Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold456
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 970336
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 5
Found at i:686110 original size:31 final size:33
Alignment explanation
Indices: 686074--686142 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
686064 TTGAATAATT
686074 ATATTAAATAT-AT-AAT-TTTAATAATAAATAA
1 ATATTAAATATAATAAATATTTAATAA-AAATAA
*
686105 ATATTAAATATAATAAATATTTAATAAAAATAT
1 ATATTAAATATAATAAATATTTAATAAAAATAA
686138 ATATT
1 ATATT
686143 TAATTAAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
31 11 0.32
32 2 0.06
33 13 0.38
34 8 0.24
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (33 bp):
ATATTAAATATAATAAATATTTAATAAAAATAA
Found at i:686117 original size:17 final size:17
Alignment explanation
Indices: 686090--686152 Score: 76
Period size: 16 Copynumber: 3.8 Consensus size: 17
686080 AATATATAAT
686090 TTTAATAATAAATAAATA
1 TTTAAT-ATAAATAAATA
*
686108 TTAAATAT-AATAAATA
1 TTTAATATAAATAAATA
* *
686124 TTTAATAAAAATATATA
1 TTTAATATAAATAAATA
686141 TTTAAT-TAAATA
1 TTTAATATAAATA
686153 GTATGATTTT
Statistics
Matches: 39, Mismatches: 5, Indels: 4
0.81 0.10 0.08
Matches are distributed among these distances:
16 19 0.49
17 15 0.38
18 5 0.13
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TTTAATATAAATAAATA
Found at i:686119 original size:16 final size:16
Alignment explanation
Indices: 686074--686130 Score: 57
Period size: 16 Copynumber: 3.6 Consensus size: 16
686064 TTGAATAATT
686074 ATATTAAATAT-AT-A
1 ATATTAAATATAATAA
*
686088 AT-TTTAATAATAAATAA
1 ATATTAAAT-AT-AATAA
686105 ATATTAAATATAATAA
1 ATATTAAATATAATAA
*
686121 ATATTTAATA
1 ATATTAAATA
686131 AAAATATATA
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
13 5 0.14
14 4 0.11
16 16 0.46
17 5 0.14
18 5 0.14
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATTAAATATAATAA
Found at i:692502 original size:12 final size:13
Alignment explanation
Indices: 692475--692509 Score: 54
Period size: 12 Copynumber: 2.7 Consensus size: 13
692465 ATATGTAGAC
692475 AATATTAAAAATAT
1 AATA-TAAAAATAT
692489 AATATAAAAA-AT
1 AATATAAAAATAT
692501 AATATAAAA
1 AATATAAAA
692510 TAAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.52
13 6 0.29
14 4 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AATATAAAAATAT
Found at i:692514 original size:14 final size:14
Alignment explanation
Indices: 692487--692541 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
692477 TATTAAAAAT
692487 ATAATAT-AAA-AA
1 ATAATATAAAATAA
692499 ATAATATAAAATAA
1 ATAATATAAAATAA
* * *
692513 ATATTTTAAAATTTAT
1 ATAATATAAAA--TAA
692529 ATAATATAAAATA
1 ATAATATAAAATA
692542 TTAATTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 7 0.21
13 3 0.09
14 13 0.38
16 11 0.32
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAATATAAAATAA
Found at i:692523 original size:25 final size:26
Alignment explanation
Indices: 692495--692543 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
692485 ATATAATATA
692495 AAAAATAATATAAAAT-AAATATTTT
1 AAAAATAATATAAAATAAAATATTTT
* * *
692520 AAAATTTATATAATATAAAATATT
1 AAAAATAATATAAAATAAAATATT
692544 AATTTATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
AAAAATAATATAAAATAAAATATTTT
Found at i:692534 original size:30 final size:30
Alignment explanation
Indices: 692499--692577 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 30
692489 AATATAAAAA
692499 ATAATATAAAATAAATATT-TTAAAATTTAT
1 ATAATATAAAATAAAT-TTATTAAAATTTAT
692529 ATAATATAAAATATTAATTTATTAAAATTTAT
1 ATAATATAAAATA--AATTTATTAAAATTTAT
692561 ATAA-ATAAAA-AAATTTA
1 ATAATATAAAATAAATTTA
692578 CATAACAAAT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
28 6 0.13
30 14 0.30
31 8 0.17
32 18 0.39
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (30 bp):
ATAATATAAAATAAATTTATTAAAATTTAT
Found at i:692540 original size:16 final size:16
Alignment explanation
Indices: 692519--692570 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
692509 ATAAATATTT
692519 TAAAATTTATATAATA
1 TAAAATTTATATAATA
*
692535 TAAAATATTA-AT-TTA
1 TAAAAT-TTATATAATA
692550 TTAAAATTTATATAA-A
1 -TAAAATTTATATAATA
692566 TAAAA
1 TAAAA
692571 AAATTTACAT
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
15 10 0.33
16 17 0.57
17 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
TAAAATTTATATAATA
Found at i:695334 original size:3 final size:3
Alignment explanation
Indices: 695326--695351 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
695316 CATTGTTACC
695326 GTG GTG GTG GTG GTG GTG GTG GTG GT
1 GTG GTG GTG GTG GTG GTG GTG GTG GT
695352 TATTATTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.00, G:0.65, T:0.35
Consensus pattern (3 bp):
GTG
Found at i:700181 original size:2 final size:2
Alignment explanation
Indices: 700176--700202 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
700166 ATATATATAT
700176 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
700203 ATTGCCTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:700418 original size:17 final size:17
Alignment explanation
Indices: 700380--700436 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
700370 AATATATAAT
*
700380 TTTAATAATAAAAAAATA
1 TTTAATAA-AAATAAATA
700398 -TTAA-AAATAATAAATA
1 TTTAATAAA-AATAAATA
*
700414 TTTAATAAAAATATATA
1 TTTAATAAAAATAAATA
700431 TTTAAT
1 TTTAAT
700437 TAAATAGTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
15 1 0.03
16 9 0.26
17 21 0.62
18 3 0.09
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TTTAATAAAAATAAATA
Found at i:701085 original size:38 final size:36
Alignment explanation
Indices: 701001--701091 Score: 101
Period size: 38 Copynumber: 2.4 Consensus size: 36
700991 TATTTGTTTA
*
701001 TAAATTTGAATAAATCTAAATAAAATTTAAATTTTATT
1 TAAATTT-AATAAAT-TAAATAAAATTTAAATTATATT
* * * *
701039 TTATTTTAAAAAATTAAATATAATATTAATATTATATT
1 TAAATTTAATAAATTAAATAAAAT-TTAA-ATTATATT
701077 TAAATTTAATAAATT
1 TAAATTTAATAAATT
701092 TGATCAAATC
Statistics
Matches: 43, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
36 9 0.21
37 10 0.23
38 24 0.56
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (36 bp):
TAAATTTAATAAATTAAATAAAATTTAAATTATATT
Found at i:701309 original size:27 final size:28
Alignment explanation
Indices: 701264--701332 Score: 77
Period size: 28 Copynumber: 2.4 Consensus size: 28
701254 TTTAAAATTT
* *
701264 AATTTAATTAATTAAAA-TTTTTTGATCA
1 AATTTAA-TATTTAAAATTTTTTTGAGCA
* *
701292 AATTTAATATTTATAATTTTTTTTAGCA
1 AATTTAATATTTAAAATTTTTTTGAGCA
701320 AATTTTAATATTT
1 AA-TTTAATATTT
701333 TTATACCATC
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 7 0.20
28 18 0.51
29 10 0.29
ACGTcount: A:0.39, C:0.03, G:0.03, T:0.55
Consensus pattern (28 bp):
AATTTAATATTTAAAATTTTTTTGAGCA
Found at i:706776 original size:12 final size:13
Alignment explanation
Indices: 706749--706783 Score: 54
Period size: 12 Copynumber: 2.7 Consensus size: 13
706739 ATATGTAGAC
706749 AATATTAAAAATAT
1 AATA-TAAAAATAT
706763 AATATAAAAA-AT
1 AATATAAAAATAT
706775 AATATAAAA
1 AATATAAAA
706784 TAAATATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 11 0.52
13 6 0.29
14 4 0.19
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AATATAAAAATAT
Found at i:706788 original size:14 final size:14
Alignment explanation
Indices: 706761--706815 Score: 51
Period size: 14 Copynumber: 3.9 Consensus size: 14
706751 TATTAAAAAT
706761 ATAATAT-AAA-AA
1 ATAATATAAAATAA
706773 ATAATATAAAATAA
1 ATAATATAAAATAA
* * *
706787 ATATTTTAAAATTTAT
1 ATAATATAAAA--TAA
706803 ATAATATAAAATA
1 ATAATATAAAATA
706816 TTAATTTATT
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
12 7 0.21
13 3 0.09
14 13 0.38
16 11 0.32
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATAATATAAAATAA
Found at i:706797 original size:25 final size:26
Alignment explanation
Indices: 706769--706817 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
706759 ATATAATATA
706769 AAAAATAATATAAAAT-AAATATTTT
1 AAAAATAATATAAAATAAAATATTTT
* * *
706794 AAAATTTATATAATATAAAATATT
1 AAAAATAATATAAAATAAAATATT
706818 AATTTATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 13 0.65
26 7 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (26 bp):
AAAAATAATATAAAATAAAATATTTT
Found at i:706808 original size:30 final size:31
Alignment explanation
Indices: 706773--706844 Score: 105
Period size: 32 Copynumber: 2.4 Consensus size: 31
706763 AATATAAAAA
706773 ATAATATAAAATA-AATATT-TTAAAATTTAT
1 ATAATATAAAATATAAT-TTATTAAAATTTAT
706803 ATAATATAAAATATTAATTTATTAAAATTTAT
1 ATAATATAAAATA-TAATTTATTAAAATTTAT
706835 ATAA-ATAAAA
1 ATAATATAAAA
706845 AATTTACATA
Statistics
Matches: 39, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
30 13 0.33
31 8 0.21
32 18 0.46
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (31 bp):
ATAATATAAAATATAATTTATTAAAATTTAT
Found at i:706814 original size:16 final size:16
Alignment explanation
Indices: 706793--706855 Score: 58
Period size: 16 Copynumber: 3.9 Consensus size: 16
706783 ATAAATATTT
706793 TAAAATTTATATAATA
1 TAAAATTTATATAATA
*
706809 TAAAATATTA-AT-TTA
1 TAAAAT-TTATATAATA
706824 TTAAAATTTATATAAATA
1 -TAAAATTTATAT-AATA
* *
706842 AAAAATTTACATAA
1 TAAAATTTATATAA
706856 CAAATATTTA
Statistics
Matches: 38, Mismatches: 4, Indels: 10
0.73 0.08 0.19
Matches are distributed among these distances:
15 5 0.13
16 18 0.47
17 13 0.34
18 2 0.05
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (16 bp):
TAAAATTTATATAATA
Found at i:706897 original size:22 final size:24
Alignment explanation
Indices: 706872--706921 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 24
706862 TTTAAACACA
706872 AATTAAAAATTATTTT-AT-TATT
1 AATTAAAAATTATTTTAATATATT
* * *
706894 AATTTAAATTTTTTTTAATATATT
1 AATTAAAAATTATTTTAATATATT
706918 AATT
1 AATT
706922 TTATTCATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 13 0.57
23 2 0.09
24 8 0.35
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
AATTAAAAATTATTTTAATATATT
Found at i:713127 original size:13 final size:14
Alignment explanation
Indices: 713098--713132 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
713088 AAATTTTTAA
713098 TATATTTATAAATT
1 TATATTTATAAATT
*
713112 TATATTT-TATATT
1 TATATTTATAAATT
713125 TATATTTA
1 TATATTTA
713133 AATAAATTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 12 0.63
14 7 0.37
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TATATTTATAAATT
Found at i:713562 original size:14 final size:14
Alignment explanation
Indices: 713543--713569 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
713533 TGATGATGAT
713543 GAGGAGGAGGAGAG
1 GAGGAGGAGGAGAG
713557 GAGGAGGAGGAGA
1 GAGGAGGAGGAGA
713570 ATTATAATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.63, T:0.00
Consensus pattern (14 bp):
GAGGAGGAGGAGAG
Found at i:714419 original size:3 final size:3
Alignment explanation
Indices: 714413--714447 Score: 54
Period size: 3 Copynumber: 11.7 Consensus size: 3
714403 ATGATGATCC
714413 ATT ATT ATT ATT A-T AGTT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT A-TT ATT ATT ATT ATT ATT AT
714448 CACTTGCACT
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 26 0.87
4 2 0.07
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:714676 original size:2 final size:2
Alignment explanation
Indices: 714669--714707 Score: 51
Period size: 2 Copynumber: 19.5 Consensus size: 2
714659 ACATAATGTG
* * *
714669 TA TA TA TA TA TA TA TA TA TA TA TA GA CA CA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
714708 GTGTGTGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.44
Consensus pattern (2 bp):
TA
Found at i:716053 original size:2 final size:2
Alignment explanation
Indices: 716046--716077 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
716036 TTATACACTG
716046 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
716078 CCCATCAGGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:716274 original size:2 final size:2
Alignment explanation
Indices: 716267--716298 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
716257 TTAGGAAAGA
*
716267 AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
716299 GAGAGGGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:716567 original size:2 final size:2
Alignment explanation
Indices: 716560--716594 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
716550 CCTTTTTGCC
716560 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
716595 GAAAGTAAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:717408 original size:2 final size:2
Alignment explanation
Indices: 717401--717438 Score: 51
Period size: 2 Copynumber: 19.0 Consensus size: 2
717391 TGGATAAATA
*
717401 AT AT AT AT AC AT AT AT AT AT AT AT AT CAT -T AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
717439 TTTTTAATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
1 1 0.03
2 29 0.91
3 2 0.06
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:718071 original size:21 final size:21
Alignment explanation
Indices: 718031--718095 Score: 60
Period size: 21 Copynumber: 3.0 Consensus size: 21
718021 TTTTATTTGA
**
718031 ATTATTTAATTAATTTAAATT
1 ATTATTTAATTAATAAAAATT
*
718052 ATTATTTATTTAATAAAAATTT
1 ATTATTTAATTAATAAAAA-TT
718074 ATTTAAATTTAATT-ATAAAAAT
1 A-TT--ATTTAATTAATAAAAAT
718096 AAATAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 16 0.44
22 3 0.08
23 3 0.08
24 7 0.19
25 7 0.19
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (21 bp):
ATTATTTAATTAATAAAAATT
Found at i:718333 original size:23 final size:21
Alignment explanation
Indices: 718303--718400 Score: 58
Period size: 23 Copynumber: 4.4 Consensus size: 21
718293 TAAAAAGTTA
718303 TTTTTTATTTAAATTAAATTAAT
1 TTTTTTATTT-AATTAAA-TAAT
*
718326 TTTTTTA-TTAATTCAA-AAT
1 TTTTTTATTTAATTAAATAAT
* *
718345 TTTAAATTAAATTTAA-TAAAAAAT
1 TTT---TT-TATTTAATTAAATAAT
*
718369 ATTTTTTATTTAAATCAAATTAAT
1 -TTTTTTATTT-AATTAAA-TAAT
718393 TTTTTTAT
1 TTTTTTAT
718401 AATAATTTTA
Statistics
Matches: 59, Mismatches: 6, Indels: 20
0.69 0.07 0.24
Matches are distributed among these distances:
19 6 0.10
21 10 0.17
22 8 0.14
23 22 0.37
24 10 0.17
25 3 0.05
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (21 bp):
TTTTTTATTTAATTAAATAAT
Found at i:718395 original size:21 final size:21
Alignment explanation
Indices: 718304--718396 Score: 53
Period size: 21 Copynumber: 4.2 Consensus size: 21
718294 AAAAAGTTAT
*
718304 TTTTTATTTAAATTAAATTAA
1 TTTTTATTTAAATCAAATTAA
* *
718325 TTTTTTTATTAATTCAAAATTTTAA
1 TTTTTAT-TTAAATC-AAA--TTAA
* ** * * *
718350 ATTAAATTT-AATAAAAAATAT
1 TTTTTATTTAAAT-CAAATTAA
718371 TTTTTATTTAAATCAAATTAA
1 TTTTTATTTAAATCAAATTAA
718392 TTTTT
1 TTTTT
718397 TTATAATAAT
Statistics
Matches: 49, Mismatches: 17, Indels: 12
0.63 0.22 0.15
Matches are distributed among these distances:
21 24 0.49
22 8 0.16
23 8 0.16
24 2 0.04
25 7 0.14
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTTTATTTAAATCAAATTAA
Found at i:720682 original size:9 final size:10
Alignment explanation
Indices: 720661--720686 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
720651 TGGGGTTATA
720661 TTTTACTATT
1 TTTTACTATT
720671 TTTTACTATT
1 TTTTACTATT
720681 TTTTAC
1 TTTTAC
720687 CTTAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.19, C:0.12, G:0.00, T:0.69
Consensus pattern (10 bp):
TTTTACTATT
Found at i:723586 original size:35 final size:35
Alignment explanation
Indices: 723541--723607 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
723531 AACAGAATTA
723541 AAAATAAAATTTATATTTAATATATTAACATATTT
1 AAAATAAAATTTATATTTAATATATTAACATATTT
* *
723576 AAAATAAAATTTATATTTGATGTATTAACATA
1 AAAATAAAATTTATATTTAATATATTAACATA
723608 AAAAAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (35 bp):
AAAATAAAATTTATATTTAATATATTAACATATTT
Found at i:724088 original size:24 final size:24
Alignment explanation
Indices: 724042--724088 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
724032 CAGTTGCAGT
* *
724042 TGCAGCAGCGGCAGCGGCTGCTGC
1 TGCAGCAGCGGCAGAGGCAGCTGC
* *
724066 TGCAGCAGCTGCAGATGCAGCTG
1 TGCAGCAGCGGCAGAGGCAGCTG
724089 TACTTGGACT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.38, T:0.15
Consensus pattern (24 bp):
TGCAGCAGCGGCAGAGGCAGCTGC
Found at i:728099 original size:23 final size:24
Alignment explanation
Indices: 728062--728115 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 24
728052 TTTATTTTTT
*
728062 TTAT-TATTTTTATATATTAA-AA
1 TTATATATTTTAATATATTAATAA
728084 TTATATATTTTAATATATTAATAA
1 TTATATATTTTAATATATTAATAA
728108 TT-TATATT
1 TTATATATT
728116 ATATAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 4 0.14
23 21 0.72
24 4 0.14
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TTATATATTTTAATATATTAATAA
Found at i:728132 original size:23 final size:24
Alignment explanation
Indices: 728079--728138 Score: 61
Period size: 23 Copynumber: 2.5 Consensus size: 24
728069 TTTTATATAT
* *
728079 TAAAATTATATATTTTAATATATTA
1 TAAAATT-TATATTATAATAAATTA
*
728104 -ATAATTTATATTAT-ATAAATTA
1 TAAAATTTATATTATAATAAATTA
*
728126 TAAAATTTTTATT
1 TAAAATTTATATT
728139 TATTTACAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
22 7 0.24
23 17 0.59
24 5 0.17
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (24 bp):
TAAAATTTATATTATAATAAATTA
Found at i:736171 original size:12 final size:12
Alignment explanation
Indices: 736154--736207 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
736144 AATAATTTAT
736154 TTTAAAATATTA
1 TTTAAAATATTA
736166 TTT-AAAT-TTA
1 TTTAAAATATTA
*
736176 ATTATAAATATTAA
1 TTTA-AAATATT-A
*
736190 TTTAAAATTTTA
1 TTTAAAATATTA
736202 TTTAAA
1 TTTAAA
736208 TTAATACGAT
Statistics
Matches: 35, Mismatches: 3, Indels: 8
0.76 0.07 0.17
Matches are distributed among these distances:
10 5 0.14
11 4 0.11
12 14 0.40
13 8 0.23
14 4 0.11
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
TTTAAAATATTA
Found at i:736192 original size:24 final size:23
Alignment explanation
Indices: 736147--736208 Score: 72
Period size: 23 Copynumber: 2.6 Consensus size: 23
736137 AATTTATAAT
*
736147 AATTTATTTTAAAATATTATTT-A
1 AATTTAATTT-AAATATTATTTAA
736170 AATTTAATTATAAATATTAATTTAA
1 AATTTAATT-TAAATATT-ATTTAA
*
736195 AATTTTATTTAAAT
1 AATTTAATTTAAAT
736209 TAATACGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 15 0.44
24 10 0.29
25 9 0.26
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (23 bp):
AATTTAATTTAAATATTATTTAA
Found at i:736398 original size:7 final size:7
Alignment explanation
Indices: 736386--736418 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
736376 ATAATTTGAT
736386 AAATTTA
1 AAATTTA
736393 AAATTTA
1 AAATTTA
736400 AAATTTA
1 AAATTTA
*
736407 TAA-TTA
1 AAATTTA
736413 AAATTT
1 AAATTT
736419 TTAATTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
6 5 0.22
7 18 0.78
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (7 bp):
AAATTTA
Found at i:736413 original size:13 final size:13
Alignment explanation
Indices: 736386--736424 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
736376 ATAATTTGAT
*
736386 AAATTTAAAATTTA
1 AAATTTATAA-TTA
736400 AAATTTATAATTA
1 AAATTTATAATTA
*
736413 AAATTTTTAATT
1 AAATTTATAATT
736425 TTTAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 14 0.61
14 9 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
AAATTTATAATTA
Found at i:737002 original size:2 final size:2
Alignment explanation
Indices: 736995--737022 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
736985 CCCAAAGGAA
736995 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
737023 GGATCCATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:737629 original size:32 final size:31
Alignment explanation
Indices: 737588--737650 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 31
737578 CTTCTCAACT
737588 TGCCATATATATATATATATATTAAGATATTA
1 TGCCATATATATATATATATA-TAAGATATTA
737620 TGCCATATATATATATATATATAAGATATTA
1 TGCCATATATATATATATATATAAGATATTA
737651 CGTCACGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 10 0.32
32 21 0.68
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.43
Consensus pattern (31 bp):
TGCCATATATATATATATATATAAGATATTA
Found at i:741058 original size:22 final size:20
Alignment explanation
Indices: 741017--741070 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
741007 TAAAATTTAA
741017 AATATATATTTAATTCATAT
1 AATATATATTTAATTCATAT
* *
741037 TATATATATATTATATTTATAT
1 AATATATAT-TTA-ATTCATAT
741059 AAT-TATATTTAA
1 AATATATATTTAA
741071 AATTAATATA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
19 1 0.03
20 11 0.38
21 8 0.28
22 9 0.31
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (20 bp):
AATATATATTTAATTCATAT
Found at i:741256 original size:32 final size:33
Alignment explanation
Indices: 741215--741284 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 33
741205 AAAGATGACT
* *
741215 ATATAAATATTTTAAAATTTATAT-AATATAAA
1 ATATTAATATATTAAAATTTATATAAATATAAA
*
741247 TTATTAATATATTAAAATTTATATAAATATAAA
1 ATATTAATATATTAAAATTTATATAAATATAAA
741280 ATATT
1 ATATT
741285 TTAAATACAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
32 21 0.64
33 12 0.36
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (33 bp):
ATATTAATATATTAAAATTTATATAAATATAAA
Found at i:741277 original size:20 final size:19
Alignment explanation
Indices: 741214--741281 Score: 62
Period size: 17 Copynumber: 3.9 Consensus size: 19
741204 AAAAGATGAC
*
741214 TATATAAATATTTTAAAATT
1 TATAT-AATATATTAAAATT
741234 TATAT-A-ATA-T-AAA-T
1 TATATAATATATTAAAATT
741248 TAT-TAATATATTAAAATT
1 TATATAATATATTAAAATT
741266 TATATAA-ATA-TAAAAT
1 TATATAATATATTAAAAT
741282 ATTTTAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 15
0.72 0.02 0.26
Matches are distributed among these distances:
13 1 0.02
14 5 0.12
15 6 0.15
16 2 0.05
17 11 0.27
18 8 0.20
19 3 0.07
20 5 0.12
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TATATAATATATTAAAATT
Found at i:741279 original size:17 final size:17
Alignment explanation
Indices: 741227--741281 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
741217 ATAAATATTT
741227 TAAAATTTATAT-AATA
1 TAAAATTTATATAAATA
741243 T-AAA-TTAT-TAATATA
1 TAAAATTTATATAA-ATA
741258 TTAAAATTTATATAAATA
1 -TAAAATTTATATAAATA
741276 TAAAAT
1 TAAAAT
741282 ATTTTAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 1 0.03
14 5 0.15
15 6 0.18
16 2 0.06
17 9 0.27
18 7 0.21
19 3 0.09
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAAAATTTATATAAATA
Found at i:741318 original size:19 final size:20
Alignment explanation
Indices: 741272--741320 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
741262 AATTTATATA
* *
741272 AATATAAAATATTTTAAATAC
1 AATAT-AAATATTTAAAACAC
*
741293 AAAATAAATA-TTAAAACAC
1 AATATAAATATTTAAAACAC
741312 AATATAAAT
1 AATATAAAT
741321 GTACAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 15 0.62
20 5 0.21
21 4 0.17
ACGTcount: A:0.63, C:0.06, G:0.00, T:0.31
Consensus pattern (20 bp):
AATATAAATATTTAAAACAC
Found at i:741489 original size:16 final size:16
Alignment explanation
Indices: 741470--741508 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
741460 ATTTTGATAC
741470 ATTTAT-TTTTTATTAT
1 ATTTATATTTTT-TTAT
741486 ATTTATATTTTTTTAT
1 ATTTATATTTTTTTAT
741502 A-TTATAT
1 ATTTATAT
741509 CATAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.27
16 11 0.50
17 5 0.23
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATTTATATTTTTTTAT
Found at i:741500 original size:26 final size:26
Alignment explanation
Indices: 741471--741548 Score: 72
Period size: 26 Copynumber: 3.0 Consensus size: 26
741461 TTTTGATACA
*
741471 TTTATTTTTTATTATATTTATATTTT
1 TTTATATTTTATTATATTTATATTTT
* *
741497 TTTATATTATATCATAATTTA-ATTGTT
1 TTTATATTTTATTAT-ATTTATATT-TT
* *
741524 TTT-TATTTTA-TATAATAATATTTT
1 TTTATATTTTATTATATTTATATTTT
741548 T
1 T
741549 ATTTAAAATT
Statistics
Matches: 42, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
24 6 0.14
25 5 0.12
26 21 0.50
27 10 0.24
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.68
Consensus pattern (26 bp):
TTTATATTTTATTATATTTATATTTT
Found at i:742905 original size:19 final size:20
Alignment explanation
Indices: 742883--742928 Score: 60
Period size: 19 Copynumber: 2.4 Consensus size: 20
742873 TTTATTATAA
742883 AATAAATTTTTTA-GAATTT
1 AATAAATTTTTTATGAATTT
*
742902 AATATATTTTTTATTGAATTT
1 AATAAATTTTTTA-TGAATTT
742923 AA-AAAT
1 AATAAAT
742929 ATATTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 12 0.52
20 3 0.13
21 8 0.35
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.52
Consensus pattern (20 bp):
AATAAATTTTTTATGAATTT
Found at i:743019 original size:2 final size:2
Alignment explanation
Indices: 743012--743046 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
743002 AATATTTTAC
743012 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
743047 CATACAAAAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:744381 original size:13 final size:13
Alignment explanation
Indices: 744365--744395 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
744355 AAAAATTAAC
744365 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
744378 AAAAAAAGAAAAA
1 AAAAAAAGAAAAA
*
744391 GAAAA
1 AAAAA
744396 GCTGAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (13 bp):
AAAAAAAGAAAAA
Found at i:744705 original size:16 final size:16
Alignment explanation
Indices: 744684--744740 Score: 55
Period size: 16 Copynumber: 3.5 Consensus size: 16
744674 ATAAATATTT
744684 TAAATTTTATATTATA
1 TAAATTTTATATTATA
744700 TAAATTATTA-A-TATA
1 TAAATT-TTATATTATA
* *
744715 TTAAAATTTATATAAATA
1 -TAAATTTTATAT-TATA
744733 TAAATTTT
1 TAAATTTT
744741 TTAAATATAA
Statistics
Matches: 33, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
15 7 0.21
16 13 0.39
17 10 0.30
18 3 0.09
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TAAATTTTATATTATA
Found at i:744719 original size:32 final size:33
Alignment explanation
Indices: 744677--744738 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 33
744667 ATTATAAATA
* * *
744677 AATATTTTAAATTTTATAT-TATATAAATTATT
1 AATATATTAAAATTTATATAAATATAAATTATT
744709 AATATATTAAAATTTATATAAATATAAATT
1 AATATATTAAAATTTATATAAATATAAATT
744739 TTTTAAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 17 0.65
33 9 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (33 bp):
AATATATTAAAATTTATATAAATATAAATTATT
Found at i:745077 original size:3 final size:3
Alignment explanation
Indices: 745069--745100 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
745059 ATAAGATGTA
*
745069 AAT AAT AAT AAT AAC AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
745101 AAGTAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (3 bp):
AAT
Found at i:745305 original size:18 final size:19
Alignment explanation
Indices: 745267--745305 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
745257 TAAAATAAAA
* *
745267 TAAAATATTTTTATTTTTT
1 TAAAATATTTATATTTATT
745286 TAAAAT-TTTATATTTATT
1 TAAAATATTTATATTTATT
745304 TA
1 TA
745306 TTAATGAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TAAAATATTTATATTTATT
Found at i:745480 original size:27 final size:27
Alignment explanation
Indices: 745445--745517 Score: 69
Period size: 27 Copynumber: 2.7 Consensus size: 27
745435 ATCAAATTTT
* * *
745445 ATATAAATATATAATATTTTAAATATA
1 ATATTAATATATAATAATATAAATATA
* * *
745472 AT-TGTAATAAAAAATAATATAAATATG
1 ATAT-TAATATATAATAATATAAATATA
745499 ATATTAATATATAA-AATAT
1 ATATTAATATATAATAATAT
745518 TAAGTTTATT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
26 6 0.17
27 29 0.81
28 1 0.03
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.40
Consensus pattern (27 bp):
ATATTAATATATAATAATATAAATATA
Found at i:760492 original size:2 final size:2
Alignment explanation
Indices: 760485--760520 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
760475 AAGCAGCTGG
760485 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
760521 GTGGACTCAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:762215 original size:19 final size:19
Alignment explanation
Indices: 762166--762215 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
762156 TTAAAAATAT
*
762166 TATTAAT-TA-TAAATTAA
1 TATTAATATATTATATTAA
*
762183 TA-TAATATTTTTATATTAA
1 TATTAATA-TATTATATTAA
762202 TATTAATATATTAT
1 TATTAATATATTAT
762216 TATAATAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
16 4 0.15
17 2 0.08
18 1 0.04
19 14 0.54
20 5 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (19 bp):
TATTAATATATTATATTAA
Found at i:762296 original size:48 final size:48
Alignment explanation
Indices: 762193--762296 Score: 119
Period size: 48 Copynumber: 2.2 Consensus size: 48
762183 TATAATATTT
762193 TTATA-TTAATATTAATATATTATTATAATAAAATTTAAATTAAAAAA
1 TTATATTTAATATTAATATATTATTATAATAAAATTTAAATTAAAAAA
* **
762240 -TATTTTTAATTATTTAATA-ATTATTA-AATCTAA-TTAAATTAAAAAAA
1 TTATATTTAA-TA-TTAATATATTATTATAATAAAATTTAAATT-AAAAAA
762287 TTATATTTAA
1 TTATATTTAA
762297 AATAAAATTT
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
46 10 0.21
47 15 0.31
48 17 0.35
49 6 0.12
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (48 bp):
TTATATTTAATATTAATATATTATTATAATAAAATTTAAATTAAAAAA
Found at i:762478 original size:9 final size:9
Alignment explanation
Indices: 762464--762509 Score: 65
Period size: 9 Copynumber: 5.0 Consensus size: 9
762454 TTCTATGTTG
762464 AAAAAAATA
1 AAAAAAATA
762473 AAAAAAATA
1 AAAAAAATA
762482 AAAAAAATA
1 AAAAAAATA
*
762491 ATAATAAATA
1 A-AAAAAATA
*
762501 TAAAAAATA
1 AAAAAAATA
762510 GGGGGGACAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
9 26 0.79
10 7 0.21
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (9 bp):
AAAAAAATA
Found at i:762488 original size:19 final size:19
Alignment explanation
Indices: 762464--762509 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
762454 TTCTATGTTG
762464 AAAAAAAT-AAAAAAAATA
1 AAAAAAATAAAAAAAAATA
* *
762482 AAAAAAATAATAATAAATA
1 AAAAAAATAAAAAAAAATA
*
762501 TAAAAAATA
1 AAAAAAATA
762510 GGGGGGACAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 8 0.33
19 16 0.67
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (19 bp):
AAAAAAATAAAAAAAAATA
Found at i:762493 original size:21 final size:20
Alignment explanation
Indices: 762464--762507 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
762454 TTCTATGTTG
762464 AAAAAAATAAAAAAAATAAA
1 AAAAAAATAAAAAAAATAAA
* *
762484 AAAAATAATAATAAATATAAA
1 AAAAA-AATAAAAAAAATAAA
762505 AAA
1 AAA
762508 TAGGGGGGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (20 bp):
AAAAAAATAAAAAAAATAAA
Found at i:763052 original size:16 final size:15
Alignment explanation
Indices: 763031--763060 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
763021 AAAGATGAAT
763031 TATATAATATTATTTG
1 TATATAATA-TATTTG
763047 TATATAATATATTT
1 TATATAATATATTT
763061 TTTATTTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (15 bp):
TATATAATATATTTG
Found at i:763089 original size:29 final size:30
Alignment explanation
Indices: 763042--763104 Score: 78
Period size: 29 Copynumber: 2.1 Consensus size: 30
763032 ATATAATATT
*
763042 ATTTGTATATAATATATTT-TTTATTTT-TA
1 ATTTGTATATAATAAATTTATTT-TTTTATA
763071 ATTTGTATGATAA-AAATTTATTTTTTTATA
1 ATTTGTAT-ATAATAAATTTATTTTTTTATA
763101 ATTT
1 ATTT
763105 TTTTATATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 17 0.57
30 13 0.43
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (30 bp):
ATTTGTATATAATAAATTTATTTTTTTATA
Found at i:763458 original size:17 final size:17
Alignment explanation
Indices: 763421--763463 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
763411 TTTATTTTTT
*
763421 TATTTTAAAAAAAATTTA
1 TATTTT-AAAAAAATTAA
763439 TATATTTAAAAAAA-TAA
1 TAT-TTTAAAAAAATTAA
763456 TATTTTAA
1 TATTTTAA
763464 TGACTATAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 5 0.22
17 5 0.22
18 10 0.43
19 3 0.13
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TATTTTAAAAAAATTAA
Found at i:764405 original size:23 final size:23
Alignment explanation
Indices: 764370--764522 Score: 62
Period size: 23 Copynumber: 6.2 Consensus size: 23
764360 TTATATATTC
* *
764370 ATATCATATTTTTATATTTAATT
1 ATATTATAATTTTATATTTAATT
*
764393 ATATTATAATTTTAT-TTATATTT
1 ATATTATAATTTTATATT-TAATT
* *
764416 ATA-TAAAATTTAATACATTATTAATT
1 ATATTATAATTT--TATA-T-TTAATT
*
764442 ATATTATAAGACTTTTAAATATTTATTT
1 ATATTAT-A-A-TTTT--ATATTTAATT
* *
764470 ATATCAT-ATTATTAT-TATTATTAT
1 ATATTATAATT-TTATAT-TTAAT-T
*
764494 ATATATATAATTTTTTCATTTAATT
1 ATAT-TATAATTTTAT-ATTTAATT
764519 ATAT
1 ATAT
764523 CAAACATGAT
Statistics
Matches: 98, Mismatches: 13, Indels: 36
0.67 0.09 0.24
Matches are distributed among these distances:
22 10 0.10
23 27 0.28
24 9 0.09
25 13 0.13
26 15 0.15
27 4 0.04
28 13 0.13
29 2 0.02
30 5 0.05
ACGTcount: A:0.39, C:0.03, G:0.01, T:0.57
Consensus pattern (23 bp):
ATATTATAATTTTATATTTAATT
Found at i:765730 original size:7 final size:7
Alignment explanation
Indices: 765718--765757 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
765708 TGGTACAGGG
765718 GCCCTTT
1 GCCCTTT
765725 GCCCTTT
1 GCCCTTT
765732 GCCCTTT
1 GCCCTTT
765739 GCCCTTT
1 GCCCTTT
765746 GCCCTTT
1 GCCCTTT
765753 GCCCT
1 GCCCT
765758 CTGTTTTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.00, C:0.45, G:0.15, T:0.40
Consensus pattern (7 bp):
GCCCTTT
Found at i:767259 original size:29 final size:28
Alignment explanation
Indices: 767190--767259 Score: 72
Period size: 31 Copynumber: 2.4 Consensus size: 28
767180 ATAAAATTTT
767190 TATAAATTT-AATTTAATAAAAAAATAA
1 TATAAATTTAAATTTAATAAAAAAATAA
*
767217 TATATATTTTTTAAATTTAATAATAAAAAT-A
1 TATA-A--ATTTAAATTTAATAA-AAAAATAA
767248 TATAAATATTAA
1 TATAAAT-TTAA
767260 TATAAAATAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
27 4 0.11
28 2 0.06
29 4 0.11
30 4 0.11
31 15 0.43
32 6 0.17
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (28 bp):
TATAAATTTAAATTTAATAAAAAAATAA
Found at i:767537 original size:17 final size:18
Alignment explanation
Indices: 767503--767539 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
767493 TTATTTTATT
767503 ATTTAAAATATATTAAAA
1 ATTTAAAATATATTAAAA
*
767521 ATTTAAAA-ATTTTAAAA
1 ATTTAAAATATATTAAAA
767538 AT
1 AT
767540 ATTTGATTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (18 bp):
ATTTAAAATATATTAAAA
Found at i:768344 original size:22 final size:23
Alignment explanation
Indices: 768301--768348 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 23
768291 TTATATATAA
*
768301 TAATTAAAAAAAGCTTTTAAAATAT
1 TAATTAAAAAAA-C-TTAAAAATAT
768326 TAATTAAAAAAA-TTAAAAATAT
1 TAATTAAAAAAACTTAAAAATAT
768348 T
1 T
768349 TTTATAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 10 0.45
25 12 0.55
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (23 bp):
TAATTAAAAAAACTTAAAAATAT
Found at i:770628 original size:11 final size:11
Alignment explanation
Indices: 770606--770664 Score: 52
Period size: 11 Copynumber: 5.4 Consensus size: 11
770596 AAAGAGAACT
770606 AATAATTTAAAA
1 AATAA-TTAAAA
770618 AATAATTAAAA
1 AATAATTAAAA
*
770629 TATAA-TATAAA
1 AATAATTA-AAA
*
770640 AATAATATAAAT
1 AATAAT-TAAAA
770652 AA-AA-TAAAA
1 AATAATTAAAA
770661 AATA
1 AATA
770665 TAAATATATT
Statistics
Matches: 39, Mismatches: 4, Indels: 10
0.74 0.08 0.19
Matches are distributed among these distances:
9 6 0.15
10 3 0.08
11 19 0.49
12 9 0.23
13 2 0.05
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (11 bp):
AATAATTAAAA
Found at i:770634 original size:23 final size:23
Alignment explanation
Indices: 770615--770664 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
770605 TAATAATTTA
770615 AAAAATAAT-TAAAATATAATAT
1 AAAAATAATATAAAATATAATAT
*
770637 AAAAATAATAT-AAATAAAATA-
1 AAAAATAATATAAAATATAATAT
770658 AAAAATA
1 AAAAATA
770665 TAAATATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 7 0.27
22 18 0.69
23 1 0.04
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAATAATATAAAATATAATAT
Found at i:770666 original size:18 final size:17
Alignment explanation
Indices: 770625--770670 Score: 58
Period size: 18 Copynumber: 2.7 Consensus size: 17
770615 AAAAATAATT
*
770625 AAAATAT-AATATAAAA
1 AAAATATAAATAAAAAA
*
770641 ATAATATAAATAAAATAA
1 AAAATATAAATAAAA-AA
770659 AAAATATAAATA
1 AAAATATAAATA
770671 TATTAATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 6 0.24
17 6 0.24
18 13 0.52
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAATATAAATAAAAAA
Found at i:770669 original size:27 final size:27
Alignment explanation
Indices: 770619--770670 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
770609 AATTTAAAAA
* * *
770619 ATAATTAAAATATAATATAAAAATAAT
1 ATAAATAAAATAAAAAATAAAAATAAT
*
770646 ATAAATAAAATAAAAAATATAAATA
1 ATAAATAAAATAAAAAATAAAAATA
770671 TATTAATTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (27 bp):
ATAAATAAAATAAAAAATAAAAATAAT
Found at i:779031 original size:12 final size:12
Alignment explanation
Indices: 779003--779114 Score: 54
Period size: 12 Copynumber: 9.0 Consensus size: 12
778993 GTTAAACTAA
*
779003 ATATTTAT-CTT
1 ATATTTATATTT
779014 AGTATTTATATTT
1 A-TATTTATATTT
779027 ATATTTTATTATTT
1 ATA-TTTA-TATTT
*
779041 ATATTATATAAATT
1 ATATT-TAT-ATTT
**
779055 ATA-AAATATTT
1 ATATTTATATTT
*
779066 -TATTTTTATTT
1 ATATTTATATTT
*
779077 -TATTTTTTATATT
1 ATA-TTTATAT-TT
779090 ATATATTATATTT
1 ATAT-TTATATTT
779103 A-ATTTATTATTT
1 ATATTTA-TATTT
779115 TTTATTATAA
Statistics
Matches: 80, Mismatches: 9, Indels: 23
0.71 0.08 0.21
Matches are distributed among these distances:
10 2 0.03
11 14 0.17
12 25 0.31
13 16 0.20
14 23 0.29
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (12 bp):
ATATTTATATTT
Found at i:779041 original size:7 final size:6
Alignment explanation
Indices: 779003--779114 Score: 54
Period size: 7 Copynumber: 18.0 Consensus size: 6
778993 GTTAAACTAA
* *
779003 ATATTT AT-CTT AGTATTT ATATTT ATATTTT ATTATTT ATATTAT ATAAATT
1 ATATTT ATATTT A-TATTT ATATTT ATA-TTT A-TATTT ATATT-T AT-ATTT
** * *
779055 ATA-AA ATATTT -TATTT TTATTT -TATTTT TTATATT ATATATT ATATTT
1 ATATTT ATATTT ATATTT ATATTT ATA-TTT ATAT-TT ATAT-TT ATATTT
779103 A-ATTT ATTATTT
1 ATATTT A-TATTT
779115 TTTATTATAA
Statistics
Matches: 85, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
5 18 0.21
6 28 0.33
7 35 0.41
8 4 0.05
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (6 bp):
ATATTT
Found at i:779087 original size:30 final size:31
Alignment explanation
Indices: 779053--779115 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 31
779043 ATTATATAAA
* * *
779053 TTATAAAATATTTTATTTTTATTTTATT-TT
1 TTATAAAATATATTATATTTAATTTATTATT
**
779083 TTATATTATATATTATATTTAATTTATTATT
1 TTATAAAATATATTATATTTAATTTATTATT
779114 TT
1 TT
779116 TTATTATAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
30 23 0.85
31 4 0.15
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (31 bp):
TTATAAAATATATTATATTTAATTTATTATT
Found at i:779142 original size:31 final size:31
Alignment explanation
Indices: 779080--779143 Score: 78
Period size: 31 Copynumber: 2.0 Consensus size: 31
779070 TTTATTTTAT
779080 TTTTTATATTATATATTATATTTAATTTATTA
1 TTTTTATATTATATATTATATTTAA-TTATTA
*
779112 TTTTT-TATTATAATATTCATGTTTAA-TATTA
1 TTTTTATATTAT-ATATT-ATATTTAATTATTA
779143 T
1 T
779144 ACACAAGGGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
31 12 0.41
32 10 0.34
33 7 0.24
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (31 bp):
TTTTTATATTATATATTATATTTAATTATTA
Found at i:780798 original size:15 final size:16
Alignment explanation
Indices: 780774--780807 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
780764 TATCATTATT
780774 AATATAAAATAT-ATA
1 AATATAAAATATAATA
*
780789 AATATTAAATATAATA
1 AATATAAAATATAATA
780805 AAT
1 AAT
780808 CCATAATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 11 0.65
16 6 0.35
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
AATATAAAATATAATA
Found at i:781146 original size:21 final size:21
Alignment explanation
Indices: 781122--781161 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
781112 AGGTTTTGTG
*
781122 TAAATTAAATAATTATATATA
1 TAAATGAAATAATTATATATA
*
781143 TAAATGATATAATTATATA
1 TAAATGAAATAATTATATA
781162 ATATGAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
TAAATGAAATAATTATATATA
Found at i:781171 original size:19 final size:17
Alignment explanation
Indices: 781139--781173 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
781129 AATAATTATA
781139 TATATAAATGATATAAT
1 TATATAAATGATATAAT
781156 TATATAATATGAATATAA
1 TATATAA-ATG-ATATAA
781174 AATATAACAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (17 bp):
TATATAAATGATATAAT
Found at i:781179 original size:35 final size:35
Alignment explanation
Indices: 781140--781242 Score: 104
Period size: 35 Copynumber: 2.9 Consensus size: 35
781130 ATAATTATAT
781140 ATATAAATGATA-TAATTATATAATATGAATATAAA
1 ATATAAAT-ATATTAATTATATAATATGAATATAAA
* *
781175 ATATAACATATATTAA-AATAAAATAT-AATATAAA
1 ATATAA-ATATATTAATTATATAATATGAATATAAA
*
781209 ATTAATAAATTTATTAAATTTATATAATATGAAT
1 A-T-ATAAATATATT-AA-TTATATAATATGAAT
781243 CAATTTTTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
34 9 0.16
35 24 0.44
36 11 0.20
38 8 0.15
39 3 0.05
ACGTcount: A:0.57, C:0.01, G:0.03, T:0.39
Consensus pattern (35 bp):
ATATAAATATATTAATTATATAATATGAATATAAA
Found at i:782398 original size:18 final size:19
Alignment explanation
Indices: 782360--782403 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
782350 TAACAAGTAC
782360 TATAATGTTATATTTTAACA
1 TATAAT-TTATATTTTAACA
*
782380 TATAATTTA-ATTTTCACA
1 TATAATTTATATTTTAACA
782398 T-TAATT
1 TATAATT
782404 ATTGACTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 5 0.22
18 9 0.39
19 3 0.13
20 6 0.26
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (19 bp):
TATAATTTATATTTTAACA
Found at i:782794 original size:14 final size:15
Alignment explanation
Indices: 782775--782813 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
782765 TTTTAAAAAA
*
782775 TAAATAATAT-TATT
1 TAAATAAAATGTATT
782789 TAAATAAAATGTATT
1 TAAATAAAATGTATT
782804 TAATATAAAA
1 TAA-ATAAAA
782814 AAATTATATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 7 0.32
16 6 0.27
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (15 bp):
TAAATAAAATGTATT
Found at i:782825 original size:18 final size:20
Alignment explanation
Indices: 782789--782827 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 20
782779 TAATATTATT
*
782789 TAAATAAAATGTATTTAATA
1 TAAATAAAATGTATATAATA
782809 TAAA-AAAAT-TATATAATA
1 TAAATAAAATGTATATAATA
782827 T
1 T
782828 TAATTTTTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 9 0.50
19 5 0.28
20 4 0.22
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (20 bp):
TAAATAAAATGTATATAATA
Found at i:783215 original size:10 final size:10
Alignment explanation
Indices: 783159--783220 Score: 56
Period size: 10 Copynumber: 6.3 Consensus size: 10
783149 AAGAAATCTG
783159 TAAATTAA-T
1 TAAATTAATT
*
783168 TAAATTTA-T
1 TAAATTAATT
*
783177 TAAATTAAAT
1 TAAATTAATT
**
783187 TAAATGTTGTT
1 TAAAT-TAATT
*
783198 TGAATTAATT
1 TAAATTAATT
783208 TAAATTAATT
1 TAAATTAATT
783218 TAA
1 TAA
783221 TTGATAATAA
Statistics
Matches: 42, Mismatches: 9, Indels: 3
0.78 0.17 0.06
Matches are distributed among these distances:
9 15 0.36
10 21 0.50
11 6 0.14
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.48
Consensus pattern (10 bp):
TAAATTAATT
Found at i:783325 original size:46 final size:47
Alignment explanation
Indices: 783227--783349 Score: 120
Period size: 46 Copynumber: 2.8 Consensus size: 47
783217 TTAATTGATA
*
783227 ATAAAAATAAAA-A-ATA-TTTT-TAAA--ATTTTTAAAATATATTT
1 ATAAAAATAAAATATATATTTTTATAAATTATTTTTAAAATATATTC
* *
783268 ATAAAAATAAAATTTA-ATTTTT-TATATTTATTTTTAAAA-ATATATC
1 ATAAAAATAAAATATATATTTTTATA-AATTATTTTTAAAATATAT-TC
* *
783314 ATTAAATTAAAATATATATTTTTATAAATTATTTTT
1 ATAAAAATAAAATATATATTTTTATAAATTATTTTT
783350 TATATATTAT
Statistics
Matches: 66, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
41 12 0.18
42 1 0.02
43 7 0.11
44 1 0.02
45 4 0.06
46 24 0.36
47 15 0.23
48 2 0.03
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.50
Consensus pattern (47 bp):
ATAAAAATAAAATATATATTTTTATAAATTATTTTTAAAATATATTC
Found at i:783370 original size:14 final size:13
Alignment explanation
Indices: 783324--783372 Score: 55
Period size: 14 Copynumber: 3.5 Consensus size: 13
783314 ATTAAATTAA
783324 AATATATATTTTTAT
1 AATAT-TATTTTT-T
783339 AA-ATTATTTTTT
1 AATATTATTTTTT
783351 ATATATTATTTATTT
1 A-ATATTATTT-TTT
783366 AATATTA
1 AATATTA
783373 AAATAACTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
12 2 0.06
13 8 0.26
14 15 0.48
15 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
AATATTATTTTTT
Found at i:783389 original size:18 final size:17
Alignment explanation
Indices: 783366--783409 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
783356 TTATTTATTT
783366 AATATTAAAATAACTTTA
1 AATATTAAAAT-ACTTTA
*
783384 AATATTTAAAATATTTTA
1 AATA-TTAAAATACTTTA
783402 AAT-TTAAA
1 AATATTAAA
783410 TTAAATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
18 12 0.50
19 7 0.29
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (17 bp):
AATATTAAAATACTTTA
Found at i:783621 original size:28 final size:28
Alignment explanation
Indices: 783553--783607 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
783543 TTTGTCTGTG
* *
783553 TTTATAAATATTTGATAACTTTTTTATT
1 TTTAAAAATAATTGATAACTTTTTTATT
783581 TTTAAAAATAATTGATAA-TTTTTTATT
1 TTTAAAAATAATTGATAACTTTTTTATT
783608 ATTTTAATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 9 0.36
28 16 0.64
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (28 bp):
TTTAAAAATAATTGATAACTTTTTTATT
Found at i:783639 original size:11 final size:11
Alignment explanation
Indices: 783625--783690 Score: 63
Period size: 11 Copynumber: 6.4 Consensus size: 11
783615 TTAAATTTTA
783625 ATAATTAAAAT
1 ATAATTAAAAT
783636 ATAATT---AT
1 ATAATTAAAAT
783644 ATAA-TATAAAT
1 ATAATTA-AAAT
*
783655 ATAATATATAA-
1 ATAAT-TAAAAT
783666 ATAATTAAAAT
1 ATAATTAAAAT
783677 ATAA-TAAAAT
1 ATAATTAAAAT
783687 ATAA
1 ATAA
783691 AACATAATAA
Statistics
Matches: 46, Mismatches: 2, Indels: 15
0.73 0.03 0.24
Matches are distributed among these distances:
7 1 0.02
8 6 0.13
10 14 0.30
11 21 0.46
12 2 0.04
13 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
ATAATTAAAAT
Found at i:783669 original size:22 final size:21
Alignment explanation
Indices: 783623--783682 Score: 81
Period size: 22 Copynumber: 2.9 Consensus size: 21
783613 AATTAAATTT
783623 TAATAATTAAAATATAAT-TA
1 TAATAATTAAAATATAATATA
783643 T-ATAA-TATAAATATAATATA
1 TAATAATTA-AAATATAATATA
783663 TAAATAATTAAAATATAATA
1 T-AATAATTAAAATATAATA
783683 AAATATAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.06
19 13 0.37
20 4 0.11
22 14 0.40
23 2 0.06
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (21 bp):
TAATAATTAAAATATAATATA
Found at i:784294 original size:16 final size:16
Alignment explanation
Indices: 784273--784325 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 16
784263 ATATTAGAGA
784273 TTTTAAAATTAATATT
1 TTTTAAAATTAATATT
784289 TTTT--AA-T--TA-T
1 TTTTAAAATTAATATT
*
784299 TTTTAAAGTTAATATT
1 TTTTAAAATTAATATT
784315 TTTTAAAATTA
1 TTTTAAAATTA
784326 GATTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 12
0.67 0.05 0.28
Matches are distributed among these distances:
10 5 0.17
11 2 0.07
12 1 0.03
13 2 0.07
14 2 0.07
15 2 0.07
16 15 0.52
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (16 bp):
TTTTAAAATTAATATT
Found at i:784338 original size:28 final size:26
Alignment explanation
Indices: 784277--784338 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
784267 TAGAGATTTT
** *
784277 AAAATTAATATTTTTTAATTATTTTT
1 AAAATTAATATTTTTTAATTAGATTA
*
784303 AAAGTTAATATTTTTTAAAATTAGATTA
1 AAAATTAATATTTTTT--AATTAGATTA
784331 AAAATTAA
1 AAAATTAA
784339 ATCAATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
26 15 0.52
28 14 0.48
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (26 bp):
AAAATTAATATTTTTTAATTAGATTA
Found at i:784822 original size:34 final size:35
Alignment explanation
Indices: 784778--784857 Score: 92
Period size: 35 Copynumber: 2.3 Consensus size: 35
784768 TTATTTAATA
784778 AATTAATATTT-TCAA-TAATAATTAAATAAATTTT
1 AATTAATATTTAT-AAGTAATAATTAAATAAATTTT
* * * *
784812 AATTGATATTTATAAGTATTAATTAATTAAATTTA
1 AATTAATATTTATAAGTAATAATTAAATAAATTTT
*
784847 AAATAATATTT
1 AATTAATATTT
784858 TTGTGGGTGA
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
34 12 0.32
35 26 0.68
ACGTcount: A:0.49, C:0.01, G:0.03, T:0.47
Consensus pattern (35 bp):
AATTAATATTTATAAGTAATAATTAAATAAATTTT
Found at i:785872 original size:20 final size:21
Alignment explanation
Indices: 785849--785888 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
785839 TAATTTAAAA
785849 TAAATTTAATTTT-TTATATT
1 TAAATTTAATTTTATTATATT
785869 TAAATTTAATTTTATTATAT
1 TAAATTTAATTTTATTATAT
785889 AATATTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
TAAATTTAATTTTATTATATT
Found at i:785952 original size:17 final size:17
Alignment explanation
Indices: 785930--785981 Score: 65
Period size: 15 Copynumber: 3.1 Consensus size: 17
785920 TATAAACAAT
785930 AATTAATTATTTTTAAA
1 AATTAATTATTTTTAAA
785947 AATTAA-T-TTTTT-AA
1 AATTAATTATTTTTAAA
785961 AATATAATATATTTTTAAA
1 AAT-TAAT-TATTTTTAAA
785980 AA
1 AA
785982 AATTATATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
14 5 0.17
15 8 0.27
16 1 0.03
17 7 0.23
18 5 0.17
19 4 0.13
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
AATTAATTATTTTTAAA
Found at i:785989 original size:19 final size:18
Alignment explanation
Indices: 785937--785990 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
785927 AATAATTAAT
785937 TATTTTT-AAAAATTA-A
1 TATTTTTAAAAAATTATA
* *
785953 T-TTTTTAAAATATAATA
1 TATTTTTAAAAAATTATA
785970 TATTTTTAAAAAAATTATA
1 TATTTTT-AAAAAATTATA
785989 TA
1 TA
785991 ATTAATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
15 5 0.17
16 7 0.23
17 2 0.07
18 5 0.17
19 11 0.37
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (18 bp):
TATTTTTAAAAAATTATA
Found at i:786421 original size:33 final size:32
Alignment explanation
Indices: 786362--786427 Score: 91
Period size: 32 Copynumber: 2.0 Consensus size: 32
786352 ATTATATATA
786362 TAATAATTAAAATATTTTTAATAT-AAATTAT
1 TAATAATTAAAATATTTTTAATATAAAATTAT
786393 TAATATATTAAAAT-TTATATTAATATAAAATTAT
1 TAATA-ATTAAAATATT-T-TTAATATAAAATTAT
786427 T
1 T
786428 TTAAATATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
31 7 0.23
32 9 0.29
33 7 0.23
34 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (32 bp):
TAATAATTAAAATATTTTTAATATAAAATTAT
Found at i:786448 original size:16 final size:15
Alignment explanation
Indices: 786340--786453 Score: 68
Period size: 16 Copynumber: 7.9 Consensus size: 15
786330 TTGACTCCGA
786340 ATATTAAATATAATT
1 ATATTAAATATAATT
786355 ATA-T--ATATAA-T
1 ATATTAAATATAATT
*
786366 A-ATTAAA-ATATTT
1 ATATTAAATATAATT
*
786379 TTAATATAAATTATTAA-T
1 AT-AT-TAAA-TA-TAATT
786397 ATATTAAA-AT--TT
1 ATATTAAATATAATT
*
786409 ATATTAATATAAAATT
1 ATATTAA-ATATAATT
*
786425 ATTTTAAATATAATT
1 ATATTAAATATAATT
786440 ATATATAAATATAA
1 ATAT-TAAATATAA
786454 AAATTATGAG
Statistics
Matches: 75, Mismatches: 8, Indels: 31
0.66 0.07 0.27
Matches are distributed among these distances:
10 1 0.01
11 3 0.04
12 17 0.23
13 4 0.05
14 3 0.04
15 15 0.20
16 25 0.33
17 2 0.03
18 3 0.04
19 2 0.03
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (15 bp):
ATATTAAATATAATT
Found at i:786455 original size:50 final size:48
Alignment explanation
Indices: 786360--786460 Score: 116
Period size: 50 Copynumber: 2.1 Consensus size: 48
786350 TAATTATATA
* * *
786360 TATAATAATTAAAATATTTTTAATATAAATTATTAATATATTAAAATT
1 TATAATAATTAAAATATTTTAAATATAAATTATTAAAATATTAAAAAT
*
786408 TATATTAATATAAAATTATTTTAAATAT-AATTATATATAAATA-TAAAAAT
1 TATAATAAT-TAAAA-TATTTTAAATATAAATTAT-TA-AAATATTAAAAAT
786458 TAT
1 TAT
786461 GAGATTTAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
48 8 0.18
49 11 0.24
50 22 0.49
51 4 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (48 bp):
TATAATAATTAAAATATTTTAAATATAAATTATTAAAATATTAAAAAT
Found at i:786572 original size:3 final size:3
Alignment explanation
Indices: 786564--786595 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
786554 CTTTAATTCT
786564 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
786596 TACTCGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:786975 original size:22 final size:24
Alignment explanation
Indices: 786947--786995 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
786937 ATTTGAATAT
*
786947 AATATTT-TGATATTTAAA-TAAA
1 AATATTTAGGATATTTAAACTAAA
786969 AATATTTACGGATATTTAAACTAAA
1 AATATTTA-GGATATTTAAACTAAA
786994 AA
1 AA
786996 ACTCCAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 7 0.30
24 10 0.43
25 6 0.26
ACGTcount: A:0.51, C:0.04, G:0.06, T:0.39
Consensus pattern (24 bp):
AATATTTAGGATATTTAAACTAAA
Found at i:788590 original size:24 final size:23
Alignment explanation
Indices: 788544--788610 Score: 61
Period size: 24 Copynumber: 3.0 Consensus size: 23
788534 ATTTTATGAT
788544 ATAAATATG-AA-AATA-ATGTA
1 ATAAATATGTAATAATATATGTA
*
788564 ATAAATATGTAATAATATATTTAA
1 ATAAATATGTAATAATATATGT-A
* *
788588 ATATGATATGT-TTAATATATGTA
1 ATA-AATATGTAATAATATATGTA
788611 TTATATTTAT
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
20 9 0.24
21 2 0.05
22 4 0.11
23 4 0.11
24 13 0.34
25 6 0.16
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (23 bp):
ATAAATATGTAATAATATATGTA
Found at i:788601 original size:15 final size:16
Alignment explanation
Indices: 788578--788619 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
788568 ATATGTAATA
788578 ATATATTTAA-ATATG
1 ATATATTTAATATATG
*
788593 ATATGTTTAATATATG
1 ATATATTTAATATATG
788609 TATTATATTTA
1 -A-TATATTTA
788620 TATTTAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 9 0.41
16 5 0.23
17 1 0.05
18 7 0.32
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (16 bp):
ATATATTTAATATATG
Found at i:788622 original size:6 final size:6
Alignment explanation
Indices: 788611--788670 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
788601 AATATATGTA
* *
788611 TTATAT TTATAT TTAAAAT TT-TAAT TTAT-T TAATAAT TTATA- TTATAT
1 TTATAT TTATAT TT-ATAT TTAT-AT TTATAT TTAT-AT TTATAT TTATAT
788659 TTATAT TTATAT
1 TTATAT TTATAT
788671 AATTAATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
5 9 0.20
6 25 0.57
7 10 0.23
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (6 bp):
TTATAT
Found at i:788666 original size:17 final size:18
Alignment explanation
Indices: 788611--788670 Score: 63
Period size: 17 Copynumber: 3.3 Consensus size: 18
788601 AATATATGTA
*
788611 TTATATTTATATTTAAAAT
1 TTATA-TTATATTTAATAT
788630 TT-TAATT-TATTTAATAAT
1 TTAT-ATTATATTTAAT-AT
788648 TTATATTATATTT-ATAT
1 TTATATTATATTTAATAT
788665 TTATAT
1 TTATAT
788671 AATTAATAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
17 15 0.42
18 12 0.33
19 9 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTATATTATATTTAATAT
Found at i:792947 original size:49 final size:48
Alignment explanation
Indices: 792858--792964 Score: 171
Period size: 49 Copynumber: 2.2 Consensus size: 48
792848 AGCAGAGAAG
*
792858 GTAGAAT-ACAAGAAAAAAACATGTAGAGATTGACCCACTCCATGTAT
1 GTAGAATGACAAGAAAAAAACATGTAGAGATGGACCCACTCCATGTAT
* *
792905 GTAGAATGACAAGAAAAAACATATGTAGAGATGGACCTACTCCATGTAT
1 GTAGAATGACAAGAAAAAA-ACATGTAGAGATGGACCCACTCCATGTAT
792954 GTAGAATGACA
1 GTAGAATGACA
792965 TCTAGCTCTC
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
47 7 0.13
48 11 0.20
49 37 0.67
ACGTcount: A:0.44, C:0.15, G:0.20, T:0.21
Consensus pattern (48 bp):
GTAGAATGACAAGAAAAAAACATGTAGAGATGGACCCACTCCATGTAT
Found at i:797955 original size:2 final size:2
Alignment explanation
Indices: 797948--797977 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
797938 TCCTCTGTAA
797948 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
797978 TTAACTTCAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:803996 original size:21 final size:22
Alignment explanation
Indices: 803957--803997 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
803947 TGAATTATTA
803957 TTTAATAATATAAAATATAATT
1 TTTAATAATATAAAATATAATT
* *
803979 TTTAA-AATTTAAATTATAA
1 TTTAATAATATAAAATATAA
803998 AAATATATAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
TTTAATAATATAAAATATAATT
Found at i:804011 original size:16 final size:16
Alignment explanation
Indices: 803971--804015 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
803961 ATAATATAAA
* *
803971 ATATAATTTTTAAAAT
1 ATATAATTATAAAAAT
*
803987 TTA-AATTATAAAAAT
1 ATATAATTATAAAAAT
804002 ATATAATTATAAAA
1 ATATAATTATAAAA
804016 TAATATTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 12 0.50
16 12 0.50
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAATTATAAAAAT
Found at i:804016 original size:15 final size:15
Alignment explanation
Indices: 803961--804048 Score: 60
Period size: 14 Copynumber: 5.9 Consensus size: 15
803951 TTATTATTTA
803961 ATAA-TATAAAATAT
1 ATAATTATAAAATAT
* * *
803975 A-ATTTTTAAAATTT
1 ATAATTATAAAATAT
803989 A-AATTATAAAAATAT
1 ATAATTAT-AAAATAT
804004 ATAATTATAAAATA-
1 ATAATTATAAAATAT
*
804018 AT-ATTTTAATAATAT
1 ATAATTATAA-AATAT
*
804033 AATTAATAATAAAATA
1 -A-TAATTATAAAATA
804049 AATTTTTGAA
Statistics
Matches: 57, Mismatches: 9, Indels: 13
0.72 0.11 0.16
Matches are distributed among these distances:
13 7 0.12
14 20 0.35
15 13 0.23
16 7 0.12
17 5 0.09
18 5 0.09
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATTATAAAATAT
Found at i:804021 original size:16 final size:16
Alignment explanation
Indices: 803990--804049 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 16
803980 TTAAAATTTA
803990 AATTATAAAA-ATATAT
1 AATTATAAAATA-ATAT
804006 AATTATAAAATAATAT
1 AATTATAAAATAATAT
* *
804022 -TTTAATAATATAAT-T
1 AATT-ATAAAATAATAT
*
804037 AATAATAAAATAA
1 AATTATAAAATAA
804050 ATTTTTGAAT
Statistics
Matches: 36, Mismatches: 5, Indels: 7
0.75 0.10 0.15
Matches are distributed among these distances:
15 11 0.31
16 24 0.67
17 1 0.03
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATTATAAAATAATAT
Found at i:805229 original size:74 final size:74
Alignment explanation
Indices: 805108--805259 Score: 304
Period size: 74 Copynumber: 2.1 Consensus size: 74
805098 TATCGGACAT
805108 GAATACTCTAAGAAAAATTAAGAGTTAGAGTAATATAGCTGCAAATTTCTTCGACCACAAGCTAA
1 GAATACTCTAAGAAAAATTAAGAGTTAGAGTAATATAGCTGCAAATTTCTTCGACCACAAGCTAA
805173 AACTCAATA
66 AACTCAATA
805182 GAATACTCTAAGAAAAATTAAGAGTTAGAGTAATATAGCTGCAAATTTCTTCGACCACAAGCTAA
1 GAATACTCTAAGAAAAATTAAGAGTTAGAGTAATATAGCTGCAAATTTCTTCGACCACAAGCTAA
805247 AACTCAATA
66 AACTCAATA
805256 GAAT
1 GAAT
805260 GAAACAACAT
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
74 78 1.00
ACGTcount: A:0.45, C:0.16, G:0.14, T:0.26
Consensus pattern (74 bp):
GAATACTCTAAGAAAAATTAAGAGTTAGAGTAATATAGCTGCAAATTTCTTCGACCACAAGCTAA
AACTCAATA
Found at i:807853 original size:30 final size:30
Alignment explanation
Indices: 807791--807878 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
807781 TTTAAATTAA
* * *
807791 ATAGTGGTGCATTAGTCCTCAATTTAAAGG
1 ATAGTGGTGCACTAGTCCTTAATTTAAGGG
* * *
807821 ATAGTGATGCACTAATCCTTAATCTAAGGG
1 ATAGTGGTGCACTAGTCCTTAATTTAAGGG
*
807851 ATAGTGGTACACTAGTCCTTAATTTAAG
1 ATAGTGGTGCACTAGTCCTTAATTTAAG
807879 AGATTTAAAT
Statistics
Matches: 48, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 48 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (30 bp):
ATAGTGGTGCACTAGTCCTTAATTTAAGGG
Found at i:808026 original size:25 final size:25
Alignment explanation
Indices: 807994--808042 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
807984 AAAACTTCCT
807994 TTCTTTTCTCCTATTTTGTATTATC
1 TTCTTTTCTCCTATTTTGTATTATC
*
808019 TTCTTTTCTCCTATTTTGTGTTAT
1 TTCTTTTCTCCTATTTTGTATTAT
808043 TTTTAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.10, C:0.18, G:0.06, T:0.65
Consensus pattern (25 bp):
TTCTTTTCTCCTATTTTGTATTATC
Found at i:808134 original size:23 final size:23
Alignment explanation
Indices: 808079--808136 Score: 73
Period size: 23 Copynumber: 2.6 Consensus size: 23
808069 CATAGGTTCA
* *
808079 GAATTCTTCTGAAAAAAAATCTG
1 GAATTCTTTTTAAAAAAAATCTG
*
808102 GAATTCTTTTTAAAAAAATTCTG
1 GAATTCTTTTTAAAAAAAATCTG
*
808125 GGATT-TTTTTAA
1 GAATTCTTTTTAA
808137 TCTTTGAATC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
22 7 0.23
23 24 0.77
ACGTcount: A:0.38, C:0.09, G:0.12, T:0.41
Consensus pattern (23 bp):
GAATTCTTTTTAAAAAAAATCTG
Found at i:808247 original size:61 final size:61
Alignment explanation
Indices: 808148--808267 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 61
808138 CTTTGAATCA
** * * *
808148 GCTTTTATCGTTGATTTATTCATCCAGTCAGCTTTCATTGCTGATTGATTTAGTTAGATCT
1 GCTTTTATCACTGATTTATTCATCCAGTCAACTCTCATTGCTGATTAATTTAGTTAGATCT
*
808209 GCTTTTATCACTGATTTATTTCAAT-CAGTCAAC-CTCATTGCTGATTAATTTTGTTAGAT
1 GCTTTTATCACTGATTTA-TTC-ATCCAGTCAACTCTCATTGCTGATTAATTTAGTTAGAT
808268 AATTGGCTGC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
61 39 0.76
62 10 0.20
63 2 0.04
ACGTcount: A:0.23, C:0.17, G:0.14, T:0.47
Consensus pattern (61 bp):
GCTTTTATCACTGATTTATTCATCCAGTCAACTCTCATTGCTGATTAATTTAGTTAGATCT
Found at i:812159 original size:30 final size:29
Alignment explanation
Indices: 812125--812213 Score: 124
Period size: 30 Copynumber: 3.0 Consensus size: 29
812115 GATTTAAATT
* *
812125 AGATAGTGGTGCATTAGTCTTTAATTTACG
1 AGATAGTGGTGCACTAGTCTTTAATTTA-A
* *
812155 AGATAGTGGTGCACTAGTCCTTAATCTAA
1 AGATAGTGGTGCACTAGTCTTTAATTTAA
812184 AGGATAGTGGTGCACTAGTCTTTAATTTAA
1 A-GATAGTGGTGCACTAGTCTTTAATTTAA
812214 GGGATTTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
29 1 0.02
30 51 0.98
ACGTcount: A:0.29, C:0.12, G:0.22, T:0.36
Consensus pattern (29 bp):
AGATAGTGGTGCACTAGTCTTTAATTTAA
Found at i:812363 original size:25 final size:25
Alignment explanation
Indices: 812329--812379 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
812319 TAAAAACTTC
812329 TTTTCTTTTCTCCTATTTTGTGTTA
1 TTTTCTTTTCTCCTATTTTGTGTTA
812354 TTTTCTTTTCTCCTATTTTGTGTTA
1 TTTTCTTTTCTCCTATTTTGTGTTA
812379 T
1 T
812380 CTCTAAATTT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.08, C:0.16, G:0.08, T:0.69
Consensus pattern (25 bp):
TTTTCTTTTCTCCTATTTTGTGTTA
Done.