Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold454
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 526734
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
File 1 of 4
Found at i:349 original size:3 final size:3
Alignment explanation
Indices: 341--366 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
331 TTACTGTGTA
341 AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AA
367 AACACAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:847 original size:115 final size:115
Alignment explanation
Indices: 710--955 Score: 320
Period size: 115 Copynumber: 2.2 Consensus size: 115
700 TGAAATTTTC
* **
710 AAAA-ATATCTTATAAAAATTTTTTGAGTTGAATCTAGATAAATTTCTTTAAATTTAG-ATTAGT
1 AAAATATATCTTATAAAAATTTTTCGAGTTGAATCTAGATAAATTTCTACAAA-TTAGTATTAGT
* * *
773 TTAA-ATTCATATTACTATTTGATAAATAAAATAAATTTAAATTTAATTAT
65 TTAATATTCAGATTACTATTTAATAAATAAAATAAATTTAAATTTAACTAT
* * * *
823 AAAAATATATCTTATAAAATTTTTTCGAGTTGAATTTGGATAAATTTCTACAAATTCGTATTAGT
1 -AAAATATATCTTATAAAAATTTTTCGAGTTGAATCTAGATAAATTTCTACAAATTAGTATTAGT
* * * *
888 TTAATTTTGAGATTATTATTTAATAAATAAAATAAATTTAAATTTCACTAT
65 TTAATATTCAGATTACTATTTAATAAATAAAATAAATTTAAATTTAACTAT
939 AAAATATAT-TTATAAAA
1 AAAATATATCTTATAAAA
956 GACAATTGAT
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
114 15 0.13
115 61 0.53
116 39 0.34
ACGTcount: A:0.44, C:0.05, G:0.07, T:0.44
Consensus pattern (115 bp):
AAAATATATCTTATAAAAATTTTTCGAGTTGAATCTAGATAAATTTCTACAAATTAGTATTAGTT
TAATATTCAGATTACTATTTAATAAATAAAATAAATTTAAATTTAACTAT
Found at i:1487 original size:24 final size:25
Alignment explanation
Indices: 1460--1518 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
1450 TATATTTATA
1460 TTTTATAT-TATGATCATATT-GTTT
1 TTTTATATATATGAT-ATATTAGTTT
* *
1484 TTTTATATCATATTATATTTTAGTTT
1 TTTTATAT-ATATGATATATTAGTTT
1510 TTTTATATA
1 TTTTATATA
1519 ATTTATTAAC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 8 0.27
25 5 0.17
26 17 0.57
ACGTcount: A:0.27, C:0.03, G:0.05, T:0.64
Consensus pattern (25 bp):
TTTTATATATATGATATATTAGTTT
Found at i:1504 original size:18 final size:19
Alignment explanation
Indices: 1467--1504 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
1457 ATATTTTATA
* *
1467 TTATGATCATATTGTTTTT
1 TTATGATCATATTATATTT
1486 TTAT-ATCATATTATATTT
1 TTATGATCATATTATATTT
1504 T
1 T
1505 AGTTTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (19 bp):
TTATGATCATATTATATTT
Found at i:1845 original size:40 final size:40
Alignment explanation
Indices: 1790--1866 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
1780 AGTTATGCGT
* * * *
1790 AAGTCAGCAGAAAAATAGAATATAA-AGGAAATAGAGAACA
1 AAGTCAACAAAAAAATAAAACATAATAGG-AATAGAGAACA
1830 AAGTCAACAAAAAAATAAAACATAATAGGAATAGAGA
1 AAGTCAACAAAAAAATAAAACATAATAGGAATAGAGA
1867 GGAATAATCA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 29 0.91
41 3 0.09
ACGTcount: A:0.62, C:0.08, G:0.17, T:0.13
Consensus pattern (40 bp):
AAGTCAACAAAAAAATAAAACATAATAGGAATAGAGAACA
Found at i:2852 original size:10 final size:9
Alignment explanation
Indices: 2817--2849 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
2807 TATAATTTTT
2817 TTAAAAATA
1 TTAAAAATA
*
2826 TTAAATATA
1 TTAAAAATA
2835 -TAAAAATA
1 TTAAAAATA
2843 TTAAAAA
1 TTAAAAA
2850 ATAAATATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (9 bp):
TTAAAAATA
Found at i:2854 original size:24 final size:26
Alignment explanation
Indices: 2817--2870 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 26
2807 TATAATTTTT
2817 TTAAAAATATTAAATATATAAAAATA
1 TTAAAAATATTAAATATATAAAAATA
**
2843 TTAAAAA-A-TAAATATATAGTAATA
1 TTAAAAATATTAAATATATAAAAATA
2867 TTAA
1 TTAA
2871 TTTATATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 18 0.69
25 1 0.04
26 7 0.27
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (26 bp):
TTAAAAATATTAAATATATAAAAATA
Found at i:3230 original size:21 final size:20
Alignment explanation
Indices: 3201--3239 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
3191 TATTTTTATT
*
3201 TAAATTTAATTATAAATATA
1 TAAATTTAATTAAAAATATA
3221 TAAATATTAATTAAAAATA
1 TAAAT-TTAATTAAAAATA
3240 ATATTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAATTTAATTAAAAATATA
Found at i:3258 original size:34 final size:34
Alignment explanation
Indices: 3220--3284 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
3210 TTATAAATAT
* *
3220 ATAAATATTAATTAAAAATAATATTTTAATTCAA
1 ATAAATAATAATTAAAAATAATAATTTAATTCAA
* * *
3254 ATAAATAATAATTGAAATTTATAATTTAATT
1 ATAAATAATAATTAAAAATAATAATTTAATT
3285 GTTTTTAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (34 bp):
ATAAATAATAATTAAAAATAATAATTTAATTCAA
Found at i:3492 original size:38 final size:37
Alignment explanation
Indices: 3429--3533 Score: 97
Period size: 38 Copynumber: 2.8 Consensus size: 37
3419 TAAGTAAATG
*
3429 TTTTTTATATATAATATAAAAATATTTAATATTTAAA
1 TTTTTTATATATAATAAAAAAATATTTAATATTTAAA
* * *
3466 TTTTTTATATAT-TTAAAAAATTATATTTTATATTTATA
1 TTTTTTATATATAATAAAAAA--ATATTTAATATTTAAA
** *
3504 -TTTAAATATATATTAAATATAAATATTTAA
1 TTTTTTATATATAATAAA-A-AAATATTTAA
3534 ATAAAATAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
36 6 0.11
37 21 0.38
38 26 0.46
39 1 0.02
40 2 0.04
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (37 bp):
TTTTTTATATATAATAAAAAAATATTTAATATTTAAA
Found at i:3515 original size:25 final size:26
Alignment explanation
Indices: 3471--3536 Score: 71
Period size: 25 Copynumber: 2.5 Consensus size: 26
3461 TTAAATTTTT
* **
3471 TATATATTTAAAAAATTATATTTTATA
1 TATATATTT-AAATATTATATTAAATA
*
3498 TTTATATTTAAATA-TATATTAAATA
1 TATATATTTAAATATTATATTAAATA
*
3523 TAAATATTTAAATA
1 TATATATTTAAATA
3537 AAATAAAAAA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
25 21 0.64
26 4 0.12
27 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (26 bp):
TATATATTTAAATATTATATTAAATA
Found at i:4100 original size:28 final size:28
Alignment explanation
Indices: 4049--4109 Score: 72
Period size: 27 Copynumber: 2.2 Consensus size: 28
4039 TAATATTTAT
* *
4049 ATATTTTTATAATTAAATTTAAA-TAAA
1 ATATTTTTATAATAAAATATAAATTAAA
*
4076 ATATTTTTATTATAAAATAATAAATTAAA
1 ATATTTTTATAATAAAAT-ATAAATTAAA
4105 A-ATTT
1 ATATTT
4110 ATCAAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
27 16 0.55
28 8 0.28
29 5 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (28 bp):
ATATTTTTATAATAAAATATAAATTAAA
Found at i:7980 original size:2 final size:2
Alignment explanation
Indices: 7975--8019 Score: 90
Period size: 2 Copynumber: 22.5 Consensus size: 2
7965 TCCCTTCCCT
7975 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8017 TC T
1 TC T
8020 TCACTTTATA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:8242 original size:43 final size:43
Alignment explanation
Indices: 8171--8258 Score: 131
Period size: 43 Copynumber: 2.0 Consensus size: 43
8161 ACTCCAGCCT
* * *
8171 TTGGGGAATATATGAATACGAATATTTTCATATGCTTGGAAGA
1 TTGGAGAATATATGAATACGAAGATTTTCATATGCTTGAAAGA
* *
8214 TTGGAGAATGTATGAATACGAAGATTTTCATATGGTTGAAAGA
1 TTGGAGAATATATGAATACGAAGATTTTCATATGCTTGAAAGA
8257 TT
1 TT
8259 ATATTTTCAT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 40 1.00
ACGTcount: A:0.35, C:0.06, G:0.24, T:0.35
Consensus pattern (43 bp):
TTGGAGAATATATGAATACGAAGATTTTCATATGCTTGAAAGA
Found at i:8264 original size:24 final size:24
Alignment explanation
Indices: 8237--8288 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
8227 GAATACGAAG
*
8237 ATTTTCATAT-GGTTGAAAGATTAT
1 ATTTTCAT-TCGGTTAAAAGATTAT
*
8261 ATTTTCATTCGTTTAAAAGATTAT
1 ATTTTCATTCGGTTAAAAGATTAT
8285 ATTT
1 ATTT
8289 ATATATATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 1 0.04
24 24 0.96
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.50
Consensus pattern (24 bp):
ATTTTCATTCGGTTAAAAGATTAT
Found at i:8295 original size:2 final size:2
Alignment explanation
Indices: 8282--8323 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
8272 TTTAAAAGAT
* * *
8282 TA TA TT TA TA TA TA TA TA TA TA TT TA GA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8324 AAATATGAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9199 original size:46 final size:47
Alignment explanation
Indices: 9149--9251 Score: 115
Period size: 46 Copynumber: 2.2 Consensus size: 47
9139 TTATTAGTTT
*
9149 TAAATATAAA-ATAATAAAACAT-A-AATATTATTAATTATATTATAAA
1 TAAATATAAACA-AATAAAA-ATAATAATAATATTAATTATATTATAAA
* * *
9195 TAAATA-AAACACATAAAAATAATAATAATGTTAATTATATTATAAT
1 TAAATATAAACAAATAAAAATAATAATAATATTAATTATATTATAAA
9241 TAAATAATAAA
1 TAAAT-ATAAA
9252 TGAGTTTTAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
44 2 0.04
45 10 0.21
46 32 0.67
47 1 0.02
48 3 0.06
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.35
Consensus pattern (47 bp):
TAAATATAAACAAATAAAAATAATAATAATATTAATTATATTATAAA
Found at i:9899 original size:13 final size:13
Alignment explanation
Indices: 9876--9919 Score: 56
Period size: 13 Copynumber: 3.5 Consensus size: 13
9866 TTTTATTTTT
9876 TTTAAATATTTATA
1 TTTAAA-ATTTATA
9890 TTTAAAATTTATA
1 TTTAAAATTTATA
*
9903 TTT--AATATATA
1 TTTAAAATTTATA
9914 TTTAAA
1 TTTAAA
9920 TATAAATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
11 10 0.37
13 11 0.41
14 6 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (13 bp):
TTTAAAATTTATA
Found at i:10331 original size:14 final size:14
Alignment explanation
Indices: 10314--10347 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
10304 ATTATATTAT
* *
10314 ATATATATATAAAG
1 ATATAAATATAAAA
10328 ATATAAATATAAAA
1 ATATAAATATAAAA
10342 ATATAA
1 ATATAA
10348 TTATTTATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (14 bp):
ATATAAATATAAAA
Found at i:10405 original size:17 final size:17
Alignment explanation
Indices: 10385--10425 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
10375 ATTTTAAAAA
10385 ATATTAAATATATTTAT
1 ATATTAAATATATTTAT
10402 ATA-TAATATATATTTAT
1 ATATTAA-ATATATTTAT
10419 AT-TTAAA
1 ATATTAAA
10426 ATTTGAATAG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
ATATTAAATATATTTAT
Found at i:10817 original size:12 final size:12
Alignment explanation
Indices: 10796--10825 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
10786 CAAAATTTTT
*
10796 TTAAATATTAAA
1 TTAAAAATTAAA
10808 TTAAAAATTAAA
1 TTAAAAATTAAA
10820 TTAAAA
1 TTAAAA
10826 TATAAGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (12 bp):
TTAAAAATTAAA
Found at i:13954 original size:23 final size:23
Alignment explanation
Indices: 13928--13975 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
13918 CAATGTGAAA
13928 GTTAGATTAAGTAAATATAAATC
1 GTTAGATTAAGTAAATATAAATC
13951 GTTAGATTAAGTAAATATAAATC
1 GTTAGATTAAGTAAATATAAATC
13974 GT
1 GT
13976 ATAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.46, C:0.04, G:0.15, T:0.35
Consensus pattern (23 bp):
GTTAGATTAAGTAAATATAAATC
Found at i:16739 original size:52 final size:52
Alignment explanation
Indices: 16657--16760 Score: 154
Period size: 52 Copynumber: 2.0 Consensus size: 52
16647 TAATTGGCTT
** *
16657 TCCTCTGGCTCAAAGTTCTTTACGCAAACTGTGTGTGCACACATACTTTAGA
1 TCCTCTGGCTCAAAGTTCTTTACGCAAACTGCATATGCACACATACTTTAGA
* * *
16709 TCCTCTGGCTCAAAGTTCTTTATGCGAACTGCATATGCGCACATACTTTAGA
1 TCCTCTGGCTCAAAGTTCTTTACGCAAACTGCATATGCACACATACTTTAGA
16761 GAGAGAGAGA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 46 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33
Consensus pattern (52 bp):
TCCTCTGGCTCAAAGTTCTTTACGCAAACTGCATATGCACACATACTTTAGA
Found at i:16765 original size:2 final size:2
Alignment explanation
Indices: 16758--16782 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
16748 CACATACTTT
16758 AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG A
16783 ACTTACTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22701 original size:20 final size:20
Alignment explanation
Indices: 22666--22703 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22656 TTTATTTTCA
22666 TATATTATTTATTAAAATAT
1 TATATTATTTATTAAAATAT
22686 TATA-TATTTATATAAAAT
1 TATATTATTTAT-TAAAAT
22704 TTAACATTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 10 0.59
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATATTATTTATTAAAATAT
Found at i:22977 original size:16 final size:16
Alignment explanation
Indices: 22956--23006 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 16
22946 TTAAATATAA
22956 ATTAAATAATTTTAAT
1 ATTAAATAATTTTAAT
*
22972 ATTAAATACATGTTAA-
1 ATTAAATA-ATTTTAAT
*
22988 ATTTAATAAATATTTAAT
1 ATTAAAT-AAT-TTTAAT
23006 A
1 A
23007 AAAATATATA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 16 0.57
17 11 0.39
18 1 0.04
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.45
Consensus pattern (16 bp):
ATTAAATAATTTTAAT
Found at i:23161 original size:20 final size:21
Alignment explanation
Indices: 23136--23175 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
23126 TTCTTAGTTT
*
23136 TTTAATTAA-TGTTTAATTAA
1 TTTAATCAATTGTTTAATTAA
*
23156 TTTAATCAATTTTTTAATTA
1 TTTAATCAATTGTTTAATTA
23176 TCTAAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.57
Consensus pattern (21 bp):
TTTAATCAATTGTTTAATTAA
Found at i:24197 original size:72 final size:73
Alignment explanation
Indices: 24023--24203 Score: 201
Period size: 71 Copynumber: 2.5 Consensus size: 73
24013 CAAATTAATC
* ** *
24023 TTACAAATAAAAATAAATTACACTTTAAAAAATTCAAAATCTTATAATCAAAGCAAAAAATAAAT
1 TTACAAATAAAAATAAATCACACTTTAAAAAATTCAAAATCGCATAATCAAAACAAAAAATAAAT
24088 TTAAAATT
66 TTAAAATT
* * * * ** *
24096 TTACAAATAAAAA-AAATCACACCTTAAAAAATTTAAATTCGCATACT-AAAATTAAAAATTAA-
1 TTACAAATAAAAATAAATCACACTTTAAAAAATTCAAAATCGCATAATCAAAACAAAAAATAAAT
24158 TT-AAATT
66 TTAAAATT
* *
24165 TCTACAAATAAAAATAAATCATACTTTCAAAAATT-AAAA
1 T-TACAAATAAAAATAAATCACACTTTAAAAAATTCAAAA
24204 CTCATAAATT
Statistics
Matches: 91, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
69 6 0.07
70 17 0.19
71 28 0.31
72 27 0.30
73 13 0.14
ACGTcount: A:0.58, C:0.11, G:0.01, T:0.30
Consensus pattern (73 bp):
TTACAAATAAAAATAAATCACACTTTAAAAAATTCAAAATCGCATAATCAAAACAAAAAATAAAT
TTAAAATT
Found at i:24202 original size:26 final size:26
Alignment explanation
Indices: 24143--24203 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 26
24133 TTCGCATACT
* *
24143 AAAATTAAAAATTAATTAAATTTCTA
1 AAAATTAAAAATAAATCAAATTTCTA
* *
24169 CAAA-TAAAAATAAATCATACTTTC-A
1 AAAATTAAAAATAAATCA-AATTTCTA
24194 AAAATTAAAA
1 AAAATTAAAA
24204 CTCATAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
25 15 0.54
26 13 0.46
ACGTcount: A:0.61, C:0.08, G:0.00, T:0.31
Consensus pattern (26 bp):
AAAATTAAAAATAAATCAAATTTCTA
Found at i:25757 original size:13 final size:13
Alignment explanation
Indices: 25731--25828 Score: 56
Period size: 13 Copynumber: 7.2 Consensus size: 13
25721 AACAGTCAAT
**
25731 AATTATTTAAAAA
1 AATTATTTTTAAA
25744 AATTATTTTTAAA
1 AATTATTTTTAAA
* *
25757 AATT-TTAAAATAAAAA
1 AATTATT---TTTA-AA
* *
25773 AATTATCGTTTAAT
1 AATTAT-TTTTAAA
25787 AATTATTTTTAAA
1 AATTATTTTTAAA
25800 AATATATTTTTGAAA
1 AAT-TATTTTT-AAA
*
25815 TATT-TTTTTAAA
1 AATTATTTTTAAA
25827 AA
1 AA
25829 ATATCGTTCT
Statistics
Matches: 65, Mismatches: 12, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
12 6 0.09
13 28 0.43
14 15 0.23
15 9 0.14
16 6 0.09
17 1 0.02
ACGTcount: A:0.50, C:0.01, G:0.02, T:0.47
Consensus pattern (13 bp):
AATTATTTTTAAA
Found at i:25827 original size:56 final size:53
Alignment explanation
Indices: 25728--25836 Score: 121
Period size: 56 Copynumber: 2.0 Consensus size: 53
25718 AGAAACAGTC
25728 AATAATTATTTAAAAAAATTATTTTTAAAAATTTTAAAATAAAAAAATTATCGTTT
1 AATAATTATTTAAAAAAATTATTTTTAAAAATTTT-AAAT-AAAAAA-TATCGTTT
** * **
25784 AATAATTATTTTTAAAAATATATTTTTGAAATATTTT-TTTAAAAAATATCGTT
1 AATAATTATTTAAAAAAAT-TATTTTT-AAAAATTTTAAATAAAAAATATCGTT
25837 CTTAATATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
54 7 0.15
55 6 0.13
56 18 0.39
57 7 0.15
58 8 0.17
ACGTcount: A:0.49, C:0.02, G:0.03, T:0.47
Consensus pattern (53 bp):
AATAATTATTTAAAAAAATTATTTTTAAAAATTTTAAATAAAAAATATCGTTT
Found at i:26127 original size:14 final size:14
Alignment explanation
Indices: 26108--26137 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
26098 AATAAAGAGA
26108 TTATGATAGTTATT
1 TTATGATAGTTATT
*
26122 TTATGATTGTTATT
1 TTATGATAGTTATT
26136 TT
1 TT
26138 TTTATAAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.63
Consensus pattern (14 bp):
TTATGATAGTTATT
Found at i:27005 original size:31 final size:30
Alignment explanation
Indices: 26957--27045 Score: 101
Period size: 31 Copynumber: 2.9 Consensus size: 30
26947 GTTAGTAAAT
*
26957 AATAAAAA-ATTATTTTTATATTAATATTTT
1 AATAAAAATATTATTTTTATATTAA-ATTTA
*
26987 AA-AAAATTATATATTTTTATAATTAAATTTA
1 AATAAAAATAT-TATTTTTAT-ATTAAATTTA
*
27018 AATAAAAATATTATTTTAATTATTAAAT
1 AATAAAAATATTATTTTTA-TATTAAAT
27046 AATTTTTCGG
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
29 4 0.08
30 4 0.08
31 29 0.58
32 13 0.26
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (30 bp):
AATAAAAATATTATTTTTATATTAAATTTA
Found at i:27029 original size:28 final size:29
Alignment explanation
Indices: 26960--27039 Score: 78
Period size: 28 Copynumber: 2.7 Consensus size: 29
26950 AGTAAATAAT
*
26960 AAAAAATTATTTTTAT-ATTAATATTTTA
1 AAAAAAATATTTTTATAATTAATATTTTA
26988 AAAAATTATATATTTTTATAATTAA-A-TTTA
1 AAAAA--A-ATATTTTTATAATTAATATTTTA
27018 AATAAAAATATTATTT-TAATTA
1 AA-AAAAATATT-TTTATAATTA
27040 TTAAATAATT
Statistics
Matches: 45, Mismatches: 1, Indels: 12
0.78 0.02 0.21
Matches are distributed among these distances:
28 16 0.36
29 4 0.09
30 7 0.16
31 13 0.29
32 5 0.11
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (29 bp):
AAAAAAATATTTTTATAATTAATATTTTA
Found at i:27363 original size:10 final size:11
Alignment explanation
Indices: 27350--27383 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
27340 TAGTGTTTAG
27350 TTTATTTT-AT
1 TTTATTTTGAT
27360 TTTATTTTGAT
1 TTTATTTTGAT
*
27371 TTAATTTTGAT
1 TTTATTTTGAT
27382 TT
1 TT
27384 AAATGATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 8 0.36
11 14 0.64
ACGTcount: A:0.21, C:0.00, G:0.06, T:0.74
Consensus pattern (11 bp):
TTTATTTTGAT
Found at i:28020 original size:2 final size:2
Alignment explanation
Indices: 28013--28076 Score: 101
Period size: 2 Copynumber: 32.0 Consensus size: 2
28003 TAAAATCTTT
* * *
28013 TA TA TA TA TA TA TA CA CA TA CA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
28055 TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA
28077 AGAAGTCAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (2 bp):
TA
Found at i:28933 original size:16 final size:16
Alignment explanation
Indices: 28895--28962 Score: 50
Period size: 16 Copynumber: 4.2 Consensus size: 16
28885 AAATAATTAA
* * *
28895 AATATAATGTTAAAAG
1 AATATAATATTAATAT
*
28911 AAAATAATATTAATAT
1 AATATAATATTAATAT
28927 AATATAAATATATAATAT
1 AATAT-AATAT-TAATAT
* *
28945 -AT-TAAAATTTATAT
1 AATATAATATTAATAT
28959 AATA
1 AATA
28963 CAAATTATTA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
14 5 0.12
15 6 0.15
16 17 0.41
17 7 0.17
18 6 0.15
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (16 bp):
AATATAATATTAATAT
Found at i:29009 original size:20 final size:19
Alignment explanation
Indices: 28984--29021 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
28974 TTTATTACTA
*
28984 TATAATATTTTAAATATAAT
1 TATAATATGTTAAA-ATAAT
29004 TATAATATGTTAAAATAA
1 TATAATATGTTAAAATAA
29022 AAATACAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (19 bp):
TATAATATGTTAAAATAAT
Found at i:35435 original size:39 final size:39
Alignment explanation
Indices: 35392--35480 Score: 92
Period size: 39 Copynumber: 2.3 Consensus size: 39
35382 GACGACAATG
*
35392 TTTATTGAAATGCAAAAGAT-GCAACTAATGCATGAATTT
1 TTTATTGAAATGCAAAAGATAGCAA-TAATGCATGAATTA
** ** *
35431 TTTATT-AGAATTTAAAAGATATTAATAATGTATGAATTA
1 TTTATTGA-AATGCAAAAGATAGCAATAATGCATGAATTA
35470 TTTATTGAAAT
1 TTTATTGAAAT
35481 CTGAAAGATA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
38 1 0.02
39 37 0.90
40 3 0.07
ACGTcount: A:0.43, C:0.04, G:0.12, T:0.40
Consensus pattern (39 bp):
TTTATTGAAATGCAAAAGATAGCAATAATGCATGAATTA
Found at i:35488 original size:39 final size:39
Alignment explanation
Indices: 35417--35491 Score: 98
Period size: 39 Copynumber: 1.9 Consensus size: 39
35407 AAGATGCAAC
* *
35417 TAATGCATGAATTTTTTATTAGAATTTAAAAGATATTAA
1 TAATGCATGAATTATTTATTAGAATCTAAAAGATATTAA
* *
35456 TAATGTATGAATTATTTATT-GAAATCTGAAAGATAT
1 TAATGCATGAATTATTTATTAG-AATCTAAAAGATAT
35492 GGTTAATATA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.03
39 30 0.97
ACGTcount: A:0.43, C:0.03, G:0.12, T:0.43
Consensus pattern (39 bp):
TAATGCATGAATTATTTATTAGAATCTAAAAGATATTAA
Found at i:35759 original size:93 final size:93
Alignment explanation
Indices: 35656--35842 Score: 250
Period size: 93 Copynumber: 2.0 Consensus size: 93
35646 TCAAATTGTG
* ** * * *
35656 AGGATTAAACTAATGTATGGATTATTTTTGAGAATCATATT-TATTTTAGTAGAAATAAAAAAAA
1 AGGATTAAACTAATGCATAAATTATTTTTGAGAATCAAATTCT-TTTTAGTAAAAAGAAAAAAAA
35720 AGTTGACTGATTGTAAATATCAGACTATA
65 AGTTGACTGATTGTAAATATCAGACTATA
* **
35749 AGGATTAAACTAATGCATAAATTATTTTTGAGAATCAAATTCTTTTTGGTAAAAAGGGAAAAAAA
1 AGGATTAAACTAATGCATAAATTATTTTTGAGAATCAAATTCTTTTTAGTAAAAAGAAAAAAAAA
* * *
35814 GTTGATTGATTGTAAATTTCATACTATA
66 GTTGACTGATTGTAAATATCAGACTATA
35842 A
1 A
35843 AGATAGGACA
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
93 80 0.99
94 1 0.01
ACGTcount: A:0.43, C:0.06, G:0.15, T:0.36
Consensus pattern (93 bp):
AGGATTAAACTAATGCATAAATTATTTTTGAGAATCAAATTCTTTTTAGTAAAAAGAAAAAAAAA
GTTGACTGATTGTAAATATCAGACTATA
Found at i:37596 original size:22 final size:22
Alignment explanation
Indices: 37568--37612 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37558 CCGAAGGACG
37568 ACTTGCTGGTTTATATATATAT
1 ACTTGCTGGTTTATATATATAT
37590 ACTTGCTGGTTTATATATATAT
1 ACTTGCTGGTTTATATATATAT
37612 A
1 A
37613 TATATATATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.09, G:0.13, T:0.49
Consensus pattern (22 bp):
ACTTGCTGGTTTATATATATAT
Found at i:38071 original size:29 final size:30
Alignment explanation
Indices: 38039--38096 Score: 84
Period size: 29 Copynumber: 2.0 Consensus size: 30
38029 TTATTATTTA
38039 TAAATAATAAAT-ATTTTTA-TAATTAAATT
1 TAAATAA-AAATAATTTTTATTAATTAAATT
*
38068 TAAATAAAAATAATTTTTATTTATTAAAT
1 TAAATAAAAATAATTTTTATTAATTAAAT
38097 AATAATTCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 4 0.15
29 14 0.54
30 8 0.31
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (30 bp):
TAAATAAAAATAATTTTTATTAATTAAATT
Found at i:38216 original size:16 final size:17
Alignment explanation
Indices: 38185--38217 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
38175 CGATCGATTC
*
38185 AATTTATTTAAATCGAA
1 AATTGATTTAAATCGAA
38202 AATTGATTT-AATCGAA
1 AATTGATTTAAATCGAA
38218 TTTAGTGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.45, C:0.06, G:0.09, T:0.39
Consensus pattern (17 bp):
AATTGATTTAAATCGAA
Found at i:38436 original size:14 final size:14
Alignment explanation
Indices: 38417--38449 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
38407 GATCAAAATT
38417 TAAATCAAATT-AAC
1 TAAATC-AATTAAAC
38431 TAAATCAATTAAAC
1 TAAATCAATTAAAC
38445 TAAAT
1 TAAAT
38450 TTAATTTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 14 0.78
ACGTcount: A:0.58, C:0.12, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAATCAATTAAAC
Found at i:38765 original size:20 final size:20
Alignment explanation
Indices: 38723--38765 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
38713 AATTTTAGTG
* * *
38723 TTTAATTTATTTTATATTGA
1 TTTAATTTAATTAATATTAA
*
38743 TTTAATTTAATTAATTTTAA
1 TTTAATTTAATTAATATTAA
38763 TTT
1 TTT
38766 TAGTTTAGAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TTTAATTTAATTAATATTAA
Found at i:39209 original size:2 final size:2
Alignment explanation
Indices: 39204--39253 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
39194 TGATCTTTTT
39204 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
39246 TA TA TA TA
1 TA TA TA TA
39254 AAGAAAGCCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:39718 original size:16 final size:16
Alignment explanation
Indices: 39699--39729 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39689 ATTAATTTAT
39699 TAATATATTAAATATA
1 TAATATATTAAATATA
*
39715 TAATATTTTAAATAT
1 TAATATATTAAATAT
39730 TTTCATCGGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TAATATATTAAATATA
Found at i:42708 original size:20 final size:18
Alignment explanation
Indices: 42685--42724 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
42675 GCCCAAAATT
*
42685 AATTAAATAATGAATATATA
1 AATTAAAAAAT-AATAT-TA
42705 AATTAAAAAATAATATTA
1 AATTAAAAAATAATATTA
42723 AA
1 AA
42725 GCCTGACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.33
Consensus pattern (18 bp):
AATTAAAAAATAATATTA
Found at i:43125 original size:2 final size:2
Alignment explanation
Indices: 43118--43153 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
43108 AAATAAATTA
43118 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
43154 GAATAGTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:44939 original size:16 final size:17
Alignment explanation
Indices: 44917--44956 Score: 64
Period size: 16 Copynumber: 2.4 Consensus size: 17
44907 TTTTAAAGTA
*
44917 AAATATAAATTTAATAT
1 AAATATAAATATAATAT
44934 -AATATAAATATAATAT
1 AAATATAAATATAATAT
44950 AAATATA
1 AAATATA
44957 TGAGTCTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.71
17 6 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATATAAATATAATAT
Found at i:44943 original size:11 final size:11
Alignment explanation
Indices: 44929--44956 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
44919 ATATAAATTT
44929 AATATAATATA
1 AATATAATATA
44940 AATATAATATA
1 AATATAATATA
44951 AATATA
1 AATATA
44957 TGAGTCTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATATAATATA
Found at i:45704 original size:17 final size:17
Alignment explanation
Indices: 45672--45719 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
45662 ATTTAACATC
*
45672 TATATAATAT-AAATTAT
1 TATA-AATATAAAATTAA
45689 TA-AAATATTAAAATTAA
1 TATAAATA-TAAAATTAA
45706 TATAAATATAAAAT
1 TATAAATATAAAAT
45720 ACTTTAAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
15 4 0.15
16 2 0.07
17 16 0.59
18 5 0.19
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
TATAAATATAAAATTAA
Found at i:45726 original size:27 final size:26
Alignment explanation
Indices: 45676--45776 Score: 80
Period size: 27 Copynumber: 3.7 Consensus size: 26
45666 AACATCTATA
45676 TAATATAAATTATTAAAATA-TTAAAAT
1 TAATATAAA-TA-TAAAATATTTAAAAT
45703 TAATATAAATATAAAATACTTTAAACAT
1 TAATATAAATATAAAATA-TTTAAA-AT
* * * *
45731 GATTATAAAATAATAAAATATAT-AATT
1 TAATAT-AAAT-ATAAAATATTTAAAAT
45758 ATAATATAAATATATAAAT
1 -TAATATAAATATA-AAAT
45777 TACCTCCTAT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
25 7 0.11
26 5 0.08
27 23 0.38
28 12 0.20
29 6 0.10
30 8 0.13
ACGTcount: A:0.59, C:0.02, G:0.01, T:0.38
Consensus pattern (26 bp):
TAATATAAATATAAAATATTTAAAAT
Found at i:46931 original size:13 final size:14
Alignment explanation
Indices: 46907--46952 Score: 67
Period size: 13 Copynumber: 3.2 Consensus size: 14
46897 TTTAATAGTT
46907 TTTATTTAAATTTAA
1 TTTA-TTAAATTTAA
46922 TTTA-TAAATTTAA
1 TTTATTAAATTTAA
46935 TTTATTAAATATTAA
1 TTTATTAAAT-TTAA
46950 TTT
1 TTT
46953 TATATTAATA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
13 13 0.45
14 5 0.17
15 11 0.38
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTATTAAATTTAA
Found at i:46965 original size:28 final size:27
Alignment explanation
Indices: 46907--46967 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
46897 TTTAATAGTT
*
46907 TTTATTTAAATTTAATTTATAAATTTAA
1 TTTA-TTAAATTTAATTTATAAATTAAA
*
46935 TTTATTAAATATTAATTT-TATATTAATA
1 TTTATTAAAT-TTAATTTATAAATTAA-A
46963 TTTAT
1 TTTAT
46968 ATATTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
27 12 0.41
28 17 0.59
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (27 bp):
TTTATTAAATTTAATTTATAAATTAAA
Found at i:47420 original size:23 final size:23
Alignment explanation
Indices: 47394--47440 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
47384 TTAATTATAA
*
47394 AATATATAAATATTAATATAAAT
1 AATATATAAATAATAATATAAAT
* * *
47417 AATATTTTAATAATATTATAAAT
1 AATATATAAATAATAATATAAAT
47440 A
1 A
47441 GTAAAATAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
AATATATAAATAATAATATAAAT
Found at i:48838 original size:20 final size:20
Alignment explanation
Indices: 48785--48838 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
48775 AATTATTTTT
*
48785 ATTTAACTTTA-ATTTATAA
1 ATTTAATTTTATATTTATAA
48804 ATTT-ATTTTATTATTTA-AA
1 ATTTAATTTTA-TATTTATAA
48823 ATATTAATTTTATATT
1 AT-TTAATTTTATATT
48839 AATATTTATA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.17
19 8 0.27
20 11 0.37
21 6 0.20
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
ATTTAATTTTATATTTATAA
Found at i:49058 original size:16 final size:13
Alignment explanation
Indices: 49016--49070 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 13
49006 CACAAATACG
*
49016 ATATAAAATAAAT
1 ATATAATATAAAT
*
49029 ATATAATATTAAT
1 ATATAATATAAAT
49042 ATGATACGATATAAAT
1 AT-ATA--ATATAAAT
49058 ATAATAATATAAA
1 AT-ATAATATAAA
49071 ATTTTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
13 13 0.37
14 10 0.29
16 12 0.34
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (13 bp):
ATATAATATAAAT
Found at i:57844 original size:4 final size:4
Alignment explanation
Indices: 57835--57866 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
57825 TGCCAGCTTG
*
57835 TATT TATT TATT TATT TAAT TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT
57867 CTTTTTTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:58883 original size:3 final size:3
Alignment explanation
Indices: 58875--58913 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
58865 CTACAAAGCT
58875 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58914 ATTTGCAAGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:59878 original size:3 final size:3
Alignment explanation
Indices: 59870--59913 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
59860 CAACTAAACT
59870 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
59914 CTTGGAAAAG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:60154 original size:31 final size:29
Alignment explanation
Indices: 60113--60201 Score: 90
Period size: 31 Copynumber: 2.9 Consensus size: 29
60103 TAGACTGTAT
*
60113 AAATTTTATTTTACTATTAATAATAATATTA
1 AAATATTATTTTA-TATTAATAATAATA-TA
* **
60144 AACTATTATTTTTATATTAAATTTTAATATA
1 AAATATTA-TTTTATATT-AATAATAATATA
60175 AAATATTATTTTATTATTAA-AATAATA
1 AAATATTATTTTA-TATTAATAATAATA
60202 ATCCAAGCTA
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
29 5 0.10
30 7 0.15
31 23 0.48
32 13 0.27
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (29 bp):
AAATATTATTTTATATTAATAATAATATA
Found at i:61678 original size:5 final size:5
Alignment explanation
Indices: 61670--61781 Score: 61
Period size: 5 Copynumber: 22.2 Consensus size: 5
61660 GATAATTTTA
* * * *
61670 AATAT AATAT AAT-T -ATAA AATATT CATAT AATAT AAAAT AATTAA AATAT
1 AATAT AATAT AATAT AATAT AATA-T AATAT AATAT AATAT AA-TAT AATAT
* * ** * *
61720 AATAT GATAT AA-AT AAAAT AATAT AAATAT GTTAA AAT-T TATAT AATAT
1 AATAT AATAT AATAT AATAT AATAT -AATAT AATAT AATAT AATAT AATAT
61769 GAATTAT AATAT A
1 -AA-TAT AATAT A
61782 TTAAAATTTA
Statistics
Matches: 79, Mismatches: 19, Indels: 18
0.68 0.16 0.16
Matches are distributed among these distances:
3 2 0.03
4 7 0.09
5 52 0.66
6 15 0.19
7 3 0.04
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:61721 original size:21 final size:21
Alignment explanation
Indices: 61675--61788 Score: 66
Period size: 21 Copynumber: 5.7 Consensus size: 21
61665 TTTTAAATAT
61675 AATATAATTATAAAAT-ATT--
1 AATATAA-TATAAAATAATTAA
*
61694 CATATAATATAAAATAATTAA
1 AATATAATATAAAATAATTAA
* * *
61715 AATATAATATGATATAAAT-A
1 AATATAATATAAAATAATTAA
*
61735 AA-ATAATAT-AAATATGTTAA
1 AATATAATATAAAATA-ATTAA
* * *
61755 AAT-TTATATAATATGAATTAT
1 AATATAATATAAAAT-AATTAA
61776 AATAT-AT-TAAAAT
1 AATATAATATAAAAT
61789 TTATATAAAG
Statistics
Matches: 73, Mismatches: 13, Indels: 17
0.71 0.13 0.17
Matches are distributed among these distances:
18 12 0.16
19 17 0.23
20 16 0.22
21 26 0.36
22 2 0.03
ACGTcount: A:0.58, C:0.01, G:0.03, T:0.39
Consensus pattern (21 bp):
AATATAATATAAAATAATTAA
Found at i:61733 original size:16 final size:16
Alignment explanation
Indices: 61653--61749 Score: 73
Period size: 16 Copynumber: 6.3 Consensus size: 16
61643 CCCTATACCT
* *
61653 AATATAAGATAATTTTA
1 AATATAATATAA-TATA
61670 AATATAATATAATTATA
1 AATATAATATAA-TATA
*
61687 AA-AT-AT-TCATAT-
1 AATATAATATAATATA
*
61699 AATATAAAATAAT-TAA
1 AATATAATATAATAT-A
*
61715 AATATAATATGATATA
1 AATATAATATAATATA
61731 AATA-AA-ATAATATA
1 AATATAATATAATATA
61745 AATAT
1 AATAT
61750 GTTAAAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 16
0.73 0.09 0.18
Matches are distributed among these distances:
12 2 0.03
13 5 0.08
14 15 0.23
15 7 0.11
16 18 0.28
17 18 0.28
ACGTcount: A:0.60, C:0.01, G:0.02, T:0.37
Consensus pattern (16 bp):
AATATAATATAATATA
Found at i:61735 original size:14 final size:14
Alignment explanation
Indices: 61695--61748 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
61685 TAAAATATTC
61695 ATATAATATAAAATA
1 ATATAA-ATAAAATA
*
61710 AT-TAAAATATAATATG
1 ATAT-AAATA-AA-ATA
61726 ATATAAATAAAATA
1 ATATAAATAAAATA
61740 ATATAAATA
1 ATATAAATA
61749 TGTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 15 0.45
15 8 0.24
16 9 0.27
17 1 0.03
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (14 bp):
ATATAAATAAAATA
Found at i:61963 original size:21 final size:20
Alignment explanation
Indices: 61914--61963 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 20
61904 AAATATGACG
61914 TAACATAAA--AAAATAATA
1 TAACATAAATTAAAATAATA
* *
61932 TAA-ATATATTAAAATTTATA
1 TAACATAAATTAAAA-TAATA
61952 TAACATAAATTA
1 TAACATAAATTA
61964 TTAATAAATC
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
17 4 0.16
18 3 0.12
19 4 0.16
20 7 0.28
21 7 0.28
ACGTcount: A:0.62, C:0.04, G:0.00, T:0.34
Consensus pattern (20 bp):
TAACATAAATTAAAATAATA
Found at i:64181 original size:17 final size:18
Alignment explanation
Indices: 64154--64199 Score: 60
Period size: 17 Copynumber: 2.6 Consensus size: 18
64144 ATTTTTTTAA
64154 AAATAATTTAATAA-ATTT
1 AAAT-ATTTAATAAGATTT
*
64172 ACATATTTAA-AAGATTT
1 AAATATTTAATAAGATTT
64189 AAATATTTAAT
1 AAATATTTAAT
64200 GAATATTACT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
16 2 0.08
17 19 0.79
18 3 0.12
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (18 bp):
AAATATTTAATAAGATTT
Found at i:65965 original size:15 final size:15
Alignment explanation
Indices: 65927--65966 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 15
65917 ACGATTAATG
65927 ATATTTAATAATTTTA
1 ATATTT-ATAATTTTA
65943 A-A-TT-TAATTTTA
1 ATATTTATAATTTTA
65955 ATATTTATAATT
1 ATATTTATAATT
65967 ATTTTTTTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 7
0.75 0.00 0.25
Matches are distributed among these distances:
12 9 0.43
13 1 0.05
14 4 0.19
15 6 0.29
16 1 0.05
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATTTATAATTTTA
Found at i:68365 original size:14 final size:14
Alignment explanation
Indices: 68346--68389 Score: 56
Period size: 14 Copynumber: 3.2 Consensus size: 14
68336 TATTATTATT
68346 TAAAAATATTAATA
1 TAAAAATATTAATA
68360 TAAAAA-ATTAA-A
1 TAAAAATATTAATA
*
68372 TATAAAATAATAATA
1 TA-AAAATATTAATA
68387 TAA
1 TAA
68390 TATTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 3 0.12
13 9 0.35
14 11 0.42
15 3 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (14 bp):
TAAAAATATTAATA
Found at i:68386 original size:13 final size:13
Alignment explanation
Indices: 68348--68389 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
68338 TTATTATTTA
*
68348 AAAATATTAATAT
1 AAAATAATAATAT
68361 AAAA-AATTAAATAT
1 AAAATAA-T-AATAT
68375 AAAATAATAATAT
1 AAAATAATAATAT
68388 AA
1 AA
68390 TATTAAATTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
12 1 0.04
13 12 0.48
14 10 0.40
15 2 0.08
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (13 bp):
AAAATAATAATAT
Found at i:68830 original size:18 final size:20
Alignment explanation
Indices: 68804--68849 Score: 60
Period size: 18 Copynumber: 2.4 Consensus size: 20
68794 ATATTATAAA
*
68804 ATTTTAATTTT-TTTT-AAT
1 ATTTAAATTTTATTTTGAAT
68822 ATTTAAATTTTATTTTGAAT
1 ATTTAAATTTTATTTTGAAT
*
68842 TTTTAAAT
1 ATTTAAAT
68850 CAAGTCTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 10 0.42
19 4 0.17
20 10 0.42
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
ATTTAAATTTTATTTTGAAT
Found at i:68846 original size:20 final size:18
Alignment explanation
Indices: 68805--68849 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
68795 TATTATAAAA
68805 TTTT-AATTTTTTTTAAT
1 TTTTAAATTTTTTTTAAT
*
68822 ATTTAAATTTTATTTTGAAT
1 TTTTAAATTTT-TTTT-AAT
68842 TTTTAAAT
1 TTTTAAAT
68850 CAAGTCTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 3 0.13
18 6 0.26
19 4 0.17
20 10 0.43
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TTTTAAATTTTTTTTAAT
Found at i:72124 original size:20 final size:22
Alignment explanation
Indices: 72079--72125 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
72069 TTAGTTCGTT
* *
72079 TAAATGATTTTAAATATTTAAA
1 TAAATAATTTTAAATATTCAAA
72101 -AAATAATTTT-AATA-TCAAA
1 TAAATAATTTTAAATATTCAAA
72120 TAAATA
1 TAAATA
72126 TTAAATATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.18
20 9 0.41
21 9 0.41
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (22 bp):
TAAATAATTTTAAATATTCAAA
Found at i:72602 original size:14 final size:14
Alignment explanation
Indices: 72583--72612 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
72573 CCCCCCCCCC
72583 AAAAAAAAAAACAA
1 AAAAAAAAAAACAA
*
72597 AAAAAAAAAAAGAA
1 AAAAAAAAAAACAA
72611 AA
1 AA
72613 GCTCCACTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.93, C:0.03, G:0.03, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAACAA
Found at i:78974 original size:563 final size:565
Alignment explanation
Indices: 78198--79260 Score: 1871
Period size: 563 Copynumber: 1.9 Consensus size: 565
78188 TTTATGTTAT
*
78198 CCAACTTGGAATTTCTCATACATTAAATCAGAGATTAATCAGAGAAACTGATTTTGAGACAGCAT
1 CCAACTTGGAATTTCTCATACATTAAATCAGAGATTAATCAGAGAAACTGATTTGGAGACAGCAT
* *
78263 AAAAGACCAAGGTATAACTATTAATCATAAACAACGCCAAGAACATGACAAAACCCAGCAATAAT
66 AAAAGACCAAGGTATAACTATTAATCACAAACAACGCCAAGAACATGACAAAAACCAGCAATAAT
*
78328 AATTGTTGTTTCACACAAGATTTTCTGTTCCAAAAATCTTCAATTCTTGCCCAGAAAACAGAAGT
131 AATTGTTGTTTCACACAAGATTTTCTGCTCCAAAAATCTTCAATTCTTGCCCAGAAAACAGAAGT
** **
78393 GCTTATGCTTATGATTCAGCACAGTAAGGT-ACTGGATTTCTCAATCAAAACAATATGAGACTAC
196 GCTTACACTTATGATTCAGCACAGTAAGGTGACCAGATTTCTCAATCAAAACAATATGAGACTAC
* *
78457 TGCAAGGTTATTTAAACAATGATGAAAGATTTATCTTAATTCTGTTAAAGCCTTCAACTTAAACC
261 CGCAAGGTTATTTAAACAATGATGAAACATTTATCTTAATTCTGTTAAAGCCTTCAACTTAAACC
*
78522 AATTGGCAGCATAATAAGAAATAAGACTAGAATAAGCCTCAAACCATA-TGAATGATGGATGTAA
326 AATTGGCAGCATAATAAGAAATAAGACTAGAATAAGCCTCAAACCATACT-AATGATGAATGTAA
*
78586 CATCATATTGATGAAAATAA-CCCAAACAGCGGACTACAACACCTGGACCACAAATATCTAGGAC
390 CATCATATTGATGAAAATAAGCCCAAACAGCAGACTACAACACCTGGACCACAAATATCTAGGAC
78650 TTTATGACATATTAAAGCAACCGACTTATAAATAATTGCAAAGTTTTGGTAAATCCAAACAACCT
455 TTTATGACATATTAAAGCAACCGACTTATAAATAATTGCAAAGTTTTGGTAAATCCAAACAACCT
78715 CAAAACAAATTGATGTCACATGCAAAAATACGGACCAAATTCCAAA
520 CAAAACAAATTGATGTCACATGCAAAAATACGGACCAAATTCCAAA
* *
78761 CCAACTTGGAATTTCTCATACATTAAATCAGAGATTAATCAGAGAAACTGATTTGGAGGCATCAT
1 CCAACTTGGAATTTCTCATACATTAAATCAGAGATTAATCAGAGAAACTGATTTGGAGACAGCAT
* *
78826 CAAAGACCAAGGTATAACTATTAATCACAAACAAGGCCAAGAACATGACAAAAACCAGCAATAAT
66 AAAAGACCAAGGTATAACTATTAATCACAAACAACGCCAAGAACATGACAAAAACCAGCAATAAT
*
78891 AATTGTTGTTTCACACAAGATTTTTTGCTCCAAAAATCTTCAATTCTTGCCCAGAAAACAGAAGT
131 AATTGTTGTTTCACACAAGATTTTCTGCTCCAAAAATCTTCAATTCTTGCCCAGAAAACAGAAGT
*
78956 GCTTACACTTATGATTCAGCACTGTAAGGTGACCAGATTTCTCAATCAAAACAATATGAGACTAC
196 GCTTACACTTATGATTCAGCACAGTAAGGTGACCAGATTTCTCAATCAAAACAATATGAGACTAC
* *
79021 CGCAAGGTTATTTAAACAATGATGAAACATTTATTTTAATTCTGTTAAAGCCTTCAATTTAAACC
261 CGCAAGGTTATTTAAACAATGATGAAACATTTATCTTAATTCTGTTAAAGCCTTCAACTTAAACC
*
79086 AATTGGCAGCATAATAAGAAATAAGACTAGAATGAGCCTCAAACCATACTAATGATGAATGTAAC
326 AATTGGCAGCATAATAAGAAATAAGACTAGAATAAGCCTCAAACCATACTAATGATGAATGTAAC
*
79151 ATCATATTGATGAAAATAAGCCCATACAGCAGACTACAACACCTGGACCACAAATATCTAGGACT
391 ATCATATTGATGAAAATAAGCCCAAACAGCAGACTACAACACCTGGACCACAAATATCTAGGACT
* * *
79216 TTATGACATATTAAAGCATCCGACTTATGAATAATTGCCAAGTTT
456 TTATGACATATTAAAGCAACCGACTTATAAATAATTGCAAAGTTT
79261 ATAATCAATT
Statistics
Matches: 472, Mismatches: 25, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
563 213 0.45
564 173 0.37
565 86 0.18
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (565 bp):
CCAACTTGGAATTTCTCATACATTAAATCAGAGATTAATCAGAGAAACTGATTTGGAGACAGCAT
AAAAGACCAAGGTATAACTATTAATCACAAACAACGCCAAGAACATGACAAAAACCAGCAATAAT
AATTGTTGTTTCACACAAGATTTTCTGCTCCAAAAATCTTCAATTCTTGCCCAGAAAACAGAAGT
GCTTACACTTATGATTCAGCACAGTAAGGTGACCAGATTTCTCAATCAAAACAATATGAGACTAC
CGCAAGGTTATTTAAACAATGATGAAACATTTATCTTAATTCTGTTAAAGCCTTCAACTTAAACC
AATTGGCAGCATAATAAGAAATAAGACTAGAATAAGCCTCAAACCATACTAATGATGAATGTAAC
ATCATATTGATGAAAATAAGCCCAAACAGCAGACTACAACACCTGGACCACAAATATCTAGGACT
TTATGACATATTAAAGCAACCGACTTATAAATAATTGCAAAGTTTTGGTAAATCCAAACAACCTC
AAAACAAATTGATGTCACATGCAAAAATACGGACCAAATTCCAAA
Found at i:82499 original size:42 final size:41
Alignment explanation
Indices: 82449--82528 Score: 117
Period size: 42 Copynumber: 1.9 Consensus size: 41
82439 TTAAAACTTG
*
82449 TCACTTTACAAAA-TTTAATCTTAATCTTAAATTTACATTTTA
1 TCACTTTACAAAACTTT-ATCCTAAT-TTAAATTTACATTTTA
*
82491 TCACTTTACAAAACTTTATCCTAATTTAAGTTTACATT
1 TCACTTTACAAAACTTTATCCTAATTTAAATTTACATT
82529 AAAAAAGGTA
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
41 12 0.34
42 20 0.57
43 3 0.09
ACGTcount: A:0.36, C:0.16, G:0.01, T:0.46
Consensus pattern (41 bp):
TCACTTTACAAAACTTTATCCTAATTTAAATTTACATTTTA
Found at i:84865 original size:79 final size:79
Alignment explanation
Indices: 84711--85734 Score: 1665
Period size: 79 Copynumber: 12.9 Consensus size: 79
84701 TAGAGATAAC
* * * * * *
84711 AACGGGGCTAGAGTATCCCCGATTATGGAAAAATTG-TGTTCTAAAAAAATAAAATCGGGGTTAG
1 AACGGGGTTGGAGTATCCCCGATTAT-GAAAAATTGATGTT-T-TAGAAATAAAACCGGGGTTGG
*
84775 AGTATCCCCTCGGAAAT
63 AGTATCCCCTCGAAAAT
* * * * *
84792 AACGGGGTTTGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
84857 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
* * *
84871 AACGAGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
84936 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
84950 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGCTGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85015 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
* * *
85029 ATCGGGGTTGGAGTATCCTCGATTATGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
*
85094 ATCCCCTCGGAAAT
66 ATCCCCTCGAAAAT
* * * * *
85108 AACGGGGTTGGAGTAT-CCCGATTGTGAAAAATTAATATTTTAGAAATAAAATCGAGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85172 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
* * *
85186 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85251 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
* * *
85265 AACAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGAAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85330 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
85344 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85409 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
85423 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85488 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
85502 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
* *
85567 ATCCCTTCGGAAAT
66 ATCCCCTCGAAAAT
*
85581 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATATTTTAGAAATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85646 ATCCCCTCGAAAAT
66 ATCCCCTCGAAAAT
*
85660 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGT
1 AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
85725 ATCCCCTCGA
66 ATCCCCTCGA
85735 TTAAAGGAAA
Statistics
Matches: 883, Mismatches: 58, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
78 72 0.08
79 776 0.88
80 9 0.01
81 26 0.03
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (79 bp):
AACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGT
ATCCCCTCGAAAAT
Found at i:85754 original size:53 final size:51
Alignment explanation
Indices: 85662--85788 Score: 163
Period size: 53 Copynumber: 2.5 Consensus size: 51
85652 TCGAAAATAA
*
85662 CGGGGTTGGAGTAT-CCCCGATTATGAAAAATTGATGTTTT-AGAGATAAAAC
1 CGGGGTTGGAGTATCCCCCGATTA-GAAAAATTGATGTTTTGA-AAATAAAAC
*
85713 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTATCCCC-CGATTAGAA--AAATTGATGTTTTGAAAATAAAAC
85766 CGGGGTTGGAGTAT-CCCCGATTA
1 CGGGGTTGGAGTATCCCCCGATTA
85789 TGAGCAGTTG
Statistics
Matches: 69, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
51 22 0.32
52 6 0.09
53 40 0.58
54 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCCGATTAGAAAAATTGATGTTTTGAAAATAAAAC
Found at i:86563 original size:43 final size:43
Alignment explanation
Indices: 86511--86606 Score: 147
Period size: 43 Copynumber: 2.2 Consensus size: 43
86501 TCTCGCTGGA
86511 GCTGCTGTTGCATGCTGGAGCTGCAATCGCTGCTGGAGTTGCT
1 GCTGCTGTTGCATGCTGGAGCTGCAATCGCTGCTGGAGTTGCT
* * * * *
86554 GTTGTTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCATGCTGGAGCTGCAATCGCTGCTGGAGTTGCT
86597 GCTGCTGTTG
1 GCTGCTGTTG
86607 GAGCTGCTGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.08, C:0.20, G:0.38, T:0.34
Consensus pattern (43 bp):
GCTGCTGTTGCATGCTGGAGCTGCAATCGCTGCTGGAGTTGCT
Found at i:86618 original size:55 final size:55
Alignment explanation
Indices: 86559--86683 Score: 142
Period size: 55 Copynumber: 2.3 Consensus size: 55
86549 TTGCTGTTGT
* ** * *
86559 TGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCTGCTGCTGTTGGAGCTGC
1 TGTTGCGTGCTGGAGCTGCAGCCGCCGCTGGAGCTGCTGCTGCTGCTGGAGCTGC
* * ** *
86614 TGTTGCGTGCTAGAACTGTTGCCGCCGCTGGAGCTGGTGCTGCTGCTGGAGCTGC
1 TGTTGCGTGCTGGAGCTGCAGCCGCCGCTGGAGCTGCTGCTGCTGCTGGAGCTGC
* *
86669 TTTTGCGTGTTGGAG
1 TGTTGCGTGCTGGAG
86684 TCGTTGGCTA
Statistics
Matches: 56, Mismatches: 14, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.08, C:0.21, G:0.39, T:0.32
Consensus pattern (55 bp):
TGTTGCGTGCTGGAGCTGCAGCCGCCGCTGGAGCTGCTGCTGCTGCTGGAGCTGC
Found at i:86663 original size:18 final size:18
Alignment explanation
Indices: 86566--86669 Score: 84
Period size: 18 Copynumber: 5.7 Consensus size: 18
86556 TGTTGTTGCG
* *
86566 TGCTGGAGCTGCAG-TCGT
1 TGCTGGAGCTGCTGCT-GC
*
86584 TGCTGGAGTTGCTGCTGC
1 TGCTGGAGCTGCTGCTGC
* *
86602 TGTTGGAGCTGCTGTTGC
1 TGCTGGAGCTGCTGCTGC
* * * *
86620 GTGCTAGAACTGTTGCCGC
1 -TGCTGGAGCTGCTGCTGC
* *
86639 CGCTGGAGCTGGTGCTGC
1 TGCTGGAGCTGCTGCTGC
86657 TGCTGGAGCTGCT
1 TGCTGGAGCTGCT
86670 TTTGCGTGTT
Statistics
Matches: 65, Mismatches: 19, Indels: 4
0.74 0.22 0.05
Matches are distributed among these distances:
18 52 0.80
19 13 0.20
ACGTcount: A:0.09, C:0.23, G:0.38, T:0.30
Consensus pattern (18 bp):
TGCTGGAGCTGCTGCTGC
Found at i:87026 original size:26 final size:26
Alignment explanation
Indices: 86992--87134 Score: 252
Period size: 26 Copynumber: 5.5 Consensus size: 26
86982 AATTTTTATG
*
86992 CTTTCCCATGCTGCAATTTT-TATTTG
1 CTTTCCCATGCTGC-ATTTTCTATTTC
87018 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
87044 CTTTCCCATGCTGCATTTTTTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
87070 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
87096 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
87122 CTTTCCCATGCTG
1 CTTTCCCATGCTG
87135 TAAGTTTTCA
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
25 5 0.04
26 108 0.96
ACGTcount: A:0.12, C:0.29, G:0.09, T:0.50
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTCTATTTC
Found at i:87298 original size:6 final size:6
Alignment explanation
Indices: 87264--87290 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
87254 ATTATTATTT
87264 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
87291 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:88049 original size:160 final size:161
Alignment explanation
Indices: 87754--88088 Score: 582
Period size: 160 Copynumber: 2.1 Consensus size: 161
87744 AAATAGGTCT
*
87754 TGCTCCTTGAGGACAAAGGGAGAGAAGAAAAGAAAAATGTCCTACTTCTTGAGGATAGAGTGAAA
1 TGCTCTTTGAGGACAAAGGGAGAGAAGAAAAGAAAAATGTCCTACTTCTTGAGGATAGAGTGAAA
** * *
87819 AAGAGTACGTCCCGTTTTTCGAGGATAAAGGAAAAAGGGAAACGCAATACGTCCTGCTCTTTGAG
66 AAGAAAACATCCCGTTTTTCGAGGATAAAGGAAAAAGGGAAACGAAATACGTCCTGCTCTTTGAG
*
87884 GATGAAAGCAGGAGAAAAATAAAGTGTATCC
131 GATGAAAGCAAGAGAAAAATAAAGTGTATCC
* *
87915 TGCTCTTTGAGGACAAAGGGAGAGAAGAAAAGGAAAATGTCCTGCTTCTTGAGGATAGAGTGAAA
1 TGCTCTTTGAGGACAAAGGGAGAGAAGAAAAGAAAAATGTCCTACTTCTTGAGGATAGAGTGAAA
*
87980 AA-AAAACATCCCGTTTTTCGAGGATAAAGGAAAAAGGGAAATGAAATACGTCCTGCTCTTTGAG
66 AAGAAAACATCCCGTTTTTCGAGGATAAAGGAAAAAGGGAAACGAAATACGTCCTGCTCTTTGAG
88044 GATGAAAGCAAGAGAAAAATAAAGTGTATCC
131 GATGAAAGCAAGAGAAAAATAAAGTGTATCC
88075 TGCTCTTTGAGGAC
1 TGCTCTTTGAGGAC
88089 TAAAAAGTGC
Statistics
Matches: 165, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
160 101 0.61
161 64 0.39
ACGTcount: A:0.39, C:0.14, G:0.26, T:0.21
Consensus pattern (161 bp):
TGCTCTTTGAGGACAAAGGGAGAGAAGAAAAGAAAAATGTCCTACTTCTTGAGGATAGAGTGAAA
AAGAAAACATCCCGTTTTTCGAGGATAAAGGAAAAAGGGAAACGAAATACGTCCTGCTCTTTGAG
GATGAAAGCAAGAGAAAAATAAAGTGTATCC
Found at i:88123 original size:28 final size:28
Alignment explanation
Indices: 88092--88177 Score: 68
Period size: 28 Copynumber: 3.1 Consensus size: 28
88082 TGAGGACTAA
88092 AAAGTGCCACCAACTCGTGTGGGCTTTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
** ** * * ***
88120 AAAG-GCGTCCTGCTC-TTTGAGAACTG
1 AAAGTGCCACCAACTCGTGTGGGCTTTG
88146 AAAAGTGCCACCAACTCGTGTGGGCTTTG
1 -AAAGTGCCACCAACTCGTGTGGGCTTTG
88175 AAA
1 AAA
88178 AGAAAAGGCG
Statistics
Matches: 37, Mismatches: 18, Indels: 6
0.61 0.30 0.10
Matches are distributed among these distances:
26 6 0.16
27 11 0.30
28 14 0.38
29 6 0.16
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (28 bp):
AAAGTGCCACCAACTCGTGTGGGCTTTG
Found at i:88263 original size:117 final size:117
Alignment explanation
Indices: 88072--88561 Score: 680
Period size: 117 Copynumber: 4.2 Consensus size: 117
88062 ATAAAGTGTA
* *
88072 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
88136 TTGAGAACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
66 TTGAGAACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
88188 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
*
88253 TTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
66 TTGAGAACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
* *
88305 TCATGCTCTTTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCGTC
1 TCCTGCTCTTTGAGGACTG-AAAAAGTGCCACCAACTTGTGTGGGCTTT--AA----AAGGCGTC
* * * *
88370 CTGCTCTTTGA-AGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGGAAAGGCG
59 CTGCTCTTTGAGA-ACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCG
88428 TCCTGCTCTTTGAGGACTAGAAAAA-TGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
1 TCCTGCTCTTTGAGGACT-GAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTC
* * * *
88492 TTTGAGGACTAAAAAACTGCCACCAACTTGTGTGGGCTTTG-AAAG---A--CG
65 TTTGAGAACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
88540 TCCTGCTCTTTGAGGACT-AAAA
1 TCCTGCTCTTTGAGGACTGAAAA
88562 GGGTGAAAGG
Statistics
Matches: 345, Mismatches: 14, Indels: 36
0.87 0.04 0.09
Matches are distributed among these distances:
110 4 0.01
112 20 0.06
114 1 0.00
116 39 0.11
117 114 0.33
118 57 0.17
120 4 0.01
122 27 0.08
123 57 0.17
124 22 0.06
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (117 bp):
TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCT
TTGAGAACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
Found at i:88369 original size:63 final size:62
Alignment explanation
Indices: 88072--88561 Score: 565
Period size: 56 Copynumber: 8.4 Consensus size: 62
88062 ATAAAGTGTA
*
88072 TCCTGCTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTT------GAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
* * * * *
88127 TCCTGCTCTTTGAGAACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
*
88188 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTT---A---AAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
* * * * * *
88244 TCCTGCTCTTTGAGAACT-GAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
*
88305 TCATGCTCTTTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
1 TCCTGCTCTTTGAGGACT-AAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG-GAAAGGCG
* * * *
88368 TCCTGCTCTTTGAAGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGGAAAGGCG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
88428 TCCTGCTCTTTGAGGACTAGAAAAA-TGCCACCAACTTGTGTGGGCTTT---A---AAAGGCG
1 TCCTGCTCTTTGAGGACTA-AAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
*
88484 TCCTGCTCTTTGAGGACTAAAAAACTGCCACCAACTTGTGTGGGCTTTGAAA--G--A--CG
1 TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
88540 TCCTGCTCTTTGAGGACTAAAA
1 TCCTGCTCTTTGAGGACTAAAA
88562 GGGTGAAAGG
Statistics
Matches: 385, Mismatches: 25, Indels: 49
0.84 0.05 0.11
Matches are distributed among these distances:
55 76 0.20
56 97 0.25
58 2 0.01
59 7 0.02
60 51 0.13
61 47 0.12
62 49 0.13
63 53 0.14
64 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (62 bp):
TCCTGCTCTTTGAGGACTAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGGAAAGGCG
Found at i:88409 original size:178 final size:176
Alignment explanation
Indices: 88072--88536 Score: 633
Period size: 178 Copynumber: 2.6 Consensus size: 176
88062 ATAAAGTGTA
*
88072 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTG-AAAGGCGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGCGTCCTGCTCT
* * *
88136 TTGAGAACTG--AAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTGCTCTTT
66 TTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
*
88199 GAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTT-A-AAAGGCG
131 GAAGACT-AAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAAAGGCG
* * *
88244 TCCTGCTCTTTGAGAACTGAAAGGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCAT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTT-----GAAAAGGCGTCCT
*
88309 GCTCTTTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCGTCCTG
61 GCTCTTTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAAGGCGTCCTG
* *
88373 CTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGGAAAGGCG
125 CTCTTTGAAGACTAAAAAGTGCCACCAACTTGTGTGGGCTTT--AA--GAAAGGCG
* *
88428 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGCGTCCTGCTC
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGCGTCCTGCTC
*
88492 TTTGAGGACT-AAAAAACTGCCACCAACTTGTGTGGGCTTTGAAAG
65 TTTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAG
88537 ACGTCCTGCT
Statistics
Matches: 260, Mismatches: 17, Indels: 26
0.86 0.06 0.09
Matches are distributed among these distances:
172 44 0.17
177 1 0.00
178 84 0.32
179 25 0.10
180 52 0.20
181 4 0.02
184 24 0.09
185 26 0.10
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (176 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGCGTCCTGCTCT
TTGAGGACTGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCGTCCTGCTCTTT
GAAGACTAAAAAGTGCCACCAACTTGTGTGGGCTTTAAGAAAGGCG
Found at i:89582 original size:11 final size:11
Alignment explanation
Indices: 89566--89599 Score: 50
Period size: 11 Copynumber: 2.9 Consensus size: 11
89556 AGCAGTTTCT
89566 TTTTTTTTTTG
1 TTTTTTTTTTG
89577 TTTTTTTTTTG
1 TTTTTTTTTTG
89588 TTGATTTTTTTT
1 TT--TTTTTTTT
89600 TTAGAAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 13 0.62
13 8 0.38
ACGTcount: A:0.03, C:0.00, G:0.09, T:0.88
Consensus pattern (11 bp):
TTTTTTTTTTG
Found at i:89584 original size:14 final size:15
Alignment explanation
Indices: 89565--89601 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
89555 AAGCAGTTTC
89565 TTTTTTTTT-TTG-T
1 TTTTTTTTTGTTGAT
89578 TTTTTTTTTGTTGAT
1 TTTTTTTTTGTTGAT
89593 TTTTTTTTT
1 TTTTTTTTT
89602 AGAAGAGAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 9 0.41
14 3 0.14
15 10 0.45
ACGTcount: A:0.03, C:0.00, G:0.08, T:0.89
Consensus pattern (15 bp):
TTTTTTTTTGTTGAT
Found at i:102160 original size:79 final size:79
Alignment explanation
Indices: 102053--102552 Score: 779
Period size: 79 Copynumber: 6.3 Consensus size: 79
102043 TGTTCTAAAA
* * * * *
102053 AAATAAAATCGGGGTTAGAGTATTCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
*
102118 AACTAATATTTTAG
66 AATTAATATTTTAG
*
102132 AAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
* * *
102197 AAATGATGTTTTAG
66 AATTAATATTTTAG
*
102211 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACAGGGTTGGAGTATCCCCGATTATGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
* *
102276 AATTGATGTTTTAG
66 AATTAATATTTTAG
* *
102290 AAATAAAACCGGGGTTGGAGTATCCCCT-TAGAAATAACGGGGTTGGAGTAT-CCCGATTGTGAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGA-AAATAACGGGGTTGGAGTATCCCCGATTATGAA
102353 AAATTAATATTTTAG
65 AAATTAATATTTTAG
* *
102368 AAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
102433 AATTAATATTTTAG
66 AATTAATATTTTAG
*
102447 AAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
1 AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
* *
102512 AATTGATGTTTTAG
66 AATTAATATTTTAG
* *
102526 AGATAAAACCGGGGTTAGAGTATCCCC
1 AAATAAAACCGGGGTTGGAGTATCCCC
102553 GATTATGAAA
Statistics
Matches: 391, Mismatches: 27, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
78 71 0.18
79 320 0.82
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (79 bp):
AAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAA
AATTAATATTTTAG
Found at i:102467 original size:236 final size:237
Alignment explanation
Indices: 102053--102552 Score: 876
Period size: 236 Copynumber: 2.1 Consensus size: 237
102043 TGTTCTAAAA
* * *
102053 AAATAAAATCGGGGTTAGAGTATTCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
1 AAATAAAACCGGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
*
102118 AACTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTAT
66 AACTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTAT
* * *
102183 CCCCGATTATGAAAAAATGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAAAATAA
131 CCCCGATTATGAAAAAATAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAA
102248 CAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
196 CAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
* *
102290 AAATAAAACCGGGGTTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTAT-CCCGATTGTGAAA
1 AAATAAAACCGGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
*
102354 AATTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTAT
66 AACTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTAT
*
102419 CCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAA
131 CCCCGATTATGAAAAAATAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAA
*
102484 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
196 CAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
*
102526 AGATAAAACCGGGGTTAGAGTATCCCC
1 AAATAAAACCGGGGTTAGAGTATCCCC
102553 GATTATGAAA
Statistics
Matches: 249, Mismatches: 14, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
236 203 0.82
237 46 0.18
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (237 bp):
AAATAAAACCGGGGTTAGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAA
AACTAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTAGAGTAT
CCCCGATTATGAAAAAATAATATTTTAGAAATAAAACCGAGGTTGGAGTATCCCCTCGAAAATAA
CAGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAG
Found at i:102554 original size:130 final size:130
Alignment explanation
Indices: 102405--102663 Score: 455
Period size: 130 Copynumber: 2.0 Consensus size: 130
102395 TCGAAAATAA
102405 CGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
*
102470 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
66 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAC
* * *
102535 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGAGGTTGGAGTAT
1 CGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
* * *
102600 CCCCTTGAAAATAACGGGTTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAA
66 CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAA
102664 TTAGGGTTGA
Statistics
Matches: 122, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
130 122 1.00
ACGTcount: A:0.35, C:0.13, G:0.23, T:0.29
Consensus pattern (130 bp):
CGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
CCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAAC
Found at i:102560 original size:51 final size:51
Alignment explanation
Indices: 102484--102603 Score: 222
Period size: 51 Copynumber: 2.4 Consensus size: 51
102474 TCGAAAATAA
102484 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
*
102535 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
*
102586 CGAGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
102604 TTGAAAATAA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAAC
Found at i:102601 original size:209 final size:209
Alignment explanation
Indices: 102327--102761 Score: 712
Period size: 209 Copynumber: 2.1 Consensus size: 209
102317 TTAGAAATAA
*
102327 CGGGGTTGGAGTAT-CCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
102391 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
66 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAA-
*
102456 CGA-GGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATG
130 CGAGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATG
102520 TTTTAGAGATAAAAC
195 TTTTAGAGATAAAAC
* * * *
102535 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
* * * ** * *
102600 CCCCTTGAAAATAACGGGTTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAAT
66 CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
* *
102665 TAGGGTTGAAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
131 GAGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
102730 TTTAGAGATAAAAC
196 TTTAGAGATAAAAC
102744 CGGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
102762 TCGAAAATAA
Statistics
Matches: 209, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
208 14 0.07
209 195 0.93
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (209 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGAGGTTGGAGTAT
CCCCTCGAAAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAAC
GAGGGTTGAAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGT
TTTAGAGATAAAAC
Found at i:102626 original size:79 final size:79
Alignment explanation
Indices: 102535--103081 Score: 860
Period size: 79 Copynumber: 6.9 Consensus size: 79
102525 GAGATAAAAC
* * *
102535 CGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGAGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
102600 CCCCTTGAAAATAA
66 CCCCTCGAAAATAA
* * *** *
102614 CGGGTTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAATTAGGGTTGAAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
102679 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
*
102693 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
102758 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
*
102772 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACTGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
102837 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
* * * *
102851 CGGAGTTGGAGTATCCCCAATTATGAAAAATTGGTGTTTTAGAAATAAAACCAGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
*
102916 CCCCTCGGAAATAA
66 CCCCTCGAAAATAA
* * ** * *
102930 CGGGGTTGGAGTATCCCCGACTGTGAAAAATAAATATTTTAGAAATAAAACCGGGGTTAGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
102995 CCCCTCGAAAATAA
66 CCCCTCGAAAATAA
*
103009 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAGATAAAACCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
103074 CCCCTCGA
66 CCCCTCGA
103082 TTAAAGGAAA
Statistics
Matches: 423, Mismatches: 45, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
79 423 1.00
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTAT
CCCCTCGAAAATAA
Found at i:103101 original size:53 final size:51
Alignment explanation
Indices: 103009--103135 Score: 154
Period size: 53 Copynumber: 2.5 Consensus size: 51
102999 TCGAAAATAA
*
103009 CGGGGTTGGAGTAT-CCCCGATTATGAAAAATTGATGTTTT-AGAGATAAAAC
1 CGGGGTTGGAGTATCCCCCGATTA-GAAAAATTGATGTTTTGA-AAATAAAAC
* *
103060 CGGGGTTGGAGTATCCCCTCGATTA-AAGGAAATTGGTGTTTTGAAAATAAAAT
1 CGGGGTTGGAGTATCCCC-CGATTAGAA--AAATTGATGTTTTGAAAATAAAAC
103113 CGGGGTTGGAGTAT-CCCCGATTA
1 CGGGGTTGGAGTATCCCCCGATTA
103136 TGAGCAGTTG
Statistics
Matches: 68, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
51 22 0.32
52 6 0.09
53 39 0.57
54 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.28, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCCGATTAGAAAAATTGATGTTTTGAAAATAAAAC
Found at i:104082 original size:18 final size:18
Alignment explanation
Indices: 104059--104128 Score: 54
Period size: 18 Copynumber: 3.8 Consensus size: 18
104049 ATTGCTACCT
*
104059 GCTGGAGTTGCTGCTCTC
1 GCTGGAGCTGCTGCTCTC
*
104077 GCTGGAGCTGCTGTTGCGT-
1 GCTGGAGCTGCTGCT-C-TC
* *
104096 GCTGGAGCTGCAG-TCAC
1 GCTGGAGCTGCTGCTCTC
*
104113 TGCTGGAGTTGCTGCT
1 -GCTGGAGCTGCTGCT
104129 GCTGTTGCGT
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 1 0.02
18 25 0.61
19 14 0.34
20 1 0.02
ACGTcount: A:0.09, C:0.24, G:0.37, T:0.30
Consensus pattern (18 bp):
GCTGGAGCTGCTGCTCTC
Found at i:104130 original size:43 final size:43
Alignment explanation
Indices: 104083--104184 Score: 186
Period size: 43 Copynumber: 2.4 Consensus size: 43
104073 TCTCGCTGGA
104083 GCTGCTGTTGCGTGCTGGAGCTGCAGTCACTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCACTGCTGGAGTTGCT
**
104126 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTGGAGCTGCAGTCACTGCTGGAGTTGCT
104169 GCTGCTGTTGCGTGCT
1 GCTGCTGTTGCGTGCT
104185 AGAACTGTTG
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.07, C:0.23, G:0.38, T:0.32
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTGGAGCTGCAGTCACTGCTGGAGTTGCT
Found at i:104221 original size:46 final size:43
Alignment explanation
Indices: 104083--104218 Score: 141
Period size: 43 Copynumber: 3.2 Consensus size: 43
104073 TCTCGCTGGA
* *
104083 GCTGCTGTTGCGTGCTGGAGCTGCAGTCAC-T-GCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTAGAACTGCAG-C-CGTCGCTGGAGTTGCT
* * * *
104126 GCTGCTGTTGCGTGCTGGAGCTGCAGTCGTTGCTGGAGTTGCT
1 GCTGCTGTTGCGTGCTAGAACTGCAGCCGTCGCTGGAGTTGCT
** * * *
104169 GCTGCTGTTGCGTGCTAGAACTGTTGCCGTCGTTGGAGCTGGT
1 GCTGCTGTTGCGTGCTAGAACTGCAGCCGTCGCTGGAGTTGCT
104212 GCTGCTG
1 GCTGCTG
104219 CTGGAGCTGC
Statistics
Matches: 81, Mismatches: 10, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 1 0.01
43 79 0.98
ACGTcount: A:0.08, C:0.22, G:0.38, T:0.32
Consensus pattern (43 bp):
GCTGCTGTTGCGTGCTAGAACTGCAGCCGTCGCTGGAGTTGCT
Found at i:104586 original size:26 final size:26
Alignment explanation
Indices: 104552--104694 Score: 252
Period size: 26 Copynumber: 5.5 Consensus size: 26
104542 AATTTTTATG
*
104552 CTTTCCCATGCTGCAATTTT-TATTTG
1 CTTTCCCATGCTGC-ATTTTCTATTTC
104578 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
*
104604 CTTTCCCATGCTGCATTTTTTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
104630 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
104656 CTTTCCCATGCTGCATTTTCTATTTC
1 CTTTCCCATGCTGCATTTTCTATTTC
104682 CTTTCCCATGCTG
1 CTTTCCCATGCTG
104695 TAAGTTTTCA
Statistics
Matches: 113, Mismatches: 3, Indels: 2
0.96 0.03 0.02
Matches are distributed among these distances:
25 5 0.04
26 108 0.96
ACGTcount: A:0.12, C:0.29, G:0.09, T:0.50
Consensus pattern (26 bp):
CTTTCCCATGCTGCATTTTCTATTTC
Found at i:104859 original size:6 final size:6
Alignment explanation
Indices: 104825--104851 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
104815 ATTATTATTT
104825 TTTGAA TTTGAA TTTGAA TTTGAA TTT
1 TTTGAA TTTGAA TTTGAA TTTGAA TTT
104852 TTAATTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.15, T:0.56
Consensus pattern (6 bp):
TTTGAA
Found at i:105734 original size:133 final size:133
Alignment explanation
Indices: 105496--105759 Score: 501
Period size: 133 Copynumber: 2.0 Consensus size: 133
105486 CCTGATAAAA
*
105496 TCTCTATCATATAAGCTTTATTGTTAGAAGAAGAGATCATAGCAGAAATAACATTAAAACTTAAA
1 TCTCTATCATATAAGCTTTATTATTAGAAGAAGAGATCATAGCAGAAATAACATTAAAACTTAAA
*
105561 GTAAAAAAGTAATGAATGTTAGTAATTGTAGCACAATTATAAGCATTTTGGTTTGAGTAATCAAA
66 GTAAAAAAGTAATGAATGTTAGTAATTGTAGCACAATTATAAGCATTTTGGTTTGAGTAACCAAA
105626 AGG
131 AGG
*
105629 TCTCTATCATATAAGCTTTATTATTAGAAGAAGGGATCATAGCAGAAATAACATTAAAACTTAAA
1 TCTCTATCATATAAGCTTTATTATTAGAAGAAGAGATCATAGCAGAAATAACATTAAAACTTAAA
105694 GTAAAAAAGTAATGAATGTTAGTAATTGTAGCACAATTATAAGCATTTTGGTTTGAGTAACCAAA
66 GTAAAAAAGTAATGAATGTTAGTAATTGTAGCACAATTATAAGCATTTTGGTTTGAGTAACCAAA
105759 A
131 A
105760 AATACATAAG
Statistics
Matches: 128, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
133 128 1.00
ACGTcount: A:0.43, C:0.09, G:0.16, T:0.31
Consensus pattern (133 bp):
TCTCTATCATATAAGCTTTATTATTAGAAGAAGAGATCATAGCAGAAATAACATTAAAACTTAAA
GTAAAAAAGTAATGAATGTTAGTAATTGTAGCACAATTATAAGCATTTTGGTTTGAGTAACCAAA
AGG
Found at i:107930 original size:33 final size:33
Alignment explanation
Indices: 107866--107930 Score: 78
Period size: 33 Copynumber: 2.0 Consensus size: 33
107856 TTTGAAGCAA
* * **
107866 TGTATCGATACAATTCATCATGTATTGATACAT
1 TGTATCGATACAATTCACCATATATCAATACAT
107899 TGTATCGATACAATGT-ACCATATATCAATACA
1 TGTATCGATACAAT-TCACCATATATCAATACA
107931 AATAGTAGTA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
33 26 0.96
34 1 0.04
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.35
Consensus pattern (33 bp):
TGTATCGATACAATTCACCATATATCAATACAT
Found at i:107987 original size:20 final size:19
Alignment explanation
Indices: 107960--108032 Score: 76
Period size: 20 Copynumber: 3.7 Consensus size: 19
107950 CTGCCAGTTT
**
107960 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAA
*
107980 CGTGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
107999 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-A-A
108020 -ATGTATCGATACA
1 CATGTATCGATACA
108033 TCTGGGTGTG
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
19 17 0.37
20 28 0.61
21 1 0.02
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:108937 original size:24 final size:24
Alignment explanation
Indices: 108910--108958 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
108900 ACTAAGTTAT
*
108910 GGCATTGATTGGAATAACATTAGA
1 GGCACTGATTGGAATAACATTAGA
108934 GGCACTGATTGGAATAACATTAGA
1 GGCACTGATTGGAATAACATTAGA
108958 G
1 G
108959 ATTGAGGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.10, G:0.27, T:0.27
Consensus pattern (24 bp):
GGCACTGATTGGAATAACATTAGA
Found at i:109220 original size:42 final size:41
Alignment explanation
Indices: 109172--109252 Score: 99
Period size: 42 Copynumber: 2.0 Consensus size: 41
109162 CTAAATCTTG
*
109172 TCACTTTATAAAACTTAATACTAATCTTAAGTTTATATTTCA
1 TCACTTTACAAAACTTAATACTAAT-TTAAGTTTATATTTCA
* ** * *
109214 TCACTTTACAAAGCTTTCTTCTAATTTAATTTTATATTT
1 TCACTTTACAAAACTTAATACTAATTTAAGTTTATATTT
109253 AAAGAGTTAC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
41 13 0.39
42 20 0.61
ACGTcount: A:0.33, C:0.15, G:0.02, T:0.49
Consensus pattern (41 bp):
TCACTTTACAAAACTTAATACTAATTTAAGTTTATATTTCA
Found at i:119429 original size:49 final size:49
Alignment explanation
Indices: 119374--120032 Score: 938
Period size: 49 Copynumber: 13.5 Consensus size: 49
119364 TACCTGGGTC
* *
119374 AGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
* * * * *
119423 AGCTGGCCTTGACTCAGCACATTGGCCCCTTCACCATTAAGTCCAATAT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
119472 AGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCCAATGT
* * * *
119524 AGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATAT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
* * * *
119573 AGCTAGCCTTGAATCAGCATATTGGCACCTTTATTTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
* * *
119622 AGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
* * * *
119671 CGCTGGCCTTGAATCAGCATATTGGCATCATCATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
119720 AGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
119769 AGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
119817 AGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
119866 AGCTGGCCTTGAATCAGCACATTGGCACC-TCACCTTTAAGTCCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
*
119914 AGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATAT
1 AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
* * *
119957 AGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGT
1 AGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCCAATGT
120009 AGCTGGCCTTGAATCAGCACATTG
1 AGCTGGCCTTGAATCAGCACATTG
120033 ACATCCTTTT
Statistics
Matches: 541, Mismatches: 56, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
43 39 0.07
45 1 0.00
48 92 0.17
49 327 0.60
50 3 0.01
51 2 0.00
52 77 0.14
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.31
Consensus pattern (49 bp):
AGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGT
Found at i:119960 original size:43 final size:43
Alignment explanation
Indices: 119851--119988 Score: 204
Period size: 43 Copynumber: 3.1 Consensus size: 43
119841 GCACCTTCAT
119851 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG-----CAC
119899 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
* * *
119942 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCAC
1 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
119985 CTTT
1 CTTT
119989 TCCATCTTTA
Statistics
Matches: 87, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
43 47 0.54
48 40 0.46
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (43 bp):
CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:120072 original size:56 final size:52
Alignment explanation
Indices: 119942--120080 Score: 161
Period size: 52 Copynumber: 2.6 Consensus size: 52
119932 ACATTGGCAC
* *
119942 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
* * *
119994 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACA-CC-TTTTC--CAT
* * * *
120050 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
120081 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
52 37 0.51
53 2 0.03
54 5 0.07
56 28 0.39
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATCGACACCTTTTCCAT
Found at i:120948 original size:33 final size:33
Alignment explanation
Indices: 120911--120977 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
120901 TTCAACGATC
120911 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
120944 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
120977 T
1 T
120978 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:120949 original size:13 final size:13
Alignment explanation
Indices: 120931--120955 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
120921 CATAAAATGT
120931 TGTATCGATACAA
1 TGTATCGATACAA
120944 TGTATCGATACA
1 TGTATCGATACA
120956 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:121083 original size:52 final size:50
Alignment explanation
Indices: 121020--121160 Score: 192
Period size: 52 Copynumber: 2.7 Consensus size: 50
121010 TATTACTCAC
*
121020 ATGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
* * *
121072 ATGTATCGATACATTATAAAATGTATCGATACATGCAGGCAAGTTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
121124 ATGTATCGATACACTATTAAATGTATCGATACATGCA
1 ATGTATCGATACACTATT--ATGTATCGATACATGCA
121161 AATAAATTTT
Statistics
Matches: 79, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
51 2 0.03
52 77 0.97
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:128457 original size:12 final size:11
Alignment explanation
Indices: 128438--128470 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
128428 CCTAATCTTC
128438 ACAAAAAAAAA
1 ACAAAAAAAAA
128449 ACAAAAAAAAA
1 ACAAAAAAAAA
128460 ACAAAAAAAAA
1 ACAAAAAAAAA
128471 GGGAAAAACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:129454 original size:32 final size:31
Alignment explanation
Indices: 129418--129508 Score: 141
Period size: 30 Copynumber: 2.9 Consensus size: 31
129408 CAAATACCTT
129418 TTTAAAGTCCACGACTCAGTGGCATCTTTTCC
1 TTTAAAGTCCACGACTCAGTGGCAT-TTTTCC
129450 TTTAAAGTCCACGACTCAGTGGCATTTTGT-C
1 TTTAAAGTCCACGACTCAGTGGCATTTT-TCC
*
129481 -TCAAAGTCCACGACTCAGTGGCATTTTT
1 TTTAAAGTCCACGACTCAGTGGCATTTTT
129509 TCGTCAAAGC
Statistics
Matches: 57, Mismatches: 1, Indels: 5
0.90 0.02 0.08
Matches are distributed among these distances:
29 1 0.02
30 26 0.46
31 4 0.07
32 26 0.46
ACGTcount: A:0.23, C:0.25, G:0.18, T:0.34
Consensus pattern (31 bp):
TTTAAAGTCCACGACTCAGTGGCATTTTTCC
Found at i:129489 original size:30 final size:30
Alignment explanation
Indices: 129421--129534 Score: 140
Period size: 31 Copynumber: 3.7 Consensus size: 30
129411 ATACCTTTTT
* *
129421 AAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCAT-TTTT-CGTC
129453 AAAGTCCACGACTCAGTGGCATTTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATTTT-TCGTC
129483 AAAGTCCACGACTCAGTGGCATTTTTTCGTC
1 AAAGTCCACGACTCAGTGGCA-TTTTTCGTC
* * *
129514 AAAGCCCACAACTCCGTGGCA
1 AAAGTCCACGACTCAGTGGCA
129535 CCTTCTTTTT
Statistics
Matches: 75, Mismatches: 4, Indels: 7
0.87 0.05 0.08
Matches are distributed among these distances:
30 24 0.32
31 28 0.37
32 23 0.31
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.28
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATTTTTCGTC
Found at i:129656 original size:70 final size:68
Alignment explanation
Indices: 129514--129942 Score: 468
Period size: 70 Copynumber: 6.3 Consensus size: 68
129504 TTTTTTCGTC
* * *
129514 AAAGCCCACAACTCCGTGGCA-CCTTCTTTTTTTAAAAGCCCACAACTCCGTGGCACCTTCTTCT
1 AAAGCCCACAACTCCGTGGCACCCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
129578 TTT
66 TTT
* * * *
129581 CAAAGCCCACAACTTCGTGGCACCCTTTCTTCTTTTCAAAGCCCATAATTCTGTGGCACCTTTTT
1 -AAAGCCCACAACTCCGTGGCACCC-TTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
129646 CTGTTT
64 CT-TTT
* *
129652 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
1 AAAGCCCACAACTCCGTGGCACCCTTCTT--CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
129717 CTTTT
64 CTTTT
* * * *
129722 AAAGCCCACAACTCCGTGGCA--C-TC-CCTTTT--AAGTCCACAACTCCGTGGCATCTTTCTCC
1 AAAGCCCACAACTCCGTGGCACCCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTT-T-T
*
129781 CTTCCT
64 CTT-TT
* * * * *
129787 AAATCCCACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCA-C--TCT
1 AAA-GCC-CACAACTCCGTGGCACCCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
129849 -TTTT
64 CTTTT
* * * *
129853 AAAGCCCACAACTCCGTGGCACTCTTTTTC-CTTCTAAGCCCACAACTCCGTGGCACCTTTTTCT
1 AAAGCCCACAACTCCGTGGCACCCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
129917 TTT
66 TTT
*
129920 AAAGCCCACAACTCTGTGGCACC
1 AAAGCCCACAACTCCGTGGCACC
129943 TACGACTTTG
Statistics
Matches: 303, Mismatches: 38, Indels: 41
0.79 0.10 0.11
Matches are distributed among these distances:
62 23 0.08
63 24 0.08
64 28 0.09
65 6 0.02
66 8 0.03
67 41 0.14
68 21 0.07
69 7 0.02
70 84 0.28
71 41 0.14
72 1 0.00
73 19 0.06
ACGTcount: A:0.21, C:0.35, G:0.13, T:0.31
Consensus pattern (68 bp):
AAAGCCCACAACTCCGTGGCACCCTTCTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
TTT
Found at i:129656 original size:104 final size:101
Alignment explanation
Indices: 129512--130105 Score: 506
Period size: 104 Copynumber: 6.0 Consensus size: 101
129502 CATTTTTTCG
*
129512 TCAAAGCCCACAACTCCGTGGCACCTTCTTTTTTTAAAAGCCCACAACTCCGTGGCAC-CTTCTT
1 TCAAAGCCCACAACTCCGTGGCACCTT-TTCTTTT-AAAGCCCACAACTCCGTGGCACTCTTCTT
*
129576 CTTTTCAAAGCCCACAACTTCGTGGCACCCTTTCTTCTTT
64 CTTTTCAAAGCCCACAACTCCGTGGCA-CCTTT-TTCTTT
* * * *
129616 TCAAAGCCCATAATTCTGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACC-TTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTCTT
129681 CCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
64 --CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
** * *
129721 T-AAAGCCCACAACTCCGTGGCA-C-TCCCTTTT-AAGTCCACAACTCCGTGGCA-TCTTTCTCC
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAAGCCCACAACTCCGTGGCACTC-TTCTTC
* * * * * *
129781 CTTCCTAAATCCCACACAAGTCGGTGGCAACCTTCTTCTTT
65 TTTTC-AAA-GCC-CACAACTCCGTGGC-ACCTTTTTCTTT
* *
129822 TCAAAGCCCACAACTCCGTGGCA-C-TCT-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC-
1 TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTCTTCT
* *
129883 CTTCTAAGCCCACAACTCCGTGGCACCTTTTTCTTT
66 TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
* *** * *
129919 T-AAAGCCCACAACTCTGTGGCACCTACGACTTTGT---G---GC-ACT-C-T----CT-TTC-C
1 TCAAAGCCCACAACTCCGTGGCACCT-TTTCTTT-TAAAGCCCACAACTCCGTGGCACTCTTCTT
* *
129968 CTTTTTAAAGCCCACAACTCCATGGCACCTTTTTTCGTTT
64 CTTTTCAAAGCCCACAACTCCGTGGCACC-TTTTTC-TTT
* * *
130008 TCAAAGCCCACAACTCCGTGGCACTTTTTTTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCAC-CTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTCTT-
* * *
130073 CCTTTT--AAGTCCACAACTCTGTGGCATCTTTTT
64 -CTTTTCAAAGCCCACAACTCCGTGGCACCTTTTT
130106 TTCCTTCCCA
Statistics
Matches: 395, Mismatches: 55, Indels: 81
0.74 0.10 0.15
Matches are distributed among these distances:
86 1 0.00
87 25 0.06
88 8 0.02
89 5 0.01
90 24 0.06
91 1 0.00
92 2 0.01
93 1 0.00
94 3 0.01
95 2 0.01
96 23 0.06
97 18 0.05
98 19 0.05
99 26 0.07
100 20 0.05
101 22 0.06
102 49 0.12
103 10 0.03
104 83 0.21
105 17 0.04
106 10 0.03
107 26 0.07
ACGTcount: A:0.21, C:0.34, G:0.12, T:0.33
Consensus pattern (101 bp):
TCAAAGCCCACAACTCCGTGGCACCTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTCTTCT
TTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTT
Done.