Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold46
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2524624
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 119418 characters in sequence are not A, C, G, or T
File 3 of 15
Found at i:279272 original size:21 final size:21
Alignment explanation
Indices: 279239--279283 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
279229 TTGCAAGTTG
*
279239 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
279261 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
279281 AAA
1 AAA
279284 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:281107 original size:15 final size:15
Alignment explanation
Indices: 281087--281117 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
281077 TAAAAATGTC
*
281087 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
281102 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
281117 C
1 C
281118 TAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:283365 original size:20 final size:20
Alignment explanation
Indices: 283322--283367 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
283312 AAATCTTTTG
283322 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
283343 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
283363 CAAAA
1 CAAAA
283368 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:285779 original size:13 final size:13
Alignment explanation
Indices: 285761--285786 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
285751 TACAGCAAGT
285761 ATGTATCGATACA
1 ATGTATCGATACA
285774 ATGTATCGATACA
1 ATGTATCGATACA
285787 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:285869 original size:20 final size:21
Alignment explanation
Indices: 285840--285878 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
285830 GCTATTTTTT
285840 AAAATATGTATCGATACATCA
1 AAAATATGTATCGATACATCA
285861 AAAAT-TGTATCGATACAT
1 AAAATATGTATCGATACAT
285879 TTACACGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (21 bp):
AAAATATGTATCGATACATCA
Found at i:288757 original size:17 final size:18
Alignment explanation
Indices: 288735--288768 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
288725 ATTTTTTTCC
288735 AAAG-AAAAGAAAAAAAG
1 AAAGAAAAAGAAAAAAAG
288752 AAAGAAAAAGAAAAAAA
1 AAAGAAAAAGAAAAAAA
288769 TTACGTGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (18 bp):
AAAGAAAAAGAAAAAAAG
Found at i:288817 original size:15 final size:17
Alignment explanation
Indices: 288779--288833 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
288769 TTACGTGTTT
*
288779 ATATTTTTATTTATATA
1 ATATTATTATTTATATA
*
288796 ATTTTATTATTTA-A-A
1 ATATTATTATTTATATA
*
288811 ATATTATAAATTTATATA
1 ATATTAT-TATTTATATA
288829 ATATT
1 ATATT
288834 TACAAATTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
15 7 0.23
16 6 0.19
17 12 0.39
18 6 0.19
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTATTATTTATATA
Found at i:292922 original size:20 final size:20
Alignment explanation
Indices: 292893--293059 Score: 93
Period size: 20 Copynumber: 8.8 Consensus size: 20
292883 AAAAAGACAT
*
292893 AATGTATCGATACATTGCAG
1 AATGTATCGATACATTGCAA
*
292913 AATATATCGATACATT-CATA
1 AATGTATCGATACATTGCA-A
* * *
292933 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTGCAA
292953 AATGTATCGATACA-T-C--
1 AATGTATCGATACATTGCAA
** * ** *
292969 AGGGTA---A-AAATAACAT
1 AATGTATCGATACATTGCAA
*
292985 AATGTATCGATACATTGCAG
1 AATGTATCGATACATTGCAA
*
293005 AATATATCGATACATT-CATA
1 AATGTATCGATACATTGCA-A
* * * *
293025 CATGTATTGATATATTGAAA
1 AATGTATCGATACATTGCAA
293045 AATGTATCGATACAT
1 AATGTATCGATACAT
293060 CAGGGTAAAA
Statistics
Matches: 106, Mismatches: 29, Indels: 24
0.67 0.18 0.15
Matches are distributed among these distances:
12 2 0.02
13 1 0.01
14 1 0.01
16 8 0.08
19 6 0.06
20 86 0.81
21 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (20 bp):
AATGTATCGATACATTGCAA
Found at i:292940 original size:40 final size:40
Alignment explanation
Indices: 292890--293059 Score: 135
Period size: 40 Copynumber: 4.0 Consensus size: 40
292880 GGTAAAAAGA
* *
292890 CATA-ATGTATCGATACATTGCAGAATATATCGATACATT
1 CATACATGTATCGATACATTGAAAAATATATCGATACATT
* *
292929 CATACATGTATCGATATATTGAAAAATGTATCGATACATCAGGGT
1 CATACATGTATCGATACATTGAAAAATATATCGATACAT-----T
* * *
292974 AAAAATAACATAATGTATCGATACATTGCAGAATATATCGATACATT
1 ---CAT-AC---ATGTATCGATACATTGAAAAATATATCGATACATT
* * *
293021 CATACATGTATTGATATATTGAAAAATGTATCGATACAT
1 CATACATGTATCGATACATTGAAAAATATATCGATACAT
293060 CAGGGTAAAA
Statistics
Matches: 103, Mismatches: 15, Indels: 25
0.72 0.10 0.17
Matches are distributed among these distances:
39 4 0.04
40 59 0.57
43 2 0.02
44 2 0.02
45 1 0.01
47 1 0.01
48 2 0.02
49 2 0.02
52 30 0.29
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (40 bp):
CATACATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:293011 original size:92 final size:92
Alignment explanation
Indices: 292862--293071 Score: 370
Period size: 92 Copynumber: 2.3 Consensus size: 92
292852 TACATTATTC
* *
292862 AATGTATCGATATATCTA-GGTAAAAA-GACATAATGTATCGATACATTGCAGAATATATCGATA
1 AATGTATCGATACATC-AGGGTAAAAATAACATAATGTATCGATACATTGCAGAATATATCGATA
292925 CATTCATACATGTATCGATATATTGAAA
65 CATTCATACATGTATCGATATATTGAAA
292953 AATGTATCGATACATCAGGGTAAAAATAACATAATGTATCGATACATTGCAGAATATATCGATAC
1 AATGTATCGATACATCAGGGTAAAAATAACATAATGTATCGATACATTGCAGAATATATCGATAC
*
293018 ATTCATACATGTATTGATATATTGAAA
66 ATTCATACATGTATCGATATATTGAAA
293045 AATGTATCGATACATCAGGGTAAAAAT
1 AATGTATCGATACATCAGGGTAAAAAT
293072 GTGACTTTTC
Statistics
Matches: 114, Mismatches: 3, Indels: 3
0.95 0.03 0.03
Matches are distributed among these distances:
90 1 0.01
91 23 0.20
92 90 0.79
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.31
Consensus pattern (92 bp):
AATGTATCGATACATCAGGGTAAAAATAACATAATGTATCGATACATTGCAGAATATATCGATAC
ATTCATACATGTATCGATATATTGAAA
Found at i:293414 original size:17 final size:18
Alignment explanation
Indices: 293388--293429 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
293378 TTAATTTCAA
*
293388 ATTT-AATTACATAAAAT
1 ATTTAAATTACAAAAAAT
293405 -TTTAAATTACAAAAAAT
1 ATTTAAATTACAAAAAAT
293422 ATTTAAAT
1 ATTTAAAT
293430 AAATAATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 12 0.55
18 7 0.32
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTTAAATTACAAAAAAT
Found at i:293496 original size:26 final size:27
Alignment explanation
Indices: 293452--293504 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 27
293442 TTTAATACTT
*
293452 TTTAATATAAATTTATATAATTATTAA
1 TTTAATATAAATTTATATAAATATTAA
*
293479 TTTAAT-TAAATTTTTATAAATATTAA
1 TTTAATATAAATTTATATAAATATTAA
293505 AAATCTTTCG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 18 0.75
27 6 0.25
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (27 bp):
TTTAATATAAATTTATATAAATATTAA
Found at i:302376 original size:10 final size:10
Alignment explanation
Indices: 302363--302392 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
302353 CCATTTCATA
302363 TTTTTTCTTT
1 TTTTTTCTTT
302373 TTTTTTCTTT
1 TTTTTTCTTT
*
302383 TTCTTTCTTT
1 TTTTTTCTTT
302393 CTTCTTCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.13, G:0.00, T:0.87
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:302385 original size:16 final size:17
Alignment explanation
Indices: 302364--302398 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
302354 CATTTCATAT
*
302364 TTTTTCTTT-TTTTTTC
1 TTTTTCTTTCTTTCTTC
302380 TTTTTCTTTCTTTCTTC
1 TTTTTCTTTCTTTCTTC
302397 TT
1 TT
302399 CATCTTCCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (17 bp):
TTTTTCTTTCTTTCTTC
Found at i:304572 original size:19 final size:21
Alignment explanation
Indices: 304530--304576 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
304520 TAGCCTTTGA
*
304530 CCATGCATTTTTTACTATGTT
1 CCATGCATTTTTAACTATGTT
304551 CCATGCATTTTTAAC-ATG-T
1 CCATGCATTTTTAACTATGTT
304570 CCA-GCAT
1 CCATGCAT
304577 GTCATTGAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.16
19 4 0.16
20 3 0.12
21 14 0.56
ACGTcount: A:0.23, C:0.23, G:0.11, T:0.43
Consensus pattern (21 bp):
CCATGCATTTTTAACTATGTT
Found at i:307567 original size:19 final size:19
Alignment explanation
Indices: 307543--307638 Score: 99
Period size: 19 Copynumber: 5.7 Consensus size: 19
307533 CAAACAGAAA
*
307543 TTGTATTGATACATAAGTG
1 TTGTATCGATACATAAGTG
307562 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
307576 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
307594 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
307608 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
307626 TTGTATCGATACA
1 TTGTATCGATACA
307639 ATGTATTGCT
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 22 0.34
15 4 0.06
17 4 0.06
19 34 0.53
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:307581 original size:13 final size:13
Alignment explanation
Indices: 307563--307619 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
307553 ACATAAGTGT
307563 TGTATCGATACAA
1 TGTATCGATACAA
307576 TGTATCGATACATAA
1 TGTATCGATAC--AA
307591 GTGTTGTATCGATACAA
1 ----TGTATCGATACAA
307608 TGTATCGATACA
1 TGTATCGATACA
307620 TAAGTGTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:307586 original size:32 final size:32
Alignment explanation
Indices: 307544--307644 Score: 193
Period size: 32 Copynumber: 3.2 Consensus size: 32
307534 AAACAGAAAT
*
307544 TGTATTGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
307576 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
307608 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
307640 TGTAT
1 TGTAT
307645 TGCTACGAAG
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 68 1.00
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:307700 original size:21 final size:19
Alignment explanation
Indices: 307670--307724 Score: 56
Period size: 20 Copynumber: 2.7 Consensus size: 19
307660 GCTAAGGAAA
* *
307670 TGTATTGATACATTACTCAAT
1 TGTATCGATACATGA-TC-AT
*
307691 TGTATCGATACACTGATCTT
1 TGTATCGATACA-TGATCAT
307711 TGTATCGATACATG
1 TGTATCGATACATG
307725 CAGGCAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 2 0.07
20 13 0.43
21 13 0.43
22 2 0.07
ACGTcount: A:0.29, C:0.16, G:0.15, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATGATCAT
Found at i:311890 original size:20 final size:20
Alignment explanation
Indices: 311848--311921 Score: 114
Period size: 20 Copynumber: 3.6 Consensus size: 20
311838 TTCAACAATT
311848 TGTATCGATACAATAAG-GCAA
1 TGTATCGATAC-ATAAGTG-AA
*
311869 TGTATTGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
311889 TGTATCGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
311909 TGTATCGATACAT
1 TGTATCGATACAT
311922 GCCTAAAATG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
20 39 0.78
21 11 0.22
ACGTcount: A:0.39, C:0.11, G:0.19, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:311932 original size:41 final size:41
Alignment explanation
Indices: 311848--311935 Score: 99
Period size: 40 Copynumber: 2.1 Consensus size: 41
311838 TTCAACAATT
* * *
311848 TGTATCGATACAATAAGGCAATGTATTGATACATAAGTGAA
1 TGTATCGATACAATAAGGCAATGTATCGATACATAACTAAA
**
311889 TGTATCGATAC-ATAAGTG-AATGTATCGATACATGCCTAAAA
1 TGTATCGATACAATAAG-GCAATGTATCGATACATAACT-AAA
311930 TGTATC
1 TGTATC
311936 AACACAAGAC
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
40 20 0.50
41 20 0.50
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (41 bp):
TGTATCGATACAATAAGGCAATGTATCGATACATAACTAAA
Found at i:315631 original size:19 final size:19
Alignment explanation
Indices: 315607--315643 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
315597 GAGCGATTTG
*
315607 GGGACTTGTTGTTTTAGAA
1 GGGACTTATTGTTTTAGAA
315626 GGGACTTATTGTTTTAGA
1 GGGACTTATTGTTTTAGA
315644 GTCATCTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.22, C:0.05, G:0.30, T:0.43
Consensus pattern (19 bp):
GGGACTTATTGTTTTAGAA
Found at i:317151 original size:155 final size:157
Alignment explanation
Indices: 316814--317233 Score: 490
Period size: 155 Copynumber: 2.7 Consensus size: 157
316804 AATACAGATC
* * * * * * * *
316814 TTTGGCATAAAAGCATCCCGATGGCAACCTACGACTAGGTTCTAGAAAAATTATGAAAATGCCTT
1 TTTGGCATAAAAGCATTCCGATGACAACCTAAGACTCGATTCTAAAAAAATTATGAAAATACCCT
* * * *
316879 TATGGGTATACCTTCGACATAAAAATATCCCAGTAACCCCAAAAGATTTAAAAAGGATCATAAAT
66 TATGGGTATACCTTCAACATAAAAGTATCCCAGTAACCCTAAAAGACTTAAAAAGGATCATAAAT
* * *
316944 GGGATGAACCTATCCTAAATATCCACC
131 GAGATGAACCTATACTAAATATCCACA
* *
316971 TTTGGCATAAAAGCA-TCCTGATGACAACTTAAGACCCGATTCTAAAAAAATTATGAAAATACCC
1 TTTGGCATAAAAGCATTCC-GATGACAACCTAAGACTCGATTCTAAAAAAATTATGAAAATACCC
* ** * * * *
317035 CTATGGGTATATTTTCAACATGAAAGTAT-CCAATAACCCTAAAAGACTT-CAAAGGATCATAAC
65 TTATGGGTATACCTTCAACATAAAAGTATCCCAGTAACCCTAAAAGACTTAAAAAGGATCATAAA
317098 TGAGATGAACCTATACTAAATA-CCTACA
130 TGAGATGAACCTATACTAAATATCC-ACA
* * * * **
317126 TTTGGCATAAAAGCATTCCGTTGACAACCTAGGACTC-AGTTTTGAAAAAATTACAAAAATACCC
1 TTTGGCATAAAAGCATTCCGATGACAACCTAAGACTCGA-TTCTAAAAAAATTATGAAAATACCC
* *
317190 TTATAGGTAGACCTTCAACATAAAAGTATCCCAGTAACCCTAAA
65 TTATGGGTATACCTTCAACATAAAAGTATCCCAGTAACCCTAAA
317234 CGATAAAAAA
Statistics
Matches: 219, Mismatches: 39, Indels: 11
0.81 0.14 0.04
Matches are distributed among these distances:
154 3 0.01
155 107 0.49
156 35 0.16
157 74 0.34
ACGTcount: A:0.40, C:0.21, G:0.14, T:0.25
Consensus pattern (157 bp):
TTTGGCATAAAAGCATTCCGATGACAACCTAAGACTCGATTCTAAAAAAATTATGAAAATACCCT
TATGGGTATACCTTCAACATAAAAGTATCCCAGTAACCCTAAAAGACTTAAAAAGGATCATAAAT
GAGATGAACCTATACTAAATATCCACA
Found at i:319328 original size:154 final size:154
Alignment explanation
Indices: 319036--319369 Score: 367
Period size: 154 Copynumber: 2.2 Consensus size: 154
319026 ATATATATAT
* *
319036 AAAATC-AAAACTCATAAAATAAATTAAATTTTCTAAAATTGATTTAATATAAATTTAATAAAAA
1 AAAATCTAAAACTCATAAAATAAATTAAATTTTCTAAAACTGATTTAATATAAATTAAATAAAAA
* * * * * *
319100 TATTTGATAAATTTTAAAATTTTTGAATTGGGAAAGATCTAACTGGATAAATTTATGGAATAAAA
66 TATTTGATAAATTTTAAAATTTATAAATTGAGAAAGATCTAACTGAAGAAATTTATAGAATAAAA
319165 AATCTCATATTTTGGAAACAGAAA
131 AATCTCATATTTTGGAAACAGAAA
* * * *
319189 AAAATCTAAAACTCGTAAAATAAATTAAATTTTTTAAAACTGATTTAATATTAATTAAATAATAA
1 AAAATCTAAAACTCATAAAATAAATTAAATTTTCTAAAACTGATTTAATATAAATTAAATAAAAA
* * *
319254 TATTTGA-AGAATTTTGAAGA-TTATAAACTT-AGAGAA-ATCCTATC-GAAGAAATTTATAGAG
66 TATTTGATA-AATTTT-AAAATTTATAAA-TTGAGA-AAGAT-CTAACTGAAGAAATTTATAGAA
* ***
319314 TAAAAAA-CTCCATATTTTGGTAGTTGAAA
126 TAAAAAATCT-CATATTTTGGAAACAGAAA
* *
319343 AAAATTCTAAAGCTTATAAAATAAATT
1 AAAA-TCTAAAACTCATAAAATAAATT
319370 GAATAATTTG
Statistics
Matches: 151, Mismatches: 22, Indels: 14
0.81 0.12 0.07
Matches are distributed among these distances:
153 9 0.06
154 112 0.74
155 30 0.20
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (154 bp):
AAAATCTAAAACTCATAAAATAAATTAAATTTTCTAAAACTGATTTAATATAAATTAAATAAAAA
TATTTGATAAATTTTAAAATTTATAAATTGAGAAAGATCTAACTGAAGAAATTTATAGAATAAAA
AATCTCATATTTTGGAAACAGAAA
Found at i:321241 original size:33 final size:33
Alignment explanation
Indices: 321203--321269 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
321193 ATTGTACATT
321203 AAGCATGTTATTTTTGACCAGTCTATATTAAGG
1 AAGCATGTTATTTTTGACCAGTCTATATTAAGG
321236 AAGCATGTTATTTTTGACCAGTCTATATTAAGG
1 AAGCATGTTATTTTTGACCAGTCTATATTAAGG
321269 A
1 A
321270 GGATAGTCCA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.39
Consensus pattern (33 bp):
AAGCATGTTATTTTTGACCAGTCTATATTAAGG
Found at i:321293 original size:22 final size:22
Alignment explanation
Indices: 321268--321317 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
321258 CTATATTAAG
321268 GAGGATAGTCCACCATCATTTA
1 GAGGATAGTCCACCATCATTTA
321290 GAGGATAGTCCACCATCATTTA
1 GAGGATAGTCCACCATCATTTA
*
321312 AAGGAT
1 GAGGAT
321318 GGTTGGCCAG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (22 bp):
GAGGATAGTCCACCATCATTTA
Found at i:329217 original size:13 final size:13
Alignment explanation
Indices: 329199--329225 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
329189 TACAATTCTT
329199 AATGTATCGATAC
1 AATGTATCGATAC
329212 AATGTATCGATAC
1 AATGTATCGATAC
329225 A
1 A
329226 TTATCCTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:329237 original size:33 final size:32
Alignment explanation
Indices: 329177--329244 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
329167 GCTGTTGGGC
*
329177 ACAATGTATCAATACAATTCTTAATGTATCGAT
1 ACAATGTATCAATACAATTCCTAATGTATC-AT
* *
329210 ACAATGTATCGATACATTATCCT-ATGTATCAT
1 ACAATGTATCAATACAAT-TCCTAATGTATCAT
329242 ACA
1 ACA
329245 TTTTACTTAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
32 5 0.16
33 23 0.74
34 3 0.10
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (32 bp):
ACAATGTATCAATACAATTCCTAATGTATCAT
Found at i:329318 original size:19 final size:19
Alignment explanation
Indices: 329273--329328 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
329263 CTGCCAGTTT
*
329273 CATGTATCGATACAATTGGG
1 CATGTATCGATACAA-TGAG
* *
329293 TATGTATTGATACAATGAG
1 CATGTATCGATACAATGAG
329312 CATGTATCGATACAATG
1 CATGTATCGATACAATG
329329 TATCGATACA
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
19 18 0.58
20 13 0.42
ACGTcount: A:0.34, C:0.12, G:0.21, T:0.32
Consensus pattern (19 bp):
CATGTATCGATACAATGAG
Found at i:329331 original size:13 final size:13
Alignment explanation
Indices: 329313--329339 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
329303 TACAATGAGC
329313 ATGTATCGATACA
1 ATGTATCGATACA
329326 ATGTATCGATACA
1 ATGTATCGATACA
329339 A
1 A
329340 GGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:329350 original size:20 final size:20
Alignment explanation
Indices: 329325--329378 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
329315 GTATCGATAC
329325 AATGTATCGATACAAGGCAT
1 AATGTATCGATACAAGGCAT
329345 AATGTATCGATACAAGGCAT
1 AATGTATCGATACAAGGCAT
329365 AATGTATCGATACA
1 AATGTATCGATACA
329379 TCTGGATGTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.26
Consensus pattern (20 bp):
AATGTATCGATACAAGGCAT
Found at i:337741 original size:13 final size:13
Alignment explanation
Indices: 337723--337747 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
337713 CCGTTGGGCA
337723 CAATGTATCGATG
1 CAATGTATCGATG
337736 CAATGTATCGAT
1 CAATGTATCGAT
337748 ATATTGTCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
CAATGTATCGATG
Found at i:340772 original size:71 final size:71
Alignment explanation
Indices: 340656--340794 Score: 278
Period size: 71 Copynumber: 2.0 Consensus size: 71
340646 CTTGATCTAG
340656 TGTTCGAATCTAGGTTTTAGTTTTCATGATGATGCTTGATCTTGATGTTTTGAGCTTAAATGAGC
1 TGTTCGAATCTAGGTTTTAGTTTTCATGATGATGCTTGATCTTGATGTTTTGAGCTTAAATGAGC
340721 AATGAT
66 AATGAT
340727 TGTTCGAATCTAGGTTTTAGTTTTCATGATGATGCTTGATCTTGATGTTTTGAGCTTAAATGAGC
1 TGTTCGAATCTAGGTTTTAGTTTTCATGATGATGCTTGATCTTGATGTTTTGAGCTTAAATGAGC
340792 AAT
66 AAT
340795 TATCCTTGTG
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 68 1.00
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (71 bp):
TGTTCGAATCTAGGTTTTAGTTTTCATGATGATGCTTGATCTTGATGTTTTGAGCTTAAATGAGC
AATGAT
Found at i:342430 original size:106 final size:106
Alignment explanation
Indices: 342236--342430 Score: 234
Period size: 106 Copynumber: 1.8 Consensus size: 106
342226 AGATAAAATT
* * ** * *
342236 ATGAAAATATTTAGAAACAAAGAGAAATTTTGAGTTTTTTTATGGAGAATGGGTTGGAATATCTC
1 ATGAAAATATTTAGAAACAAAAAGAAATTTTAAGTTTTTTTATAAAGAATAGGTTGGAACATCTC
*
342301 CTCGAAATAGTGGGGTTGCAGTTTCCCCAAACTCGAAGATC
66 CTCGAAATAGTGGAGTTGCAGTTTCCCCAAACTCGAAGATC
* *
342342 ATGAAAATATTTAGGAACAAAAAGTAAA-TTTAAGTTTTTTT-TAAAGAATAAGGTTGGAGCATC
1 ATGAAAATATTTAGAAACAAAAAG-AAATTTTAAGTTTTTTTATAAAGAAT-AGGTTGGAACATC
* * *
342405 -CCTTCGGAGTAGTGGAGTTGGAGTTT
64 TCC-TCGAAATAGTGGAGTTGCAGTTT
342431 TCTTGAAATT
Statistics
Matches: 74, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
105 8 0.11
106 63 0.85
107 3 0.04
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (106 bp):
ATGAAAATATTTAGAAACAAAAAGAAATTTTAAGTTTTTTTATAAAGAATAGGTTGGAACATCTC
CTCGAAATAGTGGAGTTGCAGTTTCCCCAAACTCGAAGATC
Found at i:345244 original size:13 final size:13
Alignment explanation
Indices: 345226--345250 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
345216 GAATTCATCA
345226 TGTATCGATACAT
1 TGTATCGATACAT
345239 TGTATCGATACA
1 TGTATCGATACA
345251 ATGTGCCATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:345358 original size:13 final size:13
Alignment explanation
Indices: 345340--345366 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
345330 TATAGTGAAC
345340 ATGTATCGATACA
1 ATGTATCGATACA
345353 ATGTATCGATACA
1 ATGTATCGATACA
345366 A
1 A
345367 AGCATAATGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:346803 original size:32 final size:32
Alignment explanation
Indices: 346765--346848 Score: 114
Period size: 32 Copynumber: 2.6 Consensus size: 32
346755 TTTGGTTTTT
*
346765 CAACAAGCAGTAATGAATAGCAAGCAAAGCAG
1 CAACAAGCAGTAATGAATAGCAAACAAAGCAG
* * *
346797 CAACAAGCAGCAATGAACAGCAAACAAAGTAG
1 CAACAAGCAGTAATGAATAGCAAACAAAGCAG
* *
346829 CAACAAACAATAATGAATAG
1 CAACAAGCAGTAATGAATAG
346849 TATCACAACA
Statistics
Matches: 44, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.54, C:0.19, G:0.18, T:0.10
Consensus pattern (32 bp):
CAACAAGCAGTAATGAATAGCAAACAAAGCAG
Found at i:350696 original size:25 final size:25
Alignment explanation
Indices: 350645--350696 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 25
350635 ACGACAACAA
* **
350645 CTGAAGAAGCAAACAATGGCAGCAG
1 CTGAAGAAGCAAACAACGAAAGCAG
* *
350670 CTGAAGAAGCAAGCAACGAAAGTAG
1 CTGAAGAAGCAAACAACGAAAGCAG
350695 CT
1 CT
350697 AAAAAAAGAA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.19, G:0.27, T:0.10
Consensus pattern (25 bp):
CTGAAGAAGCAAACAACGAAAGCAG
Found at i:352533 original size:79 final size:79
Alignment explanation
Indices: 352373--353068 Score: 410
Period size: 79 Copynumber: 8.9 Consensus size: 79
352363 TCTTTCTGGT
** * * * * * *
352373 CAACACCTTTCCTTTATTAAATCATATGGTTTTGTCAT-AATCAACTCCTTTTTATTGGTACATA
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATC-TCGATCAACTTCTTTTTATTGGTTCATA
*
352437 TGTTTTCATGCC-AGC
65 TGGTTTCAT-CCTAGC
* * * *
352452 CAACACCTTTCCTTCGTTGACTTATATGGTTTTGTCTCGATCAACTTCTTTTTGTTGGTTCGTAT
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAACTTCTTTTTATTGGTTCATAT
* *
352517 GGTTTTATCCTGGC
66 GGTTTCATCCTAGC
** * * * * * *
352531 CAACACCTTTTATTTGTTGACTCATATAG--TT-T-T-G-T--A-TTCATTTTGTTGCTTTATAT
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAACTTCTTTTTATTGGTTCATAT
352587 GGTTTCATCCT-GAC
66 GGTTTCATCCTAG-C
* * **
352601 CAATACCTTTCCTTCGTTGACTCATATGGTTTTATC-CTGATCAACTT-TCTTTCATTGGTTTGT
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTC-GATCAACTTCT-TTTTATTGGTTCAT
*
352664 ATGGTTTTATCCTAGC
64 ATGGTTTCATCCTAGC
* * * * * * * * * *
352680 CAACACTCTTTTCTTCATTAACTCATATGGTTTCATCTCGGTTAATGCCCTCCTTTCATTGGTTT
1 CAACAC-CTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAA---CTTCTTTTTATTGGTTC
* * *
352745 GTATGGTTTCATCCCAAC
62 ATATGGTTTCATCCTAGC
* * * *
352763 CAACACCTTTCCTTCGTTGACT-AGTATGGTTTCATCTCAATCAACTT-TTTTCATTGGTACATA
1 CAACACCTTTCCTTCGTTGACTCA-TATGGTTTTATCTCGATCAACTTCTTTTTATTGGTTCATA
*
352826 TGGTTCCATCCTAGC
65 TGGTTTCATCCTAGC
* ** * * * * * * **
352841 CAACACCTTTTCTTTATTGACTCGTATGGTTTTGTCCCGGTCAACTTCTTTTCATTGTTTTGTAT
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAACTTCTTTTTATTGGTTCATAT
* *
352906 GG-TTC-TGTCTCAAC
66 GGTTTCAT-CCT-AGC
* * ** * * * ** *
352920 CAACACTTTTCCTTCATTGACTCATATAATTTCATC-CTAGTTAACTCTCTTTTGT-TAAG-ACA
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGA-TCAACT-TCTTTT-TATTGGTTCA
* * *
352982 TACGGTTCCATCCTGGC
63 TATGGTTTCATCCTAGC
* * * *
352999 CAACACCTTTCCTTCGTTGACTCATATGGTTTTGTCTCGGTCAACTT-TATTTTGTTGGTTCATG
1 CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAACTTCT-TTTTATTGGTTCATA
353063 TGGTTT
65 TGGTTT
353069 GTCCTGCTCA
Statistics
Matches: 468, Mismatches: 114, Indels: 70
0.72 0.17 0.11
Matches are distributed among these distances:
69 1 0.00
70 51 0.11
71 1 0.00
72 2 0.00
73 2 0.00
74 1 0.00
75 2 0.00
76 2 0.00
77 5 0.01
78 76 0.16
79 214 0.46
80 43 0.09
81 3 0.01
82 30 0.06
83 35 0.07
ACGTcount: A:0.19, C:0.23, G:0.14, T:0.45
Consensus pattern (79 bp):
CAACACCTTTCCTTCGTTGACTCATATGGTTTTATCTCGATCAACTTCTTTTTATTGGTTCATAT
GGTTTCATCCTAGC
Found at i:352744 original size:83 final size:82
Alignment explanation
Indices: 352649--352800 Score: 225
Period size: 83 Copynumber: 1.8 Consensus size: 82
352639 GATCAACTTT
* * * *
352649 CTTTCATTGGTTTGTATGGTTTTATCCTAGCCAACACTCTTTTCTTCATTAACTCA-TATGGTTT
1 CTTTCATTGGTTTGTATGGTTTCATCCCAACCAACAC-CTTTCCTTCATTAACT-AGTATGGTTT
352713 CATCTCGGTTAATGCCCTC
64 CATCTCGGTTAATGCCCTC
* *
352732 CTTTCATTGGTTTGTATGGTTTCATCCCAACCAACACCTTTCCTTCGTTGACTAGTATGGTTTCA
1 CTTTCATTGGTTTGTATGGTTTCATCCCAACCAACACCTTTCCTTCATTAACTAGTATGGTTTCA
352797 TCTC
66 TCTC
352801 AATCAACTTT
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
81 1 0.02
82 27 0.44
83 34 0.55
ACGTcount: A:0.18, C:0.25, G:0.14, T:0.43
Consensus pattern (82 bp):
CTTTCATTGGTTTGTATGGTTTCATCCCAACCAACACCTTTCCTTCATTAACTAGTATGGTTTCA
TCTCGGTTAATGCCCTC
Found at i:352836 original size:78 final size:79
Alignment explanation
Indices: 352584--352955 Score: 317
Period size: 78 Copynumber: 4.7 Consensus size: 79
352574 TGTTGCTTTA
* * * * *
352584 TATGGTTTCATCCTGACCAATACCTTTCCTTCGTTGACTCATATGGTTTTATC-CTGATCAACTT
1 TATGGTTTCATCCTAACCAACACCTTTCCTTCATTGACTCATATGGTTTCATCTCTAATCAACTT
352648 TCTTTCATTGGTTTG
66 T-TTTCATTGGTTTG
* * * *
352663 TATGGTTTTATCCTAGCCAACACTCTTTTCTTCATTAACTCATATGGTTTCATCTCGGTTAATGC
1 TATGGTTTCATCCTAACCAACAC-CTTTCCTTCATTGACTCATATGGTTTCATCTC---TAAT-C
* **
352728 -CCTCCTTTCATTGGTTTG
61 AACTTTTTTCATTGGTTTG
* *
352746 TATGGTTTCATCCCAACCAACACCTTTCCTTCGTTGACT-AGTATGGTTTCATCTC-AATCAACT
1 TATGGTTTCATCCTAACCAACACCTTTCCTTCATTGACTCA-TATGGTTTCATCTCTAATCAACT
***
352809 TTTTTCATTGGTACA
65 TTTTTCATTGGTTTG
* * * * * ** ***
352824 TATGGTTCCATCCTAGCCAACACCTTTTCTTTATTGACTCGTATGGTTTTGTC-CCGGTCAACTT
1 TATGGTTTCATCCTAACCAACACCTTTCCTTCATTGACTCATATGGTTTCATCTCTAATCAACTT
*
352888 CTTTTCATTGTTTTG
66 -TTTTCATTGGTTTG
* * **
352903 TATGG-TTC-TGTCTCAACCAACACTTTTCCTTCATTGACTCATATAATTTCATC
1 TATGGTTTCAT-CCT-AACCAACACCTTTCCTTCATTGACTCATATGGTTTCATC
352956 CTAGTTAACT
Statistics
Matches: 230, Mismatches: 50, Indels: 26
0.75 0.16 0.08
Matches are distributed among these distances:
77 3 0.01
78 69 0.30
79 64 0.28
80 26 0.11
81 2 0.01
82 27 0.12
83 33 0.14
84 5 0.02
85 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.13, T:0.44
Consensus pattern (79 bp):
TATGGTTTCATCCTAACCAACACCTTTCCTTCATTGACTCATATGGTTTCATCTCTAATCAACTT
TTTTCATTGGTTTG
Found at i:353190 original size:38 final size:38
Alignment explanation
Indices: 353148--353338 Score: 95
Period size: 41 Copynumber: 4.9 Consensus size: 38
353138 ATATTATTTC
353148 ATCTCGGTCAACTTCCTTTTATTGGTTCATATGGTTTT
1 ATCTCGGTCAACTTCCTTTTATTGGTTCATATGGTTTT
** * * * *
353186 ATCTCGACCAA-TACCTTTTCTTCGTTGACTCGTATGGTTTT
1 ATCTCGGTCAACTTCCTTTTATT-G--G-TTCATATGGTTTT
* * * **
353227 GTCTTGGTCAACTT-TTTTTAATTGGTTTGTATGGTTTT
1 ATCTCGGTCAACTTCCTTTT-ATTGGTTCATATGGTTTT
* * * * *
353265 ATCCTAGCT-AAC-ACCTTTTATTTAGTGACTCATATGGTTTC
1 AT-CTCGGTCAACTTCCTTTTA-TT-G-G-TTCATATGGTTTT
*
353306 ATC-CTGGTCAACTTCCTTTCATTGGTTCATATG
1 ATCTC-GGTCAACTTCCTTTTATTGGTTCATATG
353339 ATTTCGTCCT
Statistics
Matches: 109, Mismatches: 29, Indels: 30
0.65 0.17 0.18
Matches are distributed among these distances:
37 10 0.09
38 38 0.35
39 7 0.06
40 6 0.06
41 39 0.36
42 9 0.08
ACGTcount: A:0.18, C:0.19, G:0.16, T:0.47
Consensus pattern (38 bp):
ATCTCGGTCAACTTCCTTTTATTGGTTCATATGGTTTT
Found at i:353357 original size:79 final size:78
Alignment explanation
Indices: 353098--353468 Score: 248
Period size: 79 Copynumber: 4.7 Consensus size: 78
353088 TGTTAGTACG
* * * * * **
353098 TATGGTTTCATCTTGGCTAACACCTTTTCTTTGTTAACTCATATTATTTCAT-CTCGGTCAACTT
1 TATGGTTTTATCCTGACAAACACCTTTT-TTTGTTGACTCATATGGTTTCATCCT-GGTCAACTT
*
353162 CCTTTTATTGGTTCA
64 CCTTTAATTGGTTCA
* * * * ** *
353177 TATGGTTTTAT-CTCGACCAATACCTTTTCTTCGTTGACTCGTATGGTTTTGTCTTGGTCAACTT
1 TATGGTTTTATCCT-GACAAACACCTTTT-TTTGTTGACTCATATGGTTTCATCCTGGTCAACTT
** **
353241 TTTTTAATTGGTTTG
64 CCTTTAATTGGTTCA
*
353256 TATGGTTTTATCCT-AGCTAACACCTTTTATTTAG-TGACTCATATGGTTTCATCCTGGTCAACT
1 TATGGTTTTATCCTGA-CAAACACCTTTT-TTT-GTTGACTCATATGGTTTCATCCTGGTCAACT
*
353319 TCCTTTCATTGGTTCA
63 TCCTTTAATTGGTTCA
* ** * * ** * * *
353335 TATGATTTCGTCCTGACAAACACCTTTCTTTTGTTGACTTATTTGGTTTTTTCCCGATCAACTTT
1 TATGGTTTTATCCTGACAAACACCTTT-TTTTGTTGACTCATATGGTTTCATCCTGGTCAACTTC
*** **
353400 CTTTCGCTGGTTTG
65 CTTTAATTGGTTCA
* * * *
353414 CATGGTTTCATCCTGGTC-AACACCCTTTTCTTTGTTGACTCGTATGGTTTCATCC
1 TATGGTTTTATCCT-GACAAACA-CCTTTT-TTTGTTGACTCATATGGTTTCATCC
353469 CGATCAATGC
Statistics
Matches: 226, Mismatches: 55, Indels: 21
0.75 0.18 0.07
Matches are distributed among these distances:
78 3 0.01
79 190 0.84
80 33 0.15
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (78 bp):
TATGGTTTTATCCTGACAAACACCTTTTTTTGTTGACTCATATGGTTTCATCCTGGTCAACTTCC
TTTAATTGGTTCA
Found at i:353360 original size:158 final size:158
Alignment explanation
Indices: 353097--353468 Score: 403
Period size: 158 Copynumber: 2.3 Consensus size: 158
353087 TTGTTAGTAC
* * **
353097 GTATGGTTTCATCTTGGCTAACACCTTTTCTTTGTTAACTCATATTATTTCAT-CTCGGTCAACT
1 GTATGGTTTCATCCT-GCTAACACCTTTTCTTTGTTGACTCATATGGTTTCATCCTCGGTCAACT
* * * * * *
353161 TCCTTTTATTGGTTCATATGGTTTTATCTCGACCAATACCTTT-TCTTCGTTGACTCGTATGGTT
65 TCCTTTCATTGGTTCATATGATTTCATCTCGACAAACACCTTTCT-TTCGTTGACTCATATGGTT
** * * *
353225 TTGTCTTGGTCAACTTTTTTTAATTGGTTT
129 TTGTCCCGATCAACTTTCTTTAACTGGTTT
* *
353255 GTATGGTTTTATCCTAGCTAACACCTTTTATTTAG-TGACTCATATGGTTTCATCCT-GGTCAAC
1 GTATGGTTTCATCCT-GCTAACACCTTTTCTTT-GTTGACTCATATGGTTTCATCCTCGGTCAAC
* * * *
353318 TTCCTTTCATTGGTTCATATGATTTCGTC-CTGACAAACACCTTTCTTTTGTTGACTTATTTGGT
64 TTCCTTTCATTGGTTCATATGATTTCATCTC-GACAAACACCTTTCTTTCGTTGACTCATATGGT
* **
353382 TTTTTCCCGATCAACTTTCTTTCGCTGGTTT
128 TTTGTCCCGATCAACTTTCTTTAACTGGTTT
* * *
353413 GCATGGTTTCATCCTGGTCAACACCCTTTTCTTTGTTGACTCGTATGGTTTCATCC
1 GTATGGTTTCATCCTGCT-AACA-CCTTTTCTTTGTTGACTCATATGGTTTCATCC
353469 CGATCAATGC
Statistics
Matches: 177, Mismatches: 30, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
157 3 0.02
158 142 0.80
159 32 0.18
ACGTcount: A:0.17, C:0.21, G:0.15, T:0.47
Consensus pattern (158 bp):
GTATGGTTTCATCCTGCTAACACCTTTTCTTTGTTGACTCATATGGTTTCATCCTCGGTCAACTT
CCTTTCATTGGTTCATATGATTTCATCTCGACAAACACCTTTCTTTCGTTGACTCATATGGTTTT
GTCCCGATCAACTTTCTTTAACTGGTTT
Found at i:353843 original size:10 final size:10
Alignment explanation
Indices: 353828--353854 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
353818 GTATGGAATG
353828 AAATTTAATA
1 AAATTTAATA
353838 AAATTTAATA
1 AAATTTAATA
353848 AAATTTA
1 AAATTTA
353855 GGGGCTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (10 bp):
AAATTTAATA
Found at i:358642 original size:14 final size:14
Alignment explanation
Indices: 358623--358652 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
358613 AACCAGATCG
358623 TTACGGTAATGACA
1 TTACGGTAATGACA
358637 TTACGGTAATGACA
1 TTACGGTAATGACA
358651 TT
1 TT
358653 GCCTTGCCAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (14 bp):
TTACGGTAATGACA
Found at i:361739 original size:21 final size:22
Alignment explanation
Indices: 361713--361753 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
361703 GACATGCTGC
361713 AAATGCATGAAACAT-AGCTCA
1 AAATGCATGAAACATGAGCTCA
*
361734 AAATGCATGAATCATGAGCT
1 AAATGCATGAAACATGAGCT
361754 GTTAACATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (22 bp):
AAATGCATGAAACATGAGCTCA
Found at i:362717 original size:20 final size:20
Alignment explanation
Indices: 362689--362744 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
362679 TCGATTATTC
362689 AATGTATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
*
362709 AATGCATCGATACATTGAAT
1 AATGTATCGATACATTGAAT
362729 AATGTATCGATACATT
1 AATGTATCGATACATT
362745 TCCTTGGCAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.39, C:0.12, G:0.14, T:0.34
Consensus pattern (20 bp):
AATGTATCGATACATTGAAT
Found at i:364274 original size:20 final size:20
Alignment explanation
Indices: 364249--364319 Score: 115
Period size: 20 Copynumber: 3.5 Consensus size: 20
364239 TTCCTGCATA
*
364249 TATCGATACATTGAACAATG
1 TATCGATACATTGAATAATG
364269 TATCGATACATTGAATAATG
1 TATCGATACATTGAATAATG
* *
364289 TATCGATACAATGTATAATG
1 TATCGATACATTGAATAATG
364309 TATCGATACAT
1 TATCGATACAT
364320 CTAGGTAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.34
Consensus pattern (20 bp):
TATCGATACATTGAATAATG
Found at i:365405 original size:52 final size:52
Alignment explanation
Indices: 365114--365622 Score: 401
Period size: 52 Copynumber: 9.8 Consensus size: 52
365104 GAATGATAAG
* * **
365114 GGTGCCAATATGCTAATTCAAGGCCAGC-AGTATTGGACTTAAAGATGCG-AGT
1 GGTGCCAATATGCTGATTCAAGGCCAGCGA-CATTGGACTTAAAGATG-GTAAA
* * * * ** * * * *
365166 GATGTCATTGTGCTGATTCTCGGCTAGCGACATTAGACTTGACGAT-G-AGAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTA-AA
* * * ** * * *
365217 GAATGCCAATGTGCTGATTCAACGCCAGTAACATTGGGCTTAGGAATG-TTGCAAA
1 G-GTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GATGGTAAA
* * * * *
365272 --TGCCAATATGCTGATTCAAGGCTAACGATATCGGACTTAAAAAT-G--AA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
* * * * *
365319 GGTGCCAATGTGTTGATTCAAGGTCAGTGGCATTGGACTTAAAGATGGTAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
* * * * *
365371 GATGCCAATGTGCTGATTTAAGGCCAGCGACATTGGGCTTAAAGGTGGTAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
* * * * *
365423 GGTGCCAATATGCTCATTCAAGGCTAG-TAGTATTGGACTTAAAGGTGGTAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGA-CATTGGACTTAAAGATGGTAAA
* * * ** *
365475 GGTGCCAATATGTTGATTCAAGGCCAACAACATTAAACTTAAAGGTGGTAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
* *
365527 GGTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGGTAAA
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
* *
365579 GGTGCCAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAG
1 GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAG
365623 GTGCCACCAA
Statistics
Matches: 363, Mismatches: 78, Indels: 32
0.77 0.16 0.07
Matches are distributed among these distances:
47 2 0.01
49 35 0.10
50 6 0.02
51 2 0.01
52 309 0.85
53 2 0.01
54 2 0.01
55 4 0.01
56 1 0.00
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (52 bp):
GGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGGTAAA
Found at i:365541 original size:156 final size:154
Alignment explanation
Indices: 365219--365625 Score: 473
Period size: 156 Copynumber: 2.6 Consensus size: 154
365209 GATGAGAAGA
* * * * *
365219 ATGCCAATGTGCTGATTCAACGCCAGTAACATTGGGCTTAGGAATGTTGCAAA--TGCCAATATG
1 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTA--AAGGTGGTAAAGGTGCCAATATG
* ** * *
365282 CTGATTCAAGGCTA-ACGATATCGGACTTAAAAAT-GAAGGTGCCAATGTGTTGATTCAAGGTCA
64 CTGATTCAAGGCTAGA-GATATTGGACTTAAAGGTGGAAGGTGCCAATATGTTGATTCAAGGCCA
**** **
365345 GTGGCATTGGACTTAAAGATGGTAAAG
128 ACAACATTAAACTTAAAGATGGTAAAG
* *
365372 ATGCCAATGTGCTGATTTAAGGCCAGCGACATTGGGCTTAAAGGTGGTAAAGGTGCCAATATGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAAAGGTGGTAAAGGTGCCAATATGCT
*
365437 CATTCAAGGCTAGTAG-TATTGGACTTAAAGGTGGTAAAGGTGCCAATATGTTGATTCAAGGCCA
66 GATTCAAGGCTAG-AGATATTGGACTTAAAGGTGG--AAGGTGCCAATATGTTGATTCAAGGCCA
*
365501 ACAACATTAAACTTAAAGGTGGTAAAG
128 ACAACATTAAACTTAAAGATGGTAAAG
* * * * * *
365528 GTGCCAATATGCTGATTCAAGGCCAGCAACATTAGACTTAAAGATGGTAAAGGTGCCAATGTGCT
1 ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAAAGGTGGTAAAGGTGCCAATATGCT
* *
365593 GATTCAAGGCTAGCGACATTGGACTTAAAGGTG
66 GATTCAAGGCTAGAGATATTGGACTTAAAGGTG
365626 CCACCAACTT
Statistics
Matches: 215, Mismatches: 31, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
151 8 0.04
153 72 0.33
154 2 0.01
155 2 0.01
156 131 0.61
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (154 bp):
ATGCCAATGTGCTGATTCAAGGCCAGCAACATTGGGCTTAAAGGTGGTAAAGGTGCCAATATGCT
GATTCAAGGCTAGAGATATTGGACTTAAAGGTGGAAGGTGCCAATATGTTGATTCAAGGCCAACA
ACATTAAACTTAAAGATGGTAAAG
Found at i:365680 original size:31 final size:31
Alignment explanation
Indices: 365620--365900 Score: 253
Period size: 31 Copynumber: 9.0 Consensus size: 31
365610 ATTGGACTTA
365620 AAGG-TGCCACCAACTTGTGTGGGCTTTTGAG
1 AAGGTTGCCACCAACTTGTGTGGGC-TTTGAG
* * *
365651 AAGGTTACCACCAACTTGTCTGGGCTTTGAA
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
*
365682 AAGGTTGCCACCAACTTGTGTGGGCTTTAAG
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
* *** * * *
365713 AAGGTTACCAGTGACTTCTATAGGCTTTGAG
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
* * *** *
365744 GAGGTTGCCACCGACTTGTGTGTATTTTAAG
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
*
365775 AAGGGTTGCCACCAACTTGTGTGGGCTTTAGAAA
1 AA-GGTTGCCACCAACTTGTGTGGGCTTT-G-AG
* *
365809 AAGGTTACCACCGACTTGTGTGGGCTTT-AG
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
* * * * * *
365839 AGGGGTGCCACCTACTTGTATGGGCTTTTAT
1 AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
365870 ATAGGGTTGCCACCAACTTGTGT-GGCTTTGA
1 A-A-GGTTGCCACCAACTTGTGTGGGCTTTGA
365901 AAAAGGTTTC
Statistics
Matches: 196, Mismatches: 47, Indels: 13
0.77 0.18 0.05
Matches are distributed among these distances:
30 24 0.12
31 82 0.42
32 47 0.24
33 40 0.20
34 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (31 bp):
AAGGTTGCCACCAACTTGTGTGGGCTTTGAG
Found at i:365856 original size:63 final size:62
Alignment explanation
Indices: 365619--365908 Score: 280
Period size: 63 Copynumber: 4.6 Consensus size: 62
365609 CATTGGACTT
* *
365619 AAAGG-TGCCACCAACTTGTGTGGGCTTTTGAGAAGGTTACCACCAACTTGTCTGGGCTTTGA
1 AAAGGTTGCCACCAACTTGTGTGGGC-TTTAAGAAGGTTACCACCAACTTGTATGGGCTTTGA
*** * *
365681 AAAGGTTGCCACCAACTTGTGTGGGCTTTAAGAAGGTTACCAGTGACTTCTATAGGCTTTGA
1 AAAGGTTGCCACCAACTTGTGTGGGCTTTAAGAAGGTTACCACCAACTTGTATGGGCTTTGA
** * *** * *
365743 GGAGGTTGCCACCGACTTGTGTGTATTTTAAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAA
1 AAAGGTTGCCACCAACTTGTGTGGGCTTTAAGAA-GGTTACCACCAACTTGTATGGGCTTT-G-A
* * * * * * *
365808 AAAGGTTACCACCGACTTGTGTGGGCTTT-AGAGGGGTGCCACCTACTTGTATGGGCTTTTA
1 AAAGGTTGCCACCAACTTGTGTGGGCTTTAAGAAGGTTACCACCAACTTGTATGGGCTTTGA
* *
365869 TATAGGGTTGCCACCAACTTGTGT-GGCTTTGAAAAAGGTT
1 -A-AAGGTTGCCACCAACTTGTGTGGGCTTT-AAGAAGGTT
365909 TCTCCTCTAG
Statistics
Matches: 183, Mismatches: 37, Indels: 14
0.78 0.16 0.06
Matches are distributed among these distances:
61 1 0.01
62 69 0.38
63 80 0.44
64 9 0.05
65 24 0.13
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (62 bp):
AAAGGTTGCCACCAACTTGTGTGGGCTTTAAGAAGGTTACCACCAACTTGTATGGGCTTTGA
Found at i:366250 original size:66 final size:65
Alignment explanation
Indices: 366074--366993 Score: 856
Period size: 66 Copynumber: 13.9 Consensus size: 65
366064 AAGGAACACG
* * * * * *
366074 GTGCCACAGAGTTGTGGACTTTGAAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAAGAAAAG
1 GTGCCACGGAGTTGTGGAC-TTAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
366139 A
65 A
* * *
366140 -TGCCACGAAGTTATGGACTTAAAAGGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
366204 A
65 A
* * * *
366205 GTGCCATGGAGTTATGGACTTAAAAGAAAATGGTGCCATGCAGTTGTGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAAGAAAA-GGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366270 G
65 A
* * *
366271 GTGCCATGGAGTTGTGGACTTAAAAGGAAAAGATGCCACGGAGTTATGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366336 T
65 A
*
366337 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTATGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366402 G
65 A
* * * *
366403 GTG-CACGAAGTTGTGGACTTAAAGAGAAAAGATGCCAGGGCGTTGTGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAA-AGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366467 G
65 A
* ***
366468 GTGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCATAAAGTTGTGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366533 G
65 A
** * * *
366534 GTGCCATAGAGTTGTTGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGTCTTT-AAAGGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAA-AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAA
*
366598 GA
64 AA
** * * * *
366600 -TGCCACAAAGCTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTAAAAAGAAC
1 GTGCCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA-
366663 AAAA
62 AAAA
* * * ***
366667 -TGCCAAGGAGTTTTGGGCTTTGAAAAGAAAAAGGTGCCATTAAGTTGTGGAG--TT-AAAAGGA
1 GTGCCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTGCCACGGAGTTGTGG-GCTTTGAAAA-GA
*
366728 ACAAA
61 AAAAA
* * * * ** ** *
366733 GTGCCATGGAGTTGTGGTCTTTGAAGGAAAAAATGCCACAAAGTTATGGGCTTTGAAAAGAAAAA
1 GTGCCACGGAGTTGTGGAC-TTAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAA
*
366798 G
65 A
* * * *
366799 GTGCGACGGAGTTGTGGACTTAAAAGGAATAAGGTGCCACGAAGTTGTGGACTTTG-AAGGAAAA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAA-AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAA
*
366863 GA
64 AA
* * *
366865 -TGTCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCT-TGGGCTTTGAAAAGAA
1 GTGCCACGGAGTTGTGGAC-TT-AAAAG-AAAAGGTGCCACGGAGT-TGTGGGCTTTGAAAAGAA
366928 AAAA
62 AAAA
* * * * * *
366932 GTGCCACGAAGTTGTGGACTTAAAAGGAACAAAGTGCCGCGGAGTAGTGGTCTTCGAAAAGA
1 GTGCCACGGAGTTGTGGACTTAAAA-GAA-AAGGTGCCACGGAGTTGTGGGCTTTGAAAAGA
366994 TATGCCACTC
Statistics
Matches: 723, Mismatches: 101, Indels: 59
0.82 0.11 0.07
Matches are distributed among these distances:
64 5 0.01
65 167 0.23
66 367 0.51
67 168 0.23
68 16 0.02
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.22
Consensus pattern (65 bp):
GTGCCACGGAGTTGTGGACTTAAAAGAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAAAAAA
Found at i:366472 original size:99 final size:99
Alignment explanation
Indices: 366038--366993 Score: 763
Period size: 99 Copynumber: 9.6 Consensus size: 99
366028 GCTTTAGAGG
* * * * * * * *
366038 AAGATGCCATGAAGTTGTGGGCTTAAAAGGAACACGGTGCCACAGAGTTGTGGACTTTG--AAGG
1 AAGATGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGA
* *
366101 AAAAGATGCCAC-AGAGTTGTGGGCTTTGAAAAGAA
65 AAAAGGTGCCACGA-AGTTGTGGACTTTGAAAAGAA
* * * *
366136 AAGATGCCACGAAGTTATGGACTTAAAAGGAAAAGATGCCACGGAGTTGTGGGCTTTGAAAAGAA
1 AAGATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
* * * *
366201 AAAAGTGCCATGGAGTTATGGAC-TT-AAAAGAA
66 AAAGGTGCCACGAAGTTGTGGACTTTGAAAAGAA
* * * * * *
366233 AATGGTGCCATGCAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCATGGAGTTGTGGAC-TT-AAAA
1 AA-GATGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
* * * * *
366296 GGAAAAGATGCCACGGAGTTATGGGCTTTGAAAAGAA
63 GAAAAAGGTGCCACGAAGTTGTGGACTTTGAAAAGAA
* *
366333 AA-ATGTGCCACGGAGTTGTGGACTTAAAAGGAAAAGGTGCCACGGAGTTATGGGCTTTGAAAAG
1 AAGA--TGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG
366397 AAAAAGGTG-CACGAAGTTGTGGAC-TT-AAAGAGAA
64 AAAAAGGTGCCACGAAGTTGTGGACTTTGAAA-AGAA
* * * *
366431 AAGATGCCAGGGCGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAAG
1 AAGATGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG
* * ** *
366494 GAAAAGATGCCATAAAGTTGTGGGCTTTGAAAAGAAA
64 AAAAAGGTGCCACGAAGTTGTGGACTTTGAAAAG-AA
* ** * * * *
366531 AAGGTGCCATAGAGTTGTTGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGTCTTT--AAAGG
1 AAGATGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGA
* * * *
366594 AAAAGATGCCACAAAGCTGTGGGCTTTGAAAAGAAA
65 AAAAGGTGCCACGAAGTTGTGGACTTTGAAAAG-AA
* * * *
366630 AAGGTGCCACGGAGTTGTGGACTTAAAAAGAACAAA-ATGCCAAGGAGTTTTGGGCTTTGAAAAG
1 AAGATGCCACGGAGTTGTGGACTT-AAAAGAA-AAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG
** *
366694 AAAAAGGTGCCATTAAGTTGTGGA-GTT-AAAAGGAA
64 AAAAAGGTGCCACGAAGTTGTGGACTTTGAAAA-GAA
* * * * * ** *
366729 CAA-AGTGCCATGGAGTTGTGGTCTTTGAAGGAAAAA-ATGCCACAAAGTTATGGGCTTTGAAAA
1 -AAGA-TGCCACGGAGTTGTGGAC-TTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
* *
366792 GAAAAAGGTGCGACGGAGTTGTGGAC-TT-AAAAGGAA
63 GAAAAAGGTGCCACGAAGTTGTGGACTTTGAAAA-GAA
* * ** * * * *
366828 TAAGGTGCCACGAAGTTGTGGACTTTGAAGGAAAAGATGTCACGAAGTTGTGGGCTTTGAAAAGA
1 -AAGATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGA
* *
366893 AAAAGGTGCCACGGAGTCT-TGGGCTTTGAAAAGAA
65 AAAAGGTGCCACGAAGT-TGTGGACTTTGAAAAGAA
* * * * * *
366928 AAAAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAA-GTGCCGCGGAGTAGTGGTCTTCGAAAA
1 AAGA-TGCCACGGAGTTGTGGACTTAAAA-GAA-AAAGGTGCCACGGAGTTGTGGGCTTTGAAAA
366992 GA
63 GA
366994 TATGCCACTC
Statistics
Matches: 701, Mismatches: 118, Indels: 75
0.78 0.13 0.08
Matches are distributed among these distances:
97 63 0.09
98 129 0.18
99 309 0.44
100 145 0.21
101 52 0.07
102 3 0.00
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.22
Consensus pattern (99 bp):
AAGATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAGAA
AAAGGTGCCACGAAGTTGTGGACTTTGAAAAGAA
Found at i:366967 original size:33 final size:31
Alignment explanation
Indices: 366050--366981 Score: 612
Period size: 34 Copynumber: 28.3 Consensus size: 31
366040 GATGCCATGA
* ** *
366050 AGTTGTGGGCTTAAAAGGAACACGGTGCCACAG
1 AGTTGTGGACTTAAAA-GAA-AAAGTGCCACGG
** * *
366083 AGTTGTGGACTTTGAAGGAAAAGATGCCACAG
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
* *
366115 AGTTGTGGGCTTTGAAAAG-AAAAGATGCCACGA
1 AGTTGTGGAC-TT-AAAAGAAAAAG-TGCCACGG
* *
366148 AGTTATGGACTTAAAAGGAAAAGATGCCACGG
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
* *
366180 AGTTGTGGGCTTTGAAAAGAAAAAAGTGCCATGG
1 AGTTGTGGAC-TT-AAAAG-AAAAAGTGCCACGG
* * * *
366214 AGTTATGGACTTAAAAGAAAATGGTGCCATGC
1 AGTTGTGGACTTAAAAGAAAA-AGTGCCACGG
* *
366246 AGTTGTGGGCTTTGAAAAGAAAAAGGTGCCATGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
*
366280 AGTTGTGGACTTAAAAGGAAAAGATGCCACGG
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
* *
366312 AGTTATGGGCTTTGAAAAGAAAAATGTGCCACGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
*
366346 AGTTGTGGACTTAAAAGGAAAAGGTGCCACGG
1 AGTTGTGGACTTAAAA-GAAAAAGTGCCACGG
* * *
366378 AGTTATGGGCTTTGAAAAGAAAAAGGTG-CACGA
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
*
366411 AGTTGTGGACTT-AAAGAGAAAAGATGCCAGGG
1 AGTTGTGGACTTAAAAGA-AAAAG-TGCCACGG
* *
366443 CGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* ***
366477 AGTTGTGGACTTAAAAGGAAAAGATGCCATAA
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
* **
366509 AGTTGTGGGCTTTGAAAAGAAAAAGGTGCCATAG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* *
366543 AGTTGTTGACTTAAAAGGAACAAGGTGCCACGG
1 AGTTGTGGACTTAAAA-GAA-AAAGTGCCACGG
* * * **
366576 AGTTGTGGTCTTTAAAGGAAAAGATGCCACAA
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
* *
366608 AGCTGTGGGCTTTGAAAAGAAAAAGGTGCCACGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* *
366642 AGTTGTGGACTTAAAAAGAACAAAATGCCAAGG
1 AGTTGTGGACTT-AAAAGAA-AAAGTGCCACGG
* * ***
366675 AGTTTTGGGCTTTGAAAAGAAAAAGGTGCCATTA
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* *
366709 AGTTGTGGAGTTAAAAGGAACAAAGTGCCATGG
1 AGTTGTGGACTTAAAA-GAA-AAAGTGCCACGG
* * * * **
366742 AGTTGTGGTCTTTGAAGGAAAAAATGCCACAA
1 AGTTGTGGAC-TTAAAAGAAAAAGTGCCACGG
* * *
366774 AGTTATGGGCTTTGAAAAGAAAAAGGTGCGACGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* *
366808 AGTTGTGGACTTAAAAGGAATAAGGTGCCACGA
1 AGTTGTGGACTTAAAA-GAA-AAAGTGCCACGG
** * * *
366841 AGTTGTGGACTTTGAAGGAAAAGATGTCACGA
1 AGTTGTGGACTTAAAAGAAAAAG-TGCCACGG
*
366873 AGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGG
1 AGTTGTGGAC-TT-AAAAGAAAAA-GTGCCACGG
* *
366907 AGTCT-TGGGCTTTGAAAAGAAAAAAGTGCCACGA
1 AGT-TGTGGAC-TT-AAAAG-AAAAAGTGCCACGG
*
366941 AGTTGTGGACTTAAAAGGAACAAAGTGCCGCGG
1 AGTTGTGGACTTAAAA-GAA-AAAGTGCCACGG
*
366974 AGTAGTGG
1 AGTTGTGG
366982 TCTTCGAAAA
Statistics
Matches: 717, Mismatches: 127, Indels: 110
0.75 0.13 0.12
Matches are distributed among these distances:
30 6 0.01
31 25 0.03
32 215 0.30
33 211 0.29
34 239 0.33
35 21 0.03
ACGTcount: A:0.36, C:0.12, G:0.31, T:0.22
Consensus pattern (31 bp):
AGTTGTGGACTTAAAAGAAAAAGTGCCACGG
Found at i:367032 original size:33 final size:33
Alignment explanation
Indices: 366995--367068 Score: 85
Period size: 33 Copynumber: 2.2 Consensus size: 33
366985 TCGAAAAGAT
** * *
366995 ATGCCACTCAGTTGTGGTCTTAGAAGAAAAAGG
1 ATGCCACTCAGTCATGGACTTAGAAGAAAAAAG
* *
367028 ATGCCACTGAGTCATGGACTTGGAAGAAAAAAG
1 ATGCCACTCAGTCATGGACTTAGAAGAAAAAAG
*
367061 ATCCCACT
1 ATGCCACT
367069 GAGTAGTGAA
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (33 bp):
ATGCCACTCAGTCATGGACTTAGAAGAAAAAAG
Found at i:367057 original size:133 final size:132
Alignment explanation
Indices: 366075--367060 Score: 490
Period size: 131 Copynumber: 7.5 Consensus size: 132
366065 AGGAACACGG
* * * * ** * *
366075 TGCCAC-AGAGTTGTGGACTTTG--AAGGAAAAGATGCCACAGAGTTGTGGGCTTTGAAAAGAAA
1 TGCCACGA-AGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAA
* * * * * *
366137 AGA-TGCCACGAAGTTATGGACTTAAAAGG-A-AAAGATGCCACGGAGTTGTGGGCTTTGAAAAG
65 AAAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAG-TGCCACGAAGTAGTGGACTTCG--AAG
*
366199 AAAAAA
127 AAAAGA
* * * * * * * ** * *
366205 GTGCCATGGAGTTATGGAC-TT-AAAAGAAAATGGTGCCATGCAGTTGTGGGCTTTGAAAAGAAA
1 -TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAA
* * * * * *
366268 AAGGTGCCATGGAGTTGTGGACTTAAAAGG-A-AAAGATGCCACGGAGTTA-TGGGCTTTGAAAA
65 AAAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAG-TGCCACGAAG-TAGTGGACTTCG--AA
366330 GAAAA-A
126 GAAAAGA
* * * * * *
366336 TGTGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGGTGCCACGGAGTTATGGGCTTTGAAAAGAA
1 --TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAA
* * ** * * *
366399 AAAGGTG-CACGAAGTTGTGGACTT-AAA-GAGA-AAAGATGCCAGGGCGTTGTGGGCTTTGAAA
64 AAAAGTGCCACGAAGTTGTGGACTTAAAAGGA-ACAAAG-TGCCACGAAGTAGTGGACTTCG--A
*
366460 AGAAAAAGG
125 AG-AAAAGA
* * * * *** ** * *
366469 TGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGATGCCATAAAGTTGTGGGCTTTGAAAAGAAAA
1 TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAAA
* * * * * * * **
366532 AGGTGCCA-TAGAGTTGTTGACTTAAAAGGAACAAGGTGCCACGGAGTTGTGGTCTTTAAAGGAA
66 AAGTGCCACGA-AGTTGTGGACTTAAAAGGAACAAAGTGCCACGAAGTAGTGGACTTCGAA-GAA
366596 AAGA
129 AAGA
* * **
366600 TGCCACAAAGCTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTA-AAAAGAACA
1 TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAA-A
* * * * ** * * **
366664 AAA-TGCCAAGGAGTTTTGGGCTTTGAAAA-GAA-AAAGGTGCCATTAAGTTGTGGAGTTAAAAG
65 AAAGTGCCACGAAGTTGTGGAC-TT-AAAAGGAACAAA-GTGCCACGAAGTAGTGGACTTCGAA-
366726 GAACAA-A
126 GAA-AAGA
* * * * * ** * * *
366733 GTGCCATGGAGTTGTGGTCTTTG-AAGGAAAAA-ATGCCACAAAGTTATGGGCTTTGAAAAGAAA
1 -TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAA
* * * * * * *
366796 AAGGTGCGACGGAGTTGTGGACTTAAAAGGAATAAGGTGCCACGAAGTTGTGGACTTTGAAGGAA
65 AAAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAGTGCCACGAAGTAGTGGACTTCGAA-GAA
366861 AAGA
129 AAGA
* * * *
366865 TGTCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCTTGGGCTTTGAAAAGAAAA
1 TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAAA
* * * *
366930 AAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAGTGCCGCGGAGTAGTGGTCTTCGAA-AAGA
66 AAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAGTGCCACGAAGTAGTGGACTTCGAAGAAAA
*
366994 TA
131 GA
** * * * *
366996 TGCCACTCAGTTGTGGTC-TT-AGAAGAAAAAGGATGCCACTGAGTCATGGACTT-G-GAAGAAA
1 TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGG-TGCCACGGAGTCATGGACTTAGAAAAGAAA
367057 AAAG
65 AAAG
367061 ATCCCACTGA
Statistics
Matches: 702, Mismatches: 119, Indels: 71
0.79 0.13 0.08
Matches are distributed among these distances:
128 10 0.01
129 13 0.02
130 25 0.04
131 220 0.31
132 217 0.31
133 189 0.27
134 28 0.04
ACGTcount: A:0.36, C:0.12, G:0.30, T:0.22
Consensus pattern (132 bp):
TGCCACGAAGTTGTGGGCTTTGAAAAGAAAAAGGTGCCACGGAGTCATGGACTTAGAAAAGAAAA
AAGTGCCACGAAGTTGTGGACTTAAAAGGAACAAAGTGCCACGAAGTAGTGGACTTCGAAGAAAA
GA
Found at i:367089 original size:33 final size:33
Alignment explanation
Indices: 367017--367081 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
367007 TGTGGTCTTA
* * *
367017 GAAGAAAAAGGATGCCACTGAGTCATGGACTTG
1 GAAGAAAAAAGATCCCACTGAGTCATGAACTTG
367050 GAAGAAAAAAGATCCCACTGAGT-AGTGAACTT
1 GAAGAAAAAAGATCCCACTGAGTCA-TGAACTT
367082 TTAAGAAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
32 1 0.04
33 27 0.96
ACGTcount: A:0.40, C:0.15, G:0.26, T:0.18
Consensus pattern (33 bp):
GAAGAAAAAAGATCCCACTGAGTCATGAACTTG
Found at i:368336 original size:25 final size:25
Alignment explanation
Indices: 368308--368372 Score: 87
Period size: 25 Copynumber: 2.6 Consensus size: 25
368298 CTTTTTCATT
368308 TTTTGTTTTTTTCTGTGTTTTTTTG
1 TTTTGTTTTTTTCTGTGTTTTTTTG
*
368333 TTTTGTTTTTGTT-TTTGTTTTTTTG
1 TTTTGTTTTT-TTCTGTGTTTTTTTG
*
368358 TTTTTTTTTCTTTCT
1 TTTTGTTTT-TTTCT
368373 TTGACTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
25 31 0.89
26 4 0.11
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (25 bp):
TTTTGTTTTTTTCTGTGTTTTTTTG
Found at i:368341 original size:12 final size:12
Alignment explanation
Indices: 368308--368366 Score: 52
Period size: 13 Copynumber: 4.8 Consensus size: 12
368298 CTTTTTCATT
368308 TTTTGTTTTTT-
1 TTTTGTTTTTTG
*
368319 TCTGTGTTTTTTTG
1 T-TTTG-TTTTTTG
368333 TTTTG-TTTTTG
1 TTTTGTTTTTTG
368344 TTTTTGTTTTTTTG
1 -TTTTG-TTTTTTG
368358 TTTT-TTTTT
1 TTTTGTTTTT
368367 CTTTCTTTGA
Statistics
Matches: 40, Mismatches: 2, Indels: 12
0.74 0.04 0.22
Matches are distributed among these distances:
11 12 0.30
12 8 0.20
13 13 0.32
14 7 0.17
ACGTcount: A:0.00, C:0.02, G:0.14, T:0.85
Consensus pattern (12 bp):
TTTTGTTTTTTG
Found at i:368357 original size:20 final size:20
Alignment explanation
Indices: 368306--368366 Score: 67
Period size: 20 Copynumber: 3.1 Consensus size: 20
368296 CACTTTTTCA
*
368306 TTTTTTGTTTTT-TTCTGTGT
1 TTTTTTGTTTTTGTT-TTTGT
368326 TTTTTTG-TTTTGTTTTTGT
1 TTTTTTGTTTTTGTTTTTGT
368345 TTTTGTT-TTTTTGTTTTT-T
1 TTTT-TTGTTTTTGTTTTTGT
368364 TTT
1 TTT
368367 CTTTCTTTGA
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
19 16 0.43
20 21 0.57
ACGTcount: A:0.00, C:0.02, G:0.13, T:0.85
Consensus pattern (20 bp):
TTTTTTGTTTTTGTTTTTGT
Found at i:373844 original size:20 final size:20
Alignment explanation
Indices: 373804--373859 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 20
373794 CAAAACCTTG
*
373804 AATGTATCAATACAAGAATA
1 AATGTATCGATACAAGAATA
**
373824 AATGTATCGATACAATTATA
1 AATGTATCGATACAAGAATA
373844 AGTATGTATCGATACA
1 A--ATGTATCGATACA
373860 TTTCCTTGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 18 0.58
22 13 0.42
ACGTcount: A:0.46, C:0.11, G:0.12, T:0.30
Consensus pattern (20 bp):
AATGTATCGATACAAGAATA
Found at i:373921 original size:13 final size:13
Alignment explanation
Indices: 373903--373929 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
373893 ATTTTAGGCA
373903 TGTATCGATACAT
1 TGTATCGATACAT
373916 TGTATCGATACAT
1 TGTATCGATACAT
373929 T
1 T
373930 TACTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:374613 original size:61 final size:61
Alignment explanation
Indices: 374499--375174 Score: 582
Period size: 61 Copynumber: 11.1 Consensus size: 61
374489 GCTTTTTAAT
* * * ** * * *
374499 GACTAAAAGGTG-CACCAGCTTATGTGGGCTTT-AAAAAAAAG-GCATCTTGCTTTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCGTCCTGCTCTTTGAG
** * * * * * *
374557 GACTGGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAGTACGTCTTGCTTTTTAAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCGTCCTGCTCTTTGAG
* ** * * * *
374618 GATTGGAATGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAG-GCATCCTACTCTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* * * *
374679 GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAG-GCATCATGCTCTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* * * * ** * *
374740 GATTGAAAGCTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCATCCAACTTTTTAAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCGTCCTGCTCTTTGAG
* * * * * * *
374801 GACTAGAAA-GTGCCAACAACTTCTGTGGGCTTTGAAATGAGAAG-CCATCCTACTCTTTGAG
1 GACTA-AAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* * * * * * * *
374862 GATTCAAAGGTGCCACTAACTTGTGTAGGTTTTGAAAGAAGAAG-GTGTCCTTCTTTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* * * *
374923 GACTAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGTGCGTCCTGCTCTTTAAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCGTCCTGCTCTTTGAG
* * * * ** *
374984 GACTAGAAGGTGCCACCAAATTATGTGGGCTTTGAAAAAAGAAG-GCGTCATGCTCTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* *
375045 GACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAGAA-TGCGTCCTACTCTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCGTCCTGCTCTTTGAG
* * * * * *
375106 GACCAAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGAAAG-GCTTCCTACTTTTTGAG
1 GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAA-GGAAAGTGCGTCCTGCTCTTTGAG
375167 GACTAAAA
1 GACTAAAA
375175 AGATAAAAGG
Statistics
Matches: 509, Mismatches: 96, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
58 10 0.02
59 17 0.03
60 16 0.03
61 451 0.89
62 15 0.03
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (61 bp):
GACTAAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCGTCCTGCTCTTTGAG
Found at i:374677 original size:122 final size:123
Alignment explanation
Indices: 374505--375174 Score: 675
Period size: 122 Copynumber: 5.5 Consensus size: 123
374495 TAATGACTAA
* * * * * * **
374505 AAGGTG-CACCAGCTTATGTGGGCTTT-AAAA-AAAAGGCATCTTGCTTTTTGAGGACTGGAAGG
1 AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTTTTTGAGGACTAAAAGG
* * * * * *
374567 TGCCACAAACTTGTGTGGGCTTTGAAAGGA-AAGTACGTCTTGCTTTTTAAGGATTGG
66 TGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATTAG
* * *
374624 AATGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAGGACTTAAAGG
1 AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTTTTTGAGGACTAAAAGG
* * * *
374689 TGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAG-GCATCATGCTCTTTGAGGATT-G
66 TGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATTAG
* * * *
374745 AAAGCTGCCACCAACTTGTGTAGGCTTTGAAAGGA-AAGTGCATCCAACTTTTTAAGGACTAGAA
1 -AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAG-GCATCCTACTTTTTGAGGACTA-AA
* * * * * *
374809 A-GTGCCAACAACTTCTGTGGGCTTTGAAATGAGAAG-CCATCCTACTCTTTGAGGATTCA-
63 AGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATT-AG
* * ** * *
374868 AAGGTGCCACTAACTTGTGTAGGTTTTG-AAAGAAGAAGGTGTCCTTCTTTTTGAGGACTAAAAA
1 AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAG-AGAAGGCATCCTACTTTTTGAGGACTAAAAG
* * *
374932 GTGCCACCAACTTGTGTGGGCTTTGAAA-GAAAAGTGCGTCCTGCTCTTTAAGGACTAG
65 GTGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATTAG
* * * * * * * * *
374990 AAGGTGCCACCAAATTATGTGGGCTTTGAAAAAAGAAGGCGTCATGCTCTTTGAGGACTGAAAGG
1 AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTTTTTGAGGACTAAAAGG
* * ** *
375055 TGCCACCAACTTGTGTAGGCTTTGAAAGGAGAA-TGCGTCCTACTCTTTGAGGACCAA
66 TGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATTAG
* * *
375112 AAGGTGCCACCAACTTGTGTGGGCTTT-AAAAGGGAAAGGCTTCCTACTTTTTGAGGACTAAAA
1 AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAG-AAGGCATCCTACTTTTTGAGGACTAAAA
375175 AGATAAAAGG
Statistics
Matches: 457, Mismatches: 77, Indels: 31
0.81 0.14 0.05
Matches are distributed among these distances:
119 5 0.01
120 17 0.04
121 25 0.05
122 394 0.86
123 16 0.04
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (123 bp):
AAGGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTTTTTGAGGACTAAAAGG
TGCCACCAACTTGTGTGGGCTTTGAAAGGAGAAGTGCGTCCTGCTCTTTGAGGATTAG
Found at i:374763 original size:183 final size:183
Alignment explanation
Indices: 374499--375176 Score: 790
Period size: 183 Copynumber: 3.7 Consensus size: 183
374489 GCTTTTTAAT
* * * * * * *
374499 GACTAAAAGGTG-CACCAGCTTATGTGGGCTTTAAAA--AAAAGGCATCTTGCTTTTTGAGGACT
1 GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACT
** * * * * *
374561 GGAAGGTGCCACAAACTTGTGTGGGCTTTGAAAGGAAAGTACGTCTTGCTTTTTAAGGATTGGAA
66 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGCGTCCTGCTTTTTAAGGACTAGAA
* * *
374626 TGTGCCACCAACTTGTGTAGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAG
131 AGTGCCACCAACTTATGTGGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAG
* *
374679 GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCATGCTCTTTGAGGATT
1 GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACT
* * * * **
374744 GAAAGCTGCCACCAACTTGTGTAGGCTTTGAAAGGAAAGTGCATCCAACTTTTTAAGGACTAGAA
66 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGCGTCCTGCTTTTTAAGGACTAGAA
* * * *
374809 AGTGCCAACAACTTCTGTGGGCTTTGAAATGAGAAGCCATCCTACTCTTTGAG
131 AGTGCCACCAACTTATGTGGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAG
* * * * ** * *
374862 GA-TTCAAAGGTGCCACTAACTTGTGTAGGTTTTGAAAGAAGAAGGTGTCCTTCTTTTTGAGGAC
1 GACTT-AAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGAC
* * *
374926 TAAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGAAAAGTGCGTCCTGCTCTTTAAGGACTAGA
65 TAAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGCGTCCTGCTTTTTAAGGACTAGA
* * * * * *
374991 AGGTGCCACCAAATTATGTGGGCTTTGAAAAAAGAAGGCGTCATGCTCTTTGAG
130 AAGTGCCACCAACTTATGTGGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAG
* * * * * *
375045 GACTGAAAGGTGCCACCAACTTGTGTAGGCTTTGAAAGGAGAATGCGTCCTACTCTTTGAGGACC
1 GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACT
* * * * *
375110 AAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGGAAAG-GCTTCCTACTTTTTGAGGACTAAA
66 AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAA-GGAAAGTGCGTCCTGCTTTTTAAGGACTAGA
375174 AAG
130 AAG
375177 ATAAAAGGTT
Statistics
Matches: 420, Mismatches: 72, Indels: 9
0.84 0.14 0.02
Matches are distributed among these distances:
180 11 0.03
181 21 0.05
182 2 0.00
183 380 0.90
184 6 0.01
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (183 bp):
GACTTAAAGGTGCCACCAACTTGTGTAGGCTTTAAAAGGAGAAGGCATCCTGCTCTTTGAGGACT
AAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGAAAGTGCGTCCTGCTTTTTAAGGACTAGAA
AGTGCCACCAACTTATGTGGGCTTTGAAAAGAGAAGGCATCCTACTCTTTGAG
Found at i:375353 original size:21 final size:21
Alignment explanation
Indices: 375327--375397 Score: 115
Period size: 21 Copynumber: 3.4 Consensus size: 21
375317 GATGCATGGT
375327 GATGCAAGTGCCTAACTAGGC
1 GATGCAAGTGCCTAACTAGGC
375348 GATGCAAGTGCCTAACTAGGC
1 GATGCAAGTGCCTAACTAGGC
* *
375369 GATGTAAGTGCCTAACTAAGC
1 GATGCAAGTGCCTAACTAGGC
*
375390 GATACAAG
1 GATGCAAG
375398 GATAATGATT
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (21 bp):
GATGCAAGTGCCTAACTAGGC
Found at i:379367 original size:20 final size:20
Alignment explanation
Indices: 379341--379395 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 20
379331 CTGCCAGTTT
*
379341 CATGTATCGATACAATTG-T
1 CATGTATCGATACAATTGAG
379360 CTATGTATCGATACAA-TGAG
1 C-ATGTATCGATACAATTGAG
379380 CATGTATCGATACAAT
1 CATGTATCGATACAAT
379396 GTATCGATAC
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
19 17 0.53
20 15 0.47
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAG
Found at i:379399 original size:13 final size:13
Alignment explanation
Indices: 379381--379406 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
379371 TACAATGAGC
379381 ATGTATCGATACA
1 ATGTATCGATACA
379394 ATGTATCGATACA
1 ATGTATCGATACA
379407 GAGCAGTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:380036 original size:22 final size:22
Alignment explanation
Indices: 379944--380036 Score: 68
Period size: 22 Copynumber: 4.2 Consensus size: 22
379934 TTTCGTTTTA
*
379944 CTCCCCCTTAATTAAAGAATTT
1 CTCCCCCTTAATCAAAGAATTT
* * *
379966 CTCCCCTTTTATCAAATTTATATCTT
1 CTCCCCCTTAATCAAA--GA-AT-TT
*
379992 CTCCCTC-T--T-AAAGAATTTT
1 CTCCCCCTTAATCAAAGAA-TTT
380011 CTCCCCCTTAATCAAAGAATTT
1 CTCCCCCTTAATCAAAGAATTT
380033 CTCC
1 CTCC
380037 TCTTTCTCCC
Statistics
Matches: 54, Mismatches: 8, Indels: 18
0.68 0.10 0.22
Matches are distributed among these distances:
19 9 0.17
20 3 0.06
22 24 0.44
23 7 0.13
24 1 0.02
25 3 0.06
26 7 0.13
ACGTcount: A:0.27, C:0.30, G:0.03, T:0.40
Consensus pattern (22 bp):
CTCCCCCTTAATCAAAGAATTT
Found at i:388110 original size:13 final size:13
Alignment explanation
Indices: 388069--388117 Score: 63
Period size: 13 Copynumber: 4.2 Consensus size: 13
388059 CCGTTACAAG
388069 CAATGTATCGATA
1 CAATGTATCGATA
388082 CAAT-T-TC-AT-
1 CAATGTATCGATA
388091 C-ATGTATCGATA
1 CAATGTATCGATA
388103 CAATGTATCGATA
1 CAATGTATCGATA
388116 CA
1 CA
388118 TATAGTGATA
Statistics
Matches: 31, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
8 2 0.06
9 2 0.06
10 4 0.13
11 4 0.13
12 2 0.06
13 17 0.55
ACGTcount: A:0.37, C:0.18, G:0.12, T:0.33
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:388173 original size:20 final size:19
Alignment explanation
Indices: 388146--388203 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 19
388136 ACTGCCAGTT
388146 TCATGTATCGATACAATTG
1 TCATGTATCGATACAATTG
*
388165 TCTATGTATCAATACAA-TG
1 TC-ATGTATCGATACAATTG
*
388184 AGCATGTATCGATAC-ATTG
1 -TCATGTATCGATACAATTG
388203 T
1 T
388204 ATAGATACAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
18 1 0.03
19 17 0.53
20 14 0.44
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (19 bp):
TCATGTATCGATACAATTG
Found at i:397340 original size:52 final size:52
Alignment explanation
Indices: 397192--397320 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
397182 CGAAATATGA
397192 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
397244 AAATTTGCTTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
397296 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
397321 AAGATCAGTG
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 74 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:397347 original size:13 final size:13
Alignment explanation
Indices: 397329--397353 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
397319 CAAAGATCAG
397329 TGTATCGATACAA
1 TGTATCGATACAA
397342 TGTATCGATACA
1 TGTATCGATACA
397354 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:397425 original size:19 final size:20
Alignment explanation
Indices: 397397--397449 Score: 72
Period size: 20 Copynumber: 2.7 Consensus size: 20
397387 TAGCTTACAT
*
397397 TGTATTGATACAAAAC-TTA
1 TGTATCGATACAAAACTTTA
*
397416 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAACTTTA
*
397436 TGTATCGACACAAA
1 TGTATCGATACAAA
397450 TCGTTGAAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 14 0.48
20 15 0.52
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (20 bp):
TGTATCGATACAAAACTTTA
Found at i:397880 original size:26 final size:26
Alignment explanation
Indices: 397844--397896 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
397834 GTCTTATCTC
397844 AGACTTTCAAGTTCCTCCTTGAGGTG
1 AGACTTTCAAGTTCCTCCTTGAGGTG
397870 AGACTTTCAAGTTCCTCCTTGAGGTG
1 AGACTTTCAAGTTCCTCCTTGAGGTG
397896 A
1 A
397897 TCTTTTTCTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.34
Consensus pattern (26 bp):
AGACTTTCAAGTTCCTCCTTGAGGTG
Found at i:401541 original size:51 final size:51
Alignment explanation
Indices: 401466--401612 Score: 168
Period size: 51 Copynumber: 2.9 Consensus size: 51
401456 CTCCTCGATG
* * * *
401466 AAAAATTTAATATTTTAGAGATAAAAACGGGGTTGGAGTATCCCCAACAGT
1 AAAAAATTGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCAACAGT
* *** **
401517 AAAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCCTTGATGGT
1 AAAAAATTGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCAACAGT
* * * *
401568 GAAAAGTTGATATTTTGGAAATAAAATCTGGGTTGGAGTATCCCC
1 AAAAAATTGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCC
401613 TCGAAAACCA
Statistics
Matches: 79, Mismatches: 17, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 79 1.00
ACGTcount: A:0.37, C:0.09, G:0.23, T:0.31
Consensus pattern (51 bp):
AAAAAATTGATATTTTGGAAATAAAAACGGGGTTGGAGTATCCCCAACAGT
Found at i:401667 original size:29 final size:30
Alignment explanation
Indices: 401625--401682 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 30
401615 GAAAACCATG
401625 GGGTTGGAGTATCCCCGATGGT-GAAAATA
1 GGGTTGGAGTATCCCCGATGGTAGAAAATA
401654 GGGTTGGAGTATCCCCGATGGTAGAAAAT
1 GGGTTGGAGTATCCCCGATGGTAGAAAAT
401683 TATTGTTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 22 0.79
30 6 0.21
ACGTcount: A:0.28, C:0.14, G:0.34, T:0.24
Consensus pattern (30 bp):
GGGTTGGAGTATCCCCGATGGTAGAAAATA
Found at i:401732 original size:50 final size:50
Alignment explanation
Indices: 401648--401767 Score: 138
Period size: 50 Copynumber: 2.4 Consensus size: 50
401638 CCCGATGGTG
* ** *
401648 AAAAT-AGGGTTGGAGTATCCCCGATGGTAGAAAAT-TATTGTTTTAGAAAT
1 AAAATCAGGGTTAGAGTAT-CTTGATGGTAGAAAATCGA-TGTTTTAGAAAT
*
401698 AAAATCGGGGTTAGAGTATCTTGATGGT-GAAAAATCGATGTTTTAGAAAT
1 AAAATCAGGGTTAGAGTATCTTGATGGTAG-AAAATCGATGTTTTAGAAAT
*
401748 AAAATCAGGGTTGGAGTATC
1 AAAATCAGGGTTAGAGTATC
401768 CCCTCAAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
49 1 0.02
50 47 0.78
51 12 0.20
ACGTcount: A:0.36, C:0.07, G:0.26, T:0.31
Consensus pattern (50 bp):
AAAATCAGGGTTAGAGTATCTTGATGGTAGAAAATCGATGTTTTAGAAAT
Found at i:401784 original size:158 final size:160
Alignment explanation
Indices: 401495--401811 Score: 435
Period size: 158 Copynumber: 2.0 Consensus size: 160
401485 GATAAAAACG
* *
401495 GGGTTGGAGTATCCCCAACAGTAAAAAATTGATATTTTGGAAATAAAAATGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCAACAGTAAAAAATTGATATTTTAGAAATAAAAATGGGGTTAGAGTATCC
* * * * * *
401560 TTGATGGTGAAAAGTTGATATTTTGGAAATAAAATCTGGGTTGGAGTATCCCCTCGAAAACCATG
66 TTGATGGTGAAAAATCGATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAACAATG
*
401625 GGGTTGGAGTATCCCCGATGGT-GAAAATA
131 GGATTGGAGTATCCCCGATGGTGGAAAATA
* ** * *
401654 GGGTTGGAGTATCCCCGATGGTAGAAAATT-ATTGTTTTAGAAAT-AAAATCGGGGTTAGAGTAT
1 GGGTTGGAGTATCCCCAACAGTAAAAAATTGA-TATTTTAGAAATAAAAAT-GGGGTTAGAGTAT
* *
401717 -CTTGATGGTGAAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAATAA
64 CCTTGATGGTGAAAAATCGATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAACAA
*
401781 TGGGATTGGAGTATCCCTGATGGTGGAAAAT
129 TGGGATTGGAGTATCCCCGATGGTGGAAAAT
401812 CGGTGTTTTA
Statistics
Matches: 138, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
158 84 0.61
159 54 0.39
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (160 bp):
GGGTTGGAGTATCCCCAACAGTAAAAAATTGATATTTTAGAAATAAAAATGGGGTTAGAGTATCC
TTGATGGTGAAAAATCGATATTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAAAAACAATG
GGATTGGAGTATCCCCGATGGTGGAAAATA
Found at i:401802 original size:79 final size:79
Alignment explanation
Indices: 401711--401909 Score: 301
Period size: 79 Copynumber: 2.5 Consensus size: 79
401701 ATCGGGGTTA
* *
401711 GAGTAT-CTTGATGGTGAAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAA
1 GAGTATCCCTGATGGTGGAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAA
*
401775 AAATAATGGGATTG
66 AAATAACGGGATTG
* * **
401789 GAGTATCCCTGATGGTGGAAAATCGGTGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCTTCGG
1 GAGTATCCCTGATGGTGGAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAA
*
401854 AAATAACGGGGTTG
66 AAATAACGGGATTG
* *
401868 GAGTATCCCCGATGGTGGAAAATCGATATTTTAGAAATAAAA
1 GAGTATCCCTGATGGTGGAAAATCGATGTTTTAGAAATAAAA
401910 CATCAATGAA
Statistics
Matches: 109, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
78 6 0.06
79 103 0.94
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (79 bp):
GAGTATCCCTGATGGTGGAAAATCGATGTTTTAGAAATAAAATCAGGGTTGGAGTATCCCCTCAA
AAATAACGGGATTG
Found at i:407972 original size:20 final size:21
Alignment explanation
Indices: 407920--407974 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
407910 TTCTACAATT
407920 TGTATCGATACAAACAGTAAA
1 TGTATCGATACAAACAGTAAA
* * *
407941 CGTAGT-GATACATA-AGTGAA
1 TGTA-TCGATACAAACAGTAAA
407961 TGTATCGATACAAA
1 TGTATCGATACAAA
407975 ACCACCCTGC
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
19 1 0.04
20 15 0.56
21 10 0.37
22 1 0.04
ACGTcount: A:0.44, C:0.13, G:0.18, T:0.25
Consensus pattern (21 bp):
TGTATCGATACAAACAGTAAA
Found at i:408054 original size:22 final size:20
Alignment explanation
Indices: 408026--408074 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
408016 CAAATGCAAT
408026 GATACATGCTTTCAATTGTATC
1 GATACAT-CTTTC-ATTGTATC
*
408048 GATACATTTTTCATTGTATC
1 GATACATCTTTCATTGTATC
*
408068 AATACAT
1 GATACAT
408075 TATGGGTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 14 0.56
21 4 0.16
22 7 0.28
ACGTcount: A:0.31, C:0.16, G:0.10, T:0.43
Consensus pattern (20 bp):
GATACATCTTTCATTGTATC
Found at i:408065 original size:20 final size:21
Alignment explanation
Indices: 408035--408075 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 21
408025 TGATACATGC
*
408035 TTTCAATTGTATCGATACATT
1 TTTCAATTGTATCAATACATT
408056 TTTC-ATTGTATCAATACATT
1 TTTCAATTGTATCAATACATT
408076 ATGGGTTTTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.29, C:0.15, G:0.07, T:0.49
Consensus pattern (21 bp):
TTTCAATTGTATCAATACATT
Found at i:410444 original size:75 final size:75
Alignment explanation
Indices: 410360--410881 Score: 450
Period size: 75 Copynumber: 7.0 Consensus size: 75
410350 CTTTCATCTC
* * * * *
410360 GGGGATACTCTAACCCCATCAAATTCGAGGGGATACTCTAACCCCGCTTTTATTTCCAAAATATT
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT
*
410425 TAATTTTCTT
66 AAATTTTCTT
* * * ** * *
410435 GGGGATACTCCAACCTCGTT-ATTTCTAGGGGATACTCCAACCCTATTGTCATTTTCCAAAATAT
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTA-TTTCCAAAATAT
410499 TAAATTTTCTT
65 TAAATTTTCTT
** * ** * * * *
410510 AAGAATACTCCAACCCTGTTATTTTCGAGGGGATACTCTAACCCCGTTGTTATTTCCAAAATATA
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT
*
410575 AAATTTTTCTC
66 AAA-TTTTCTT
*** * * * *
410586 ACAGATACTCCAACCCTATTATTTTCGAGGGGATACTCCATCCCCGTTTTTATTTTCAAAATATT
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT
*
410651 --A----CTC
66 AAATTTTCTT
* * * * * * *
410655 GTGGATATTCCAACCTCATTATTTTCGAGGGGATACACTTAACCCCGTTTTTATTTTCAAAATAT
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTC-CAACCCCGTTTTTATTTCCAAAATAT
410720 TAAAATTTTCATTGT
65 T-AAATTTTC--T-T
* * * *
410735 GGGGATACTCGAACCCCATCAATTCCGAGGGGATACTCCAACCCTGTTTTTATTTCCAAAATATT
1 GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT
*
410800 AAATTTTTTT
66 AAATTTTCTT
* * * * * * *
410810 CGGGGGTACTCCAACCCC-GTAATTTTCGA-GGGATACTCCAATCGCGCTCTTATTTCAAAAATA
1 -GGGGATACTCCAACCCCATTAA-TTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATA
410873 TTAAATTTT
64 TTAAATTTT
410882 TCATCTTGAG
Statistics
Matches: 363, Mismatches: 68, Indels: 32
0.78 0.15 0.07
Matches are distributed among these distances:
69 34 0.09
70 25 0.07
73 1 0.00
74 24 0.07
75 108 0.30
76 108 0.30
77 1 0.00
78 7 0.02
79 25 0.07
80 30 0.08
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (75 bp):
GGGGATACTCCAACCCCATTAATTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAATATT
AAATTTTCTT
Found at i:410594 original size:76 final size:75
Alignment explanation
Indices: 410356--410881 Score: 442
Period size: 76 Copynumber: 7.0 Consensus size: 75
410346 CGATCTTTCA
* * * ** * *
410356 TCTCGGGGATACTCTAACCCCATCAAATTCGAGGGGATACTCTAACCCCGCTTTTATTTCCAAAA
1 TCTCGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAA
*
410421 TATTTAATTT
66 TATTAAATTT
* * * ** * *
410431 TCTTGGGGATACTCCAA-CCTCGTTA-TTTCTAGGGGATACTCCAACCCTATTGTCATTTTCCAA
1 TCTCGGGGATACTCCAACCCT-ATTATTTTCGAGGGGATACTCCAACCCCGTTTTTA-TTTCCAA
410494 AATATTAAATTT
64 AATATTAAATTT
*** * * * *
410506 TCTTAAGAATACTCCAACCCTGTTATTTTCGAGGGGATACTCTAACCCCGTTGTTATTTCCAAAA
1 TCTCGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAA
*
410571 TATAAAATTTT
66 TATTAAA-TTT
*** * *
410582 TCTCACAGATACTCCAACCCTATTATTTTCGAGGGGATACTCCATCCCCGTTTTTATTTTCAAAA
1 TCTCGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAA
410647 TATT--A---
66 TATTAAATTT
* * * * *
410652 -CTCGTGGATATTCCAA-CCTCATTATTTTCGAGGGGATACACTTAACCCCGTTTTTATTTTCAA
1 TCTCGGGGATACTCCAACCCT-ATTATTTTCGAGGGGATACTC-CAACCCCGTTTTTATTTCCAA
410715 AATATTAAAATTT
64 AATATT-AAATTT
* * * * * * *
410728 TCATTGTGGGGATACTCGAACCCCATCAATTCCGAGGGGATACTCCAACCCTGTTTTTATTTCCA
1 TC--T-CGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCA
410793 AAATATTAAATTTT
63 AAATATTAAA-TTT
* * ** * * * * * *
410807 TTTCGGGGGTACTCCAACCCCGTAATTTTCGA-GGGATACTCCAATCGCGCTCTTATTTCAAAAA
1 TCTCGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAA
410871 TATTAAATTT
66 TATTAAATTT
410881 T
1 T
410882 TCATCTTGAG
Statistics
Matches: 366, Mismatches: 66, Indels: 39
0.78 0.14 0.08
Matches are distributed among these distances:
68 3 0.01
69 32 0.09
70 25 0.07
73 1 0.00
74 29 0.08
75 101 0.28
76 112 0.31
77 2 0.01
78 3 0.01
79 29 0.08
80 27 0.07
81 2 0.01
ACGTcount: A:0.28, C:0.23, G:0.13, T:0.36
Consensus pattern (75 bp):
TCTCGGGGATACTCCAACCCTATTATTTTCGAGGGGATACTCCAACCCCGTTTTTATTTCCAAAA
TATTAAATTT
Found at i:410685 original size:69 final size:70
Alignment explanation
Indices: 410589--410721 Score: 207
Period size: 69 Copynumber: 1.9 Consensus size: 70
410579 TTTTCTCACA
* *
410589 GATACTCCAACCCTATTATTTTCGAGGGGATACTC-CATCCCCGTTTTTATTTTCAAAATATTAC
1 GATACTCCAACCCTATTATTTTCGAGGGGATACACTCAACCCCGTTTTTATTTTCAAAATATTAC
410653 TCGTG
66 TCGTG
* *
410658 GATATTCCAA-CCTCATTATTTTCGAGGGGATACACTTAACCCCGTTTTTATTTTCAAAATATTA
1 GATACTCCAACCCT-ATTATTTTCGAGGGGATACACTCAACCCCGTTTTTATTTTCAAAATATTA
410722 AAATTTTCAT
Statistics
Matches: 58, Mismatches: 4, Indels: 3
0.89 0.06 0.05
Matches are distributed among these distances:
68 3 0.05
69 29 0.50
70 26 0.45
ACGTcount: A:0.27, C:0.23, G:0.12, T:0.38
Consensus pattern (70 bp):
GATACTCCAACCCTATTATTTTCGAGGGGATACACTCAACCCCGTTTTTATTTTCAAAATATTAC
TCGTG
Found at i:411153 original size:22 final size:24
Alignment explanation
Indices: 411106--411155 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
411096 CATCCATCCT
**
411106 TTTTATGTATTTTTGTGTGCGTTA
1 TTTTATGTAAATTTGTGTGCGTTA
411130 TTTTATGTAAATTTGT-T-CGTTA
1 TTTTATGTAAATTTGTGTGCGTTA
411152 TTTT
1 TTTT
411156 CTTTTCTGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 9 0.38
23 1 0.04
24 14 0.58
ACGTcount: A:0.16, C:0.04, G:0.16, T:0.64
Consensus pattern (24 bp):
TTTTATGTAAATTTGTGTGCGTTA
Found at i:419687 original size:19 final size:19
Alignment explanation
Indices: 419663--419727 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
419653 AGCGATACAT
419663 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
419682 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
* *
419695 TGTATCGAAACAACACTTA
1 TGTATCGATACAAAACTTA
419714 TGTATCGATACAAA
1 TGTATCGATACAAA
419728 TCGTTGAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 12
0.71 0.06 0.23
Matches are distributed among these distances:
13 10 0.27
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.62
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:419696 original size:32 final size:32
Alignment explanation
Indices: 419655--419725 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
419645 AGCTTCGTAG
*
419655 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGAAACAAAACTTATGTAT
*
419687 CGATACATTGTATCGAAACAACACTTATGTAT
1 CGATACATTGTATCGAAACAAAACTTATGTAT
419719 CGATACA
1 CGATACA
419726 AATCGTTGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (32 bp):
CGATACATTGTATCGAAACAAAACTTATGTAT
Found at i:421224 original size:21 final size:20
Alignment explanation
Indices: 421176--421229 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
421166 CATTACAAGC
*
421176 ATGTATCGATACATTCACTT
1 ATGTATCGATACATTAACTT
*
421196 ATGTATCGATATATTAACTT
1 ATGTATCGATACATTAACTT
*
421216 GTAGTATCGATACA
1 AT-GTATCGATACA
421230 AATTATAGAA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 19 0.66
21 10 0.34
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (20 bp):
ATGTATCGATACATTAACTT
Found at i:426468 original size:3 final size:3
Alignment explanation
Indices: 426460--426506 Score: 94
Period size: 3 Copynumber: 15.7 Consensus size: 3
426450 TCTTTGCTTT
426460 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
426507 CTTTGCATTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 44 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:427937 original size:22 final size:23
Alignment explanation
Indices: 427912--427960 Score: 73
Period size: 23 Copynumber: 2.2 Consensus size: 23
427902 TAGAACAAAA
*
427912 AAAAT-AACAGACAAATTTACAC
1 AAAATAAACACACAAATTTACAC
*
427934 AAAATAAACACACAAATTTACAT
1 AAAATAAACACACAAATTTACAC
427957 AAAA
1 AAAA
427961 GGAGGGACGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 5 0.21
23 19 0.79
ACGTcount: A:0.63, C:0.16, G:0.02, T:0.18
Consensus pattern (23 bp):
AAAATAAACACACAAATTTACAC
Found at i:428271 original size:79 final size:79
Alignment explanation
Indices: 428188--428748 Score: 450
Period size: 79 Copynumber: 7.1 Consensus size: 79
428178 TATTTTGGAG
* * * * *
428188 ATAAAAACGGGGTTGGAGTATCCCCTTAGAAATAACAGGATTGAAGTATCCCTAATGGTGGAAAA
1 ATAAAAACAGGGTTAGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAA
* *
428253 TCAATGTTTTGGAA
66 TCGATGTTTTAGAA
* * * ** * *
428267 AT-AAAACCGAGGTTAGAGTATTCCCTCAGAAATAAC-GAGGTTGGAGTATCCCCAATTGTGAAA
1 ATAAAAACAG-GGTTAGAGTATCCCCTTAGAAATAACAG-GGTTGGAGTATCCCTGATGGTGGAA
428330 AATCGATGTTTTAGAA
64 AATCGATGTTTTAGAA
** * * * ** *
428346 ATAAAGTC-GAGGTTGGAGTATCCCCTTAGGAATAACGGGGTTGGAGTAT-CCTCGATTATGAAA
1 ATAAAAACAG-GGTTAGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCT-GATGGTGGAA
* *
428409 AATTGATGTTTTAAAA
64 AATCGATGTTTTAGAA
* ** * * * * *
428425 AT-AAAGCTAGGGTTAGAGTATCTTCTCAGAAATAGCGGGGTTGGGGTATCCCTGATGGTTGAAA
1 ATAAAAAC-AGGGTTAGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAA
*
428489 ATCGATGTTTTGGAA
65 ATCGATGTTTTAGAA
* * * * * * *
428504 AT-AAACCTGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCTCTGATTGTGAAAA
1 ATAAAAACAGGGTTAGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCC-CTGATGGTGGAAA
*
428568 ATC-AGTGTTTTGGAA
65 ATCGA-TGTTTTAGAA
*
428583 AT-AAAACAGAGTTAGAGTATCCCCTT-GAAAATAAC-GAGGTTGGAGTATTCCC-GAT--TGAG
1 ATAAAAACAGGGTTAGAGTATCCCCTTAG-AAATAACAG-GGTTGGAGTA-TCCCTGATGGTG-G
428642 AAAGATCGATAG-TTTAGAA
62 AAA-ATCGAT-GTTTTAGAA
** ** *
428661 ATAAACCCAAAGTTAGAGTAT-CCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATGGTGGAAA
1 ATAAAAACAGGGTTAGAGTATCCCCTT-AGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAA
*
428725 ATCGATATTTTAGAA
65 ATCGATGTTTTAGAA
*
428740 ATGAAAACA
1 ATAAAAACA
428749 TGAATGAAAT
Statistics
Matches: 392, Mismatches: 65, Indels: 50
0.77 0.13 0.10
Matches are distributed among these distances:
76 2 0.01
77 3 0.01
78 73 0.19
79 295 0.75
80 17 0.04
81 2 0.01
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.27
Consensus pattern (79 bp):
ATAAAAACAGGGTTAGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAA
TCGATGTTTTAGAA
Found at i:428380 original size:158 final size:157
Alignment explanation
Indices: 428198--428747 Score: 560
Period size: 158 Copynumber: 3.5 Consensus size: 157
428188 ATAAAAACGG
* * * *
428198 GGTTGGAGTATCCCCTTAGAAATAACAGGATTGAAGTATCCCTAATGGTGGAAAATCAATGTTTT
1 GGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCTGATGGTGAAAAATCAATGTTTT
* *
428263 GGAAATAAAACCGAGGTTAGAGTATTCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGA
66 AGAAATAAAACCGAGGTTAGAGTATTCCCTCAGAAATAACGAGGTTGGAGTATCCCCGATTGTGA
*
428328 AAAATCGATGTTTTAGAAATAAAGTCGA
131 AAAATCGATGTTTTAGAAATAAA-CCGA
* * ** **
428356 GGTTGGAGTATCCCCTTAGGAATAACGGGGTTGGAGTAT-CCTCGATTATGAAAAATTGATGTTT
1 GGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCT-GATGGTGAAAAATCAATGTTT
* * * * * * * * *
428420 TAAAAAT-AAAGCTAGGGTTAGAGTA-TCTTCTCAGAAATAGCGGGGTTGGGGTATCCCTGATGG
65 TAGAAATAAAACCGA-GGTTAGAGTATTC-CCTCAGAAATAACGAGGTTGGAGTATCCCCGATTG
*
428483 TTG-AAAATCGATGTTTTGGAAATAAACCTG-
128 -TGAAAAATCGATGTTTTAGAAATAAACC-GA
* * * *
428513 GGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCTCTGATTGTGAAAAATCAGTGTTT
1 GGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCC-CTGATGGTGAAAAATCAATGTTT
* * * * * *
428578 TGGAAATAAAACAGA-GTTAGAGTATCCCCT-TGAAAATAACGAGGTTGGAGTATTCCCGATTGA
65 TAGAAATAAAACCGAGGTTAGAGTATTCCCTCAG-AAATAACGAGGTTGGAGTATCCCCGATTGT
* *
428641 GAAAGATCGATAG-TTTAGAAATAAACCCAA
129 GAAAAATCGAT-GTTTTAGAAATAAA-CCGA
* * * * * *
428671 AGTTAGAGTAT-CCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATGGTGGAAAATCGATATTT
1 GGTTGGAGTATCCCCTT-AGAAATAACAGGGTTGGAGTATCCCTGATGGTGAAAAATCAATGTTT
428735 TAGAAATGAAAAC
65 TAGAAAT-AAAAC
428748 ATGAATGAAA
Statistics
Matches: 316, Mismatches: 60, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
156 2 0.01
157 126 0.40
158 180 0.57
159 8 0.03
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (157 bp):
GGTTGGAGTATCCCCTTAGAAATAACAGGGTTGGAGTATCCCTGATGGTGAAAAATCAATGTTTT
AGAAATAAAACCGAGGTTAGAGTATTCCCTCAGAAATAACGAGGTTGGAGTATCCCCGATTGTGA
AAAATCGATGTTTTAGAAATAAACCGA
Found at i:428680 original size:236 final size:237
Alignment explanation
Indices: 428203--428747 Score: 637
Period size: 236 Copynumber: 2.3 Consensus size: 237
428193 AACGGGGTTG
* * * *
428203 GAGTATCCCCTT-AGAAATAACAGGATTGAAGTATCCCTAATGGTGGAAAATCAATGTTTTGGAA
1 GAGTAT-CCCTTCAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAATCGATGTTTTGGAA
* *
428267 ATAAAACCGAGGTTAGAGTATTCCCTCAGAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAA
65 ATAAAACCGAGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAA
* * * *
428332 TCGATGTTTTAGAAATAAAGTCGAGGTTGGAGTATCCCCTTAGGAATAACGGGGTTGGAGTATCC
130 TCGATGTTTTAGAAATAAAGACGAGGTTAGAGTATCCCCTTAGAAATAACGAGGTTGGAGTATCC
* * * **
428397 TCGATTATGAAAAATTGATGTTTTAAAAATAAAGCTAGGGTTA
195 TCGATTATGAAAAATCGATGTTTTAAAAATAAACCCAAAGTTA
* * * * *
428440 GAGTAT-CTTCTCAGAAATAGCGGGGTTGGGGTATCCCTGATGGTTGAAAATCGATGTTTTGGAA
1 GAGTATCCCT-TCAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAATCGATGTTTTGGAA
* **
428504 AT-AAACCTG-GGTTGGAGTATCCCCTCAAAAATAAC-AGGGTTGGAGTATCCTCTGATTGTGAA
65 ATAAAACC-GAGGTTAGAGTATCCCCTCAAAAATAACGA-GGTTGGAGTATCC-CCAATTGTGAA
*
428566 AAATC-AGTGTTTTGGAAATAAA-AC-AGAGTTAGAGTATCCCCTT-GAAAATAACGAGGTTGGA
127 AAATCGA-TGTTTTAGAAATAAAGACGAG-GTTAGAGTATCCCCTTAG-AAATAACGAGGTTGGA
* *
428627 GTATTCC-CGATTGA-GAAAGATCGATAG-TTTAGAAATAAACCCAAAGTTA
189 GTA-TCCTCGATT-ATGAAAAATCGAT-GTTTTAAAAATAAACCCAAAGTTA
* * *
428676 GAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCCGATGGTGGAAAATCGATATTTTAGAAA
1 GAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAATCGATGTTTTGGAAA
428741 TGAAAAC
66 T-AAAAC
428748 ATGAATGAAA
Statistics
Matches: 260, Mismatches: 34, Indels: 27
0.81 0.11 0.08
Matches are distributed among these distances:
235 6 0.02
236 162 0.62
237 88 0.34
238 4 0.02
ACGTcount: A:0.35, C:0.14, G:0.24, T:0.28
Consensus pattern (237 bp):
GAGTATCCCTTCAGAAATAACAGGGTTGGAGTATCCCTGATGGTGGAAAATCGATGTTTTGGAAA
TAAAACCGAGGTTAGAGTATCCCCTCAAAAATAACGAGGTTGGAGTATCCCCAATTGTGAAAAAT
CGATGTTTTAGAAATAAAGACGAGGTTAGAGTATCCCCTTAGAAATAACGAGGTTGGAGTATCCT
CGATTATGAAAAATCGATGTTTTAAAAATAAACCCAAAGTTA
Found at i:431152 original size:21 final size:22
Alignment explanation
Indices: 431113--431156 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
431103 CATTTCTCAT
431113 TGTATCGATACATTCTGGGTAA
1 TGTATCGATACATTCTGGGTAA
431135 TGTATCGATACA-TCTGGGTAA
1 TGTATCGATACATTCTGGGTAA
431156 T
1 T
431157 ACCCAGAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.27, C:0.14, G:0.23, T:0.36
Consensus pattern (22 bp):
TGTATCGATACATTCTGGGTAA
Found at i:431788 original size:36 final size:32
Alignment explanation
Indices: 431699--431793 Score: 106
Period size: 36 Copynumber: 2.9 Consensus size: 32
431689 CCTTACAATG
431699 CTATC-TTTC-AAGGCTAAGATAGAAACC-TTC
1 CTATCTTTTCAAAGGCTAAGATAG-AACCTTTC
**
431729 CTATCTTTTCACGGGCTAAGATAGAACCTTTCTCC
1 CTATCTTTTCAAAGGCTAAGATAGAACC-TT-T-C
431764 CTATCTTTTCCAAAGGCTAAGATAGAACCT
1 CTATCTTTT-CAAAGGCTAAGATAGAACCT
431794 CACAATCACT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
30 5 0.09
31 8 0.15
32 11 0.20
33 1 0.02
34 1 0.02
35 11 0.20
36 17 0.31
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (32 bp):
CTATCTTTTCAAAGGCTAAGATAGAACCTTTC
Found at i:434860 original size:24 final size:24
Alignment explanation
Indices: 434815--434865 Score: 77
Period size: 24 Copynumber: 2.1 Consensus size: 24
434805 ACACTGTATC
*
434815 GATACATGAACAGTGGTGAATAGT
1 GATACATGAACAGTGGTAAATAGT
434839 GATACATGAACAGT-GTAAAATAGT
1 GATACATGAACAGTGGT-AAATAGT
434863 GAT
1 GAT
434866 GAACAGTAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 2 0.08
24 23 0.92
ACGTcount: A:0.41, C:0.08, G:0.25, T:0.25
Consensus pattern (24 bp):
GATACATGAACAGTGGTAAATAGT
Found at i:434993 original size:33 final size:32
Alignment explanation
Indices: 434937--435000 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
434927 ATTCATGATG
434937 TATCGATATAATGAACATGTATCGATACATTA
1 TATCGATATAATGAACATGTATCGATACATTA
*
434969 TATCGATACTAA-GCAATATGTATCGATACATT
1 TATCGATA-TAATG-AACATGTATCGATACATT
435001 TCGATGTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 9 0.31
33 20 0.69
ACGTcount: A:0.39, C:0.14, G:0.12, T:0.34
Consensus pattern (32 bp):
TATCGATATAATGAACATGTATCGATACATTA
Found at i:437245 original size:27 final size:27
Alignment explanation
Indices: 437207--437259 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
437197 GTTAAAAAAC
* *
437207 GGGGTTGGAGTATCCTCGATGAATAAT
1 GGGGTTGGAGTATCCCCGATAAATAAT
437234 GGGGTTGGAGTATCCCCGATAAATAA
1 GGGGTTGGAGTATCCCCGATAAATAA
437260 ATTTTGATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.28, C:0.13, G:0.32, T:0.26
Consensus pattern (27 bp):
GGGGTTGGAGTATCCCCGATAAATAAT
Found at i:439460 original size:13 final size:13
Alignment explanation
Indices: 439442--439467 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
439432 CAGGGCAGCT
439442 TTGTATCGATACA
1 TTGTATCGATACA
439455 TTGTATCGATACA
1 TTGTATCGATACA
439468 ACACTTATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:443652 original size:26 final size:22
Alignment explanation
Indices: 443600--443643 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
443590 AAGAAATTTC
*
443600 CAATAATCATTAATAAATGAGA
1 CAATAATCATTAACAAATGAGA
443622 CAATAATCATTAACAAATGAGA
1 CAATAATCATTAACAAATGAGA
443644 GAGCAAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.11, G:0.09, T:0.25
Consensus pattern (22 bp):
CAATAATCATTAACAAATGAGA
Found at i:446060 original size:21 final size:21
Alignment explanation
Indices: 446019--446062 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
446009 CTCCCCTTTA
* *
446019 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
446040 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
446061 TC
1 TC
446063 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:447887 original size:13 final size:13
Alignment explanation
Indices: 447869--447907 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
447859 ATAATCACCC
447869 TGTATCGATACAA
1 TGTATCGATACAA
*
447882 TGTATCGATATAA
1 TGTATCGATACAA
447895 TGTATCGATACAA
1 TGTATCGATACAA
447908 GGAAAAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.38, C:0.13, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:450005 original size:15 final size:15
Alignment explanation
Indices: 449985--450015 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
449975 ATTTCGTTTG
*
449985 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
450000 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
450015 G
1 G
450016 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:451848 original size:21 final size:21
Alignment explanation
Indices: 451819--451863 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
451809 AAGTTTTCAT
*
451819 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
451839 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
451861 TTT
1 TTT
451864 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:454517 original size:33 final size:32
Alignment explanation
Indices: 454475--454538 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
454465 CACACCTAGA
*
454475 TGTATCGATACATATTGCTTAGTATTGATACAT
1 TGTATCGATACATATT-CTTAGTATCGATACAT
* *
454508 TGTATCGATACATGTTCTTTGTATCGATACA
1 TGTATCGATACATATTCTTAGTATCGATACA
454539 CCATAAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 13 0.46
33 15 0.54
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (32 bp):
TGTATCGATACATATTCTTAGTATCGATACAT
Found at i:459983 original size:13 final size:13
Alignment explanation
Indices: 459965--459990 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
459955 TACAGCAAGT
459965 ATGTATCGATACA
1 ATGTATCGATACA
459978 ATGTATCGATACA
1 ATGTATCGATACA
459991 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:462249 original size:21 final size:21
Alignment explanation
Indices: 462216--462260 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
462206 TTGCAAGTTG
*
462216 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
462238 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
462258 AAA
1 AAA
462261 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:464085 original size:15 final size:15
Alignment explanation
Indices: 464065--464095 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
464055 TAAAAATGTC
*
464065 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
464080 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
464095 C
1 C
464096 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:466192 original size:13 final size:13
Alignment explanation
Indices: 466155--466203 Score: 66
Period size: 13 Copynumber: 3.9 Consensus size: 13
466145 GGAAATTCAA
466155 TGTATCGATACAT
1 TGTATCGATACAT
* *
466168 T-TTTC-TTACAT
1 TGTATCGATACAT
466179 TGTATCGATACAT
1 TGTATCGATACAT
466192 TGTATCGATACA
1 TGTATCGATACA
466204 GGGTGATTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
11 6 0.20
12 6 0.20
13 18 0.60
ACGTcount: A:0.29, C:0.16, G:0.12, T:0.43
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:470892 original size:10 final size:9
Alignment explanation
Indices: 470871--470910 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
470861 AACCTTTAAA
470871 CCCCCCTACC
1 CCCCCCT-CC
*
470881 CCGCCCTCC
1 CCCCCCTCC
*
470890 CCCCCCCCC
1 CCCCCCTCC
470899 CCCCCCTCC
1 CCCCCCTCC
470908 CCC
1 CCC
470911 AGTACCTCTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 20 0.77
10 6 0.23
ACGTcount: A:0.03, C:0.88, G:0.03, T:0.07
Consensus pattern (9 bp):
CCCCCCTCC
Found at i:472579 original size:18 final size:18
Alignment explanation
Indices: 472556--472591 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
472546 GCCACTGCTT
472556 TTTTAAACCCTGCTCTTA
1 TTTTAAACCCTGCTCTTA
472574 TTTTAAACCCTGCTCTTA
1 TTTTAAACCCTGCTCTTA
472592 AGTCATCATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.44
Consensus pattern (18 bp):
TTTTAAACCCTGCTCTTA
Found at i:475035 original size:18 final size:18
Alignment explanation
Indices: 475005--475039 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
474995 TACAATTAAA
475005 TTTAAAATATTTTATATT
1 TTTAAAATATTTTATATT
475023 TTTATAAAT-TTTTATAT
1 TTTA-AAATATTTTATAT
475040 GATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTAAAATATTTTATATT
Found at i:475068 original size:17 final size:18
Alignment explanation
Indices: 475009--475068 Score: 58
Period size: 18 Copynumber: 3.6 Consensus size: 18
474999 ATTAAATTTA
*
475009 AAATATTTTATATTTTTAT
1 AAATATTTTATA-TTGTAT
475028 AAAT-TTTTATA-TG-AT
1 AAATATTTTATATTGTAT
*
475043 -AATAATTTATATTGTAT
1 AAATATTTTATATTGTAT
475060 AAAT-TTTTA
1 AAATATTTTA
475069 AACATTTATA
Statistics
Matches: 34, Mismatches: 3, Indels: 10
0.72 0.06 0.21
Matches are distributed among these distances:
14 3 0.09
15 8 0.24
16 3 0.09
17 6 0.18
18 10 0.29
19 4 0.12
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
AAATATTTTATATTGTAT
Found at i:478605 original size:154 final size:155
Alignment explanation
Indices: 478337--478759 Score: 476
Period size: 155 Copynumber: 2.7 Consensus size: 155
478327 CCCTAACTTA
* * * * * * **
478337 TACCTTCGGCACAGAAGC-ACACTTAGTAACAACCTAGGAGTTGGTTCTAAAAAATTATGAAAAT
1 TACCTTCGGCATAAAAGCGA-ACCTAGTGACAACCTAAGACTTGGTTCTAAAAAATTACAAAAAT
* * * *
478401 GCCCTTAAAGGATACCTTTGATGTAAAAGTACCTGATACCCCTAAAGGACTTCAA-AAGGATTTT
65 GCCCTT-AGGGATACCTTTGACGTAAAAGTACCTGATACTCCTAAAGGACTTAAAGAAGGATTTT
* * * *
478465 AAATGGGATGAGCCTACCCTAAATGCC
129 AAAAGGGATGAACCTACCATAAATACC
* *
478492 TACCTTCGGCATAAAAGCGAACCTAGTGACAA-CTAAGACTTGGTTTTAGAAAATTACAAAAATG
1 TACCTTCGGCATAAAAGCGAACCTAGTGACAACCTAAGACTTGGTTCTAAAAAATTACAAAAATG
* * *
478556 CCCTTAGGGAATACCTTTGACGTAAAAGTATCTGATACTCCTAAGGGACTTAAAGAAGGGTTTTA
66 CCCTTAGGG-ATACCTTTGACGTAAAAGTACCTGATACTCCTAAAGGACTTAAAGAAGGATTTTA
*
478621 AAAGGGATGAACCTACCATAAATATC
130 AAAGGGATGAACCTACCATAAATACC
* * * * * ** * *
478647 TACCTTCCGCATAAAAGTGGACCTGGTGACAACCTAAGACTCGAATCTAAAAAATTACCAAAATA
1 TACCTTCGGCATAAAAGCGAACCTAGTGACAACCTAAGACTTGGTTCTAAAAAATTACAAAAATG
* * *
478712 CCCTTAGGGGATACCTTCGAC-TAAAAGTACCTAATACTCTTAAAGGAC
66 CCCTTA-GGGATACCTTTGACGTAAAAGTACCTGATACTCCTAAAGGAC
478760 ACTAAAATGA
Statistics
Matches: 225, Mismatches: 38, Indels: 10
0.82 0.14 0.04
Matches are distributed among these distances:
153 3 0.01
154 70 0.31
155 107 0.48
156 42 0.19
157 3 0.01
ACGTcount: A:0.37, C:0.20, G:0.17, T:0.25
Consensus pattern (155 bp):
TACCTTCGGCATAAAAGCGAACCTAGTGACAACCTAAGACTTGGTTCTAAAAAATTACAAAAATG
CCCTTAGGGATACCTTTGACGTAAAAGTACCTGATACTCCTAAAGGACTTAAAGAAGGATTTTAA
AAGGGATGAACCTACCATAAATACC
Found at i:479314 original size:5 final size:5
Alignment explanation
Indices: 479304--479334 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
479294 ATGAAAAAGA
479304 ATTTT ATTTT ATTTT ATTTT ATTATT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATT-TT ATTTT
479335 TTAAAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (5 bp):
ATTTT
Found at i:480983 original size:166 final size:167
Alignment explanation
Indices: 480702--481059 Score: 404
Period size: 166 Copynumber: 2.1 Consensus size: 167
480692 TAGTATATAC
* * * * * * ***
480702 AAAAAAATTCAAAATTTATGAAATTAATTGAATTTCTCAACATTGATTTTATGGGAGTTTAATAA
1 AAAAAAATTCAAAACTTATGAAAATAAGTGAATTTCTCAAAACTGATTTGATAAAAGTTTAATAA
* *
480767 TAATATTAGATGAATTTTAAATAATTTAAACCGAGAAAAATCTACCTAAAAATATTTATGGAGTA
66 CAATATTAGATGAATTCTAAATAATTTAAACCGAGAAAAATCTACCTAAAAA-ATTTATGGAGTA
* * **
480832 GAAAACTAGAT-TTTT-GGAAAATATGGAGATTTTGAAG
130 GAAAACTAGATATTTTGGGAAAAAAGGGAG-TTTCAAAG
*
480869 -AAAAAATTCAAAACTCATGAAAATAAGTGAAATTT-TCAAAACTGATTTGATAAAAGTTTAATA
1 AAAAAAATTCAAAACTTATGAAAATAAGTG-AATTTCTCAAAACTGATTTGATAAAAGTTTAATA
* * * * *
480932 ACAATATTAGATGAATTCTAAA-AATTTTACATCGAAGAAAATTC-CCCTAAAAAATTTTTGGAG
65 ACAATATTAGATGAATTCTAAATAA-TTTAAACCG-AGAAAAATCTACCTAAAAAATTTATGGAG
* * *
480995 TAGAAAATTCGATATTTTGGGAAAAAAGGGCGTTTCAAAG
128 TAGAAAACTAGATATTTTGGGAAAAAAGGGAGTTTCAAAG
*
481035 AAAAAAATCCAAAACTTATGAAAAT
1 AAAAAAATTCAAAACTTATGAAAAT
481060 GAATTAATTT
Statistics
Matches: 159, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
165 22 0.14
166 92 0.58
167 45 0.28
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.32
Consensus pattern (167 bp):
AAAAAAATTCAAAACTTATGAAAATAAGTGAATTTCTCAAAACTGATTTGATAAAAGTTTAATAA
CAATATTAGATGAATTCTAAATAATTTAAACCGAGAAAAATCTACCTAAAAAATTTATGGAGTAG
AAAACTAGATATTTTGGGAAAAAAGGGAGTTTCAAAG
Done.