Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold450
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 725389
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
File 1 of 5
Found at i:542 original size:33 final size:33
Alignment explanation
Indices: 482--575 Score: 100
Period size: 33 Copynumber: 2.8 Consensus size: 33
472 GAAGCAATGT
* * *
482 ATCGATACAAT-TCATCATGTATTGATACATTGC
1 ATCGATACAATGTGA-CACGTATCGATACATTGC
* *
515 ATCGATACAATGTGCCACGTATCGATACATTGT
1 ATCGATACAATGTGACACGTATCGATACATTGC
* **
548 ATCGATAGAATGTGACATATATCGATAC
1 ATCGATACAATGTGACACGTATCGATAC
576 TGTAGACACC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
33 50 0.98
34 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (33 bp):
ATCGATACAATGTGACACGTATCGATACATTGC
Found at i:1034 original size:20 final size:19
Alignment explanation
Indices: 1009--1082 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
999 TTTACCCAGA
1009 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
*
1029 TGTATCGATACATTGCTCAT
1 TGTATCGATACATT-TTCAT
*
1049 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
1069 TGTATCGACACATT
1 TGTATCGATACATT
1083 CAAGCATTTT
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 1 0.02
20 46 0.96
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.41
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:3451 original size:51 final size:50
Alignment explanation
Indices: 3390--3547 Score: 196
Period size: 51 Copynumber: 3.2 Consensus size: 50
3380 TTCATCTCGA
* *
3390 GGATACTCCAA-TCTCGGTTTCATTTCCAAAACATCAATTTTTCTTAATCGG
1 GGATACTCCAACTC-CGGTTTTATTTCTAAAACATCAATTTTTC-TAATCGG
* * * * *
3441 GGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAATCGA
1 GGATACTCCAACTCCGGTTTTATTTCTAAAACATCAATTTTTC-TAATCGG
*
3492 GGATACTCCAACTCCGGTTTTATTTCTTAAACATCAATTTTTC--ATCGG
1 GGATACTCCAACTCCGGTTTTATTTCTAAAACATCAATTTTTCTAATCGG
3540 GGATACTC
1 GGATACTC
3548 TAACCCCGTT
Statistics
Matches: 92, Mismatches: 14, Indels: 5
0.83 0.13 0.05
Matches are distributed among these distances:
48 12 0.13
51 78 0.85
52 2 0.02
ACGTcount: A:0.28, C:0.25, G:0.11, T:0.36
Consensus pattern (50 bp):
GGATACTCCAACTCCGGTTTTATTTCTAAAACATCAATTTTTCTAATCGG
Found at i:3655 original size:75 final size:76
Alignment explanation
Indices: 3492--3717 Score: 249
Period size: 76 Copynumber: 2.9 Consensus size: 76
3482 CCATAATCGA
* * * *
3492 GGATACTCCAACTCCGGTTTTATTTCTTAAACATCAATTTTTCATCGGGGATACTCTAACCCCGT
1 GGATACTCCAACCCCGGTATTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGT
*
3557 TATTTTCGAGG
66 TATTTCCGAGG
* * *
3568 GTATACTCCAACCCCGGTATTATTTCTAAAACATCAATTTTTCATC-TGGATACTCCAACCTCGT
1 GGATACTCCAACCCCGGTATTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGT
3632 TATTTCCGAGG
66 TATTTCCGAGG
** * * * * *
3643 GGATACTCCAACCGTGGCT-TTATATGTAAAAACACCCATTTTTCATAATCGGGGGTACTCCAAC
1 GGATACTCCAACCCCGG-TATTATTTCT-AAAACATCAATTTTTC---ATCGGGGATACTCCAAC
*
3707 CCCATTATTTC
61 CCCGTTATTTC
3718 ATCGAGGATA
Statistics
Matches: 125, Mismatches: 19, Indels: 8
0.82 0.12 0.05
Matches are distributed among these distances:
75 45 0.36
76 57 0.46
79 3 0.02
80 20 0.16
ACGTcount: A:0.26, C:0.26, G:0.14, T:0.34
Consensus pattern (76 bp):
GGATACTCCAACCCCGGTATTATTTCTAAAACATCAATTTTTCATCGGGGATACTCCAACCCCGT
TATTTCCGAGG
Found at i:3729 original size:28 final size:27
Alignment explanation
Indices: 3698--3766 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
3688 TAATCGGGGG
3698 TACTCCAACCCCATTATTTCATCGA-GGA
1 TACTCCAACCCCATTATTT--TCGAGGGA
* *
3726 TACTCTAATCCCATTATTTTCGAGGGGA
1 TACTCCAACCCCATTATTTTCGA-GGGA
3754 TACTCCAACCCCA
1 TACTCCAACCCCA
3767 ATTTTTATTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
26 4 0.11
28 31 0.89
ACGTcount: A:0.28, C:0.32, G:0.12, T:0.29
Consensus pattern (27 bp):
TACTCCAACCCCATTATTTTCGAGGGA
Found at i:3857 original size:51 final size:52
Alignment explanation
Indices: 3750--3867 Score: 150
Period size: 51 Copynumber: 2.3 Consensus size: 52
3740 TATTTTCGAG
* *
3750 GGGATACTCCAACCCCAATTTTTATTTTCAAAACACCAATTTCTCACAATCG
1 GGGATACTCCAACCCCAATTTTTAGTTTCAAAACACCAATTTCTCACAATCA
* * * * *
3802 GGGATACTCCAACCCCGA-TTTTAGTTTCAAAATACCGATTT-TCTATAATTA
1 GGGATACTCCAACCCCAATTTTTAGTTTCAAAACACCAATTTCTC-ACAATCA
3853 GGGATACTCCAACCC
1 GGGATACTCCAACCC
3868 TGTTATTTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 3
0.85 0.10 0.04
Matches are distributed among these distances:
50 2 0.03
51 39 0.67
52 17 0.29
ACGTcount: A:0.31, C:0.27, G:0.11, T:0.31
Consensus pattern (52 bp):
GGGATACTCCAACCCCAATTTTTAGTTTCAAAACACCAATTTCTCACAATCA
Found at i:4925 original size:19 final size:19
Alignment explanation
Indices: 4882--4954 Score: 94
Period size: 20 Copynumber: 3.7 Consensus size: 19
4872 CTGGAAGTTT
*
4882 CATGTATCGATACAATTGTA
1 CATGTATCGATACAA-TGAA
4902 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
4921 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
4942 -ATGTATCGATACA
1 CATGTATCGATACA
4955 TCTAGGTGTG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
19 19 0.39
20 29 0.59
21 1 0.02
ACGTcount: A:0.40, C:0.16, G:0.15, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:5541 original size:21 final size:22
Alignment explanation
Indices: 5517--5557 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
5507 GTTTAAAAAA
5517 TTTCT-CCCCTTGATAAAAAGT
1 TTTCTCCCCCTTGATAAAAAGT
5538 TTTCTCCCCCTTGATAAAAA
1 TTTCTCCCCCTTGATAAAAA
5558 TTTATTTTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.29, C:0.27, G:0.07, T:0.37
Consensus pattern (22 bp):
TTTCTCCCCCTTGATAAAAAGT
Found at i:8865 original size:34 final size:34
Alignment explanation
Indices: 8822--8889 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
8812 TCTATTAAAA
8822 CCTTTTTCAATCAAAAATTTT-AAAAGCCTTTCGT
1 CCTTTTTCAATCAAAAATTTTGAAAA-CCTTTCGT
8856 CCTTTTTCAATCAAAAATTTTGAAAACCTTTCGT
1 CCTTTTTCAATCAAAAATTTTGAAAACCTTTCGT
8890 ACGAAGCTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 29 0.88
35 4 0.12
ACGTcount: A:0.32, C:0.21, G:0.06, T:0.41
Consensus pattern (34 bp):
CCTTTTTCAATCAAAAATTTTGAAAACCTTTCGT
Found at i:13474 original size:33 final size:33
Alignment explanation
Indices: 13432--13496 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
13422 TTTGAAGCAA
13432 TGTATCGATACAAT-T-CATCATGTATCAATACAT
1 TGTATCGATACAATGTGC--CATGTATCAATACAT
13465 TGTATCGATACAATGTGCCATGTATCAATACA
1 TGTATCGATACAATGTGCCATGTATCAATACA
13497 AACATTGGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 28 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.34
Consensus pattern (33 bp):
TGTATCGATACAATGTGCCATGTATCAATACAT
Found at i:13553 original size:96 final size:96
Alignment explanation
Indices: 13431--13655 Score: 398
Period size: 96 Copynumber: 2.3 Consensus size: 96
13421 ATTTGAAGCA
13431 ATGTATCGATACAATTCATCATGTATCAATACATTGTATCGATACAATGTGCCATGTATCAATAC
1 ATGTATCGATACAATTCATCATGTATCAATACATTGTATCGATACAATGTGCCATGTATCAATAC
13496 AAACATTGGTAGGGTAGCTACTGCCTGTTTC
66 AAACATTGGTAGGGTAGCTACTGCCTGTTTC
* *
13527 ATGTATCGATATAATTCATCATGTATCAATACATTGTATCGATACAATGTGCCATGTATCGATAC
1 ATGTATCGATACAATTCATCATGTATCAATACATTGTATCGATACAATGTGCCATGTATCAATAC
13592 AAACATTGGTAGGGTAGCTACTGCCTGTTTC
66 AAACATTGGTAGGGTAGCTACTGCCTGTTTC
* *
13623 ATGTATCGATACAATT-GTACATGTATCGATACA
1 ATGTATCGATACAATTCAT-CATGTATCAATACA
13656 ATGAACATGT
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
95 1 0.01
96 122 0.99
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.34
Consensus pattern (96 bp):
ATGTATCGATACAATTCATCATGTATCAATACATTGTATCGATACAATGTGCCATGTATCAATAC
AAACATTGGTAGGGTAGCTACTGCCTGTTTC
Found at i:13647 original size:20 final size:20
Alignment explanation
Indices: 13622--13679 Score: 84
Period size: 19 Copynumber: 3.0 Consensus size: 20
13612 CTGCCTGTTT
13622 CATGTATCGATACAATTGTA
1 CATGTATCGATACAATTGTA
*
13642 CATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGTA
*
13661 CATGTATCAATAC-ATTGTA
1 CATGTATCGATACAATTGTA
13680 TCGATACAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 1 0.03
19 18 0.53
20 15 0.44
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGTA
Found at i:13680 original size:32 final size:33
Alignment explanation
Indices: 13640--13708 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
13630 GATACAATTG
*
13640 TACA-TGTATCGATACAATG-A-ACATGTATCAA
1 TACATTGTATCGATACAAAGCATA-ATGTATCAA
13671 TACATTGTATCGATACAAAGCATAATGTATCAA
1 TACATTGTATCGATACAAAGCATAATGTATCAA
13704 TACAT
1 TACAT
13709 CTGGGTGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 4 0.12
32 14 0.41
33 15 0.44
34 1 0.03
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (33 bp):
TACATTGTATCGATACAAAGCATAATGTATCAA
Found at i:13863 original size:21 final size:22
Alignment explanation
Indices: 13811--13867 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
13801 GAAGTATTTT
*
13811 TACTTAAAAACATTTGATTTAA
1 TACTCAAAAACATTTGATTTAA
*
13833 TATTCAAAAACATTTG-TTT-A
1 TACTCAAAAACATTTGATTTAA
*
13853 TAACTCTAAAACATT
1 T-ACTCAAAAACATT
13868 CGTTGATATA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
20 2 0.07
21 14 0.47
22 14 0.47
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (22 bp):
TACTCAAAAACATTTGATTTAA
Found at i:15141 original size:13 final size:13
Alignment explanation
Indices: 15123--15147 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15113 CATTTTACTA
15123 TGTATCGATACAT
1 TGTATCGATACAT
15136 TGTATCGATACA
1 TGTATCGATACA
15148 AACAGTGATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:15200 original size:20 final size:20
Alignment explanation
Indices: 15175--15231 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
15165 TACTATCAGT
15175 TTCATGTATCGATACAATTC
1 TTCATGTATCGATACAATTC
* * *
15195 TTCATGTATTGATATAA-TG
1 TTCATGTATCGATACAATTC
* *
15214 ATCATGTATCGATGCAAT
1 TTCATGTATCGATACAAT
15232 GTTTTGATAC
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.32, C:0.14, G:0.14, T:0.40
Consensus pattern (20 bp):
TTCATGTATCGATACAATTC
Found at i:15232 original size:19 final size:19
Alignment explanation
Indices: 15176--15232 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
15166 ACTATCAGTT
**
15176 TCATGTATCGATACAATTCT
1 TCATGTATCGATACAA-TGA
* *
15196 TCATGTATTGATATAATGA
1 TCATGTATCGATACAATGA
*
15215 TCATGTATCGATGCAATG
1 TCATGTATCGATACAATG
15233 TTTTGATACA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
19 16 0.53
20 14 0.47
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.39
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:18236 original size:10 final size:10
Alignment explanation
Indices: 18218--18259 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
18208 AATGAAGGAG
18218 ATTGATACCA
1 ATTGATACCA
*
18228 ATTGTTACCA
1 ATTGATACCA
*
18238 ATTGAT-GCA
1 ATTGATACCA
18247 A-TGATACCA
1 ATTGATACCA
18256 ATTG
1 ATTG
18260 TTGAAAGATT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
8 4 0.15
9 6 0.23
10 16 0.62
ACGTcount: A:0.36, C:0.17, G:0.14, T:0.33
Consensus pattern (10 bp):
ATTGATACCA
Found at i:19310 original size:36 final size:34
Alignment explanation
Indices: 19224--19320 Score: 112
Period size: 36 Copynumber: 2.9 Consensus size: 34
19214 CCTTACAACA
*
19224 CTATC-TTTCAAGGCTAAGATAGAA--AC-CTCC
1 CTATCTTTTCAAGGCTAAGATAGAACCTCTCTCC
* *
19254 CTATCTTTTCACGAGTTAAGATAGAACCTCTCTCC
1 CTATCTTTTCAAG-GCTAAGATAGAACCTCTCTCC
19289 CTATCTTTTTCAAAGGCTAAGATAGAACCTCT
1 CTATC-TTTTC-AAGGCTAAGATAGAACCTCT
19321 TAATCACTTC
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
30 5 0.09
31 6 0.11
32 11 0.20
34 1 0.02
35 9 0.16
36 21 0.38
37 2 0.04
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (34 bp):
CTATCTTTTCAAGGCTAAGATAGAACCTCTCTCC
Found at i:19763 original size:20 final size:20
Alignment explanation
Indices: 19738--19812 Score: 80
Period size: 20 Copynumber: 3.6 Consensus size: 20
19728 AATTGGACTC
19738 AATGTATCGATACTATTCAT
1 AATGTATCGATACTATTCAT
*
19758 AATGTATCGATAC-ATGAACAGT
1 AATGTATCGATACTAT--TCA-T
* * *
19780 GATGTATCAATACTATTCAC
1 AATGTATCGATACTATTCAT
19800 AATGTATCGATAC
1 AATGTATCGATAC
19813 ATGAACAGTG
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
19 2 0.05
20 24 0.55
21 4 0.09
22 12 0.27
23 2 0.05
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACTATTCAT
Found at i:19787 original size:22 final size:22
Alignment explanation
Indices: 19759--19824 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
19749 ACTATTCATA
19759 ATGTATCGATACATGAACAGTG
1 ATGTATCGATACATGAACAGTG
* **
19781 ATGTATCAATACTATTCACA---
1 ATGTATCGATAC-ATGAACAGTG
19801 ATGTATCGATACATGAACAGTG
1 ATGTATCGATACATGAACAGTG
19823 AT
1 AT
19825 TAATAGTGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
19 5 0.15
20 11 0.32
22 13 0.38
23 5 0.15
ACGTcount: A:0.38, C:0.15, G:0.17, T:0.30
Consensus pattern (22 bp):
ATGTATCGATACATGAACAGTG
Found at i:19798 original size:42 final size:42
Alignment explanation
Indices: 19739--19824 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
19729 ATTGGACTCA
* *
19739 ATGTATCGATACTATTCATAATGTATCGATACATGAACAGTG
1 ATGTATCAATACTATTCACAATGTATCGATACATGAACAGTG
19781 ATGTATCAATACTATTCACAATGTATCGATACATGAACAGTG
1 ATGTATCAATACTATTCACAATGTATCGATACATGAACAGTG
19823 AT
1 AT
19825 TAATAGTGAT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (42 bp):
ATGTATCAATACTATTCACAATGTATCGATACATGAACAGTG
Found at i:24798 original size:21 final size:21
Alignment explanation
Indices: 24759--24812 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
24749 TACTTGCAAC
*
24759 TCATTTATTTTCTCCTCTAGT
1 TCATTTATTTTCTCCTCTAAT
**
24780 TCATTTATTTTCTTTTCTAAT
1 TCATTTATTTTCTCCTCTAAT
*
24801 TCACTTAATTTT
1 TCA-TTTATTTT
24813 TTTATCAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 21 0.75
22 7 0.25
ACGTcount: A:0.19, C:0.19, G:0.02, T:0.61
Consensus pattern (21 bp):
TCATTTATTTTCTCCTCTAAT
Found at i:30466 original size:21 final size:20
Alignment explanation
Indices: 30426--30464 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
30416 TTAAGTATAA
30426 ATATTTTTCAAGCATTAAATC
1 ATATTTTTCAA-CATTAAATC
30447 ATATGTTTTCAA-ATTAAA
1 ATAT-TTTTCAACATTAAA
30465 ATAACTCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 6 0.35
21 4 0.24
22 7 0.41
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (20 bp):
ATATTTTTCAACATTAAATC
Found at i:32106 original size:29 final size:29
Alignment explanation
Indices: 32064--32121 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
32054 AAACATATTA
32064 GTATGATGGTGAATGAAATAATACAACAT
1 GTATGATGGTGAATGAAATAATACAACAT
*
32093 GTATGATGGTGAATGAAATAATATAACAT
1 GTATGATGGTGAATGAAATAATACAACAT
32122 AGATCATTCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.05, G:0.21, T:0.29
Consensus pattern (29 bp):
GTATGATGGTGAATGAAATAATACAACAT
Found at i:35712 original size:13 final size:13
Alignment explanation
Indices: 35694--35719 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
35684 TACAGCAAGT
35694 ATGTATCGATACA
1 ATGTATCGATACA
35707 ATGTATCGATACA
1 ATGTATCGATACA
35720 CAAAAAATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:39785 original size:15 final size:15
Alignment explanation
Indices: 39765--39795 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
39755 TAAAAATGTC
*
39765 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
39780 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
39795 C
1 C
39796 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:41893 original size:13 final size:13
Alignment explanation
Indices: 41875--41900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
41865 CATTTTTTCT
41875 TTGTATCGATACA
1 TTGTATCGATACA
41888 TTGTATCGATACA
1 TTGTATCGATACA
41901 GGGTGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:49680 original size:20 final size:21
Alignment explanation
Indices: 49644--49682 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
49634 TATTATTATT
*
49644 TTTTAAATATAATAATAATTA
1 TTTTAAATATAAAAATAATTA
49665 TTTTAAA-ATAAAAATAAT
1 TTTTAAATATAAAAATAAT
49683 CATATAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
TTTTAAATATAAAAATAATTA
Found at i:56901 original size:19 final size:20
Alignment explanation
Indices: 56877--56930 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
56867 AGATAATGCT
**
56877 TTGTATCGATACATGTTC-A
1 TTGTATCGATACATGCACAA
56896 TTGTATCGATACATGCACAA
1 TTGTATCGATACATGCACAA
56916 TTGTATCGATACATG
1 TTGTATCGATACATG
56931 AAACTAGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGCACAA
Found at i:58624 original size:9 final size:9
Alignment explanation
Indices: 58589--58626 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
58579 AACCATCAAA
*
58589 GATAATGAA
1 GATAATGAT
58598 GATAATGAT
1 GATAATGAT
*
58607 GATGATGAT
1 GATAATGAT
58616 GATAATGAT
1 GATAATGAT
58625 GA
1 GA
58627 AGTTGACTCG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.26, T:0.29
Consensus pattern (9 bp):
GATAATGAT
Found at i:61837 original size:20 final size:19
Alignment explanation
Indices: 61791--61847 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
61781 TTGTATCAAT
* *
61791 ACATTGTTTCGATACATGT
1 ACATTGTATCGATACATGG
*
61810 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
61829 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
61848 AAACTGGCAG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.37
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:61914 original size:20 final size:20
Alignment explanation
Indices: 61876--61914 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
61866 CTACTACTAT
* *
61876 TTGTATCGATACATGGTATA
1 TTGTATAGATAAATGGTATA
*
61896 TTGTATAGATAAATTGTAT
1 TTGTATAGATAAATGGTAT
61915 CGATACATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.33, C:0.05, G:0.18, T:0.44
Consensus pattern (20 bp):
TTGTATAGATAAATGGTATA
Found at i:61932 original size:33 final size:33
Alignment explanation
Indices: 61876--61944 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
61866 CTACTACTAT
*
61876 TTGTATCGATACATGGTATATTGTATAGATAAA
1 TTGTATCGATACATGATATATTGTATAGATAAA
* *
61909 TTGTATCGATACATGATGA-ATTGTATCGATACA
1 TTGTATCGATACATGAT-ATATTGTATAGATAAA
61942 TTG
1 TTG
61945 CTTTTAACGG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 31 0.97
34 1 0.03
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.39
Consensus pattern (33 bp):
TTGTATCGATACATGATATATTGTATAGATAAA
Found at i:68301 original size:20 final size:20
Alignment explanation
Indices: 68263--68302 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
68253 TTACAAATTT
68263 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
68284 CTTCATGTTTCA-TCAAAAT
1 CTTCAT-TTTCACTCAAAAT
68303 CATCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 6 0.33
22 5 0.28
ACGTcount: A:0.33, C:0.23, G:0.03, T:0.42
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:70973 original size:33 final size:33
Alignment explanation
Indices: 70923--70997 Score: 105
Period size: 33 Copynumber: 2.3 Consensus size: 33
70913 TATGTCAGTT
* * **
70923 AAGTGAACTAAATTGCTCATCCATGTGCTGCGA
1 AAGTGAAGTAAAGTGCTCATCCATGCACTGCGA
*
70956 AAGTGAAGTAAAGTGCTCATCCATGCACTGTGA
1 AAGTGAAGTAAAGTGCTCATCCATGCACTGCGA
70989 AAGTGAAGT
1 AAGTGAAGT
70998 GATCAACTCT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.25
Consensus pattern (33 bp):
AAGTGAAGTAAAGTGCTCATCCATGCACTGCGA
Found at i:83003 original size:19 final size:19
Alignment explanation
Indices: 82979--83016 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
82969 TTTGTATCGA
82979 TTCATTGTATCGATACATG
1 TTCATTGTATCGATACATG
*
82998 TTCATTGTATTGATACATG
1 TTCATTGTATCGATACATG
83017 AAACTAGCAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (19 bp):
TTCATTGTATCGATACATG
Found at i:85041 original size:30 final size:31
Alignment explanation
Indices: 85000--85075 Score: 118
Period size: 31 Copynumber: 2.5 Consensus size: 31
84990 AGAACAATAT
*
85000 ATGTATTGATACATTCT-ATTTTTTACCCAA
1 ATGTATCGATACATTCTGATTTTTTACCCAA
* *
85030 ATGTATCGATACATTCTGTTTTTTTACCCAG
1 ATGTATCGATACATTCTGATTTTTTACCCAA
85061 ATGTATCGATACATT
1 ATGTATCGATACATT
85076 TTTCAATGTA
Statistics
Matches: 42, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
30 16 0.38
31 26 0.62
ACGTcount: A:0.28, C:0.17, G:0.11, T:0.45
Consensus pattern (31 bp):
ATGTATCGATACATTCTGATTTTTTACCCAA
Found at i:89153 original size:20 final size:20
Alignment explanation
Indices: 89130--89209 Score: 70
Period size: 20 Copynumber: 3.8 Consensus size: 20
89120 TGCATGGCAC
89130 ATTGTATCGATACATGATGA
1 ATTGTATCGATACATGATGA
* *
89150 ATTGTATCAATACATTGATTCAAA
1 ATTGTATCGATACA-TGA-T--GA
*
89174 CAATGTATCGATACATGATGA
1 -ATTGTATCGATACATGATGA
**
89195 ATTACATCGATACAT
1 ATTGTATCGATACAT
89210 TGCTTCAAAC
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
20 25 0.53
21 4 0.09
22 1 0.02
23 1 0.02
24 4 0.09
25 12 0.26
ACGTcount: A:0.39, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
ATTGTATCGATACATGATGA
Found at i:89196 original size:45 final size:45
Alignment explanation
Indices: 89132--89219 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
89122 CATGGCACAT
**
89132 TGTATCGATACATGATGAATTGTATCAATACATTGATTCAAACAA
1 TGTATCGATACATGATGAATTACATCAATACATTGATTCAAACAA
* *
89177 TGTATCGATACATGATGAATTACATCGATACATTGCTTCAAAC
1 TGTATCGATACATGATGAATTACATCAATACATTGATTCAAAC
89220 GGCTATAAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.33
Consensus pattern (45 bp):
TGTATCGATACATGATGAATTACATCAATACATTGATTCAAACAA
Found at i:89761 original size:37 final size:37
Alignment explanation
Indices: 89720--89793 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
89710 ACCTTTGCCT
89720 TAAAGGTAATCAGTTCTTGTAGTGAATTGGATAACCA
1 TAAAGGTAATCAGTTCTTGTAGTGAATTGGATAACCA
89757 TAAAGGTAATCAGTTCTTGTAGTGAATTGGATAACCA
1 TAAAGGTAATCAGTTCTTGTAGTGAATTGGATAACCA
89794 CTCGACGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.35, C:0.11, G:0.22, T:0.32
Consensus pattern (37 bp):
TAAAGGTAATCAGTTCTTGTAGTGAATTGGATAACCA
Found at i:90638 original size:20 final size:19
Alignment explanation
Indices: 90598--90638 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
90588 TTTAAAGAAA
*
90598 TTTTCTCTTTTTTTTTCTT
1 TTTTCTCTTTTTTTTGCTT
*
90617 TTTTCTTCTTTTTTTTGGTT
1 TTTTC-TCTTTTTTTTGCTT
90637 TT
1 TT
90639 CTCAATTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.00, C:0.12, G:0.05, T:0.83
Consensus pattern (19 bp):
TTTTCTCTTTTTTTTGCTT
Found at i:94802 original size:140 final size:139
Alignment explanation
Indices: 94394--94906 Score: 571
Period size: 140 Copynumber: 3.6 Consensus size: 139
94384 TTTTTGCAAC
* * * *
94394 CCTTTTTAAGTCCCTAAGAATCATCGGACACTTCTAAGTTGATGGTAAACCTTAAGGATATTTTA
1 CCTTTTCAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTT-AGGATATTTTA
* * * * *
94459 GCATTTTCCCCAAAACCTAATCTTATAAAATTA-TCAGGTTTGCTTCTATGCTGAAGGTATGAAA
65 GCATTTTCCCTAAAACCTAATCTTATAAAACTACT-AGGTCTGCTTCTACGCTGAAGGTATGAAT
* * *
94523 TAGGAATATCA
129 TAGGAGTGTTA
* * * * *
94534 CCTTGTCAAGTCCCTTAGGATCACCAGGCACTTCTAAGTCGATGGTAAACCTTAGAGATGTTTTA
1 CCTTTTCAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTTAG-GATATTTTA
* * * *
94599 GCATTTTCCCTAAAACCTAATCCTATAAAACTACTAGGTCTGTTTATACGCTAAAGGTATGAATT
65 GCATTTTCCCTAAAACCTAATCTTATAAAACTACTAGGTCTGCTTCTACGCTGAAGGTATGAATT
94664 AGGAGTGTTA
130 AGGAGTGTTA
* *
94674 CCTTTTTAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTGATGGATATTTTA
1 CCTTTTCAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTTA-GGATATTTTA
* * * *
94739 GCATTTTCCCTGAAACCTAATCTTATAAAACTACTGGGTCTACTTCTACGCCGAAGGTATGAATT
65 GCATTTTCCCTAAAACCTAATCTTATAAAACTACTAGGTCTGCTTCTACGCTGAAGGTATGAATT
*
94804 AGAAATGGGTTTGTTTTTA
130 AG----GAG--TG---TTA
* ** * * *
94823 CCTTTTCAAGTCCCATAGGGTCATTGGGTACTTCTAAGTCGATGGTAAATCTTAGGGATATTTTA
1 CCTTTTCAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTTA-GGATATTTTA
94888 GCATTTT-CCTCAAAACCTA
65 GCATTTTCCCT-AAAACCTA
94907 GCCCTATGAA
Statistics
Matches: 313, Mismatches: 47, Indels: 17
0.83 0.12 0.05
Matches are distributed among these distances:
139 2 0.01
140 229 0.73
141 2 0.01
144 2 0.01
146 2 0.01
148 3 0.01
149 73 0.23
ACGTcount: A:0.29, C:0.19, G:0.17, T:0.34
Consensus pattern (139 bp):
CCTTTTCAAGTCCCTTAGAATCATCGGGCACTTCTAAGTCGATGGTAAACCTTAGGATATTTTAG
CATTTTCCCTAAAACCTAATCTTATAAAACTACTAGGTCTGCTTCTACGCTGAAGGTATGAATTA
GGAGTGTTA
Found at i:97252 original size:60 final size:60
Alignment explanation
Indices: 97159--97276 Score: 209
Period size: 60 Copynumber: 2.0 Consensus size: 60
97149 GTCCAAAAAT
*
97159 ATGTTGAGACTAAGGCTATGAATGATTATTTGTTTTAATTTTTTATAGAAAAGAAGTAAA
1 ATGTTGAGACTAAGGCTATGAATGATTATTTGTTTTAATTTTGTATAGAAAAGAAGTAAA
* *
97219 ATGTTGAGACTAAGGCTATGAATGCTTGTTTGTTTTAATTTTGTATAGAAAAGAAGTA
1 ATGTTGAGACTAAGGCTATGAATGATTATTTGTTTTAATTTTGTATAGAAAAGAAGTA
97277 GATAATCAAC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (60 bp):
ATGTTGAGACTAAGGCTATGAATGATTATTTGTTTTAATTTTGTATAGAAAAGAAGTAAA
Found at i:97991 original size:15 final size:15
Alignment explanation
Indices: 97968--98013 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
97958 TTAAATAAAT
*
97968 TAATAATTATTTATA
1 TAATTATTATTTATA
97983 TAATTATTATTT-TA
1 TAATTATTATTTATA
97997 -AATATATTATTTATA
1 TAAT-TATTATTTATA
98012 TA
1 TA
98014 TTCATTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
13 3 0.11
14 10 0.37
15 13 0.48
16 1 0.04
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
TAATTATTATTTATA
Found at i:100655 original size:20 final size:20
Alignment explanation
Indices: 100630--100704 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
100620 ATACATTTTC
100630 AATGTATCGATACATGTATG
1 AATGTATCGATACATGTATG
100650 AATGTATCGATACATGTATG
1 AATGTATCGATACATGTATG
* * *
100670 AATGTATCGATATATTTTTG
1 AATGTATCGATACATGTATG
100690 AATGTATCGATACAT
1 AATGTATCGATACAT
100705 TCTGTCTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATGTATG
Found at i:101649 original size:19 final size:19
Alignment explanation
Indices: 101611--101653 Score: 54
Period size: 20 Copynumber: 2.3 Consensus size: 19
101601 CCTTTGATTA
101611 AGCATTTTTACTATGTTCC
1 AGCATTTTTACTATGTTCC
101630 ATGCATTTTTAAC-ATG-TCC
1 A-GCATTTTT-ACTATGTTCC
101649 AGCAT
1 AGCAT
101654 CTCATTGAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 11 0.50
21 2 0.09
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.42
Consensus pattern (19 bp):
AGCATTTTTACTATGTTCC
Found at i:103330 original size:79 final size:81
Alignment explanation
Indices: 103222--103421 Score: 253
Period size: 79 Copynumber: 2.5 Consensus size: 81
103212 AAAATTGGGA
* * * *
103222 TTAGAGTATCTCCTTGAAAATAACGGGGTTGGAGTATCC-CCAATTGTGGAAAATCAGTGTTTT-
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCCAA-TATGAAAAATCAGTGTTTTA
*
103285 G-AAAATAAAACCGAGG
65 GAAAAAAAAAACCGAGG
* * **
103301 TTAGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCTCGAATATGAAAAATTGGTGTTTTAG
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCCAATATGAAAAATCAGTGTTTTAG
*
103366 AAAAAAAAAATCGAGG
66 AAAAAAAAAACCGAGG
* * *
103382 TTGGAGTATCCCCTCAAAAATAATGGGGTTGGAGTATCCT
1 TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCT
103422 TTCGAAAATA
Statistics
Matches: 104, Mismatches: 14, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
79 51 0.49
80 4 0.04
81 49 0.47
ACGTcount: A:0.35, C:0.14, G:0.23, T:0.28
Consensus pattern (81 bp):
TTAGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCTCCAATATGAAAAATCAGTGTTTTAG
AAAAAAAAAACCGAGG
Found at i:103427 original size:109 final size:107
Alignment explanation
Indices: 103299--103529 Score: 259
Period size: 109 Copynumber: 2.1 Consensus size: 107
103289 ATAAAACCGA
** * * *
103299 GGTTAGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCTCGAAT-ATGAAAAATTGGTGTTT
1 GGTTAGAGTATCCTTTCGAAAATAACAGGGTTAGAGTACCCCCG-ATGATGAAAAATTGGTGTTT
* *
103363 TAGAAAAAAAAAAT-CGAGGTTGGAGTATCCCCTCAAAAATAATGG
65 T---AAAAAAAAATCCGAGGTTGAAGTATCCCCTCAAAAATAACGG
* * * * *
103408 GGTTGGAGTATCCTTTCGAAAATAACAGGGTTGGAGTACCCCCGATGGTGGAAGATTGGTGTTTT
1 GGTTAGAGTATCCTTTCGAAAATAACAGGGTTAGAGTACCCCCGATGATGAAAAATTGGTGTTTT
* * * *
103473 AAAAATAAATCCGGGGTTGAAGTATCCCGTCGAAAATAACGG
66 AAAAAAAAATCCGAGGTTGAAGTATCCCCTCAAAAATAACGG
*
103515 GGTAAGAGTATCCTT
1 GGTTAGAGTATCCTT
103530 GGTTGTGGAA
Statistics
Matches: 102, Mismatches: 18, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
106 9 0.09
107 39 0.38
108 2 0.02
109 52 0.51
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.26
Consensus pattern (107 bp):
GGTTAGAGTATCCTTTCGAAAATAACAGGGTTAGAGTACCCCCGATGATGAAAAATTGGTGTTTT
AAAAAAAAATCCGAGGTTGAAGTATCCCCTCAAAAATAACGG
Found at i:103429 original size:28 final size:28
Alignment explanation
Indices: 103380--103450 Score: 88
Period size: 28 Copynumber: 2.5 Consensus size: 28
103370 AAAAAATCGA
**
103380 GGTTGGAGTATCCCCTCAAAAATAATGG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
** *
103408 GGTTGGAGTATCCTTTCGAAAATAACAG
1 GGTTGGAGTATCCCCTCAAAAATAACAG
*
103436 GGTTGGAGTACCCCC
1 GGTTGGAGTATCCCC
103451 GATGGTGGAA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCTCAAAAATAACAG
Found at i:114767 original size:20 final size:20
Alignment explanation
Indices: 114742--114814 Score: 112
Period size: 20 Copynumber: 3.6 Consensus size: 20
114732 GTTGGGCATA
114742 ATGTATCGATACAATTCTTC
1 ATGTATCGATACAATTCTTC
114762 ATGTATCGATACAATTCTTC
1 ATGTATCGATACAATTCTTC
* *
114782 ATGTATTGATACAATGTC-CC
1 ATGTATCGATACAAT-TCTTC
114802 ATGTATCGATACA
1 ATGTATCGATACA
114815 TTTCACTTAG
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
20 47 0.96
21 2 0.04
ACGTcount: A:0.32, C:0.19, G:0.12, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATTCTTC
Found at i:114886 original size:19 final size:19
Alignment explanation
Indices: 114843--114898 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
114833 GTGCCAGTTT
*
114843 CATGTATTGATACAATTGAG
1 CATGTATCGATACAA-TGAG
*
114863 TATGTATCGATACAATGAG
1 CATGTATCGATACAATGAG
114882 CATGTATCGATACAATG
1 CATGTATCGATACAATG
114899 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
19 20 0.61
20 13 0.39
ACGTcount: A:0.36, C:0.12, G:0.20, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:114901 original size:13 final size:13
Alignment explanation
Indices: 114883--114908 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
114873 TACAATGAGC
114883 ATGTATCGATACA
1 ATGTATCGATACA
114896 ATGTATCGATACA
1 ATGTATCGATACA
114909 TCTGGGTGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:118210 original size:13 final size:13
Alignment explanation
Indices: 118192--118217 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
118182 ACAAAATTAA
118192 TAAAATATTTTTT
1 TAAAATATTTTTT
118205 TAAAATATTTTTT
1 TAAAATATTTTTT
118218 AGTTTCTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TAAAATATTTTTT
Found at i:119915 original size:14 final size:13
Alignment explanation
Indices: 119878--119929 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
119868 TCTAGAAGCG
*
119878 TAAAAATT-AATA
1 TAAAAATTAAATT
*
119890 AAAAAGATTAAATT
1 TAAAA-ATTAAATT
119904 GTAAAAATTAAAATT
1 -TAAAAATT-AAATT
119919 TAAAAATTAAA
1 TAAAAATTAAA
119930 ACAAAATTTG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
12 4 0.12
13 6 0.18
14 14 0.42
15 9 0.27
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (13 bp):
TAAAAATTAAATT
Found at i:119930 original size:14 final size:15
Alignment explanation
Indices: 119899--119930 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
119889 AAAAAAGATT
119899 AAATTGTAAAAATTA
1 AAATTGTAAAAATTA
119914 AAATT-TAAAAATTA
1 AAATTGTAAAAATTA
119928 AAA
1 AAA
119931 CAAAATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (15 bp):
AAATTGTAAAAATTA
Found at i:127333 original size:19 final size:20
Alignment explanation
Indices: 127292--127343 Score: 65
Period size: 19 Copynumber: 2.7 Consensus size: 20
127282 TTAATATATA
127292 CAAAA-AAATTAAAATTAAT
1 CAAAATAAATTAAAATTAAT
*
127311 -AAAATAAATTAAAATT-TT
1 CAAAATAAATTAAAATTAAT
127329 CAAAACTAAATTAAA
1 CAAAA-TAAATTAAA
127344 TGGGAATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 5 0.17
19 15 0.52
20 9 0.31
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.29
Consensus pattern (20 bp):
CAAAATAAATTAAAATTAAT
Found at i:127898 original size:167 final size:167
Alignment explanation
Indices: 127418--127917 Score: 634
Period size: 167 Copynumber: 3.0 Consensus size: 167
127408 ATATTTATGA
* * * *
127418 AATAGAAAACTCGATTTTTTGGAAA-AGGGAAATTTTAAAGAAAAAAATCT-AAAACTCATGAAA
1 AATAGAAAACTCGATATTTTGAAAACAGGGAAATTTCAAGGAAAAAAAT-TAAAAACTCATGAAA
*
127481 ATGAATTAATTTTTAAAAACTGATTTAATATGG-AATAAATAATAATATTTGATGAATTTAAAAA
65 ATGAATGAATTTTTAAAAACTGATTTAATA-GGAAATAAATAATAATATTTGATGAATTTAAAAA
* * * *
127545 GTTAAAAACTAAGAAAAATCCCCCCAAAAAAATTTACGG
129 ATTAAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGG
* * * ** * *
127584 AGTAGAAAACTCTATATTTCGAAAACAGAAAAATTTGAAGG-AAAAAATTCAAAAACTAATGAAA
1 AATAGAAAACTCGATATTTTGAAAACAGGGAAATTTCAAGGAAAAAAATT-AAAAACTCATGAAA
* * * * * *
127648 ATGAAGGAATTTTTGAAAATTAATTTAATGGGAAATAAATAATAATATTTGATGAATTTTAAAAA
65 ATGAATGAATTTTTAAAAACTGATTTAATAGGAAATAAATAATAATATTTGATGAATTTAAAAAA
*
127713 CTAAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGG
130 TTAAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGG
*
127751 AATAGAAAACTTC-ATATTTTGAAAACAGGGGAATTTCAAGGAAAAAAATTAAAAACTCATGAAA
1 AATAGAAAAC-TCGATATTTTGAAAACAGGGAAATTTCAAGGAAAAAAATTAAAAACTCATGAAA
* **
127815 ATGAATGAATTTTTTAAAACTGATTTAATAGGAAATAAATAATAATATTTTTTGAATTTAAAAAA
65 ATGAATGAATTTTTAAAAACTGATTTAATAGGAAATAAATAATAATATTTGATGAATTTAAAAAA
** * * *
127880 TTTTAAACCCATAAAAATCCTCCCG-AAAAATTCACGG
130 TTAAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGG
127917 A
1 A
127918 GAAAAAAATC
Statistics
Matches: 285, Mismatches: 43, Indels: 12
0.84 0.13 0.04
Matches are distributed among these distances:
165 1 0.00
166 41 0.14
167 233 0.82
168 10 0.04
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (167 bp):
AATAGAAAACTCGATATTTTGAAAACAGGGAAATTTCAAGGAAAAAAATTAAAAACTCATGAAAA
TGAATGAATTTTTAAAAACTGATTTAATAGGAAATAAATAATAATATTTGATGAATTTAAAAAAT
TAAAAACCAAGAAAAATCCTCCCGAAAAAATTTACGG
Found at i:129622 original size:21 final size:21
Alignment explanation
Indices: 129597--129648 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
129587 ATGGTTTAAA
* * *
129597 TTAAAATATCCCGAATAATGT
1 TTAAAAGATCCAGAAAAATGT
129618 TTAAAAGATCCAGAAAAATGT
1 TTAAAAGATCCAGAAAAATGT
129639 TTAAAAGATC
1 TTAAAAGATC
129649 TTAGTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.48, C:0.12, G:0.12, T:0.29
Consensus pattern (21 bp):
TTAAAAGATCCAGAAAAATGT
Found at i:132724 original size:3 final size:3
Alignment explanation
Indices: 132718--132750 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
132708 GTTGCACCGC
132718 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
132751 GTTCCCTCTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:134629 original size:10 final size:10
Alignment explanation
Indices: 134614--134671 Score: 50
Period size: 10 Copynumber: 6.0 Consensus size: 10
134604 ATTAAAATTT
134614 AAAATTTAAA
1 AAAATTTAAA
134624 AAAATTT--A
1 AAAATTTAAA
134632 AAAATTTAAA
1 AAAATTTAAA
*
134642 TATAA-TTAAA
1 -AAAATTTAAA
* **
134652 AATATAAAAA
1 AAAATTTAAA
134662 AAAATTTAAA
1 AAAATTTAAA
134672 CTAAAAAAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
8 8 0.22
9 2 0.06
10 23 0.64
11 3 0.08
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (10 bp):
AAAATTTAAA
Found at i:134637 original size:18 final size:18
Alignment explanation
Indices: 134607--134663 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
134597 TCATATCATT
134607 AAAATTT-AAAATTTAAA
1 AAAATTTAAAAATTTAAA
134624 AAAATTTAAAAATTTAAA
1 AAAATTTAAAAATTTAAA
* *
134642 TATAA-TTAAAAATATAAA
1 -AAAATTTAAAAATTTAAA
134660 AAAA
1 AAAA
134664 AATTTAAACT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
17 10 0.29
18 22 0.63
19 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
AAAATTTAAAAATTTAAA
Found at i:134715 original size:19 final size:19
Alignment explanation
Indices: 134672--134715 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
134662 AAAATTTAAA
*
134672 CTAAAAAAATCTAAAAAAT
1 CTAAAAAAACCTAAAAAAT
*
134691 -TCAAAAAACCCTAAAAAAT
1 CT-AAAAAAACCTAAAAAAT
134710 CTAAAA
1 CTAAAA
134716 CTTATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
18 1 0.05
19 19 0.90
20 1 0.05
ACGTcount: A:0.66, C:0.16, G:0.00, T:0.18
Consensus pattern (19 bp):
CTAAAAAAACCTAAAAAAT
Found at i:134777 original size:20 final size:21
Alignment explanation
Indices: 134742--134780 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
134732 TAGAATTTTA
134742 AAAATATATATTAAAATATTG
1 AAAATATATATTAAAATATTG
*
134763 AAAATAT-TGTTAAAATAT
1 AAAATATATATTAAAATAT
134781 ATAATTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.38
Consensus pattern (21 bp):
AAAATATATATTAAAATATTG
Found at i:134972 original size:25 final size:23
Alignment explanation
Indices: 134928--134973 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
134918 ACATCGATCC
*
134928 AGAGAAGTGAAAAAGAAAAGGAA
1 AGAGAAGGGAAAAAGAAAAGGAA
*
134951 AGAGAGAGGGAAAAGAGGAAAGG
1 AGAGA-AGGGAAAA-AGAAAAGG
134974 GCTATTTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 5 0.26
24 7 0.37
25 7 0.37
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.02
Consensus pattern (23 bp):
AGAGAAGGGAAAAAGAAAAGGAA
Found at i:135255 original size:22 final size:22
Alignment explanation
Indices: 135229--135293 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 22
135219 ACCTTTCGGA
135229 CCCTTTTCCTTTC-TCTTCCCTT
1 CCCTTTTCCTTTCTTC-TCCCTT
* *
135251 CCCTTCTACTTTCTTCTCCCTT
1 CCCTTTTCCTTTCTTCTCCCTT
*
135273 CCCTTCTTCCTTTCCTCTCCC
1 CCCTT-TTCCTTTCTTCTCCC
135294 ATCATCTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
22 22 0.61
23 14 0.39
ACGTcount: A:0.02, C:0.49, G:0.00, T:0.49
Consensus pattern (22 bp):
CCCTTTTCCTTTCTTCTCCCTT
Found at i:135351 original size:16 final size:15
Alignment explanation
Indices: 135318--135355 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
135308 TTTTTTTTCA
135318 AATTTTATTTTTTGT
1 AATTTTATTTTTTGT
135333 AATTCTTATTTTTAT-T
1 AATT-TTATTTTT-TGT
135349 AATTTTA
1 AATTTTA
135356 ATTATATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
15 7 0.33
16 13 0.62
17 1 0.05
ACGTcount: A:0.26, C:0.03, G:0.03, T:0.68
Consensus pattern (15 bp):
AATTTTATTTTTTGT
Found at i:135469 original size:18 final size:18
Alignment explanation
Indices: 135448--135514 Score: 52
Period size: 18 Copynumber: 3.7 Consensus size: 18
135438 CTTTTTGAAT
135448 TTTTTATAATTTTATAAC
1 TTTTTATAATTTTATAAC
*
135466 TTTTTAT-TTTTTATTATTA-
1 TTTTTATAATTTTA-TA--AC
*
135485 TTTTTA-AATTTTATTAC
1 TTTTTATAATTTTATAAC
135502 -TTTTATATATTTT
1 TTTTTATA-ATTTT
135515 GAATTTTTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 14
0.70 0.05 0.25
Matches are distributed among these distances:
16 6 0.15
17 6 0.15
18 15 0.38
19 11 0.28
20 1 0.03
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTTTATAATTTTATAAC
Found at i:135476 original size:26 final size:24
Alignment explanation
Indices: 135447--135528 Score: 74
Period size: 26 Copynumber: 3.2 Consensus size: 24
135437 TCTTTTTGAA
135447 TTTTTTATAATTTTATAACTTTTTATT
1 TTTTTTATAATTTT-TAA-TTTTTA-T
* *
135474 TTTTATTATTATTTTTAAATTTTAT
1 TTTT-TTATAATTTTTAATTTTTAT
* *
135499 TACTTTTATATATTTTGAATTTTTAT
1 T-TTTTTATA-ATTTTTAATTTTTAT
135525 TTTT
1 TTTT
135529 ATTTTTTATA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
25 8 0.18
26 21 0.47
27 7 0.16
28 9 0.20
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.71
Consensus pattern (24 bp):
TTTTTTATAATTTTTAATTTTTAT
Found at i:135478 original size:7 final size:7
Alignment explanation
Indices: 135466--135543 Score: 52
Period size: 7 Copynumber: 10.7 Consensus size: 7
135456 ATTTTATAAC
135466 TTTTTAT
1 TTTTTAT
135473 TTTTTA-
1 TTTTTAT
*
135479 TTATTAT
1 TTTTTAT
*
135486 TTTTAAAT
1 TTTT-TAT
135494 TTTATTACT
1 TTT-TTA-T
*
135503 TTTATAT
1 TTTTTAT
* *
135510 ATTTTGAA
1 -TTTTTAT
135518 TTTTTA-
1 TTTTTAT
135524 TTTTTAT
1 TTTTTAT
135531 TTTTTAT
1 TTTTTAT
135538 ATTTTT
1 -TTTTT
135544 GAATTTAAAA
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
6 11 0.20
7 22 0.40
8 17 0.31
9 5 0.09
ACGTcount: A:0.23, C:0.01, G:0.01, T:0.74
Consensus pattern (7 bp):
TTTTTAT
Found at i:135496 original size:36 final size:39
Alignment explanation
Indices: 135448--135538 Score: 107
Period size: 39 Copynumber: 2.4 Consensus size: 39
135438 CTTTTTGAAT
*
135448 TTTTTATAATTTTATAACTTTT-TAT-TTTT-TATTATTA
1 TTTTTA-AATTTTATAACTTTTATATATTTTGAATTATTA
* *
135485 TTTTTAAATTTTATTACTTTTATATATTTTGAATTTTTA
1 TTTTTAAATTTTATAACTTTTATATATTTTGAATTATTA
**
135524 TTTTTATTTTTTATA
1 TTTTTAAATTTTATA
135539 TTTTTGAATT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
36 14 0.31
37 9 0.20
38 4 0.09
39 18 0.40
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.70
Consensus pattern (39 bp):
TTTTTAAATTTTATAACTTTTATATATTTTGAATTATTA
Found at i:135506 original size:45 final size:46
Alignment explanation
Indices: 135439--135534 Score: 115
Period size: 45 Copynumber: 2.1 Consensus size: 46
135429 TTAATAATTC
* * * *
135439 TTTTTGAATTTTTTATAATTTTATA-ACTTTTTATTTTTTATTATTA
1 TTTTTAAATTTTATATAATTTTATATA-TTTTGAATTTTTATTATTA
* *
135485 TTTTTAAATTTTAT-TACTTTTATATATTTTGAATTTTTATTTTTA
1 TTTTTAAATTTTATATAATTTTATATATTTTGAATTTTTATTATTA
135530 TTTTT
1 TTTTT
135535 TATATTTTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
45 30 0.70
46 13 0.30
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.71
Consensus pattern (46 bp):
TTTTTAAATTTTATATAATTTTATATATTTTGAATTTTTATTATTA
Found at i:135564 original size:29 final size:30
Alignment explanation
Indices: 135486--135570 Score: 77
Period size: 28 Copynumber: 2.9 Consensus size: 30
135476 TTATTATTAT
**
135486 TTTTAAATTTTATTACTTTTATATATTTTGAA
1 TTTTAAAAATTATT-CTTTTATAT-TTTTGAA
* ***
135518 TTTTTATTTTTATT-TTTTATATTTTTGAA
1 TTTTAAAAATTATTCTTTTATATTTTTGAA
135547 -TTTAAAAATTATTCTTTTAT-TTTT
1 TTTTAAAAATTATTCTTTTATATTTT
135571 GTTTACTTGG
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
28 13 0.28
29 13 0.28
30 8 0.17
32 12 0.26
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (30 bp):
TTTTAAAAATTATTCTTTTATATTTTTGAA
Found at i:136086 original size:30 final size:30
Alignment explanation
Indices: 136036--136099 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
136026 TTTAAAAATG
* *
136036 AAAAATAAAAACATAATTAAAAAT-ATTAT
1 AAAAATAAAAACAAAATTAAAAATAATAAT
136065 AAAAATTAAAAA-AAAATTTAAAAATAATAAT
1 AAAAA-TAAAAACAAAA-TTAAAAATAATAAT
136096 AAAA
1 AAAA
136100 TTCTAGAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 8 0.27
30 14 0.47
31 8 0.27
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.25
Consensus pattern (30 bp):
AAAAATAAAAACAAAATTAAAAATAATAAT
Found at i:136177 original size:23 final size:23
Alignment explanation
Indices: 136151--136199 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 23
136141 ATTTATTCTT
136151 TATAT-AATA-AAAATTACATAATG
1 TATATAAATATAAAATTA-AT-ATG
136174 TATATAAATATAAAATTAATATG
1 TATATAAATATAAAATTAATATG
136197 TAT
1 TAT
136200 TATATGATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
23 11 0.46
24 6 0.25
25 7 0.29
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (23 bp):
TATATAAATATAAAATTAATATG
Found at i:136203 original size:24 final size:26
Alignment explanation
Indices: 136150--136204 Score: 73
Period size: 25 Copynumber: 2.2 Consensus size: 26
136140 TATTTATTCT
136150 TTATATAATAAAAATTACATAATGTA
1 TTATATAATAAAAATTACATAATGTA
136176 -TATA-AATATAAAATTA-AT-ATGTA
1 TTATATAATA-AAAATTACATAATGTA
136199 TTATAT
1 TTATAT
136205 GATTGAAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
23 5 0.19
24 10 0.38
25 11 0.42
ACGTcount: A:0.53, C:0.02, G:0.04, T:0.42
Consensus pattern (26 bp):
TTATATAATAAAAATTACATAATGTA
Found at i:139064 original size:17 final size:17
Alignment explanation
Indices: 139044--139085 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
139034 ATATAAAAGT
*
139044 AATATTTATATATTTTA
1 AATATTTATATATATTA
* *
139061 AATATATAAATATATTA
1 AATATTTATATATATTA
139078 AA-ATTTAT
1 AATATTTAT
139086 TAAATATATA
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATATTTATATATATTA
Found at i:139073 original size:19 final size:20
Alignment explanation
Indices: 139051--139094 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
139041 AGTAATATTT
*
139051 ATATATTTTAAATATA-TAA
1 ATATATTTAAAATATATTAA
*
139070 ATATA-TTAAAATTTATTAA
1 ATATATTTAAAATATATTAA
139089 ATATAT
1 ATATAT
139095 AATATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
18 8 0.38
19 13 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (20 bp):
ATATATTTAAAATATATTAA
Found at i:139075 original size:27 final size:27
Alignment explanation
Indices: 139027--139108 Score: 80
Period size: 27 Copynumber: 3.0 Consensus size: 27
139017 TAATTAAACA
* *
139027 TATTATAATATAAAAGTAATATTTATATAT
1 TATTA-AATATATAA-T-ATATTTAAATAT
*
139057 T-TTAAATATATAAATATATTAAAAT-T
1 TATTAAATATAT-AATATATTTAAATAT
139083 TATTAAATATATAATAT-TTTAAATAT
1 TATTAAATATATAATATATTTAAATAT
139109 AGTAATTACA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
25 6 0.13
26 8 0.18
27 18 0.40
28 7 0.16
29 5 0.11
30 1 0.02
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (27 bp):
TATTAAATATATAATATATTTAAATAT
Found at i:139081 original size:10 final size:9
Alignment explanation
Indices: 139014--139109 Score: 60
Period size: 9 Copynumber: 10.8 Consensus size: 9
139004 AATAAAATAA
139014 AAATA-ATT
1 AAATATATT
*
139022 AAACATATT
1 AAATATATT
139031 ATAATATA--
1 A-AATATATT
139039 AAAGTAATATTT
1 AAA-T-ATA-TT
* *
139051 ATATATTTT
1 AAATATATT
139060 AAATATA-T
1 AAATATATT
139068 AAATATATT
1 AAATATATT
*
139077 AAAATTTATT
1 -AAATATATT
139087 AAATATA-T
1 AAATATATT
*
139095 -AATATTTT
1 AAATATATT
139103 AAATATA
1 AAATATA
139110 GTAATTACAT
Statistics
Matches: 67, Mismatches: 10, Indels: 21
0.68 0.10 0.21
Matches are distributed among these distances:
7 7 0.10
8 16 0.24
9 26 0.39
10 15 0.22
11 1 0.01
12 2 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (9 bp):
AAATATATT
Found at i:139363 original size:2 final size:2
Alignment explanation
Indices: 139356--139387 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
139346 GCAAATGCAA
139356 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
139388 TTAGCATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:146318 original size:15 final size:16
Alignment explanation
Indices: 146284--146325 Score: 61
Period size: 15 Copynumber: 2.8 Consensus size: 16
146274 GAATAAATCA
146284 AAAATTGTTGAAAATG
1 AAAATTGTTGAAAATG
*
146300 -AAATTCTTGAAAA-G
1 AAAATTGTTGAAAATG
146314 AAAATTGTTGAA
1 AAAATTGTTGAA
146326 CTAGAAAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 1 0.04
15 22 0.96
ACGTcount: A:0.50, C:0.02, G:0.17, T:0.31
Consensus pattern (16 bp):
AAAATTGTTGAAAATG
Found at i:154673 original size:1 final size:1
Alignment explanation
Indices: 154663--154758 Score: 84
Period size: 1 Copynumber: 96.0 Consensus size: 1
154653 TGGCAATTGG
* * * ** * * * **
154663 AAAAAGAAAAAAACAAAACAAAAAAAAAGGAAAAAGAAAAAAAAAACAAAACAAAAAAAAAGGAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* *
154728 AAAGAAAAAAAAAAAAACAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
154759 GTGAAGATTT
Statistics
Matches: 75, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.88, C:0.05, G:0.07, T:0.00
Consensus pattern (1 bp):
A
Found at i:154711 original size:33 final size:32
Alignment explanation
Indices: 154661--154754 Score: 158
Period size: 33 Copynumber: 3.0 Consensus size: 32
154651 CATGGCAATT
154661 GGAAAAAG--AAAAAAACAAAACAAAAAAAAA
1 GGAAAAAGAAAAAAAAACAAAACAAAAAAAAA
154691 GGAAAAAGAAAAAAAAAACAAAACAAAAAAAAA
1 GGAAAAAG-AAAAAAAAACAAAACAAAAAAAAA
154724 GGAAAAAGAAAAAAAAA-AAAACAAAAAAAAA
1 GGAAAAAGAAAAAAAAACAAAACAAAAAAAAA
154755 AAAAGTGAAG
Statistics
Matches: 61, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
30 8 0.13
31 14 0.23
32 9 0.15
33 30 0.49
ACGTcount: A:0.85, C:0.05, G:0.10, T:0.00
Consensus pattern (32 bp):
GGAAAAAGAAAAAAAAACAAAACAAAAAAAAA
Found at i:159946 original size:79 final size:79
Alignment explanation
Indices: 159863--160016 Score: 238
Period size: 79 Copynumber: 1.9 Consensus size: 79
159853 TAAAATCAAA
* * * *
159863 GTTGGAGTATCC-CTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACTGGGGGTGGAGTATCCC
1 GTTGGAGTATCCTC-GATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGGTGGAGTATCCC
159927 CTCGAAAATAATAGG
65 CTCGAAAATAATAGG
*
159942 GTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCC
1 GTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGGTGGAGTATCCCC
*
160007 TCGGAAATAA
66 TCGAAAATAA
160017 AAGCATGAAT
Statistics
Matches: 68, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
79 67 0.99
80 1 0.01
ACGTcount: A:0.31, C:0.13, G:0.27, T:0.29
Consensus pattern (79 bp):
GTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGGGGTGGAGTATCCCC
TCGAAAATAATAGG
Found at i:159971 original size:130 final size:128
Alignment explanation
Indices: 159735--160006 Score: 337
Period size: 130 Copynumber: 2.1 Consensus size: 128
159725 AAATAACGGG
* *
159735 GTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAAAAAAAAACTGGGGTTGAGTATCTCCTC
1 GTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAAAAAAAAACTGGGGTGGAGTATCCCCTC
* * * *
159800 GAAAATAACGGGGTCGGAGTATCCCCGATTATGGAAGATCGATATTTTGAAAATAAAATCAAA
66 GAAAATAACAGGGTCGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAACCAAA
** * * * * *
159863 GTTGGAGTATCCCTGATTGTGAAAAATTGGTGTTTTGGAAATAAAACTGGGGGTGGAGTATCCCC
1 GTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTT-AAAAAAAAACT-GGGGTGGAGTATCCCC
* * * * * ***
159928 TCGAAAATAATAGGGTTGGAGTATCCTCGATTGTGAAAAATCGATGTTTTGAAAATAAAACCGGG
64 TCGAAAATAACAGGGTCGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAACCAAA
159993 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
160007 TCGGAAATAA
Statistics
Matches: 120, Mismatches: 22, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
128 31 0.26
129 9 0.08
130 80 0.67
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (128 bp):
GTTGGAGTATCCCCAATGGTGAAAAATCGATGTTTTAAAAAAAAACTGGGGTGGAGTATCCCCTC
GAAAATAACAGGGTCGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAACCAAA
Found at i:162389 original size:20 final size:20
Alignment explanation
Indices: 162344--162415 Score: 123
Period size: 20 Copynumber: 3.8 Consensus size: 20
162334 AAAGTGCCTG
162344 AATGTATCGATACATT--GA
1 AATGTATCGATACATTGAGA
162362 AA-GTATCGATACATTGAGA
1 AATGTATCGATACATTGAGA
162381 AATGTATCGATACATTGAGA
1 AATGTATCGATACATTGAGA
162401 AATGTATCGATACAT
1 AATGTATCGATACAT
162416 CTGGGTAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 4
0.93 0.00 0.07
Matches are distributed among these distances:
17 13 0.25
18 2 0.04
19 4 0.08
20 32 0.63
ACGTcount: A:0.40, C:0.11, G:0.18, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAGA
Found at i:162437 original size:30 final size:29
Alignment explanation
Indices: 162401--162539 Score: 89
Period size: 20 Copynumber: 5.3 Consensus size: 29
162391 TACATTGAGA
162401 AATGTATCGATACATCTGGGTAAAACCCAG
1 AATGTATCGATACAT-TGGGTAAAACCCAG
* *
162431 AATGTATCGATA-A---AGT-GAA---A-
1 AATGTATCGATACATTGGGTAAAACCCAG
162451 AATGTATCGATACATTTGGGTAAAACCCAG
1 AATGTATCGATACA-TTGGGTAAAACCCAG
*
162481 AATGTATCGATACAAT--G----A---AG
1 AATGTATCGATACATTGGGTAAAACCCAG
* *
162501 AATGTATCGATACATTTGGTAAAACCTAG
1 AATGTATCGATACATTGGGTAAAACCCAG
162530 AATGTATCGA
1 AATGTATCGA
162540 GACAATGAAG
Statistics
Matches: 84, Mismatches: 6, Indels: 39
0.65 0.05 0.30
Matches are distributed among these distances:
20 29 0.35
21 2 0.02
22 1 0.01
23 1 0.01
24 2 0.02
25 4 0.05
26 3 0.04
27 1 0.01
29 15 0.18
30 26 0.31
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.27
Consensus pattern (29 bp):
AATGTATCGATACATTGGGTAAAACCCAG
Found at i:162545 original size:49 final size:49
Alignment explanation
Indices: 162381--162612 Score: 306
Period size: 49 Copynumber: 4.7 Consensus size: 49
162371 TACATTGAGA
* *
162381 AATGTATCGATACATTG-AGAAATGTATCGATACATCTGGGTAAAACCCAG
1 AATGTATCGATACAATGAAG-AATGTATCGATACAT-TTGGTAAAACCCAG
*
162431 AATGTATCGATA-AAGTGAAAAATGTATCGATACATTTGGGTAAAACCCAG
1 AATGTATCGATACAA-TGAAGAATGTATCGATACATTT-GGTAAAACCCAG
*
162481 AATGTATCGATACAATGAAGAATGTATCGATACATTTGGTAAAACCTAG
1 AATGTATCGATACAATGAAGAATGTATCGATACATTTGGTAAAACCCAG
* * ***
162530 AATGTATCGAGACAATGAAGAATGTATCAATACATTTGGTAAAATGTAG
1 AATGTATCGATACAATGAAGAATGTATCGATACATTTGGTAAAACCCAG
* * *
162579 AATGTATCGAGATAATGAAGAATGTATTGATACA
1 AATGTATCGATACAATGAAGAATGTATCGATACA
162613 AATTGTGAAA
Statistics
Matches: 166, Mismatches: 12, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
49 89 0.54
50 74 0.45
51 3 0.02
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.28
Consensus pattern (49 bp):
AATGTATCGATACAATGAAGAATGTATCGATACATTTGGTAAAACCCAG
Found at i:163305 original size:60 final size:62
Alignment explanation
Indices: 163121--163422 Score: 414
Period size: 62 Copynumber: 4.9 Consensus size: 62
163111 TGGAAAGGTT
* * *
163121 TGCCACCAACTCGTGGGGGTTTTGAAAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAGGG
1 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAAGGG
* *
163183 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAAGATTAAAGGG
1 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAAGGG
* * * * *
163245 TGCCATCAACTCGTGTTGGCCTTG-AAA-AAAAAGGCATCCTGCTCTTTGAGGACTAAAGGG
1 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAAGGG
* *
163305 TGCCACCAACTCGTGTGGGCTTTG-AAA-AAAAAGGCGTTCTACTCTTTAAGGACTAAAGGG
1 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAAGGG
* ** * * *
163365 TGCCATCAACTCGACTTGGCTTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAA
1 TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAA
163423 GGAAAAATGA
Statistics
Matches: 211, Mismatches: 27, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
60 102 0.48
61 6 0.03
62 103 0.49
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (62 bp):
TGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAAGGCGTCCTACTCTTTGAGGACTAAAGGG
Found at i:163398 original size:122 final size:124
Alignment explanation
Indices: 163141--163422 Score: 448
Period size: 122 Copynumber: 2.3 Consensus size: 124
163131 TCGTGGGGGT
** *
163141 TTTGAAAAGAAAAAGGTGTCCTACTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT
1 TTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT
* **
163206 GAAAAGAAAAAGGCGTCCTACTCTTTGAAGATTAAAGGGTGCCATCAACTCGTGTTGGC
66 GAAAAGAAAAAGGCGTCCTACTCTTTGAAGACTAAAGGGTGCCATCAACTCGACTTGGC
*
163265 CTTG-AAA-AAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT
1 TTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT
*
163328 G-AAA-AAAAAGGCGTTCTACTCTTT-AAGGACTAAAGGGTGCCATCAACTCGACTTGGC
66 GAAAAGAAAAAGGCGTCCTACTCTTTGAA-GACTAAAGGGTGCCATCAACTCGACTTGGC
163385 TTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAA
1 TTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAA
163423 GGAAAAATGA
Statistics
Matches: 146, Mismatches: 9, Indels: 8
0.90 0.06 0.05
Matches are distributed among these distances:
119 2 0.01
120 49 0.34
121 6 0.04
122 83 0.57
123 3 0.02
124 3 0.02
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (124 bp):
TTTGAAAAGAAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGCCACCAACTCGTGTGGGCTTT
GAAAAGAAAAAGGCGTCCTACTCTTTGAAGACTAAAGGGTGCCATCAACTCGACTTGGC
Found at i:163533 original size:42 final size:41
Alignment explanation
Indices: 163389--163551 Score: 143
Period size: 43 Copynumber: 4.0 Consensus size: 41
163379 CTTGGCTTTG
* *
163389 AAAAG-AA-AAAG-GCATCCTGCTCTTTGAGGACTAAGGAA
1 AAAAGAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAA
* * * * * *
163427 AAATGAGATAAAATGCGTCCTACTCTTTGAGGACAAAGGAAA
1 AAAAGAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAG-AA
* **
163469 AGAAAGAAATTAAGTGTGTCCTGCTCTTTGAGGACAAAAGAGA
1 A-AAAGAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGA-A
* * *
163512 AAAGGAAATAAAGTGCATCCTGCTTTTTAAGGACTAAAAG
1 AAAAGAAATAAAGTGCATCCTGCTCTTTGAGGAC-AAAAG
163552 GTGCCACCAA
Statistics
Matches: 99, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
38 4 0.04
39 1 0.01
40 3 0.03
41 22 0.22
42 31 0.31
43 38 0.38
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (41 bp):
AAAAGAAATAAAGTGCATCCTGCTCTTTGAGGACAAAAGAA
Found at i:163663 original size:61 final size:61
Alignment explanation
Indices: 163529--163982 Score: 547
Period size: 61 Copynumber: 7.4 Consensus size: 61
163519 ATAAAGTGCA
* * * * **
163529 TCCTGCTTTTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGA-AA-ACG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
* * * * * *
163588 TCCTGCTGTTTGAGGACTCAAAGTTGCCACCAACTTTTGTGGGGTTTAAAAAGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
*
163649 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
* * **
163710 TCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
* ** *
163771 TTCTGCTCTTTGAGGACTGAAAGGTGCCTTCAACTTGTGTGGGCTTTAAAAGGAAAAGGGAAAGT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG---A--GAAGGT
163836 G
61 G
* * * **
163837 TCCTGCTCTTTGGGGACT-AGAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAAGCA
1 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
* * * *
163898 ACCTGCTCTTTGAGGACTGGAAA-TTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTA
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
163959 TCCTGCTCTTTGAGGACTGAAAGG
1 TCCTGCTCTTTGAGGACTGAAAGG
163983 ATAAAAGGTT
Statistics
Matches: 338, Mismatches: 46, Indels: 20
0.84 0.11 0.05
Matches are distributed among these distances:
59 46 0.14
60 6 0.02
61 231 0.68
62 2 0.01
63 2 0.01
64 1 0.00
65 1 0.00
66 49 0.14
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGTG
Found at i:163887 original size:188 final size:183
Alignment explanation
Indices: 163526--163982 Score: 591
Period size: 188 Copynumber: 2.5 Consensus size: 183
163516 GAAATAAAGT
* * * *
163526 GCATCCTGCT-TTTTAAGGACTAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAA--CG
1 GCATCCTGCTCTTTGAA-GACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
* * * * * *
163588 TCCTGCTGTTTGAGGACTCAAAGTTGCCACCAACTTTTGTGGGGTTTAAAAAGAGAAGGTGTCCT
65 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGTGTCCT
*
163653 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAG
130 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAA
**
163707 GTGTCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
* ** *
163772 TCTGCTCTTTGAGGACTGAAAGGTGCCTTCAACTTGTGTGGGCTTTAAAAGGAAAAGGGAAAGTG
66 CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT---A--AAAAGAGAAAGTG
* * *
163837 TCCTGCTCTTTGGGGACT-AGAAGGTGCCACTAACTTGTGTGGGCTTTAAAAGGAGAAA
126 TCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAA
* * * *
163895 GCAACCTGCTCTTTGAGGACTGGAAA-TTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGTA
1 GCATCCTGCTCTTTGAAGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCA
163959 TCCTGCTCTTTGAGGACTGAAAGG
65 TCCTGCTCTTTGAGGACTGAAAGG
163983 ATAAAAGGTT
Statistics
Matches: 239, Mismatches: 27, Indels: 13
0.86 0.10 0.05
Matches are distributed among these distances:
181 49 0.21
182 5 0.02
183 40 0.17
186 1 0.00
187 1 0.00
188 139 0.58
189 4 0.02
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (183 bp):
GCATCCTGCTCTTTGAAGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
CCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGAGAAAGTGTCCTG
CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAA
Found at i:164945 original size:8 final size:8
Alignment explanation
Indices: 164934--164963 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
164924 TCTTTTCTCA
164934 TTTTTCTT
1 TTTTTCTT
164942 TTTTTCTT
1 TTTTTCTT
164950 TTTTTCTCT
1 TTTTTCT-T
164959 TTTTT
1 TTTTT
164964 TGTCGTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 15 0.71
9 6 0.29
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTCTT
Found at i:164959 original size:10 final size:9
Alignment explanation
Indices: 164918--164975 Score: 55
Period size: 10 Copynumber: 6.1 Consensus size: 9
164908 CTTAAGTAGG
164918 TTCTTTTCTT
1 TTCTTTT-TT
**
164928 TTCTCATTT
1 TTCTTTTTT
164937 TTC-TTTTT
1 TTCTTTTTT
164945 TTCTTTTTT
1 TTCTTTTTT
164954 TCTCTTTTTT
1 T-TCTTTTTT
164964 TGTCGTTTTTT
1 T-TC-TTTTTT
164975 T
1 T
164976 GTGTTTCGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
8 6 0.15
9 11 0.28
10 16 0.40
11 7 0.17
ACGTcount: A:0.02, C:0.16, G:0.03, T:0.79
Consensus pattern (9 bp):
TTCTTTTTT
Found at i:164972 original size:11 final size:10
Alignment explanation
Indices: 164940--164996 Score: 55
Period size: 10 Copynumber: 5.6 Consensus size: 10
164930 CTCATTTTTC
164940 TTTTTT-TCT
1 TTTTTTGTCT
*
164949 TTTTTTCTCT
1 TTTTTTGTCT
164959 TTTTTTGTCGT
1 TTTTTTGTC-T
*
164970 TTTTTTGTGT
1 TTTTTTGTCT
164980 TTCGTTTTGT-T
1 TT--TTTTGTCT
164991 TTTTTT
1 TTTTTT
164997 TTGAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 10 0.24
10 14 0.33
11 12 0.29
12 6 0.14
ACGTcount: A:0.00, C:0.09, G:0.11, T:0.81
Consensus pattern (10 bp):
TTTTTTGTCT
Found at i:166232 original size:19 final size:21
Alignment explanation
Indices: 166188--166239 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
166178 TTCAATAATT
*
166188 TGTATCGATACATTCAGTACA
1 TGTATCGATACATTAAGTACA
166209 TGTATCGATACA-TAAGTA-A
1 TGTATCGATACATTAAGTACA
166228 TGTATCGATACA
1 TGTATCGATACA
166240 GTGTATCGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 13 0.43
20 5 0.17
21 12 0.40
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTACA
Found at i:166326 original size:82 final size:82
Alignment explanation
Indices: 166209--166385 Score: 309
Period size: 82 Copynumber: 2.2 Consensus size: 82
166199 ATTCAGTACA
* *
166209 TGTATCGATACATAAGTAATGTATCGATACAGTGTATCGCTACAAAGCTATTGCCAAGGAAATGT
1 TGTATCGATACATAAGTAATGTATCGATACAGTGTATCGCTACAAAGCTACTACCAAGGAAATGT
*
166274 ATCGATACATCAATCTT
66 ATCAATACATCAATCTT
*
166291 TGTATCGATACATAAGTAATGTATCGATATAGTGTATCGCTACAAAGCTACTACCAAGGAAATGT
1 TGTATCGATACATAAGTAATGTATCGATACAGTGTATCGCTACAAAGCTACTACCAAGGAAATGT
*
166356 ATCAATACATCGATCTT
66 ATCAATACATCAATCTT
166373 TGTATCGATACAT
1 TGTATCGATACAT
166386 CTAGGAAGTT
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 90 1.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (82 bp):
TGTATCGATACATAAGTAATGTATCGATACAGTGTATCGCTACAAAGCTACTACCAAGGAAATGT
ATCAATACATCAATCTT
Found at i:168791 original size:51 final size:49
Alignment explanation
Indices: 168725--168953 Score: 252
Period size: 51 Copynumber: 4.6 Consensus size: 49
168715 AAGTTTCTCA
* * * *
168725 AATTTT-CATAATCGGGGGTACTCCAACCCCGGTTTTATTCCTAAAACACT
1 AATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATT-C-AAAACACC
*
168775 AATTTTCCACAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAACCCCGATTTTA--TTCAAAACACC
*
168826 AATTTTCCACAATCGGGGATACTCCAACCCCG--GTT-TTCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTCAAAACACC
* * * * *
168872 AATTTTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAACACTG
1 AATTTTCCACAATCGGGGATACTCCAACCCCGATTTTA-TT-CAAAACAC-C
*
168924 ACTTTT-CACAATCGGGGATACTCCAACCCC
1 AATTTTCCACAATCGGGGATACTCCAACCCC
168954 ATTATTTTCG
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
46 39 0.26
48 2 0.01
49 2 0.01
50 8 0.05
51 93 0.61
52 6 0.04
53 2 0.01
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (49 bp):
AATTTTCCACAATCGGGGATACTCCAACCCCGATTTTATTCAAAACACC
Found at i:168893 original size:97 final size:101
Alignment explanation
Indices: 168725--168953 Score: 324
Period size: 97 Copynumber: 2.3 Consensus size: 101
168715 AAGTTTCTCA
* * *
168725 AATTTTCATAATCGGGGGTACTCCAACCCCGGTTTTATTCCTAAAACACTAATTTTCCACAATCG
1 AATTTTCACAATCGGGGATACTCCAACCCCGG-TTTATTCCTAAAACACCAATTTTCCACAATCG
*
168790 GGGATACTCCAACTCCGATTTTATTTTCAAAACAC-C
65 GGGATACTCCAACTCCGATTTTATTTCCAAAACACTC
* *
168826 AATTTTCCACAATCGGGGATACTCCAACCCCGG-TT-TT-C-AAAACACCAATTTTCTATAATCG
1 AATTTT-CACAATCGGGGATACTCCAACCCCGGTTTATTCCTAAAACACCAATTTTCCACAATCG
* *
168887 GGGATACTCTAACTCCGATTTTATTTCCAAAACACTG
65 GGGATACTCCAACTCCGATTTTATTTCCAAAACACTC
*
168924 ACTTTTCACAATCGGGGATACTCCAACCCC
1 AATTTTCACAATCGGGGATACTCCAACCCC
168954 ATTATTTTCG
Statistics
Matches: 117, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
97 77 0.66
98 6 0.05
99 2 0.02
100 2 0.02
101 6 0.05
102 24 0.21
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (101 bp):
AATTTTCACAATCGGGGATACTCCAACCCCGGTTTATTCCTAAAACACCAATTTTCCACAATCGG
GGATACTCCAACTCCGATTTTATTTCCAAAACACTC
Found at i:168989 original size:79 final size:78
Alignment explanation
Indices: 168886--169216 Score: 425
Period size: 79 Copynumber: 4.2 Consensus size: 78
168876 TTCTATAATC
* * * * *
168886 GGGGATACTCTAACTCCGATTTTATTTCCAAAACACTGACTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACA-TCAATTTTCACAATCGGGGATACTCCAAC
168951 CCCATTATTTTCGA
65 CCCATTATTTTCGA
* * *
168965 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATCTTTCATAATCAGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAAT-TTTCACAATCGGGGATACTCCAAC
**
169030 CCTGTTA-TTTCTGA
65 CCCATTATTTTC-GA
* * * *
169044 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCAATTCTCCGCAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATT-TTCACAATCGGGGATACTCCAAC
* *
169109 CCCTTTATTTCCGA
65 CCCATTATTTTCGA
* * * *
169123 GGGGACACTCCAACCCCGATTTTATTTCTAAAACATCAATTTT-TC-ATCGGGGGTACTCCAATC
1 GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCACAATCGGGGATACTCCAACC
169186 CCATTATTTTCGA
66 CCATTATTTTCGA
169199 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
169217 TTATTTTCGA
Statistics
Matches: 220, Mismatches: 28, Indels: 11
0.85 0.11 0.04
Matches are distributed among these distances:
76 44 0.20
77 1 0.00
78 9 0.04
79 163 0.74
80 3 0.01
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGATTTTATTTCTAAAACATCAATTTTCACAATCGGGGATACTCCAACC
CCATTATTTTCGA
Found at i:169207 original size:28 final size:28
Alignment explanation
Indices: 169171--169243 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 28
169161 ATTTTTCATC
* *
169171 GGGGGTACTCCAATCCCATTATTTTCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
*
169199 GGGGATACTCCAACCCCGTTATTTTCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
* *
169227 GGGAATACCCCAACCCC
1 GGGGATACTCCAACCCC
169244 TGTTTTATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 40 1.00
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTTCGA
Found at i:169222 original size:104 final size:106
Alignment explanation
Indices: 169095--169323 Score: 293
Period size: 104 Copynumber: 2.2 Consensus size: 106
169085 CTCCGCAATC
* * *
169095 GGGGATACTCCAACCCCTTTATTTCCGAGGGGACACTCCAACCCC-GATTTTATTTCTAAAACAT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGAACACCCCAACCCCTG-TTTTATTTCTAAAACAT
* * * * * *
169159 CAATTT-T-TCATCGGGGGTACTCCAATCCCATTATTTTCGA
65 CAATTTCTATAATCGAGGATACTCCAACCCCATTATCTCCGA
* * * *
169199 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCTGTTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGAACACCCCAACCCCTGTTTTATTTCTAAAACATC
*
169264 AATTTCTCATAATCGAGGATACTCCAACCCCGTTATCTCCGA
66 AATTTCT-ATAATCGAGGATACTCCAACCCCATTATCTCCGA
169306 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
169324 GTTTTGTTTC
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
104 61 0.57
105 2 0.02
107 44 0.41
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.30
Consensus pattern (106 bp):
GGGGATACTCCAACCCCGTTATTTCCGAGGGAACACCCCAACCCCTGTTTTATTTCTAAAACATC
AATTTCTATAATCGAGGATACTCCAACCCCATTATCTCCGA
Found at i:169276 original size:262 final size:263
Alignment explanation
Indices: 168937--169485 Score: 737
Period size: 262 Copynumber: 2.1 Consensus size: 263
168927 TTTCACAATC
* * *
168937 GGGGATACTCCAACCCCATTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACATC
* * *
169002 AATCTTTCATAATC-AGGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCGGTTT
66 AATCTTTCATAATCGA-GGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTT
* * *
169066 TATTTCTAAAACACCAATTCTCCGCAATCGGGGATACTCCAACCCCTTTATTTCCGAGGGGACAC
130 TATTTCCAAAACA-CAATTCTCCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGACAC
* * * ** *
169131 TCCAACCCCGATTTTATTTCTAAAACATCAATTTTT-CATC-GGGGGTACTCCAATCCCATTATT
194 ACCAACCCCGATTTTATTTCCAAAACATCAATTTTTACAACTGGGGACACTCCAACCCCATTATT
*
169194 TTCGA
259 TTCAA
* * *
169199 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCTGTTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACATC
169264 AAT-TTCTCATAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTT
66 AATCTT-TCATAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTT
* ** * ** * * **
169328 TGTTTCCAAAACATTATTTTTTATAGTCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATGCA
130 TATTTCCAAAACACAATTCTCCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGACACA
* * *
169393 CCAATCCCGATTTTATTTCCAAATCATCGATTTTTCACAACTGGGGACACTCCAACCCCATTATT
195 CCAACCCCGATTTTATTTCCAAAACATCAATTTTT-ACAACTGGGGACACTCCAACCCCATTATT
169458 TTCAA
259 TTCAA
*
169463 GGGGATACGCCAACCCCGTTATT
1 GGGGATACTCCAACCCCGTTATT
169486 ATCTCCAAAA
Statistics
Matches: 249, Mismatches: 33, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
261 73 0.29
262 126 0.51
263 4 0.02
264 46 0.18
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (263 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACATC
AATCTTTCATAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTTT
ATTTCCAAAACACAATTCTCCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGACACAC
CAACCCCGATTTTATTTCCAAAACATCAATTTTTACAACTGGGGACACTCCAACCCCATTATTTT
CAA
Found at i:169291 original size:79 final size:78
Alignment explanation
Indices: 169199--169510 Score: 324
Period size: 79 Copynumber: 3.9 Consensus size: 78
169189 TTATTTTCGA
* * * *
169199 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCTGTTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACACCAACCCC-GTTTTATTTCCAAAATATT
169264 AATTTCTCATAATC
65 AATTTCTCATAATC
* * * * *
169278 GAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTTTGTTTCCAAAACATT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACACCAACCCC-GTTTTATTTCCAAAATATT
* * *
169343 -ATTTTTTATAGTC
65 AATTTCTCATAATC
* *
169356 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATGCACCAATCCCGATTTTATTTCC-AAATCAT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACACCAACCCCG-TTTTATTTCCAAAAT-AT
** * *
169420 CGATTTTTCACAA-C
64 TAATTTCTCATAATC
* * * * * *
169434 TGGGGACACTCCAACCCCATTATTTTCAAGGGGATACGCCAACCCCGTTATTATCTCCAAAATAT
1 -GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACACCAACCCCGTT-TTATTTCCAAAATAT
169499 TAAATTTCTCAT
64 T-AATTTCTCAT
169511 CGGGAAATGT
Statistics
Matches: 191, Mismatches: 35, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
77 4 0.02
78 64 0.34
79 112 0.59
80 11 0.06
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGTTATTTCCGAGGGGATACACCAACCCCGTTTTATTTCCAAAATATTA
ATTTCTCATAATC
Found at i:169341 original size:183 final size:185
Alignment explanation
Indices: 169017--169389 Score: 493
Period size: 183 Copynumber: 2.0 Consensus size: 185
169007 TTCATAATCA
* * *
169017 GGGATACTCCAACCCTGTTATTTCTGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACCA
1 GGGATACTCCAACCCCGTTATTTCTGAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACACCA
* * * *
169082 ATTCTCCGCAATCGGGGATACTCCAACCCCTTTATTTCCGAGGGGACACTCCAACCCCGATTTTA
66 ATTCTCCACAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGACACTCCAACCCCGATTTTA
* * * *
169147 TTTCTAAAACATCAATTTTT-CA-TCGGGGGTACTCCAATCCCATTATTTTCGAG
131 TTTCCAAAACATCAATTTTTACAGTCGGGGATACTCCAACCCCATTATTTCCGAG
* * **
169200 GGGATACTCCAACCCCGTTATTT-TCGAGGGAATACCCCAACCCCTGTTTTATTTCTAAAATATT
1 GGGATACTCCAACCCCGTTATTTCT-GAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACACC
* * *
169264 AATT-TCTCATAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTT
65 AATTCTC-CACAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGACACTCCAACCCCGATTT
* * * * *
169328 TGTTTCCAAAACATTATTTTTTATAGTCGGGGATACTCCAACCCCGTTATTTCCGAG
129 TATTTCCAAAACATCAATTTTTACAGTCGGGGATACTCCAACCCCATTATTTCCGAG
169385 GGGAT
1 GGGAT
169390 GCACCAATCC
Statistics
Matches: 163, Mismatches: 23, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
182 3 0.02
183 127 0.78
184 1 0.01
185 32 0.20
ACGTcount: A:0.25, C:0.27, G:0.16, T:0.31
Consensus pattern (185 bp):
GGGATACTCCAACCCCGTTATTTCTGAGGGAATACCCCAACCCCGGTTTTATTTCTAAAACACCA
ATTCTCCACAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGACACTCCAACCCCGATTTTA
TTTCCAAAACATCAATTTTTACAGTCGGGGATACTCCAACCCCATTATTTCCGAG
Found at i:169493 original size:157 final size:157
Alignment explanation
Indices: 169199--169500 Score: 360
Period size: 157 Copynumber: 1.9 Consensus size: 157
169189 TTATTTTCGA
* * *
169199 GGGGATACTCCAACCCCGTTATTTTCGAGGGAATACCCCAACCCCTGTTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGAATACACCAACCCCTGTTTTATTTCTAAAATATC
* * * * *
169264 AATTTCTCATAATCGAGGATACTCCAACCCCGTTATCTCCGAGGGGATACTCCAACCCCGGTTTT
66 AATTTCTCACAATCGAGGACACTCCAACCCCATTATCTCCAAGGGGATACGCCAACCCCGGTTTT
* *
169329 GTTTCCAAAACATTATTTTTTATAGTC
131 ATCTCCAAAACATTATTTTTTATAGTC
* * * *
169356 GGGGATACTCCAACCCCGTTATTTCCGAGGGGATGCACCAATCCC-GATTTTATTTC-CAAATCA
1 GGGGATACTCCAACCCCGTTATTTCCGAGGGAATACACCAACCCCTG-TTTTATTTCTAAAAT-A
* * * * *
169419 TCGATTTTTCACAA-CTGGGGACACTCCAACCCCATTATTTTCAAGGGGATACGCCAACCCC-GT
64 TCAATTTCTCACAATC-GAGGACACTCCAACCCCATTATCTCCAAGGGGATACGCCAACCCCGGT
*
169482 TATTATCTCCAAAATATTA
128 T-TTATCTCCAAAACATTA
169501 AATTTCTCAT
Statistics
Matches: 121, Mismatches: 20, Indels: 8
0.81 0.13 0.05
Matches are distributed among these distances:
156 9 0.07
157 112 0.93
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (157 bp):
GGGGATACTCCAACCCCGTTATTTCCGAGGGAATACACCAACCCCTGTTTTATTTCTAAAATATC
AATTTCTCACAATCGAGGACACTCCAACCCCATTATCTCCAAGGGGATACGCCAACCCCGGTTTT
ATCTCCAAAACATTATTTTTTATAGTC
Found at i:171521 original size:4 final size:4
Alignment explanation
Indices: 171512--171538 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
171502 TTTTGAGGTG
171512 TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
171539 GTTTGTTTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTA
Found at i:182945 original size:55 final size:55
Alignment explanation
Indices: 182851--183355 Score: 620
Period size: 55 Copynumber: 9.0 Consensus size: 55
182841 GACGCCTTTT
* * *
182851 CCTTTCAAAGCTCACACAAGTTGGTGGCACCTTT-CAGTCCTTAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACG
*
182906 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCTAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
* *
182961 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGTAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACG
* * * *
183016 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCCAGTCTTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
* *
183071 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTCCCAGTCCTTAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
* * * *
183126 CCTTTCAAAGCCCACACGAGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
* * *
183181 CCTTTCAAAGCCCACACAAGTTGGTAGCATTTTCCAGTCTTCAAAGAGCAGGATGCTTT
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGA--C--G
** *
183240 CTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCCAGTCCTCAAAGAGTAGGACG
1 C-CTTT-CAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
* ** *
183297 CCTTTCTTTTTCAAAGCCCAAATGAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGA
1 -C---C--TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGA
183356 TGCACTTTAT
Statistics
Matches: 395, Mismatches: 40, Indels: 24
0.86 0.09 0.05
Matches are distributed among these distances:
54 6 0.02
55 290 0.73
56 3 0.01
57 1 0.00
58 1 0.00
59 2 0.01
60 6 0.02
61 81 0.21
62 5 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (55 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAGGACG
Found at i:184206 original size:19 final size:21
Alignment explanation
Indices: 184163--184214 Score: 81
Period size: 19 Copynumber: 2.6 Consensus size: 21
184153 TTCAATAATT
*
184163 TGTATCGATACATTCAGTAAA
1 TGTATCGATACATTAAGTAAA
184184 TGTATCGATACA-TAAGT-AA
1 TGTATCGATACATTAAGTAAA
184203 TGTATCGATACA
1 TGTATCGATACA
184215 GTGTATCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 14 0.47
20 4 0.13
21 12 0.40
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTAAGTAAA
Found at i:186687 original size:51 final size:52
Alignment explanation
Indices: 186612--186843 Score: 275
Period size: 51 Copynumber: 4.6 Consensus size: 52
186602 AAGTTTCTCA
* *
186612 AATTTT-CATAATCGAGGG-TACTCCAACCT-CGGTTTTATTC-CTAAAACACT
1 AATTTTCCACAATCG-GGGATACTCCAACCTCCGGTTTTATTCTC-AAAACACC
*
186662 AATTTTCCACAATCGGGGATACTCCAA-CTCCGGTTTTATTTTCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAACCTCCGGTTTTATTCTCAAAACACC
*
186713 AATTTTCCACAATCGGGGATACTCCAACC-CCGGTTTTATTTTCAAAACACC
1 AATTTTCCACAATCGGGGATACTCCAACCTCCGGTTTTATTCTCAAAACACC
* * * * *
186764 AATTTTCTATAATTGGGGATACTCCAA-CTCCGATTTTATT-TCCAAAACATC
1 AATTTTCCACAATCGGGGATACTCCAACCTCCGGTTTTATTCT-CAAAACACC
*
186815 AACTTTT-CACAATCGAGGATACTCCAACC
1 AA-TTTTCCACAATCGGGGATACTCCAACC
186844 CCGTTATTTT
Statistics
Matches: 161, Mismatches: 12, Indels: 16
0.85 0.06 0.08
Matches are distributed among these distances:
50 13 0.08
51 141 0.88
52 7 0.04
ACGTcount: A:0.31, C:0.26, G:0.11, T:0.32
Consensus pattern (52 bp):
AATTTTCCACAATCGGGGATACTCCAACCTCCGGTTTTATTCTCAAAACACC
Found at i:186801 original size:102 final size:101
Alignment explanation
Indices: 186612--186846 Score: 321
Period size: 102 Copynumber: 2.3 Consensus size: 101
186602 AAGTTTCTCA
* * *
186612 AATTTTCATAATCGAGGG-TACTCCAACCTCGGTTTTATTCCTAAAACACTAATTTTCCACAATC
1 AATTTTCACAATCG-GGGATACTCCAACCCCGGTTTTATTCCTAAAACACCAATTTTCCACAATC
* *
186676 GGGGATACTCCAACTCCGGTTTTATTTTCAAAACACC
65 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACC
* * *
186713 AATTTTCCACAATCGGGGATACTCCAACCCCGGTTTTATT-TTCAAAACACCAATTTTCTATAAT
1 AATTTT-CACAATCGGGGATACTCCAACCCCGGTTTTATTCCT-AAAACACCAATTTTCCACAAT
* *
186777 TGGGGATACTCCAACTCCGATTTTATTTCCAAAACATC
64 CGGGGATACTCCAACTCCGATTTTATTTCCAAAACACC
*
186815 AACTTTTCACAATCGAGGATACTCCAACCCCG
1 AA-TTTTCACAATCGGGGATACTCCAACCCCG
186847 TTATTTTCGA
Statistics
Matches: 119, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
101 10 0.08
102 105 0.88
103 4 0.03
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (101 bp):
AATTTTCACAATCGGGGATACTCCAACCCCGGTTTTATTCCTAAAACACCAATTTTCCACAATCG
GGGATACTCCAACTCCGATTTTATTTCCAAAACACC
Found at i:186914 original size:79 final size:77
Alignment explanation
Indices: 186778--187109 Score: 459
Period size: 79 Copynumber: 4.2 Consensus size: 77
186768 TTCTATAATT
* * * * *
186778 GGGGATACTCCAACTCCGATTTTATTTCCAAAACATCAACTTTTCACAATCGAGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAA-TTTTC-TAATCGGGGATACTCCAAC
186843 CCCGTTATTTTCGA
64 CCCGTTATTTTCGA
* *
186857 GGGGATACTCCAACCCCAGTTTTATTTCTAAAGCATCAATCTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAAT-TTTC-TAATCGGGGATACTCCAAC
*
186922 CTCGTTATTTTCGA
64 CCCGTTATTTTCGA
* *
186936 GGGGATACTCCAACCCCTGGTTTTATTTCTAAAACACCAATTCTCTGCAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCC-GGTTTTATTTCTAAAACATCAATTTTCT--AATCGGGGATACTCCAA
*
187001 CCTCGTTATTTTCGA
63 CCCCGTTATTTTCGA
* * *
187016 GGGGACACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTT-TTATCGGGGATACTCCAATCC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCTAATCGGGGATACTCCAACCC
*
187080 CATTATTTTCGA
66 CGTTATTTTCGA
187092 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
187110 TTATTTTCGA
Statistics
Matches: 229, Mismatches: 20, Indels: 11
0.88 0.08 0.04
Matches are distributed among these distances:
76 45 0.20
78 3 0.01
79 113 0.49
80 68 0.30
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (77 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCTAATCGGGGATACTCCAACCC
CGTTATTTTCGA
Found at i:187096 original size:28 final size:28
Alignment explanation
Indices: 187064--187137 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
187054 ATTTTTTATC
*
187064 GGGGATACTCCAATCCCATTATTTTCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
*
187092 GGGGATACTCCAACCCCGTTATTTTCGA
1 GGGGATACTCCAACCCCATTATTTTCGA
*
187120 GGGGATACCCCAACCCCA
1 GGGGATACTCCAACCCCA
187138 ATTTTATTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.24, C:0.31, G:0.20, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTTTCGA
Found at i:187112 original size:104 final size:106
Alignment explanation
Indices: 186988--187216 Score: 309
Period size: 104 Copynumber: 2.2 Consensus size: 106
186978 CTCTGCAATC
* * **
186988 GGGGATACTCCAACCTCGTTATTTTCGAGGGGACACTCCAACCCCGGTTTTATTTCTAAAACATC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGACACCCCAACCCCAATTTTATTTCTAAAACATC
* * * * *
187053 AATTT-T-TTATCGGGGATACTCCAATCCCATTATTTTCGA
66 AATTTCTATAATCAGGGATACTCCAACCCCATTATCTCCGA
* * *
187092 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAATATT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGACACCCCAACCCCAATTTTATTTCTAAAACATC
187157 AATTTCTCATAATCAGGGATACTCCAACCCCATTATCTCCGA
66 AATTTCT-ATAATCAGGGATACTCCAACCCCATTATCTCCGA
* *
187199 GAGGATACTCAAACCCCG
1 GGGGATACTCCAACCCCG
187217 GTTTTGTTTC
Statistics
Matches: 108, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
104 63 0.58
105 1 0.01
107 44 0.41
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.30
Consensus pattern (106 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGGACACCCCAACCCCAATTTTATTTCTAAAACATC
AATTTCTATAATCAGGGATACTCCAACCCCATTATCTCCGA
Found at i:187169 original size:263 final size:262
Alignment explanation
Indices: 186831--187378 Score: 699
Period size: 263 Copynumber: 2.1 Consensus size: 262
186821 TCACAATCGA
* * *
186831 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCAGTTTTATTTCTAAAGCATCAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAACATCAA
* * * * * * *
186896 TCTTTCATAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCCTGGTTTTA
66 TCTTTCATAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCC-GGTTTTA
* * *
186961 TTTCTAAAACACCAATTCTCTGCAATCGGGGATACTCCAA-CCTCGTTATTTTCGAGGGGACACT
130 TTTCTAAAACACCAATTCTCTACAATC-GGGATACTCCAACCCT-GTTATTTCCGAGGGGACACA
* * * * *
187025 CCAACCCCGGTTTTATTTCTAAAACATCAATTTTT-TATCGGGGATACTCCAATCCCATTATTTT
193 CCAACCCCGATTTTATTTCCAAAACATCAATTTTTCAACCGGGGATACTCCAACCCCATTATTTT
*
187089 CGAGG
258 CAAGG
* *
187094 GGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAATATTAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAACATCAA
*
187159 T-TTCTCATAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCCGGTTTTG
66 TCTT-TCATAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCCGGTTTTA
* * * * * **
187223 TTTCTAAAACATCAATTTTTTATAGTCGGGATACTCCAACCCTGTTATTTCCGAGGGGATGCACC
130 TTTCTAAAACACCAATTCTCTACAATCGGGATACTCCAACCCTGTTATTTCCGAGGGGACACACC
* * * *
187288 AATCCCGATTTTATTTCCAAATCATCGATTTTTCACAACCGGGGATACTCTAACCCCATTATTTT
195 AACCCCGATTTTATTTCCAAAACATCAATTTTT--CAACCGGGGATACTCCAACCCCATTATTTT
187353 CAAGG
258 CAAGG
*
187358 GGATA-TGCCAACTCCGTTATT
1 GGATACT-CCAACCCCGTTATT
187379 ATCTCCAAAA
Statistics
Matches: 245, Mismatches: 34, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
261 58 0.24
262 32 0.13
263 108 0.44
264 47 0.19
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (262 bp):
GGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAACATCAA
TCTTTCATAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCCGGTTTTAT
TTCTAAAACACCAATTCTCTACAATCGGGATACTCCAACCCTGTTATTTCCGAGGGGACACACCA
ACCCCGATTTTATTTCCAAAACATCAATTTTTCAACCGGGGATACTCCAACCCCATTATTTTCAA
GG
Found at i:187183 original size:79 final size:78
Alignment explanation
Indices: 187093--187362 Score: 272
Period size: 79 Copynumber: 3.4 Consensus size: 78
187083 TATTTTCGAG
* * * * *
187093 GGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCAATTTTATTTCTAAAATATTA
1 GGGATACTCCAACCCCATTATTTCCGAGGGGATACACCAACCCCGATTTTATTTCTAAAATATCA
*
187158 ATTTCTCATAATC
66 ATTTTTCATAATC
* * * * * * *
187171 AGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCCGGTTTTGTTTCTAAAACATC
1 -GGGATACTCCAACCCCATTATTTCCGAGGGGATACACCAACCCCGATTTTATTTCTAAAATATC
* *
187236 AATTTTTTATAGTC
65 AATTTTTCATAATC
** * * *
187250 GGGATACTCCAACCCTGTTATTTCCGAGGGGATGCACCAATCCCGATTTTATTTC-CAAATCATC
1 GGGATACTCCAACCCCATTATTTCCGAGGGGATACACCAACCCCGATTTTATTTCTAAAAT-ATC
* * *
187314 GATTTTTCACAACC
65 AATTTTTCATAATC
* * *
187328 GGGGATACTCTAACCCCATTATTTTCAAGGGGATA
1 -GGGATACTCCAACCCCATTATTTCCGAGGGGATA
187363 TGCCAACTCC
Statistics
Matches: 152, Mismatches: 37, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
77 3 0.02
78 57 0.38
79 92 0.61
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (78 bp):
GGGATACTCCAACCCCATTATTTCCGAGGGGATACACCAACCCCGATTTTATTTCTAAAATATCA
ATTTTTCATAATC
Found at i:187229 original size:183 final size:184
Alignment explanation
Indices: 186908--187282 Score: 506
Period size: 183 Copynumber: 2.0 Consensus size: 184
186898 TTTCATAATC
* * **
186908 GGGGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCCCTGGTTTTATTTCTAAAACAC
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCTAATTTTATTTCTAAAACAC
* * * * * * *
186973 CAATTCTCTGCAATCGGGGATACTCCAACCTCGTTATTTTCGAGGGGACACTCCAACCCCGGTTT
66 CAATTCTCT-CAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGACACTCAAACCCCGGTTT
* *
187038 TATTTCTAAAACATCAATTTTTTATCG-GGGATACTCCAATCCC-ATTATTTTCGA
130 TATTTCTAAAACATCAATTTTTTATAGCGGGATACTCCAA-CCCTATTATTTCCGA
* *
187092 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCC-AATTTTATTTCTAAAATAT
1 GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCTAATTTTATTTCTAAAACAC
* *
187156 TAATT-TCTCATAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGATACTCAAACCCCGGTT
66 CAATTCTCTC--AATCAGGGATACTCCAACCCCATTATCTCCGAGAGGACACTCAAACCCCGGTT
* *
187220 TTGTTTCTAAAACATCAATTTTTTATAGTCGGGATACTCCAACCCTGTTATTTCCGA
129 TTATTTCTAAAACATCAATTTTTTATAG-CGGGATACTCCAACCCTATTATTTCCGA
187277 GGGGAT
1 GGGGAT
187283 GCACCAATCC
Statistics
Matches: 167, Mismatches: 19, Indels: 9
0.86 0.10 0.05
Matches are distributed among these distances:
181 1 0.01
182 3 0.02
183 90 0.54
184 46 0.28
185 27 0.16
ACGTcount: A:0.26, C:0.26, G:0.16, T:0.32
Consensus pattern (184 bp):
GGGGATACTCCAACCCCGTTATTTTCGAGGGGATACCCCAACCCCTAATTTTATTTCTAAAACAC
CAATTCTCTCAATCAGGGATACTCCAACCCCATTATCTCCGAGAGGACACTCAAACCCCGGTTTT
ATTTCTAAAACATCAATTTTTTATAGCGGGATACTCCAACCCTATTATTTCCGA
Found at i:191022 original size:9 final size:9
Alignment explanation
Indices: 190988--191019 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
190978 TGAGTCAACC
190988 TCATCATTA
1 TCATCATTA
190997 TCATCATTA
1 TCATCATTA
*
191006 TCATCTTTA
1 TCATCATTA
191015 TCATC
1 TCATC
191020 TTTGACGGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.28, C:0.25, G:0.00, T:0.47
Consensus pattern (9 bp):
TCATCATTA
Done.