Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold46
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2524624
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 119418 characters in sequence are not A, C, G, or T
File 13 of 15
Found at i:2071168 original size:22 final size:21
Alignment explanation
Indices: 2071142--2071198 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 21
2071132 AAGTTAACCG
2071142 TATTATAATTATATTGTAATCA
1 TATTATAATTATATTGT-ATCA
* * **
2071164 TATTATAATCACATTGTATTT
1 TATTATAATTATATTGTATCA
2071185 TATATATAATTATA
1 TAT-TATAATTATA
2071199 GTATTATATT
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.40, C:0.05, G:0.04, T:0.51
Consensus pattern (21 bp):
TATTATAATTATATTGTATCA
Found at i:2071924 original size:15 final size:16
Alignment explanation
Indices: 2071885--2071923 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
2071875 TCAAATTTTA
2071885 ATTTTTTTAAAAAATT
1 ATTTTTTTAAAAAATT
2071901 ATTTTTTTAAAAAATT
1 ATTTTTTTAAAAAATT
2071917 ATTTTTT
1 ATTTTTT
2071924 ACGAACCAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
ATTTTTTTAAAAAATT
Found at i:2073466 original size:11 final size:11
Alignment explanation
Indices: 2073450--2073493 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
2073440 TGATACGATT
2073450 ATATGATATAA
1 ATATGATATAA
2073461 ATATGATATAA
1 ATATGATATAA
* *
2073472 AAATAAT-TAAA
1 ATATGATAT-AA
2073483 ATATGATATAA
1 ATATGATATAA
2073494 TATAAAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
10 1 0.04
11 25 0.93
12 1 0.04
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (11 bp):
ATATGATATAA
Found at i:2073513 original size:28 final size:32
Alignment explanation
Indices: 2073450--2073528 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 32
2073440 TGATACGATT
*
2073450 ATATGATATAAATATGATATAAAAATAATTAAA
1 ATATGATATAAATAT-ATATAAAAATAAGTAAA
*
2073483 ATATGATAT-AATATA-A-AAAAAT-AGTACA
1 ATATGATATAAATATATATAAAAATAAGTAAA
*
2073511 ATATGACATAAATATATA
1 ATATGATATAAATATATA
2073529 GAATTGTCAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
28 12 0.29
29 12 0.29
30 2 0.05
31 1 0.02
32 5 0.12
33 9 0.22
ACGTcount: A:0.59, C:0.03, G:0.06, T:0.32
Consensus pattern (32 bp):
ATATGATATAAATATATATAAAAATAAGTAAA
Found at i:2079739 original size:24 final size:25
Alignment explanation
Indices: 2079695--2079758 Score: 60
Period size: 24 Copynumber: 2.5 Consensus size: 25
2079685 TATCTTGTAA
* *
2079695 TTTATTATATTTTTGATACTT-ATT
1 TTTATTAAATTTGTGATACTTAATT
2079719 TTTATTAAATTTGTG-TCACTTAATT
1 TTTATTAAATTTGTGAT-ACTTAATT
2079744 TATAATATTAAATTT
1 T-T--TATTAAATTT
2079759 AAAATTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
23 1 0.03
24 17 0.52
25 4 0.12
26 1 0.03
28 10 0.30
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (25 bp):
TTTATTAAATTTGTGATACTTAATT
Found at i:2080034 original size:18 final size:18
Alignment explanation
Indices: 2080008--2080044 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
2079998 AAACATAAAG
2080008 TAATAATTTTTTAAAAAA
1 TAATAATTTTTTAAAAAA
*
2080026 TAATTATTTTTTAAAAAA
1 TAATAATTTTTTAAAAAA
2080044 T
1 T
2080045 TAAAATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TAATAATTTTTTAAAAAA
Found at i:2086586 original size:76 final size:76
Alignment explanation
Indices: 2086460--2086611 Score: 304
Period size: 76 Copynumber: 2.0 Consensus size: 76
2086450 TTGACTAAAA
2086460 CCTAGTAAATGGTATGTTGCAATTGAGTGTACAACATTTAGTACGTATCTAAAATGTTTGGTTGT
1 CCTAGTAAATGGTATGTTGCAATTGAGTGTACAACATTTAGTACGTATCTAAAATGTTTGGTTGT
2086525 TTTCAGACACC
66 TTTCAGACACC
2086536 CCTAGTAAATGGTATGTTGCAATTGAGTGTACAACATTTAGTACGTATCTAAAATGTTTGGTTGT
1 CCTAGTAAATGGTATGTTGCAATTGAGTGTACAACATTTAGTACGTATCTAAAATGTTTGGTTGT
2086601 TTTCAGACACC
66 TTTCAGACACC
2086612 TTGATCCAGT
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (76 bp):
CCTAGTAAATGGTATGTTGCAATTGAGTGTACAACATTTAGTACGTATCTAAAATGTTTGGTTGT
TTTCAGACACC
Found at i:2087515 original size:17 final size:17
Alignment explanation
Indices: 2087493--2087532 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 17
2087483 AAAGTATTAA
2087493 AATTATCTCAAATAGAG
1 AATTATCTCAAATAGAG
* *
2087510 AATTATTTTAAATAGAG
1 AATTATCTCAAATAGAG
2087527 AATTAT
1 AATTAT
2087533 TTTAATATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (17 bp):
AATTATCTCAAATAGAG
Found at i:2087533 original size:17 final size:17
Alignment explanation
Indices: 2087502--2087537 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
2087492 AAATTATCTC
2087502 AAATAGAGAATTATTTT
1 AAATAGAGAATTATTTT
2087519 AAATAGAGAATTATTTT
1 AAATAGAGAATTATTTT
2087536 AA
1 AA
2087538 TATTTGAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (17 bp):
AAATAGAGAATTATTTT
Found at i:2088620 original size:15 final size:15
Alignment explanation
Indices: 2088600--2088643 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 15
2088590 AGTAATTAAA
2088600 ATATTTAAAATATAT
1 ATATTTAAAATATAT
2088615 ATATTTAAAATA-AT
1 ATATTTAAAATATAT
* *
2088629 AAATATAAAAT-TAT
1 ATATTTAAAATATAT
2088643 A
1 A
2088644 AAATTATAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
ATATTTAAAATATAT
Found at i:2088635 original size:22 final size:22
Alignment explanation
Indices: 2088607--2088653 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
2088597 AAAATATTTA
*
2088607 AAATATATATATT-TAAAATAAT
1 AAATATA-AAATTATAAAATAAT
*
2088629 AAATATAAAATTATAAAATTAT
1 AAATATAAAATTATAAAATAAT
2088651 AAA
1 AAA
2088654 ATTATTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (22 bp):
AAATATAAAATTATAAAATAAT
Found at i:2088643 original size:8 final size:8
Alignment explanation
Indices: 2088620--2088658 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
2088610 TATATATATT
*
2088620 TAAAATAA
1 TAAAATTA
2088628 T-AAA-TA
1 TAAAATTA
2088634 TAAAATTA
1 TAAAATTA
2088642 TAAAATTA
1 TAAAATTA
2088650 TAAAATTA
1 TAAAATTA
2088658 T
1 T
2088659 TTTATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
6 2 0.07
7 6 0.21
8 20 0.71
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (8 bp):
TAAAATTA
Found at i:2088651 original size:16 final size:14
Alignment explanation
Indices: 2088605--2088658 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
2088595 TTAAAATATT
* *
2088605 TAAAATATATATATT
1 TAAAAT-TATAAATA
*
2088620 TAAAATAATAAATA
1 TAAAATTATAAATA
2088634 TAAAATTATAAAATTA
1 TAAAATTAT-AAA-TA
2088650 TAAAATTAT
1 TAAAATTAT
2088659 TTTATTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
14 13 0.39
15 9 0.27
16 11 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
TAAAATTATAAATA
Found at i:2089074 original size:21 final size:20
Alignment explanation
Indices: 2089037--2089076 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
2089027 GGTTTAATTT
* *
2089037 AAATTTAATTTTTAAATATA
1 AAATTTAATATTAAAATATA
2089057 AAATATTAATATTAAAATAT
1 AAAT-TTAATATTAAAATAT
2089077 TTTTAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
AAATTTAATATTAAAATATA
Found at i:2089471 original size:13 final size:14
Alignment explanation
Indices: 2089433--2089474 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
2089423 AAATAAAATA
2089433 AAATATTAAATTAT
1 AAATATTAAATTAT
2089447 AAATATTAAATT-T
1 AAATATTAAATTAT
* *
2089460 AATTATTTAATTAT
1 AAATATTAAATTAT
2089474 A
1 A
2089475 TCAACTTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 11 0.44
14 14 0.56
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
AAATATTAAATTAT
Found at i:2089895 original size:25 final size:25
Alignment explanation
Indices: 2089867--2089915 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
2089857 CTAATTAATA
2089867 ATTTAAAAATTAGATATTTAAAAAT
1 ATTTAAAAATTAGATATTTAAAAAT
* * **
2089892 ATTTTAATATTTTATATTTAAAAA
1 ATTTAAAAATTAGATATTTAAAAA
2089916 AATTAAATTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (25 bp):
ATTTAAAAATTAGATATTTAAAAAT
Found at i:2089933 original size:19 final size:20
Alignment explanation
Indices: 2089903--2089940 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
2089893 TTTTAATATT
2089903 TTATATTTAAAAAAATTAAA
1 TTATATTTAAAAAAATTAAA
2089923 TTATA-TTAAAAAAATTAA
1 TTATATTTAAAAAAATTAA
2089941 TAATAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TTATATTTAAAAAAATTAAA
Found at i:2090002 original size:20 final size:20
Alignment explanation
Indices: 2089977--2090015 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
2089967 TCACATATAT
*
2089977 AATAATCATTTAATATTTTA
1 AATAATCAATTAATATTTTA
2089997 AATAATCAATTAATATTTT
1 AATAATCAATTAATATTTT
2090016 TATAGTAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (20 bp):
AATAATCAATTAATATTTTA
Found at i:2090407 original size:19 final size:19
Alignment explanation
Indices: 2090367--2090413 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
2090357 TAAAATAAAA
2090367 ATTTAAATATTTAAAATAT
1 ATTTAAATATTTAAAATAT
*
2090386 ATTTTAATA-TT-AAATAT
1 ATTTAAATATTTAAAATAT
*
2090403 TTATTAAATAT
1 AT-TTAAATAT
2090414 AATAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 7 0.30
18 8 0.35
19 8 0.35
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATTTAAATATTTAAAATAT
Found at i:2091257 original size:22 final size:22
Alignment explanation
Indices: 2091229--2091304 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
2091219 TAATTAAATT
2091229 TTAAAAAATTTACATTAACAAA
1 TTAAAAAATTTACATTAACAAA
*
2091251 TTAAAAAA-TAACATTTAA-AGAA
1 TTAAAAAATTTACA-TTAACA-AA
*
2091273 TTAAAAAAATTTATCATTATTCAAA
1 TT-AAAAAATTTA-CATTA-ACAAA
2091298 -TAAAAAA
1 TTAAAAAA
2091305 CCCCTCTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 13
0.73 0.05 0.22
Matches are distributed among these distances:
21 5 0.11
22 16 0.36
23 12 0.27
24 6 0.14
25 4 0.09
26 1 0.02
ACGTcount: A:0.61, C:0.07, G:0.01, T:0.32
Consensus pattern (22 bp):
TTAAAAAATTTACATTAACAAA
Found at i:2091987 original size:22 final size:21
Alignment explanation
Indices: 2091947--2091994 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
2091937 TTATGCATGT
2091947 ATTATTATTATTTACTTATAA
1 ATTATTATTATTTACTTATAA
* *
2091968 ATTATTTTTAATTTATTTATAA
1 ATTATTATT-ATTTACTTATAA
2091990 ATTAT
1 ATTAT
2091995 ATAAATTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 8 0.33
22 16 0.67
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTATTATTATTTACTTATAA
Found at i:2092009 original size:22 final size:22
Alignment explanation
Indices: 2091947--2092006 Score: 70
Period size: 21 Copynumber: 2.8 Consensus size: 22
2091937 TTATGCATGT
* *
2091947 ATTATTAT-TATTTACTTATAA
1 ATTATTATAAATTTATTTATAA
* *
2091968 ATTATTTTTAATTTATTTATAA
1 ATTATTATAAATTTATTTATAA
2091990 ATTA-TATAAATTTATTT
1 ATTATTATAAATTTATTT
2092007 TATTAAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTATTATAAATTTATTTATAA
Found at i:2093401 original size:17 final size:18
Alignment explanation
Indices: 2093371--2093404 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2093361 ATTATATTAG
2093371 AAAAAGTAAAATAAAATA
1 AAAAAGTAAAATAAAATA
*
2093389 AAAAAG-AAGATAAAAT
1 AAAAAGTAAAATAAAAT
2093405 CATAACATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.76, C:0.00, G:0.09, T:0.15
Consensus pattern (18 bp):
AAAAAGTAAAATAAAATA
Found at i:2095130 original size:52 final size:53
Alignment explanation
Indices: 2095041--2095163 Score: 160
Period size: 52 Copynumber: 2.4 Consensus size: 53
2095031 GATTAACGGG
* * *
2095041 GTTGGAGTATCCCCGATT-ATGAAAAATTAGTGTTTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTTTTTGAAAATAAAACCAGA
* * * * *
2095093 GTTGGAGTATCCTCGATTAAAGGAAAATTGGTG-TTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTTTTTGAAAATAAAACCAGA
2095145 GTTGGAGTATCCCCGATTA
1 GTTGGAGTATCCCCGATTA
2095164 TGAACAATTG
Statistics
Matches: 61, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 50 0.82
53 11 0.18
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.31
Consensus pattern (53 bp):
GTTGGAGTATCCCCGATTAAAGAAAAATTAGTGTTTTTGAAAATAAAACCAGA
Found at i:2098873 original size:52 final size:52
Alignment explanation
Indices: 2098785--2098883 Score: 146
Period size: 52 Copynumber: 1.9 Consensus size: 52
2098775 CCCGAAATAT
**
2098785 GAAAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGG
* *
2098837 GAAAATTTGCTTGCATGTATCGATACA-AAGATTAGTGTATCGATACA
1 GAAAATTTGCCTGCATGTATCGATACATAACA-TAGTGTATCGATACA
2098884 ATGTATCGAG
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 1 0.02
52 41 0.98
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.33
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATAACATAGTGTATCGATACATCTGG
Found at i:2098959 original size:13 final size:13
Alignment explanation
Indices: 2098941--2098992 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
2098931 AGCTTCGTAG
2098941 CGATACATTGTAT
1 CGATACATTGTAT
2098954 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
2098973 CGATACATTGTAT
1 CGATACATTGTAT
2098986 CGATACA
1 CGATACA
2098993 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:2098973 original size:19 final size:19
Alignment explanation
Indices: 2098949--2099013 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
2098939 AGCGATACAT
2098949 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
2098968 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
2098981 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
2099000 TGTATGGATACAAA
1 TGTATCGATACAAA
2099014 TCGTTGAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 12
0.73 0.04 0.23
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:2098982 original size:32 final size:32
Alignment explanation
Indices: 2098941--2099011 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
2098931 AGCTTCGTAG
2098941 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
2098973 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
2099005 GGATACA
1 CGATACA
2099012 AATCGTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:2099850 original size:13 final size:13
Alignment explanation
Indices: 2099832--2099857 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2099822 ACAAAGATAG
2099832 ATGTATCGATACA
1 ATGTATCGATACA
2099845 ATGTATCGATACA
1 ATGTATCGATACA
2099858 TTTCCTTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2099870 original size:21 final size:21
Alignment explanation
Indices: 2099844--2099885 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
2099834 GTATCGATAC
2099844 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
2099865 AATGTATCGATACATTTCCTT
1 AATGTATCGATACATTTCCTT
2099886 GGCAGTAGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.43
Consensus pattern (21 bp):
AATGTATCGATACATTTCCTT
Found at i:2099933 original size:19 final size:19
Alignment explanation
Indices: 2099909--2100086 Score: 188
Period size: 19 Copynumber: 10.6 Consensus size: 19
2099899 AACGATACAT
2099909 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2099928 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
2099941 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2099960 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
2099973 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2099992 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
2100005 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2100024 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
2100037 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2100056 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
2100075 TGTATCGATACA
1 TGTATCGATACA
2100087 TTTACGATTT
Statistics
Matches: 135, Mismatches: 0, Indels: 48
0.74 0.00 0.26
Matches are distributed among these distances:
13 36 0.27
14 4 0.03
16 24 0.18
18 4 0.03
19 67 0.50
ACGTcount: A:0.35, C:0.19, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:2099942 original size:32 final size:32
Alignment explanation
Indices: 2099896--2100067 Score: 335
Period size: 32 Copynumber: 5.4 Consensus size: 32
2099886 GGCAGTAGCT
*
2099896 TGTAACGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
2099928 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
2099960 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
2099992 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
2100024 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
2100056 TGTATCGATACA
1 TGTATCGATACA
2100068 ACACTTATGT
Statistics
Matches: 139, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 139 1.00
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:2100211 original size:13 final size:12
Alignment explanation
Indices: 2100193--2100223 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
2100183 GACAAAAATG
2100193 TTTTTTTTAATTA
1 TTTTTTTT-ATTA
2100206 TTTTTTTTATTA
1 TTTTTTTTATTA
2100218 TTTTTT
1 TTTTTT
2100224 CTTTTTTGCC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 10 0.56
13 8 0.44
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTTTTTATTA
Found at i:2102120 original size:81 final size:76
Alignment explanation
Indices: 2102014--2102171 Score: 190
Period size: 76 Copynumber: 2.0 Consensus size: 76
2102004 CTTTCAACTG
* * * *
2102014 TGATATTTATAATCAATCAACTTTTTAGCTTTTTTATCAAAAGAAATCTGATTCTCAAATATAAT
1 TGATACTTATAATCAACCAAC-TTTT---TTTTTTACCAAAA-AAATCTGATTCTCAAATACAAT
*
2102079 TTATGCATTAGTCTAA
61 TGATGCATTAGTCTAA
* ** *
2102095 TGATACTTATAATCAACCAAGTTTTTTTTTTACCAAAAAAATCTGATTCTCATGTACAGTTGATG
1 TGATACTTATAATCAACCAACTTTTTTTTTTACCAAAAAAATCTGATTCTCAAATACAATTGATG
2102160 CATTAGTCTAA
66 CATTAGTCTAA
2102171 T
1 T
2102172 CCTTGCAGTC
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
76 34 0.50
77 12 0.18
80 4 0.06
81 18 0.26
ACGTcount: A:0.35, C:0.14, G:0.09, T:0.42
Consensus pattern (76 bp):
TGATACTTATAATCAACCAACTTTTTTTTTTACCAAAAAAATCTGATTCTCAAATACAATTGATG
CATTAGTCTAA
Found at i:2102210 original size:69 final size:67
Alignment explanation
Indices: 2102116--2102390 Score: 275
Period size: 69 Copynumber: 4.0 Consensus size: 67
2102106 ATCAACCAAG
* * * * *
2102116 TTTTTTTT-TTACCAAAAAAATCTGATTCTCATG-TACAGTTGATGCATTAGTCTAATCCTTGCA
1 TTTTTTTTCTTA-TAAAAAAATCTGATTCTTA-GATATAATTAATGCATTAGTCTAATCCTTGCA
2102179 GTCT
64 GTCT
* *
2102183 TTTTTTTTCTTATTAAAAAAATTCTGATTTTTAGATATAATTAATGTATTAGTCTAATCCTTGCA
1 TTTTTTTTCTTA-TAAAAAAA-TCTGATTCTTAGATATAATTAATGCATTAGTCTAATCCTTGCA
*
2102248 ATCT
64 GTCT
* * *
2102252 TTCTTTTTCTTATAAAAAAGAATCTGATTCTTAGATATAATTCATGCATTAGTCTAATCCTTGTA
1 TTTTTTTTCTTAT-AAAAA-AATCTGATTCTTAGATATAATTAATGCATTAGTCTAATCCTTGCA
*
2102317 GTAT
64 GTCT
* ** * * * * *
2102321 TTCTTTTTTCCTATAAAAAAGGATCCAATTCTCAGATTTAATTAATACATTAGTCTAATCTTTAC
1 TT-TTTTTTCTTATAAAAAA--ATCTGATTCTTAGATATAATTAATGCATTAGTCTAATCCTTGC
2102386 AGTCT
63 AGTCT
2102391 AACATTTATA
Statistics
Matches: 172, Mismatches: 28, Indels: 13
0.81 0.13 0.06
Matches are distributed among these distances:
67 8 0.05
68 13 0.08
69 102 0.59
70 49 0.28
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (67 bp):
TTTTTTTTCTTATAAAAAAATCTGATTCTTAGATATAATTAATGCATTAGTCTAATCCTTGCAGT
CT
Found at i:2102372 original size:70 final size:69
Alignment explanation
Indices: 2102157--2102390 Score: 285
Period size: 69 Copynumber: 3.4 Consensus size: 69
2102147 TGTACAGTTG
*
2102157 ATGCATTAGTCTAATCCTTGCAGTCTTT-TTTTTTCTTATTAAAAAA-ATTCTGATTTTTAGATA
1 ATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCTTA-TAAAAAAGA-TCTGATTCTTAGATA
2102220 TAATTA
64 TAATTA
* *
2102226 ATGTATTAGTCTAATCCTTGCAATCTTTC-TTTTTCTTATAAAAAAGAATCTGATTCTTAGATAT
1 ATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCTTATAAAAAAG-ATCTGATTCTTAGATAT
*
2102290 AATTC
65 AATTA
* * * ** * *
2102295 ATGCATTAGTCTAATCCTTGTAGTATTTCTTTTTTCCTATAAAAAAGGATCCAATTCTCAGATTT
1 ATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCTTATAAAAAA-GATCTGATTCTTAGATAT
2102360 AATTA
65 AATTA
* * *
2102365 ATACATTAGTCTAATCTTTACAGTCT
1 ATGCATTAGTCTAATCCTTGCAGTCT
2102391 AACATTTATA
Statistics
Matches: 141, Mismatches: 19, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
68 7 0.05
69 79 0.56
70 54 0.38
71 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.09, T:0.45
Consensus pattern (69 bp):
ATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCTTATAAAAAAGATCTGATTCTTAGATATA
ATTA
Found at i:2102465 original size:93 final size:92
Alignment explanation
Indices: 2102320--2103213 Score: 981
Period size: 93 Copynumber: 9.9 Consensus size: 92
2102310 CCTTGTAGTA
* * ** * * * *
2102320 TTTCTTTTTTCCTATAAAAAAGGATCCAATTCTCAGATTTAATTAATACATTAGTCTAATCTTTA
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
* *
2102385 CAGTCTAACATTTATAATCAATCAGTC
66 CAGTCTGACATTTACAATCAATCAGTC
* *
2102412 TTTCTTTTTTTTCTATAAAAAAAAATCTGATTCTCAGATATAATTCATACATTAGTCTAATCCTT
1 TTTC-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* * *
2102477 ACAATCTGATATTTACAATTAATCAGTC
65 ACAGTCTGACATTTACAATCAATCAGTC
* * * * * *
2102505 TTTCTTTTTTTTTTATAAAAAGGAATCCGATTCTCAAATATAATTCATACATTAGTCTAATCATT
1 TTTC-TTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
** *
2102570 GTAGTCTGACATTTACAATCAAGCAGTC
65 ACAGTCTGACATTTACAATCAATCAGTC
* *
2102598 TTTCTTTTTTTTTCTATAAAAAAGAAT-TCGATTCTCAAATATAATTCATGCATTAGTCTAATTC
1 TTTC--TTTTTTTCTATAAAAAAGAATCT-GATTCTCAGATATAATTCATGCATTAGTCTAATCC
** * * * *
2102662 TTGTAATCTAATATTT---AT-ATTCAGT-
63 TTACAGTCTGACATTTACAATCAATCAGTC
*** * *
2102687 AAAC-TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGTATTAGTCTAATTCTTA
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
* * *
2102751 TAGTCTGACATTTACAATCAGTCA-AC
66 CAGTCTGACATTTACAATCAATCAGTC
*
2102777 TTTTCTTTTTTT-TATAAAAAA-AATCTGATTCTCAGATATAATTCATGTATTAGTCTAATCCTT
1 -TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
* * * * *
2102840 ATAGTCTGATATTTATAATTAATCAATC
65 ACAGTCTGACATTTACAATCAATCAGTC
* * * *
2102868 TTTCTTTTTTTCTATAAAAAAGAATCCGATTCTCATATATAATTCATGAATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
2102933 CAGTCTGACATTTACAATCAATCAGTC
66 CAGTCTGACATTTACAATCAATCAGTC
* * * *
2102960 TTTCTTTTTTTCTAT-AAAAA-ATTC-GATTCTCAAATATAATTAATGCATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
2103022 CAGTCTGACATTTACAA-C---CAGTC
66 CAGTCTGACATTTACAATCAATCAGTC
** * * * *
2103045 -AACTTTTTTTCTATAAAAAAGAATCTGATTCTTAGATATAATTTATGCATTACTATAATCCTTA
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
* *
2103109 CAGTCTGACATTTATAATCAATCA-AC
66 CAGTCTGACATTTACAATCAATCAGTC
* *
2103135 --T-TTTTTTTCTAT-AAAAA-AATTTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
*
2103195 TAGTCTGACATTTACAATC
66 CAGTCTGACATTTACAATC
2103214 GATTCTCAAA
Statistics
Matches: 692, Mismatches: 89, Indels: 48
0.83 0.11 0.06
Matches are distributed among these distances:
84 12 0.02
85 10 0.01
86 122 0.18
87 54 0.08
88 13 0.02
89 55 0.08
90 86 0.12
91 29 0.04
92 86 0.12
93 160 0.23
94 65 0.09
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.43
Consensus pattern (92 bp):
TTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
CAGTCTGACATTTACAATCAATCAGTC
Found at i:2103121 original size:176 final size:177
Alignment explanation
Indices: 2102323--2103213 Score: 1006
Period size: 176 Copynumber: 5.0 Consensus size: 177
2102313 TGTAGTATTT
* * * * * * *
2102323 CTTTTTTCCTATAAAAAAGGATCCAATTCTCAGATTTAATTAATACATTAGTCTAATCTTTACAG
1 CTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTACAG
* * *
2102388 TCTAACATTTATAATCAATCAGTCTTTCTTTTTTTTCTATAAAAAAAAATCTGATTCTCAGATAT
66 TCTGACATTTACAATCAATCAGTCTTTC-TTTTTTTCTAT-AAAAAAATTC-GATTCTCAGATAT
* ** * **
2102453 AATTCATACATTAGTCTAATCCTTACAATCTGATATTTACAATTAATCAGTCTTT
128 AATTCATGCATTAGTCTAATCCTTGTAGTCTGATATTTAC----AATCAGTC-AA
* * * * * **
2102508 CTTTTTTTTTTATAAAAAGGAATCCGATTCTCAAATATAATTCATACATTAGTCTAATCATTGTA
1 C-TTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTACA
* *
2102573 GTCTGACATTTACAATCAAGCAGTCTTTCTTTTTTTTTCTATAAAAAAGAATTCGATTCTCAAAT
65 GTCTGACATTTACAATCAATCAGTCTTTC--TTTTTTTCTAT-AAAAA-AATTCGATTCTCAGAT
* * * * * *
2102638 ATAATTCATGCATTAGTCTAATTCTTGTAATCTAATATTTATATTCAGTAAA
126 ATAATTCATGCATTAGTCTAATCCTTGTAGTCTGATATTTACAATCAGTCAA
* * * *
2102690 C-TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGTATTAGTCTAATTCTTATAG
1 CTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTACAG
* * *
2102754 TCTGACATTTACAATCAGTCA-ACTTTTCTTTTTTT-TATAAAAAAAATCTGATTCTCAGATATA
66 TCTGACATTTACAATCAATCAGTC-TTTCTTTTTTTCTATAAAAAAATTC-GATTCTCAGATATA
* * * * *
2102817 ATTCATGTATTAGTCTAATCCTTATAGTCTGATATTTATAATTAATCAA
129 ATTCATGCATTAGTCTAATCCTTGTAGTCTGATATTTACAATCAGTCAA
* *
2102866 TCTTTCTTTTTTTCTATAAAAAAGAATCCGATTCTCATATATAATTCATGAATTAGTCTAATCCT
1 -----CTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCT
* *
2102931 TGCAGTCTGACATTTACAATCAATCAGTCTTTCTTTTTTTCTAT-AAAAAATTCGATTCTCAAAT
61 TACAGTCTGACATTTACAATCAATCAGTCTTTCTTTTTTTCTATAAAAAAATTCGATTCTCAGAT
* * * *
2102995 ATAATTAATGCATTAGTCTAATCCTTGCAGTCTGACATTTACAACCAGTCAA
126 ATAATTCATGCATTAGTCTAATCCTTGTAGTCTGATATTTACAATCAGTCAA
* * * * *
2103047 CTTTTTTTCTATAAAAAAGAATCTGATTCTTAGATATAATTTATGCATTACTATAATCCTTACAG
1 CTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTACAG
* * *
2103112 TCTGACATTTATAATCAATCA-AC--T-TTTTTTTCTATAAAAAAATTTGATTCTCAGATATAAT
66 TCTGACATTTACAATCAATCAGTCTTTCTTTTTTTCTATAAAAAAATTCGATTCTCAGATATAAT
*
2103173 TCATGCATTAGTCTAATCCTTGTAGTCTGACATTTACAATC
131 TCATGCATTAGTCTAATCCTTGTAGTCTGATATTTACAATC
2103214 GATTCTCAAA
Statistics
Matches: 609, Mismatches: 83, Indels: 40
0.83 0.11 0.05
Matches are distributed among these distances:
172 11 0.02
173 62 0.10
175 5 0.01
176 135 0.22
177 3 0.00
178 7 0.01
179 1 0.00
180 77 0.13
181 54 0.09
182 97 0.16
183 10 0.02
185 1 0.00
186 78 0.13
187 64 0.11
188 4 0.01
ACGTcount: A:0.34, C:0.16, G:0.08, T:0.42
Consensus pattern (177 bp):
CTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTACAG
TCTGACATTTACAATCAATCAGTCTTTCTTTTTTTCTATAAAAAAATTCGATTCTCAGATATAAT
TCATGCATTAGTCTAATCCTTGTAGTCTGATATTTACAATCAGTCAA
Found at i:2103245 original size:57 final size:58
Alignment explanation
Indices: 2103157--2103271 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 58
2103147 AAAAAAATTT
* **
2103157 GATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGTA-GTCTGACATTTACAATC
1 GATTCTCAAATATAATTCATGCATTAGTCTAATCCTTACAGGTCTGACATTTACAATC
*
2103214 GATTCTCAAATATAATTCATGCATTAGTCTAATCTTTACAGGTCTGACATTTACAATC
1 GATTCTCAAATATAATTCATGCATTAGTCTAATCCTTACAGGTCTGACATTTACAATC
2103272 AATCAATCAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
57 36 0.68
58 17 0.32
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.38
Consensus pattern (58 bp):
GATTCTCAAATATAATTCATGCATTAGTCTAATCCTTACAGGTCTGACATTTACAATC
Found at i:2103417 original size:92 final size:95
Alignment explanation
Indices: 2103214--2103422 Score: 259
Period size: 97 Copynumber: 2.2 Consensus size: 95
2103204 ATTTACAATC
* *
2103214 GATTCTCAA-ATATAATTCATGCATTAGTCTAATCTTTACAGGTCTGACATTTACAATCAATCAA
1 GATTCT-AAGATATAATTCATACATTAGTCTAATCCTTACAGGTCTGACATTT--AATCAATCAA
*
2103278 TCAACTTTTCTTTTTTTTCTATAAAAAAAAATT
63 TCAACTTTTCTTTTTTTTCCATAAAAAAAAATT
* * *
2103311 GATTCTCAGATATAATTCATACATTAGTCTAATCCTTGCA-GTCTGATATTT-A-CAATCAATCA
1 GATTCTAAGATATAATTCATACATTAGTCTAATCCTTACAGGTCTGACATTTAATCAATCAATCA
*
2103373 ACTTTTC-TTTTTTTCCATAAAAAAGAATCT
66 ACTTTTCTTTTTTTTCCATAAAAAAAAAT-T
* *
2103403 GATTTTAAGCTATAA-TCATA
1 GATTCTAAGATATAATTCATA
2103423 TTTATTTTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
91 24 0.24
92 30 0.30
93 1 0.01
96 11 0.11
97 34 0.34
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (95 bp):
GATTCTAAGATATAATTCATACATTAGTCTAATCCTTACAGGTCTGACATTTAATCAATCAATCA
ACTTTTCTTTTTTTTCCATAAAAAAAAATT
Found at i:2103701 original size:38 final size:39
Alignment explanation
Indices: 2103659--2103749 Score: 94
Period size: 38 Copynumber: 2.4 Consensus size: 39
2103649 TATTAGTGAC
*
2103659 ATTTTTTAAATTTTAATAAATAATCTAT-AATTACTAAT
1 ATTTTTTAAATTTTAATAAAAAATCTATGAATTACTAAT
* * * * * *
2103697 ATTTTTCAAAATATAATAAAAAATTTATGTATTACTCAT
1 ATTTTTTAAATTTTAATAAAAAATCTATGAATTACTAAT
* *
2103736 ATCTTTTAGATTTT
1 ATTTTTTAAATTTT
2103750 TATTAACTTT
Statistics
Matches: 40, Mismatches: 12, Indels: 1
0.75 0.23 0.02
Matches are distributed among these distances:
38 23 0.57
39 17 0.43
ACGTcount: A:0.42, C:0.07, G:0.02, T:0.49
Consensus pattern (39 bp):
ATTTTTTAAATTTTAATAAAAAATCTATGAATTACTAAT
Found at i:2104162 original size:31 final size:33
Alignment explanation
Indices: 2104120--2104266 Score: 88
Period size: 31 Copynumber: 4.2 Consensus size: 33
2104110 AAGAAAAAAA
2104120 TTAAATAAAATTAAAAATAATATTTAATTAA-GT
1 TTAAA-AAAATTAAAAATAATATTTAATTAATGT
*
2104153 TTAAAAAATTACATTAACAAATTAAAATTTAATTATTATGTTT
1 TT-AAAAA--A-ATTAA-AAA-TAATATTTAATTA--ATG--T
* * *
2104196 TTATAAAAATAAAAAAT-AT-TTTATTATAAT-T
1 TTAAAAAAATTAAAAATAATATTTAAT-TAATGT
* * *
2104227 TTTAATAAATAAAAAATAATATTTAATTAA-GT
1 TTAAAAAAATTAAAAATAATATTTAATTAATGT
2104259 TTAAAAAA
1 TTAAAAAA
2104267 TTATATTAAC
Statistics
Matches: 88, Mismatches: 11, Indels: 31
0.68 0.08 0.24
Matches are distributed among these distances:
31 15 0.17
32 12 0.14
33 9 0.10
34 5 0.06
35 6 0.07
36 8 0.09
37 4 0.05
38 15 0.17
39 4 0.05
40 2 0.02
41 1 0.01
42 4 0.05
43 3 0.03
ACGTcount: A:0.55, C:0.01, G:0.02, T:0.41
Consensus pattern (33 bp):
TTAAAAAAATTAAAAATAATATTTAATTAATGT
Found at i:2104191 original size:90 final size:92
Alignment explanation
Indices: 2104041--2104212 Score: 237
Period size: 90 Copynumber: 1.9 Consensus size: 92
2104031 TTATTTTTAA
* *
2104041 TAAAAATAAAATTTAATTAACTTTAAAAAAATTTATATTAACAAATTAAAATAGTAATTAT-TTT
1 TAAAAATAAAATTTAATTAACTTTAAAAAAATTTACATTAACAAATTAAAATAATAATTATGTTT
2104105 TTA-AAAAGA-AAAAAATTAAATAAAAT
66 TTATAAAA-ATAAAAAATTAAATAAAAT
* * *
2104131 TAAAAATAATATTTAATTAAGTTT-AAAAAA-TTACATTAACAAATTAAAATTTAATTATTATGT
1 TAAAAATAAAATTTAATTAACTTTAAAAAAATTTACATTAACAAATTAAAA--TAATAATTATGT
2104194 TTTTATAAAAATAAAAAAT
64 TTTTATAAAAATAAAAAAT
2104213 ATTTTATTAT
Statistics
Matches: 72, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
88 18 0.25
89 6 0.08
90 30 0.42
91 7 0.10
92 11 0.15
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (92 bp):
TAAAAATAAAATTTAATTAACTTTAAAAAAATTTACATTAACAAATTAAAATAATAATTATGTTT
TTATAAAAATAAAAAATTAAATAAAAT
Found at i:2104260 original size:106 final size:105
Alignment explanation
Indices: 2104127--2104317 Score: 339
Period size: 106 Copynumber: 1.8 Consensus size: 105
2104117 AAATTAAATA
*
2104127 AAATTAAAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAAT-TTAATTATTA
1 AAATAAAAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAATATTAATTATTA
2104191 TGTTTTTATAAAAATAAAAAATATTTTATTATAATTTTTAAT
66 TG-TTTT-TAAAAATAAAAAATATTTTATTATAATTTTTAAT
*
2104233 AAATAAAAAATAATATTTAATTAAGTTTAAAAAATTATATTAACAAATTAAAATATTAATTATTA
1 AAATAAAAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAATATTAATTATTA
2104298 TGTTTTTAAAAATAAAAAAT
66 TGTTTTTAAAAATAAAAAAT
2104318 TTTAAATTAA
Statistics
Matches: 82, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
105 14 0.17
106 56 0.68
107 12 0.15
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (105 bp):
AAATAAAAAATAATATTTAATTAAGTTTAAAAAATTACATTAACAAATTAAAATATTAATTATTA
TGTTTTTAAAAATAAAAAATATTTTATTATAATTTTTAAT
Found at i:2104700 original size:24 final size:24
Alignment explanation
Indices: 2104665--2104735 Score: 60
Period size: 22 Copynumber: 3.1 Consensus size: 24
2104655 CTGAAATGTT
* *
2104665 ATTTTTT-TAATTTGTT-AATATAA
1 ATTTTTTAAAATTTATTAAATAT-A
*
2104688 ATTTTTTAAAATTTATTAAATATT
1 ATTTTTTAAAATTTATTAAATATA
* *
2104712 ATTTTTT--ATTTTATTAAAAATA
1 ATTTTTTAAAATTTATTAAATATA
2104734 AT
1 AT
2104736 AATAAATACT
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
22 14 0.35
23 7 0.17
24 14 0.35
25 5 0.12
ACGTcount: A:0.39, C:0.00, G:0.01, T:0.59
Consensus pattern (24 bp):
ATTTTTTAAAATTTATTAAATATA
Found at i:2104775 original size:26 final size:23
Alignment explanation
Indices: 2104746--2104806 Score: 59
Period size: 26 Copynumber: 2.4 Consensus size: 23
2104736 AATAAATACT
2104746 TTTTATTTTTATACATATAATTAATA
1 TTTTATTTTTA-A-ATATAATTAA-A
*
2104772 TTTTAATATTTTAAATTTAATTAAA
1 TTTT-AT-TTTTAAATATAATTAAA
*
2104797 TATTATTTTT
1 TTTTATTTTT
2104807 TATTTTATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
23 4 0.13
24 2 0.06
25 4 0.13
26 13 0.42
27 3 0.10
28 5 0.16
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (23 bp):
TTTTATTTTTAAATATAATTAAA
Found at i:2104783 original size:28 final size:25
Alignment explanation
Indices: 2104729--2104808 Score: 63
Period size: 28 Copynumber: 3.0 Consensus size: 25
2104719 ATTTTATTAA
* *
2104729 AAATAATAATAAATACTTTTTATTTTT
1 AAAT-ATAATTAATA-TTTTAATTTTT
2104756 ATACATATAATTAATATTTTAATATTTT
1 A-A-ATATAATTAATATTTTAAT-TTTT
* * *
2104784 AAATTTAATTAA-ATATTATTTTTT
1 AAATATAATTAATATTTTAATTTTT
2104808 A
1 A
2104809 TTTTATTAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
24 5 0.11
25 6 0.13
26 9 0.20
27 8 0.18
28 15 0.33
29 2 0.04
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.54
Consensus pattern (25 bp):
AAATATAATTAATATTTTAATTTTT
Found at i:2104818 original size:32 final size:30
Alignment explanation
Indices: 2104688--2104818 Score: 85
Period size: 31 Copynumber: 4.3 Consensus size: 30
2104678 GTTAATATAA
*
2104688 ATTTTTTAAA-ATTTATTAAATATTATTTTTT
1 ATTTTTTAAATA-TAATT-AATATTATTTTTT
* * *
2104719 ATTTTATTAAAAATAA-TAATAAATACTTTTT
1 ATTTT-TTAAATATAATTAAT-ATTATTTTTT
* *
2104750 ATTTTTATACATATAATT-A-A-TA-TTTTA
1 ATTTTT-TAAATATAATTAATATTATTTTTT
* *
2104777 ATATTTTAAATTTAATTAAATATTATTTTTT
1 ATTTTTTAAATATAATT-AATATTATTTTTT
2104808 ATTTTATTAAA
1 ATTTT-TTAAA
2104819 AAATAATAAT
Statistics
Matches: 78, Mismatches: 11, Indels: 21
0.71 0.10 0.19
Matches are distributed among these distances:
26 9 0.12
27 9 0.12
28 3 0.04
29 2 0.03
30 6 0.08
31 35 0.45
32 13 0.17
33 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (30 bp):
ATTTTTTAAATATAATTAATATTATTTTTT
Found at i:2105044 original size:13 final size:13
Alignment explanation
Indices: 2105006--2105044 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
2104996 ACAATTAAAA
2105006 TTTATAAAAAATTAT
1 TTTAT-AAAAA-TAT
2105021 TTTA-AAAAATAT
1 TTTATAAAAATAT
2105033 TTTATAAAAATA
1 TTTATAAAAATA
2105045 AAATAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 7 0.30
13 12 0.52
15 4 0.17
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TTTATAAAAATAT
Found at i:2106109 original size:16 final size:16
Alignment explanation
Indices: 2106088--2106125 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
2106078 AGATAGATCG
2106088 TTAAAATTTGTCTATA
1 TTAAAATTTGTCTATA
*
2106104 TTAAAATTTGTCTATG
1 TTAAAATTTGTCTATA
2106120 TTAAAA
1 TTAAAA
2106126 AGCTTTTGAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (16 bp):
TTAAAATTTGTCTATA
Found at i:2111350 original size:20 final size:20
Alignment explanation
Indices: 2111325--2111399 Score: 150
Period size: 20 Copynumber: 3.8 Consensus size: 20
2111315 ATTTGCCTGC
2111325 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
2111345 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
2111365 ATGTATCGATACATTGAATA
1 ATGTATCGATACATTGAATA
2111385 ATGTATCGATACATT
1 ATGTATCGATACATT
2111400 TCCTTGGCAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 55 1.00
ACGTcount: A:0.39, C:0.11, G:0.15, T:0.36
Consensus pattern (20 bp):
ATGTATCGATACATTGAATA
Found at i:2111462 original size:19 final size:20
Alignment explanation
Indices: 2111438--2111490 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
2111428 ATCTATACAT
2111438 TGTATCGATACAATACT-TA
1 TGTATCGATACAATACTGTA
* *
2111457 TGTATCGATACATTTACTGTT
1 TGTATCGATACA-ATACTGTA
2111478 TGTATCGATACAA
1 TGTATCGATACAA
2111491 ATTATTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
19 12 0.41
20 4 0.14
21 13 0.45
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (20 bp):
TGTATCGATACAATACTGTA
Found at i:2113012 original size:22 final size:22
Alignment explanation
Indices: 2112970--2113013 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
2112960 AACCCTTTAC
* *
2112970 AATTTGACATTTTTTTGATGAA
1 AATTTGACAATTTTTGGATGAA
2112992 AATTT-ACAATTTTTGGAATGAA
1 AATTTGACAATTTTTGG-ATGAA
2113014 GGAGTATGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.36, C:0.05, G:0.14, T:0.45
Consensus pattern (22 bp):
AATTTGACAATTTTTGGATGAA
Found at i:2125642 original size:15 final size:14
Alignment explanation
Indices: 2125622--2125706 Score: 57
Period size: 16 Copynumber: 5.7 Consensus size: 14
2125612 ATTATATCTA
2125622 ATTAAAATATGATAT
1 ATTAAAATAT-ATAT
2125637 ATTAAAAATATATAT
1 ATT-AAAATATATAT
*
2125652 TTTAAAATATA-AT
1 ATTAAAATATATAT
* *
2125665 A-TAAATTATTAATTT
1 ATTAAAATA-T-ATAT
*
2125680 ATTAAAATTAATATAA
1 ATTAAAA-T-ATATAT
2125696 ATATAAAATAT
1 AT-TAAAATAT
2125707 TTTAAATATA
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
12 6 0.11
13 3 0.05
14 9 0.16
15 13 0.24
16 16 0.29
17 7 0.13
18 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.42
Consensus pattern (14 bp):
ATTAAAATATATAT
Found at i:2125670 original size:25 final size:25
Alignment explanation
Indices: 2125633--2125718 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 25
2125623 TTAAAATATG
* *
2125633 ATATATTAAAAATATATATTTTAAA
1 ATATAATATAAATATATATTTTAAA
2125658 ATATAATATAAAT-TATTAATTTATTAAA
1 ATATAATATAAATATA-T-A-TT-TTAAA
2125686 AT-TAATATAAATATAAAATATTTT-AA
1 ATATAATATAAATAT---ATATTTTAAA
2125712 ATATAAT
1 ATATAAT
2125719 TATTATATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 16
0.74 0.03 0.24
Matches are distributed among these distances:
24 2 0.04
25 12 0.24
26 5 0.10
27 18 0.36
28 10 0.20
29 1 0.02
30 1 0.02
31 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (25 bp):
ATATAATATAAATATATATTTTAAA
Found at i:2125711 original size:27 final size:28
Alignment explanation
Indices: 2125648--2125718 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 28
2125638 TTAAAAATAT
*
2125648 ATATTTTAAAATATAATATAAATTATTA
1 ATATTTTAAAATATAATATAAATTATAA
2125676 AT-TTATTAAAAT-TAATATAAA-TATAAA
1 ATATT-TTAAAATATAATATAAATTAT-AA
2125703 ATATTTT-AAATATAAT
1 ATATTTTAAAATATAAT
2125719 TATTATATAA
Statistics
Matches: 38, Mismatches: 1, Indels: 9
0.79 0.02 0.19
Matches are distributed among these distances:
26 7 0.18
27 20 0.53
28 11 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (28 bp):
ATATTTTAAAATATAATATAAATTATAA
Found at i:2138236 original size:27 final size:27
Alignment explanation
Indices: 2138164--2138580 Score: 441
Period size: 27 Copynumber: 15.1 Consensus size: 27
2138154 ATTGTGACAT
* * *
2138164 TTTTAAAGTCCACGACTCAGTGGCATTTCT
1 TTTT-AAGTCCACAACTCCGTGGCA--TCC
2138194 TTTTAAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCATCC
2138222 TTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCATCC
* *
2138249 TTGTAAAGTCCACAACTCCGTGGCACCC
1 TT-TTAAGTCCACAACTCCGTGGCATCC
*
2138277 TTTTAAGTCCACAACTTCGTGGCA-CTC
1 TTTTAAGTCCACAACTCCGTGGCATC-C
*
2138304 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCATCC
* * *
2138332 TTTTAAGTCCATAACTCCTTGGCATCA
1 TTTTAAGTCCACAACTCCGTGGCATCC
* * *
2138359 TTTAAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCATCC
*
2138386 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCATCC
*
2138412 TTTTTAAGTCCACAACTCTGTGGCA-CTC
1 -TTTTAAGTCCACAACTCCGTGGCATC-C
*
2138440 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCATCC
* * *
2138468 TTTTAAATCCACAACTCCGTGGTATCT
1 TTTTAAGTCCACAACTCCGTGGCATCC
2138495 TTTTAAGTCCACAACTCCGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCATCC
* * *
2138521 TTTCAAAG-CCTACAAGTCAGTGGCATCC
1 TTT-TAAGTCC-ACAACTCCGTGGCATCC
* * *
2138549 TTTTCAAAGCCCACAAGTCAGTGGCAT-C
1 TTTT--AAGTCCACAACTCCGTGGCATCC
2138577 TTTT
1 TTTT
2138581 CAAAGCCCAC
Statistics
Matches: 342, Mismatches: 31, Indels: 30
0.85 0.08 0.07
Matches are distributed among these distances:
26 9 0.03
27 198 0.58
28 90 0.26
29 20 0.06
30 25 0.07
ACGTcount: A:0.24, C:0.30, G:0.15, T:0.30
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCATCC
Found at i:2138266 original size:55 final size:55
Alignment explanation
Indices: 2138164--2138592 Score: 494
Period size: 55 Copynumber: 7.8 Consensus size: 55
2138154 ATTGTGACAT
* * * *
2138164 TTTTAAAGTCCACGACTCAGTGGCATTTCTTTTTAAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCA--TCCTTTTAAAGTCCACAACTCCGTGGCACCC
*
2138222 TTTTAAGTCCACAACTCCGTGGCATCCTTGTAAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCC
*
2138277 TTTTAAGTCCACAACTTCGTGGCA-CTCTTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCATC-CTTTTAAAGTCCACAACTCCGTGGCACCC
* * * *
2138332 TTTTAAGTCCATAACTCCTTGGCAT-CATTTAAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCC
* * * *
2138386 TTTTAAGTCCACAACTCTGTGGCA-CCTTTTTAAGTCCACAACTCTGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCC
* * * *
2138440 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAA-TCCACAACTCCGTGGTATCT
1 TTTT-AAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCC
* * * *
2138495 TTTTAAGTCCACAACTCCGTGGCA-CCTTTCAAAG-CCTACAAGTCAGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCC-ACAACTCCGTGGCACCC
* * * *
2138549 TTTTCAAAGCCCACAAGTCAGTGGCAT-CTTTTCAAAGCCCACAA
1 TTTT--AAGTCCACAACTCCGTGGCATCCTTTT-AAAGTCCACAA
2138593 GTGAGTGGGC
Statistics
Matches: 325, Mismatches: 34, Indels: 25
0.85 0.09 0.07
Matches are distributed among these distances:
53 10 0.03
54 116 0.36
55 138 0.42
56 29 0.09
57 26 0.08
58 6 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (55 bp):
TTTTAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACCC
Found at i:2138307 original size:82 final size:83
Alignment explanation
Indices: 2138194--2138580 Score: 475
Period size: 82 Copynumber: 4.7 Consensus size: 83
2138184 TGGCATTTCT
* * *
2138194 TTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTGTAAAGTC
1 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTAAGTC
2138259 CACAACTCCGTGGCACCC
66 CACAACTCCGTGGCACCC
* * *
2138277 TTTT-AAGTCCACAACTTCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCA-CCCTTTTAAGT
1 TTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCATCCTTTTTAAGT
* * *
2138340 CCATAACTCCTTGGCA-TC
65 CCACAACTCCGTGGCACCC
* * *
2138358 ATTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCA-CCTTTTTAAGTC
1 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTAAGTC
* *
2138422 CACAACTCTGTGGCACTC
66 CACAACTCCGTGGCACCC
* *
2138440 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAATCCACAACTCCGTGGTAT-CTTTTTAAGTC
1 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTAAGTC
2138504 CACAACTCCGTGGCA-CC
66 CACAACTCCGTGGCACCC
* * * * * * *
2138521 TTTCAAAG-CCTACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCAT-CTTTT
1 TTTTAAAGTCC-ACAACTCCGTGGCACCCTTTT--AAGTCCACAACTCCGTGGCATCCTTTT
2138581 CAAAGCCCAC
Statistics
Matches: 263, Mismatches: 34, Indels: 14
0.85 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 72 0.27
82 144 0.55
83 45 0.17
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.30
Consensus pattern (83 bp):
TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCATCCTTTTTAAGTC
CACAACTCCGTGGCACCC
Found at i:2138544 original size:109 final size:108
Alignment explanation
Indices: 2138194--2138592 Score: 489
Period size: 109 Copynumber: 3.6 Consensus size: 108
2138184 TGGCATTTCT
* *
2138194 TTTTAAAGTCCACAACTCCGTGGCATCCTTTTAAGTCCACAACTCCGTGGCATCCTTGTAAAGTC
1 TTTTAAAGTCCACAACTCAGTGGCATCCTTTTAAGTCCACAACTCCGTGGCA-CCTTTTAAAGTC
*
2138259 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTTCGTGGCACTC
65 CACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCAC-C
* * * * * *
2138304 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCCTTGGCATCATTTAAAGTCC
1 TTTTAAAGTCCACAACTCAGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCC
* *
2138369 ACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACC
66 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* *
2138412 TTTTTAAGTCCACAACTCTGTGGCA-CTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAA-
1 TTTTAAAGTCCACAACTCAGTGGCATC-CTTTT-AAGTCCACAACTCCGTGGCA-CCTTTTAAAG
* * *
2138475 TCCACAACTCCGTGGTATCTTTTTAAGTCCACAACTCCGTGGCACC
63 TCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
* * * * * *
2138521 TTTCAAAG-CCTACAAGTCAGTGGCATCCTTTTCAAAGCCCACAAGTCAGTGGCATCTTTTCAAA
1 TTTTAAAGTCC-ACAACTCAGTGGCATCCTTTT--AAGTCCACAACTCCGTGGCACCTTTT-AAA
*
2138585 GCCCACAA
62 GTCCACAA
2138593 GTGAGTGGGC
Statistics
Matches: 252, Mismatches: 29, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
107 1 0.00
108 31 0.12
109 136 0.54
110 78 0.31
111 6 0.02
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.29
Consensus pattern (108 bp):
TTTTAAAGTCCACAACTCAGTGGCATCCTTTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCC
ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACC
Found at i:2138559 original size:29 final size:29
Alignment explanation
Indices: 2138180--2138630 Score: 196
Period size: 27 Copynumber: 16.1 Consensus size: 29
2138170 AGTCCACGAC
* * * *
2138180 TCAGTGGCATTTCTTTTTAAAGTCCACAAC
1 TCAGTGGCA-TCCTTTTCAAAGCCCACAAG
* * *
2138210 TCCGTGGCATCCTTTT--AAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * * *
2138237 TCCGTGGCATCCTTGT-AAAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * * *
2138265 TCCGTGGCACCCTTTT--AAGTCCACAACT
1 TCAGTGGCATCCTTTTCAAAGCCCACAA-G
* *
2138293 TC-GTGGCA-CTCTTTT-AAAGTCCACAAC
1 TCAGTGGCATC-CTTTTCAAAGCCCACAAG
* * * * *
2138320 TCCGTGGCACCCTTTT--AAGTCCATAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
** * * *
2138347 TCCTTGGCAT-CATTT-AAAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * * *
2138374 TCTGTGGCACCCTTTT--AAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * * *
2138401 TCTGTGGCA-CCTTTT-TAAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * *
2138428 TCTGTGGCA-CTCTTTT-AAAGTCCACAAC
1 TCAGTGGCATC-CTTTTCAAAGCCCACAAG
* * * *
2138456 TCCGTGGCACCCTTTT-AAA-TCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* * * * *
2138483 TCCGTGGTAT-CTTTT-TAAGTCCACAAC
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
* *
2138510 TCCGTGGCA-CC-TTTCAAAGCCTACAAG
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
2138537 TCAGTGGCATCCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
2138566 TCAGTGGCAT-CTTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTTCAAAGCCCACAAG
*
2138594 TGAGTGGGCTAATCTCGTTTTCAAAGCCCACAAG
1 TCAGT-GGC--ATC-C-TTTTCAAAGCCCACAAG
2138628 TCA
1 TCA
2138631 ATATCATTTC
Statistics
Matches: 369, Mismatches: 30, Indels: 40
0.84 0.07 0.09
Matches are distributed among these distances:
26 21 0.06
27 174 0.47
28 108 0.29
29 36 0.10
30 8 0.02
31 2 0.01
33 1 0.00
34 19 0.05
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.29
Consensus pattern (29 bp):
TCAGTGGCATCCTTTTCAAAGCCCACAAG
Found at i:2138950 original size:27 final size:27
Alignment explanation
Indices: 2138908--2139261 Score: 483
Period size: 27 Copynumber: 13.0 Consensus size: 27
2138898 TGGCATTTCT
* *
2138908 TTTTAAAGTCCACAACTCCGTAGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
2138936 TTTTAAGTCCACAACTCCGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2138963 TTGTAAAGTCCACAACTCCGTGGCACCC
1 TT-TTAAGTCCACAACTCCGTGGCACCC
2138991 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2139018 TTTTAAGTCCACAACTTCGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
2139045 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
* * * *
2139073 TTTTAAGTCCATAACTCCTTGGCATCA
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2139100 TTTAAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2139127 TTTTAAGTCCACAACTCTGTGGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
2139154 TTTTAAGTCCACAACTCTGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
2139181 TTTTAAAGTCCACAACTCCGTGGTACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
* * * *
2139209 TTTTAAATCCACAACTCCGTGGTATCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
2139236 TTTTAAGTCCACAACTCCGTGGCACC
1 TTTTAAGTCCACAACTCCGTGGCACC
2139262 TTTCAAAGCC
Statistics
Matches: 292, Mismatches: 31, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
27 214 0.73
28 78 0.27
ACGTcount: A:0.24, C:0.32, G:0.14, T:0.30
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:2139021 original size:82 final size:82
Alignment explanation
Indices: 2138878--2139321 Score: 518
Period size: 82 Copynumber: 5.4 Consensus size: 82
2138868 ATTGTGACAT
* * * * *
2138878 TTTTAAAGTCCACGACTCAGTGGCATTTCTTTTTAAAGTCCACAACTCCGTAGCATCCTTTTAAG
1 TTTTAAAGTCCACAACTCCGTGGCA--CCTTTTT-AAGTCCACAACTCCGTGGCACCCTTTTAAG
*
2138943 TCCACAACTCCGTGGCATCC
63 TCCACAACTCCGTGGCACCC
* *
2138963 TTGTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* *
2139028 ACAACTTCGTGGCACTC
66 ACAACTCCGTGGCACCC
* * * * * *
2139045 TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCATAACTCCTTGGCATCATTTAAAGTCC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
*
2139110 ACAACTCTGTGGCACCC
66 ACAACTCCGTGGCACCC
* * *
2139127 TTTT-AAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACTCTTTTAAAGTC
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTT-AAGTC
*
2139191 CACAACTCCGTGGTACCC
65 CACAACTCCGTGGCACCC
* * *
2139209 TTTTAAA-TCCACAACTCCGTGGTATCTTTTTAAGTCCACAACTCCGTGGCA-CCTTTCAAAG-C
1 TTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTC
* * *
2139271 CTACAAGTCAGTGGCATCC
65 C-ACAACTCCGTGGCACCC
* * * *
2139290 TTTTCAAAGCCCACAAGTCAGTGGCATCTTTT
1 TTTT-AAAGTCCACAACTCCGTGGCACCTTTT
2139322 CAAAGCCCAC
Statistics
Matches: 309, Mismatches: 44, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
80 2 0.01
81 69 0.22
82 190 0.61
83 26 0.08
85 22 0.07
ACGTcount: A:0.25, C:0.31, G:0.15, T:0.30
Consensus pattern (82 bp):
TTTTAAAGTCCACAACTCCGTGGCACCTTTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
ACAACTCCGTGGCACCC
Found at i:2139083 original size:109 final size:108
Alignment explanation
Indices: 2138908--2139293 Score: 497
Period size: 109 Copynumber: 3.5 Consensus size: 108
2138898 TGGCATTTCT
* * *
2138908 TTTTAAAGTCCACAACTCCGTAGCATCCTTTT-AAGTCCACAACTCCGTGGCATCCTTGTAAAGT
1 TTTT-AAGTCCACAACTCCGTGGCA-CCTTTTAAAGTCCACAACTCCGTGGCACCCTT-TTAAGT
2138972 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
63 CCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
*
2139018 TTTTAAGTCCACAACTTCGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCAC-CTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
* * * * * *
2139083 ATAACTCCTTGGCATCATTTAAAGTCCACAACTCTGTGGCACCC
65 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
* * * *
2139127 TTTTAAGTCCACAACTCTGTGGCACCTTTTTAAGTCCACAACTCTGTGGCACTCTTTTAAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCCACAACTCCGTGGCACCCTTTT-AAGTCC
* * * * *
2139192 ACAACTCCGTGGTACCCTTTTAAATCCACAACTCCGTGGTATCT
65 ACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
* * * *
2139236 TTTTAAGTCCACAACTCCGTGGCACCTTTCAAAG-CCTACAAGTCAGTGGCATCCTTTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCC-ACAACTCCGTGGCACCCTTTT
2139294 CAAAGCCCAC
Statistics
Matches: 239, Mismatches: 33, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
108 33 0.14
109 178 0.74
110 28 0.12
ACGTcount: A:0.24, C:0.31, G:0.14, T:0.30
Consensus pattern (108 bp):
TTTTAAGTCCACAACTCCGTGGCACCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCA
CAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCC
Found at i:2139158 original size:136 final size:136
Alignment explanation
Indices: 2138877--2139383 Score: 590
Period size: 136 Copynumber: 3.7 Consensus size: 136
2138867 CATTGTGACA
* * * *
2138877 TTTTTAAAGTCCACGACTCAGTGGCATTTCTTTTTAAAGTCCACAACTCCGTAGCATCCTTTTAA
1 TTTTT-AAGTCCACAACTCAGTGGCA-CTC-TTTTAAAGTCCACAACTCCGTGGCACCCTTTTAA
*
2138942 GTCCACAACTCCGTGGCATCCTTGTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACT
63 GTCCACAACTCCGTGGCATCATT-TAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACT
2139007 CCGTGGCACC
127 CCGTGGCACC
*
2139017 CTTTTAAGTCCACAACTTC-GTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
1 TTTTTAAGTCCACAAC-TCAGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGT
* * * *
2139081 CCATAACTCCTTGGCATCATTTAAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCTG
65 CCACAACTCCGTGGCATCATTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCG
2139146 TGGCACC
130 TGGCACC
* * *
2139153 TTTTTAAGTCCACAACTCTGTGGCACTCTTTTAAAGTCCACAACTCCGTGGTACCCTTTTAAATC
1 TTTTTAAGTCCACAACTCAGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
* * * * * *
2139218 CACAACTCCGTGGTATCTTTTTAAGTCCACAACTCCGTGGCA-CCTTTCAAAG-CCTACAAGTCA
66 CACAACTCCGTGGCATCATTTAAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCC-ACAACTCC
2139281 GTGGCATCC
129 GTGGCA-CC
* * * * * ** *
2139290 TTTTCAAAGCCCACAAGTCAGTGGCA-TCTTTTCAAAGCCCACAAGTGAGTGGCATCCTTTTCAA
1 TTTT-TAAGTCCACAACTCAGTGGCACTCTTTT-AAAGTCCACAACTCCGTGGCACCCTTTT--A
* * * *
2139354 AGCCCACAAGTCAGTGGCATCTTTTCAAAG
62 AGTCCACAACTCCGTGGCATCATTT-AAAG
2139384 CCCAAAAGTT
Statistics
Matches: 319, Mismatches: 38, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
135 9 0.03
136 159 0.50
137 64 0.20
138 41 0.13
139 16 0.05
140 27 0.08
141 3 0.01
ACGTcount: A:0.25, C:0.30, G:0.15, T:0.29
Consensus pattern (136 bp):
TTTTTAAGTCCACAACTCAGTGGCACTCTTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
CACAACTCCGTGGCATCATTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCGT
GGCACC
Found at i:2139276 original size:27 final size:28
Alignment explanation
Indices: 2138894--2140217 Score: 1017
Period size: 28 Copynumber: 46.9 Consensus size: 28
2138884 AGTCCACGAC
* * * *
2138894 TCAGTGGCATTTCTTTTTAAAGTCCACAAC
1 TCAGTGGCA--TCCTTTCAAAGCCCACAAG
* * * * *
2138924 TCCGTAGCATCCTTT-TAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * *
2138951 TCCGTGGCATCCTTGT-AAAGTCCACAAC
1 TCAGTGGCATCCTT-TCAAAGCCCACAAG
* * * * *
2138979 TCCGTGGCACCCTTT-TAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * * * *
2139006 TCCGTGGCACCCTTT-TAAGTCCACAACT
1 TCAGTGGCATCCTTTCAAAGCCCACAA-G
* * *
2139034 TC-GTGGCA-CTCTTTTAAAGTCCACAAC
1 TCAGTGGCATC-CTTTCAAAGCCCACAAG
* * * * * *
2139061 TCCGTGGCACCCTTT-TAAGTCCATAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
** * * *
2139088 TCCTTGGCATCATTT-AAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * * * *
2139115 TCTGTGGCACCCTTT-TAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* ** * *
2139142 TCTGTGGCA-CCTTTTTAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * * *
2139169 TCTGTGGCA-CTCTTTTAAAGTCCACAAC
1 TCAGTGGCATC-CTTTCAAAGCCCACAAG
* * * * * *
2139197 TCCGTGGTACCCTTTTAAA-TCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * ** * *
2139224 TCCGTGGTAT-CTTTTTAAGTCCACAAC
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139251 TCCGTGGCA-CCTTTCAAAGCCTACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
2139278 TCAGTGGCATCCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCC-TTTCAAAGCCCACAAG
*
2139307 TCAGTGGCATCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
*
2139335 TGAGTGGCATCCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCC-TTTCAAAGCCCACAAG
* *
2139364 TCAGTGGCATCTTTTCAAAGCCCAAAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139392 TTAGTGACATCCTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
2139420 TCAGTGGCATCCTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * **
2139448 TTAGTGGCAT-ATTTCCAAAGCTAACAAG
1 TCAGTGGCATCCTTT-CAAAGCCCACAAG
* * *
2139476 TCAGTAGTATCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * * *
2139504 TTAGTGACATCATTTTAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * **
2139532 TTAGTGGTATCCTTTCAAAGCTTACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * *
2139560 TCAGTGGCACCCTTTTAAAGCCAACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139588 TCAGTAGCAT-CTTTCAAAGCCTACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
*
2139615 TCAGTGGCATCCTTTCAAAGCCCACAAA
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139643 TCAGTGGCATCCTTTTAAAGCCCCCAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * *
2139671 TTAGTGGCATCTTTTCAAAACCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
**
2139699 TCAGTGGCATTTTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139727 TTAGTGGCATCATTTCAAAGCCTACACAAG
1 TCAGTGGCATCCTTTCAAAGCC--CACAAG
** *
2139757 TTTGTGGCATCATTTCAAAGCCCACACAAG
1 TCAGTGGCATCCTTTCAAAG-CC-CACAAG
* **
2139787 TCGGTGGCAACTTATTTCAAAGCCCACACAAG
1 TCAGTGGC-A-TCCTTTCAAAG-CC-CACAAG
** *
2139819 TTGGTGGCAATCTATTTCAAAGCCCACACAAG
1 TCAGTGGC-ATC-CTTTCAAAG-CC-CACAAG
** *
2139851 TTGGTGGCAACCCATTTCAAAGCCCACACAAG
1 TCAGTGGC-ATCC-TTTCAAAG-CC-CACAAG
*
2139883 TCAGTGACA-CCTTTTCAAAGCCCACAAG
1 TCAGTGGCATCC-TTTCAAAGCCCACAAG
* * * *
2139911 TCAGTGACATCCTTTCAAAGTCTATAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * *
2139939 TCGGTGGCATCTTTTCAAACCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2139967 TTAGTGGCACCCTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
**
2139995 TCAGTGGCACTTTTTTCAAAGCCCACAAG
1 TCAGTGGCA-TCCTTTCAAAGCCCACAAG
*
2140024 TCAGTGGCACCCTTTCAAAGCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2140052 TCAGTGGCACCCTTTCAAAGCCAACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
*
2140080 TCAGTGGCACTCTTTTCAAAGCCCACAAG
1 TCAGTGGCA-TCCTTTCAAAGCCCACAAG
* * *
2140109 TCAGTGGCATCTTTTCAAAGCTCATAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* * * *
2140137 TTAGTGTCACCCTTTCAAATCCCACAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2140165 TCAGTGGCACCCTTTCAAAGCCCATAAG
1 TCAGTGGCATCCTTTCAAAGCCCACAAG
* *
2140193 TTAGTGGCACTCTTTTCAAAGCCCA
1 TCAGTGGCA-TCCTTTCAAAGCCCA
2140218 TAAGCTAGTG
Statistics
Matches: 1115, Mismatches: 151, Indels: 57
0.84 0.11 0.04
Matches are distributed among these distances:
26 13 0.01
27 239 0.21
28 597 0.54
29 124 0.11
30 55 0.05
31 5 0.00
32 82 0.07
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (28 bp):
TCAGTGGCATCCTTTCAAAGCCCACAAG
Found at i:2139386 original size:28 final size:28
Alignment explanation
Indices: 2139092--2140274 Score: 1019
Period size: 28 Copynumber: 41.5 Consensus size: 28
2139082 CATAACTCCT
* * * *
2139092 TGGCATCATTT-AAAGTCCACAACTCTG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * * *
2139119 TGGCACCCTTTT--AAGTCCACAACTCTG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* * * * *
2139146 TGGCACCTTTT-TAAGTCCACAACTCTG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * *
2139173 TGGCACTCTTTT-AAAGTCCACAACTCCG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* * * * *
2139201 TGGTACCCTTTT-AAA-TCCACAACTCCG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* * * * *
2139228 TGGTATCTTTT-TAAGTCCACAACTCCG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139255 TGGCA-CCTTTCAAAGCCTACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
2139282 TGGCATCCTTTTCAAAGCCCACAAGTCAG
1 TGGCAT-CTTTTCAAAGCCCACAAGTCAG
*
2139311 TGGCATCTTTTCAAAGCCCACAAGTGAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
2139339 TGGCATCCTTTTCAAAGCCCACAAGTCAG
1 TGGCAT-CTTTTCAAAGCCCACAAGTCAG
* *
2139368 TGGCATCTTTTCAAAGCCCAAAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139396 TGACATCCTTTCAAAGCCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139424 TGGCATCCTTTCAAAGCCCACAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * **
2139452 TGGCATATTTCCAAAGCTAACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * *
2139480 TAGTATCTTTTCAAAGCCCACAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139508 TGACATCATTTT-AAAGCCCACAAGTTAG
1 TGGCATC-TTTTCAAAGCCCACAAGTCAG
* * **
2139536 TGGTATCCTTTCAAAGCTTACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139564 TGGCACCCTTTT-AAAGCCAACAAGTCAG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* *
2139592 TAGCATC-TTTCAAAGCCTACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139619 TGGCATCCTTTCAAAGCCCACAAATCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139647 TGGCATCCTTTT-AAAGCCCCCAAGTTAG
1 TGGCAT-CTTTTCAAAGCCCACAAGTCAG
*
2139675 TGGCATCTTTTCAAAACCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139703 TGGCATTTTTTCAAAGCCCACAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* **
2139731 TGGCATCATTTCAAAGCCTACACAAGTTTG
1 TGGCATCTTTTCAAAGCC--CACAAGTCAG
* *
2139761 TGGCATCATTTCAAAGCCCACACAAGTCGG
1 TGGCATCTTTTCAAAG-CC-CACAAGTCAG
* **
2139791 TGGCAACTTATTTCAAAGCCCACACAAGTTGG
1 TGGCATC-T-TTTCAAAG-CC-CACAAGTCAG
**
2139823 TGGCAATCTATTTCAAAGCCCACACAAGTTGG
1 TGGC-ATCT-TTTCAAAG-CC-CACAAGTCAG
* *
2139855 TGGCAACCCATTTCAAAGCCCACACAAGTCAG
1 TGGC-A-TCTTTTCAAAG-CC-CACAAGTCAG
* *
2139887 TGACACCTTTTCAAAGCCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * * * * *
2139915 TGACATCCTTTCAAAGTCTATAAGTCGG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139943 TGGCATCTTTTCAAACCCCACAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* *
2139971 TGGCACCCTTTCAAAGCCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
*
2139999 TGGCACTTTTTTCAAAGCCCACAAGTCAG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* *
2140028 TGGCACCCTTTCAAAGCCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * *
2140056 TGGCACCCTTTCAAAGCCAACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
2140084 TGGCACTCTTTTCAAAGCCCACAAGTCAG
1 TGGCA-TCTTTTCAAAGCCCACAAGTCAG
* * *
2140113 TGGCATCTTTTCAAAGCTCATAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * * *
2140141 TGTCACCCTTTCAAATCCCACAAGTCAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
* * * *
2140169 TGGCACCCTTTCAAAGCCCATAAGTTAG
1 TGGCATCTTTTCAAAGCCCACAAGTCAG
*
2140197 TGGCACTCTTTTCAAAGCCCATAAG-CTAG
1 TGGCA-TCTTTTCAAAGCCCACAAGTC-AG
* *
2140226 TGGTAACTCTTTTAAAAGCCCACGCAAGTC-G
1 TGG-CA-TCTTTTCAAAGCCCA--CAAGTCAG
2140257 ATGGCAATCCTTTTCAAA
1 -TGGC-AT-CTTTTCAAA
2140275 TCACTACTTT
Statistics
Matches: 987, Mismatches: 136, Indels: 61
0.83 0.11 0.05
Matches are distributed among these distances:
26 20 0.02
27 124 0.13
28 536 0.54
29 139 0.14
30 66 0.07
31 5 0.01
32 93 0.09
33 4 0.00
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCATCTTTTCAAAGCCCACAAGTCAG
Found at i:2145575 original size:20 final size:20
Alignment explanation
Indices: 2145550--2145587 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
2145540 ACTACCAAGG
2145550 AAATGTATCGATACATTGAT
1 AAATGTATCGATACATTGAT
2145570 AAATGTATCGATACATTG
1 AAATGTATCGATACATTG
2145588 TATCGATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (20 bp):
AAATGTATCGATACATTGAT
Found at i:2145591 original size:13 final size:13
Alignment explanation
Indices: 2145573--2145603 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
2145563 CATTGATAAA
2145573 TGTATCGATACAT
1 TGTATCGATACAT
2145586 TGTATCGATACAT
1 TGTATCGATACAT
2145599 T-TATC
1 TGTATC
2145604 ATTGTATCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 4 0.22
13 14 0.78
ACGTcount: A:0.29, C:0.16, G:0.13, T:0.42
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2145595 original size:33 final size:33
Alignment explanation
Indices: 2145553--2145619 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
2145543 ACCAAGGAAA
2145553 TGTATCGATACATTGATAAATGTATCGATACAT
1 TGTATCGATACATTGATAAATGTATCGATACAT
* * *
2145586 TGTATCGATACATTTATCATTGTATCGATACAT
1 TGTATCGATACATTGATAAATGTATCGATACAT
2145619 T
1 T
2145620 TGGATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATTGATAAATGTATCGATACAT
Found at i:2145606 original size:20 final size:20
Alignment explanation
Indices: 2145583--2145620 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
2145573 TGTATCGATA
2145583 CATTGTATCGATACATTTAT
1 CATTGTATCGATACATTTAT
2145603 CATTGTATCGATACATTT
1 CATTGTATCGATACATTT
2145621 GGATTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.45
Consensus pattern (20 bp):
CATTGTATCGATACATTTAT
Found at i:2145664 original size:20 final size:20
Alignment explanation
Indices: 2145634--2145688 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
2145624 TTTTTTACCA
2145634 AATGTATCGATACATTGA-TC
1 AATGTATCGATACATT-ATTC
* *
2145654 ATTGTAACGATACATTATTC
1 AATGTATCGATACATTATTC
2145674 AATGTATCGATACAT
1 AATGTATCGATACAT
2145689 GCAGGTAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
19 1 0.03
20 29 0.97
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (20 bp):
AATGTATCGATACATTATTC
Found at i:2150618 original size:13 final size:13
Alignment explanation
Indices: 2150600--2150625 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2150590 CAATTTTTTG
2150600 TGTATCGATACAT
1 TGTATCGATACAT
2150613 TGTATCGATACAT
1 TGTATCGATACAT
2150626 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2150637 original size:32 final size:33
Alignment explanation
Indices: 2150580--2150643 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2150570 TACAAGCCAA
**
2150580 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2150613 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2150644 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2151039 original size:21 final size:20
Alignment explanation
Indices: 2151010--2151052 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
2151000 GGCTAGTATG
*
2151010 GGGACTGCCCGGTTGCGACCT
1 GGGACTG-CCGGTCGCGACCT
*
2151031 GGGAGTGCCGGTCGCGACCT
1 GGGACTGCCGGTCGCGACCT
2151051 GG
1 GG
2151053 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.30, G:0.44, T:0.16
Consensus pattern (20 bp):
GGGACTGCCGGTCGCGACCT
Found at i:2151511 original size:13 final size:13
Alignment explanation
Indices: 2151493--2151530 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
2151483 ATAATCCCCC
2151493 TGTATCGATACAG
1 TGTATCGATACAG
*
2151506 TGTATCGATACAT
1 TGTATCGATACAG
*
2151519 TGTATCAATACA
1 TGTATCGATACA
2151531 AAGAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:2157708 original size:13 final size:13
Alignment explanation
Indices: 2157690--2157715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2157680 CAATTTTTTG
2157690 TGTATCGATACAT
1 TGTATCGATACAT
2157703 TGTATCGATACAT
1 TGTATCGATACAT
2157716 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2157727 original size:32 final size:33
Alignment explanation
Indices: 2157670--2157733 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
2157660 TACAAGCCAA
**
2157670 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
2157703 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
2157734 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:2160749 original size:25 final size:25
Alignment explanation
Indices: 2160644--2160770 Score: 227
Period size: 26 Copynumber: 5.0 Consensus size: 25
2160634 AAAACATGAA
2160644 CAGCATGGGAAAGGAAATAGAAAATG
1 CAGCATGGGAAAGGAAATA-AAAATG
2160670 CAGCATGGGAAAGGAAATAGAAAATG
1 CAGCATGGGAAAGGAAATA-AAAATG
2160696 CAGCATGGGAAAGGAAATAAAAAATG
1 CAGCATGGGAAAGGAAAT-AAAAATG
2160722 CAGCATGGGAAAGGAAATAAAAATG
1 CAGCATGGGAAAGGAAATAAAAATG
2160747 CAGCATGGGAAAGGAAATAAAAAT
1 CAGCATGGGAAAGGAAATAAAAAT
2160771 TGCAATTGGA
Statistics
Matches: 100, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
25 31 0.31
26 68 0.68
27 1 0.01
ACGTcount: A:0.52, C:0.08, G:0.28, T:0.12
Consensus pattern (25 bp):
CAGCATGGGAAAGGAAATAAAAATG
Found at i:2161157 original size:43 final size:42
Alignment explanation
Indices: 2161096--2161231 Score: 182
Period size: 43 Copynumber: 3.2 Consensus size: 42
2161086 GCAGCTCCAG
* * * * * *
2161096 CAGCAGCACCAGCTCCAGCGGTGGCGACAGCTCTAGCACGCAA
1 CAGCAGCAGCAACTCCAGCAGCGACG-CAGCTCCAGCACGCAA
2161139 CAGCAGCAGCAACTCCAGCAGCGACTGCAGCTCCAGCACGCAA
1 CAGCAGCAGCAACTCCAGCAGCGAC-GCAGCTCCAGCACGCAA
*
2161182 CAGCAGCAGCAACTCCAGCAGCGATTGCAGCTCCAGCACGCAA
1 CAGCAGCAGCAACTCCAGCAGCGA-CGCAGCTCCAGCACGCAA
2161225 CAGCAGC
1 CAGCAGC
2161232 TCCAGCGAGA
Statistics
Matches: 84, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
43 83 0.99
44 1 0.01
ACGTcount: A:0.29, C:0.38, G:0.25, T:0.08
Consensus pattern (42 bp):
CAGCAGCAGCAACTCCAGCAGCGACGCAGCTCCAGCACGCAA
Found at i:2161246 original size:43 final size:43
Alignment explanation
Indices: 2161123--2161231 Score: 200
Period size: 43 Copynumber: 2.5 Consensus size: 43
2161113 GCGGTGGCGA
*
2161123 CAGCTCTAGCACGCAACAGCAGCAGCAACTCCAGCAGCGACTG
1 CAGCTCCAGCACGCAACAGCAGCAGCAACTCCAGCAGCGACTG
*
2161166 CAGCTCCAGCACGCAACAGCAGCAGCAACTCCAGCAGCGATTG
1 CAGCTCCAGCACGCAACAGCAGCAGCAACTCCAGCAGCGACTG
2161209 CAGCTCCAGCACGCAACAGCAGC
1 CAGCTCCAGCACGCAACAGCAGC
2161232 TCCAGCGAGA
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.30, C:0.39, G:0.23, T:0.08
Consensus pattern (43 bp):
CAGCTCCAGCACGCAACAGCAGCAGCAACTCCAGCAGCGACTG
Found at i:2162469 original size:51 final size:50
Alignment explanation
Indices: 2162382--2162878 Score: 325
Period size: 51 Copynumber: 9.5 Consensus size: 50
2162372 CAAAATATTG
* * *
2162382 ATTTCTCATAATGGGGGATACTCCAACCCCGCTTTTATTTCTAAAACACTA
1 ATTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
* * *
2162433 ATTTTCCATAATCGTGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAA
1 A-TTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACC-A
* * * *
2162486 ATTTCCTTTAATCGGGGATACTCTAACCTCGGTTTTATTT-TAAAAACACCA
1 ATTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCA
* * * * * * **** * *
2162537 ATCTTTCACAATCGAGGATATTCCAACCTCGTTATTTCATTGGGGATACTCCA
1 AT-TTCCATAATCGGGGATACTCCAACCCCG--ATTTTATTTCTAAAACACCA
** * ** * * ***
2162590 A-CCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTG
1 ATTTCCA-TA-AT-C--GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
* * * * *
2162644 ATTTCTCTTAATGGGGGATACTCCAACCCCGGTTTCATTTCTAAAACACTA
1 ATTTC-CATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
* * *
2162695 ACTTTCCATAATCGGGGATACTCTAACCCCGATTTTATTTTTCGAAACACCAA
1 A-TTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACC-A
* *
2162748 ATTTCCTTTAATCGGGGATACTCCAACCCCGGTTTTATTT-TCAAAACACCA
1 ATTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCA
* * * *
2162799 ATTTCCTTTAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACACCA
1 ATTTCC-ATAATCGGGGATACTCCAACCCCGATTTTATTT-CTAAAACACCA
* * *
2162851 ATTTTTCACAATCGAGGATACTCCAACC
1 A-TTTCCATAATCGGGGATACTCCAACC
2162879 TCGTTATTTC
Statistics
Matches: 347, Mismatches: 77, Indels: 43
0.74 0.16 0.09
Matches are distributed among these distances:
51 157 0.45
52 80 0.23
53 81 0.23
54 10 0.03
55 3 0.01
56 16 0.05
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (50 bp):
ATTTCCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCA
Found at i:2162524 original size:104 final size:102
Alignment explanation
Indices: 2162390--2162878 Score: 360
Period size: 104 Copynumber: 4.7 Consensus size: 102
2162380 TGATTTCTCA
* * * *
2162390 TAATGGGGGATACTCCAACCCCGCTTTTATTTCTAAAACACTAATTTTCCATAATCGTGGATACT
1 TAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGAGGATACT
* *
2162455 CTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTT
66 CCAACCCCGATTTCA-TTTTCAAAACACC-AATTTCCTT
* * * *
2162494 TAATCGGGGATACTCTAACCTCGGTTTTATTT-TAAAAACACCAATCTTT-CACAATCGAGGATA
1 TAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAAT-TTTCCATAATCGAGGATA
* * **** * * ** *
2162557 TTCCAACCTCGTTATTTCATTGGGGATACTCCAA-CCCCAT
64 CTCCAACCCCG--ATTTCATTTTCAAAACACCAATTTCCTT
* ** * * *** * * *
2162597 TACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGA-TTTCTCTTAATGGGGG
1 TA-AT-C--GGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTC-CATAATCGAGG
* * *
2162661 ATACTCCAACCCCGGTTTCA-TTTCTAAAACACTAACTTTCC-A
61 ATACTCCAACCCCGATTTCATTTTC-AAAACACCAA-TTTCCTT
* * * * * *
2162703 TAATCGGGGATACTCTAACCCCGATTTTATTTTTCGAAACACCAAATTTCCTTTAATCGGGGATA
1 TAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAATTTTCC-ATAATCGAGGATA
* *
2162768 CTCCAACCCCGGTTTTATTTTCAAAACACCAATTTCCTT
64 CTCCAACCCCGATTTCATTTTCAAAACACCAATTTCCTT
* * * * *
2162807 TAATCGGGGATACTCCAACTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATAC
1 TAATCGGGGATACTCCAACCCCGATTTTATTT-CTAAAACACCAATTTTCCATAATCGAGGATAC
2162872 TCCAACC
65 TCCAACC
2162879 TCGTTATTTC
Statistics
Matches: 293, Mismatches: 72, Indels: 41
0.72 0.18 0.10
Matches are distributed among these distances:
102 24 0.08
103 35 0.12
104 146 0.50
105 30 0.10
106 7 0.02
107 51 0.17
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.33
Consensus pattern (102 bp):
TAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAATTTTCCATAATCGAGGATACT
CCAACCCCGATTTCATTTTCAAAACACCAATTTCCTT
Found at i:2162731 original size:262 final size:257
Alignment explanation
Indices: 2162182--2162800 Score: 967
Period size: 262 Copynumber: 2.4 Consensus size: 257
2162172 CTCAATTGCT
* *
2162182 CATAATCGGGGATACTCCAACCCCGGTTTTATTTTT-AAAACA-CAAATTTCCTTTAATCGGGGA
1 CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
* * * * *
2162245 TACTCCAA-CTCCGATTTTGTTTCCAAAAAACACTAATTTTTCACAATCGAGGATACTTCAACCT
66 TACTCCAACCT-CGGTTTTATTT--TAAAAACACCAATCTTTCACAATCGAGGATACTTCAACCT
*
2162309 CGTTATTTCATCGGGGATACTCCAACCCCGTTACCTCCGAGGGGATACTCCAACCCCGGCTTCCA
128 CGTTATTTCATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTCCA
* *
2162374 AAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGCTTTTATTTCTAAAACACTAATTTTC
193 AAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGCTTTCATTTCTAAAACACTAACTTTC
*
2162439 CATAATCGTGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
1 CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
*
2162504 TACTCTAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATA-TTCCAACCTCG
66 TACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATACTT-CAACCTCG
*
2162568 TTATTTCATTGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTT
130 TTATTTCATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGC-----TT
* *
2162633 CCAAAATATTGATTTCTCTTAATGGGGGATACTCCAACCCCGGTTTCATTTCTAAAACACTAACT
190 CCAAAATATTGATTTCTCATAATGGGGGATACTCCAACCCCGCTTTCATTTCTAAAACACTAACT
2162698 TTC
255 TTC
*
2162701 CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCGAAACACCAAATTTCCTTTAATCGGGGA
1 CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
* *
2162766 TACTCCAACCCCGGTTTTATTTTCAAAACACCAAT
66 TACTCCAACCTCGGTTTTATTTTAAAAACACCAAT
2162801 TTCCTTTAAT
Statistics
Matches: 333, Mismatches: 20, Indels: 13
0.91 0.05 0.04
Matches are distributed among these distances:
256 2 0.01
257 125 0.38
258 6 0.02
259 37 0.11
260 2 0.01
262 161 0.48
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.32
Consensus pattern (257 bp):
CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGA
TACTCCAACCTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATACTTCAACCTCGT
TATTTCATCGGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTCCAAAA
TATTGATTTCTCATAATGGGGGATACTCCAACCCCGCTTTCATTTCTAAAACACTAACTTTC
Found at i:2162775 original size:211 final size:211
Alignment explanation
Indices: 2162395--2162775 Score: 477
Period size: 211 Copynumber: 1.8 Consensus size: 211
2162385 TCTCATAATG
* * *
2162395 GGGGATACTCCAACCCCGCTTTTATTTCTAAAACACTAATTTTCCATAATCGTGGATACTCTAAC
1 GGGGATACTCCAACCCCGCTTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAAC
* * * * *
2162460 CCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCTAACCTCGGTTTTATT
66 CCCGATTTCATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTATT
* *
2162525 TTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCGTTATTTCATTGGGGATACTCCA
131 TTAAAAACACCAATATTTCACAATCGAGGATACTCCAACCTCGTTATTTCATTGGGGATACTCCA
2162590 ACCCCATTACCTCCGA
196 ACCCCATTACCTCCGA
* * * * *
2162606 GGGGATACTCCAACCCCGGC-TTTATTTCCAAAATATTGA-TTTCTCTTAATGGGGGATACTCCA
1 GGGGATACTCCAACCCC-GCTTTTATTTCCAAAACACTAATTTTC-CATAATCGGGGATACTCCA
* * *
2162669 ACCCCGGTTTCATTTCT-AAAACACTAACTTTCC-ATAATCGGGGATACTCTAACCCCGATTTTA
64 ACCCCGATTTCATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTA
** *
2162732 TTTTTCGAAACACCAA-ATTTC-CTTTAATCGGGGATACTCCAACC
129 -TTTTAAAAACACCAATATTTCAC---AATCGAGGATACTCCAACC
2162776 CCGGTTTTAT
Statistics
Matches: 143, Mismatches: 21, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
208 1 0.01
209 31 0.22
210 31 0.22
211 78 0.55
212 2 0.01
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (211 bp):
GGGGATACTCCAACCCCGCTTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAAC
CCCGATTTCATTTCTCAAAACACCAAATTTCCTATAATCGGGGATACTCTAACCCCGATTTTATT
TTAAAAACACCAATATTTCACAATCGAGGATACTCCAACCTCGTTATTTCATTGGGGATACTCCA
ACCCCATTACCTCCGA
Found at i:2162898 original size:314 final size:314
Alignment explanation
Indices: 2162383--2162988 Score: 950
Period size: 314 Copynumber: 1.9 Consensus size: 314
2162373 AAAATATTGA
* * * * *
2162383 TTTCTCATAATGGGGGATACTCCAACCCCGCTTTTATTTCTAAAACACTAATTTTCCATAATCGT
1 TTTCTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAAATTTCCATAATCGG
* *
2162448 GGATACTCTAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCTAAC
66 GGATACTCCAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAAC
* * * *
2162513 CTCGGTTTTATTTTAAAAACACCAATCTTTCACAATCGAGGATATTCCAACCTCGTTATTTCATT
131 CTCGATTTTATTTCAAAAACACCAATCTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATC
*
2162578 GGGGATACTCCAACCCCATTACCTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATT
196 GGGGATACTCCAACCCCATTACCTCCAAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATT
*
2162643 GATTTCTCTTAATGGGGGATACTCCAACCCCGGTTTCATTTCTAAAACACTAAC
261 GATTTCTCATAATGGGGGATACTCCAACCCCGGTTTCATTTCTAAAACACTAAC
* * * *
2162697 TTTC-CATAATCGGGGATACTCTAACCCCGATTTTATTTTTCGAAACACCAAATTTCCTTTAATC
1 TTTCTCATAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACACCAAATTTCC-ATAATC
*
2162761 GGGGATACTCCAACCCCGGTTTTA-TTTTCAAAACACC-AATTTCCTTTAATCGGGGATACTCCA
64 GGGGATACTCCAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCA
*
2162824 A-CTCTGATTTTATTTCCAAAAACACCAATTTTTCACAATCGAGGATACTCCAACCTCGTTATTT
129 ACCTC-GATTTTATTT-CAAAAACACCAATCTTTCACAATCGAGGATACTCCAACCTCGTTATTT
* *
2162888 CATCGGGGATACTCCAACCCCGTTACCTCCAAGGGGATACTTCAACCCCGGCTTTATTTCCAAAA
192 CATCGGGGATACTCCAACCCCATTACCTCCAAGGGGATACTCCAACCCCGGCTTTATTTCCAAAA
*
2162953 TATTGATTTCTCATAATTGGGGATACTCCAACCCCG
257 TATTGATTTCTCATAATGGGGGATACTCCAACCCCG
2162989 TTATTTCTGA
Statistics
Matches: 266, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
312 3 0.01
313 67 0.25
314 170 0.64
315 26 0.10
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.33
Consensus pattern (314 bp):
TTTCTCATAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACACCAAATTTCCATAATCGG
GGATACTCCAACCCCGATTTTATTTTTCAAAACACCAAATTTCCTTTAATCGGGGATACTCCAAC
CTCGATTTTATTTCAAAAACACCAATCTTTCACAATCGAGGATACTCCAACCTCGTTATTTCATC
GGGGATACTCCAACCCCATTACCTCCAAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATT
GATTTCTCATAATGGGGGATACTCCAACCCCGGTTTCATTTCTAAAACACTAAC
Found at i:2162923 original size:28 final size:28
Alignment explanation
Indices: 2162866--2162937 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 28
2162856 TCACAATCGA
* * * *
2162866 GGATACTCCAACCTCGTTATTTCATCGG
1 GGATACTCCAACCCCGTTACTCCATAGG
2162894 GGATACTCCAACCCCGTTACCTCCA-AGG
1 GGATACTCCAACCCCGTTA-CTCCATAGG
*
2162922 GGATACTTCAACCCCG
1 GGATACTCCAACCCCG
2162938 GCTTTATTTC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 35 0.92
29 3 0.08
ACGTcount: A:0.24, C:0.35, G:0.18, T:0.24
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTACTCCATAGG
Found at i:2162985 original size:79 final size:78
Alignment explanation
Indices: 2162889--2163125 Score: 253
Period size: 79 Copynumber: 3.0 Consensus size: 78
2162879 TCGTTATTTC
** *
2162889 ATCGGGGATACTCCAACCCCGTTACCTCCAAGGGGATACTTCAACCCCGGCTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATAC-TCAACCCCGGTTTTATTTCCAAAAT
2162954 ATTGATTTCTCATA
65 ATTGATTTCTCATA
* ** * * *
2162968 ATTGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCTAATCCCGATTTTATTTCC-CAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTC-AACCCCGGTTTTATTTCCAAAAT
* * *
2163032 CATCGATTTTTCACA
65 -ATTGATTTCTCATA
* * * *
2163047 ATCGGGGATACTCCAACCCCATTATTTTCAAGGGGATACCCCAACCCC-GTTATTATCTCCAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATA-CTCAACCCCGGTT-TTATTTCCAAAA
*
2163111 TATTAAATTTCTCAT
64 TATT-GATTTCTCAT
2163126 CGGGACAGAT
Statistics
Matches: 126, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
78 7 0.06
79 107 0.85
80 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.32
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCAACCCCGGTTTTATTTCCAAAATA
TTGATTTCTCATA
Found at i:2172750 original size:33 final size:33
Alignment explanation
Indices: 2172713--2172779 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2172703 TTCAACGATT
2172713 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
2172746 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
2172779 T
1 T
2172780 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:2172751 original size:13 final size:13
Alignment explanation
Indices: 2172733--2172757 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2172723 CATAAAATGT
2172733 TGTATCGATACAA
1 TGTATCGATACAA
2172746 TGTATCGATACA
1 TGTATCGATACA
2172758 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2172838 original size:13 final size:13
Alignment explanation
Indices: 2172820--2172844 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2172810 ATTACTCAAA
2172820 TGTATCGATACAT
1 TGTATCGATACAT
2172833 TGTATCGATACA
1 TGTATCGATACA
2172845 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2172946 original size:52 final size:52
Alignment explanation
Indices: 2172853--2172980 Score: 215
Period size: 52 Copynumber: 2.5 Consensus size: 52
2172843 CACTGATCTT
* *
2172853 TGTATCGATACATGCAGGC-AATTTGCCCAGATGTATCGATACA-TTTTAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGAGGTATCGATACACTATT-AAA
2172904 TGTATCGATACATGCAGGCAAATTTGCCCAGAGGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGAGGTATCGATACACTATTAAA
2172956 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
2172981 TCATATTTCG
Statistics
Matches: 73, Mismatches: 2, Indels: 3
0.94 0.03 0.04
Matches are distributed among these distances:
51 19 0.26
52 51 0.70
53 3 0.04
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.30
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGAGGTATCGATACACTATTAAA
Found at i:2178412 original size:20 final size:21
Alignment explanation
Indices: 2178375--2178429 Score: 94
Period size: 20 Copynumber: 2.7 Consensus size: 21
2178365 AAATTATCCA
2178375 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
2178396 AATGTATCGAT-CATTTGTGG
1 AATGTATCGATACATTTGTAG
2178416 AATGTATCGATACA
1 AATGTATCGATACA
2178430 ATCTACAAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
20 19 0.59
21 13 0.41
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:2178510 original size:19 final size:18
Alignment explanation
Indices: 2178486--2178548 Score: 64
Period size: 19 Copynumber: 3.7 Consensus size: 18
2178476 AATTCAACAA
2178486 TTTGTATCGATACGTAAGT
1 TTTGTATCGATAC-TAAGT
2178505 TTTGTATCGATAC-AA--
1 TTTGTATCGATACTAAGT
2178520 --TGTATCGATACATAAGT
1 TTTGTATCGATAC-TAAGT
*
2178537 ATTGTATCGATA
1 TTTGTATCGATA
2178549 TATAATTAGC
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
15 2 0.05
17 2 0.05
19 23 0.61
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (18 bp):
TTTGTATCGATACTAAGT
Found at i:2178525 original size:13 final size:13
Alignment explanation
Indices: 2178507--2178531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2178497 ACGTAAGTTT
2178507 TGTATCGATACAA
1 TGTATCGATACAA
2178520 TGTATCGATACA
1 TGTATCGATACA
2178532 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:2178529 original size:32 final size:32
Alignment explanation
Indices: 2178488--2178548 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
2178478 TTCAACAATT
* *
2178488 TGTATCGATACGTAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
2178520 TGTATCGATACATAAGTATTGTATCGATA
1 TGTATCGATACATAAGTATTGTATCGATA
2178549 TATAATTAGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:2178611 original size:13 final size:13
Alignment explanation
Indices: 2178593--2178618 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2178583 CATTTTTCTG
2178593 TGTATCGATACAT
1 TGTATCGATACAT
2178606 TGTATCGATACAT
1 TGTATCGATACAT
2178619 AGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:2178615 original size:33 final size:33
Alignment explanation
Indices: 2178573--2178639 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
2178563 GCCAAGGAAA
***
2178573 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATAGATCTGTGTATCGATACAT
*
2178606 TGTATCGATACATAGATCTTTGTATCGATACAT
1 TGTATCGATACATAGATCTGTGTATCGATACAT
2178639 T
1 T
2178640 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATAGATCTGTGTATCGATACAT
Found at i:2181059 original size:51 final size:53
Alignment explanation
Indices: 2180983--2181368 Score: 206
Period size: 51 Copynumber: 7.4 Consensus size: 53
2180973 AATTCTCCAC
* * *
2180983 AATCGGGGATATTCCAACTCCGATTTTATTTTC-AAGACACTAA-TTTTCTAT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTTTTCTAT
* * * * *
2181034 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTC-AC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC-AAAAACACTAACTTTTCTAT
* * ** ** * * * *
2181087 AATCAGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATT-TTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTC--AAAAACACTAA---C-TT-TTCTAT
* * * * * *
2181144 GA--GGGGATACTCCAACCCCGACTTTA-TTTCCAAAATATTGA-TTCTTC-AT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTT-TTCTAT
* * * * * * *
2181193 AATCGGGGATACTCCAACCTCGGTTTTA-TTGCTAAAACACTAATTTTTCCAC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTTTTCTAT
* * * *
2181245 AATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTTTCCTTT
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTTTT-CTAT
* * * * * *
2181298 AATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTTC-AC
1 AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTTTTCTAT
*
2181350 AATCGAGGATACTCCAACC
1 AATCGGGGATACTCCAACC
2181369 TCGTTATCTC
Statistics
Matches: 257, Mismatches: 58, Indels: 39
0.73 0.16 0.11
Matches are distributed among these distances:
49 6 0.02
51 70 0.27
52 68 0.26
53 64 0.25
54 22 0.09
55 17 0.07
56 4 0.02
57 6 0.02
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
AATCGGGGATACTCCAACCCCGATTTTATTTTCAAAAACACTAACTTTTCTAT
Found at i:2181123 original size:27 final size:28
Alignment explanation
Indices: 2181092--2181163 Score: 101
Period size: 27 Copynumber: 2.6 Consensus size: 28
2181082 TTCACAATCA
*
2181092 GGGATACTCCAACCCCGTTAATCAT-CG
1 GGGATACTCCAACCCCGTTAATCATGAG
* **
2181119 GGGATACTCCAACCCCGTTATTTTTGAG
1 GGGATACTCCAACCCCGTTAATCATGAG
2181147 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
2181164 ACTTTATTTC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.55
28 18 0.45
ACGTcount: A:0.24, C:0.32, G:0.21, T:0.24
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTAATCATGAG
Found at i:2181325 original size:53 final size:53
Alignment explanation
Indices: 2180978--2181368 Score: 243
Period size: 52 Copynumber: 7.5 Consensus size: 53
2180968 TTCTCAATTC
* * * * * *
2180978 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTC-AAGACACTAA-TTT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
* * *
2181029 TCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCC-AAAAACACCAATTTT
* * * * *** * *
2181083 T-CACAATCAGGGATACTCCAACCCCG--TTAATCATCGGGGATACTCCAACCCCGTTATT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTAT-TTC-CAAAAACACCAA-----TT-TT
* * * * *** *
2181141 T--TTGA--GGGGATACTCCAACCCCGACTTTATTTCC-AAAATATTGATTCT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
* * * * *
2181189 T-CATAATCGGGGATACTCCAACCTCGGTTTTA-TTGCTAAAACACTAATTTT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
* * *
2181240 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTTT
1 TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
* * *
2181292 TCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTT
1 TCC-ATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
* *
2181346 T-CACAATCGAGGATACTCCAACC
1 TCCATAATCGGGGATACTCCAACC
2181369 TCGTTATCTC
Statistics
Matches: 262, Mismatches: 57, Indels: 41
0.73 0.16 0.11
Matches are distributed among these distances:
48 2 0.01
49 4 0.02
50 3 0.01
51 70 0.27
52 71 0.27
53 63 0.24
54 21 0.08
55 17 0.06
56 2 0.01
57 6 0.02
58 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (53 bp):
TCCATAATCGGGGATACTCCAACCCCGATTTTATTTCCAAAAACACCAATTTT
Found at i:2181387 original size:28 final size:27
Alignment explanation
Indices: 2181351--2181426 Score: 89
Period size: 28 Copynumber: 2.7 Consensus size: 27
2181341 ATTTTTCACA
* *
2181351 ATCGAGGATACTCCAACCTCGTTATCTC
1 ATCGGGGATACTCCAACCCCGTTA-CTC
*
2181379 ATCGGGGATACTCCAACCCCGTTACTT
1 ATCGGGGATACTCCAACCCCGTTACTC
* *
2181406 TTGAGGGGATACTCCAACCCC
1 AT-CGGGGATACTCCAACCCC
2181427 AACTTTATTC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
27 3 0.07
28 39 0.93
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.25
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTACTC
Found at i:2181446 original size:264 final size:262
Alignment explanation
Indices: 2180978--2181475 Score: 804
Period size: 264 Copynumber: 1.9 Consensus size: 262
2180968 TTCTCAATTC
* * * *
2180978 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAGACACTAATTTTCTATAATCGGGGA
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
2181043 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCAGGGATACTCCAACCCC
66 TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCAGGGATACTCCAACCCC
* * *
2181108 GTTAATCATCGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGACTTTATTT
131 GTTAATCATCGGGGATACTCCAACCCCGTTACTTTTGAGGGGATACTCCAACCCCAACTTTATTC
2181173 CCAAAATATTGA-TTCTTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAAT
196 CCAAAATATTGATTTC-TCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAAT
2181237 TTT
260 TTT
* *
2181240 TCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTTCCTTTAATCGGG
1 TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAA-TTTT-CTATAATCGGG
* *
2181305 GATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTTTTCACAATC-GAGGATACTCCAAC
64 GATACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCAG-GGATACTCCAAC
* *
2181368 CTCGTTATCTCATCGGGGATACTCCAACCCCGTTACTTTTGAGGGGATACTCCAACCCCAACTTT
128 CCCGTTA-ATCATCGGGGATACTCCAACCCCGTTACTTTTGAGGGGATACTCCAACCCCAACTTT
*
2181433 ATTCCCAAAATATTGATTTCTCATAATTGGGGATACTCCAACC
192 ATTCCCAAAATATTGATTTCTCATAATCGGGGATACTCCAACC
2181476 CCGTTATTTT
Statistics
Matches: 217, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
262 44 0.20
263 43 0.20
264 127 0.59
265 3 0.01
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (262 bp):
TCCACAATCGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTTCTATAATCGGGGA
TACTCCAACTCCGATTTTATTTCCAAAAAACACCAAATTTTCACAATCAGGGATACTCCAACCCC
GTTAATCATCGGGGATACTCCAACCCCGTTACTTTTGAGGGGATACTCCAACCCCAACTTTATTC
CCAAAATATTGATTTCTCATAATCGGGGATACTCCAACCTCGGTTTTATTGCTAAAACACTAATT
TT
Found at i:2185619 original size:13 final size:13
Alignment explanation
Indices: 2185601--2185626 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2185591 TACAGCAAGT
2185601 ATGTATCGATACA
1 ATGTATCGATACA
2185614 ATGTATCGATACA
1 ATGTATCGATACA
2185627 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2188478 original size:79 final size:79
Alignment explanation
Indices: 2188347--2188818 Score: 795
Period size: 79 Copynumber: 6.0 Consensus size: 79
2188337 TTTTGGAGAT
* * *
2188347 AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
2188412 AGTATCCCCTCGAA
66 AGTATCCCCTCGAA
*
2188426 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAAAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
2188491 AGTATCCCCTCGAA
66 AGTATCCCCTCGAA
*
2188505 AATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAA-AAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
2188569 AGTATCCCCTCGAA
66 AGTATCCCCTCGAA
** *
2188583 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
2188648 AGTATCCCCTC-AGA
66 AGTATCCCCTCGA-A
* * * *
2188662 AATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
*
2188727 AGTATCCCCTCGGA
66 AGTATCCCCTCGAA
*
2188741 AATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
2188806 AGTATCCCCTCGA
66 AGTATCCCCTCGA
2188819 TTAAAGGAAA
Statistics
Matches: 370, Mismatches: 20, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
78 75 0.20
79 295 0.80
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (79 bp):
AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAGAAATAAAACCGGGGTTGG
AGTATCCCCTCGAA
Found at i:2188592 original size:28 final size:29
Alignment explanation
Indices: 2188551--2188605 Score: 94
Period size: 28 Copynumber: 1.9 Consensus size: 29
2188541 TAATATTTTA
2188551 GAAAAAAACCGGGGTTGGAGTATCCCCTC
1 GAAAAAAACCGGGGTTGGAGTATCCCCTC
*
2188580 GAAAATAA-CGGGGTTGGAGTATCCCC
1 GAAAAAAACCGGGGTTGGAGTATCCCC
2188606 GATTATGAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 18 0.72
29 7 0.28
ACGTcount: A:0.31, C:0.22, G:0.29, T:0.18
Consensus pattern (29 bp):
GAAAAAAACCGGGGTTGGAGTATCCCCTC
Found at i:2188634 original size:157 final size:159
Alignment explanation
Indices: 2188342--2188818 Score: 816
Period size: 157 Copynumber: 3.0 Consensus size: 159
2188332 TAATATTTTG
*
2188342 GAGATAATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGG
1 GAGA-AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGG
2188407 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTA
65 GTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTA
*
2188472 AAAATAAAACCGGGGTTGGAGTATCCCCTC
130 GAAATAAAACCGGGGTTGGAGTATCCCCTC
* * *
2188502 GA-AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAGAAA-AAAACCGGGG
1 GAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGG
** *
2188565 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAG
66 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAG
2188630 AAATAAAACCGGGGTTGGAGTATCCCCTC
131 AAATAAAACCGGGGTTGGAGTATCCCCTC
* *
2188659 -AGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAGCCGGGG
1 GAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGG
* *
2188723 TTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAATATTTTAG
66 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAG
2188788 AAATAAAACCGGGGTTGGAGTATCCCCTC
131 AAATAAAACCGGGGTTGGAGTATCCCCTC
2188817 GA
1 GA
2188819 TTAAAGGAAA
Statistics
Matches: 296, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
156 1 0.00
157 147 0.50
158 144 0.49
159 2 0.01
160 2 0.01
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (159 bp):
GAGAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGG
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAG
AAATAAAACCGGGGTTGGAGTATCCCCTC
Found at i:2188760 original size:236 final size:237
Alignment explanation
Indices: 2188347--2188818 Score: 849
Period size: 236 Copynumber: 2.0 Consensus size: 237
2188337 TTTTGGAGAT
2188347 AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
*
2188412 AGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTAATATTTTAAAAAT
66 AGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATATTTTAAAAAT
2188477 AAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATT
131 AAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATT
2188542 AATATTTTAGAAA-AAAACCGGGGTTGGAGTATCCCCTCGAA
196 AATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAA
* *
2188583 AATAACGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAGAAATAAAACCGGGGTTGG
1 AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
* * *
2188648 AGTATCCCCTC-AGAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAA
66 AGTATCCCCTCGA-AAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATATTTTAAAAA
* *
2188712 TAAAGCCGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAAT
130 TAAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAAT
2188777 TAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
195 TAATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGA
2188819 TTAAAGGAAA
Statistics
Matches: 226, Mismatches: 8, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
235 1 0.00
236 198 0.88
237 27 0.12
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (237 bp):
AATAACGGGGTTAGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGG
AGTATCCCCTCGAAAATAACGGGATTGGAGTATCCCCGATTATGAAAAATTAATATTTTAAAAAT
AAAACCGGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATT
AATATTTTAGAAATAAAACCGGGGTTGGAGTATCCCCTCGAA
Found at i:2188812 original size:51 final size:51
Alignment explanation
Indices: 2188746--2188871 Score: 150
Period size: 53 Copynumber: 2.4 Consensus size: 51
2188736 TCGGAAATAA
*
2188746 CGGGGTTGGAGTATCCCCGATTGTGAA-AAATTAATATTTT-AGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATT-TAAAGAAATTAATATTTTGA-AAATAAAAC
** *
2188797 CGGGGTTGGAGTATCCCCTCGA-TTAAAGGAAATTGGTGTTTTGAAAATAAAAC
1 CGGGGTTGGAGTAT-CCC-CGATTTAAA-GAAATTAATATTTTGAAAATAAAAC
2188850 CGGGGTTGGAGTATCCCCGATT
1 CGGGGTTGGAGTATCCCCGATT
2188872 ACGAGCAATT
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
51 20 0.31
52 8 0.12
53 36 0.55
54 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.26, T:0.29
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATTTAAAGAAATTAATATTTTGAAAATAAAAC
Found at i:2189873 original size:18 final size:18
Alignment explanation
Indices: 2189799--2189873 Score: 53
Period size: 18 Copynumber: 4.1 Consensus size: 18
2189789 AATTGCTACC
* * *
2189799 TGCTAGAGTTGTTGCTCT
1 TGCTGGAGTTGCTGCTGT
* * * *
2189817 CGCTGGAGCTGCTGTTGCG
1 TGCTGGAGTTGCTGCTG-T
*
2189836 TGCTGGAGTTGCAG-TCGT
1 TGCTGGAGTTGCTGCT-GT
2189854 TGCTGGAGTTGCTGCTGT
1 TGCTGGAGTTGCTGCTGT
2189872 TG
1 TG
2189874 TTGCATGCTG
Statistics
Matches: 42, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
18 29 0.69
19 13 0.31
ACGTcount: A:0.08, C:0.19, G:0.37, T:0.36
Consensus pattern (18 bp):
TGCTGGAGTTGCTGCTGT
Found at i:2189984 original size:30 final size:26
Alignment explanation
Indices: 2189939--2189997 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 26
2189929 TTCTCATTCG
2189939 TTTTTTTTTTTTTGCTTATCCTCCCCC
1 TTTTTTTTTTTTTGCTT-TCCTCCCCC
*
2189966 TTTTTTTTTTTACGTTGCTTTCTTCCCCC
1 TTTTTTTTTTT---TTGCTTTCCTCCCCC
2189995 TTT
1 TTT
2189998 AATGCTTGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
27 11 0.39
29 11 0.39
30 6 0.21
ACGTcount: A:0.03, C:0.27, G:0.05, T:0.64
Consensus pattern (26 bp):
TTTTTTTTTTTTTGCTTTCCTCCCCC
Found at i:2190524 original size:50 final size:49
Alignment explanation
Indices: 2190443--2190601 Score: 255
Period size: 50 Copynumber: 3.2 Consensus size: 49
2190433 GCTTTTTTCA
*
2190443 TTTCCCATGCATGTCTCTGCATGTTTGTCTCCAATTGCAATTTTTATGC
1 TTTCCCATGCATGCCTCTGCATGTTTGTCTCCAATTGCAATTTTTATGC
* * *
2190492 TTTCCCATGCATGCCTCCGCATGCTTTGTCTCCAATTGCAATTTTTGTGT
1 TTTCCCATGCATGCCTCTGCATG-TTTGTCTCCAATTGCAATTTTTATGC
*
2190542 TTTCCCATGCATGCCTCTGCATGTTTTGTCTCCAATTGCAATCTTTATGC
1 TTTCCCATGCATGCCTCTGCATG-TTTGTCTCCAATTGCAATTTTTATGC
2190592 TTTCCCATGC
1 TTTCCCATGC
2190602 CGTATTTTCA
Statistics
Matches: 100, Mismatches: 9, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
49 21 0.21
50 79 0.79
ACGTcount: A:0.15, C:0.28, G:0.14, T:0.43
Consensus pattern (49 bp):
TTTCCCATGCATGCCTCTGCATGTTTGTCTCCAATTGCAATTTTTATGC
Found at i:2191540 original size:62 final size:61
Alignment explanation
Indices: 2191412--2192630 Score: 1441
Period size: 62 Copynumber: 19.9 Consensus size: 61
2191402 ATAAAGTGTA
* * * * *
2191412 TCCTGCTCTTTGAGGGCTGGAAGGTGCCACCAACTCGTGTGGGCTTTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGC--TTTGAAAAGAAAAGGCG
* *
2191475 TCCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGCGTGGGCTTTGAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * *
2191537 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
1 TCCTGCTCTTTGAGGACTG-AAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAG-AAAAGGCG
* *
2191599 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* * ** *
2191659 TCCTACTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGCGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* *
2191719 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * * *
2191781 TCCTGCTCTTTGAGGACCGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
1 TCCTGCTCTTTGAGGACTG--AAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAG-AAAAGGCG
* * ** *
2191844 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGTGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* *
2191904 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * * * *
2191966 TCCTGCTCTTTGAGGACCGAAAAAGTGCGACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
1 TCCTGCTCTTTGAGGACTG-AAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAG-AAAAGGCG
* *
2192028 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* * ** *
2192088 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGTGAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* * * * *
2192150 TCCAGCTTTTTGAGGACTGAAAAGGTGTCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGACG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* *
2192212 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* * ** *
2192272 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAGGCGAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* *
2192334 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * * ** *
2192396 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGTGAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* * *
2192456 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGAGCTTTGAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAA-GTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
* *
2192518 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAA-GAAAAGGCG
* * *
2192578 TCCTGCTCTTTGAGGAGTAGAAAAATGCCACCAACTTGTGTGGGCTTT-AAAAG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAG
2192631 GACTAAAAGG
Statistics
Matches: 1005, Mismatches: 117, Indels: 70
0.84 0.10 0.06
Matches are distributed among these distances:
59 23 0.02
60 339 0.34
61 30 0.03
62 497 0.49
63 87 0.09
64 29 0.03
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.26
Consensus pattern (61 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAGCTTGTGTGGGCTTTGAAAAGAAAAGGCG
Found at i:2191654 original size:122 final size:121
Alignment explanation
Indices: 2191412--2192632 Score: 1524
Period size: 122 Copynumber: 9.9 Consensus size: 121
2191402 ATAAAGTGTA
* * * * *
2191412 TCCTGCTCTTTGAGGGCTGGAAGGTGCCACCAACTCGTGTGGGCTTTTTGAAAAGAAAAGGCGTC
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGC--TTTGAAAGGAAAA-GCGTC
* * *
2191477 CTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGCGTGGGCTTTGAAAA-GAAAAGGCG
63 CTGCTCTTTGAGGACT-GAAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCG
* * *
2191537 TCCTGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCGTCC
1 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGCGTCC
*
2191602 TGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
64 TGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * * *
2191659 TCCTACTCTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCGAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGCGTCCT
* *
2191723 GCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
65 GCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * *
2191781 TCCTGCTCTTTGAGGACCGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAAGCGTC
1 TCCTGCTCTTTGAGGACTG--AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGCGTC
* ** *
2191846 CTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGTGAAGGTG
63 CTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
*
2191904 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAA-GCGTCC
* * * * * *
2191969 TGCTCTTTGAGGACCGAAAAAGTGCGACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
64 TGCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGG-AAAAGGCG
* *
2192028 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAA-GCGTCCT
** * ** *
2192092 GCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGTGAAGGTG
65 GCTCTTTGAGGACT-GAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * *
2192150 TCCAGCTTTTTGAGGACTGAAAAGGTGTCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGACGTCC
1 TCCTGCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAG-CGTCC
*
2192215 TGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
64 TGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
** * * * * *
2192272 TCCTGCTCTTTGAGGACTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAGGTGTCC
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGCGTCC
* *
2192337 TGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
64 TGCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
* * * *
2192396 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGTGAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGCGTCCT
* * *
2192460 GCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGAGCTTTGAAAGGAAAAGGCG
65 GCTCTTTGAGGACTG-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
* *
2192518 TCCTGCTCTTTGAAGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCT
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAA-GCGTCCT
* ** *
2192582 GCTCTTTGAGGAGTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGA
65 GCTCTTTGAGGACT-GAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGA
2192633 CTAAAAGGGT
Statistics
Matches: 974, Mismatches: 99, Indels: 49
0.87 0.09 0.04
Matches are distributed among these distances:
120 53 0.05
121 11 0.01
122 561 0.58
123 62 0.06
124 189 0.19
125 76 0.08
126 22 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (121 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGCGTCCTG
CTCTTTGAGGACTGAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCG
Found at i:2192093 original size:184 final size:184
Alignment explanation
Indices: 2191412--2192632 Score: 1654
Period size: 184 Copynumber: 6.6 Consensus size: 184
2191402 ATAAAGTGTA
* * * * * *
2191412 TCCTGCTCTTTGAGGGCTG-GAAGGTGCCACCAACTCGTGTGGGCTTTTTGAAAAGAAAAGGCGT
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGC--TTTGAAAGGAAAAGGCGT
* * * *
2191476 CCTGCTCTTTGAGGACTGGAAAAGTGCCACCAACTTGCGTGGGCTTTGAAAA-GAAAAGGCGTCC
64 CCTGCTCTTTGAAGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCC
* *
2191540 TGCTCTTTGAGGACTGAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCG
126 TGCTCTTTGAGGACTGAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG-AAAAGGCG
* * *
2191599 TCCTGCTCTTTGAAGA-C-TAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
* * ** * *
2191662 TACTCTTTGAGGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGCGAAGGTGTCCTGCTT
66 TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
*
2191727 TTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
131 TTTGAGGACTGAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
* * *
2191781 TCCTGCTCTTTGAGGACCGAAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCGT
1 TCCTGCTCTTTGAGGACCG-AAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGGCGT
** *
2191845 CCTGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGTGAAGGTGTCCTGC
64 CCTGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGC
* *
2191910 TTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCG
129 TCTTTGAGGACTGAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
* * * *
2191966 TCCTGCTCTTTGAGGACCGAAAAAGTGCGACCAACTTGTGTGGGCTTTGAAAGGCGAAA-GCGTC
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGG-AAAAGGCGTC
2192030 CTGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT
65 CTGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT
* * ** *
2192095 CTTTGAGGACTAGAAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGTGAAGGTG
130 CTTTGAGGACT-GAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
* * * * *
2192150 TCCAGCTTTTTGAGGACTGAAAAGGTGTCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGACGTCC
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
2192215 TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
66 TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
* * ** *
2192280 TTTGAGGACTAGAAAA-ATGCCACCAACTTGTGTGGGCTTTAAAAGGCGAAGGTG
131 TTTGAGGACT-GAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
* *
2192334 TCCTGCTTTTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
* ** * *
2192399 TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGTGAAGGTGTCCTGCTT
66 TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
* *
2192464 TTTGAGGACTGAAAAGGTGCCACCAGCTTGTGTGAGCTTTGAAAGGAAAAGGCG
131 TTTGAGGACTGAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
* * *
2192518 TCCTGCTCTTTGAAGA-C-TAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCC
1 TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
* * ** *
2192581 TGCTCTTTGAGGAGTAGAAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGA
66 TGCTCTTTGAAGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGA
2192633 CTAAAAGGGT
Statistics
Matches: 946, Mismatches: 76, Indels: 27
0.90 0.07 0.03
Matches are distributed among these distances:
181 7 0.01
182 157 0.17
183 9 0.01
184 557 0.59
185 177 0.19
186 25 0.03
187 14 0.01
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.25
Consensus pattern (184 bp):
TCCTGCTCTTTGAGGACCGAAAAGGTGCCACCAGCTTGTGTGGGCTTTGAAAGGAAAAGGCGTCC
TGCTCTTTGAAGACTAAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCTC
TTTGAGGACTGAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAAGGCG
Found at i:2200784 original size:20 final size:20
Alignment explanation
Indices: 2200761--2200833 Score: 101
Period size: 20 Copynumber: 3.6 Consensus size: 20
2200751 ACAATTCAAA
2200761 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
****
2200781 GTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCA-AT
2200802 GTATCGATACATGTTGCAAT
1 GTATCGATACATGTTGCAAT
2200822 GTATCGATACAT
1 GTATCGATACAT
2200834 AAAAAAGATG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 28 0.64
21 16 0.36
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (20 bp):
GTATCGATACATGTTGCAAT
Found at i:2200805 original size:21 final size:21
Alignment explanation
Indices: 2200779--2200854 Score: 100
Period size: 21 Copynumber: 3.7 Consensus size: 21
2200769 ACATGTTGCA
2200779 ATGTATCGATACATGAAAAAG
1 ATGTATCGATACATGAAAAAG
****
2200800 ATGTATCGATACATGTTGCA-
1 ATGTATCGATACATGAAAAAG
*
2200820 ATGTATCGATACATAAAAAAG
1 ATGTATCGATACATGAAAAAG
2200841 ATGTATCGATACAT
1 ATGTATCGATACAT
2200855 TTCTTGGCAG
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 15 0.33
21 30 0.67
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.29
Consensus pattern (21 bp):
ATGTATCGATACATGAAAAAG
Found at i:2200812 original size:41 final size:41
Alignment explanation
Indices: 2200761--2200854 Score: 179
Period size: 41 Copynumber: 2.3 Consensus size: 41
2200751 ACAATTCAAA
*
2200761 GTATCGATACATGTTGCAATGTATCGATACATGAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2200802 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
1 GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
2200843 GTATCGATACAT
1 GTATCGATACAT
2200855 TTCTTGGCAG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 52 1.00
ACGTcount: A:0.39, C:0.13, G:0.18, T:0.30
Consensus pattern (41 bp):
GTATCGATACATGTTGCAATGTATCGATACATAAAAAAGAT
Found at i:2200911 original size:13 final size:13
Alignment explanation
Indices: 2200893--2200918 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
2200883 TACAGCAAGT
2200893 ATGTATCGATACA
1 ATGTATCGATACA
2200906 ATGTATCGATACA
1 ATGTATCGATACA
2200919 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:2205016 original size:16 final size:16
Alignment explanation
Indices: 2204980--2205016 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
2204970 GATAAAAATG
2204980 TCCAAAATGAGAAAGC
1 TCCAAAATGAGAAAGC
2204996 T-CAAAATGA-AGAAGC
1 TCCAAAATGAGA-AAGC
2205011 TCCAAA
1 TCCAAA
2205017 CGAAATTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
14 1 0.05
15 13 0.68
16 5 0.26
ACGTcount: A:0.51, C:0.19, G:0.16, T:0.14
Consensus pattern (16 bp):
TCCAAAATGAGAAAGC
Done.