTTTAAGGAAAAT-GGGGCAAAAAAATACTTTTCTTGTGAAAG-
66 CATTTAAAAGATGAACTTTGATTCTAAGAAAAATAGGGGCAAAAAAA-ACTTTCCTTGCG-AAGC
* *
1018254 CAAATCATCAATATCATGTATCCTAATAAGGATATGCGTTTATGGTGCCCAATCATGAAAA-AAT
129 CAAACCATCAATATCATGTATCCCAATAAGG--AT---TTT-TGGTGCCCAATCATGAAAAGAAT
** * * *
1018318 GAAGA-TCATTATTA-AATCCATGCTTGTCTCATTTGAGGGACGAACTTAGAC-TCTACAAAAAA
188 GAAGACT-ATTACAAGAATCCATGCTTATCTCATTTGAAGGACAAACTTAGACTTCTA-AAAAAA
** *
1018380 T-GGTGGGAAGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCCTGTTTCCTAGTGATG
251 TAGGT-CAAAG-AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTTTCCTAGTGATG
* * * *
1018442 GGAATGTGTTTATGGAGCCTAATCTTTA-AAAGAATGGGGATTATTATGAGAATCCTTGTTAGTT
1 GGAATGTGTTTATGGAGCCTAATC-TTAGAAAGAATGGAGACTATTATGAGAATCCTTGTTACTA
* * * * * *
1018506 TCATTTAAAAGATGAAGTTTGATTCTATGAAAAATAGTGGCAAAGAAAGCTTTCCTTGCGGAGCC
65 TCATTTAAAAGATGAACTTTGATTCTAAGAAAAATAGGGGCAAAAAAAACTTTCCTTGCGAAGCC
* * *
1018571 AAACCATCAATGTCATGTATCCCAATAAGGATTTTTGGTGCCCAATTATGAAAAGAATGGAGACT
130 AAACCATCAATATCATGTATCCCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGAAGACT
* * * **
1018636 ATTACAAGAATCCATGTTTATCTCATTTGAAGGACAAACTTTGACTTTTAGGAAAATAGGTCAAA
195 ATTACAAGAATCCATGCTTATCTCATTTGAAGGACAAACTTAGACTTCTAAAAAAATAGGTCAAA
*
1018701 GAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATC
260 GAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
1018737 GATGAGGAGA
Statistics
Matches: 247, Mismatches: 40, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
310 18 0.07
311 48 0.19
312 41 0.17
313 6 0.02
314 2 0.01
315 2 0.01
316 117 0.47
317 13 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (311 bp):
GGAATGTGTTTATGGAGCCTAATCTTAGAAAGAATGGAGACTATTATGAGAATCCTTGTTACTAT
CATTTAAAAGATGAACTTTGATTCTAAGAAAAATAGGGGCAAAAAAAACTTTCCTTGCGAAGCCA
AACCATCAATATCATGTATCCCAATAAGGATTTTTGGTGCCCAATCATGAAAAGAATGAAGACTA
TTACAAGAATCCATGCTTATCTCATTTGAAGGACAAACTTAGACTTCTAAAAAAATAGGTCAAAG
AAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCCTGTTTCCTAGTGATG
Found at i:1018534 original size:779 final size:775
Alignment explanation
Indices: 1017345--1019058 Score: 1906
Period size: 779 Copynumber: 2.2 Consensus size: 775
1017335 CCAAAGCAAG
* * * * * * ** *
1017345 GGAACGTGTTTTTGGTTTCCAATCTCGAAAAGATTGTAGACTATTACAAGAATCCATGCTTATCT
1 GGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGTTTATCT
* *
1017410 CATTTAGGGGATGAAAC-TTGATTTTAAGGAAAA-GGGGCAAAGAAAA-ACTTTCCTTGCAAAAT
66 CATTTAAGGGATG-AACTTTGATTTTAAGGAAAATGGGGCAAA-AAAATACTTTCCTTG-AAAAG
* * *
1017472 CAATTCATTAATATCATGTATCCTAATGAAGAAAACAAGTTTACGGTGCCCAATTATGAAAAAAA
128 CAAATCATCAATATCATGTATCCTAATGAAGAAAACAAGTTTACGGTGCCCAATCATGAAAAAAA
* * **
1017537 TGAAGATCATTTACTAGAATCCATGTTCATCTCATTTAAAGCATGAACTTGACTTTATGAAAAAT
193 TGAAGATCATTTACTAGAATCCATGTTCATCTCATTTAAAGCACGAACTTGACTCTACAAAAAAT
* *
1017602 GGTGGGAATAAAAATGCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGAT
258 GGTGGGAAGAAAAATGCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTAATGAGAAGAT
* ** * *
1017667 GATGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATTGATGTTTGTCTTGTT
323 GATGTTTAAGGAGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTTAGTCTTATT
* * * * * * **
1017732 TAAGAGATGAACTTTGATTCTATGAAAAATGGTTGTAAAAAAAACTTTTCTTGCATAGCCAAATT
388 TAAAAGATGAACTTTGATTCTATGAAAAATAGTGGCAAAAAAAACTTTCCTTGCAGAGCCAAACC
* * * *
1017797 GTCAATGTCATGTATCTAAATGAGGATTTTAAG-GCCCAACCATGAAAAGAATGGAGACTATTAT
453 ATCAATGTCATGTATCCAAATAAGGATTTTAAGTGCCCAACCATGAAAAGAATGGAGACTATTAC
* * * * ** *
1017861 AGGAATCCATGTTTGCCTTACTTGAGGGATGAACTTTGA-TTATAAGGAAAATAAGTCAGAGAAA
518 AAGAATCCATGTTTACCTCACTTGAAGGACAAACTTTGACTT-TAAGGAAAATAAGTCAAAGAAA
* * * *
1017925 AGCTTTTCTTCCGAAGCCAAGGCATCAATATC-ATGTAGCCCAATAAGGGAACATGTTTATGGTG
582 AGCTTTTCTTCCAAAACCAAAGCATCAATATCGATG-AG--------GAGAACATGTTTATGGTG
* * * * * *
1017989 CCCAAT-AATTGAAAAAAGGAGATTGTTACAACTATCTC-AGTTTATC-TCATTTGAGGGACAAA
638 CCCAATCAA-GGAAAAAAGGAAATTGTTACAACAATC-CAAGCTTATCTTC-TTTAAGGAACAAA
* * *
1018051 CTTTGA-TTCAATCAAAAATGGT-GGAAAAGTTTTTCTTAAAACAAT-AAAGCATCAATTTCATG
700 CTTTGAGTT-AATCAAAAATAGTAAGAAAAGTTTTTCTTAAAAC-ATCAAAGCATCAATGTCATG
*
1018113 CATCCCATTGAAC
763 CATCCCAATGAAC
* ** * * *
1018126 GGAATGTGTTTTTGGTTCCTTATCTT-AGAAAGAATGGAGACTATTATGAGAATCCTTGTTTCTA
1 GGAATGTGCTTTTGGTTCCCAATCTTGA-AAAGAATGGAGACTATTATGAGAATCCATGTTTATC
* *
1018190 TCATTTAAGGGATGAACTTTGATTTTAAGGAAAATGGGGCAAAAAAATACTTTTCTTGTGAAAGC
65 TCATTTAAGGGATGAACTTTGATTTTAAGGAAAATGGGGCAAAAAAATACTTTCCTTG-AAAAGC
* * *** *
1018255 AAATCATCAATATCATGTATCCTAAT-AAGGATATGCGTTTATGGTGCCCAATCATG-AAAAAAT
129 AAATCATCAATATCATGTATCCTAATGAAGAAAACAAGTTTACGGTGCCCAATCATGAAAAAAAT
* * * * *
1018318 GAAGATCA-TTATTA-AATCCATGCTT-GTCTCATTTGAGGGACGAACTTAGACTCTACAAAAAA
194 GAAGATCATTTACTAGAATCCATG-TTCATCTCATTTAAAGCACGAACTT-GACTCTACAAAAAA
* * * *
1018380 TGGTGGGAAGAAAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCCTGTTTCCTAGTGATG-G
257 TGGTGGGAAGAAAAATG-CTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTAATGA-GAA
* * * *
1018443 GAATG-TGTTTATGGAGCCTAATCTTTAAAAGAATGGGGATTATTATGAGAATCCTTGTTAGT-T
320 G-ATGATGTTTAAGGAGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTTAGTCT
* * * *
1018506 TCATTTAAAAGATGAAGTTTGATTCTATGAAAAATAGTGGCAAAGAAAGCTTTCCTTGCGGAGCC
384 T-ATTTAAAAGATGAACTTTGATTCTATGAAAAATAGTGGCAAAAAAAACTTTCCTTGCAGAGCC
* ** **
1018571 AAACCATCAATGTCATGTATCCCAATAAGGATTTTTGGTGCCCAATTATGAAAAGAATGGAGACT
448 AAACCATCAATGTCATGTATCCAAATAAGGATTTTAAGTGCCCAACCATGAAAAGAATGGAGACT
* * * *
1018636 ATTACAAGAATCCATGTTTATCTCATTTGAAGGACAAACTTTGACTTTTAGGAAAATAGGTCAAA
513 ATTACAAGAATCCATGTTTACCTCACTTGAAGGACAAACTTTGACTTTAAGGAAAATAAGTCAAA
*
1018701 GAAAAGCTTTTCTTGCAAAACCAAAGCATCAATATCGATGAGGAGAACATGTTTATGGTGCCCAA
578 GAAAAGCTTTTCTTCCAAAACCAAAGCATCAATATCGATGAGGAGAACATGTTTATGGTGCCCAA
* * ** *
1018766 TCAAGGTAAAATGGAAATTGTTATGACAATCCAAGCTTGTCTTCTTTAAGGAACAAACTTTGAGT
643 TCAAGGAAAAAAGGAAATTGTTACAACAATCCAAGCTTATCTTCTTTAAGGAACAAACTTTGAGT
* *** *
1018831 TTATCAAAAATAGTAAAAAGAAAAGTTTTTCTTGCGACATCAAAGCATCAATGTCATGTATCCCA
708 TAATCAAAAATAGT---AAGAAAAGTTTTTCTTAAAACATCAAAGCATCAATGTCATGCATCCCA
*
1018896 ATGAAG
770 ATGAAC
* * * *
1018902 GGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGTGATTATTATGAGAATCCATATTTGTCT
1 GGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGTTTATCT
** * * * *
1018967 CATTTAAGTAATGAACTTTGATTTCAAGGAAAATGGGGCAAAGAAATGCTTTCCTTGCAAAGCCA
66 CATTTAAGGGATGAACTTTGATTTTAAGGAAAATGGGGCAAAAAAATACTTTCCTTGAAAAG-CA
* *
1019032 AAGCATCAATATAATGTATCCTAATGA
130 AATCATCAATATCATGTATCCTAATGA
1019059 TGAGAATCCA
Statistics
Matches: 781, Mismatches: 127, Indels: 54
0.81 0.13 0.06
Matches are distributed among these distances:
771 1 0.00
772 77 0.10
773 6 0.01
775 6 0.01
776 172 0.22
777 2 0.00
778 28 0.04
779 203 0.26
780 131 0.17
781 110 0.14
782 45 0.06
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (775 bp):
GGAATGTGCTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGTTTATCT
CATTTAAGGGATGAACTTTGATTTTAAGGAAAATGGGGCAAAAAAATACTTTCCTTGAAAAGCAA
ATCATCAATATCATGTATCCTAATGAAGAAAACAAGTTTACGGTGCCCAATCATGAAAAAAATGA
AGATCATTTACTAGAATCCATGTTCATCTCATTTAAAGCACGAACTTGACTCTACAAAAAATGGT
GGGAAGAAAAATGCTTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTAATGAGAAGATGAT
GTTTAAGGAGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTTAGTCTTATTTAA
AAGATGAACTTTGATTCTATGAAAAATAGTGGCAAAAAAAACTTTCCTTGCAGAGCCAAACCATC
AATGTCATGTATCCAAATAAGGATTTTAAGTGCCCAACCATGAAAAGAATGGAGACTATTACAAG
AATCCATGTTTACCTCACTTGAAGGACAAACTTTGACTTTAAGGAAAATAAGTCAAAGAAAAGCT
TTTCTTCCAAAACCAAAGCATCAATATCGATGAGGAGAACATGTTTATGGTGCCCAATCAAGGAA
AAAAGGAAATTGTTACAACAATCCAAGCTTATCTTCTTTAAGGAACAAACTTTGAGTTAATCAAA
AATAGTAAGAAAAGTTTTTCTTAAAACATCAAAGCATCAATGTCATGCATCCCAATGAAC
Found at i:1019145 original size:111 final size:110
Alignment explanation
Indices: 1018947--1019166 Score: 273
Period size: 111 Copynumber: 2.0 Consensus size: 110
1018937 GGTGATTATT
* ** * *
1018947 ATGAGAATCCATATTTGTCTCATTTAAGTAATGAACTTTGATTTCAAGGAAAATGGGGCAAAGAA
1 ATGAGAATCCATATTTGTCTCATTTAAGGAACAAACTTAGATTCCAAGGAAAATGGGG-AAAGAA
* **
1019012 ATGCTTTCCTTGCAAAGCCAAAGCATCAATATAATGTATCCTAATG
65 AAGCTTTCCTTGCAAAAACAAAGCATCAATATAATGTATCCTAATG
* * *
1019058 ATGAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTCCTA-GAAAATGATGGG-AAG
1 ATGAGAATCCATATTTGTCTCATTTAAGGAACAAACTTAGA-TTCCAAGGAAAATG--GGGAAAG
* *
1019121 AAAAGCTTTTCTTGCAAAAACAAAGCATCAATATCATGTATCCTAA
63 AAAAGCTTTCCTTGCAAAAACAAAGCATCAATATAATGTATCCTAA
1019167 CGAGAAGAAT
Statistics
Matches: 93, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
111 86 0.92
112 4 0.04
113 3 0.03
ACGTcount: A:0.38, C:0.16, G:0.16, T:0.30
Consensus pattern (110 bp):
ATGAGAATCCATATTTGTCTCATTTAAGGAACAAACTTAGATTCCAAGGAAAATGGGGAAAGAAA
AGCTTTCCTTGCAAAAACAAAGCATCAATATAATGTATCCTAATG
Found at i:1020103 original size:163 final size:159
Alignment explanation
Indices: 1019847--1020197 Score: 408
Period size: 163 Copynumber: 2.2 Consensus size: 159
1019837 CATGAACTCC
** *
1019847 ATGAAAAATGGT-GAAAGAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCATGTATCCTAAT
1 ATGAAAAATGGTGGAAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCAAAT
* * *
1019911 AAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAGGAAT-GAGGATTATTACTAGATAGAATCCC
66 AAGAAGAATGTGTTTAAGGTGCCTAATCTTGAAAAGAATAG-GGATTATTA-T-G--AGAATCCA
*
1019975 TGTTCGTCTCATTTGAG-GCACGAACTTAGACTT-T
126 TGTTCGTCTCATTTAAGAG-ACGAACTTAGA-TTCT
* * * * **
1020009 ATGGAAAATGGTGGGAAGAAAAGCCTTTCTTGCAAAACCAATGCATCATTATTGTGTATCCAAAT
1 ATGAAAAATGGTGGAAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCAAAT
* *
1020074 GAGAAG-ATGATGTTTAAGGTGCTTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTT
66 AAGAAGAATG-TGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTT
* *
1020138 TGTCTCATTTAAGAGATGAACTTAGATTCT
130 CGTCTCATTTAAGAGACGAACTTAGATTCT
* * *
1020168 ATGAAAAATGGCGGTAA-AAAAGCTTTTCTT
1 ATGAAAAATGGTGGAAAGAAAAGCCTTTCTT
1020198 ATAAAGCTGA
Statistics
Matches: 163, Mismatches: 21, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
158 14 0.09
159 47 0.29
160 1 0.01
161 1 0.01
162 15 0.09
163 84 0.52
164 1 0.01
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (159 bp):
ATGAAAAATGGTGGAAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCAAAT
AAGAAGAATGTGTTTAAGGTGCCTAATCTTGAAAAGAATAGGGATTATTATGAGAATCCATGTTC
GTCTCATTTAAGAGACGAACTTAGATTCT
Found at i:1020739 original size:155 final size:149
Alignment explanation
Indices: 1020573--1020923 Score: 354
Period size: 156 Copynumber: 2.3 Consensus size: 149
1020563 AATAGAGACA
* *
1020573 ATTACGAGAATCCATGTTTGTCTCATTTAAGGATGAACTTTGATTTTAAGGAAAATGG-GCAAAG
1 ATTACTAGAATCCATGTTTGTCTCATTTAAGGATGAACTTTGATTTTAAGAAAAATGGTGCAAA-
1020637 AAAAGCTTTCCTTACAAAAGC-AAACCATCAATATCATGTATCCTAATGAGGAAACATGTTTATG
65 AAAAGCTTTCCTTACAAAA-CTAAACCATCAATATCATGTATCCTAAT--GG-----TGTTTATG
** *
1020701 GTGCC-AATCATGAAACTAATGAATATC
122 GTGCCTAATCATGAAAAGAATGAAAATC
* * * * **
1020728 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-TTTAGACTTTATGAAAAATGGTGGGA
1 ATTACTAGAATCCATGTTTGTCTCATTTAAGG-ATGAACTTT-GATTTTAAGAAAAATGGTGCAA
* ** * * *
1020792 AAAAAGCTTTTCTTATGAAACTAAAGCATTAATATCATGTATCCTAATTGTGTTTATGGTGCCTA
64 AAAAAGCTTTCCTTACAAAACTAAACCATCAATATCATGTATCCTAATGGTGTTTATGGTGCCTA
* *
1020857 ATCTTGAAAAGAATGAAAATT
129 ATCATGAAAAGAATGAAAATC
*
1020878 ATTA-TAAGAATCCATATTTGTCTCATTTAA-GAGTCGAACTTTGATT
1 ATTACT-AGAATCCATGTTTGTCTCATTTAAGGA-T-GAACTTTGATT
1020924 CTATAAAAAT
Statistics
Matches: 164, Mismatches: 23, Indels: 23
0.78 0.11 0.11
Matches are distributed among these distances:
148 1 0.01
149 15 0.09
150 49 0.30
151 3 0.02
154 1 0.01
155 34 0.21
156 58 0.35
157 3 0.02
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.34
Consensus pattern (149 bp):
ATTACTAGAATCCATGTTTGTCTCATTTAAGGATGAACTTTGATTTTAAGAAAAATGGTGCAAAA
AAAGCTTTCCTTACAAAACTAAACCATCAATATCATGTATCCTAATGGTGTTTATGGTGCCTAAT
CATGAAAAGAATGAAAATC
Found at i:1025955 original size:18 final size:18
Alignment explanation
Indices: 1025932--1025996 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
1025922 ATCTTCTTCT
1025932 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
1025950 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
1025971 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
1025992 CTCCT
1 CTCCT
1025997 ATCTCTACTA
Statistics
Matches: 37, Mismatches: 2, Indels: 16
0.67 0.04 0.29
Matches are distributed among these distances:
17 3 0.08
18 12 0.32
19 2 0.05
20 2 0.05
21 4 0.11
22 2 0.05
23 2 0.05
24 7 0.19
25 3 0.08
ACGTcount: A:0.09, C:0.49, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:1025987 original size:42 final size:42
Alignment explanation
Indices: 1025935--1026053 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1025925 TTCTTCTCTC
*
1025935 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1025977 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
1026019 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1026054 TTGAGGGCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:1034818 original size:28 final size:28
Alignment explanation
Indices: 1034740--1034819 Score: 76
Period size: 28 Copynumber: 2.9 Consensus size: 28
1034730 TCCACATTCT
* *
1034740 AAGAAAGATC-AAGGAAGTGAAATCAAC
1 AAGAAATATCAAAGGAAGAGAAATCAAC
* * *
1034767 AAGAAATATGAAGGGAA-ACAAAAT-AAGC
1 AAGAAATATCAAAGGAAGA-GAAATCAA-C
1034795 AAGAAATATCAAAGGAAGAGAAATC
1 AAGAAATATCAAAGGAAGAGAAATC
1034820 GATGAAGAGG
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
27 10 0.25
28 29 0.73
29 1 0.03
ACGTcount: A:0.59, C:0.09, G:0.21, T:0.11
Consensus pattern (28 bp):
AAGAAATATCAAAGGAAGAGAAATCAAC
Found at i:1035620 original size:2 final size:2
Alignment explanation
Indices: 1035613--1035642 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1035603 AGGCCTATGA
1035613 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1035643 GCAAATTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:1046867 original size:9 final size:9
Alignment explanation
Indices: 1046855--1046915 Score: 50
Period size: 9 Copynumber: 6.1 Consensus size: 9
1046845 ATCTCTCTAT
1046855 TATCTCTCC
1 TATCTCTCC
1046864 TATCTCTTCTCC
1 TA--TC-TCTCC
1046876 TATCATCCCTCC
1 TATC-T--CTCC
*
1046888 TATCTCTAC
1 TATCTCTCC
1046897 TATCTCTCC
1 TATCTCTCC
*
1046906 TATCTTTCC
1 TATCTCTCC
1046915 T
1 T
1046916 CCTATCATCC
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
9 22 0.51
10 3 0.07
11 3 0.07
12 15 0.35
ACGTcount: A:0.13, C:0.41, G:0.00, T:0.46
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1046882 original size:42 final size:42
Alignment explanation
Indices: 1046828--1046945 Score: 157
Period size: 42 Copynumber: 2.8 Consensus size: 42
1046818 TCTTCTCTCC
* * *
1046828 TCCTCCTGTCATCCCTCATCTCTCTATTATCTCTCCTATCTCT
1 TCCTCCTATCATCCCTCATATCTCTACTATCTCTCCTATCT-T
*
1046871 T-CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTT
1 TCCTCCTATCATCCCTCATATCTCTACTATCTCTCCTATCTT
* * *
1046912 TCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 TCCTCCTATCATCCCTCATATCTCTACTATCTCT
1046946 TTGAGAGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
41 2 0.03
42 65 0.96
43 1 0.01
ACGTcount: A:0.12, C:0.42, G:0.01, T:0.45
Consensus pattern (42 bp):
TCCTCCTATCATCCCTCATATCTCTACTATCTCTCCTATCTT
Found at i:1050376 original size:12 final size:11
Alignment explanation
Indices: 1050354--1050429 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1050344 AGAGAAAGAA
*
1050354 GAGAGAGGAGG
1 GAGATAGGAGG
1050365 GATGATAGGAGG
1 GA-GATAGGAGG
*
1050377 AGAGACAGGA--
1 -GAGATAGGAGG
*
1050387 GAGATAGTA--
1 GAGATAGGAGG
1050396 GAGATAGGAGG
1 GAGATAGGAGG
1050407 GATGATAGGAGG
1 GA-GATAGGAGG
*
1050419 AGAGACAGGAG
1 -GAGATAGGAG
1050430 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1050386 original size:24 final size:24
Alignment explanation
Indices: 1050353--1050438 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1050343 AAGAGAAAGA
*
1050353 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1050377 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1050395 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1050419 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1050439 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1050405 original size:42 final size:42
Alignment explanation
Indices: 1050344--1050462 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1050334 TAGCCCTCAA
* *
1050344 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1050386 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1050428 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1050463 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1058635 original size:22 final size:23
Alignment explanation
Indices: 1058583--1058649 Score: 73
Period size: 22 Copynumber: 2.9 Consensus size: 23
1058573 CATGCCTTAT
*
1058583 TTTTTTTGCCAACTCTTTTTTTAAA
1 TTTTTTTGTCAAC-C-TTTTTTAAA
*
1058608 TCTTTTTGTCAACCTTTTTT-AA
1 TTTTTTTGTCAACCTTTTTTAAA
* *
1058630 TTTTTTTGTTAACTTTTTTT
1 TTTTTTTGTCAACCTTTTTT
1058650 TGCTAACTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 19 0.51
23 6 0.16
24 1 0.03
25 11 0.30
ACGTcount: A:0.16, C:0.13, G:0.04, T:0.66
Consensus pattern (23 bp):
TTTTTTTGTCAACCTTTTTTAAA
Found at i:1058641 original size:12 final size:13
Alignment explanation
Indices: 1058622--1058663 Score: 52
Period size: 14 Copynumber: 3.3 Consensus size: 13
1058612 TTTGTCAACC
1058622 TTTT-TTAA-TTT
1 TTTTGTTAACTTT
1058633 TTTTGTTAACTTTT
1 TTTTGTTAAC-TTT
*
1058647 TTTTGCTAACTTT
1 TTTTGTTAACTTT
1058660 TTTT
1 TTTT
1058664 CTGAAAAGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 4 0.15
12 4 0.15
13 7 0.26
14 12 0.44
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (13 bp):
TTTTGTTAACTTT
Found at i:1058649 original size:14 final size:14
Alignment explanation
Indices: 1058630--1058663 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
1058620 CCTTTTTTAA
*
1058630 TTTTTTTGTTAACT
1 TTTTTTTGCTAACT
1058644 TTTTTTTGCTAACT
1 TTTTTTTGCTAACT
1058658 TTTTTT
1 TTTTTT
1058664 CTGAAAAGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.12, C:0.09, G:0.06, T:0.74
Consensus pattern (14 bp):
TTTTTTTGCTAACT
Found at i:1062735 original size:18 final size:18
Alignment explanation
Indices: 1062714--1062751 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
1062704 TAGCCTTCAA
1062714 AGAGAAAGTAGAGATAGG
1 AGAGAAAGTAGAGATAGG
* *
1062732 AGAGATAGTAGATATAGG
1 AGAGAAAGTAGAGATAGG
1062750 AG
1 AG
1062752 GATGATAGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.37, T:0.16
Consensus pattern (18 bp):
AGAGAAAGTAGAGATAGG
Found at i:1065236 original size:178 final size:178
Alignment explanation
Indices: 1064935--1065265 Score: 452
Period size: 178 Copynumber: 1.9 Consensus size: 178
1064925 ACCATCGATG
* *
1064935 TCATGTATCTAAATGAGAATTTTTTGGTGCCCAACCATGAATAGAATGGAAACTATTAAAGAATC
1 TCATGTATCTAAATGAGAA-TTTTTGGGGCCCAACCATGAAAAGAATGGAAACTATTAAAGAATC
** * * ***
1065000 CATGTTTTTCTTATTTAACGGATGAACTTTGATTTTGAGGAAAATTGGTTAAAGAAAAGCTTTTC
65 CATGTTTGCCTTACTTAACGGATGAACTTTGATTATGAGGAAAACAAGTTAAAGAAAAGCTTTTC
* *
1065065 TTATGAAGCCAAAGCATCGATATCATGTATCCTACTTAGGAGAACGCGT
130 TTACGAAGCCAAAGCATCAATATCATGTATCCTACTTAGGAGAACGCGT
* *
1065114 TCATGTATCTAAATGAGGA-TTTTGGGGCCCAACCATGAAAAGAAT-GAAGACTATTATAGGAAT
1 TCATGTATCTAAATGAGAATTTTTGGGGCCCAACCATGAAAAGAATGGAA-ACTATTA-AAGAAT
* * *
1065177 CCATGTTTGCCTTACTTGA-GAGATGAACTTTGATTATGAGGGAAACAAGTTAGAGAAAAGCTTT
64 CCATGTTTGCCTTACTTAACG-GATGAACTTTGATTATGAGGAAAACAAGTTAAAGAAAAGCTTT
*
1065241 TCTTGCGAAGCCAAAGCATCAATAT
128 TCTTACGAAGCCAAAGCATCAATAT
1065266 GATGACAATC
Statistics
Matches: 132, Mismatches: 17, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
176 3 0.02
177 32 0.24
178 79 0.60
179 18 0.14
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (178 bp):
TCATGTATCTAAATGAGAATTTTTGGGGCCCAACCATGAAAAGAATGGAAACTATTAAAGAATCC
ATGTTTGCCTTACTTAACGGATGAACTTTGATTATGAGGAAAACAAGTTAAAGAAAAGCTTTTCT
TACGAAGCCAAAGCATCAATATCATGTATCCTACTTAGGAGAACGCGT
Found at i:1070207 original size:18 final size:19
Alignment explanation
Indices: 1070186--1070298 Score: 63
Period size: 21 Copynumber: 5.5 Consensus size: 19
1070176 ATCTTCTTCT
1070186 CTCCTTCTC-CTATCATCC
1 CTCCTTCTCTCTATCATCC
* *
1070204 CTCC-TCTCTCTATTATCT
1 CTCCTTCTCTCTATCATCC
1070222 CTCCTATCTCTCCTCCTATCATCC
1 CTCC--T-TCT-CT-CTATCATCC
1070246 CTCCTATCTCTCCTATC-TCTC
1 CTCCT-TCTCT-CTATCATC-C
*
1070267 CT-ATCTCTCATCCTATCATCC
1 CTCCT-TCTC-T-CTATCATCC
1070288 CTCCTATCTCT
1 CTCCT-TCTCT
1070299 TCTTTCTCTT
Statistics
Matches: 75, Mismatches: 9, Indels: 19
0.73 0.09 0.18
Matches are distributed among these distances:
17 4 0.05
18 15 0.20
20 7 0.09
21 22 0.29
22 14 0.19
23 2 0.03
24 11 0.15
ACGTcount: A:0.12, C:0.46, G:0.00, T:0.42
Consensus pattern (19 bp):
CTCCTTCTCTCTATCATCC
Found at i:1070229 original size:9 final size:9
Alignment explanation
Indices: 1070217--1070275 Score: 70
Period size: 9 Copynumber: 6.9 Consensus size: 9
1070207 CTCTCTCTAT
1070217 TATCTCTCC
1 TATCTCTCC
1070226 TATCTCTCC
1 TATCTCTCC
* *
1070235 T-CCTAT-C
1 TATCTCTCC
*
1070242 -ATCCCTCC
1 TATCTCTCC
1070250 TATCTCTCC
1 TATCTCTCC
1070259 TATCTCTCC
1 TATCTCTCC
1070268 TATCTCTC
1 TATCTCTC
1070276 ATCCTATCAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.12, C:0.46, G:0.00, T:0.42
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1070245 original size:42 final size:42
Alignment explanation
Indices: 1070192--1070307 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
1070182 TTCTCTCCTT
* *
1070192 CTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTC
*
1070234 CTCCTATCATCCCTCCTATCTCTCCTATCTCTCCTATCTCTC
1 CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTC
* * *
1070276 ATCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTATCATCCCTCCTATCTCTACTATCTCT
1070308 TTGAGGGCTA
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.12, C:0.45, G:0.00, T:0.43
Consensus pattern (42 bp):
CTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCTCTC
Found at i:1073965 original size:781 final size:768
Alignment explanation
Indices: 1072151--1074043 Score: 1831
Period size: 781 Copynumber: 2.4 Consensus size: 768
1072141 CGAGAATCTT
* *
1072151 TGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGCTTTTCTT
1 TGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGCTTTCCTT
* * * ***
1072216 GTGAA-AGCAAATCATCAATATCATGTATCCTAATGAGGATAATTTCTTTATGGT-GCCTAATCA
66 GTGAAGA-CAAAGCATCAATATCTTGTATCCTAATGAGGAGAATAAGTTTATGGTGGCC-AATCA
** * * ** * *
1072279 TGAAAA-AATGAAGATCATTATTA-AATCCATGTTTGTCTCATTTGAGGGACAAATTTTGACTCT
129 CAAAAAGAATGAA-ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCT
* * * *
1072342 ACAAAAAATGGTGGGAAGAAAAAGCCTTTCTTGCAAAACCAAATCATCA-ATATCCTATATCCTA
193 AC-AAAAATAGTGGGAAG-AAAAGCCTTTCTTGCAAAACCAAAGCATCATGTATCCTA-AT--AA
* * * * *
1072406 GTTATGAGAATGTATTTGTGGTACCTAATCTTTAGAAGAATGGGGATTATTATGAGAATCCATCT
253 G--A--AGAATGTATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATTATGAGAATCCATGT
* * ** * *
1072471 TAGT-TTACTTTAAAAGATGAACTTTGATTCTATGAAAAATAATGGCAAAGAAAGCTTTCCTTGC
314 TAGTCTCA-TTTAAAAGATGAACTTTAATTCTATGAAAAATAATGAAAAAAAAAGCTTTCCTTAC
**
1072535 AAAGGCAAACCATCAATGTCATATAATATCCTAATAAGGATTTTTGGTGCCCAATTACAAAAAGA
378 AAAGGCAAACCATCAATGTCA-ATAATATCCTAATAAGGATTTTTGGTGCCCAACCACAAAAAGA
*
1072600 ATAGGGACTATTACAAGAATCCATGTTTATCTCATTTGAGGGATGAACTTTCACTTTTAGGAAAA
442 ATAGGGACTATTACAAGAATCCATGTTTATCTCATTTGAAGGA-GAACTTTCACTTTTAGGAAAA
* *
1072665 TAGGTCAAAGAAAAGCTTTTCTTGCAAATCCAAAGCATCAATATCGATGAGGAGAACGTGTTTAT
506 TAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAGAAGAACGTGTTTAT
* *
1072730 GGTGCTCGATCAAGGAAAAATGGAGATTGTTACAACAATCAAAGTTCATCTTTTAAGGGACAAAC
571 GCTGCCCGATCAA-GAAAAATGGAGATTGTTACAACAATCAAAGTTCATCTTTTAAGGGACAAAC
* * * *
1072795 TTTAAGTCTATTGAAAAAAGTAGAAAGAAAAGTTTTTCTTGCAACATCAAAGCATCAATGTCATG
635 TTTAAGTCAATAGAAAAAAGTAGAAAGAAAAGTTTTTCTTGCAACACCAAAGCATCAATATCATG
* * ** **** * * * *
1072860 TATCCCAATGAAGGGAATGTGCTTTTGGTTTCCAATCTTGAAAAGAATGGTGACTATTATGAGAA
700 TATCCAAATGAAGGGAACGTGCTTTTGGTTTCCAATCTAAAAAAGAATCAAAACCACTATAACAA
*
1072925 TTCA
765 TCCA
* ** * * * *
1072929 TGTTTGTCTTATTTAAGTAATGAACTTTAATTTCAAGGAAAATGGGGCAAAGAAATGCTTTCCTT
1 TGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGCTTTCCTT
** * * * ** *
1072994 GCAAAGCCAAAGCATCAATAT-TATGTATCCTCATGACGAGAATGGGTTTATGGTGCCCAATCAC
66 GTGAAGACAAAGCATCAATATCT-TGTATCCTAATGAGGAGAATAAGTTTATGGTGGCCAATCAC
* * * * *
1073058 AAAAAGAATGAAAATCAATACTAGAGTCCATGTTTGTCTCATTTGAGGCGTGAACTTAAACTTTT
130 AAAAAGAATG-AAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAC--TC
** * *
1073123 TGTAAAATTATA-TGGGAAGAAAAGCTTTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTA
192 TACAAAA--ATAGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATC---A---TGTATCCTA
* * **
1073187 ATGAGAAGAATGTTTTTATAATGCCTAATCTTGAAAAGAATGGGGATTATTATGAGAATCCATGT
249 ATAAGAAGAATGTATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATTATGAGAATCCATGT
* * * **
1073252 TTGTCCCATTTAAATGATGAACTTTAATTCTATGAAAAATGGTTGTAAAAAAAAAGCTTTTCC-T
314 TAGTCTCATTTAAAAGATGAACTTTAATTCTATGAAAAAT-AATG-AAAAAAAAAGC-TTTCCTT
* * ** *
1073316 ACAAA-GCTAAACCATCAATGTC-AT-GTAT-CTAAATGAGGATTTTTGGTGCCCAACCATGAAT
376 ACAAAGGC-AAACCATCAATGTCAATAATATCCT-AATAAGGATTTTTGGTGCCCAACCACAAAA
* *
1073377 AGAAT-GGAGACTATTA-AAGGAATCCATGTTTGTCTCATTT-AAGGA-AACTTTGA-TTTTAAG
439 AGAATAGG-GACTATTACAA-GAATCCATGTTTATCTCATTTGAAGGAGAACTTTCACTTTT-AG
* *
1073437 GAAAATGGGTCAAAGTAAAGCTTTTCTTG-AGAAGCCAAAGCATCAATATCATGTATCCCAATGA
501 GAAAATAGGTCAAAGAAAAGCTTTTCTTGCA-AAGCCAAAGCATCAATATC--G-------ATGA
** *** ** * **
1073501 GAAGATTGTGTTTATGCTGCCCGATCATA-AAAAGATGGAGATTGTTTTGACAATTTAATTTTGT
556 GAAGAACGTGTTTATGCTGCCCGATCA-AGAAAA-ATGGAGATTGTTACAACAATCAAAGTTCAT
* * * *** *
1073565 CTTATTTGAA-GGATAAACTTTGATTCAATAGAAAGTGGTGGAAAGAAAAGTTTTTCTTG-AGAC
619 C-T-TTT-AAGGGACAAACTTTAAGTCAATAGAAAAAAGTAGAAAGAAAAGTTTTTCTTGCA-AC
* ** * *
1073628 CCCAAAGCAAT-AATATCATGTATCCAAATGATTGGAACGTGTTTTTGG-TTCCTAATGTCAAAA
680 ACCAAAGC-ATCAATATCATGTATCCAAATGAAGGGAACGTGCTTTTGGTTTCC-AATCT-AAAA
1073691 AAGAATCAAAACCACTATAACAATCCA
742 AAGAATCAAAACCACTATAACAATCCA
* * * *
1073718 TGTTTGTCTCATTGAAGGGATGAACTTTGATTTTAAGGAAAAGTAGGGTAAAGAAAGGATTTCCT
1 TGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGCTTTCCT
* * * *
1073783 TATGAAGACAAAGCATTAATATCTTGGATCCTAATGAGGAGAACAAGTTTATGGTGGCCAATCAC
65 TGTGAAGACAAAGCATCAATATCTTGTATCCTAATGAGGAGAATAAGTTTATGGTGGCCAATCAC
* * *
1073848 AAAAAAGAATGAGAATCATTACTAGAATCCATGTTTATTTCATTTGAGCCATGAACTTAGACTCT
130 -AAAAAGAATGA-AATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCT
* *
1073913 ACAAAAATAGT-GGAAGAAAAGCCTTTCTTACGAAACCAAAGCATCATGTATCCTAATAAGAAGA
193 ACAAAAATAGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATGTATCCTAATAAGAAGA
* * * * * *
1073977 ATGTGTTTATGGTGCCTAATCTTGGAAAGAATGAGGATCATTACT-AGAATCCAAGTTCGTCTCA
258 ATGTATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATTA-TGAGAATCCATGTTAGTCTCA
1074041 TTT
322 TTT
1074044 GAGGCATGAA
Statistics
Matches: 902, Mismatches: 162, Indels: 99
0.78 0.14 0.09
Matches are distributed among these distances:
776 5 0.01
777 54 0.06
778 106 0.12
779 25 0.03
780 91 0.10
781 189 0.21
782 15 0.02
783 30 0.03
784 7 0.01
785 6 0.01
786 49 0.05
787 42 0.05
788 94 0.10
789 66 0.07
790 70 0.08
791 53 0.06
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (768 bp):
TGTTTGTCTCATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGCTTTCCTT
GTGAAGACAAAGCATCAATATCTTGTATCCTAATGAGGAGAATAAGTTTATGGTGGCCAATCACA
AAAAGAATGAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTCTACA
AAAATAGTGGGAAGAAAAGCCTTTCTTGCAAAACCAAAGCATCATGTATCCTAATAAGAAGAATG
TATTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATTATGAGAATCCATGTTAGTCTCATTTA
AAAGATGAACTTTAATTCTATGAAAAATAATGAAAAAAAAAGCTTTCCTTACAAAGGCAAACCAT
CAATGTCAATAATATCCTAATAAGGATTTTTGGTGCCCAACCACAAAAAGAATAGGGACTATTAC
AAGAATCCATGTTTATCTCATTTGAAGGAGAACTTTCACTTTTAGGAAAATAGGTCAAAGAAAAG
CTTTTCTTGCAAAGCCAAAGCATCAATATCGATGAGAAGAACGTGTTTATGCTGCCCGATCAAGA
AAAATGGAGATTGTTACAACAATCAAAGTTCATCTTTTAAGGGACAAACTTTAAGTCAATAGAAA
AAAGTAGAAAGAAAAGTTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCAAATGAAGGGA
ACGTGCTTTTGGTTTCCAATCTAAAAAAGAATCAAAACCACTATAACAATCCA
Found at i:1074185 original size:159 final size:153
Alignment explanation
Indices: 1073850--1074258 Score: 407
Period size: 159 Copynumber: 2.6 Consensus size: 153
1073840 CCAATCACAA
* * * ** * *
1073850 AAAAGAATGAGAATCATTACTAGAATCCATGTTTATTTCATTTGAGCCATGAACTTAGACTCTA-
1 AAAAGAAAGAGGATCATTACTAGAATCCAAGTTCGTCTCATTTGAGGCATGAACTTAGACTCTAT
* * *
1073914 CAAAAATAGT-GGAAGAAAAGCCTTTCTTACGAAACCAAAGCATCATGTATCCTAATAAGAAGAA
66 GAAAAATAGTGGGAAGAAAAGCCTTTCTTACAAAACCAAAGCATCATGTATCCAAATAAGAAGAA
* ** *
1073978 TGTGTTTATGGTGCCTAATCTTG
131 TGTGTTTAAGGCACCTAATCTTC
* *
1074001 GAAAGAATGAGGATCATTACTAGAATCCAAGTTCGTCTCATTTGAGGCATGAACTTAGACTCTAT
1 AAAAGAAAGAGGATCATTACTAGAATCCAAGTTCGTCTCATTTGAGGCATGAACTTAGACTCTAT
* * * * * *
1074066 GGAAAATGGTGGGAAGAAAAGCCTTTCTTGCAAAACCAATGCATTGTTATTGTGTATCCAAATGA
66 GAAAAATAGTGGGAAGAAAAGCCTTTCTTACAAAACCAAAGCA---TCA---TGTATCCAAATAA
1074131 GAAG-ATGATGTTTAAGGCACCTAATCTTC
125 GAAGAATG-TGTTTAAGGCACCTAATCTTC
* * * * * *
1074160 AAAAGAACAG-GGATTATTA-TGAGAATCTATGTTTGTCTCATTTAAGAG-ATGAACTTAGATTC
1 AAAAGAA-AGAGGATCATTACT-AGAATCCAAGTTCGTCTCATTTGAG-GCATGAACTTAGACTC
* * *
1074222 TATGAAAAATAGTGGTAAAAAAAGCTTTTCTTACAAA
63 TATGAAAAATAGTGGGAAGAAAAGCCTTTCTTACAAA
1074259 GCTAAACCAT
Statistics
Matches: 212, Mismatches: 34, Indels: 16
0.81 0.13 0.06
Matches are distributed among these distances:
151 57 0.27
152 7 0.03
153 29 0.14
156 2 0.01
158 4 0.02
159 111 0.52
160 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (153 bp):
AAAAGAAAGAGGATCATTACTAGAATCCAAGTTCGTCTCATTTGAGGCATGAACTTAGACTCTAT
GAAAAATAGTGGGAAGAAAAGCCTTTCTTACAAAACCAAAGCATCATGTATCCAAATAAGAAGAA
TGTGTTTAAGGCACCTAATCTTC
Found at i:1074887 original size:154 final size:153
Alignment explanation
Indices: 1074554--1075748 Score: 407
Period size: 154 Copynumber: 7.6 Consensus size: 153
1074544 CCTGAAACAA
* * * * *
1074554 CAAAGACAACAATGTCATTGTATCCTAATGAAGGAAACGAGTTTTTGGTTCCCAATCTTGAAAAG
1 CAAAG-CATCAATATCA-TGTATCCTAATG-AGGAAACGTGTTTATGG-TGCCAATCTTGAAAAG
* * * * ** *
1074619 AATGGAGACAATTACGAGAATCCATATTTTTCTCATTTAAGGGATGAACTTTTATTTTAAGGAAA
62 AAT-G-GAC-ATTACTAGAATCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTAAGGAAA
* *
1074684 ATGGGTAAAGAAAAGCTTTCCTTGCGAAAG
124 ATGGGGAAAGAAAACCTTTCCTTGCGAAAG
* * * **
1074714 CAAATCATCAATATCATGTATCCTATTGAGGAAACGTGTTTATGGTGCCAATCATGAAACTAATG
1 CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCCAATCTTGAAAAGAATG
*
1074779 GATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTATA-GAAAATGGT
66 GA-CATTACTAGAATCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTA-AGGAAAAT-G-
*
1074843 GGGAAA-AAAACCTTT-CTTGTGAAA-
127 GGGAAAGAAAACCTTTCCTTGCGAAAG
* * *
1074867 CTAAAGCATTAATATCATGTATCCTAATGA-GAAGATTGTGTTTATGGTGCCTAAACTTGAAAAG
1 C-AAAGCATCAATATCATGTATCCTAATGAGGAA-A-CGTGTTTATGGTGCC-AATCTTGAAAAG
* * * * *
1074931 AATGGAGATTATGATGAGAATCCATATTTGTCTCATTTAAGAGTCA--AACTTTGA-TTCTATGA
62 AATGGACATTA--CT-AGAATCCATATTTGTCTCATTTAAG-G-CACGAACTTAGACTT-TAAGG
* * * *
1074993 AAAATGGTGGTAAAAAAAAGCTTTTCTTAC-AAAG
121 AAAATGG-GG-AAAGAAAACCTTTCCTTGCGAAAG
* * * * * * * * *
1075027 CTGAACCATCAATGTCATATAT-CTGAATGAGG--A--T-TTT-TGACTGTCGAACCATGAATAG
1 C-AAAGCATCAATATCATGTATCCT-AATGAGGAAACGTGTTTATG-GTG-CCAATCTTGAAAAG
* * * * *
1075085 AATGGAGACTATTACAAGAATCCATATTTGTCTCATTTGAGGGACGAACTTTGA-TTTTAGAGAA
62 AAT-G-GAC-ATTACTAGAATCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTAAG-GAA
** * * *
1075149 AATAGGCCAAAGAAAAGCTTTTCTTACG-AAG
123 AAT-GGGGAAAGAAAACCTTTCCTTGCGAAAG
* ** * * ** * **
1075180 TCAAAGCATCAATATCGTGTATCAGAATAAGAAGAACAAGTTTATGGTGCCCAAACTCAAAAAG-
1 -CAAAGCATCAATATCATGTATCCTAATGAGGA-AACGTGTTTATGGTG-CCAATCTTGAAAAGA
* * * * ** * ***
1075244 ATGGAGATTGTTACGACAATCTAGGTTTGTCTCATTTGAAGGTCA--AACTCTA-ATTTTATCAA
63 ATGGACA---TTACTAGAATCCATATTTGTCTCATTT-AAGG-CACGAACT-TAGACTTTAAGGA
** ** * * * * *
1075306 AAATGGTGGACAA-ACGAGTTTTTCTGGAGACAC
122 AAATGG-GGA-AAGAAAACCTTTCCTTGCGAAAG
* * * * * * * *** *
1075339 CAAAGTATCAATGTCTTGTATCCCAATGAAGGGAACGTATTTTTGGTTTTAATCTAGAAAAGAAT
1 CAAAGCATCAATATCATGTATCCTAATG-AGGAAACGTGTTTATGGTGCCAATCTTGAAAAGAAT
* * * * * **
1075404 GGAGTCTATTA-T-GAAATCCTTGTTTATCTCATTCAAGGGATTAACATT-GA-TTTCAAGGAAA
65 GGA--C-ATTACTAG-AATCCATATTTGTCTCATTTAAGGCACGAAC-TTAGACTTT-AAGGAAA
* * * *
1075465 ATGGGGCAA-AAAAGCTTTCCGT-CAAAAG
124 ATGGGGAAAGAAAACCTTTCCTTGCGAAAG
* ** * * *
1075493 CAAACCATCAATATTGTGTATCCTAACGA-G-AACATGTATATGGTGCCTAAT-TGTGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCC-AATCT-TGAAAAGAA
* * * * * * * * *
1075555 TAAAGATCGTTACTAAAATCTATATTTGTCTCATTTGAGGCATGAACTTCA-AATCTATGGAAAA
64 T--GGA-CATTACTAGAATCCATATTTGTCTCATTTAAGGCACGAACTT-AGACTTTAAGGAAAA
** *
1075619 TAATGGAAAGAAAAGCCTTT-CTTGCGAAAC
125 T-GGGGAAAGAAAA-CCTTTCCTTGCGAAAG
* *
1075649 CAAAG---CAATATCATGTATCCTAATGAGAAGAAGGTGTTT-TGGTGCCAAATCTTGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAGGA-AACGTGTTTATGGTGCC-AATCTTGAAAAGAA
* * *
1075710 TAGG-CATTATTGTGAAAATCCATGTTTGTCTCATTTAAG
64 T-GGACATTA--CT-AGAATCCATATTTGTCTCATTTAAG
1075749 AGATGAACTT
Statistics
Matches: 762, Mismatches: 191, Indels: 169
0.68 0.17 0.15
Matches are distributed among these distances:
151 11 0.01
152 23 0.03
153 104 0.14
154 174 0.23
155 94 0.12
156 68 0.09
157 65 0.09
158 139 0.18
159 48 0.06
160 34 0.04
161 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (153 bp):
CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCCAATCTTGAAAAGAATG
GACATTACTAGAATCCATATTTGTCTCATTTAAGGCACGAACTTAGACTTTAAGGAAAATGGGGA
AAGAAAACCTTTCCTTGCGAAAG
Found at i:1074953 original size:925 final size:933
Alignment explanation
Indices: 1073032--1075025 Score: 2095
Period size: 925 Copynumber: 2.1 Consensus size: 933
1073022 CCTCATGACG
* * * *** ** * *
1073032 AGAATGGGTTTATGGTGCCCAATCACAAAAAGAATGAAAATCAAT-ACTAGAGTCCATGTTTGTC
1 AGAATGTGTTTATGGTGCCTAAACTTGAAAAGAATGAGGATC-ATGACTAGAATCCAAGTTTGTC
* * * * *
1073096 TCATTTGAGGCGTGAACTTAAACTTTTTGTAAAATTAT-ATGGGAAGAAAAGCTTTTCTTGCAAA
65 TCATTTGAGGCATGAACTTAGACTCTATG-AAAA--ATGGTGGGAAGAAAAGCTTTTCTTGCAAA
* * * * *
1073160 AACAAAGCATCAATATCGTGTATCCTAATGAGAAGAATGTTTTTATAATGCCTAATCTTGAAAAG
127 AACAAAGCATCAATATCGTGTATCCAAATGAGAAGAATGATGTTATAAGGCCTAATCTTCAAAAG
**
1073225 AATGGGGATTATTATGAGAATCCATGTTTGTCCCATTTAAATGATGAACTTTAATTCTATGAAAA
192 AACAGGGATTATTATGAGAATCCATGTTTGTCCCATTTAAATGATGAACTTTAATTCTATGAAAA
* * * *
1073290 ATGGTTGTAAAAAAAAAGCTTTTCCTACAAAGCTAAACCATCAATGTCATGTATCTAAATGAGGA
257 ATAGTGGT-AAAAAAAAGCTTTTCCTACAAAGCTAAACCATCAAGGTCATGTATCCAAATGAGGA
* *
1073355 TTTTTGGTGCCCAACCATGAATAGAATGGAGACTATTAAAGGAATCCATGTTTGTCTCATTTAAG
321 TTTTTGGTACCCAACCATGAAAAGAATGGAG---ATTAAAGGAATCCATGTTTGTCTCATTTAAG
* * * * * *
1073420 GAAACTTTGATTTTAAGGAAAATGGGTCAAAGTAAAGCTTTTCTTGAGAAGCCAAAGCATCAATA
383 GAAACGTTAATTTTAAGAAAAATAGGTCAAAGAAAAGCTTTTCTAGAGAAGCCAAAG-AT-AATA
* ** * **
1073485 TCATGTATCCCAATGAGAAGATTGTGTTTATGCTGCCCGATCATAAAAAGATGGAGATTGTTTTG
446 TCATATAT-CCAATGAGAAGAACGTGTTTATGCTGCCCAATCATAAAAAGATGGAGATTGTTGCG
* * * * * * *
1073550 ACAATTTAATTTTGTCTTATTTGAAGGATAAACTTTGATTCAATAGAAAGTGGTGGAAAGAAAAG
510 ACAATCTAAGTTTGTCTCATCTGAAGGACAAACTTTGATTCAATAGAAAATAGTGGAAAGAAAAG
* * * ** * * *
1073615 TTTTTCTTGAGACCCCAAAGCAATAATATCATGTATCCAAATGATTGGAACGTGTTTTTGGTTCC
575 TTTTCCCTGAAACAACAAAGCAACAATATCATGTATCCAAATGATAGGAACGAGTTTTTGGTTCC
* * * * *
1073680 TAATGTCAAAAAAGAATCAAAACCACTATAACAATCCATGTTTGTCTCATTGAAGGGATGAACTT
640 CAATCTCAAAAAAGAATCAAAACAACTACAACAATCCATATTTGTCTCATTGAAGGGATGAACTT
* * * *
1073745 TGATTTTAAGGAAAAGTAGGGTAAAGAAAGGATTTCCTTATGAAGACAAAGCATTAATATCTTGG
705 TGATTTTAAGGAAAAGTAGGGTAAAGAAAAGATTTCCTTACGAAGACAAAGCATCAATATCATGG
1073810 ATCCTAATGAGGAGAACAAGTTTATGGTGGCCAATCACAAAAAAGAATGAGAATCATTACTAGAA
770 ATCCTAATGAGGAGAACAAGTTTATGGTGGCCAATCACAAAAAAGAATGAGAATCATTACTAGAA
* * * *
1073875 TCCATGTTTATTTCATTTGAGCCATGAACTTAGACTCTACAAAAATAGTGGAAGAAAAGCCTTTC
835 TCCATGTTTATCTCATTTAAGCCACGAACTTAGACTCTACAAAAATAGTGGAAGAAAAACCTTTC
1073940 TTACGAAACCAAAGCATCATGTATCCTAATAAGA
900 TTACGAAACCAAAGCATCATGTATCCTAATAAGA
* * * *
1073974 AGAATGTGTTTATGGTGCCTAATCTTGGAAAGAATGAGGATCATTACTAGAATCCAAGTTCGTCT
1 AGAATGTGTTTATGGTGCCTAAACTTGAAAAGAATGAGGATCATGACTAGAATCCAAGTTTGTCT
* * *
1074039 CATTTGAGGCATGAACTTAGACTCTATGGAAAATGGTGGGAAGAAAAGCCTTTCTTGCAAAACCA
66 CATTTGAGGCATGAACTTAGACTCTATGAAAAATGGTGGGAAGAAAAGCTTTTCTTGCAAAAACA
* *** *
1074104 ATGCATTGTTATTGTGTATCCAAATGAGAAG-ATGATGTT-TAAGGCACCTAATCTTCAAAAGAA
131 AAGCATCAATATCGTGTATCCAAATGAGAAGAATGATGTTATAAGG--CCTAATCTTCAAAAGAA
* *
1074167 CAGGGATTATTATGAGAATCTATGTTTGTCTCATTTAAGA-GATGAAC-TTAGATTCTATGAAAA
194 CAGGGATTATTATGAGAATCCATGTTTGTCCCATTTAA-ATGATGAACTTTA-ATTCTATGAAAA
* * * *
1074230 ATAGTGGT-AAAAAAAGCTTTTCTTACAAAGCTAAACCATCAGGGTCATGTGTCCCAATGAGGAT
257 ATAGTGGTAAAAAAAAGCTTTTCCTACAAAGCTAAACCATCAAGGTCATGTATCCAAATGAGGAT
* * * *
1074294 TTTTGGTACCCAATCATGAAAAGAAT-G-G-TTACAA-GAATCTATGTTTGTCTGATTTGAGGGA
322 TTTTGGTACCCAACCATGAAAAGAATGGAGATTA-AAGGAATCCATGTTTGTCTCATTT-AAGGA
*
1074355 CGAACGTTAATTTTAA-AAAAATAGGTCAAAGAAAAGCTTTTCATAGA-AAGCCAAAG-T-GT-T
385 --AACGTTAATTTTAAGAAAAATAGGTCAAAGAAAAGCTTTTC-TAGAGAAGCCAAAGATAATAT
* * * *
1074415 -A-ATAT-GAATGAGGAGAACGTGTTTATGGTGCCCAATTA-AGAAAAGATGGAGATTGTTGCGA
447 CATATATCCAATGAGAAGAACGTGTTTATGCTGCCCAATCATA-AAAAGATGGAGATTGTTGCGA
* * *
1074476 CAATCTGAGTTTGTCTCATCT-AAGGACAAACTTTGATTCTATCA-AAAATAGT-TAACAGAAAA
511 CAATCTAAGTTTGTCTCATCTGAAGGACAAACTTTGATTCAAT-AGAAAATAGTGGAA-AGAAAA
* *
1074538 GTTTTCCCTGAAACAACAAAGACAACAATGTCATTGTATCCTAATGA-AGGAAACGAGTTTTTGG
574 GTTTTCCCTGAAACAACAAAG-CAACAATATCA-TGTATCCAAATGATAGG-AACGAGTTTTTGG
** ** * * * * * *
1074602 TTCCCAATCT-TGAAAAGAATGGAGACAATTACGAGAATCCATATTTTTCTCATTTAAGGGATGA
636 TTCCCAATCTCAAAAAAGAATCAAAACAACTACAACAATCCATATTTGTCTCATTGAAGGGATGA
* * * *
1074666 ACTTTTATTTTAAGGAAAA-T-GGGTAAAGAAAAGCTTTCCTTGCGAA-AGCAAATCATCAATAT
701 ACTTTGATTTTAAGGAAAAGTAGGGTAAAGAAAAGATTTCCTTACGAAGA-CAAAGCATCAATAT
* * ** ** **
1074728 CATGTATCCTATTGAGGA-AACGTGTTTATGGT-GCCAATCA-TGAAACTAATG-G-ATCATTAC
765 CATGGATCCTAATGAGGAGAACAAGTTTATGGTGGCCAATCACAAAAAAGAATGAGAATCATTAC
* * * * *
1074788 TAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTAGACTTTATAGAAAATGGTGGGAA-AAAA
830 TAGAATCCATGTTTATCTCATTTAAGCCACGAACTTAGACTCTACA-AAAATAGT-GGAAGAAAA
** * *
1074852 ACCTTTCTTGTGAAACTAAAGCATTAATATCATGTATCCTAATGAGA
893 ACCTTTCTTACGAAACCAAAGC------ATCATGTATCCTAATAAGA
* *
1074899 AGATTGTGTTTATGGTGCCTAAACTTGAAAAGAATG-GAGATTATGA-TGAGAATCCATA-TTTG
1 AGAATGTGTTTATGGTGCCTAAACTTGAAAAGAATGAG-GATCATGACT-AGAATCCA-AGTTTG
* * * * * *
1074961 TCTCATTTAAGAGTCA--AACTTTGATTCTATGAAAAATGGTGGTAAAAAAAAGCTTTTCTTACA
63 TCTCATTT--GAGGCATGAACTTAGACTCTATGAAAAATGGTGG-GAAGAAAAGCTTTTCTTGCA
1075024 AA
125 AA
1075026 GCTGAACCAT
Statistics
Matches: 878, Mismatches: 142, Indels: 80
0.80 0.13 0.07
Matches are distributed among these distances:
918 47 0.05
919 30 0.03
920 11 0.01
921 8 0.01
922 13 0.01
923 51 0.06
924 51 0.06
925 231 0.26
926 51 0.06
927 8 0.01
928 1 0.00
929 1 0.00
930 1 0.00
932 23 0.03
933 6 0.01
934 32 0.04
935 15 0.02
936 1 0.00
937 1 0.00
938 77 0.09
939 11 0.01
940 127 0.14
941 6 0.01
942 75 0.09
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (933 bp):
AGAATGTGTTTATGGTGCCTAAACTTGAAAAGAATGAGGATCATGACTAGAATCCAAGTTTGTCT
CATTTGAGGCATGAACTTAGACTCTATGAAAAATGGTGGGAAGAAAAGCTTTTCTTGCAAAAACA
AAGCATCAATATCGTGTATCCAAATGAGAAGAATGATGTTATAAGGCCTAATCTTCAAAAGAACA
GGGATTATTATGAGAATCCATGTTTGTCCCATTTAAATGATGAACTTTAATTCTATGAAAAATAG
TGGTAAAAAAAAGCTTTTCCTACAAAGCTAAACCATCAAGGTCATGTATCCAAATGAGGATTTTT
GGTACCCAACCATGAAAAGAATGGAGATTAAAGGAATCCATGTTTGTCTCATTTAAGGAAACGTT
AATTTTAAGAAAAATAGGTCAAAGAAAAGCTTTTCTAGAGAAGCCAAAGATAATATCATATATCC
AATGAGAAGAACGTGTTTATGCTGCCCAATCATAAAAAGATGGAGATTGTTGCGACAATCTAAGT
TTGTCTCATCTGAAGGACAAACTTTGATTCAATAGAAAATAGTGGAAAGAAAAGTTTTCCCTGAA
ACAACAAAGCAACAATATCATGTATCCAAATGATAGGAACGAGTTTTTGGTTCCCAATCTCAAAA
AAGAATCAAAACAACTACAACAATCCATATTTGTCTCATTGAAGGGATGAACTTTGATTTTAAGG
AAAAGTAGGGTAAAGAAAAGATTTCCTTACGAAGACAAAGCATCAATATCATGGATCCTAATGAG
GAGAACAAGTTTATGGTGGCCAATCACAAAAAAGAATGAGAATCATTACTAGAATCCATGTTTAT
CTCATTTAAGCCACGAACTTAGACTCTACAAAAATAGTGGAAGAAAAACCTTTCTTACGAAACCA
AAGCATCATGTATCCTAATAAGA
Found at i:1074981 original size:158 final size:154
Alignment explanation
Indices: 1074554--1075833 Score: 449
Period size: 158 Copynumber: 8.2 Consensus size: 154
1074544 CCTGAAACAA
* * * * * *
1074554 CAAAGACAACAATGTCATTGTATCCTAATGAAGGAAACGAGTTTTTGGTTCCCAATCTTGAAAAG
1 CAAAG-CATCAATATCA-TGTATCCTAATG-AGGAAACGTGTTTATGG-TGCCAAACTTGAAAAG
** * * * *
1074619 AATGGAGACAATTACGAGAATCCATATTTTTCTCATTTAAGGGAT-GAACTTTTATTT-TAAGGA
62 AATGGAGATTA-TATGAGAATCCATATTTGTCTCATTTAA-GG-TCAAACTTTGATTTAT-A-GA
*
1074682 AAAT-G-GGTAAAGAAAAGCTTTCCTTGCGAAAG
122 AAATGGTGGTAAA-AAAACCTTTCCTTGCGAAAG
* * * * **
1074714 CAAATCATCAATATCATGTATCCTATTGAGGAAACGTGTTTATGGTGCCAATCATGAAACTAATG
1 CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCCAAACTTGAAAAGAATG
* * * *
1074779 GATCATTA-CT-AGAATCCATGTTTGTCTCATTTAAGG-CACGAACTTAGACTTTATAGAAAATG
66 GA-GATTATATGAGAATCCATATTTGTCTCATTTAAGGTCA--AACTTTGA-TTTATAGAAAATG
* *
1074841 GTGGGAAAAAAACCTTT-CTTGTGAAA-
127 GTGGTAAAAAAACCTTTCCTTGCGAAAG
* *
1074867 CTAAAGCATTAATATCATGTATCCTAATGA-GAAGATTGTGTTTATGGTGCCTAAACTTGAAAAG
1 C-AAAGCATCAATATCATGTATCCTAATGAGGAA-A-CGTGTTTATGGTGCC-AAACTTGAAAAG
1074931 AATGGAGATTATGATGAGAATCCATATTTGTCTCATTTAAGAGTCAAACTTTGATTCTAT-GAAA
62 AATGGAGATTAT-ATGAGAATCCATATTTGTCTCATTTAAG-GTCAAACTTTGATT-TATAG-AA
* * *
1074995 AATGGTGGTAAAAAAAAGCTTTTCTTAC-AAAG
123 AATGGTGGT-AAAAAAACCTTTCCTTGCGAAAG
* * * * * * * * *
1075027 CTGAACCATCAATGTCATATAT-CTGAATGAGG--A--T-TTT-TGACTGTCGAACCATGAATAG
1 C-AAAGCATCAATATCATGTATCCT-AATGAGGAAACGTGTTTATG-GTG-CCAAACTTGAAAAG
* ** * * * *
1075085 AATGGAGACTATTACAAGAATCCATATTTGTCTCATTTGAGGGACGAACTTTGATTTTAGAGAAA
62 AATGGAGATTA-TATGAGAATCCATATTTGTCTCATTT-AAGGTCAAACTTTGA-TTTATAGAAA
* ** * * *
1075150 ATAG-GCCAAAGAAAAGCTTTTCTTACG-AAG
124 ATGGTGGTAAA-AAAACCTTTCCTTGCGAAAG
* ** * * ** **
1075180 TCAAAGCATCAATATCGTGTATCAGAATAAGAAGAACAAGTTTATGGTGCCCAAACTCAAAAAG-
1 -CAAAGCATCAATATCATGTATCCTAATGAGGA-AACGTGTTTATGGTG-CCAAACTTGAAAAGA
* * * * ** * *
1075244 ATGGAGATTGTTACGACAATCTAGGTTTGTCTCATTTGAAGGTCAAACTCTAATTTTATCA-AAA
63 ATGGAGATT-ATATGAGAATCCATATTTGTCTCATTT-AAGGTCAAACTTTGA-TTTAT-AGAAA
** ** * * * * *
1075308 ATGGTGG-ACAAACGAGTTTTTCTGGAGACAC
124 ATGGTGGTA-AAAAAACCTTTCCTTGCGAAAG
* * * * * * * *** * *
1075339 CAAAGTATCAATGTCTTGTATCCCAATGAAGGGAACGTATTTTTGGTTTTAATCTAGAAAAGAAT
1 CAAAGCATCAATATCATGTATCCTAATG-AGGAAACGTGTTTATGGTGCCAAACTTGAAAAGAAT
* * * * * *
1075404 GGAG-TCTATTATGA-AATCCTTGTTTATCTCATTCAAGGGAT-TAACATTGATTTCA-AGGAAA
65 GGAGAT-TA-TATGAGAATCCATATTTGTCTCATTTAA-GG-TCAAACTTTGATTT-ATA-GAAA
* * * *
1075465 ATGG-GG-CAAAAAAGCTTTCCGT-CAAAAG
124 ATGGTGGTAAAAAAACCTTTCCTTGCGAAAG
* ** * * * * *
1075493 CAAACCATCAATATTGTGTATCCTAACGA-G-AACATGTATATGGTGCCTAATTGTGAAAAGAAT
1 CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCCAAACT-TGAAAAGAAT
** * * * ** * *
1075556 AAAGATCGT-TACT-AAAATCTATATTTGTCTCATTTGAGG-CATGAACTTCAAATCTATGGAAA
65 GGAGAT--TATA-TGAGAATCCATATTTGTCTCATTTAAGGTCA--AACTT-TGATTTATAGAAA
** *
1075618 ATAATGG-AAAGAAAAGCCTTT-CTTGCGAAAC
124 ATGGTGGTAAA-AAAA-CCTTTCCTTGCGAAAG
* *
1075649 CAAAG---CAATATCATGTATCCTAATGAGAAGAAGGTGTTT-TGGTGCCAAATCTTGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAGGA-AACGTGTTTATGGTGCCAAA-CTTGAAAAGAA
* * * * *
1075710 TAGG-CATTATTGTGAAAATCCATGTTTGTCTCATTTAAGAGAT-GAACTTTGATTCTAT-GAAA
64 T-GGAGATTA-TATGAGAATCCATATTTGTCTCATTTAAG-G-TCAAACTTTGATT-TATAG-AA
* **
1075772 AATGGTGGTTAAAAAAGTTTTCCTTGC-AAAG
123 AATGGTGGTAAAAAAACCTTTCCTTGCGAAAG
* * *
1075803 CCAAA-CTATTAATGTCATGTATCCCAATGAG
1 -CAAAGC-ATCAATATCATGTATCCTAATGAG
1075834 AATTTTTAGT
Statistics
Matches: 821, Mismatches: 210, Indels: 180
0.68 0.17 0.15
Matches are distributed among these distances:
151 12 0.01
152 20 0.02
153 96 0.12
154 175 0.21
155 128 0.16
156 68 0.08
157 61 0.07
158 181 0.22
159 46 0.06
160 33 0.04
161 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (154 bp):
CAAAGCATCAATATCATGTATCCTAATGAGGAAACGTGTTTATGGTGCCAAACTTGAAAAGAATG
GAGATTATATGAGAATCCATATTTGTCTCATTTAAGGTCAAACTTTGATTTATAGAAAATGGTGG
TAAAAAAACCTTTCCTTGCGAAAG
Found at i:1076150 original size:778 final size:772
Alignment explanation
Indices: 1073984--1077183 Score: 2324
Period size: 778 Copynumber: 4.1 Consensus size: 772
1073974 AGAATGTGTT
* *
1073984 TATGGTGCCTAATCTTGGAAAGAATGAGGATCATTACTAGAATCCA-AGTTCGTCTCATTTGAGG
1 TATGGTGCCTAAT-TTGAAAAGAAT-AGGATCATTACTAGAATCCATA-TTTGTCTCATTTGAGG
* * * *
1074048 CATGAACTTAGACTCTATGGAAAATGGTGGGAAGAAAAGCCTTTCTTGCAAAACCAATGCATTGT
63 CATGAACTTAGACTCTATGGAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAAACCAAAGCA---A
** * * * ** * * *
1074113 TATTGTGTATCCAAATGAGAAGATGATGTTTAAGGCACCTAATCTTCAAAAGAACAGGGATTATT
125 TATCATGTATCCTAATGAGAAGATGGTGTTTATGGTGCCAAATCTTGAAAAGAATAGGGATTATT
* * * *
1074178 ATGAGAATCTATGTTTGTCTCATTTAAGAGATGAACTTAGATTCTATGAAAAATAGTGGTAAAAA
190 GTGAGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAA
** * * * *
1074243 AAGCTTTTCTTACAAAGCTAAACCATCAGGGTCATGTGTCCCAATGAGGATTTTTGGTACCCAAT
255 AAGCTTTTCTTACAAAGCTAAACCATCAATGTCATGTATCCCAATGAGGATTTTTAGTGCCCGAT
* * **
1074308 CATGAAAAGAAT-G-G--T-TACAAGAATCTATGTTTGTCTGATTTGAGGGACGAACGTTAATTT
320 CATG-AAAGAATGGAGACTATACAAGAATCCATGTTTGTCT-CTTTGAGGGACGAA-GTTTGTTT
* * *
1074368 TAAA-AAAATAGGTCAAAGAAAAGCTTTTCATAGAAAGCCAAAG---TG-T-T-A-ATA--TGAA
382 TAAAGAAAATAGCTCAAAGAAAAGCTTTTCTTACAAAGCCAAAGCATTGATATCATATATCTGAA
* * * *
1074423 TGAGGAGAACGTGTTTATGGTGCCCAATTAAGAAAAGATGGAGATTGTTGCGACAATCTGAGTTT
447 TGA-GA-AAAGTGTTTATGGTGCCCAATTTAGAAAAGATGGAGATTGATG-G-CAATCTAAGTTT
* * * * * *
1074488 GTCTCATCTAAG-GACAAACTTTGATTCTATCAAAAATAGT-TAACAGAAAAGTTTTCCCTGAAA
508 GTCTCATTTGAGAGACAAACTTTGATTCTATCAAAAATAGTGGAA-AGAAAAGTTTTTCTTGAGA
* * * * * *
1074551 CAACAAAGACAACAATGTCATTGTATCCTAATGAAGGAAACG-AGTTTTTGGTTCCCAATCTTGA
572 CACCAAA-ATATCAATGTCA-TGTATCCCAATGAAGGGAACGTA-TTTTTGGTTCCCAATCTAGA
* * * * *
1074615 AAAGAATGGAGACAATTACGAGAATCCATATTTTTCTCATTTAAGGGATGAACTTTTATTTTAAG
634 AAAGAATGGAGACAATTACGAGAATCCATATTTATCTCATTCAAGGGATGAACATTGATTTCAAG
* * * * **
1074680 GAAAATGGGTAAAGAAAAGCTTTCCTTGCGAAAGCAAATCATCAATATCATGTATCCTATTGAGG
699 GAAAATGGGGAAAGAAAAGCTTTCCGTGCAAAAGCAAACCATCAATATCATGTATCCTAACGAGG
* *
1074745 AAACGTGTT
764 AAACATGTA
* ** * *
1074754 TATGGTGCC-AATCATGAAACTAAT-GGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCA
1 TATGGTGCCTAAT-TTGAAAAGAATAGGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCA
* * * * *
1074817 CGAACTTAGACTTTATAGAAAATGGTGGGAAA-AAAA-CCTTTCTTGTGAAACTAAAGCATTAAT
65 TGAACTTAGACTCTATGGAAAATGGT-GGAAAGAAAAGCCTTTCTTGCGAAACCAAAGC---AAT
*
1074880 ATCATGTATCCTAATGAGAAGATTGTGTTTATGGTGCCTAAA-CTTGAAAAGAAT-GGAGATTA-
126 ATCATGTATCCTAATGAGAAGATGGTGTTTATGGTGCC-AAATCTTGAAAAGAATAGG-GATTAT
* *
1074942 TGATGAGAATCCATATTTGTCTCATTTAAGAG-TCAAACTTTGATTCTATGAAAAATGGTGGTAA
189 TG-TGAGAATCCATGTTTGTCTCATTTAAGAGAT-GAACTTTGATTCTATGAAAAATGGTGGT-A
* * ** *
1075006 AAAAAAGCTTTTCTTACAAAGCTGAACCATCAATGTCATATATCTGAATGAGGATTTTTGACTG-
251 AAAAAAGCTTTTCTTACAAAGCTAAACCATCAATGTCATGTATCCCAATGAGGATTTTT-AGTGC
* * * *
1075070 TCGAACCATGAATAGAATGGAGACTATTACAAGAATCCATATTTGTCTCATTTGAGGGACGAACT
315 CCG-ATCATGAA-AGAATGGAGACTA-TACAAGAATCCATGTTTGTCTC-TTTGAGGGACGAAGT
* * * ** * *
1075135 TTGATTTTAGAGAAAATAGGC-CAAAGAAAAGCTTTTCTTACGAAGTCAAAGCATCAATATCGTG
376 TTG-TTTTAAAGAAAATA-GCTCAAAGAAAAGCTTTTCTTACAAAGCCAAAGCATTGATATCATA
* * ** * * * *
1075199 TATCAGAATAAGAAGAACAAGTTTATGGTGCCCAAACTCA-AAAAGATGGAGATTGTTACGACAA
439 TATCTGAATGAGAA-AA-GTGTTTATGGTGCCC-AATTTAGAAAAGATGGAGATTG--ATGGCAA
* * * * * * **
1075263 TCTAGGTTTGTCTCATTTGA-AGGTCAAACTCTAATTTTATCAAAAATGGTGGACAA-ACGAGTT
499 TCTAAGTTTGTCTCATTTGAGA-GACAAACTTTGATTCTATCAAAAATAGTGGA-AAGAAAAGTT
* * * **
1075326 TTTCTGGAGACACCAAAGTATCAATGTCTTGTATCCCAATGAAGGGAACGTATTTTTGGTT-TTA
562 TTTCTTGAGACACCAAAATATCAATGTCATGTATCCCAATGAAGGGAACGTATTTTTGGTTCCCA
* * * * * *
1075390 ATCTAGAAAAGAATGGAGTCTATTATGA-AATCCTTGTTTATCTCATTCAAGGGATTAACATTGA
627 ATCTAGAAAAGAATGGAGACAATTACGAGAATCCATATTTATCTCATTCAAGGGATGAACATTGA
* **
1075454 TTTCAAGGAAAATGGGGCAA-AAAAGCTTTCCGT-CAAAAGCAAACCATCAATATTGTGTATCCT
692 TTTCAAGGAAAATGGGGAAAGAAAAGCTTTCCGTGCAAAAGCAAACCATCAATATCATGTATCCT
1075517 AACGA-G-AACATGTA
757 AACGAGGAAACATGTA
* * * *
1075531 TATGGTGCCTAATTGTGAAAAGAATAAAGATCGTTACTAAAATCTATATTTGTCTCATTTGAGGC
1 TATGGTGCCTAATT-TGAAAAGAAT-AGGATCATTACTAGAATCCATATTTGTCTCATTTGAGGC
* **
1075596 ATGAACTTCA-AATCTATGGAAAATAATGGAAAGAAAAGCCTTTCTTGCGAAACCAAAGCAATAT
64 ATGAACTT-AGACTCTATGGAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAAACCAAAGCAATAT
* *
1075660 CATGTATCCTAATGAGAAGAAGGTGTTT-TGGTGCCAAATCTTGAAAAGAATAGGCATTATTGTG
128 CATGTATCCTAATGAGAAGATGGTGTTTATGGTGCCAAATCTTGAAAAGAATAGGGATTATTGTG
* *
1075724 AAAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTTAAAAAAG
193 AGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAG
* * * * *
1075789 -TTTTCCTTGCAAAGCCAAACTATTAATGTCATGTATCCCAATGAGAATTTTTAGTGCCCGATCA
258 CTTTT-CTTACAAAGCTAAACCATCAATGTCATGTATCCCAATGAGGATTTTTAGTGCCCGATCA
1075853 TGAAAGGAATGGAGACTACTACAAGAATCCATGTTTGTCTCTCTTGAGGGAC-AAGTTTTGTTTT
322 TGAAA-GAATGGAGACTA-TACAAGAATCCATGTTTGTCTCT-TTGAGGGACGAAG-TTTGTTTT
* * *
1075917 AAAGGAAAATAGCTGAAAGAAAAGCTTTTTTTTTTCCAAAGCCAAAGCATTGATATCATATATCT
383 AAA-GAAAATAGCTCAAAGAAAAGC---TTTTCTTACAAAGCCAAAGCATTGATATCATATATCT
* * * * * *
1075982 CAATGTAGTAAAAGTGTTTATAGTGCCCAATTTGGAAAAGATAGAGATAGCCATGGCAATCCAAG
444 GAATG-AG-AAAAGTGTTTATGGTGCCCAATTTAGAAAAGATGGAGATTG--ATGGCAATCTAAG
* * * * *
1076047 TTTGTCTCATTTGAGAGAAAAACTTTGATTCTACCAAAAATAGTGGAAAGAAAATTTTTTGTTTA
505 TTTGTCTCATTTGAGAGACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTGA
* * * *
1076112 GATACCAAAATATCAAGGTCATGTATCCCAAGGAAGGGAACGTGTTTTTGGTT-CCAATCTCAAG
570 GACACCAAAATATCAATGTCATGTATCCCAATGAAGGGAACGTATTTTTGGTTCCCAATCT--AG
* ** * * * ** * * * * *
1076176 AATATTAT--AGACTACTACAAGAATCCATGCTTGTCCCATTTAGGGGATGAA-ATTTGATTTTA
633 AAAAGAATGGAGACAATTACGAGAATCCATATTTATCTCATTCAAGGGATGAACA-TTGATTTCA
*** * * * ** * * *
1076238 CCAAAAATGGGGAAATGAAAAACTTTCCTTGCGAAATTAAATCATCAATATCATGTATCCCAATG
697 AGGAAAATGGGGAAA-GAAAAGCTTTCCGTGCAAAAGCAAACCATCAATATCATGTATCCTAACG
* *
1076303 AAGAGAACATGTT
761 AGGA-AACATGTA
*
1076316 TATGGTGTCC-AATCATGAAAA-AATAAGGATCATTACTAG-A--C-----T-T-T-A--T---G
1 TATGGTG-CCTAAT-TTGAAAAGAAT-AGGATCATTACTAGAATCCATATTTGTCTCATTTGAGG
* * *
1076363 ---G-A---A-A----ATGG----T-G-AG-AAGAAAAGCCTTTCTTGCAAAATCAAAGCACTAA
63 CATGAACTTAGACTCTATGGAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAAACCAAAG--C-AA
* * * *
1076409 TATTATGTATCCTAATGAGAAGATGATGTTTAAGGTGCCTAATCTTGAAAAGAAT-GAGGATTAT
125 TATCATGTATCCTAATGAGAAGATGGTGTTTATGGTGCCAAATCTTGAAAAGAATAG-GGATTAT
* * * ** * * *
1076473 TATAAGAATCCATGTTTGTCGT-GTTTAAGAGACAAACTTTGACTCTTTGAAAAATGGTTGTTAA
189 TGTGAGAATCCATGTTTGTC-TCATTTAAGAGATGAACTTTGATTCTATGAAAAATGG-TGGT-A
* ** * * * *** * * *
1076537 AAAAAAACTTTTCTTGTAAAGCCAAACTATCAATGTCATGCATTTGAATGAAGA-TTTTGGTGTC
251 AAAAAAGCTTTTCTTACAAAGCTAAACCATCAATGTCATGTATCCCAATGAGGATTTTTAGTGCC
* * * * * * * * * * *
1076601 CAACCATGAAAAGAATGAAGATTATTACAGGAATCTATCTTTGTCTTATTTTAGGGACAAACTTT
316 CGATCATG-AAAGAATGGAGACTA-TACAAGAATCCATGTTTGTC-TCTTTGAGGGACGAAGTTT
* * * * ** * *
1076666 GATTTTGAGGAAAATGGGTCAAAGAAAAGCTTTTCTTATGAAGCCAAAGCA-TCATTATCATGTA
378 G-TTTTAAAGAAAATAGCTCAAAGAAAAGCTTTTCTTACAAAGCCAAAGCATTGA-TATCATATA
* * * * * **
1076730 GGCCAAT-AAGGAGAACA-TGTTTATGGTGCCCAA-TCATGAAAAGAAGGAGATTG-TTACAACT
441 --TC--TGAATGAGAAAAGTGTTTATGGTGCCCAATTTA-GAAAAGATGGAGATTGATGGC-A--
* *
1076791 ATCCAAGTTTGTCTCATTTGAGGGACAAACTTTGATTCTATCAAAAAT-GATGGAAAGAAAAGTT
498 ATCTAAGTTTGTCTCATTTGAGAGACAAACTTTGATTCTATCAAAAATAG-TGGAAAGAAAAGTT
* * *** *** * * * * * *
1076855 TTCCTTTAGACAATTAGGCATCATTGTCAAGTATCCCACTGAAGGGAACATGTTTTTGGTTCCCT
562 TTTCTTGAGACACCAAAATATCAATGTCATGTATCCCAATGAAGGGAACGTATTTTTGGTTCCCA
* * * * * * * * * * *
1076920 ATCTTGAAAAGAATGGAGACTATTAAGAGAATCCTTAGTTGTCTTATTTAATGGATGAACTTTAA
627 ATCTAGAAAAGAATGGAGACAATTACGAGAATCCATATTTATCTCATTCAAGGGATGAACATTGA
* * * * * *
1076985 TTTTAAAGAAAATGGGGCACATAAAAGCTTTCCTTGCAAAAGCAAATCATCAATATCATGTATCC
692 TTTCAAGGAAAATGGGG-AAAGAAAAGCTTTCCGTGCAAAAGCAAACCATCAATATCATGTATCC
* *
1077050 TAATGAGGAGGAGA-ATGTGTT
756 TAACGAGGA--A-ACA--TGTA
* ** * * * *
1077071 TATGGTGCCCAAAAATGAAAAGAATGAAGATCATTACTAGTATCCA-AGCTTGTCTTATTTGAGG
1 TATGGTG-CCTAATTTGAAAAGAAT-AGGATCATTACTAGAATCCATA-TTTGTCTCATTTGAGG
* ** * *
1077135 CACGATGTTAGACTCTATAGAAAGTGGTGGAAA-AAAGAGCACTTTCTTG
63 CATGAACTTAGACTCTATGGAAAATGGTGGAAAGAAA-AGC-CTTTCTTG
1077184 TTCTTTGAAT
Statistics
Matches: 1919, Mismatches: 360, Indels: 280
0.75 0.14 0.11
Matches are distributed among these distances:
748 2 0.00
749 27 0.01
750 11 0.01
751 158 0.08
752 137 0.07
753 82 0.04
754 79 0.04
755 73 0.04
756 26 0.01
757 1 0.00
759 1 0.00
760 2 0.00
764 2 0.00
765 6 0.00
766 116 0.06
767 121 0.06
768 16 0.01
769 14 0.01
770 10 0.01
771 1 0.00
772 2 0.00
773 3 0.00
774 51 0.03
775 111 0.06
776 52 0.03
777 97 0.05
778 221 0.12
779 83 0.04
780 78 0.04
781 77 0.04
782 55 0.03
783 33 0.02
784 79 0.04
785 67 0.03
786 5 0.00
787 1 0.00
788 1 0.00
789 1 0.00
790 4 0.00
791 5 0.00
792 8 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (772 bp):
TATGGTGCCTAATTTGAAAAGAATAGGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAT
GAACTTAGACTCTATGGAAAATGGTGGAAAGAAAAGCCTTTCTTGCGAAACCAAAGCAATATCAT
GTATCCTAATGAGAAGATGGTGTTTATGGTGCCAAATCTTGAAAAGAATAGGGATTATTGTGAGA
ATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTT
TTCTTACAAAGCTAAACCATCAATGTCATGTATCCCAATGAGGATTTTTAGTGCCCGATCATGAA
AGAATGGAGACTATACAAGAATCCATGTTTGTCTCTTTGAGGGACGAAGTTTGTTTTAAAGAAAA
TAGCTCAAAGAAAAGCTTTTCTTACAAAGCCAAAGCATTGATATCATATATCTGAATGAGAAAAG
TGTTTATGGTGCCCAATTTAGAAAAGATGGAGATTGATGGCAATCTAAGTTTGTCTCATTTGAGA
GACAAACTTTGATTCTATCAAAAATAGTGGAAAGAAAAGTTTTTCTTGAGACACCAAAATATCAA
TGTCATGTATCCCAATGAAGGGAACGTATTTTTGGTTCCCAATCTAGAAAAGAATGGAGACAATT
ACGAGAATCCATATTTATCTCATTCAAGGGATGAACATTGATTTCAAGGAAAATGGGGAAAGAAA
AGCTTTCCGTGCAAAAGCAAACCATCAATATCATGTATCCTAACGAGGAAACATGTA
Found at i:1077634 original size:28 final size:27
Alignment explanation
Indices: 1077600--1077681 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 27
1077590 TCCCTCTTTA
1077600 TTGATTTCTCTTCCTTTGATATTTCTTG
1 TTGATTTCTCTTCC-TTGATATTTCTTG
* *
1077628 CTT-ATTT-TGTTTCCCTTCATATTTCTTG
1 -TTGATTTCT-CTT-CCTTGATATTTCTTG
* *
1077656 TTGATTTCACTTCCTTGATCTTTCTT
1 TTGATTTCTCTTCCTTGATATTTCTT
1077682 ATTTATTAAT
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
27 15 0.35
28 24 0.56
29 4 0.09
ACGTcount: A:0.11, C:0.21, G:0.09, T:0.60
Consensus pattern (27 bp):
TTGATTTCTCTTCCTTGATATTTCTTG
Found at i:1088228 original size:13 final size:13
Alignment explanation
Indices: 1088210--1088234 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1088200 ATTCATCATA
1088210 TATCGATACAATG
1 TATCGATACAATG
1088223 TATCGATACAAT
1 TATCGATACAAT
1088235 ATACCATGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.12, T:0.32
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:1088238 original size:20 final size:20
Alignment explanation
Indices: 1088215--1088253 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
1088205 TCATATATCG
1088215 ATACAATGTATCGATACAAT
1 ATACAATGTATCGATACAAT
*
1088235 ATACCATGTATCGATACAA
1 ATACAATGTATCGATACAA
1088254 ACAGTGATAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.18, G:0.10, T:0.28
Consensus pattern (20 bp):
ATACAATGTATCGATACAAT
Found at i:1091581 original size:158 final size:155
Alignment explanation
Indices: 1091187--1092077 Score: 393
Period size: 160 Copynumber: 5.7 Consensus size: 155
1091177 AACCATGAAT
*
1091187 AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCATTTGA-GGATGAACTTTGATTTTGAA-G
1 AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTT-AAGG
* * * * *
1091250 AAAAT-GGGTCAAAGAAAAGCTTTTCTTGTGAAGCCAAAGCATCAATATCATGTATCCCAGTGAG
65 AAAATGGGGT--AA-AAAAGCTTTTCTCGGGAAGCCAAAGCATCAATATCATGCATCCCAATGAC
*
1091314 GAGAATGTGTGTATGGTCCCTGATCATAA
127 GAGAAAGTGTGTATGGTCCCTGATCATAA
* * * * * * * * ** * *
1091343 AAAGATGGAGATTGTTTCAACAATTCAAGGTTGTCTCAGTTTAGGGACAAACTTTGATTCTATGG
1 AGA-ATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTTAAGG
* *
1091408 AAAGTGGTGG-AAAAAATG-TTCTTCTCGGGACA-CCAAAGCATCAGTATCATGCATCCCAATGA
65 AAAATGG-GGTAAAAAA-GCTT-TTCTCGGGA-AGCCAAAGCATCAATATCATGCATCCCAATGA
* * *
1091470 CGAGAACAG-GTTTTTGGTTCCCAAT-CTCATAA
126 CGAGAA-AGTGTGTATGG-TCCC--TGATCATAA
* *
1091502 AGAATGGAGACTACTACAAGAATCCATGTTTGTCTCA-TTGAAGGGATGAACTTTGATTTTAAGG
1 AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTG-AGGGATGAACTTTGATTTTAAGG
* * * * * *** *
1091566 AAAAATGGGGTAAAAAAAGGCTTTCCTTGCGAAGCCAAAGCATTAATATCATGTATATGAATGAG
65 -AAAATGGGGT-AAAAAA-GCTTTTCTCGGGAAGCCAAAGCATCAATATCATGCATCCCAATGAC
* * * * * * *
1091631 GACAACAG-GTTTGTGATGCCTAATCAAGGAA
127 GAGAA-AGTGTGTATGGTCCCTGATC-A-TAA
* * * * * * * * * * * *
1091662 AGAAT-AATGATTATTACTAGAATCCATGCTTGTCTCATTTGAGGCATGAACTTAGACTCTACGA
1 AGAATGGA-GACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTTAAGG
* * * * * * * *
1091726 AAAATGGTGG-AAAAAAGCCTTTCT-----TGCAAAACCATCAATATTAAT--ATCCTAA-AAAG
65 AAAATGG-GGTAAAAAAGCTTTTCTCGGGAAGCCAAAGCATCAATA-TCATGCATCCCAATGACG
* * * *
1091782 AAGAAAGTGTTTATGGTGCCTAATCTTGAAAA
128 -AGAAAGTGTGTATGGTCCCTGATC---ATAA
* * * ** * * * * *
1091814 AAAATGGGGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGATTTT-ATGA
1 AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTTAAGGA
* * *** * * * *
1091878 AAATTGGTGGCAAAAAAAGCTTATCTTTTGAAGCCAAACCATCAGTTTCATGTATCCCAATGA-G
66 AAA-TGG-GG-TAAAAAAGCTTTTCTCGGGAAGCCAAAGCATCAATATCATGCATCCCAATGACG
* *
1091942 -G--A-T-T-TTTGGTGCCC-CATCATGAAA
128 AGAAAGTGTGTATGGT-CCCTGATCAT--AA
* * * *
1091966 AGAATGGAGACTATTACAAGAATCCATGTTTGTCTCA-TTGAGGGATAAACTTTGATTCTAGGGA
1 AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTTAAGGA
* * ** *
1092030 AAATGGGCTAAAGAAAAGCTTTTCTTGCAAAGTCAAAGCATCAATATC
66 AAATGGGGT-AA-AAAAGCTTTTCTCGGGAAGCCAAAGCATCAATATC
1092078 GTGTATCGTA
Statistics
Matches: 555, Mismatches: 133, Indels: 99
0.71 0.17 0.13
Matches are distributed among these distances:
150 8 0.01
151 74 0.13
152 106 0.19
153 12 0.02
154 15 0.03
155 1 0.00
156 9 0.02
157 89 0.16
158 84 0.15
159 40 0.07
160 111 0.20
161 6 0.01
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (155 bp):
AGAATGGAGACTATTACAAGAATTCATGTTTGTCTCAGTTGAGGGATGAACTTTGATTTTAAGGA
AAATGGGGTAAAAAAGCTTTTCTCGGGAAGCCAAAGCATCAATATCATGCATCCCAATGACGAGA
AAGTGTGTATGGTCCCTGATCATAA
Found at i:1092032 original size:152 final size:153
Alignment explanation
Indices: 1091180--1092084 Score: 580
Period size: 152 Copynumber: 5.8 Consensus size: 153
1091170 TATGCACAAC
* *
1091180 CATGAATAGAATGGAGACTATTACAAGAATTCATGTTTGTCTCATTTGA-GGATGAACTTTGATT
1 CATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT
* * *
1091244 -TTGAAGAAAATGG-GTCAAAGAAAAGCTTTTCTTGTGAAGCCAAAGCATCAATATCATGTATCC
66 CTAGGA-AAAATGGTG-GAAA-AAAAGC-TTTCTTGTGAAGCCAAAGCATCAATATCATGTATCC
* * *
1091307 CAGTGAGGAGAATGTGTGTATGGT-CCCTGAT
127 CAATGA-GAGAA-GT-T-TTTGGTGCCC-AAT
* * * * * * * * **
1091338 CATAAAAAG-ATGGAGATTGTTTCAACAATTCAAGGTTGTCTCAGTTT-AGGGACAAACTTTGAT
1 CATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCA-TTTGAGGGATGAACTTTGAT
* * * * * * *
1091401 TCTATGG-AAAGTGGTGGAAAAAATGTTCTTCTCGGGACA-CCAAAGCATCAGTATCATGCATCC
65 TCTA-GGAAAAATGGTGGAAAAAAAGCT-TTCTTGTGA-AGCCAAAGCATCAATATCATGTATCC
*
1091464 CAATGACGAGAACAGGTTTTTGGTTCCCAAT
127 CAATGA-GAG-A-A-GTTTTTGGTGCCCAAT
* *
1091495 C-TCATAAAGAATGGAGACTACTACAAGAATCCATGTTTGTCTCA-TTGAAGGGATGAACTTTGA
1 CATGA-AAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTG-AGGGATGAACTTTGA
* * *
1091558 TTTTAAGGAAAAATGG-GGTAAAAAAAGGCTTTCCTTGCGAAGCCAAAGCATTAATATCATGTAT
64 TTCT-AGGAAAAATGGTGG-AAAAAAA-GCTTT-CTTGTGAAGCCAAAGCATCAATATCATGTAT
*** * * * *
1091622 ATGAATGAGGACAACAGGTTTGTGATGCCTAAT
125 CCCAATGA-GA-GA-A-GTTTTTGGTGCCCAAT
* * * * * * * * *
1091655 CAAGGAAAGAAT-AATGATTATTACTAGAATCCATGCTTGTCTCATTTGAGGCATGAACTTAGAC
1 CATGAAAAGAATGGA-GACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAT
* * * * * *
1091719 TCTACGAAAAATGGTGG-AAAAAAGCCTTTC-T-T---GCAAAACCATCAATATTA-ATATCCTA
65 TCTAGGAAAAATGGTGGAAAAAAAG-CTTTCTTGTGAAGCCAAAGCATCAATATCATGTATCCCA
** *
1091777 AAAAGAAGAAAGTGTTTATGGTGCCTAAT
129 ATGAG-AG-AAGT-TTT-TGGTGCCCAAT
* * * * ** * *
1091806 CTTGAAAAAAAATGGGGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGAACTTTGAT
1 CATG-AAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGAT
* * * * * * *
1091871 TTTATGAAAATTGGTGGCAAAAAAAGCTTATCTTTTGAAGCCAAACCATCAGTTTCATGTATCCC
65 TCTAGGAAAAATGGTGG-AAAAAAAGCTT-TCTTGTGAAGCCAAAGCATCAATATCATGTATCCC
*
1091936 AATGAG-G-A-TTTTTGGTGCCCCAT
128 AATGAGAGAAGTTTTTGGTGCCCAAT
*
1091959 CATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCA-TTGAGGGATAAACTTTGATT
1 CATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT
* * ** * *
1092023 CTAGGGAAAATGG-GCTAAAGAAAAGCTTTTCTTGCAAAGTCAAAGCATCAATATCGTGTATC
66 CTAGGAAAAATGGTG-GAAA-AAAAGC-TTTCTTGTGAAGCCAAAGCATCAATATCATGTATC
1092085 GTAACAAGGA
Statistics
Matches: 573, Mismatches: 130, Indels: 95
0.72 0.16 0.12
Matches are distributed among these distances:
149 2 0.00
150 8 0.01
151 77 0.13
152 112 0.20
153 15 0.03
154 12 0.02
155 2 0.00
156 8 0.01
157 84 0.15
158 95 0.17
159 46 0.08
160 109 0.19
161 3 0.01
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.30
Consensus pattern (153 bp):
CATGAAAAGAATGGAGACTATTACAAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT
CTAGGAAAAATGGTGGAAAAAAAGCTTTCTTGTGAAGCCAAAGCATCAATATCATGTATCCCAAT
GAGAGAAGTTTTTGGTGCCCAAT
Found at i:1093087 original size:309 final size:310
Alignment explanation
Indices: 1092648--1093222 Score: 666
Period size: 309 Copynumber: 1.9 Consensus size: 310
1092638 AATGAAAATC
* **
1092648 ATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATGGAAAATGGTGGGAA
1 ATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATGGAAAATGGTGCAAA
* ** * * ****
1092713 GAAAAGCCTTTCTTGTGAAACTAAAGCATCAATATCACGTATGCTAATGAGATGATTGTGTTTAT
66 GAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCACACATCCTAATGAGAAGAACAAGTTTAT
* * * *
1092778 GGTGCCTAAT-CTTGAAAAGAATGGAGATTATTATGAGAATCCATA-TTTGTCTTATTT-AACAG
131 GGTGCCCAATGATT-AAAAG-ATGGAGATTATTATGACAATCCA-AGTTTGTCTCATTTGAA-AG
* * *
1092840 TCAAACTTTGATTCTAT-GTAA-TGGTGGTAAA-AAAA-TCTTTTCTTGCAAAGCC-AAACCATC
192 ACAAACTTTGATTCTATGGAAAGTGGTGG-AAAGAAAAGT-TTTTCTTG-AAACCCTAAACCATC
*
1092900 AATGTCATGTATCTGAACGAGGATTTTTGGTGCCCAACCATGAATAGAATGGAAACT
254 AATGTCATATATCTGAACGAGGATTTTTGGTGCCCAACCATGAATAGAATGGAAACT
* * * * *
1092957 ATTACAAGAATCTATGTTTGTCTCATTTGAGGGATGAACTTTGATTTTGA-GGAAAATGG-GTCA
1 ATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ATGGAAAATGGTG-CA
* * * * *
1093020 AAGAAAAGCTTTTCTTTTGAAGCCAAAGCATTAATATCATACATCCTAATGAGAAGAACAAGTTT
64 AAGAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCACACATCCTAATGAGAAGAACAAGTTT
* * * *
1093085 ATGGTGCCCGATGATTAAAAGATGGAGATTGTTTTGACAATTCAAGTTTGTCTCATTTGAAAGAC
129 ATGGTGCCCAATGATTAAAAGATGGAGATTATTATGACAATCCAAGTTTGTCTCATTTGAAAGAC
* * *
1093150 ACACTTTGATTCTATGGAAAGTGGTGGAAAGAAAAGTTTTTCTTGAGACCCTAAAGCATCAATGT
194 AAACTTTGATTCTATGGAAAGTGGTGGAAAGAAAAGTTTTTCTTGAAACCCTAAACCATCAATGT
1093215 CATATATC
259 CATATATC
1093223 CCAATGATGG
Statistics
Matches: 219, Mismatches: 37, Indels: 19
0.80 0.13 0.07
Matches are distributed among these distances:
307 1 0.00
308 48 0.22
309 129 0.59
310 40 0.18
311 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.20, T:0.33
Consensus pattern (310 bp):
ATTACAAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATGGAAAATGGTGCAAA
GAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCACACATCCTAATGAGAAGAACAAGTTTAT
GGTGCCCAATGATTAAAAGATGGAGATTATTATGACAATCCAAGTTTGTCTCATTTGAAAGACAA
ACTTTGATTCTATGGAAAGTGGTGGAAAGAAAAGTTTTTCTTGAAACCCTAAACCATCAATGTCA
TATATCTGAACGAGGATTTTTGGTGCCCAACCATGAATAGAATGGAAACT
Found at i:1094223 original size:159 final size:160
Alignment explanation
Indices: 1093298--1095270 Score: 719
Period size: 159 Copynumber: 12.6 Consensus size: 160
1093288 TACTATGATT
* * * ** *
1093298 TTTAAGGAAAAATGG-GGCAAAGAAAGGCTTTCCTTGC-AAAGCCAAAGTATCAATATCTTGTAT
1 TTTAAGG-AAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
* **
1093361 CCTAATGAGGAGAATAG-GTTTATGGTGCCCAAT-ATTGAAAAGAATGAAGATCATTACTAGAAT
65 CCTAATAAGGAGAAT-GTGTTTATGGTGCCCAATCA-CAAAAAGAATGAAGATCATTACTAGAAT
* *
1093424 CTATGTTTGTCTCATTTGAGGCG-TGAACTTAGAC
128 CCATGTTTGTCTCA-TTGAGG-GATGAACTTTGAC
* * ** * *
1093458 TCTATA-GAAAATAGTGG--AAGAAAAGCTTTTCTTTTGAAA-TCAAAGCATCAATATCATGTAT
1 TTTA-AGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
* * ** ** * *
1093519 CTTAATAAGAAGAATGTGTTTATGGTGCCTTATCTTGAAAAA-AAT-AGGGATTATTA-TGAGAA
65 CCTAATAAGGAGAATGTGTTTATGGTGCCCAATC-ACAAAAAGAATGA-AGATCATTACT-AGAA
* * * *
1093581 TCTATGTTTGTCTCATTTTAGAGATGAACTTTG-G
127 TCCATGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * * * * ** *
1093615 TTCTATGAAAAATGGTGGTTAA-AAAAGCTTTTCTTGTG-AAGCCAAACCACCTGTTTCATGTAT
1 TT-TAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
* * * * *
1093678 CCCAATAA-G-G-AT-T-TTCA--GTGCCCTATCACAAAAAGAATGGAGA-CTATTACAAGAATC
65 CCTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATC-ATTACTAGAATC
* * *
1093735 CATG-TTGTGTCATTTGAGGGACGAACTTT-AA
129 CATGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * * ** * ** **
1093766 TGTGAGGGAAAATAG-GCCAAAGAAAAGCTTTTCTTGC-AAAGTCAAAGAATCAATATTGTGTAT
1 T-TTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
** * * ** *
1093829 TGTAATAAGGAGAATGTGTTTATGGTGCCTAGA-CTC-AAAA-AATGGAA-ATTGTTA-TGAAAA
65 CCTAATAAGGAGAATGTGTTTATGGTGCCCA-ATCACAAAAAGAAT-GAAGATCATTACT-AGAA
* * ** *
1093889 TCC-TCGTTTGTCTCATTTAAGGG-TCAAAC-TCCATT
127 TCCAT-GTTTGTCTCA-TTGAGGGAT-GAACTTTGA-C
** * * * * *
1093924 TTCTATCGAAAATGGTGG-AAAGAAGAGTTTTTCTTAC-AACA-CCAAAGTC-TCAATGTCATGT
1 TT-TAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAA-AGCCAAA-CCATCAATATCATGT
* * ** * * * *
1093985 AT-CTCAATGAA-AAGAACATGT-TTTTTGGTTTCTAATCTCAAAAATAATGGAGA-CTATTA-T
63 ATCCT-AAT-AAGGAG-A-ATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATC-ATTACT
*
1094045 -GTAATCCTTGTTTGTCTCATTGAAGGGATGAACTTTGAC
123 AG-AATCCATGTTTGTCTCATTG-AGGGATGAACTTTGAC
1094084 TTTAAGGAAAATGG-GGTAAAGAAAAGCTTTTCTTGCGAAAG-CAAACCATCAATATCATGTATC
1 TTTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTATC
* * * *
1094147 CTAATGAGGAGAATGTGTTTACGGTGCCCAATAACAAAAAGAATGAAGATCATTACTAGAATTCA
66 CTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACTAGAATCCA
* * *
1094212 TGTTTGTCTCATTTGAGGCACGAACTTAGAC
131 TGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * ** * *
1094243 TTT--GCTAATAGTGGTGG--AAGAAAAGCCTTTTCTTGTTAATTG--AAAGCATCAATATCATG
1 TTTAAG-GAA-AATGGTGGTAAAGAAAAG-CTTTTCTTGCGAA-AGCCAAACCATCAATATCATG
* * *** ** * *
1094302 TATCCTAATAAGAAGAATGTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTATT-TTGAGA
62 TATCCTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACT-AGA
* * * * **
1094366 ATCCTTGTTAGTCTCATTTAAGAGACAAACTTTGA-
126 ATCCATGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * * * *
1094401 TTCTATGAAAAAAGGTGGT-AATAAAAGCTTTTCTTGC-AAAGCCAAACCATCAATGTCATGTAT
1 TT-TAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
* ** * *
1094464 -CTGAAT-A--AGAAT-T-TTTA--GTGCCCAATCACGAAAAGAATGGGGACCATTACAAGAATC
65 CCT-AATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACTAGAATC
* * *
1094521 CTTGTTTGTCTCATTTAAGAGATGAACTTTGA-
129 CATGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * * * * * *
1094553 TTCTATGAAAAATGGTAGTTAAA-AAAA-CTTTTCTTGTG-AAGCCAAACCATTAGTGTCATGTA
1 TT-TAAGGAAAATGGT-GGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTA
* * * ** * * *
1094615 TCCAAATGA-G-GAA----TTT-TGGTGCCCTATCATGACAAGAAT-AGAGACCATTACAAGAAT
64 TCCTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGA-AGATCATTACTAGAAT
* *
1094672 CCATGTTTGCCTCATTTGAGGGATGAACTTTGAT
128 CCATGTTTGTCTCA-TTGAGGGATGAACTTTGAC
* * * * * *
1094706 TTTAAGGAAAAT-GAGCTAAAGAAAAGTTTTTCTTGCG-AAGTCGAACTATCAATATCATGTATC
1 TTTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTATC
* * * * *** * * *
1094769 GTAAAAAGGAGAACGTGTTTATGGTG-CCAAGCTTGAAAAG-ATGGAGATTATTA-TGACAATCC
66 CTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACT-AGAATCC
* * * * * *
1094831 AAGTTTGTCTCATTTAAGGATCAAACTCTAATTC
130 ATGTTTGTCTCATTGAGGGAT-GAACTTTGA--C
* * * * * * ** * *
1094865 TCTCA--AAACTGGTGG-AAAGAAGAG-TTTT-TT--TACA-CCAAATTA-CAATGTCATGTGTC
1 TTTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTATC
* * * * **** * *
1094921 CCAATGAAGG-GAATGTGTTTTTGGTTCCGAATTTTGAAAAGAATGGAGA-CTATTAC-AAAATC
66 CTAAT-AAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATC-ATTACTAGAATC
* ** * * * *
1094983 CTTGTTTACCTCATTAAAAGGATAAACTTTGAT
129 CATGTTTGTCTCATT-GAGGGATGAACTTTGAC
* * * * * * * *
1095016 TTTATGGAAAATGG-GGAAAAGGAAAGCTTTCCTTACAAAAG-CAAACCATAAATTTCATGTATC
1 TTTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTATC
* * * ** * ***
1095079 CTAATGAGGAAAATATGTTTATGGTGCCCAATCATGAAAAGATTGAAGATTGGTACTAGAATCCA
66 CTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACTAGAATCCA
* ** *
1095144 TATTTGTCTCATTTTGAGGCTTGGA-TTTAGAC
131 TGTTTGTCTCA--TTGAGGGATGAACTTT-GAC
* * * * * * * * *
1095176 TCT-ACGAAAA--ATGGCAAGAAAAAAGCCTTTCTTGC-AAAACCAAAGCATCAATATCCTGTAT
1 TTTAAGGAAAATGGTGGTAA-AGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTAT
* * * *
1095237 CCTAATGAGAAGAATGTGTTTATTGTGCCTAATC
65 CCTAATAAGGAGAATGTGTTTATGGTGCCCAATC
1095271 TTGAAAAGGA
Statistics
Matches: 1361, Mismatches: 321, Indels: 263
0.70 0.17 0.14
Matches are distributed among these distances:
150 8 0.01
151 80 0.06
152 271 0.20
153 71 0.05
154 35 0.03
155 8 0.01
156 36 0.03
157 91 0.07
158 289 0.21
159 386 0.28
160 70 0.05
161 16 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (160 bp):
TTTAAGGAAAATGGTGGTAAAGAAAAGCTTTTCTTGCGAAAGCCAAACCATCAATATCATGTATC
CTAATAAGGAGAATGTGTTTATGGTGCCCAATCACAAAAAGAATGAAGATCATTACTAGAATCCA
TGTTTGTCTCATTGAGGGATGAACTTTGAC
Found at i:1095209 original size:932 final size:937
Alignment explanation
Indices: 1093320--1095298 Score: 2286
Period size: 932 Copynumber: 2.1 Consensus size: 937
1093310 TGGGGCAAAG
* * * * * * *
1093320 AAAGGCTTTCCTTGCAAAGCCAAAGTATCAATATCTTGTATCCTAATGAGGAGAATAG-GTTTAT
1 AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAAT-GTGTTTAT
* * * *
1093384 GGTGCCCAATATTGAAAA-GAATGAA-GATCATTACT-AGAAT-CTATGTTTGTCTCATTT--GA
65 GGTGCCTAATCTTGAAAAGGAAT-AAGGATTATTA-TGAGAATCCT-TGTTAGTCTCATTTAAGA
* * * * * * * *
1093443 GGCGTGAACTTAGACTCTATAGAAAATA-GTGG-AAGAAAAGCTTTTCTTTTG-AAA-TCAAAGC
127 GAC--AAACTTTGATTCTAT-GAAAAAAGGTGGTAATAAAAGCTTTTC--TTGCAAAGCCAAACC
* * ** ** * *
1093504 ATCAATATCATGTATCTTAATAAGAAGAATGTGTTTATGGTGCCTTATCTTGAAAAAAATAGGGA
187 ATCAATGTCATGTATCTGAAT---AAGAAT-T-TTTA--GTGCCCAATCACGAAAAGAATGGGGA
** ** * * *
1093569 TTATTATGAGAATCTATGTTTGTCTCATTTTAGAGATGAACTTTGGTTCTATGAAAAATGGTGGT
245 CCATTACAAGAATCTATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTAGT
* * *
1093634 TAAAAAAGCTTTTCTTGTGAAGCCAAACCACCTGTTTCATGTATCCCAATAAGGATTTTCAGTGC
310 TAAAAAAACTTTTCTTGTGAAGCCAAACCACCTGTGTCATGTATCCAAATAAGGATTTTCAGTGC
* *
1093699 CCTATCACAAAAAGAATGGAGACTATTACAAGAATCCATGTTGTGTCATTTGAGGGACGAACTTT
375 CCTATCACAAAAAGAATAGAGACCATTACAAGAATCCATGTTGTGTCATTTGAGGGACGAACTTT
* * **
1093764 AATGTGAGGGAAAATAGGCCAAAGAAAAGCTTTTCTTGCAAAGTCAAAGAATCAATATTGTGTAT
440 AATGTGAAGGAAAATAGGCCAAAGAAAAGCTTTTCTTGCAAAGTCAAACAATCAATATCATGTAT
* * * * * **
1093829 TGTAATAAGGAGAATGTGTTTATGGTGCCTAGACTCAAAAAATGGAAATTGTTATGAAAATCCTC
505 CGTAAAAAGGAGAACGTGTTTATGGTGCCAAGACTCAAAAAATGGAAATTATTATGAAAATCCAA
* *
1093894 GTTTGTCTCATTTAAGGGTCAAACTCCATTTTCTATCGAAAATGGTGGAAAGAAGAGTTTTTCTT
570 GTTTGTCTCATTTAAGGATCAAACTCCATATTCTATCGAAAATGGTGGAAAGAAGAGTTTTTCTT
* * *
1093959 ACAACACCAAAGTCTCAATGTCATGTATCTCAATGAAAAGAACATGTTTTTTGGTTTCTAATCTC
635 --AACACCAAAGTCTCAATGTCATGTATCCCAATGAAAAGAACATGTTTTTTGGTTCCGAATCTC
* *** ** * * *
1094024 AAAAATAATGGAGACTATTATGTAATCCTTGTTTGTCTCATTGAAGGGATGAACTTTGACTTTAA
698 AAAAAGAATGGAGACTATTACAAAATCCTTGTTTACCTCATTAAAAGGATAAACTTTGACTTTAA
* * * * *
1094089 GGAAAATGGGGTAAAGAAAAGCTTTTCTTGCGAAAGCAAACCATCAATATCATGTATCCTAATGA
763 GGAAAATGGGGAAAAGAAAAGCTTTCCTTACAAAAGCAAACCATAAATATCATGTATCCTAATGA
* * * * *
1094154 GGAGAATGTGTTTACGGTGCCCAATAACAAAAAGAATGAAGATCATTACTAGAATTCATGTTTGT
828 GGAAAATATGTTTACGGTGCCCAATAACAAAAAGAATGAAGATCAGTACTAGAATCCATATTTGT
* * * * * **
1094219 CTCATTTGAGGCACGAACTTAGACTTTGCTAATAGTGGTGGAAGA
893 CTCATTTGAGGCACGAACTTAGACTCTACGAAAAATGGAAGAAGA
** ***
1094264 AAAGCCTTTTCTTGTTAATTGAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATG
1 AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATG
** *
1094329 GTGCCTAATCTTGAAAA-GAATGGGGATTATTTTGAGAATCCTTGTTAGTCTCATTTAAGAGACA
66 GTGCCTAATCTTGAAAAGGAATAAGGATTATTATGAGAATCCTTGTTAGTCTCATTTAAGAGACA
1094393 AACTTTGATTCTATGAAAAAAGGTGGTAATAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTC
131 AACTTTGATTCTATGAAAAAAGGTGGTAATAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTC
1094458 ATGTATCTGAATAAGAATTTTTAGTGCCCAATCACGAAAAGAATGGGGACCATTACAAGAATCCT
196 ATGTATCTGAATAAGAATTTTTAGTGCCCAATCACGAAAAGAATGGGGACCATTACAAGAAT-CT
1094523 -TGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTAGTTAAAAAAACTTTTCT
260 ATGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTAGTTAAAAAAACTTTTCT
* * * ** *
1094587 TGTGAAGCCAAACCA-TTAGTGTCATGTATCCAAATGAGGAATTTT-GGTGCCCTATCATGACAA
325 TGTGAAGCCAAACCACCT-GTGTCATGTATCCAAATAAGG-ATTTTCAGTGCCCTATCACAAAAA
* * * *
1094650 GAATAGAGACCATTACAAGAATCCATGTT-TGCCTCATTTGAGGGATGAACTTTGATTTTAAGGA
388 GAATAGAGACCATTACAAGAATCCATGTTGTG--TCATTTGAGGGACGAACTTTAATGTGAAGGA
* * * * *
1094714 AAAT-GAGCTAAAGAAAAGTTTTTCTTGCGAAGTCGAACTATCAATATCATGTATCGTAAAAAGG
451 AAATAG-GCCAAAGAAAAGCTTTTCTTGCAAAGTCAAACAATCAATATCATGTATCGTAAAAAGG
* * * *
1094778 AGAACGTGTTTATGGTGCCAAG-CTTGAAAAGATGGAGATTATTATGACAATCCAAGTTTGTCTC
515 AGAACGTGTTTATGGTGCCAAGAC-TCAAAAAATGGAAATTATTATGAAAATCCAAGTTTGTCTC
* *
1094842 ATTTAAGGATCAAACTCTA-ATTCTCTC-AAAACTGGTGGAAAGAAGAGTTTTT-TT-ACACCAA
579 ATTTAAGGATCAAACTCCATATTCTATCGAAAA-TGGTGGAAAGAAGAGTTTTTCTTAACACCAA
* * * * **
1094903 A-T-TACAATGTCATGTGTCCCAATG-AAGGGA-ATGTGTTTTTGGTTCCGAATTTTGAAAAGAA
643 AGTCT-CAATGTCATGTATCCCAATGAAAAGAACATGT-TTTTTGGTTCCGAATCTCAAAAAGAA
* *
1094964 TGGAGACTATTACAAAATCCTTGTTTACCTCATTAAAAGGATAAACTTTGATTTTATGGAAAATG
706 TGGAGACTATTACAAAATCCTTGTTTACCTCATTAAAAGGATAAACTTTGACTTTAAGGAAAATG
* *
1095029 GGGAAAAGGAAAGCTTTCCTTACAAAAGCAAACCATAAATTTCATGTATCCTAATGAGGAAAATA
771 GGGAAAAGAAAAGCTTTCCTTACAAAAGCAAACCATAAATATCATGTATCCTAATGAGGAAAATA
* * ** * **
1095094 TGTTTATGGTGCCCAATCATGAAAAGATTGAAGATTGGTACTAGAATCCATATTTGTCTCATTTT
836 TGTTTACGGTGCCCAATAACAAAAAGAATGAAGATCAGTACTAGAATCCATATTTGTCTCA-TTT
** * *
1095159 GAGGCTTGGATTTAGACTCTACGAAAAATGGCAAGAA-A
900 GAGGCACGAACTTAGACTCTACGAAAAATGG-AAGAAGA
* * *
1095197 AAAGCC-TTTCTTGCAAAACCAAAGCATCAATATCCTGTATCCTAATGAGAAGAATGTGTTTATT
1 AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATG
1095261 GTGCCTAATCTTGAAAAGGAATAAGGATTATTATGAGA
66 GTGCCTAATCTTGAAAAGGAATAAGGATTATTATGAGA
1095299 GAATTGGAAA
Statistics
Matches: 871, Mismatches: 141, Indels: 57
0.81 0.13 0.05
Matches are distributed among these distances:
931 4 0.00
932 254 0.29
933 68 0.08
934 11 0.01
937 9 0.01
938 191 0.22
939 155 0.18
940 4 0.00
941 1 0.00
942 6 0.01
943 11 0.01
944 114 0.13
945 39 0.04
946 4 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (937 bp):
AAAGCCTTTTCTTGCAAAACCAAAGCATCAATATCATGTATCCTAATAAGAAGAATGTGTTTATG
GTGCCTAATCTTGAAAAGGAATAAGGATTATTATGAGAATCCTTGTTAGTCTCATTTAAGAGACA
AACTTTGATTCTATGAAAAAAGGTGGTAATAAAAGCTTTTCTTGCAAAGCCAAACCATCAATGTC
ATGTATCTGAATAAGAATTTTTAGTGCCCAATCACGAAAAGAATGGGGACCATTACAAGAATCTA
TGTTTGTCTCATTTAAGAGATGAACTTTGATTCTATGAAAAATGGTAGTTAAAAAAACTTTTCTT
GTGAAGCCAAACCACCTGTGTCATGTATCCAAATAAGGATTTTCAGTGCCCTATCACAAAAAGAA
TAGAGACCATTACAAGAATCCATGTTGTGTCATTTGAGGGACGAACTTTAATGTGAAGGAAAATA
GGCCAAAGAAAAGCTTTTCTTGCAAAGTCAAACAATCAATATCATGTATCGTAAAAAGGAGAACG
TGTTTATGGTGCCAAGACTCAAAAAATGGAAATTATTATGAAAATCCAAGTTTGTCTCATTTAAG
GATCAAACTCCATATTCTATCGAAAATGGTGGAAAGAAGAGTTTTTCTTAACACCAAAGTCTCAA
TGTCATGTATCCCAATGAAAAGAACATGTTTTTTGGTTCCGAATCTCAAAAAGAATGGAGACTAT
TACAAAATCCTTGTTTACCTCATTAAAAGGATAAACTTTGACTTTAAGGAAAATGGGGAAAAGAA
AAGCTTTCCTTACAAAAGCAAACCATAAATATCATGTATCCTAATGAGGAAAATATGTTTACGGT
GCCCAATAACAAAAAGAATGAAGATCAGTACTAGAATCCATATTTGTCTCATTTGAGGCACGAAC
TTAGACTCTACGAAAAATGGAAGAAGA
Found at i:1099797 original size:13 final size:13
Alignment explanation
Indices: 1099779--1099805 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1099769 CAAAGAATAG
1099779 TGTATCGATACAT
1 TGTATCGATACAT
1099792 TGTATCGATACAT
1 TGTATCGATACAT
1099805 T
1 T
1099806 TAAGTAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1099882 original size:32 final size:33
Alignment explanation
Indices: 1099841--1099909 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
1099831 GGCAGTAGCT
1099841 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
1099873 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
1099906 TACA
1 TACA
1099910 AATTGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:1099883 original size:13 final size:13
Alignment explanation
Indices: 1099865--1099889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1099855 ACAAAACTTA
1099865 TGTATCGATACAT
1 TGTATCGATACAT
1099878 TGTATCGATACA
1 TGTATCGATACA
1099890 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1100790 original size:98 final size:92
Alignment explanation
Indices: 1100650--1100915 Score: 388
Period size: 98 Copynumber: 2.8 Consensus size: 92
1100640 CGAAGAATGA
* * * *
1100650 CAATGTGCTGCTTCATGGCCAGCGACATTGATCTTAAAGATGACGGTGCCAATATGCTGATTCAA
1 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
1100715 AGCCAGCGATACCGGACTTAAAGATGAATATGC
66 AGCCAGCGATACCGGACTTAAAG--G----TGC
1100748 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
1 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
*
1100813 AGCCAGTGATACCGGACTTAAAGGTGC
66 AGCCAGCGATACCGGACTTAAAGGTGC
* * * *
1100840 CAATGTGTTGGTTCAAGGCCAGTGACATTGGACTTAAAGATGACGGTGCCAATATGCGGATTCAA
1 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
*
1100905 GGCCAGCGATA
66 AGCCAGCGATA
1100916 TTGGATTTAG
Statistics
Matches: 157, Mismatches: 11, Indels: 6
0.90 0.06 0.03
Matches are distributed among these distances:
92 73 0.46
96 1 0.01
98 83 0.53
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (92 bp):
CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
AGCCAGCGATACCGGACTTAAAGGTGC
Found at i:1100919 original size:49 final size:49
Alignment explanation
Indices: 1100650--1100920 Score: 268
Period size: 49 Copynumber: 5.7 Consensus size: 49
1100640 CGAAGAATGA
* * *
1100650 CAATGTGCTGCTTCATGGCCAGCGACATT-GATCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGA-CTTAAAGATGACGGTGC
* * ** ***
1100699 CAATATGCTGATTCAAAGCCAGCGATACCGGACTTAAAGATGAATATGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
* * *
1100748 CAATGTGTTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
* * * **
1100797 CAATATGCTGATTCAAAGCCAGTGATACCGGACTT--A-A--A-GGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
* * * *
1100840 CAATGTGTTGGTTCAAGGCCAGTGACATTGGACTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
* *
1100889 CAATATGCGGATTCAAGGCCAGCGATATTGGA
1 CAATATGCTGATTCAAGGCCAGCGACATTGGA
1100921 TTTAGAAAAA
Statistics
Matches: 174, Mismatches: 41, Indels: 14
0.76 0.18 0.06
Matches are distributed among these distances:
43 33 0.19
44 1 0.01
45 1 0.01
46 2 0.01
47 1 0.01
48 1 0.01
49 133 0.76
50 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
Found at i:1100986 original size:28 final size:28
Alignment explanation
Indices: 1100946--1101076 Score: 174
Period size: 28 Copynumber: 4.6 Consensus size: 28
1100936 CACCAACTTG
1100946 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
1100974 TGTGGGCTTTTGAAAAGATGCCACTAACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
1101003 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
1101031 TATGGGC-TTTGAAAAAGGGTGCCACTGACT
1 TGTGGGCTTTTG---AAGGTTGCCACTGACT
1101061 TGTGGGCTTTTGAAGG
1 TGTGGGCTTTTGAAGG
1101077 GTGAGGAATA
Statistics
Matches: 89, Mismatches: 9, Indels: 10
0.82 0.08 0.09
Matches are distributed among these distances:
27 4 0.04
28 35 0.39
29 25 0.28
30 21 0.24
31 4 0.04
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:1101022 original size:57 final size:57
Alignment explanation
Indices: 1100925--1101076 Score: 225
Period size: 57 Copynumber: 2.6 Consensus size: 57
1100915 ATTGGATTTA
* *
1100925 GAAAAAGATGCCACCAACTTGTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAAGATGCCACTAAC-T-TGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGC-TTT
1100985 G-AAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTT
1 GAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTT
* *
1101041 GAAAAAGGGTGCCACTGACTTGTGGGCTTTTGAAGG
1 GAAAAA-GATGCCACTAACTTGTGGGCTTTTGAAGG
1101077 GTGAGGAATA
Statistics
Matches: 86, Mismatches: 4, Indels: 6
0.90 0.04 0.06
Matches are distributed among these distances:
56 4 0.05
57 38 0.44
58 28 0.33
59 15 0.17
60 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.30
Consensus pattern (57 bp):
GAAAAAGATGCCACTAACTTGTGGGCTTTTGAAGGTTGCCACTGACTTATGGGCTTT
Found at i:1102539 original size:13 final size:13
Alignment explanation
Indices: 1102511--1102590 Score: 83
Period size: 14 Copynumber: 6.1 Consensus size: 13
1102501 CCGGACCCTT
* *
1102511 TTTGTTGTTGTTG
1 TTTGTTTTTTTTG
1102524 TTT-TTTTTGTTTG
1 TTTGTTTTT-TTTG
*
1102537 TTTGTTTTTTTGTT
1 TTTGTTTTTTT-TG
*
1102551 TTTGTTTTTTGTTT
1 TTTGTTTTTT-TTG
1102565 TTTGTTTTTTTT-
1 TTTGTTTTTTTTG
1102577 TTTGTTTTTTTTG
1 TTTGTTTTTTTTG
1102590 T
1 T
1102591 GGAGGACGCC
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
12 16 0.27
13 14 0.24
14 28 0.47
15 1 0.02
ACGTcount: A:0.00, C:0.00, G:0.16, T:0.84
Consensus pattern (13 bp):
TTTGTTTTTTTTG
Found at i:1102548 original size:12 final size:12
Alignment explanation
Indices: 1102525--1102588 Score: 71
Period size: 12 Copynumber: 5.4 Consensus size: 12
1102515 TTGTTGTTGT
1102525 TTTTTTTGTTTG
1 TTTTTTTGTTTG
1102537 TTTGTTTT-TTTG
1 TTT-TTTTGTTTG
*
1102549 TTTTTGTTTTTTG
1 TTTTT-TTGTTTG
*
1102562 -TTTTTTGTTTT
1 TTTTTTTGTTTG
1102573 TTTTTTTGTTT-
1 TTTTTTTGTTTG
1102584 TTTTT
1 TTTTT
1102589 GTGGAGGACG
Statistics
Matches: 46, Mismatches: 2, Indels: 9
0.81 0.04 0.16
Matches are distributed among these distances:
11 12 0.26
12 26 0.57
13 8 0.17
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (12 bp):
TTTTTTTGTTTG
Found at i:1102558 original size:28 final size:27
Alignment explanation
Indices: 1102518--1102590 Score: 91
Period size: 27 Copynumber: 2.7 Consensus size: 27
1102508 CTTTTTGTTG
1102518 TTGTTGTTT-TTTTTGTTTGTTTGTTTTT
1 TTGTT-TTTGTTTTTGTTTGTTTG-TTTT
1102546 TTGTTTTTGTTTTTTGTTT-TTTGTTTT
1 TTGTTTTTG-TTTTTGTTTGTTTGTTTT
1102573 TT-TTTTTGTTTTT-TTTGT
1 TTGTTTTTGTTTTTGTTTGT
1102591 GGAGGACGCC
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
24 3 0.07
25 6 0.14
26 6 0.14
27 9 0.21
28 9 0.21
29 9 0.21
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (27 bp):
TTGTTTTTGTTTTTGTTTGTTTGTTTT
Found at i:1102559 original size:7 final size:7
Alignment explanation
Indices: 1102526--1102586 Score: 83
Period size: 7 Copynumber: 8.9 Consensus size: 7
1102516 TGTTGTTGTT
1102526 TTTTTTG
1 TTTTTTG
1102533 TTTGTTTG
1 TTT-TTTG
1102541 TTTTTT-
1 TTTTTTG
1102547 TGTTTTTG
1 T-TTTTTG
1102555 TTTTTTG
1 TTTTTTG
1102562 TTTTTTG
1 TTTTTTG
1102569 -TTTTT-
1 TTTTTTG
1102574 TTTTTTG
1 TTTTTTG
1102581 TTTTTT
1 TTTTTT
1102587 TTGTGGAGGA
Statistics
Matches: 49, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
6 11 0.22
7 30 0.61
8 8 0.16
ACGTcount: A:0.00, C:0.00, G:0.13, T:0.87
Consensus pattern (7 bp):
TTTTTTG
Found at i:1102605 original size:1 final size:1
Alignment explanation
Indices: 1102524--1102588 Score: 58
Period size: 1 Copynumber: 65.0 Consensus size: 1
1102514 GTTGTTGTTG
* * * * * * * *
1102524 TTTTTTTTGTTTGTTTGTTTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTTTTTTGTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1102589 GTGGAGGACG
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (1 bp):
T
Found at i:1116471 original size:20 final size:21
Alignment explanation
Indices: 1116430--1116483 Score: 92
Period size: 20 Copynumber: 2.6 Consensus size: 21
1116420 TTTGCCTGCA
*
1116430 TGTATTGATACATTTCTATAG
1 TGTATCGATACATTTCTATAG
1116451 TGTATCGATACATTT-TATAG
1 TGTATCGATACATTTCTATAG
1116471 TGTATCGATACAT
1 TGTATCGATACAT
1116484 CTGGGCAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
20 18 0.56
21 14 0.44
ACGTcount: A:0.30, C:0.11, G:0.15, T:0.44
Consensus pattern (21 bp):
TGTATCGATACATTTCTATAG
Found at i:1116541 original size:13 final size:13
Alignment explanation
Indices: 1116523--1116547 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1116513 CAAAGATCAG
1116523 TGTATCGATACAA
1 TGTATCGATACAA
1116536 TGTATCGATACA
1 TGTATCGATACA
1116548 TTTAAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1116614 original size:19 final size:19
Alignment explanation
Indices: 1116590--1116706 Score: 114
Period size: 20 Copynumber: 6.7 Consensus size: 19
1116580 TAGCTTACAT
*
1116590 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
1116609 TGTATCGAT-----ACTT-
1 TGTATCGATACAACACTTA
1116622 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
*
1116641 TGTATC-A-A-TACA--T-
1 TGTATCGATACAACACTTA
1116654 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
1116674 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
1116694 TGTATCGATACAA
1 TGTATCGATACAA
1116707 ATTGTTGAAA
Statistics
Matches: 83, Mismatches: 2, Indels: 25
0.75 0.02 0.23
Matches are distributed among these distances:
13 15 0.18
14 6 0.07
15 1 0.01
16 6 0.07
17 1 0.01
18 5 0.06
19 16 0.19
20 33 0.40
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:1116627 original size:13 final size:14
Alignment explanation
Indices: 1116604--1116632 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
1116594 TCGATACAAA
1116604 ACTTATGTATCGAT
1 ACTTATGTATCGAT
1116618 ACTT-TGTATCGAT
1 ACTTATGTATCGAT
1116631 AC
1 AC
1116633 AACACTTATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.41
Consensus pattern (14 bp):
ACTTATGTATCGAT
Found at i:1116628 original size:32 final size:32
Alignment explanation
Indices: 1116585--1116685 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
1116575 GGTAGTAGCT
*
1116585 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
* *
1116617 TACTTTGTATCGATACAACACTTATGTATCAA
1 TACATTGTATCGATACAACACTTATGTATCGA
1116649 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
1116682 TACA
1 TACA
1116686 ACACTTTATG
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
32 49 0.78
33 14 0.22
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:1117961 original size:19 final size:19
Alignment explanation
Indices: 1117937--1117974 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
1117927 AAGAGCTTTT
1117937 CTTGTAAAGCAAAGCCTCA
1 CTTGTAAAGCAAAGCCTCA
*
1117956 CTTGTAAAGCGAAGCCTCA
1 CTTGTAAAGCAAAGCCTCA
1117975 ATATCGATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.21
Consensus pattern (19 bp):
CTTGTAAAGCAAAGCCTCA
Found at i:1119207 original size:17 final size:18
Alignment explanation
Indices: 1119185--1119221 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
1119175 TGTTTAAAGA
1119185 ACAAA-GAAGAAATTCTC
1 ACAAAGGAAGAAATTCTC
1119202 ACAAAGTGAAGAAATTCTC
1 ACAAAG-GAAGAAATTCTC
1119221 A
1 A
1119222 AGATATTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.28
19 13 0.72
ACGTcount: A:0.51, C:0.16, G:0.14, T:0.19
Consensus pattern (18 bp):
ACAAAGGAAGAAATTCTC
Found at i:1124190 original size:153 final size:153
Alignment explanation
Indices: 1124009--1124289 Score: 329
Period size: 153 Copynumber: 1.8 Consensus size: 153
1123999 TACAAGAATC
* * * *
1124009 TATGTTTATCTCATTTAAGGGACAAACTT-TGATTTTAAGCTAAATAGG-GCAAAAAAAAG-CTT
1 TATGTTTATCTCATTTAAGGCACAAACTTATG-CTCTAAG-AAAAT-GGTGCAAAAAAAAGCCTT
* * * *
1124071 TCTTTGAGAAAGCAAATCATCAATATCTTGTA-TCTAATAAGGAA-AACGTGTTTATGGTGCCTA
63 TCTTTCA-AAACCAAAGCATCAATATCGTGTATTCTAATAA-GAAGAACGTGTTTATGGTGCCTA
1124134 ATCCTAAAAGGAATGAAGATCATTACTA
126 ATCCTAAAAGGAATGAAGATCATTACTA
* ** * ** *
1124162 TATGTTTATCTCATTTGAGGCATGAACTTATGCTCTACGAAAATGGTGGGAAGAAAAGCCTTTCT
1 TATGTTTATCTCATTTAAGGCACAAACTTATGCTCTAAGAAAATGGTGCAAAAAAAAGCCTTTCT
* *
1124227 TTCAAAACCAAAGCATCAATATCGTGTATTCTAATGAGAAGAATGTGTTTATGGTGCCTAATC
66 TTCAAAACCAAAGCATCAATATCGTGTATTCTAATAAGAAGAACGTGTTTATGGTGCCTAATC
1124290 TTGAAAAGAA
Statistics
Matches: 106, Mismatches: 17, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
151 2 0.02
152 36 0.34
153 66 0.62
154 2 0.02
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (153 bp):
TATGTTTATCTCATTTAAGGCACAAACTTATGCTCTAAGAAAATGGTGCAAAAAAAAGCCTTTCT
TTCAAAACCAAAGCATCAATATCGTGTATTCTAATAAGAAGAACGTGTTTATGGTGCCTAATCCT
AAAAGGAATGAAGATCATTACTA
Found at i:1126411 original size:157 final size:156
Alignment explanation
Indices: 1125350--1128173 Score: 1066
Period size: 158 Copynumber: 18.1 Consensus size: 156
1125340 TGTCCAATTA
* * * *
1125350 TGAAAAG-ATGGA-ATTGTTACGAAAATCCATGTTTGTCTTATTTGA-GGATGAACTTTGATTCT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT-T
** * * * * * * * *
1125412 ATCAAAAATGATGG-AAACAAAAGTTTTTCTTGCGATA-CCAAGCATCAATGTCATGTATCCCAA
65 ATGGAAAATG-GGGCAAAGAAAAGCTTTTCTTG-AAAAGCAAAGCATCAATATCATGTATCCTAA
* * *
1125475 TGAAGGGAATGTGATTT-TGGTCCCCAATCT
128 T-AAAGGAATGTG-TTTATGGTGCCTAATCT
* * * * * * *
1125505 CGAAAAGAATGGAGACTATTATGAGAATCCATGTATGTCTCATCTAAGGGATAAACTTTAATTTT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTT
* * * * * * *
1125570 AAGGAAAATAGGGCAAAGAAAAGCTTTCCTT-ATGAAAGGAAATCATCAATATCCTATATCCTAA
65 ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTGA--AAAGCAAAGCATCAATATCATGTATCCTAA
* * ** **
1125634 TGAAGGGGATGTGTTTATGAAGCCTAATAA
128 T-AAAGGAATGTGTTTATGGTGCCTAATCT
* * * *
1125664 TGAAAAGAATGAAGA-TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTT
1 TGAAAAGAATGGAGACT-ATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TT
* * * * * *
1125728 TGTGAAAAATGGTGG--AAGAAAAGCCTTTCTTGTGAAAA-CAAAGCATCAAGATCATATATTCT
64 TATGGAAAATGG-GGCAAAGAAAAGCTTTTC-T-TGAAAAGCAAAGCATCAATATCATGTATCCT
* * *
1125790 AA-AGAGAAGAATGTGTTTATGGTGCGTGATCT
126 AATA-A-AGGAATGTGTTTATGGTGCCTAATCT
* * ** * * *
1125822 TG-AAAGAAATGGGGATTATTGTGAG-ATCCACGTATGTCTCATTT-AGGAGATGAACTTTTATT
1 TGAAAAG-AATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGG-GATGAACTTTGATT
* * * * *
1125884 CTAT-GAAATATGGCGGTAAA-AAGAA-CATTTTCTTGAAATGAAAACCATCAATGTCATGTATC
64 -TATGGAAA-ATGG-GGCAAAGAA-AAGC-TTTTCTTGAAAAGCAAAGCATCAATATCATGTATC
* * * *
1125946 CCAAT-GAGG-A----TTT-TGGTGTCTAATCG
124 CTAATAAAGGAATGTGTTTATGGTGCCTAATCT
* * *
1125972 CGAAAAGAATGGAGAC---TAC-ATGAATCCATGTTTGTCTCATTTGAAGGTTGAACTTTGATTT
1 TGAAAAGAATGGAGACTATTACGA-GAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATTT
** * *** *
1126033 -TGAGTAAAATGGCTCAAAGAAAAGCTTTTCTTGAGAAGCCAAAGCATCAATATCGCATATCCCA
65 ATG-G-AAAATGGGGCAAAGAAAAGCTTTTCTTGAAAAG-CAAAGCATCAATATCATGTATCCTA
* * * *
1126097 AT-GAGGAAAATGAGTTTACGGTGCCCAATCT
127 ATAAAGG--AATGTGTTTATGGTGCCTAATCT
* * * * * **
1126128 TGAAAAG-ATGGAGATTGTTATGATAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTGATTTT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTT
** *** * * * *
1126192 ATCAAAAATGGCAAAAAGAAAAG-TTTTCTTGAGATAG-AAAGCATCAATGTCACGTATTCTAAT
65 ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTGA-AAAGCAAAGCATCAATATCATGTATCCTAAT
* * * *
1126255 AAAAGGAATGTGTTTTTGATTCCAAATCT
129 -AAAGGAATGTGTTTATGGTGCCTAATCT
* * *
1126284 TGAAAAGTATGGAGACTATTACGAGAATCCGTGTTGGTCTCATTT-AGGGGATGAACTTTGATTT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGA-GGGATGAACTTTGATTT
**
1126348 -TGGAAAATGGGGCAAAGAAAAGCTTTTCTTGCAAAAGCAAATAATCAATATCATGTATCCTAAT
65 ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTG-AAAAGCAAAGCATCAATATCATGTATCCTAAT
* ** *
1126412 -GAGCAGAACATGTTTATGGTGTCC-AATCA
129 AAAG--GAATGTGTTTATGGTG-CCTAATCT
* * * * * * * *
1126441 TGAAAAGAATGAAGATTGTTACTAGAATCCATATTTATCTCATTTGA-GGAAGAA-TTTAGACTC
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTT-GA-TT
*** * * * *
1126504 TACAAAAAATGGAGG-AAAGAAAGTGTTTATGATGCCTAATTAGAAACCAAAGCATCAATATCAT
64 TATGGAAAATGG-GGCAAAGAAA-AGCTT-T--T--CT--TGA-AAAGCAAAGCATCAATATCAT
* *
1126568 GTATCCTAATTAGAA-GAAAGTGTTTATGATGCCTAATCT
119 GTATCCTAA-TA-AAGGAATGTGTTTATGGTGCCTAATCT
* * * * *
1126607 TG-AAAGAAATGGGGATTATTATGAGAATCCATGTTTTTCTTATTT-AGGGGATGAACTTTGATT
1 TGAAAAG-AATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGA-GGGATGAACTTTGATT
* * * * * * * *
1126670 CTATGAAAAATGGTGGTAAA-AAAAGCTTTTCTTGAAATGAAAACCATCAATGTCATGCATCCCA
64 -TATGGAAAATGG-GGCAAAGAAAAGCTTTTCTTGAAAAGCAAAGCATCAATATCATGTATCCTA
*
1126734 AT-GAGG-A---GTTT-TGGTGTCC-AAT-T
127 ATAAAGGAATGTGTTTATGGTG-CCTAATCT
* * * *
1126757 ATGAAAAGAATGGAGAC---TAC-ATG-A---AT-TTTGTTTTATTTGAGGGTTTAACTTTGATT
1 -TGAAAAGAATGGAGACTATTACGA-GAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT
* * * * * * *
1126813 TCAAGGGAAATAGGTCAAAGAAAA-CTTTTCTTGCAAAGCCAAAGCATCAATATCACGTATCCAA
64 T-ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTGAAAAG-CAAAGCATCAATATCATGTATCCTA
* * * * *
1126877 ATGAGGAGAATATGTTGATGGTGCCCAATCT
127 ATAAAG-GAATGTGTTTATGGTGCCTAATCT
* * * * * * **
1126908 TAAAAAG-ATGGAGATTGTTACGACAATCCAAGTTTATCTCATTTGAGGGAAAAACTTTGATTTT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TTT
** ** * * * * * * * **
1126972 ATAAAAAATGTTG-AAA-AAAAGTTTTTTTTGTGACACCAAAGCATCAATGTCATATATTTTAAT
65 ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTG-AAAAGCAAAGCATCAATATCATGTATCCTAAT
* * * * *
1127035 GAAGGAAATGCGTTTTTGGTTCCCAAT-T
129 AAAGG-AATGTGTTTATGGTGCCTAATCT
* * * * *
1127063 TCGAAAAGTAA-GGAGACTATAATGAGAATCCATGTTGGTCTTATTTAAGGGATGAACTTTGATT
1 T-GAAAAG-AATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT
* * * *
1127127 T-TGG---A------AAA-AACA-CTTTCCTTGCGAAAGCAAATCATCATATCATCAATATCATG
64 TATGGAAAATGGGGCAAAGAAAAGCTTTTCTT--G--A--AAAGCA--A-AGCATCAATATCATG
* * * * **
1127180 CATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATAA
120 TATCCTAATAAAG-GAATGTGTTTATGGTGCCTAATCT
** * * * * * * *
1127218 CAAAAAAAATGAAGA-TCATTACTAGAATCTATG-TT-TCTCATTTGAGGAATGAACTTAGACTC
1 TGAAAAGAATGGAGACT-ATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TT
* * * ** * * * * * *
1127280 TACGAAAAATGGTGG--AGGAAAAGCCATTCTTCCAAGACCTAAGCATCAACATCATGTATCTTA
64 TATGGAAAATGG-GGCAAAGAAAAGCTTTTCTT-GAAAAGCAAAGCATCAATATCATGTATCCTA
** * *
1127343 ATTAAAAAAAATGTCTTTATGGTGCCTAAT-A
127 A-T-AAAGGAATGTGTTTATGGTGCCTAATCT
* ** * * ** * * * *
1127374 TGATAAGAATAGG-GACTCCTATGAGAATCTATACTTGTATCATTTAAGAGATGAATTTTGATTC
1 TGAAAAGAAT-GGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT-
** * * * * ** *
1127438 TATAAAAAAAATGGTGGTGAAA-AAAAGC-TTTCTTGTAAAGTAAAACCATCAATATCACATAAC
64 TAT--GGAAAATGG-GG-CAAAGAAAAGCTTTTCTTGAAAAG-CAAAGCATCAATATCATGTATC
* * * *
1127501 TTAAT-GAGG-A--T-TTT-TGGTGCCCAATCA
124 CTAATAAAGGAATGTGTTTATGGTGCCTAATCT
** *
1127528 TGAAAAGAATGGAGACTATTAC-AGGAATCCATGTTCATCTTATTTGAGGGATGAACTTTGATTT
1 TGAAAAGAATGGAGACTATTACGA-GAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TT
** * * * * *
1127592 TAAAGAAAATAGGGCAGAG-AAAGCTTTCCTTGCAAAAGCAAATCATCAATATCATGTATTCTAA
64 TATGGAAAATGGGGCAAAGAAAAGCTTTTCTTG-AAAAGCAAAGCATCAATATCATGTATCCTAA
* * *
1127656 TGAGAA-AAAGGTGTTTATGGTGGCTAATCT
128 T-A-AAGGAATGTGTTTATGGTGCCTAATCT
* * * * **
1127686 TGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCT
1 TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATT-T
** * * * * * * * * *
1127751 ATCTAAAATGGTGAAACAAAAAAGTTTTTCTTGAGAGACCAAAGCATCATTGTCATGTATCCCAA
65 ATGGAAAATGGGGCAA-AGAAAAGCTTTTCTTGA-AAAGCAAAGCATCAATATCATGTATCCTAA
* ** * *
1127816 TGAAGCGAACATGTTTTTGGTTCCTAATCT
128 TAAAG-GAATGTGTTTATGGTGCCTAATCT
** * * * * **
1127846 TGAAAAGAATTAAGACAATTA-TAGGAATCCTTGTTTGTCTCATTTAATAGATGAACTTTGATTT
1 TGAAAAGAATGGAGACTATTACGA-GAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATTT
* ** * * * * * *
1127910 AAGGAAAATAAGGAAAAGAAAGGCTTTCCTTGAGAAAGTAAACCATCAATATCATTTATCCTAAT
65 ATGGAAAATGGGGCAAAGAAAAGCTTTTCTTGA-AAAGCAAAGCATCAATATCATGTATCCTAAT
** * *
1127975 GAGAA-GAACATGTTTATGATGCAC-AATCA
129 -A-AAGGAATGTGTTTATGGTGC-CTAATCT
* * * * * * *
1128004 TGAAAAGAATGAAGA-TCATTACTACAATCCATATTTGTCTCATTTGAGGGAAGAACTTAGACTC
1 TGAAAAGAATGGAGACT-ATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGA-TT
*** * * * * ** * *
1128068 TACAAAAAAAT-GGTCAGACAAAATGCCTTTCTTGCGAAGCCAAAGCATCAATATCATGTAGCAT
64 TA-TGGAAAATGGGGCAAAGAAAA-GCTTTTCTTGAAAAG-CAAAGCATCAATATCATGTATCCT
*
1128132 AATAAAAAGAATGTGTTTATGGTGCCTAATCT
126 AAT-AAAGGAATGTGTTTATGGTGCCTAATCT
1128164 TGAAAAGAAT
1 TGAAAAGAAT
1128174 AAGGATTAAC
Statistics
Matches: 1955, Mismatches: 522, Indels: 379
0.68 0.18 0.13
Matches are distributed among these distances:
142 17 0.01
143 56 0.03
144 4 0.00
145 1 0.00
146 8 0.00
147 27 0.01
148 66 0.03
149 17 0.01
150 39 0.02
151 57 0.03
152 45 0.02
153 22 0.01
154 107 0.05
155 53 0.03
156 199 0.10
157 299 0.15
158 419 0.21
159 158 0.08
160 191 0.10
161 28 0.01
162 8 0.00
163 6 0.00
164 7 0.00
165 9 0.00
166 81 0.04
167 24 0.01
168 6 0.00
169 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (156 bp):
TGAAAAGAATGGAGACTATTACGAGAATCCATGTTTGTCTCATTTGAGGGATGAACTTTGATTTA
TGGAAAATGGGGCAAAGAAAAGCTTTTCTTGAAAAGCAAAGCATCAATATCATGTATCCTAATAA
AGGAATGTGTTTATGGTGCCTAATCT
Found at i:1126925 original size:780 final size:771
Alignment explanation
Indices: 1123900--1128168 Score: 3587
Period size: 780 Copynumber: 5.5 Consensus size: 771
1123890 TAATGAAAAG
* * * * *
1123900 AATGGTGGTAAAAAAGCTTTTCTTGCA-A-AGCCAAACCATCAATGTCATGTATCCTAATG-AGG
1 AATGGTAGAAAAAAAGTTTTTCTTG-AGACA-CCAAAGCATCAATGTCATGTATCCCAATGAAGG
* * * * ** * **
1123962 -A--T-TTTTT-GTACCCAATCACT-AAAAGAATAGAGACTGTTACAAGAATCTATGTTTATCTC
64 AATGTGTTTTTGGTTCCCAATC-TTGAAAAGAATGGAGACTATTATGAGAATCCATGTTGGTCTC
** ** * * *
1124021 ATTTAAGGGACAAACTTTGATTTTAAGCTAAATAGGGCAAAAAAAAGCTTTCTTTGAGAAAGCAA
128 ATTTAAGGGATGAACTTTGATTTT--GGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAA
* * * * *
1124086 ATCATCAATATCTTGTAT-CTAATAAGGAAAACGTGTTTATGGTGCCTAATCCT-AAAAGGAATG
191 ATCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTGCC-AATCATGAAAA-GAATG
* * *
1124149 AAGATCATTACT---AT--ATGTTTATCTCATTTGAGGCATGAACTTATG-CTCTACG-AAAATG
254 AAGATCATTACTAGAATCCATATTTGTCTCATTTGAGG-AAGAACTTA-GACTCTACGAAAAATG
* * * *
1124207 GTGGGAAGAAAA-GCCTTT-CTTTCAAAACCAAAGCATCAATATCGTGTATTCTAATGAGAAGAA
317 G-AGGAAGAAAAGGCCTTTCCTTT-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAA
*
1124270 TGTGTTTATGGTGCCTAATCTTGAAA-AGAATGGGGATTATTATGAGAAT-CATGTTTATCTCAT
380 TGTGTTTATGGTGCCTAATCTTGAAAGA-AATGGGGATTATTATGAGAATCCATGTTTGTCTCAT
* * * * *
1124333 TTAAGAGATGAGCATT-AGGTCTATGAAAAATGGTGGT-AAAAAGGCTTTTCTTG-AAGGCAAAC
444 TTAAGAGATGAACTTTGA-TTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGAAAGGAAAAC
* **
1124395 CATCAATGTCAT-CTGTCCCAAT-AGGGATTTATGGTGTCCAATCACAAAAAGAATGGAGACTAT
508 CATCAATGTCATGC-ATCCCAATGA-GGATTT-TGGTGTCCAATCATGAAAAGAATGGAGACTA-
* * * ** *
1124458 TATAAGAATCCATGTTTGTCTCATTTAAGGGACAAACTTTGATTTTAAGGAAATTAGCTCAAA-A
569 CAT--G-A---ATGTTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAA-TAGGTCAAAGA
* * * * * * *
1124522 AAATGCTTTTCTTGCAAAGTCAACA-CATGAATATCATGTACCCCACTAAGGAGAACATGTTTCT
627 AAA-GCTTTTCTTGCAAAGCCAA-AGCATCAATATCACGTATCCCAATGAGGAGAACATGTTTAT
* * * * * * * **
1124586 CGTGCCCAAACATGAAAAG-T-GAGATTGTCAAGACAATCCAACTTTATCTTGTTTGAGGGACAA
690 GGTGCCCAATCTTGAAAAGATGGAGATTGTTACGACAATCCAAGTTTGTCTCATTTGAGGGACAA
1124649 ACTTTGATTTTATCAAA
755 ACTTTGATTTTATCAAA
* * *
1124666 AATGGTAGAAAGAAAAGCTATTCTTGTGACACCAAAGCATCAATGTCATGTATCCCAATGAAGGA
1 AATGGTAGAAA-AAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAATGAAGG-
** * * ** * *
1124731 AACATGTTTTTGGTTCCCAATCTCTG-AAAGAATGGACACTATTATGCGAATCTGTATTTGTCTC
64 AATGTGTTTTTGGTTCCCAATCT-TGAAAAGAATGGAGACTATTATGAGAATCCATGTTGGTCTC
* * *
1124795 ---------AT-AACATTGATTTTAAGGAAAATGGGGCAAAAAAAAGCTTTCCTTGCGAAAGCAA
128 ATTTAAGGGATGAACTTTGATTTT--GGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAA
* * * * *
1124850 ATCATTAATATCATGTATCTTAATGTGGAGAATGTGTTTGTGGTGTCCAATCATGAAAAAAATGA
191 ATCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTG-CCAATCATGAAAAGAATGA
** * * * * * * *
1124915 AGATTGTTACTCGAATCCATGTTTCTCTTATTTAAGGAAGAACTTAGGCTCTATGAAAAATGGAA
255 AGATCATTACTAGAATCCATATTTGTCTCATTTGAGGAAGAACTTAGACTCTACGAAAAATGG-A
* * * * * * *
1124980 GGAAGAAAAGGCCTTTCCTGTGAAACTAAAGCATCAATATAATATATCTTAATGAGAAGAATTTA
319 GGAAGAAAAGGCCTTTCCTTTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTG
* * * * * * *
1125045 TTTACGGTGCATAATCTTTAAA-AGAATGTGGATTATTATGAAAATCCTTGTTTGTCTCATTAAA
384 TTTATGGTGCCTAATCTTGAAAGA-AATGGGGATTATTATGAGAATCCATGTTTGTCTCATTTAA
* * * * * * * *
1125109 GAGACGATCTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCATATCCTAAAAGGAAAACCTTTA
448 GAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGAAAGGAAAACCATCA
* * *
1125174 ATGTCATGTATCCC--------TTTT-GTGTCCAATCATGAAAA-ACTAGAGACTATTACAAGAA
513 ATGTCATGCATCCCAATGAGGATTTTGGTGTCCAATCATGAAAAGAATGGAGAC---TAC----A
* * * * *
1125229 TCAATGTTTGTTTTATTTAAGGG-TGAACTTTGATTTTAAGGAAACAAGTCAAAGAAAAGCTTTT
571 TGAATGTTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAATAGGTCAAAGAAAAGCTTTT
* ** * * *
1125293 CCTGTGAAGCTAAAGCATC---A--A--TAT-CC-ATGAGGAGAACATGTTTACGGTGTCCAAT-
636 CTTGCAAAGCCAAAGCATCAATATCACGTATCCCAATGAGGAGAACATGTTTATGGTGCCCAATC
* * * ** *
1125348 TATGAAAAGATGGA-ATTGTTACGAAAATCCATGTTTGTCTTATTTGA-GGATGAACTTTGATTC
701 T-TGAAAAGATGGAGATTGTTACGACAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTGATTT
1125411 TATCAAA
765 TATCAAA
* * * *
1125418 AATGATGGAAACAAAAGTTTTTCTTGCGATACC-AAGCATCAATGTCATGTATCCCAATGAAGGG
1 AATGGTAGAAA-AAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAATGAA-GG
* * *
1125482 AATGTGATTTTGGTCCCCAATCTCGAAAAGAATGGAGACTATTATGAGAATCCATGTAT-GTCTC
64 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGT-TGGTCTC
* * * ** *
1125546 ATCTAAGGGATAAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGCTTTCCTTATGAAAGGAA
128 ATTTAAGGGATGAACTTTGATTTT--GGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAA
* * * ** *
1125611 ATCATCAATATCCTATATCCTAATGAAGG-GGATGTGTTTATGAAGCCTAATAATGAAAAGAATG
191 ATCATCAATATCATGTATCCTAATG-AGGAGAATGTGTTTATGGTGCC-AATCATGAAAAGAATG
* * * **
1125675 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTGTGAAAAATGG
254 AAGATCATTACTAGAATCCATATTTGTCTCATTTGAGG-AAGAACTTAGACTCTACGAAAAATGG
* * * * * *
1125740 TGGAAGAAAA-GCCTTT-CTTGTGAAAACAAAGCATCAAGATCATATATTCTAAAGAGAAGAATG
318 AGGAAGAAAAGGCCTTTCCTT-TGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATG
* * * * *
1125803 TGTTTATGGTGCGTGATCTTGAAAGAAATGGGGATTATTGTGAG-ATCCACGTATGTCTCATTTA
382 TGTTTATGGTGCCTAATCTTGAAAGAAATGGGGATTATTATGAGAATCCATGTTTGTCTCATTTA
* * * * *
1125867 GGAGATGAACTTTTATTCTATGAAATATGGCGGTAAAAAGAA-CATTTTCTTGAAATGAAAACCA
447 AGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAA-AAGC-TTTTCTTGAAAGGAAAACCA
* * **
1125931 TCAATGTCATGTATCCCAATGAGGATTTTGGTGTCTAATCGCGAAAAGAATGGAGACTACATGAA
510 TCAATGTCATGCATCCCAATGAGGATTTTGGTGTCCAATCATGAAAAGAATGGAGACTACATG-A
* * * * *
1125996 TCCATGTTTGTCTCATTTGAAGGTTGAACTTTGATTTTGAGTAAA-ATGGCTCAAAGAAAAGCTT
574 ---ATGTTTGTCTTATTTGAGGGATGAACTTTGATTTTAAGGAAATA-GG-TCAAAGAAAAGCTT
* * *
1126060 TTCTTG-AGAAGCCAAAGCATCAATATCGCATATCCCAATGAGGA-AA-ATGAGTTTACGGTGCC
634 TTCTTGCA-AAGCCAAAGCATCAATATCACGTATCCCAATGAGGAGAACAT--GTTTATGGTGCC
* *
1126122 CAATCTTGAAAAGATGGAGATTGTTATGATAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTG
696 CAATCTTGAAAAGATGGAGATTGTTACGACAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTG
1126187 ATTTTATCAAA
761 ATTTTATCAAA
* * * * * * * *
1126198 AATGGCAAAAAGAAAAG-TTTTCTTGAGATA-GAAAGCATCAATGTCACGTATTCTAATAAAAGG
1 AATGGTAGAAA-AAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAAT-GAAGG
* * * * *
1126261 AATGTGTTTTTGATTCCAAATCTTGAAAAGTATGGAGACTATTACGAGAATCCGTGTTGGTCTCA
64 AATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGTTGGTCTCA
* * * * *
1126326 TTTAGGGGATGAACTTTGATTTTGGAAAATGGGGCAAAGAAAAGCTTTTCTTGCAAAAGCAAATA
129 TTTAAGGGATGAACTTTGATTTTGGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAAATC
* **
1126391 ATCAATATCATGTATCCTAATGAGCAGAACATGTTTATGGTGTCCAATCATGAAAAGAATGAAGA
194 ATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTG-CCAATCATGAAAAGAATGAAGA
** * * *
1126456 TTGTTACTAGAATCCATATTTATCTCATTTGAGGAAGAATTTAGACTCTACAAAAAATGGAGGAA
258 TCATTACTAGAATCCATATTTGTCTCATTTGAGGAAGAACTTAGACTCTACGAAAAATGGAGGAA
** *
1126521 -AGAAAGTGTTTATGATGCCTAATTAGAAACCAAAGCATCAATATCATGTATCCTAATTAGAAGA
323 GA-AAAG-GCCT-T--T-CCT--TT-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGA
* * * *
1126585 AAGTGTTTATGATGCCTAATCTTGAAAGAAATGGGGATTATTATGAGAATCCATGTTTTTCTTAT
379 ATGTGTTTATGGTGCCTAATCTTGAAAGAAATGGGGATTATTATGAGAATCCATGTTTGTCTCAT
* * *
1126650 TTAGGGGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGAAATGAAAACC
444 TTAAGAGATGAACTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGAAAGGAAAACC
*
1126715 ATCAATGTCATGCATCCCAATGAGGAGTTTTGGTGTCCAATTATGAAAAGAATGGAGACTACATG
509 ATCAATGTCATGCATCCCAATGAGGA-TTTTGGTGTCCAATCATGAAAAGAATGGAGACTACATG
* * * *
1126780 AAT-TTTGTTTTATTTGAGGGTTTAACTTTGATTTCAAGGGAAATAGGTCAAAGAAAA-CTTTTC
573 AATGTTTGTCTTATTTGAGGGATGAACTTTGATTTTAA-GGAAATAGGTCAAAGAAAAGCTTTTC
* * *
1126843 TTGCAAAGCCAAAGCATCAATATCACGTATCCAAATGAGGAGAATATGTTGATGGTGCCCAATCT
637 TTGCAAAGCCAAAGCATCAATATCACGTATCCCAATGAGGAGAACATGTTTATGGTGCCCAATCT
* * *
1126908 TAAAAAGATGGAGATTGTTACGACAATCCAAGTTTATCTCATTTGAGGGAAAAACTTTGATTTTA
702 TGAAAAGATGGAGATTGTTACGACAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTGATTTTA
*
1126973 TAAAA
767 TCAAA
* * * * ***
1126978 AAT-GTTGAAAAAAAGTTTTTTTTGTGACACCAAAGCATCAATGTCATATATTTTAATGAAGGAA
1 AATGGTAGAAAAAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAATGAAGG-A
* * *
1127042 ATGCGTTTTTGGTTCCCAAT-TTCGAAAAGTAA-GGAGACTATAATGAGAATCCATGTTGGTCTT
65 ATGTGTTTTTGGTTCCCAATCTT-GAAAAG-AATGGAGACTATTATGAGAATCCATGTTGGTCTC
*
1127105 ATTTAAGGGATGAACTTTGATTTTGG-----A----AAA-AACA-CTTTCCTTGCGAAAGCAAAT
128 ATTTAAGGGATGAACTTTGATTTTGGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAG-----
* * * * **
1127159 CATCATATCATCAATATCATGCATCCTAATTAGGAGAATGTGTTTATAGTGCCTAATAACAAAAA
188 CA--A-ATCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTGCC-AATCATGAAAA
*
1127224 AAATGAAGATCATTACTAGAAT-C-TATGTT-TCTCATTTGAGGAATGAACTTAGACTCTACGAA
249 GAATGAAGATCATTACTAGAATCCATAT-TTGTCTCATTTGAGGAA-GAACTTAGACTCTACGAA
* * * ** * * * * *
1127286 AAATGGTGGAGGAAAA-GCCATT-CTTCCAAGACCTAAGCATCAACATCATGTATCTTAATTAAA
312 AAATGGAGGAAGAAAAGGCCTTTCCTTTGAA-ACCAAAGCATCAATATCATGTATCCTAA-TGAG
* * * * * ** * **
1127349 AAAAATGTCTTTATGGTGCCTAAT-ATGATAAG-AATAGGGACTCCTATGAGAATCTATACTTGT
375 AAGAATGTGTTTATGGTGCCTAATCTTGA-AAGAAATGGGGATTATTATGAGAATCCATGTTTGT
* * *
1127412 ATCATTTAAGAGATGAATTTTGATTCTATAAAAAAAATGGTGGTGAAAAAAAGC-TTTCTTGTAA
439 CTCATTTAAGAGATGAACTTTGATTCTAT--GAAAAATGGTGGT-AAAAAAAGCTTTTCTTG-AA
* * ** *
1127476 AGTAAAACCATCAATATCA--CATAACTTAATGAGGATTTTTGGTGCCCAATCATGAAAAGAATG
500 AGGAAAACCATCAATGTCATGCAT--CCCAATGAGGA-TTTTGGTGTCCAATCATGAAAAGAATG
* ** *
1127539 GAGACTATTACAGGAATCCATGTTCATCTTATTTGAGGGATGAACTTTGATTTTAAAGAAAATAG
562 GAGAC---TACATG-A---ATGTTTGTCTTATTTGAGGGATGAACTTTGATTTT-AAGGAAATAG
* * * * * * * * * **
1127604 GGCAGAG-AAAGCTTTCCTTGCAAAAG-CAAATCATCAATATCATGTATTCTAATGAGAAAAAGG
619 GTCAAAGAAAAGCTTTTCTTGC-AAAGCCAAAGCATCAATATCACGTATCCCAATGAGGAGAACA
* * * * * * *
1127667 TGTTTATGGTGGCTAATCTTGAAAAGAATGGAGATTATTATGAGAATCCATGTTTGTCTCATTTA
683 TGTTTATGGTGCCCAATCTTGAAAAG-ATGGAGATTGTTACGACAATCCAAGTTTGTCTCATTTG
* * *
1127732 AGAGACAAACTTTGATTCTATCTAA
747 AGGGACAAACTTTGATTTTATCAAA
* * *
1127757 AATGGTGAAACAAAAAAGTTTTTCTTGAGAGACCAAAGCATCATTGTCATGTATCCCAATGAAGC
1 AATGGT-AGA-AAAAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAATGAAG-
** * ** * * *
1127822 GAACATGTTTTTGGTTCCTAATCTTGAAAAGAATTAAGACAATTAT-AGGAATCCTTGTTTGTCT
63 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGA-GAATCCATGTTGGTCT
** * * * * * *
1127886 CATTTAATAGATGAACTTTGATTTAAGGAAAATAAGGAAAAGAAAGGCTTTCCTTGAGAAAGTAA
127 CATTTAAGGGATGAACTTTGATTT-TGGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAA
* * * ** *
1127951 ACCATCAATATCATTTATCCTAATGAGAAGAACATGTTTATGATGCACAATCATGAAAAGAATGA
191 ATCATCAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTGC-CAATCATGAAAAGAATGA
* *
1128016 AGATCATTACTACAATCCATATTTGTCTCATTTGAGGGAAGAACTTAGACTCTACAAAAAAATGG
255 AGATCATTACTAGAATCCATATTTGTCTCATTTGA-GGAAGAACTTAGACTCTAC-GAAAAATGG
* * * * * * * *
1128081 TCA-G-ACAAAATGCCTTT-CTTGCGAAGCCAAAGCATCAATATCATGTAGCATAATAAAAAGAA
318 --AGGAAGAAAAGGCCTTTCCTT-TGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAA
1128143 TGTGTTTATGGTGCCTAATCTTGAAA
380 TGTGTTTATGGTGCCTAATCTTGAAA
1128169 AGAATAAGGA
Statistics
Matches: 2838, Mismatches: 480, Indels: 347
0.77 0.13 0.09
Matches are distributed among these distances:
750 1 0.00
751 78 0.03
752 78 0.03
753 29 0.01
754 4 0.00
756 1 0.00
758 1 0.00
759 52 0.02
760 112 0.04
761 158 0.06
762 47 0.02
763 27 0.01
764 79 0.03
765 41 0.01
766 23 0.01
767 137 0.05
768 59 0.02
769 95 0.03
770 109 0.04
771 85 0.03
772 47 0.02
773 23 0.01
774 65 0.02
775 18 0.01
776 68 0.02
777 190 0.07
778 142 0.05
779 222 0.08
780 260 0.09
781 47 0.02
782 121 0.04
783 8 0.00
784 1 0.00
785 123 0.04
786 151 0.05
787 5 0.00
788 29 0.01
789 45 0.02
790 35 0.01
791 3 0.00
792 3 0.00
793 2 0.00
794 14 0.00
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (771 bp):
AATGGTAGAAAAAAAGTTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCCAATGAAGGAA
TGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTATTATGAGAATCCATGTTGGTCTCATT
TAAGGGATGAACTTTGATTTTGGAAAATAGGGCAAAGAAAAGCTTTCCTTGCGAAAGCAAATCAT
CAATATCATGTATCCTAATGAGGAGAATGTGTTTATGGTGCCAATCATGAAAAGAATGAAGATCA
TTACTAGAATCCATATTTGTCTCATTTGAGGAAGAACTTAGACTCTACGAAAAATGGAGGAAGAA
AAGGCCTTTCCTTTGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGAATGTGTTTATGG
TGCCTAATCTTGAAAGAAATGGGGATTATTATGAGAATCCATGTTTGTCTCATTTAAGAGATGAA
CTTTGATTCTATGAAAAATGGTGGTAAAAAAAGCTTTTCTTGAAAGGAAAACCATCAATGTCATG
CATCCCAATGAGGATTTTGGTGTCCAATCATGAAAAGAATGGAGACTACATGAATGTTTGTCTTA
TTTGAGGGATGAACTTTGATTTTAAGGAAATAGGTCAAAGAAAAGCTTTTCTTGCAAAGCCAAAG
CATCAATATCACGTATCCCAATGAGGAGAACATGTTTATGGTGCCCAATCTTGAAAAGATGGAGA
TTGTTACGACAATCCAAGTTTGTCTCATTTGAGGGACAAACTTTGATTTTATCAAA
Found at i:1128101 original size:318 final size:318
Alignment explanation
Indices: 1127511--1128173 Score: 712
Period size: 318 Copynumber: 2.1 Consensus size: 318
1127501 TTAATGAGGA
* * * * * *
1127511 TTTTTGGTGCCCAATCATGAAAAGAATGGAGACTATTACAGGAATCCATGTTCATCTTATTTGAG
1 TTTTTGGTGCCTAATCTTGAAAAGAATGAAGACAATTACAGGAATCCATGTTCATCTCATTTAAG
* * * * *
1127576 GGATGAACTTTGATTTTAAAGAAAATAGGGCAGAGAAAGCTTTCCTTGCAAAAGCAAATCATCAA
66 AGATGAACTTTGATTTTAAAGAAAATAAGGAAAAGAAAGCTTTCCTTGCAAAAGCAAACCATCAA
* ** * * * * *
1127641 TATCATGTATTCTAATGAGAAAAAGGTGTTTATGGTGGCTAATCTTGAAAAGAATGGAGATTATT
131 TATCATGTATCCTAATGAGAAAAACATGTTTATGATGGCCAATCATGAAAAGAATGAAGATCATT
* * * * * *
1127706 ATGAGAATCCATGTTTGTCTCATTTAAGAGACAAACTTTGATTCTATCTAAAATGGTGAAACAAA
196 ATGACAATCCATATTTGTCTCATTTAAGAGACAAACTTAGACTCTATCAAAAATGGTCAAACAAA
** * * * * * **
1127771 AAAGTTTTTCTTGAG-AGACCAAAGCATCATTGTCATGTATCCCAATGAAGCGAACATG
261 AAAGCCTTTCTTGAGAAG-CCAAAGCATCAATATCATGTAGCACAATAAAAAGAACATG
* * * * ** *
1127829 TTTTTGGTTCCTAATCTTGAAAAGAATTAAGACAATTATAGGAATCCTTGTTTGTCTCATTTAAT
1 TTTTTGGTGCCTAATCTTGAAAAGAATGAAGACAATTACAGGAATCCATGTTCATCTCATTTAAG
* *
1127894 AGATGAACTTTGA-TTTAAGGAAAATAAGGAAAAGAAAGGCTTTCCTTG-AGAAAGTAAACCATC
66 AGATGAACTTTGATTTTAAAGAAAATAAGGAAAAGAAA-GCTTTCCTTGCA-AAAGCAAACCATC
* *
1127957 AATATCATTTATCCTAATGAGAAGAACATGTTTATGAT-GCACAATCATGAAAAGAATGAAGATC
129 AATATCATGTATCCTAATGAGAAAAACATGTTTATGATGGC-CAATCATGAAAAGAATGAAGATC
* *
1128021 ATTACT-ACAATCCATATTTGTCTCATTTGAGGGA-AGAACTTAGACTCTA-CAAAAAAATGGTC
193 ATTA-TGACAATCCATATTTGTCTCATTTAAGAGACA-AACTTAGACTCTATC--AAAAATGGTC
* * * * **
1128083 AGAC-AAAATGCCTTTCTTGCGAAGCCAAAGCATCAATATCATGTAGCATAATAAAAAGAATGTG
254 AAACAAAAAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATGTAGCACAATAAAAAGAACATG
*
1128147 TTTATGGTGCCTAATCTTGAAAAGAAT
1 TTTTTGGTGCCTAATCTTGAAAAGAAT
1128174 AAGGATTAAC
Statistics
Matches: 282, Mismatches: 55, Indels: 16
0.80 0.16 0.05
Matches are distributed among these distances:
317 25 0.09
318 243 0.86
319 14 0.05
ACGTcount: A:0.38, C:0.14, G:0.18, T:0.31
Consensus pattern (318 bp):
TTTTTGGTGCCTAATCTTGAAAAGAATGAAGACAATTACAGGAATCCATGTTCATCTCATTTAAG
AGATGAACTTTGATTTTAAAGAAAATAAGGAAAAGAAAGCTTTCCTTGCAAAAGCAAACCATCAA
TATCATGTATCCTAATGAGAAAAACATGTTTATGATGGCCAATCATGAAAAGAATGAAGATCATT
ATGACAATCCATATTTGTCTCATTTAAGAGACAAACTTAGACTCTATCAAAAATGGTCAAACAAA
AAAGCCTTTCTTGAGAAGCCAAAGCATCAATATCATGTAGCACAATAAAAAGAACATG
Found at i:1128275 original size:12 final size:12
Alignment explanation
Indices: 1128258--1128297 Score: 71
Period size: 12 Copynumber: 3.2 Consensus size: 12
1128248 CTTGCAGAGC
1128258 CAATTAAAATGT
1 CAATTAAAATGT
1128270 CAATTAAAATGT
1 CAATTAAAATGT
1128282 CCAATTAAAATGT
1 -CAATTAAAATGT
1128295 CAA
1 CAA
1128298 AAAAAGCCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 15 0.56
13 12 0.44
ACGTcount: A:0.50, C:0.12, G:0.07, T:0.30
Consensus pattern (12 bp):
CAATTAAAATGT
Found at i:1128288 original size:13 final size:13
Alignment explanation
Indices: 1128257--1128295 Score: 71
Period size: 13 Copynumber: 3.1 Consensus size: 13
1128247 TCTTGCAGAG
1128257 CCAATTAAAATGT
1 CCAATTAAAATGT
1128270 -CAATTAAAATGT
1 CCAATTAAAATGT
1128282 CCAATTAAAATGT
1 CCAATTAAAATGT
1128295 C
1 C
1128296 AAAAAAAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.48
13 13 0.52
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
CCAATTAAAATGT
Found at i:1133958 original size:15 final size:15
Alignment explanation
Indices: 1133895--1133959 Score: 50
Period size: 15 Copynumber: 4.6 Consensus size: 15
1133885 TCTTTTTTTA
*
1133895 TTTTTTCTGCCAACAT
1 TTTTTTTTGCCAAC-T
*
1133911 TTTTTTTTGTCAACT
1 TTTTTTTTGCCAACT
*
1133926 TTTTCTTTG---A--
1 TTTTTTTTGCCAACT
*
1133936 TTTCTTTTGCCAACT
1 TTTTTTTTGCCAACT
1133951 TTTTTTTTG
1 TTTTTTTTG
1133960 ATATGAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 11
0.69 0.11 0.20
Matches are distributed among these distances:
10 7 0.18
12 1 0.03
13 1 0.03
15 17 0.45
16 12 0.32
ACGTcount: A:0.12, C:0.17, G:0.08, T:0.63
Consensus pattern (15 bp):
TTTTTTTTGCCAACT
Found at i:1135452 original size:258 final size:252
Alignment explanation
Indices: 1134985--1135480 Score: 636
Period size: 258 Copynumber: 1.9 Consensus size: 252
1134975 TTGAGGCATG
* *
1134985 AACCTAGACTCTACGAAAAATGGTGTAAAAAAAGCCATTCTTGTGAAACCAAAGCATCAACATTA
1 AACCTAGACTCTACGAAAAATGGTGAAAAAAAAGCCATTCTTGTGAAACCAAAGCATCAACATCA
* * * * *
1135050 TGTATCTTAAGAAGAGTGTGTTTACGTGCCTAATCTTGAAAAAAATGGGGATTATTATGAAAATA
66 TGTATCTTAAGAAGAATATGTTTACGCGCCTAATCTTGAAAAAAATGAGAATTATTATGAAAATA
* * * *
1135115 CATGTTTGTCTCATTTAAGAGACGAACTTTGATTCTACAAAAAATGGTGATAAAAAAATTTTTTA
131 CAAGTTTATCTCATTTAAGAGAC-AACTTTGACTCTACAAAAAATAGTGATAAAAAAATTTTTTA
* *
1135180 GCAAAGCCAAACCATCAATGTCATGTATCCCAATTAGGATTTTAGTGCCCAATCACGA
195 GCAAAGCCAAACCATCAATGTCATGTATCACAATGAGGATTTTAGTGCCCAATCACGA
* * *
1135238 AACCTAGCCTCTATGAAAAATGGTGAAAAAAAAAGCCATTCTTGTGAAACCAAAGCATCAATATC
1 AACCTAGACTCTACGAAAAATGGTG-AAAAAAAAGCCATTCTTGTGAAACCAAAGCATCAACATC
* * * *
1135303 ATGTATCCTAATGAGAAGAATATGTTTATGGCGCCTAATCTTGAAAATAATGAGAATTATTATGG
65 ATGTAT-CT--TAAGAAGAATATGTTTA-CGCGCCTAATCTTGAAAAAAATGAGAATTATTATGA
* * *** *
1135368 GAATCCAAGTTTATCTCATTTAAGAGA-AACTTTGACTCTATGGAAAATAGTGGTAAAAAAAGCT
126 AAATACAAGTTTATCTCATTTAAGAGACAACTTTGACTCTACAAAAAATAGTGATAAAAAAA--T
* * *
1135432 TTTCTT-GTAAAGCTAAACCATCAATGTCATGTATCATAATGAGGATTTT
189 TTT-TTAGCAAAGCCAAACCATCAATGTCATGTATCACAATGAGGATTTT
1135481 TGGTGCCTAA
Statistics
Matches: 206, Mismatches: 29, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
253 23 0.11
254 42 0.20
255 2 0.01
256 28 0.14
257 14 0.07
258 95 0.46
259 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30
Consensus pattern (252 bp):
AACCTAGACTCTACGAAAAATGGTGAAAAAAAAGCCATTCTTGTGAAACCAAAGCATCAACATCA
TGTATCTTAAGAAGAATATGTTTACGCGCCTAATCTTGAAAAAAATGAGAATTATTATGAAAATA
CAAGTTTATCTCATTTAAGAGACAACTTTGACTCTACAAAAAATAGTGATAAAAAAATTTTTTAG
CAAAGCCAAACCATCAATGTCATGTATCACAATGAGGATTTTAGTGCCCAATCACGA
Found at i:1136763 original size:80 final size:80
Alignment explanation
Indices: 1136547--1136769 Score: 259
Period size: 80 Copynumber: 2.8 Consensus size: 80
1136537 TACATGATTG
* * * * * **
1136547 GAGTACCCCTGATGGTGAAAAATTCGATATTTTGGAAGTAAAAACTGGGTTGGAGTATCCCTTTG
1 GAGTAACCCTAATGGTGAAAAATTCGATATTTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTCA
* * *
1136612 GAAATGATGGGGTTG
66 GAAATGATGAGGCTA
* * * *
1136627 GAGTAACCCTAATGGTGAAAAATTCAATAATTTTAGAAGTAAAAATGAGGTTAGAGTATCCCCTC
1 GAGTAACCCTAATGGTGAAAAATTCGAT-ATTTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTC
1136692 AGAAATGATGAGGCTA
65 AGAAATGATGAGGCTA
* * * *
1136708 GAGTATCCC-AATGGTGAAAATTTTGATATTTTTGGAAGTAAAAACGGGGTCAGAGTATCCCC
1 GAGTAACCCTAATGGTGAAAAATTCGATA-TTTTGGAAGTAAAAACGGGGTTAGAGTATCCCC
1136770 GATGATGAAA
Statistics
Matches: 119, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
79 1 0.01
80 69 0.58
81 49 0.41
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.28
Consensus pattern (80 bp):
GAGTAACCCTAATGGTGAAAAATTCGATATTTTGGAAGTAAAAACGGGGTTAGAGTATCCCCTCA
GAAATGATGAGGCTA
Found at i:1136798 original size:52 final size:53
Alignment explanation
Indices: 1136707--1136821 Score: 162
Period size: 52 Copynumber: 2.2 Consensus size: 53
1136697 TGATGAGGCT
* * *
1136707 AGAGTAT-CCCAATGGTGAAAATTTTGATATTTTTGGAAGTAAAAACGGGGTC
1 AGAGTATCCCCAATGATGAAAATTTTAATATTTTAGGAAGTAAAAACGGGGTC
* * *
1136759 AGAGTATCCCCGATGATGAAAATTTTAATA-TTTAGGAAGTAAAAATGGGGTT
1 AGAGTATCCCCAATGATGAAAATTTTAATATTTTAGGAAGTAAAAACGGGGTC
1136811 AGAGTATCCCC
1 AGAGTATCCCC
1136822 TTGGAAATGA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
52 37 0.66
53 19 0.34
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (53 bp):
AGAGTATCCCCAATGATGAAAATTTTAATATTTTAGGAAGTAAAAACGGGGTC
Found at i:1136811 original size:132 final size:129
Alignment explanation
Indices: 1136654--1136900 Score: 354
Period size: 132 Copynumber: 1.9 Consensus size: 129
1136644 AAAAATTCAA
1136654 TAATTTTAGAAGTAAAAATGAGGTTAGAGTATCCCCTCAGAAATGAT-GAGGCTAGAGTAT-CCC
1 TAATTTTAGAAGTAAAAATGAGGTTAGAGTATCCCCTCAGAAATGATAG-GGCTAGAGTATCCCC
* * *
1136717 AATGGTGAAAATTTTGATATTTTTGGAAGTAAAAACGGGGTCAGAGTATCCCCGATGATGAAAAT
65 AATGGTGAAAA-ATCGATA-TTTTGGAAATAAAAACGGGGTCAGAGTATCCCCGATGATGAAAAT
1136782 TT
128 TT
* ** *
1136784 TAATATTTAGGAAGTAAAAATGGGGTTAGAGTATCCCCTTGGAAATGATAGGGTTAGAGTATCCC
1 TAAT-TTTA-GAAGTAAAAATGAGGTTAGAGTATCCCCTCAGAAATGATAGGGCTAGAGTATCCC
* *
1136849 CAATGGTGAAAAATCGATATTTTGGAAATAAAAATGGGGTTAGAGTATCCCC
64 CAATGGTGAAAAATCGATATTTTGGAAATAAAAACGGGGTCAGAGTATCCCC
1136901 TAGGAAATGA
Statistics
Matches: 104, Mismatches: 9, Indels: 7
0.87 0.08 0.06
Matches are distributed among these distances:
130 4 0.04
131 34 0.33
132 51 0.49
133 15 0.14
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (129 bp):
TAATTTTAGAAGTAAAAATGAGGTTAGAGTATCCCCTCAGAAATGATAGGGCTAGAGTATCCCCA
ATGGTGAAAAATCGATATTTTGGAAATAAAAACGGGGTCAGAGTATCCCCGATGATGAAAATTT
Found at i:1136887 original size:79 final size:80
Alignment explanation
Indices: 1136754--1136926 Score: 233
Period size: 79 Copynumber: 2.2 Consensus size: 80
1136744 AGTAAAAACG
* * * * *
1136754 GGGTCAGAGTATCCCCGATGATGAAAATTTTAATATTTAGGAAGTAAAAATGGGGTTAGAGTATC
1 GGGTTAGAGTATCCCCAATGATGAAAATATCAATATTTAGGAAATAAAAATGGGGTTAGAGTATC
*
1136819 CCCTTGGAAATGATA
66 CCCTAGGAAATGATA
* * *
1136834 GGGTTAGAGTATCCCCAATGGTGAAAA-ATCGATATTTTGGAAATAAAAATGGGGTTAGAGTATC
1 GGGTTAGAGTATCCCCAATGATGAAAATATCAATATTTAGGAAATAAAAATGGGGTTAGAGTATC
*
1136898 CCCTAGGAAATGATG
66 CCCTAGGAAATGATA
1136913 GGGTT-GAAGTATCC
1 GGGTTAG-AGTATCC
1136927 AATAAGATGA
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
78 1 0.01
79 57 0.70
80 24 0.29
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (80 bp):
GGGTTAGAGTATCCCCAATGATGAAAATATCAATATTTAGGAAATAAAAATGGGGTTAGAGTATC
CCCTAGGAAATGATA
Found at i:1139335 original size:51 final size:51
Alignment explanation
Indices: 1139264--1139386 Score: 167
Period size: 51 Copynumber: 2.4 Consensus size: 51
1139254 AGCTTGCATT
* * * *
1139264 TATCTATACATTGAAGAATGTAT-GATACATTTGGGTCAAAAACCCAGAATG
1 TATCGATACAATGAAAAATGTATCGATACATTTGGG-CAAAAACCCAAAATG
* * *
1139315 TATTGATACAATGAAAAATGTATCGATATATTTGGGCTAAAACCCAAAATG
1 TATCGATACAATGAAAAATGTATCGATACATTTGGGCAAAAACCCAAAATG
1139366 TATCGATACAATGAAAAATGT
1 TATCGATACAATGAAAAATGT
1139387 TTTGACCCAT
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 52 0.83
52 11 0.17
ACGTcount: A:0.42, C:0.12, G:0.16, T:0.29
Consensus pattern (51 bp):
TATCGATACAATGAAAAATGTATCGATACATTTGGGCAAAAACCCAAAATG
Found at i:1140971 original size:28 final size:28
Alignment explanation
Indices: 1140938--1141003 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
1140928 AAAATTGAGA
*
1140938 TTGGAGTATCCCCTCGAAAATAATAGGG
1 TTGGAGTATCCCCTCGAAAATAACAGGG
*
1140966 TTGGAGTATCCTCTCGAAAATAACAGGG
1 TTGGAGTATCCCCTCGAAAATAACAGGG
1140994 TTGGAGTATC
1 TTGGAGTATC
1141004 TCTAATGGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (28 bp):
TTGGAGTATCCCCTCGAAAATAACAGGG
Done.