Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold46
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2524624
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.31
Warning! 119418 characters in sequence are not A, C, G, or T
File 5 of 15
Found at i:671437 original size:28 final size:28
Alignment explanation
Indices: 671406--671470 Score: 96
Period size: 28 Copynumber: 2.3 Consensus size: 28
671396 TTGCACTCTC
*
671406 TTTTTTTTTG-TTTTTGTTTTTTTGTTGT
1 TTTTTTTTTGTTTTTTGTTTTGTT-TTGT
*
671434 TTTTTTGTTGTTTTTTGTTTTGTTTTGT
1 TTTTTTTTTGTTTTTTGTTTTGTTTTGT
671462 TTTTTTTTT
1 TTTTTTTTT
671471 CATCATTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
28 21 0.64
29 12 0.36
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (28 bp):
TTTTTTTTTGTTTTTTGTTTTGTTTTGT
Found at i:671469 original size:10 final size:10
Alignment explanation
Indices: 671406--671469 Score: 71
Period size: 10 Copynumber: 6.6 Consensus size: 10
671396 TTGCACTCTC
671406 TTTTTT-TTT
1 TTTTTTGTTT
*
671415 GTTTTTG--T
1 TTTTTTGTTT
671423 TTTTTTGTTGT
1 TTTTTTGTT-T
*
671434 TTTTTTGTTG
1 TTTTTTGTTT
671444 TTTTTTGTTT
1 TTTTTTGTTT
*
671454 TGTTTTGTTT
1 TTTTTTGTTT
671464 TTTTTT
1 TTTTTT
671470 TCATCATTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
8 7 0.16
9 5 0.11
10 23 0.51
11 10 0.22
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (10 bp):
TTTTTTGTTT
Found at i:678432 original size:13 final size:13
Alignment explanation
Indices: 678414--678438 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
678404 ACAGAGATCA
678414 AATGTATCGATAC
1 AATGTATCGATAC
678427 AATGTATCGATA
1 AATGTATCGATA
678439 TATTGAGTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.12, G:0.16, T:0.32
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:679583 original size:18 final size:17
Alignment explanation
Indices: 679558--679591 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
679548 CTTTTGGTCG
679558 TTTTTTTTCTTTTTGTT
1 TTTTTTTTCTTTTTGTT
*
679575 TTTTATTTTTTTTTTGT
1 TTTT-TTTTCTTTTTGT
679592 CGCCTCTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.03, C:0.03, G:0.06, T:0.88
Consensus pattern (17 bp):
TTTTTTTTCTTTTTGTT
Found at i:685369 original size:13 final size:13
Alignment explanation
Indices: 685351--685376 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
685341 AATTTTTTTG
685351 TGTATCGATACAT
1 TGTATCGATACAT
685364 TGTATCGATACAT
1 TGTATCGATACAT
685377 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:687966 original size:13 final size:13
Alignment explanation
Indices: 687950--687985 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
687940 AATCCCCCTA
687950 TATCGATACAGTG
1 TATCGATACAGTG
*
687963 TATCGATACATTG
1 TATCGATACAGTG
687976 TATCGATACA
1 TATCGATACA
687986 AAGAAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Consensus pattern (13 bp):
TATCGATACAGTG
Found at i:690089 original size:15 final size:15
Alignment explanation
Indices: 690069--690099 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
690059 ATTTCGTTTG
*
690069 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
690084 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
690099 G
1 G
690100 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:694294 original size:20 final size:21
Alignment explanation
Indices: 694247--694301 Score: 76
Period size: 20 Copynumber: 2.7 Consensus size: 21
694237 ATTCCCAATG
* *
694247 ACATGTATCGATACATCTTTT
1 ACATGTATCGATACATCTGTA
*
694268 TCATGTATCGATACAT-TGTA
1 ACATGTATCGATACATCTGTA
694288 ACATGTATCGATAC
1 ACATGTATCGATAC
694302 TTTGAATTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (21 bp):
ACATGTATCGATACATCTGTA
Found at i:697905 original size:21 final size:21
Alignment explanation
Indices: 697872--697921 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
697862 TTGTAAGTTG
*
697872 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
697894 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
697915 AAATAAA
1 AAATAAA
697922 AACTTGCACA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:699740 original size:15 final size:15
Alignment explanation
Indices: 699720--699750 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
699710 TAAAAATGTC
*
699720 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
699735 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
699750 C
1 C
699751 TAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:701849 original size:13 final size:13
Alignment explanation
Indices: 701831--701855 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
701821 CATTTTTCTT
701831 TGTATCGATACAC
1 TGTATCGATACAC
701844 TGTATCGATACA
1 TGTATCGATACA
701856 GGGAGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAC
Found at i:703517 original size:23 final size:21
Alignment explanation
Indices: 703475--703517 Score: 50
Period size: 23 Copynumber: 2.0 Consensus size: 21
703465 GTTTAATGTT
**
703475 TTTGCTTGACTTTGTGTTTTA
1 TTTGCTTGACTTTGAATTTTA
703496 TTTGCATTGTACTTTGAATTTT
1 TTTGC-TTG-ACTTTGAATTTT
703518 TAATCTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.60
Consensus pattern (21 bp):
TTTGCTTGACTTTGAATTTTA
Found at i:704454 original size:13 final size:13
Alignment explanation
Indices: 704436--704461 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
704426 TACACAAAGT
704436 ATGTATCGATACA
1 ATGTATCGATACA
704449 ATGTATCGATACA
1 ATGTATCGATACA
704462 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:704459 original size:32 final size:33
Alignment explanation
Indices: 704418--704481 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
704408 TAGCCAAACT
**
704418 TGTATCGATACACAAAGTA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
704450 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
704482 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:714172 original size:3 final size:3
Alignment explanation
Indices: 714164--714219 Score: 112
Period size: 3 Copynumber: 18.7 Consensus size: 3
714154 TTTAGTTTTA
714164 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
714212 ATT ATT AT
1 ATT ATT AT
714220 AGTATAATCT
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 53 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:717521 original size:62 final size:62
Alignment explanation
Indices: 717446--717638 Score: 307
Period size: 62 Copynumber: 3.1 Consensus size: 62
717436 TTTCTTCTAT
* *** *
717446 CACTTTTC-AGTCCTCAAAGAGCAGGATGCCTTTTCCTTTTAAAGTCCACACAAGTTGGTGG
1 CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
* *
717507 CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTAAAGCCCATACAAGTTGTTGG
1 CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
*
717569 CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTGAAGCCCACACAAGTTGGTGG
1 CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
717631 CACTTTTC
1 CACTTTTC
717639 AATCGCCGTT
Statistics
Matches: 121, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
61 8 0.07
62 113 0.93
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (62 bp):
CACTTTTCTAGTCCTCAAAGAGCAAGACAACTTTTCCTTTTAAAGCCCACACAAGTTGGTGG
Found at i:717859 original size:62 final size:61
Alignment explanation
Indices: 717642--718135 Score: 661
Period size: 62 Copynumber: 8.0 Consensus size: 61
717632 ACTTTTCAAT
* * * * *
717642 CGCCGTTTCCTTTTCAAGCCCACATAAGTTGGTGGCATTTTTCTAGTCTTCAAAGAGCAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGA
*
717704 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGA
* * * * *
717765 TGCTTTTTCCTTTTAAAGCCCACACAAATTGGTGACACTTTTCAGTCCTCAAGGAGCAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
*
717826 CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGA
1 CGCCTTTTCC-TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
* *
717888 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTAAAAGAGCAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGA
* * * * *
717950 TGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTAGTCTTCAAAGAGTAAGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-TTTTCAGTCCTCAAAGAGCAGGA
* ** *
718012 CGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTTTCCCTCAAAGAGTAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT-CCTCAAAGAGCAGGA
* * *
718074 CACCTTTTCCTTTTAAAGCCAACACAAGTTGGTGGCAC-CTTCTAGTCC-CTAAAGAGCAGGA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTC-AAAGAGCAGGA
718135 C
1 C
718136 CCATTTTATT
Statistics
Matches: 383, Mismatches: 42, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
60 1 0.00
61 133 0.35
62 245 0.64
63 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (61 bp):
CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA
Found at i:717874 original size:123 final size:123
Alignment explanation
Indices: 717642--718135 Score: 674
Period size: 123 Copynumber: 4.0 Consensus size: 123
717632 ACTTTTCAAT
* * * * * *
717642 CGCCGTTTCCTTTTCAAGCCCACATAAGTTGGTGGCATTTTTCTAGTCTTCAAAGAGCAGGACGC
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGACACTTTTCTAGTCCTCAAAGAGCAGGACGC
717707 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGA
66 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGA
* * * *
717765 TGCTTTTTCCTTTTAAAGCCCACACAAATTGGTGACACTTTTC-AGTCCTCAAGGAGCAGGACGC
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGACACTTTTCTAGTCCTCAAAGAGCAGGACGC
* *
717829 CTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTCAGTCCTCAAAGAGTAGGA
66 CTTTTCC-TTTTAAAGCCCACACAAGTTGGTGGCACCTTCT-AGTCCTCAAAGAGCAGGA
* *
717888 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGA-ACTTTTCTAGTCCTAAAAGAGCAGGATG
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGT-GACACTTTTCTAGTCCTCAAAGAGCAGGACG
* * * * *
717952 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTAGTCTTCAAAGAGTAAGA
65 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAAGAGCAGGA
* * * * *
718012 CGCCTTTTCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCT-TTCCCTCAAAGAGTAGGACA
1 CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGACACTTTTCTAGT-CCTCAAAGAGCAGGACG
*
718076 CCTTTTCCTTTTAAAGCCAACACAAGTTGGTGGCACCTTCTAGTCC-CTAAAGAGCAGGA
65 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTC-AAAGAGCAGGA
718135 C
1 C
718136 CCATTTTATT
Statistics
Matches: 328, Mismatches: 34, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
122 31 0.09
123 162 0.49
124 131 0.40
125 4 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.31
Consensus pattern (123 bp):
CGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGACACTTTTCTAGTCCTCAAAGAGCAGGACGC
CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGA
Found at i:717964 original size:185 final size:184
Alignment explanation
Indices: 717642--718134 Score: 731
Period size: 185 Copynumber: 2.7 Consensus size: 184
717632 ACTTTTCAAT
* * * * * *
717642 CGCCGTTTCC-TTTTCAAGCCCACATAAGTTGGTGGCATTTTTCTAGTCTTCAAAGAGCAGGACG
1 CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGTAGGACG
*
717706 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAAGAGCAGGATGCTTT
65 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCT-AAAGAGCAGGATGCCTT
* *
717771 TTCCTTTTAAAGCCCACACAAATTGGTGACAC-TTTTCAGTCCTCAAGGAGCAGGA
129 TTCCTTTTAAAGCCCACACAAATTGGTGACACTTTTTCAGTCCTCAAAGAGCAAGA
717826 CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGC
1 CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGC
* *
717891 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGAACTTTTCTAGTCCTAAAAGAGCAGGATGCCTT
66 CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCT-AAAGAGCAGGATGCCTT
* * * * *
717956 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTTAGTCTTCAAAGAGTAAGA
129 TTCCTTTTAAAGCCCACACAAATTGGTGACACTTTTTCAGTCCTCAAAGAGCAAGA
** *
718012 CGCCTTTT-CTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTTTCCCTCAAAGAGTAGGACA
1 CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGT-CCTCAAAGAGTAGGACG
*
718076 CCTTTTCCTTTTAAAGCCAACACAAGTTGGTGGCACCTTCTAGTCCCTAAAGAGCAGGA
65 CCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGT-CCTAAAGAGCAGGA
718135 CCCATTTTAT
Statistics
Matches: 281, Mismatches: 23, Indels: 9
0.90 0.07 0.03
Matches are distributed among these distances:
184 62 0.22
185 140 0.50
186 79 0.28
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (184 bp):
CGCCTTTTCCTTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGTAGGACGC
CTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTAAAGAGCAGGATGCCTTTT
CCTTTTAAAGCCCACACAAATTGGTGACACTTTTTCAGTCCTCAAAGAGCAAGA
Found at i:721203 original size:28 final size:30
Alignment explanation
Indices: 721133--721204 Score: 94
Period size: 31 Copynumber: 2.4 Consensus size: 30
721123 TTTCACCTCT
*
721133 GGGATACTCCAACCTCGTTATTTCACAATCG
1 GGGATACTCCAACCCCGTTATTTCACAA-CG
* *
721164 GGGATACTCCAACCCCGTTATTT-TCGA-G
1 GGGATACTCCAACCCCGTTATTTCACAACG
721192 GGGATACTCCAAC
1 GGGATACTCCAAC
721205 ATCGGTTTTA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
28 14 0.37
30 2 0.05
31 22 0.58
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.26
Consensus pattern (30 bp):
GGGATACTCCAACCCCGTTATTTCACAACG
Found at i:721275 original size:28 final size:28
Alignment explanation
Indices: 721239--721314 Score: 125
Period size: 28 Copynumber: 2.7 Consensus size: 28
721229 ATTTTTCACA
* *
721239 ATCGGGGATACTTCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
721267 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
721295 ATCAGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCC
721315 AGTTTTATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.28
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:721293 original size:107 final size:106
Alignment explanation
Indices: 721119--721393 Score: 346
Period size: 107 Copynumber: 2.6 Consensus size: 106
721109 TAAATTTCTA
* * *
721119 AATTTTTCAC-CTCTGGGATACTCCAACCTCGTTATTTCACAATCGGGGATACTCCAACCCCGTT
1 AATTTTTCACAATCGGGGATACTTCAACCTCGTTATTT--C-ATCGGGGATACTCCAACCCCGTT
* *
721183 ATTT-TCGAGGGGATACTCCAACATCGGTTTTATTTCTAAAACACC
63 ATTTATC-A-GGGATACTCCAACACCAGTTTTATTTCTAAAACACC
721228 AATTTTTCACAATCGGGGATACTTCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTATT
1 AATTTTTCACAATCGGGGATACTTCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTATT
*
721293 TCATCAGGGATACTCCAACCCCAGTTTTATTTCTAAAACACC
66 T-ATCAGGGATACTCCAACACCAGTTTTATTTCTAAAACACC
* * *
721335 GATTTTTCACAATCGAGGATAC-TCAAACC-CTGTTATTTTCA-AGGGGATACT-CAACCCCG
1 AATTTTTCACAATCGGGGATACTTC-AACCTC-GTTA-TTTCATCGGGGATACTCCAACCCCG
721394 ATTTTATTTC
Statistics
Matches: 151, Mismatches: 9, Indels: 15
0.86 0.05 0.09
Matches are distributed among these distances:
106 11 0.07
107 97 0.64
108 7 0.05
109 12 0.08
110 24 0.16
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (106 bp):
AATTTTTCACAATCGGGGATACTTCAACCTCGTTATTTCATCGGGGATACTCCAACCCCGTTATT
TATCAGGGATACTCCAACACCAGTTTTATTTCTAAAACACC
Found at i:721355 original size:79 final size:78
Alignment explanation
Indices: 721267--721447 Score: 224
Period size: 79 Copynumber: 2.3 Consensus size: 78
721257 TCGTTATTTC
*
721267 ATCGGGGATACTCCAACCCCGTTA-TTTCATCA-GGGATACTCCAACCCC-AGTTTTATTTCTAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCA--AGGGGATACT-CAACCCCGA-TTTTATTTCCAA
*
721329 AACACCGATTTTTCACA
62 AACACCAATTTTTCACA
* * *
721346 ATCGAGGATACTCAAACCCTGTTATTTTCAAGGGGATACTCAACCCCGATTTTATTTCCAAAACA
1 ATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCAACCCCGATTTTATTTCCAAAACA
*
721411 CCAATTTTTCATA
66 CCAATTTTTCACA
* *
721424 GTCAGGGGATACTCCAGCCCCGTT
1 ATC-GGGGATACTCCAACCCCGTT
721448 GTCATCTCCA
Statistics
Matches: 87, Mismatches: 11, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
78 36 0.41
79 46 0.53
80 5 0.06
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (78 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCAACCCCGATTTTATTTCCAAAACA
CCAATTTTTCACA
Found at i:721418 original size:78 final size:78
Alignment explanation
Indices: 721267--721421 Score: 208
Period size: 78 Copynumber: 2.0 Consensus size: 78
721257 TCGTTATTTC
* * *
721267 ATCGGGGATACTCCAACCCCGTTATTTCATCAGGGATACTCCAACCCCAGTTTTATTTCTAAAAC
1 ATCGAGGATACTCAAACCCCGTTATTTCA-CAGGGATACTCCAACCCCAGTTTTATTTCCAAAAC
*
721332 ACCGATTTTTCACA
65 ACCAATTTTTCACA
*
721346 ATCGAGGATACTCAAACCCTGTTATTTTCA-AGGGGATACT-CAACCCC-GATTTTATTTCCAAA
1 ATCGAGGATACTCAAACCCCGTTA-TTTCACA-GGGATACTCCAACCCCAG-TTTTATTTCCAAA
721408 ACACCAATTTTTCA
63 ACACCAATTTTTCA
721422 TAGTCAGGGG
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
77 1 0.01
78 33 0.49
79 29 0.43
80 5 0.07
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (78 bp):
ATCGAGGATACTCAAACCCCGTTATTTCACAGGGATACTCCAACCCCAGTTTTATTTCCAAAACA
CCAATTTTTCACA
Found at i:724876 original size:12 final size:12
Alignment explanation
Indices: 724861--724892 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
724851 AAAAAATAAA
724861 AAAACAAAAAAC
1 AAAACAAAAAAC
724873 AAAACAAAAAAC
1 AAAACAAAAAAC
*
724885 AGAACAAA
1 AAAACAAA
724893 GAAAAAAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.81, C:0.16, G:0.03, T:0.00
Consensus pattern (12 bp):
AAAACAAAAAAC
Found at i:726011 original size:61 final size:61
Alignment explanation
Indices: 725910--726559 Score: 822
Period size: 61 Copynumber: 10.6 Consensus size: 61
725900 ACGCCTTTTC
*
725910 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
*
725972 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * *
726033 CAAGTTGGTAGCA-TTTTTCAGTCCTTAAAGAGTAGGATGCCTTTT-CTTTTAAAGCCCACA
1 CAAGTTGGTGGCACTTTTT-AGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * * *
726093 CAAGTTGGTGGCACATTTTAGTCCTCAAGGAGCAGGACGTCGTTTCCTTTTCAAGCCCACA
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * ** * *
726154 CAAGTTGGTGGCACCTTCTAGTCCTCAAAAAGCAGGATACTTTTTTCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * *
726215 CAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCTAGA
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * * * * * *
726276 TAAGTTGGTGACACTTTTCTAGTTCTTAAAGAACAGGAAGCATTTTCTTTTTAAA-CCCACA
1 CAAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * *
726337 CAAGTTTGTGGCACTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACA
1 CAAGTTGGTGGCAC-TTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * *
726399 CAAGTTAGTGGCACTTTTCAGTCCTCAAGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * *
726460 CAAGTTGGTGGCACTTTTCT-TTCCCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCCAACA
1 CAAGTTGGTGGCACTTTT-TAGT-CCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * * *
726522 CAAGTTAGTGGCACCTTCTAGTCCCCAAGGAGCAGGAC
1 CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGAC
726560 CCATTTTATT
Statistics
Matches: 506, Mismatches: 73, Indels: 19
0.85 0.12 0.03
Matches are distributed among these distances:
60 52 0.10
61 333 0.66
62 121 0.24
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (61 bp):
CAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
Found at i:726523 original size:123 final size:122
Alignment explanation
Indices: 725910--726559 Score: 817
Period size: 123 Copynumber: 5.3 Consensus size: 122
725900 ACGCCTTTTC
*
725910 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAAGACGCCTTTTCCTTTTAAAGCCCACACAA
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
*
725975 GTTGGTGGCACTTTTTAGTCCTCAAAGAGTAGGACGCCTTTTCCTTTTAAAGCCCACA
66 GTTGGTGGCACTTTTT-GTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * * *
726033 CAAGTTGGTAGCATTTTTC-AGTCCTTAAAGAGTAGGATGCCTTTT-CTTTTAAAGCCCACACAA
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
* * * * *
726096 GTTGGTGGCACATTTTAGTCCTCAAGGAGCAGGACGTCGTTTCCTTTTCAAGCCCACA
66 GTTGGTGGCAC-TTTTTGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * ** * *
726154 CAAGTTGGTGGCAC-CTTCTAGTCCTCAAAAAGCAGGATACTTTTTTCTTTTAAAGCCCACACAA
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
* * *
726218 GTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCTAGA
66 GTTGGTGGCACTTTT-TGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * * * * * *
726276 TAAGTTGGTGACACTTTTCTAGTTCTTAAAGAACAGGAAGCATTTTCTTTTTAAA-CCCACACAA
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
* * *
726340 GTTTGTGGCACTTTTTTAGTCCTCAAAGAGCAGGATGCCTTTTCTTTTTAAAGCCCACA
66 GTTGGTGGCAC-TTTTT-GTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* *
726399 CAAGTTAGTGGCACTTTTC-AGTCCTCAAGGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
* * * *
726463 GTTGGTGGCACTTTTCTTTCCCTCAAAGAGTAGGACGCTTTTTCCTTTTAAAGCCAACA
66 GTTGGTGGCACTTTT-TGT-CCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
* * * *
726522 CAAGTTAGTGGCAC-CTTCTAGTCCCCAAGGAGCAGGAC
1 CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGAC
726560 CCATTTTATT
Statistics
Matches: 453, Mismatches: 63, Indels: 22
0.84 0.12 0.04
Matches are distributed among these distances:
120 3 0.01
121 102 0.23
122 158 0.35
123 190 0.42
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (122 bp):
CAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACACAA
GTTGGTGGCACTTTTTGTCCTCAAAGAGCAGGACGCCTTTTCCTTTTAAAGCCCACA
Found at i:729607 original size:28 final size:30
Alignment explanation
Indices: 729537--729608 Score: 103
Period size: 31 Copynumber: 2.4 Consensus size: 30
729527 TTCATCTCGA
729537 GGATACTCCAACCCCATTATTTCACAATCAG
1 GGATACTCCAACCCCATTATTTCACAA-CAG
* *
729568 GGATACTCCAACCCCATTATTTC-CGA-GG
1 GGATACTCCAACCCCATTATTTCACAACAG
729596 GGATACTCCAACC
1 GGATACTCCAACC
729609 TCAGTTTTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
28 14 0.36
30 2 0.05
31 23 0.59
ACGTcount: A:0.29, C:0.33, G:0.14, T:0.24
Consensus pattern (30 bp):
GGATACTCCAACCCCATTATTTCACAACAG
Found at i:729678 original size:28 final size:29
Alignment explanation
Indices: 729642--729716 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 29
729632 ATTTTTCATA
*
729642 ATCGAGGATACTCCAACCCCGTTA-TTTC
1 ATCGGGGATACTCCAACCCCGTTATTTTC
*
729670 ATCGGGGATACTCCAACCCTGTTATTTTC
1 ATCGGGGATACTCCAACCCCGTTATTTTC
* *
729699 A-AGGGGATACTCAAACCC
1 ATCGGGGATACTCCAACCC
729717 TAGTTTTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
28 37 0.88
29 5 0.12
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (29 bp):
ATCGGGGATACTCCAACCCCGTTATTTTC
Found at i:729705 original size:107 final size:107
Alignment explanation
Indices: 729522--729797 Score: 378
Period size: 107 Copynumber: 2.6 Consensus size: 107
729512 TAAATTTCTA
* *
729522 AATTTTTCAT-CTCGAGGATACTCCAACCCCATTATTTCACAATCAGGGATACTCCAACCCCATT
1 AATTTTTCATAATCGAGGATACTCCAACCCCATTATTT--C-ATCGGGGATACTCCAACCCCATT
* * *
729586 ATTTCCGAGGGGATACTCCAA-CCTCAGTTTTATTTCTAAAACACT
63 ATTTCCAAGGGGATACTCAAACCCT-AGTTTTATTTCCAAAACACT
* **
729631 AATTTTTCATAATCGAGGATACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCTGTTATT
1 AATTTTTCATAATCGAGGATACTCCAACCCCATTATTTCATCGGGGATACTCCAACCCCATTATT
*
729696 TTCAAGGGGATACTCAAACCCTAGTTTTATTTCCAAAACACT
66 TCCAAGGGGATACTCAAACCCTAGTTTTATTTCCAAAACACT
* * *
729738 AATTTTTCACAATCGAGGATACTCCAACCCAATTATTTTCA-AGGGGATACTCCAACCCCA
1 AATTTTTCATAATCGAGGATACTCCAACCCCATTA-TTTCATCGGGGATACTCCAACCCCA
729798 ATTTTATTTC
Statistics
Matches: 149, Mismatches: 15, Indels: 8
0.87 0.09 0.05
Matches are distributed among these distances:
107 105 0.70
108 9 0.06
109 10 0.07
110 25 0.17
ACGTcount: A:0.30, C:0.27, G:0.12, T:0.31
Consensus pattern (107 bp):
AATTTTTCATAATCGAGGATACTCCAACCCCATTATTTCATCGGGGATACTCCAACCCCATTATT
TCCAAGGGGATACTCAAACCCTAGTTTTATTTCCAAAACACT
Found at i:729758 original size:79 final size:79
Alignment explanation
Indices: 729670--729822 Score: 234
Period size: 79 Copynumber: 1.9 Consensus size: 79
729660 CCGTTATTTC
* ** * *
729670 ATCGGGGATACTCCAACCCTGTTATTTTCAAGGGGATACTCAAACCCTAGTTTTATTTCCAAAAC
1 ATCGAGGATACTCCAACCCAATTATTTTCAAGGGGATACTCAAACCCCAATTTTATTTCCAAAAC
*
729735 ACTAATTTTTCACA
66 ACCAATTTTTCACA
* *
729749 ATCGAGGATACTCCAACCCAATTATTTTCAAGGGGATACTCCAACCCCAATTTTATTTCCAGAAC
1 ATCGAGGATACTCCAACCCAATTATTTTCAAGGGGATACTCAAACCCCAATTTTATTTCCAAAAC
729814 ACCAATTTT
66 ACCAATTTT
729823 CCATAGTCGG
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
79 66 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (79 bp):
ATCGAGGATACTCCAACCCAATTATTTTCAAGGGGATACTCAAACCCCAATTTTATTTCCAAAAC
ACCAATTTTTCACA
Found at i:731740 original size:154 final size:154
Alignment explanation
Indices: 731511--731806 Score: 384
Period size: 154 Copynumber: 1.9 Consensus size: 154
731501 CAGTAACCCT
* * *
731511 AAAGAACTTAAAAATCATCATAAATAAGATAAACCTATCCTAAATGCATACCTTTGGCATAAAAA
1 AAAGAACTTAAAAATCATCATAAATAAGATAAACCTATCCTAAACGCACACCTTTAGCATAAAAA
* * *
731576 CATCCCGGTGACAACCTAGGACTCGATTT-TAGAAAATTATGAAAATGCCCCTAAGGTATACCTT
66 CATCCCGGTGACAACCTAAGACTC-ATTTCTAAAAAATTA-CAAAATGCCCC-AAGGTATACCTT
* *
731640 CGACAT-TAAGTATCTCGATAACTTTA
128 CAACATGAAAGTATCTCGATAACTTTA
* * * * *
731666 AAAG-ACTTAAAAATGATCATAAA-AGGGATGAACCTATCCTAAACGTACATCTTTAGCATAAAA
1 AAAGAACTTAAAAATCATCATAAATA-AGATAAACCTATCCTAAACGCACACCTTTAGCATAAAA
* **
731729 GCATCTTGGTGACAACCTAAGACTCATTTCTAAAAAATTACAAAATGCCCCAAGGTATACCTTCA
65 ACATCCCGGTGACAACCTAAGACTCATTTCTAAAAAATTACAAAATGCCCCAAGGTATACCTTCA
731794 ACATGAAAGTATC
130 ACATGAAAGTATC
731807 CCGGTAACCT
Statistics
Matches: 122, Mismatches: 16, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
152 17 0.14
153 22 0.18
154 79 0.65
155 4 0.03
ACGTcount: A:0.42, C:0.20, G:0.12, T:0.26
Consensus pattern (154 bp):
AAAGAACTTAAAAATCATCATAAATAAGATAAACCTATCCTAAACGCACACCTTTAGCATAAAAA
CATCCCGGTGACAACCTAAGACTCATTTCTAAAAAATTACAAAATGCCCCAAGGTATACCTTCAA
CATGAAAGTATCTCGATAACTTTA
Found at i:732467 original size:33 final size:33
Alignment explanation
Indices: 732423--732489 Score: 107
Period size: 33 Copynumber: 2.0 Consensus size: 33
732413 CACATGAAAA
* *
732423 TGTATCGATACATATTGCAATGTATCGATACAT
1 TGTATCAATACACATTGCAATGTATCGATACAT
*
732456 TGTATCAATACACCTTGCAATGTATCGATACAT
1 TGTATCAATACACATTGCAATGTATCGATACAT
732489 T
1 T
732490 ATGTGAAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (33 bp):
TGTATCAATACACATTGCAATGTATCGATACAT
Found at i:732562 original size:22 final size:21
Alignment explanation
Indices: 732534--732590 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 21
732524 CTACCCTTCA
732534 AATGTATCGATACACA-TATAGG
1 AATGTATCGATACA-ATTATA-G
* *
732556 AATGTATCAATACAATTTTAG
1 AATGTATCGATACAATTATAG
732577 AATGTATCGATACA
1 AATGTATCGATACA
732591 TACATAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 15 0.48
22 16 0.52
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (21 bp):
AATGTATCGATACAATTATAG
Found at i:733776 original size:13 final size:13
Alignment explanation
Indices: 733758--733782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
733748 GTATTGCTTG
733758 GTATCGATACATT
1 GTATCGATACATT
733771 GTATCGATACAT
1 GTATCGATACAT
733783 GTTTTTTGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
GTATCGATACATT
Found at i:737332 original size:13 final size:13
Alignment explanation
Indices: 737314--737338 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
737304 TACATTGAAC
737314 AATGTATCGATAT
1 AATGTATCGATAT
737327 AATGTATCGATA
1 AATGTATCGATA
737339 CATTCATTAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:737495 original size:21 final size:21
Alignment explanation
Indices: 737471--737524 Score: 99
Period size: 21 Copynumber: 2.6 Consensus size: 21
737461 TGAAACCCTA
*
737471 TATCGATACATTATAGAAATT
1 TATCGATACATTATAGAAATC
737492 TATCGATACATTATAGAAATC
1 TATCGATACATTATAGAAATC
737513 TATCGATACATT
1 TATCGATACATT
737525 TGAACAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (21 bp):
TATCGATACATTATAGAAATC
Found at i:737854 original size:35 final size:34
Alignment explanation
Indices: 737808--737905 Score: 153
Period size: 34 Copynumber: 2.9 Consensus size: 34
737798 AGTGATTGAG
*
737808 AGGTTCTATCTTAGCCTTTGAAAAAGATAGGGAGA
1 AGGTTCTATCTTAGCCTATG-AAAAGATAGGGAGA
737843 AGGTTCTATCTTAGCC-AGTGAAAAGATAGGGAGA
1 AGGTTCTATCTTAGCCTA-TGAAAAGATAGGGAGA
*
737877 AGGTTCTATCTTGGCCTATGAAAAGATAG
1 AGGTTCTATCTTAGCCTATGAAAAGATAG
737906 AGTTGTAAGG
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
34 40 0.68
35 19 0.32
ACGTcount: A:0.34, C:0.12, G:0.27, T:0.28
Consensus pattern (34 bp):
AGGTTCTATCTTAGCCTATGAAAAGATAGGGAGA
Found at i:742374 original size:20 final size:21
Alignment explanation
Indices: 742346--742384 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
742336 AGTTACTTTG
742346 TTAGAAGTAGT-CGTATATTT
1 TTAGAAGTAGTACGTATATTT
*
742366 TTAGGAGTAGTACGTATAT
1 TTAGAAGTAGTACGTATAT
742385 CGTTTTTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.31, C:0.05, G:0.23, T:0.41
Consensus pattern (21 bp):
TTAGAAGTAGTACGTATATTT
Found at i:743920 original size:79 final size:78
Alignment explanation
Indices: 743829--744475 Score: 542
Period size: 79 Copynumber: 8.2 Consensus size: 78
743819 AAATTTAATA
* * * * * *
743829 TTTTGGAGATAAAAACAAGGTCGA-AATACCACCTCTGAAATAACGGGGTTGGAGTATCCCCAAT
1 TTTTGGAAATAAAACCAAGGTTGAGTAT-CC-CCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
* *
743893 GGTGGAAAATCAATG
64 TGTGGAAAATCGATG
* * * ** ** *
743908 TTTTGGAAATAAAACCAGGGTTGGGGTATCCCCTCGGAAATAATAGGGTCAGAGTATTCCCGATT
1 TTTTGGAAATAAAACCAAGGTT-GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT
*
743973 GTGGGAAATCGATG
65 GTGGAAAATCGATG
* *
743987 TTTTGGAAATAAAACCGAGGTTTGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATT
1 TTTTGGAAATAAAACCAAGG-TTGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT
* * *
744052 GTGAAAAATTGGTG
65 GTGGAAAATCGATG
* ** * * *
744066 TTTCGGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAATGGGATTGGAGTATCCCCGATT
1 TTTTGGAAATAAAACCAAGGTT-GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT
*** *
744131 GCAAAAAATTGATG
65 GTGGAAAATCGATG
* *** * * *
744145 TTTTGAAAATAAAATTGAGGTCGGAGTATCCCCTC-GAAAATAACGGAGTTGGAGTATCCTCGAT
1 TTTTGGAAATAAAACCAAGGT-TGAGTATCCCCTCAG-AAATAACGGGGTTGGAGTATCCCCGAT
*** *
744209 TGCAAAAAATTGATG
64 TGTGGAAAATCGATG
** * ** **
744224 TTTTGGAAATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCTAATT
1 TTTTGGAAATAAAACCAAGGTT-GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT
* * *
744289 GTGAAAAATTGGTG
65 GTGGAAAATCGATG
* * ** * * * *
744303 TTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTTAAAAATAACGGGATTGGAGTATCCCCAATT
1 TTTTGGAAATAAAACCAAGGTT-GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATT
* *
744368 GTGAAAAATTGATG
65 GTGGAAAATCGATG
* ** * * *
744382 TTTTGGAAAGAAAATTGAGGGTTAGAGTATCCCCTCAGAAATGACGGGGTTAGAGTATCCCCGAT
1 TTTTGGAAATAAAA-CCAAGGTT-GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGAT
*
744447 TGTGAAAAATCGATG
64 TGTGGAAAATCGATG
*
744462 TTTTGGGAATAAAA
1 TTTTGGAAATAAAA
744476 TCGGGGTTGG
Statistics
Matches: 474, Mismatches: 85, Indels: 17
0.82 0.15 0.03
Matches are distributed among these distances:
78 2 0.00
79 398 0.84
80 72 0.15
81 2 0.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (78 bp):
TTTTGGAAATAAAACCAAGGTTGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATTG
TGGAAAATCGATG
Found at i:744121 original size:158 final size:158
Alignment explanation
Indices: 743866--744490 Score: 784
Period size: 158 Copynumber: 3.9 Consensus size: 158
743856 ACCACCTCTG
* * ** *
743866 AAATAACGGGGTTGGAGTATCCCCAATGGTGGAAAATCAATGTTTTGGAAATAAAACCAGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
* ** * * **
743931 GGGTATCCCCTCGGAAATAATAGGGTCAGAGTATTCCCGATTGTGGGAAATCGATGTTTTGGAAA
66 GAGTATCCCCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAA
* *
743996 TAAAACCGAGGTTTGAGTATCCCCTCAA
131 TAAAATCGAGGTTGGAGTATCCCCTCAA
* * *
744024 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTCGGAAATAAAACCGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
* ** * *
744089 GAGTATCCCCTCAAAAATAAT-GGGATTGGAGTATCCCCGATTGCAAAAAATTGATGTTTTGAAA
66 GAGTATCCCCTCAAAAATAATAGGG-TTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAA
* * *
744153 ATAAAATTGAGGTCGGAGTATCCCCTCGA
130 ATAAAATCGAGGTTGGAGTATCCCCTCAA
* * * **
744182 AAATAACGGAGTTGGAGTATCCTCGATTGCAAAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
* ** * * *
744247 GAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCTAATTGTGAAAAATTGGTGTTTTAGAAA
66 GAGTATCCCCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAA
* *
744312 TAAAATCGGGGTTGGAGTATCCCCTTAA
131 TAAAATCGAGGTTGGAGTATCCCCTCAA
* * **
744340 AAATAACGGGATTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAAGAAAATTGAGGGTT
1 AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAACCG-GGGTT
* * * ** *
744405 AGAGTATCCCCTCAGAAATGACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGGA
65 GGAGTATCCCCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAA
*
744470 ATAAAATCGGGGTTGGAGTAT
130 ATAAAATCGAGGTTGGAGTAT
744491 TTTCTCGAAA
Statistics
Matches: 400, Mismatches: 64, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
157 3 0.01
158 315 0.79
159 82 0.20
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (158 bp):
AAATAACGGGGTTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAATAAAACCGGGGTTG
GAGTATCCCCTCAAAAATAATAGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGAAA
TAAAATCGAGGTTGGAGTATCCCCTCAA
Found at i:744292 original size:237 final size:238
Alignment explanation
Indices: 743866--744490 Score: 763
Period size: 237 Copynumber: 2.6 Consensus size: 238
743856 ACCACCTCTG
* * *** ** * * ** *
743866 AAATAACGGGGTTGGAGTATCCCCAATGGTGGAAAATCAATGTTTTGGAAATAAAA-CCAGGGTT
1 AAATAACGGGATTGGAGTATCCCCAATTGCAAAAAATTGATGTTTTGAAAAGAAAATTGAGGGTC
* * * * * * ****
743930 GGGGTATCCCCTCGGAAATAATAGG-GTCAGAGTATTCCCGATTGTGGGAAATCGATGTTTTGGA
66 AGAGTATCCCCTCAGAAATAA-CGGAGTTAGAGTATCCCCGATTGCAAAAAATCGATGTTTTGGA
* * * *
743994 AATAAAACCGAGGTTTGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCCCGATTGTGAAAA
130 AATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATTGTGAAAA
*
744059 ATTGGTGTTTCGGAAATAAAACCGGGGTTGGAGTATCCCCTCAA
195 ATTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTCAA
* * *
744103 AAATAATGGGATTGGAGTATCCCCGATTGCAAAAAATTGATGTTTTGAAAATAAAATTGA-GGTC
1 AAATAACGGGATTGGAGTATCCCCAATTGCAAAAAATTGATGTTTTGAAAAGAAAATTGAGGGTC
* * * *
744167 GGAGTATCCCCTC-GAAAATAACGGAGTTGGAGTATCCTCGATTGCAAAAAATTGATGTTTTGGA
66 AGAGTATCCCCTCAG-AAATAACGGAGTTAGAGTATCCCCGATTGCAAAAAATCGATGTTTTGGA
* *
744231 AATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAATAGGGTTGGAGTATCCCTAATTGTGAAAA
130 AATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATTGTGAAAA
* * *
744296 ATTGGTGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTTAA
195 ATTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTCAA
** * *
744340 AAATAACGGGATTGGAGTATCCCCAATTGTGAAAAATTGATGTTTTGGAAAGAAAATTGAGGGTT
1 AAATAACGGGATTGGAGTATCCCCAATTGCAAAAAATTGATGTTTTGAAAAGAAAATTGAGGGTC
* * ** *
744405 AGAGTATCCCCTCAGAAATGACGGGGTTAGAGTATCCCCGATTGTGAAAAATCGATGTTTTGGGA
66 AGAGTATCCCCTCAGAAATAACGGAGTTAGAGTATCCCCGATTGCAAAAAATCGATGTTTTGGAA
*
744470 ATAAAATCGGGGTTGGAGTAT
131 ATAAAACCGGGGTTGGAGTAT
744491 TTTCTCGAAA
Statistics
Matches: 332, Mismatches: 51, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
236 3 0.01
237 250 0.75
238 78 0.23
239 1 0.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (238 bp):
AAATAACGGGATTGGAGTATCCCCAATTGCAAAAAATTGATGTTTTGAAAAGAAAATTGAGGGTC
AGAGTATCCCCTCAGAAATAACGGAGTTAGAGTATCCCCGATTGCAAAAAATCGATGTTTTGGAA
ATAAAACCGGGGTTGGAGTATCCCCTCAAAAATAACAGGGTTGGAGTATCCCCAATTGTGAAAAA
TTGGTGTTTCAGAAATAAAACCGGGGTTGGAGTATCCCCTCAA
Found at i:746945 original size:30 final size:30
Alignment explanation
Indices: 746909--747002 Score: 91
Period size: 30 Copynumber: 3.5 Consensus size: 30
746899 TACAATGAAA
746909 AATGTATCGATACATCTTGGTAAAATCCAG
1 AATGTATCGATACATCTTGGTAAAATCCAG
**
746939 AATGTATCGAT--ATAAT-G---AAT----
1 AATGTATCGATACATCTTGGTAAAATCCAG
*
746959 AATGTATCGATACATCTGGGTAAAATCCAG
1 AATGTATCGATACATCTTGGTAAAATCCAG
746989 AATGTATCGATACA
1 AATGTATCGATACA
747003 ATGAACAATA
Statistics
Matches: 49, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
20 11 0.22
22 2 0.04
23 1 0.02
24 3 0.06
26 3 0.06
27 1 0.02
28 3 0.06
30 25 0.51
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (30 bp):
AATGTATCGATACATCTTGGTAAAATCCAG
Found at i:746946 original size:50 final size:50
Alignment explanation
Indices: 746836--747007 Score: 247
Period size: 50 Copynumber: 3.4 Consensus size: 50
746826 AAAATGCCTA
* * *
746836 AATGTATCGATACATTGAGAAATGTATTGATACATCATCTGGGTAAAA-CCTAG
1 AATGTATCGATACAATGAAAAATGTATCGATACATC-T-T-GGTAAAATCC-AG
746889 AATGTATCGATACAATGAAAAATGTATCGATACATCTTGGTAAAATCCAG
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTTGGTAAAATCCAG
* * *
746939 AATGTATCGATATAATGAATAATGTATCGATACATCTGGGTAAAATCCAG
1 AATGTATCGATACAATGAAAAATGTATCGATACATCTTGGTAAAATCCAG
746989 AATGTATCGATACAATGAA
1 AATGTATCGATACAATGAA
747008 CAATATCGAT
Statistics
Matches: 111, Mismatches: 7, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
50 74 0.67
51 3 0.03
52 1 0.01
53 33 0.30
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (50 bp):
AATGTATCGATACAATGAAAAATGTATCGATACATCTTGGTAAAATCCAG
Found at i:748592 original size:79 final size:79
Alignment explanation
Indices: 748501--748791 Score: 336
Period size: 79 Copynumber: 3.7 Consensus size: 79
748491 AATTTTAATA
* *
748501 TTTTGGAAATAAAATTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATGCC-CGAT
1 TTTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTAT-CCTCGAT
*
748565 GGTAGAAAATTGGTG
65 GGTGGAAAATTGGTG
* * * *
748580 TTTTGAAAATAAAACCGGGGTTGGAGTATCCCCTTAAAAATAACGGGGTTGGAGTATCCTCGATT
1 TTTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATG
* *
748645 ATGGAAAATCGGTG
66 GTGGAAAATTGGTG
* * * * * * * *
748659 TTTTGGATATAAAACAGGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCCTTGATG
1 TTTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATG
*
748724 GTGGAAAATTGATG
66 GTGGAAAATTGGTG
* * * * *
748738 TTTTAAAAATAAAACT-AGGATGAGAGTATCCCTTCGAAAATAA-AGGGTTGGAGT
1 TTTTGAAAATAAAACTGAGGTTG-GAGTATCCCCTCAAAAATAACGGGGTTGGAGT
748792 TACCATAATG
Statistics
Matches: 179, Mismatches: 31, Indels: 5
0.83 0.14 0.02
Matches are distributed among these distances:
78 14 0.08
79 165 0.92
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.28
Consensus pattern (79 bp):
TTTTGAAAATAAAACTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATCCTCGATG
GTGGAAAATTGGTG
Found at i:748820 original size:78 final size:79
Alignment explanation
Indices: 748507--748829 Score: 212
Period size: 79 Copynumber: 4.1 Consensus size: 79
748497 AATATTTTGG
* * * * * **
748507 AAATAAAATTGAGGTTG-GAGTATCCCCTCAAAAATAACGGGGTTGGAGTATGCC-CGATGGT-A
1 AAATAAAACT-AGGATGAGAGTATCCCCTCGAAAATAACAGGGTTGGAATAT-CCATAATGGTGA
* * *
748569 GAAAATTGGTGTTTTGA
64 -AAAATCGATGTTTTAA
** * ** * * * ** *
748586 AAATAAAACCGGGGTTG-GAGTATCCCCTTAAAAATAACGGGGTTGGAGTATCC-TCGATTATGG
1 AAATAAAA-CTAGGATGAGAGTATCCCCTCGAAAATAACAGGGTTGGAATATCCAT-AATGGTGA
* **
748649 AAAATCGGTGTTTTGG
64 AAAATCGATGTTTTAA
* * * * * * *
748665 ATATAAAAC-AGGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATATCCTTGATGGTGGA
1 AAATAAAACTA-GGATGAGAGTATCCCCTCGAAAATAACAGGGTTGGAATATCCATAATGGTGAA
*
748729 AAATTGATGTTTTAA
65 AAATCGATGTTTTAA
* *
748744 AAATAAAACTAGGATGAGAGTATCCCTTCGAAAATAA-AGGGTTGGAGT-TACCATAATGGTGAA
1 AAATAAAACTAGGATGAGAGTATCCCCTCGAAAATAACAGGGTTGGAATAT-CCATAATGGTGAA
*
748807 AAATCGATGTTTTAG
65 AAATCGATGTTTTAA
748822 AAATAAAA
1 AAATAAAA
748830 ACATCAGTGA
Statistics
Matches: 202, Mismatches: 34, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
77 1 0.00
78 46 0.23
79 153 0.76
80 2 0.01
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.28
Consensus pattern (79 bp):
AAATAAAACTAGGATGAGAGTATCCCCTCGAAAATAACAGGGTTGGAATATCCATAATGGTGAAA
AATCGATGTTTTAA
Found at i:748832 original size:158 final size:158
Alignment explanation
Indices: 748501--748829 Score: 366
Period size: 158 Copynumber: 2.1 Consensus size: 158
748491 AATTTTAATA
* ** * * *
748501 TTTTGGAAATAAAATTGAGGTTGGAGTATCCCCTCAAAAATAACGGGGTTGGAGTATGCCCGATG
1 TTTTAGAAATAAAACAGGGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAATATGCCCGATG
* * * * *
748566 GTAGAAAATTGGTGTTTTGAAAATAAAACCGGGGTTGGAGTATCCCCTTAAAAATAACGGGGTTG
66 GTAGAAAATTGATGTTTTAAAAATAAAACCGAGGATGGAGTATCCCCTTAAAAATAACAGGGTTG
* * *
748631 GAGTATCCTCGATTATGGAAAATCGGTG
131 GAGTATACTCGATAATGGAAAATCGATG
* * * *
748659 TTTTGGATATAAAACAGGGGTTAGAGTATCCCCTCGAAAATAACGGGGTTGGAATAT-CCTTGAT
1 TTTTAGAAATAAAACAGGGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAATATGCC-CGAT
* * *
748723 GGTGGAAAATTGATGTTTTAAAAATAAAA-CTAGGATGAGAGTAT-CCCTTCGAAAATAA-AGGG
65 GGTAGAAAATTGATGTTTTAAAAATAAAACCGAGGATG-GAGTATCCCCTT-AAAAATAACAGGG
748785 TTGGAGT-TAC-C-ATAATGGTGAAAAATCGATG
128 TTGGAGTATACTCGATAAT-G-G-AAAATCGATG
748816 TTTTAGAAATAAAA
1 TTTTAGAAATAAAA
748830 ACATCAGTGA
Statistics
Matches: 144, Mismatches: 21, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
154 4 0.03
155 2 0.01
156 3 0.02
157 43 0.30
158 92 0.64
ACGTcount: A:0.35, C:0.11, G:0.26, T:0.28
Consensus pattern (158 bp):
TTTTAGAAATAAAACAGGGGTTAGAGTATCCCCTCAAAAATAACGGGGTTGGAATATGCCCGATG
GTAGAAAATTGATGTTTTAAAAATAAAACCGAGGATGGAGTATCCCCTTAAAAATAACAGGGTTG
GAGTATACTCGATAATGGAAAATCGATG
Found at i:750447 original size:21 final size:22
Alignment explanation
Indices: 750401--750457 Score: 82
Period size: 21 Copynumber: 2.6 Consensus size: 22
750391 CTACCCTTCA
750401 AATGTATCGATACACATATAAG
1 AATGTATCGATACACATATAAG
*
750423 AATGTATCGATACA-AT-TCCAG
1 AATGTATCGATACACATAT-AAG
750444 AATGTATCGATACA
1 AATGTATCGATACA
750458 TACAGAATTG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 1 0.03
21 18 0.55
22 14 0.42
ACGTcount: A:0.42, C:0.16, G:0.14, T:0.28
Consensus pattern (22 bp):
AATGTATCGATACACATATAAG
Found at i:750477 original size:20 final size:19
Alignment explanation
Indices: 750401--750470 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 19
750391 CTACCCTTCA
*
750401 AATGTATCGATACACATATAAG
1 AATGTATCGAT--ACATA-CAG
*
750423 AATGTATCGATACAATTCCAG
1 AATGTATCGATAC-A-TACAG
750444 AATGTATCGATACATACAG
1 AATGTATCGATACATACAG
750463 AATTGTAT
1 AA-TGTAT
750471 GCATACAATT
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
19 6 0.14
20 8 0.19
21 16 0.38
22 12 0.29
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.30
Consensus pattern (19 bp):
AATGTATCGATACATACAG
Found at i:750477 original size:41 final size:42
Alignment explanation
Indices: 750401--750480 Score: 103
Period size: 41 Copynumber: 1.9 Consensus size: 42
750391 CTACCCTTCA
750401 AATGTATCGATACACATATAAGAATGTATCGATACAATTCCAG
1 AATGTATCGATA-ACATATAAGAATGTATCGATACAATTCCAG
*
750444 AATGTATCGAT-ACATA-CAGAATTGTAT-GCATACAATT
1 AATGTATCGATAACATATAAGAA-TGTATCG-ATACAATT
750481 AGCCCAATGG
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
40 5 0.15
41 18 0.53
43 11 0.32
ACGTcount: A:0.41, C:0.15, G:0.14, T:0.30
Consensus pattern (42 bp):
AATGTATCGATAACATATAAGAATGTATCGATACAATTCCAG
Found at i:753532 original size:154 final size:153
Alignment explanation
Indices: 753357--753675 Score: 389
Period size: 154 Copynumber: 2.1 Consensus size: 153
753347 GTTATATGAA
* * *
753357 AAAAATGC-AAAACTCATAAAATAAATT-AAATTTTCACAAACTGATTTAATATGAATTTAACAA
1 AAAAAT-CTAAAACTCACAAAATAAATTAAAATTTTCA-AAACTAATTTAATATGAATTAAACAA
*
753420 AAATATTTGATA-AATTTTAAAAATTTTAAACTAAGAAAAATC-TAACCA-ACGAAATTTACAAA
64 AAATATTTGA-AGAATTTTAAAAATTATAAACTAAGAAAAATCAT-ACCAGA-GAAATTTACAAA
* ** *
753482 GTAAAAAACT-TCATATCTTGGTAACAGG
126 ATAAAAAACTCT-ATATCTTGAAAACAAG
* *
753510 AAAAATCCTAAAACTCACAAAATAAATTAAAATTTTCAAAACTAATTTAGTATGAATTAAACAAT
1 AAAAAT-CTAAAACTCACAAAATAAATTAAAATTTTCAAAACTAATTTAATATGAATTAAACAAA
* * * * *
753575 AATATTTGAAGAATTTTCAATATTATAAACTTAGAAAAATCATACTAGAGAAATTTACAAAATAG
65 AATATTTGAAGAATTTTAAAAATTATAAACTAAGAAAAATCATACCAGAGAAATTTACAAAATAA
*
753640 AAAACTCTATATTTTGAAAACAAG
130 AAAACTCTATATCTTGAAAACAAG
753664 AAAAATCTAAAA
1 AAAAATCTAAAA
753676 AAAATGTAAA
Statistics
Matches: 143, Mismatches: 17, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
153 14 0.10
154 117 0.82
155 12 0.08
ACGTcount: A:0.53, C:0.11, G:0.07, T:0.30
Consensus pattern (153 bp):
AAAAATCTAAAACTCACAAAATAAATTAAAATTTTCAAAACTAATTTAATATGAATTAAACAAAA
ATATTTGAAGAATTTTAAAAATTATAAACTAAGAAAAATCATACCAGAGAAATTTACAAAATAAA
AAACTCTATATCTTGAAAACAAG
Found at i:757803 original size:58 final size:58
Alignment explanation
Indices: 757740--757930 Score: 199
Period size: 57 Copynumber: 3.3 Consensus size: 58
757730 GTGTGGTCAT
* * * * *
757740 TTTAGTCATTTGCCATGATATAAGGATTTTTATGCAAATTTATGCATTTTAAGGCAAT
1 TTTAGTTATTTTCCATGATATAAGAACTTTTATGCAAATTTATGCATTTTAAGGCAAC
* * ** * **
757798 TTTAGTTATTTTCCATGATTTATGAACCATTATGCAATTTTACACATTTTAA-G-ATAC
1 TTTAGTTATTTTCCATGATATAAGAACTTTTATGCAAATTTATGCATTTTAAGGCA-AC
* * * * *
757855 TTTAGTTATTTTCCATAAAATAAAAACTTTTATG-AAATTCATGCATTTTAAGGCCAC
1 TTTAGTTATTTTCCATGATATAAGAACTTTTATGCAAATTTATGCATTTTAAGGCAAC
757912 TTTAGTTATTTTCCATGAT
1 TTTAGTTATTTTCCATGAT
757931 GTAGGGATCA
Statistics
Matches: 104, Mismatches: 26, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
56 14 0.13
57 49 0.47
58 41 0.39
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.45
Consensus pattern (58 bp):
TTTAGTTATTTTCCATGATATAAGAACTTTTATGCAAATTTATGCATTTTAAGGCAAC
Found at i:758322 original size:78 final size:77
Alignment explanation
Indices: 758139--758330 Score: 204
Period size: 78 Copynumber: 2.5 Consensus size: 77
758129 ATTGGAATCC
* * * * *
758139 TGTGAAAACTTTCATGTCGAAACATGTTTGTTAAAGGTATTTAGGTAATATTATCTTAAAATAGA
1 TGTGAGAACCTTCATGTCGAAACATGTCTGTT-AAGGTATTTAGATAATATTACCTTAAAATAGA
*
758204 GTCCTTAGGATCA
65 GTCCTTAGGATAA
* * * * * * * * *
758217 TTTGAGAACCTTCGTCTTGAAACATGTCCGTTAGGGATATTTAGATAATATTACCTTGAAGTGGA
1 TGTGAGAACCTTCATGTCGAAACATGTCTGTTAAGG-TATTTAGATAATATTACCTTAAAATAGA
*
758282 GTCCTTTGGATAA
65 GTCCTTAGGATAA
* *
758295 TGTGGGAACCTTCATGTCGAAATATGTCTGTTAAGG
1 TGTGAGAACCTTCATGTCGAAACATGTCTGTTAAGG
758331 GTACTTAAAT
Statistics
Matches: 89, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
77 3 0.03
78 86 0.97
ACGTcount: A:0.30, C:0.12, G:0.21, T:0.36
Consensus pattern (77 bp):
TGTGAGAACCTTCATGTCGAAACATGTCTGTTAAGGTATTTAGATAATATTACCTTAAAATAGAG
TCCTTAGGATAA
Found at i:759438 original size:3 final size:3
Alignment explanation
Indices: 759430--759456 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
759420 AAAAAGGAAA
759430 AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT
759457 TAATTAAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:759618 original size:32 final size:32
Alignment explanation
Indices: 759575--759647 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 32
759565 ACAAACCGTA
* *
759575 AATGTAACGATACAAAAGTGTTGTATTGATAC
1 AATGTATCGATACAAAAGTGTTGTATCGATAC
* * *
759607 AATGTATCGATACATAGGTTTTGTATCGATAC
1 AATGTATCGATACAAAAGTGTTGTATCGATAC
759639 AATGTATCG
1 AATGTATCG
759648 CTACGAAGCT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (32 bp):
AATGTATCGATACAAAAGTGTTGTATCGATAC
Found at i:759690 original size:21 final size:21
Alignment explanation
Indices: 759664--759705 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
759654 AGCTACTGCC
759664 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
759685 AAGGAAATGTATCGATACATT
1 AAGGAAATGTATCGATACATT
759706 GTATCGATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.43, C:0.10, G:0.19, T:0.29
Consensus pattern (21 bp):
AAGGAAATGTATCGATACATT
Found at i:759710 original size:13 final size:13
Alignment explanation
Indices: 759692--759717 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
759682 ATTAAGGAAA
759692 TGTATCGATACAT
1 TGTATCGATACAT
759705 TGTATCGATACAT
1 TGTATCGATACAT
759718 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:762138 original size:48 final size:50
Alignment explanation
Indices: 762085--762204 Score: 156
Period size: 53 Copynumber: 2.4 Consensus size: 50
762075 CAATTCTCCG
* *
762085 CAATCGGGGATATTCCAACTCTGATTTTA-TT-AAAACACCAA-TTTTCTA
1 CAATCGGGGATACTCCAACTCCGATTTTATTTAAAAACACCAATTTTTC-A
*
762133 TAATCGGGGATACTCCAACTCCGATTTTATTTTCAAAAAACACCAATTTTTCA
1 CAATCGGGGATACTCCAACTCCGATTTTA-TTT--AAAAACACCAATTTTTCA
762186 CAATCGGGGATACTCCAAC
1 CAATCGGGGATACTCCAAC
762205 CCCGTTAATC
Statistics
Matches: 62, Mismatches: 4, Indels: 7
0.85 0.05 0.10
Matches are distributed among these distances:
48 26 0.42
50 2 0.03
53 29 0.47
54 5 0.08
ACGTcount: A:0.33, C:0.23, G:0.12, T:0.32
Consensus pattern (50 bp):
CAATCGGGGATACTCCAACTCCGATTTTATTTAAAAACACCAATTTTTCA
Found at i:762218 original size:27 final size:28
Alignment explanation
Indices: 762188--762263 Score: 111
Period size: 27 Copynumber: 2.8 Consensus size: 28
762178 ATTTTTCACA
762188 ATCGGGGATACTCCAACCCCGTTA-ATC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
762215 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATATC
*
762243 -TGAGGGGATACTCCAACCCCG
1 AT-CGGGGATACTCCAACCCCG
762264 GCTTTATTCT
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
27 25 0.56
28 20 0.44
ACGTcount: A:0.24, C:0.33, G:0.21, T:0.22
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATATC
Found at i:762310 original size:79 final size:79
Alignment explanation
Indices: 762215--762498 Score: 416
Period size: 79 Copynumber: 3.6 Consensus size: 79
762205 CCCGTTAATC
762215 ATCGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGCTTTATTCTTAAAA
762279 TATTGATTTCTCATA
65 TATTGATTTCTCATA
* *
762294 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGTATACTCCAACCCCAGCTTTATTCTTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAAT
762359 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* *
762373 ATCGGGGATACCCCAACCCCGTTA-TTTCTGA-GGGATACTCCAACCTCGG-TTTCATT-TCTAA
1 ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGCTTT-ATTCT-TAA
* ** *
762434 AACATCAATTTTTCATA
63 AATATTGATTTCTCATA
*
762451 ATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCC
762499 ATTATTTCCG
Statistics
Matches: 187, Mismatches: 12, Indels: 12
0.89 0.06 0.06
Matches are distributed among these distances:
77 4 0.02
78 63 0.34
79 116 0.62
80 4 0.02
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAAT
ATTGATTTCTCATA
Found at i:762459 original size:157 final size:158
Alignment explanation
Indices: 762215--762499 Score: 461
Period size: 157 Copynumber: 1.8 Consensus size: 158
762205 CCCGTTAATC
* *
762215 ATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAAT
1 ATCGGGGATACCCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAAC
**
762280 ATTGATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCG-AGGGTATACTCCAACCCCAG
66 ATCAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGG-ATACTCCAACCCCAG
762344 CTTTATTCTTAAAATATTGATTTCTCATA
130 CTTTATTCTTAAAATATTGATTTCTCATA
*
762373 ATCGGGGATACCCCAACCCCGTTATTTCTGA-GGGATACTCCAACCTCGG-TTTCATT-TCTAAA
1 ATCGGGGATACCCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGCTTT-ATTCT-TAAA
*
762435 ACATCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCA
64 ACATCAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCA
762500 TTATTTCCGA
Statistics
Matches: 118, Mismatches: 6, Indels: 7
0.90 0.05 0.05
Matches are distributed among these distances:
156 4 0.03
157 80 0.68
158 34 0.29
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.31
Consensus pattern (158 bp):
ATCGGGGATACCCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGCTTTATTCTTAAAAC
ATCAATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTTCGAAGGGATACTCCAACCCCAGC
TTTATTCTTAAAATATTGATTTCTCATA
Found at i:762495 original size:28 final size:28
Alignment explanation
Indices: 762455--762527 Score: 119
Period size: 28 Copynumber: 2.6 Consensus size: 28
762445 TTCATAATCG
*
762455 GGGATACTCCAACCCCGTTATTTTCGAA
1 GGGATACTCCAACCCCGTTATTTCCGAA
* *
762483 GGGATACTCCAACCCCATTATTTCCGAG
1 GGGATACTCCAACCCCGTTATTTCCGAA
762511 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
762528 GCTTTATTTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (28 bp):
GGGATACTCCAACCCCGTTATTTCCGAA
Found at i:762504 original size:106 final size:107
Alignment explanation
Indices: 762377--762577 Score: 273
Period size: 107 Copynumber: 1.9 Consensus size: 107
762367 CTCATAATCG
* * * *
762377 GGGATACCCCAACCCCGTTATTTCTGA-GGGATACTCCAACCTCGG-TTTCATTTCTAAAACATC
1 GGGATACCCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGGCTTT-ATTTCCAAAACATC
* *
762440 AATTTTTCATAATCGGGGATAC-TCCAACCCCGTTATTTTCGAA
65 AATTTCTCACAATCGGGGATACGT-CAACCCCGTTATTTTCGAA
* * **
762483 GGGATACTCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTG
1 GGGATACCCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACATCA
762548 ATTTCTCACAATCGGGGATACGTCAACCCC
66 ATTTCTCACAATCGGGGATACGTCAACCCC
762578 AGCCTTATTT
Statistics
Matches: 82, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
106 24 0.29
107 54 0.66
108 4 0.05
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (107 bp):
GGGATACCCCAACCCCATTATTTCCGAGGGGATACTCCAACCCCGGCTTTATTTCCAAAACATCA
ATTTCTCACAATCGGGGATACGTCAACCCCGTTATTTTCGAA
Found at i:762586 original size:51 final size:51
Alignment explanation
Indices: 762510--762629 Score: 179
Period size: 51 Copynumber: 2.4 Consensus size: 51
762500 TTATTTCCGA
* *
762510 GGGGATACTCCAACCCCGGCTTTATTTCCAAAATATTGATTTCTCACAATC
1 GGGGATACTCCAACCCCAGCCTTATTTCCAAAATATTGATTTCTCACAATC
* *
762561 GGGGATACGT-CAACCCCAGCCTTATTTCTAAAATATTGATTTCTCATAATC
1 GGGGATAC-TCCAACCCCAGCCTTATTTCCAAAATATTGATTTCTCACAATC
*
762612 GGAGATACTCCAACCCCA
1 GGGGATACTCCAACCCCA
762630 TTATTTTCAC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 1 0.02
51 60 0.97
52 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (51 bp):
GGGGATACTCCAACCCCAGCCTTATTTCCAAAATATTGATTTCTCACAATC
Found at i:762643 original size:79 final size:79
Alignment explanation
Indices: 762561--762710 Score: 164
Period size: 79 Copynumber: 1.9 Consensus size: 79
762551 TCTCACAATC
* *
762561 GGGGATACGT-CAACCCCAGCCTTATTTCTAAAATATTGATTTCTCATAATCGGAGATACTCCAA
1 GGGGATAC-TCCAACCCCAGCTTTATTTCTAAAATATTGATTTCTCATAATCGGGGATACTCCAA
*
762625 CCCCATTATTTTC-A
65 CCCCGTTATTTTCGA
* * * *
762639 CGGGGATACTCCAACCCC-GATTTTATTTTTAAAACATCGATTT-TCTATAATCGGGGATACTCC
1 -GGGGATACTCCAACCCCAG-CTTTATTTCTAAAATATTGATTTCTC-ATAATCGGGGATACTCC
*
762702 AGCCCCGTT
63 AACCCCGTT
762711 GTTATCTCCA
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 4 0.07
79 56 0.93
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
GGGGATACTCCAACCCCAGCTTTATTTCTAAAATATTGATTTCTCATAATCGGGGATACTCCAAC
CCCGTTATTTTCGA
Found at i:765284 original size:51 final size:51
Alignment explanation
Indices: 765207--765341 Score: 159
Period size: 51 Copynumber: 2.6 Consensus size: 51
765197 GATATACCTT
* *
765207 ATACATTTACT-ATTTATATCGATACATTCTGGGCTTTAA-CCTAGAAGTATCG
1 ATACATTT-CTCA-TTATATCAATACATTCTAGGCTTTAACCCT-GAAGTATCG
* * *
765259 ATACATTTTTCATTATATCAATACATTCTAGGTTTTAACCCTGATGTATCG
1 ATACATTTCTCATTATATCAATACATTCTAGGCTTTAACCCTGAAGTATCG
* *
765310 ATACATTTCTCAATGTATCAATACATTC-AGGC
1 ATACATTTCTCATTATATCAATACATTCTAGGC
765342 ATTTTGGACC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
50 3 0.04
51 57 0.79
52 12 0.17
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (51 bp):
ATACATTTCTCATTATATCAATACATTCTAGGCTTTAACCCTGAAGTATCG
Found at i:767887 original size:158 final size:159
Alignment explanation
Indices: 767599--767987 Score: 491
Period size: 158 Copynumber: 2.5 Consensus size: 159
767589 TCATTAATGT
* * * *
767599 TTTTAT-TTCTAAAACATCGATTTTTCGCCATCGAGGATACTCCAATCCCATTATTTTCGAGGGG
1 TTTTATCTCCTAAAACATCGATTTTTCACCATCGGGGATACTCCAA-CCCATTATTTTTGAGGGG
* *
767663 ATACTCCAA-CTACGATTTTATTTCTAAAACACCGATTTTCCACCATTAACGATACTCCAACCCC
65 ATACTCCAACCTACGATTTTATTTCTAAAACACCGATTTTCCACCATCAACGACACTCCAACCCC
*
767727 GTTATTTTCGAGGGGATACTCCAACCCCAA
130 GTTATTTTCGAGAGGATACTCCAACCCCAA
* *
767757 TTTTA-CTCCTAAAACATCGATTTTTCACTATCGGGGATACTCCAACCCTGTTATTTTTGAGGGG
1 TTTTATCTCCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCC-ATTATTTTTGAGGGG
* * **
767821 ATACTCCAACCT-CGGTTTTATTTCTAAAACATCGATTTTCCACCATCAGGGACACTCCAACCCC
65 ATACTCCAACCTACGATTTTATTTCTAAAACACCGATTTTCCACCATCAACGACACTCCAACCCC
* **
767885 GTTATTTTGGAGAGGATACTCCAACCCCTT
130 GTTATTTTCGAGAGGATACTCCAACCCCAA
* * * * * * * * * *
767915 TTTTATTTCC-AAAATATTGATTTCTCACCATTGGGGATACCCCACCCCATTGTGTTTGAGAGGA
1 TTTTATCTCCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCATTATTTTTGAGGGGA
767979 TACTCCAAC
66 TACTCCAAC
767988 ACCGTTTTAT
Statistics
Matches: 199, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
157 24 0.12
158 170 0.85
159 5 0.03
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (159 bp):
TTTTATCTCCTAAAACATCGATTTTTCACCATCGGGGATACTCCAACCCATTATTTTTGAGGGGA
TACTCCAACCTACGATTTTATTTCTAAAACACCGATTTTCCACCATCAACGACACTCCAACCCCG
TTATTTTCGAGAGGATACTCCAACCCCAA
Found at i:767910 original size:79 final size:79
Alignment explanation
Indices: 767599--767997 Score: 421
Period size: 79 Copynumber: 5.1 Consensus size: 79
767589 TCATTAATGT
* * * *
767599 TTTTATTTCTAAAACATCGATTTTTCGCCATC-GAGGATACTCCAATCCCATTATTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTCCACCATCAG-GGATACTCCAACCCCGTTATTTTCGAGGGG
**
767663 ATACTCCAACTACGA
65 ATACTCCAACCCCGA
* * **
767678 TTTTATTTCTAAAACACCGATTTTCCACCATTAACGATACTCCAACCCCGTTATTTTCGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
*
767743 TACTCCAACCCCAA
66 TACTCCAACCCCGA
* * * * * * *
767757 TTTTACTCCTAAAACATCGATTTTTCACTATCGGGGATACTCCAACCCTGTTATTTTTGAGGGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
* *
767822 TACTCCAACCTCGG
66 TACTCCAACCCCGA
* * *
767836 TTTTATTTCTAAAACATCGATTTTCCACCATCAGGGACACTCCAACCCCGTTATTTTGGAGAGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
**
767901 TACTCCAACCCCTT
66 TACTCCAACCCCGA
* * * ** * * * *
767915 TTTTATTTCCAAAATATTGA-TTTCTCACCATTGGGGATAC-CCCACCCCATTGTGTTT-GAGAG
1 TTTTATTTCTAAAACATCGATTTTC-CACCATCAGGGATACTCCAACCCCGTTAT-TTTCGAGGG
*
767977 GATACTCCAACACCG-
64 GATACTCCAACCCCGA
767992 TTTTAT
1 TTTTAT
767998 CTCCAAAATA
Statistics
Matches: 269, Mismatches: 48, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
77 6 0.02
78 32 0.12
79 231 0.86
ACGTcount: A:0.27, C:0.27, G:0.14, T:0.33
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCGATTTTCCACCATCAGGGATACTCCAACCCCGTTATTTTCGAGGGGA
TACTCCAACCCCGA
Found at i:771242 original size:20 final size:20
Alignment explanation
Indices: 771189--771243 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 20
771179 AAATTCCCAG
**
771189 ATGTATCGATACAAAGATCA
1 ATGTATCGATACATTGATCA
771209 ATGTATCGATACATTGAGT-A
1 ATGTATCGATACATTGA-TCA
771229 ATGTATCGATACATT
1 ATGTATCGATACATT
771244 TCCTTGGCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 31 0.97
21 1 0.03
ACGTcount: A:0.38, C:0.13, G:0.16, T:0.33
Consensus pattern (20 bp):
ATGTATCGATACATTGATCA
Found at i:771297 original size:19 final size:19
Alignment explanation
Indices: 771273--771437 Score: 162
Period size: 19 Copynumber: 8.7 Consensus size: 19
771263 AGCGATACAT
771273 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
771292 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
771305 TGTATTGATACAACACTTA
1 TGTATCGATACAACACTTA
* *
771324 TGTATCGATACAATTACTGTT
1 TGTATCGATACAA-CACT-TA
771345 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
* *
771364 TGTATCGATACAATTACTGTT
1 TGTATCGATACAA-CACT-TA
771385 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
* * *
771404 TGTATCGATATAATTACTGTT
1 TGTATCGATACAA-CACT-TA
771425 TGTATCGATACAA
1 TGTATCGATACAA
771438 ATTGTTGAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 22
0.77 0.09 0.14
Matches are distributed among these distances:
13 8 0.07
14 1 0.01
16 6 0.05
18 1 0.01
19 48 0.40
20 15 0.12
21 41 0.34
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:771306 original size:32 final size:34
Alignment explanation
Indices: 771260--771418 Score: 155
Period size: 40 Copynumber: 4.4 Consensus size: 34
771250 GCAGTAGCTT
*
771260 TGTAGCGATAC-A-TTGTATCGATACAACACTTA
1 TGTATCGATACAATTTGTATCGATACAACACTTA
*
771292 TGTATCGATAC-A-TTGTATTGATACAACACTTA
1 TGTATCGATACAATTTGTATCGATACAACACTTA
771324 TGTATCGATACAATTACTGTTTGTATCGATACAACACTTA
1 TGTATCGATAC-A--A---TTTGTATCGATACAACACTTA
771364 TGTATCGATACAATTACTGTTTGTATCGATACAACACTTA
1 TGTATCGATAC-A--A---TTTGTATCGATACAACACTTA
*
771404 TGTATCGATATAATT
1 TGTATCGATACAATT
771419 ACTGTTTGTA
Statistics
Matches: 115, Mismatches: 4, Indels: 14
0.86 0.03 0.11
Matches are distributed among these distances:
32 41 0.36
34 2 0.02
36 1 0.01
37 1 0.01
39 1 0.01
40 69 0.60
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.37
Consensus pattern (34 bp):
TGTATCGATACAATTTGTATCGATACAACACTTA
Found at i:771350 original size:21 final size:21
Alignment explanation
Indices: 771324--771437 Score: 155
Period size: 21 Copynumber: 5.6 Consensus size: 21
771314 ACAACACTTA
771324 TGTATCGATACAATTACTGTT
1 TGTATCGATACAATTACTGTT
* *
771345 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATTACTGTT
771364 TGTATCGATACAATTACTGTT
1 TGTATCGATACAATTACTGTT
* *
771385 TGTATCGATACAA-CACT-TA
1 TGTATCGATACAATTACTGTT
*
771404 TGTATCGATATAATTACTGTT
1 TGTATCGATACAATTACTGTT
771425 TGTATCGATACAA
1 TGTATCGATACAA
771438 ATTGTTGAAA
Statistics
Matches: 79, Mismatches: 10, Indels: 8
0.81 0.10 0.08
Matches are distributed among these distances:
19 27 0.34
20 12 0.15
21 40 0.51
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.39
Consensus pattern (21 bp):
TGTATCGATACAATTACTGTT
Found at i:771359 original size:40 final size:40
Alignment explanation
Indices: 771304--771437 Score: 250
Period size: 40 Copynumber: 3.4 Consensus size: 40
771294 TATCGATACA
*
771304 TTGTATTGATACAACACTTATGTATCGATACAATTACTGT
1 TTGTATCGATACAACACTTATGTATCGATACAATTACTGT
771344 TTGTATCGATACAACACTTATGTATCGATACAATTACTGT
1 TTGTATCGATACAACACTTATGTATCGATACAATTACTGT
*
771384 TTGTATCGATACAACACTTATGTATCGATATAATTACTGT
1 TTGTATCGATACAACACTTATGTATCGATACAATTACTGT
771424 TTGTATCGATACAA
1 TTGTATCGATACAA
771438 ATTGTTGAAA
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 92 1.00
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.39
Consensus pattern (40 bp):
TTGTATCGATACAACACTTATGTATCGATACAATTACTGT
Found at i:772154 original size:78 final size:79
Alignment explanation
Indices: 771957--772321 Score: 321
Period size: 79 Copynumber: 4.6 Consensus size: 79
771947 TTTTGTGCAT
* * ***
771957 ACCATCGGGGATACTCCAACCTCGTTATTTTCGAGAGGACACTCTAACCCCAATTTTATTTCTAA
1 ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCTAACCCTGGTTTTATTTCTAA
**
772022 AACACCAATTTTCC
66 AACACTGATTTTCC
* * * * *
772036 ACCATCGGGGATACTCCAATCCTGTTATTTTCGAGAGGATACTCTAATCTTGGTTTTATTCCTAA
1 ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCTAACCCTGGTTTTATTTCTAA
772101 AACACTGATTTT-C
66 AACACTGATTTTCC
* * *
772114 ACCAGT-GGGGATACTCTAACCCCGTTATTTTCGAGGGGATA-TCTAACCCTGGTTTTATTTTTA
1 ACCA-TCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCTAACCCTGGTTTTATTTCTA
*
772177 AAACATTGATTTTCC
65 AAACACTGATTTTCC
* * * * * * * *** *
772192 ACCATCGAGGACATTCTAACCCCGTTA-ATTCTA-ACGGGATACTCCAACCCCATTTTTATTTCC
1 ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGA--GGATACTCTAACCCTGGTTTTATTTCT
*
772255 AAAATA-TCGA-TTTCTC
64 AAAACACT-GATTTTC-C
* * * * ** *
772271 ACCATTGGGGATACCCCAACCACGTTGTTTTCGAGAACATACTCCAACCCT
1 ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCTAACCCT
772322 ATTTTTATCT
Statistics
Matches: 229, Mismatches: 47, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
77 35 0.15
78 69 0.30
79 120 0.52
80 4 0.02
81 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (79 bp):
ACCATCGGGGATACTCCAACCCCGTTATTTTCGAGAGGATACTCTAACCCTGGTTTTATTTCTAA
AACACTGATTTTCC
Found at i:772775 original size:118 final size:117
Alignment explanation
Indices: 772564--772800 Score: 402
Period size: 118 Copynumber: 2.0 Consensus size: 117
772554 CCTTCATCCT
* *
772564 TCTTATGTATTTTTGTGTGTTATTTTGTGTGAATTTGTTCGTTATTTTTTGTTTTACTAATATGT
1 TCTTATGTATTTGTGTGTGTTATTTTGTGTGAATTTGTTCGTTATTTTTTGTTTTACTAACATGT
**
772629 TTCCTTTCATAAAGACATTGTGTTTTCATGCTTTAGAAAACTATTTTTAAAGA
66 TTCCTTTCATAAAGACATTGTGCATTCATGCTTTA-AAAACTATTTTTAAAGA
772682 TCTTATGTATTTGTGTGTGTTATTTTGTGTGAATTTGTTCGTTATTTTTTGTTTTACTAACATGT
1 TCTTATGTATTTGTGTGTGTTATTTTGTGTGAATTTGTTCGTTATTTTTTGTTTTACTAACATGT
* * *
772747 TTCCTTTCGTAAGGACCTTGTGCATTCATGCTTTAAAAACTATTTTTAAAGA
66 TTCCTTTCATAAAGACATTGTGCATTCATGCTTTAAAAACTATTTTTAAAGA
772799 TC
1 TC
772801 ACAAAATGAT
Statistics
Matches: 112, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
117 19 0.17
118 93 0.83
ACGTcount: A:0.22, C:0.10, G:0.15, T:0.53
Consensus pattern (117 bp):
TCTTATGTATTTGTGTGTGTTATTTTGTGTGAATTTGTTCGTTATTTTTTGTTTTACTAACATGT
TTCCTTTCATAAAGACATTGTGCATTCATGCTTTAAAAACTATTTTTAAAGA
Found at i:774465 original size:17 final size:17
Alignment explanation
Indices: 774443--774481 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
774433 GAGGTGCATA
* *
774443 TTTATTTTTTTTTTTTT
1 TTTATTTATTTTGTTTT
774460 TTTATTTATTTTGTTTT
1 TTTATTTATTTTGTTTT
*
774477 GTTAT
1 TTTAT
774482 GTACAATCAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.10, C:0.00, G:0.05, T:0.85
Consensus pattern (17 bp):
TTTATTTATTTTGTTTT
Found at i:785854 original size:61 final size:61
Alignment explanation
Indices: 785757--786460 Score: 659
Period size: 61 Copynumber: 11.4 Consensus size: 61
785747 AACCTTTTAT
* * * * *
785757 CCTTTTAGTCCTCAAAAAGCAGGACG-CTTTCTCCTTTCAAAGCCCACACAAGTTAGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * **
785818 CCTTTCAGTCCTCAAAGAACAAGGTGCCTTCCCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * **
785879 CCTTTTAGTCCTTAGAGAGCAAGATGCCTTTTTCCTTTTAAAGCCCAAATAAACTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * * * *
785941 CCTTCTAGTCCTCAAAGTGTAGGATGGCTTTTCCTTTCAAAGCCCACACAAGTTAGTGGTA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
786002 CCTTTTAGTCCTTAGAGAGCATGACGCCTTCTT-CTTTTAAAGCCCACACAAGTTGGTGGAA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTT-TTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * * *
786063 GCTTTCAGTCCTCAAAGAGCATGACATTTTCCTTTTTTCTTTTAAAGCCCACACAAGTTGGCGGC
1 CCTTTTAGTCCTCAAAGAGCA--AGA--TGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGGC
786128 A
61 A
* * * *
786129 CCTTCTAGTCCTTAAAGAGTAAGA--CATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
786188 CCTTTTAGTCCTCAAAAAGCAAGATGCCTTTTCTTTTTAAAGCCTACACAAGTTGGTGGCA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
* * * * *
786249 CCTTTTAGTCCTCAAAGAGTAAGACGTC-TTTCCTTTTTAAAGCCCACACAAGTTGGTAGTA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCC-TTTTAAAGCCCACACAAGTTGGTGGCA
* ** * * *
786310 GCTTTTAGTCCTCAAAGAGCAAGACACCTTTT-ATTTTCAAAGCTCACACAAGTTGGTGACA
1 CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCA
** * * * * ** *
786371 TTTTTTAGTCCTCAAAGAGTGAGACACTTCCTTTTTTCTTTTAAAGCCCACACAAACTAGTGGCA
1 CCTTTTAGTCCTCAAAGAG-CA-AGA-TGCC-TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
*
786436 CCTTCTAGTCCTC-AA-AGCAAGATGC
1 CCTTTTAGTCCTCAAAGAGCAAGATGC
786461 TTCTCTCTTT
Statistics
Matches: 517, Mismatches: 107, Indels: 39
0.78 0.16 0.06
Matches are distributed among these distances:
59 51 0.10
60 11 0.02
61 302 0.58
62 58 0.11
63 5 0.01
64 6 0.01
65 36 0.07
66 48 0.09
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (61 bp):
CCTTTTAGTCCTCAAAGAGCAAGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:786360 original size:308 final size:308
Alignment explanation
Indices: 785850--786452 Score: 820
Period size: 308 Copynumber: 2.0 Consensus size: 308
785840 GGTGCCTTCC
* * *
785850 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTTAGAGAGCAAGATGCCTTTTTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCT
* * * *
785915 TTTAAAGCCCAAATAAACTGGTGGCACCTTCTAGTCCTCAAAGTGTAGGATGGCTTTTCCTTTCA
66 TTTAAAGCCCAAACAAACTGGTGGCACCTTCTAGTCCTCAAAGAGTAAGACGGCTTTTCCTTTCA
* * * * * *
785980 AAGCCCACACAAGTTAGTGGTACCTTTTAGTCCTTAGAGAGCATGACGCCTTCTTCTTTTAAAGC
131 AAGCCCACACAAGTTAGTAGTACCTTTTAGTCCTCAAAGAGCAAGACACCTTCTTATTTTAAAGC
*
786045 CCACACAAGTTGGTGGA-AGCTTTCAGTCCTCAAAGAG-CATGACATTTTCCTTTTTTCTTTTAA
196 CCACACAAGTTGGT-GACAGCTTTCAGTCCTCAAAGAGTCA-GACA-CTTCCTTTTTTCTTTTAA
** * *
786108 AGCCCACACAAGTTGGCGGCACCTTCTAGTCCTTAAAGAGTAAGACATTTT
258 AGCCCACACAAACTAGCGGCACCTTCTAGTCCTCAAAGAGTAAGACATTTT
*
786159 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGATGCC-TTTTCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCT
* * ** * * *
786223 TTTAAAGCCTACACAAGTTGGTGGCACCTTTTAGTCCTCAAAGAGTAAGACGTC-TTTCCTTTTT
66 TTTAAAGCCCAAACAAACTGGTGGCACCTTCTAGTCCTCAAAGAGTAAGACGGCTTTTCC-TTTC
* *
786287 AAAGCCCACACAAGTTGGTAGTAGCTTTTAGTCCTCAAAGAGCAAGACACCTT-TTATTTTCAAA
130 AAAGCCCACACAAGTTAGTAGTACCTTTTAGTCCTCAAAGAGCAAGACACCTTCTTATTTT-AAA
* ** * *
786351 GCTCACACAAGTTGGTGACATTTTTTAGTCCTCAAAGAGTGAGACACTTCCTTTTTTCTTTTAAA
194 GCCCACACAAGTTGGTGACAGCTTTCAGTCCTCAAAGAGTCAGACACTTCCTTTTTTCTTTTAAA
*
786416 GCCCACACAAACTAGTGGCACCTTCTAGTCCTCAAAG
259 GCCCACACAAACTAGCGGCACCTTCTAGTCCTCAAAG
786453 CAAGATGCTT
Statistics
Matches: 256, Mismatches: 34, Indels: 10
0.85 0.11 0.03
Matches are distributed among these distances:
307 63 0.25
308 138 0.54
309 55 0.21
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (308 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTCCTCAAAAAGCAAGATGCCTTTTTCCT
TTTAAAGCCCAAACAAACTGGTGGCACCTTCTAGTCCTCAAAGAGTAAGACGGCTTTTCCTTTCA
AAGCCCACACAAGTTAGTAGTACCTTTTAGTCCTCAAAGAGCAAGACACCTTCTTATTTTAAAGC
CCACACAAGTTGGTGACAGCTTTCAGTCCTCAAAGAGTCAGACACTTCCTTTTTTCTTTTAAAGC
CCACACAAACTAGCGGCACCTTCTAGTCCTCAAAGAGTAAGACATTTT
Found at i:786472 original size:247 final size:241
Alignment explanation
Indices: 785757--786472 Score: 751
Period size: 247 Copynumber: 2.9 Consensus size: 241
785747 AACCTTTTAT
* * * * * * *
785757 CCTTTTAGTCCTCAAAAAGCAGGACGCTTTCTCCTTTCAAAGCCCACACAAGTTAGTGGCACCTT
1 CCTTTTAGTCCTCAAAGAGCAAGACGCTTTC-CTTTTTAAAGCCCACACAAGTTGGTGGAAGCTT
* *** ***
785822 TCAGTCCTCAAAGAACAAGGTGCCTTCCCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
65 TCAGTCCTCAAAGAGCAAGACACCTT-TTATTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
785887 TCCTTAGAGAGCAAG--ATGCCTTTTTCCTTTTAAAGCCCAAATAAACTGGTGGCACCTTCTAGT
129 TCCTTAAAGAGTAAGACAT-CCTTTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTAGT
* * * * *
785950 CCTCAAAGTGTAGGATGGCTTTTCCTTTCAAAGCCCACACAAGTTAGTGGTA
193 CCTCAAA--GCAAGAT-GCTTTTCTTTTTAAAGCCCACACAAGTTAGTGGCA
* * * * *
786002 CCTTTTAGTCCTTAGAGAGCATGACGCCTTCTTCTTTTAAAGCCCACACAAGTTGGTGGAAGCTT
1 CCTTTTAGTCCTCAAAGAGCAAGACGCTTTCCT-TTTTAAAGCCCACACAAGTTGGTGGAAGCTT
* * *
786067 TCAGTCCTCAAAGAGCATGACATTTTCCTTTTTTCTTTTAAAGCCCACACAAGTTGGCGGCACCT
65 TCAGTCCTCAAAGAGCAAGACA----CC--TTTTATTTTAAAGCCCACACAAGTTGGTGGCACCT
* ** *
786132 TCTAGTCCTTAAAGAGTAAGACA----TTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
124 TTTAGTCCTTAAAGAGTAAGACATCCTTTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTC
* *
786193 TAGTCCTCAAAAAGCAAGATGCCTTTTCTTTTTAAAGCCTACACAAGTTGGTGGCA
189 TAGTCCTC--AAAGCAAGATG-CTTTTCTTTTTAAAGCCCACACAAGTTAGTGGCA
* * *
786249 CCTTTTAGTCCTCAAAGAGTAAGACGTCTTTCCTTTTTAAAGCCCACACAAGTTGGTAGTAGCTT
1 CCTTTTAGTCCTCAAAGAGCAAGACG-CTTTCCTTTTTAAAGCCCACACAAGTTGGTGGAAGCTT
* * * **
786314 TTAGTCCTCAAAGAGCAAGACACCTTTTATTTTCAAAGCTCACACAAGTTGGTGACATTTTTTAG
65 TCAGTCCTCAAAGAGCAAGACACCTTTTATTTT-AAAGCCCACACAAGTTGGTGGCACCTTTTAG
* * * *
786379 TCCTCAAAGAGTGAGACACTTCCTTTTTTCTTTTAAAGCCCACACAAACTAGTGGCACCTTCTAG
129 TCCTTAAAGAGTAAGACA--TCCTTTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTAG
786444 TCCTCAAAGCAAGATGCTTCTCTCTTTTT
192 TCCTCAAAGCAAGATGCTT-T-TCTTTTT
786473 CTATCTCAAA
Statistics
Matches: 391, Mismatches: 58, Indels: 42
0.80 0.12 0.09
Matches are distributed among these distances:
241 8 0.02
242 41 0.10
243 2 0.01
245 73 0.19
246 13 0.03
247 153 0.39
248 46 0.12
249 5 0.01
250 47 0.12
251 2 0.01
252 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.31
Consensus pattern (241 bp):
CCTTTTAGTCCTCAAAGAGCAAGACGCTTTCCTTTTTAAAGCCCACACAAGTTGGTGGAAGCTTT
CAGTCCTCAAAGAGCAAGACACCTTTTATTTTAAAGCCCACACAAGTTGGTGGCACCTTTTAGTC
CTTAAAGAGTAAGACATCCTTTTTCCTTTTAAAGCCCACACAAACTGGTGGCACCTTCTAGTCCT
CAAAGCAAGATGCTTTTCTTTTTAAAGCCCACACAAGTTAGTGGCA
Found at i:786976 original size:13 final size:13
Alignment explanation
Indices: 786958--786984 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
786948 GCATGCCTTT
786958 AATGTATCGATAC
1 AATGTATCGATAC
786971 AATGTATCGATAC
1 AATGTATCGATAC
786984 A
1 A
786985 TGCATAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:786980 original size:34 final size:34
Alignment explanation
Indices: 786937--787003 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
786927 TTTTTTATGA
* * **
786937 AATGTATCGATGCATGCCTTTAATGTATCGATAC
1 AATGTATCGATACATGCATAAAATGTATCGATAC
786971 AATGTATCGATACATGCATAAAATGTATCGATA
1 AATGTATCGATACATGCATAAAATGTATCGATA
787004 GAAAACCACC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (34 bp):
AATGTATCGATACATGCATAAAATGTATCGATAC
Found at i:789545 original size:79 final size:79
Alignment explanation
Indices: 789413--789804 Score: 331
Period size: 79 Copynumber: 5.0 Consensus size: 79
789403 TCATTGATGT
* * ** * * *
789413 TTTTATTTATAAAATATCGATTTTCCACCATCGGAAATACTCCAATCCTGTTATTTCCGAAAAGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAAGA
* *
789478 TACTCTAACCCTAA
66 TACTCCAACCCCAA
*
789492 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAGGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAAGA
****
789557 TACTCCAACCTTGG
66 TACTCCAACCCCAA
* * * * * * * **
789571 TTTTATTCCTAAAACACCGATTTTCGACCACCGAGGATACTCTAACCCCGTTA-TTTCTAAGGGG
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAA-AAG
*
789635 ATACTCTC-ACCCCGA
65 ATACTC-CAACCCCAA
* * * * * * * * **
789650 TTTTATTTCTAAAACACCGATTTTTCACCATTGAGGACACTCTAACCTCATTATTTTCGAGGAGA
1 TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAAGA
*
789715 TACTCCAACCCCAT
66 TACTCCAACCCCAA
* * * * * * * ***
789729 TTTTATTTCCAAAATATCGA-TTTCTCACCATTGGCGATACCCCAACCCCATTGTTTTCGAGGGG
1 TTTTATTTCTAAAACATCGATTTTC-CACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAAG
789793 ATACTCCAACCC
65 ATACTCCAACCC
789805 TCTTTTTATC
Statistics
Matches: 260, Mismatches: 48, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
78 10 0.04
79 244 0.94
80 6 0.02
ACGTcount: A:0.28, C:0.27, G:0.12, T:0.33
Consensus pattern (79 bp):
TTTTATTTCTAAAACATCGATTTTCCACCATCGGGGATACTCCAACCCCGTTATTTTCGAAAAGA
TACTCCAACCCCAA
Found at i:796644 original size:32 final size:31
Alignment explanation
Indices: 796608--796707 Score: 80
Period size: 31 Copynumber: 3.1 Consensus size: 31
796598 TTTATAAGTA
796608 AAAAATATTTTTATATTTTTCAATTTTCAAAT
1 AAAAATATTTTTATATTTTTCAATTTT-AAAT
* **
796640 AAAAA-ATTTTGA-ATTTTTCCAAAGTTAAA-
1 AAAAATATTTTTATATTTTT-CAATTTTAAAT
*
796669 AAAAATGAATTTTTATATTCTATCAATTTTTTAAAT
1 AAAAAT--ATTTTTATATT-TTTCAA--TTTTAAAT
796705 AAA
1 AAA
796708 TTTTCCTTGG
Statistics
Matches: 52, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
29 5 0.10
30 9 0.17
31 11 0.21
32 11 0.21
33 6 0.12
34 2 0.04
35 5 0.10
36 3 0.06
ACGTcount: A:0.45, C:0.06, G:0.03, T:0.46
Consensus pattern (31 bp):
AAAAATATTTTTATATTTTTCAATTTTAAAT
Found at i:797077 original size:20 final size:20
Alignment explanation
Indices: 797052--797089 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
797042 AAATAATTTA
*
797052 TAATAATTTAAATTTTAACT
1 TAATAATATAAATTTTAACT
*
797072 TAATAATATAATTTTTAA
1 TAATAATATAAATTTTAA
797090 TATAAATCTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (20 bp):
TAATAATATAAATTTTAACT
Found at i:797372 original size:15 final size:15
Alignment explanation
Indices: 797341--797374 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
797331 GCAATTACCC
**
797341 TAATACAAACTTGTA
1 TAATACAAACTACTA
797356 TAATACAAACTACTA
1 TAATACAAACTACTA
797371 TAAT
1 TAAT
797375 GTAAACTTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.50, C:0.15, G:0.03, T:0.32
Consensus pattern (15 bp):
TAATACAAACTACTA
Found at i:800857 original size:6 final size:6
Alignment explanation
Indices: 800846--800902 Score: 51
Period size: 6 Copynumber: 9.5 Consensus size: 6
800836 TTTGTTGAGA
* * * * * * *
800846 CTGTTG CTGTTG CTGATG TTGTTG CTGCTG CTGCTG CTGCTG TTGTGG
1 CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG CTGTTG
800894 CTGTTG CTG
1 CTGTTG CTG
800903 CCAAACATTG
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.02, C:0.19, G:0.35, T:0.44
Consensus pattern (6 bp):
CTGTTG
Found at i:801649 original size:2 final size:2
Alignment explanation
Indices: 801644--801674 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
801634 CCCAAAAAAA
801644 AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
801675 TGGGAACTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:806437 original size:24 final size:24
Alignment explanation
Indices: 806390--806435 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 24
806380 ATTTTTTAAA
806390 ATTTATCTATTAATTTATAAAAAT
1 ATTTATCTATTAATTTATAAAAAT
806414 ATTTAT-T-TTAATTTTATAAAAA
1 ATTTATCTATTAA-TTTATAAAAA
806436 ATTAAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.19
23 11 0.52
24 6 0.29
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (24 bp):
ATTTATCTATTAATTTATAAAAAT
Found at i:806811 original size:24 final size:22
Alignment explanation
Indices: 806784--806829 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
806774 TAAAAATTAT
*
806784 TTTTATTTAAATTTAATTATAAAA
1 TTTTATATAAATTT-A-TATAAAA
*
806808 TTTTATATATATTTATATAAAA
1 TTTTATATAAATTTATATAAAA
806830 ATATTTTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 7 0.35
23 1 0.05
24 12 0.60
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTTTATATAAATTTATATAAAA
Found at i:807048 original size:40 final size:40
Alignment explanation
Indices: 807015--807108 Score: 170
Period size: 40 Copynumber: 2.3 Consensus size: 40
807005 TAATATAAGA
*
807015 ATAATATACATTATTAGTATTTAGATTTAATAATACCAAAT
1 ATAATA-AAATTATTAGTATTTAGATTTAATAATACCAAAT
807056 ATAATAAAATTATTAGTATTTAGATTTAATAATACCAAAT
1 ATAATAAAATTATTAGTATTTAGATTTAATAATACCAAAT
807096 ATAATAAAATTAT
1 ATAATAAAATTAT
807109 AAAATATGAA
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
40 46 0.88
41 6 0.12
ACGTcount: A:0.50, C:0.05, G:0.04, T:0.40
Consensus pattern (40 bp):
ATAATAAAATTATTAGTATTTAGATTTAATAATACCAAAT
Found at i:807115 original size:18 final size:18
Alignment explanation
Indices: 807092--807221 Score: 76
Period size: 18 Copynumber: 7.1 Consensus size: 18
807082 TAATAATACC
807092 AAATATAATAAAATTATA
1 AAATATAATAAAATTATA
807110 AAATATGAA-AAAATTAATTA
1 AAATAT-AATAAAATT-A-TA
*
807130 AAATATAATATAAA-TATG
1 AAATATAATA-AAATTATA
* *
807148 TAATATAATAAAAATAATAA
1 AAATATAAT-AAAATTAT-A
807168 AAATATGAATATAAA--AT-
1 AAATAT-AATA-AAATTATA
*
807185 AAATAT-ATAAATATTTTA
1 AAATATAATAAA-ATTATA
* *
807203 AAAT-TTATAAAAATATA
1 AAATATAATAAAATTATA
807220 AA
1 AA
807222 TTAATATAAT
Statistics
Matches: 89, Mismatches: 8, Indels: 31
0.70 0.06 0.24
Matches are distributed among these distances:
14 2 0.02
15 4 0.04
17 14 0.16
18 33 0.37
19 11 0.12
20 16 0.18
21 9 0.10
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATATAATAAAATTATA
Found at i:807153 original size:38 final size:39
Alignment explanation
Indices: 807083--807194 Score: 108
Period size: 38 Copynumber: 2.9 Consensus size: 39
807073 ATTTAGATTT
*
807083 AATAATACCAAATATAATA-AAATTATAAAATATGAA-AAA
1 AATAATA-AAAATATAATATAAATTATAAAATAT-AATAAA
* * **
807122 ATTAATTAAAATATAATATAAA-TATGTAATATAATAAA
1 AATAATAAAAATATAATATAAATTATAAAATATAATAAA
807160 AATAATAAAAATATGAATATAAA--ATAAATATATAA
1 AATAATAAAAATAT-AATATAAATTATAAA-ATATAA
807195 ATATTTTAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
37 2 0.03
38 36 0.60
39 22 0.37
ACGTcount: A:0.65, C:0.02, G:0.03, T:0.30
Consensus pattern (39 bp):
AATAATAAAAATATAATATAAATTATAAAATATAATAAA
Found at i:807187 original size:44 final size:45
Alignment explanation
Indices: 807131--807254 Score: 121
Period size: 44 Copynumber: 2.8 Consensus size: 45
807121 AATTAATTAA
* *
807131 AATATAATATAAATATGT-AATATAATAAAAATAATAAAAATATG
1 AATATAAAATAAATATATAAATATAATAAAAATAATAAAAATATG
** * * *
807175 AATATAAAATAAATATATAAATATTTTAAAATTTATAAAAATATA
1 AATATAAAATAAATATATAAATATAATAAAAATAATAAAAATATG
* *
807220 AAT-TAATAT-AATAT-TAAAATTTATATAAAAATAAT
1 AATATAAAATAAATATAT-AAATATA-ATAAAAATAAT
807255 TATTATATAA
Statistics
Matches: 64, Mismatches: 13, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
42 1 0.02
43 10 0.16
44 29 0.45
45 24 0.38
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (45 bp):
AATATAAAATAAATATATAAATATAATAAAAATAATAAAAATATG
Found at i:807193 original size:39 final size:39
Alignment explanation
Indices: 807092--807252 Score: 99
Period size: 38 Copynumber: 4.1 Consensus size: 39
807082 TAATAATACC
* *
807092 AAATATAATA-AAATTATAA-AATATGA-AAAAATTAATTA
1 AAATATAATATAAA-TA-AATAATATAATAAAAATTAATAA
**
807130 AAATATAATATAAATATGTAATATAATAAAAA-TAATAA
1 AAATATAATATAAATAAATAATATAATAAAAATTAATAA
*
807168 AAATATGAATATAAAATAAAT-ATATAAATATTTTAAAATTTATAA
1 AAATAT-AATAT-AAATAAATAATAT-AATA----AAAATTAATAA
* *
807213 AAATATAA-ATTAAT--ATAATAT--TAAAATTTATATAA
1 AAATATAATATAAATAAATAATATAATAAAAATTA-ATAA
807248 AAATA
1 AAATA
807253 ATTATTATAT
Statistics
Matches: 100, Mismatches: 10, Indels: 29
0.72 0.07 0.21
Matches are distributed among these distances:
34 5 0.05
35 9 0.09
38 31 0.31
39 17 0.17
40 12 0.12
41 4 0.04
42 3 0.03
43 2 0.02
44 6 0.06
45 11 0.11
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (39 bp):
AAATATAATATAAATAAATAATATAATAAAAATTAATAA
Found at i:807233 original size:35 final size:33
Alignment explanation
Indices: 807176--807266 Score: 100
Period size: 33 Copynumber: 2.7 Consensus size: 33
807166 AAAAATATGA
*
807176 ATAT-AAAATAAATATATA-AATATTTTAAAATTT
1 ATATAAAAATAATTATATATAATA--TTAAAATTT
807209 ATA-AAAATATAAATTA-ATATAATATTAAAATTT
1 ATATAAAA-AT-AATTATATATAATATTAAAATTT
807242 ATATAAAAATAATTATTATATAATA
1 ATATAAAAATAATTA-TATATAATA
807267 AATTTTATTA
Statistics
Matches: 50, Mismatches: 1, Indels: 13
0.78 0.02 0.20
Matches are distributed among these distances:
32 5 0.10
33 20 0.40
34 17 0.34
35 8 0.16
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (33 bp):
ATATAAAAATAATTATATATAATATTAAAATTT
Found at i:807268 original size:55 final size:53
Alignment explanation
Indices: 807128--807268 Score: 123
Period size: 55 Copynumber: 2.6 Consensus size: 53
807118 AAAAATTAAT
*
807128 TAAAATATAATAT--AAATA-TGTAATATAATAAAAATAATAAAAATATGAATA
1 TAAAATA-AATATAAAAATATTTTAATATAATAAAAATAATAAAAATATGAATA
* * *
807179 TAAAATAAATATATAAATATTTTAAAATTTATAAAAAT-ATAAATTAATAT-AATA
1 TAAAATAAATATAAAAATATTTTAATA-TAATAAAAATAATAAA--AATATGAATA
**
807233 TTAAAATTTATATAAAAATAATTATT-ATATAATAAA
1 -TAAAATAAATATAAAAAT-ATT-TTAATATAATAAA
807269 TTTTATTAAA
Statistics
Matches: 73, Mismatches: 8, Indels: 14
0.77 0.08 0.15
Matches are distributed among these distances:
50 5 0.07
51 7 0.10
52 5 0.07
53 10 0.14
54 13 0.18
55 26 0.36
56 5 0.07
57 2 0.03
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (53 bp):
TAAAATAAATATAAAAATATTTTAATATAATAAAAATAATAAAAATATGAATA
Found at i:807868 original size:12 final size:11
Alignment explanation
Indices: 807851--807897 Score: 58
Period size: 12 Copynumber: 4.0 Consensus size: 11
807841 TAAATTATGC
807851 TTAAAACAATAT
1 TTAAAA-AATAT
807863 TTAAAAATATAT
1 TTAAAAA-ATAT
*
807875 TAAAAATAATAT
1 TTAAAA-AATAT
807887 TTAAAAAATAT
1 TTAAAAAATAT
807898 AATATAAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
11 6 0.19
12 24 0.77
13 1 0.03
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (11 bp):
TTAAAAAATAT
Found at i:807893 original size:14 final size:13
Alignment explanation
Indices: 807859--807929 Score: 76
Period size: 14 Copynumber: 5.5 Consensus size: 13
807849 GCTTAAAACA
807859 ATATTT-AAAAAT
1 ATATTTAAAAAAT
807871 ATA-TT-AAAAAT
1 ATATTTAAAAAAT
807882 AATATTTAAAAAAT
1 -ATATTTAAAAAAT
*
807896 ATAATATAAAAAAT
1 AT-ATTTAAAAAAT
*
807910 AATATTTACAAAAT
1 -ATATTTAAAAAAT
807924 ATATTT
1 ATATTT
807930 TATACATCAT
Statistics
Matches: 51, Mismatches: 3, Indels: 9
0.81 0.05 0.14
Matches are distributed among these distances:
11 8 0.16
12 6 0.12
13 10 0.20
14 25 0.49
15 2 0.04
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATTTAAAAAAT
Found at i:807901 original size:16 final size:15
Alignment explanation
Indices: 807876--807922 Score: 55
Period size: 16 Copynumber: 3.2 Consensus size: 15
807866 AAAATATATT
807876 AAAAATAATATTTAA
1 AAAAATAATATTTAA
807891 AAAATATAATA--T-A
1 AAAA-ATAATATTTAA
807904 AAAAATAATATTTACA
1 AAAAATAATATTTA-A
807920 AAA
1 AAA
807923 TATATTTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 9
0.75 0.00 0.25
Matches are distributed among these distances:
12 6 0.22
13 5 0.19
14 2 0.07
15 4 0.15
16 10 0.37
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATAATATTTAA
Found at i:807908 original size:28 final size:26
Alignment explanation
Indices: 807853--807926 Score: 98
Period size: 28 Copynumber: 2.8 Consensus size: 26
807843 AATTATGCTT
*
807853 AAAACAATATTT-AAAAATAT-ATTA
1 AAAATAATATTTAAAAAATATAATTA
807877 AAAATAATATTTAAAAAATATAATATAA
1 AAAATAATATTTAAAAAATATAAT-T-A
*
807905 AAAATAATATTTACAAAATATA
1 AAAATAATATTTAAAAAATATA
807927 TTTTATACAT
Statistics
Matches: 44, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
24 11 0.25
25 8 0.18
26 2 0.05
27 1 0.02
28 22 0.50
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (26 bp):
AAAATAATATTTAAAAAATATAATTA
Found at i:809167 original size:21 final size:18
Alignment explanation
Indices: 809138--809197 Score: 57
Period size: 20 Copynumber: 3.1 Consensus size: 18
809128 AAACACGGAA
809138 ATTTATATAATTATATATTTT
1 ATTTATAT-ATT-TATA-TTT
*
809159 ATTTTTATATTTATATTT
1 ATTTATATATTTATATTT
*
809177 ATTTATAACTATTTATTTTT
1 ATTTAT-A-TATTTATATTT
809197 A
1 A
809198 CATTATTAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
18 8 0.24
19 5 0.15
20 14 0.41
21 7 0.21
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTATATATTTATATTT
Found at i:809197 original size:32 final size:31
Alignment explanation
Indices: 809156--809239 Score: 93
Period size: 32 Copynumber: 2.7 Consensus size: 31
809146 AATTATATAT
* *
809156 TTTATTTTTATATT-TATATTTATTTATAACTA
1 TTTATTTTTATATTAT-TAATTATATATAAC-A
*
809188 TTTATTTTTACATTATTAATTATATATAACA
1 TTTATTTTTATATTATTAATTATATATAACA
*
809219 -TTA-TTTTATATAATTAATTAT
1 TTTATTTTTATATTATTAATTAT
809240 TACTAAATAA
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
29 16 0.35
30 3 0.07
31 1 0.02
32 25 0.54
33 1 0.02
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.61
Consensus pattern (31 bp):
TTTATTTTTATATTATTAATTATATATAACA
Found at i:809226 original size:29 final size:32
Alignment explanation
Indices: 809175--809239 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 32
809165 ATATTTATAT
* *
809175 TTATTTATAACTATTTATTTTTACATTATTAA
1 TTATATATAACTATTTATTTTTACATAATTAA
*
809207 TTATATATAAC-A-TTA-TTTTATATAATTAA
1 TTATATATAACTATTTATTTTTACATAATTAA
809236 TTAT
1 TTAT
809240 TACTAAATAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 3 0.10
31 1 0.03
32 10 0.33
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (32 bp):
TTATATATAACTATTTATTTTTACATAATTAA
Found at i:811096 original size:27 final size:29
Alignment explanation
Indices: 811043--811107 Score: 98
Period size: 27 Copynumber: 2.3 Consensus size: 29
811033 ACATTGGCAT
*
811043 AAGTACTTTAAGCACAGGTACTTTGGTAG
1 AAGTACTTTAAGCACAGGTACTTTGGTAC
*
811072 AAGTA-TTTTAGCA-AGGTACTTTGGTAC
1 AAGTACTTTAAGCACAGGTACTTTGGTAC
811099 AAGTACTTT
1 AAGTACTTT
811108 GACAGAAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
27 18 0.55
28 10 0.30
29 5 0.15
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.35
Consensus pattern (29 bp):
AAGTACTTTAAGCACAGGTACTTTGGTAC
Found at i:811106 original size:14 final size:14
Alignment explanation
Indices: 811060--811108 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
811050 TTAAGCACAG
*
811060 GTACTTTGGTAGAA
1 GTACTTTGGTACAA
811074 GTA-TTT--TAGCAA
1 GTACTTTGGTA-CAA
811086 GGTACTTTGGTACAA
1 -GTACTTTGGTACAA
811101 GTACTTTG
1 GTACTTTG
811109 ACAGAAAAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 10
0.73 0.03 0.25
Matches are distributed among these distances:
11 2 0.07
12 2 0.07
13 6 0.21
14 14 0.48
15 3 0.10
16 2 0.07
ACGTcount: A:0.27, C:0.10, G:0.24, T:0.39
Consensus pattern (14 bp):
GTACTTTGGTACAA
Found at i:811157 original size:14 final size:14
Alignment explanation
Indices: 811138--811179 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
811128 GATATTTTTG
811138 GCATAGGTACTTTA
1 GCATAGGTACTTTA
811152 GCATAGGTACTTTTA
1 GCATAGGTAC-TTTA
* *
811167 GTATAAGTACTTT
1 GCATAGGTACTTT
811180 GACATAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 13 0.52
15 12 0.48
ACGTcount: A:0.29, C:0.12, G:0.19, T:0.40
Consensus pattern (14 bp):
GCATAGGTACTTTA
Found at i:811176 original size:15 final size:15
Alignment explanation
Indices: 811133--811308 Score: 63
Period size: 15 Copynumber: 12.2 Consensus size: 15
811123 GTAAAGATAT
* *
811133 TTTTGGCATAGGTAC
1 TTTTAGCATAAGTAC
*
811148 -TTTAGCATAGGTAC
1 TTTTAGCATAAGTAC
*
811162 TTTTAGTATAAGTAC
1 TTTTAGCATAAGTAC
* *
811177 TTTGA-CATAAATA-
1 TTTTAGCATAAGTAC
*
811190 TTTT-G-ATAAAAATAC
1 TTTTAGCAT--AAGTAC
* * *
811205 TTTGA-TATAGGTAC
1 TTTTAGCATAAGTAC
* *
811219 TTTTGGCA-GAGATAC
1 TTTTAGCATAAG-TAC
811234 TTTGTA--A-AAGTAC
1 TTT-TAGCATAAGTAC
*
811247 TTTTGGCATAAGTAC
1 TTTTAGCATAAGTAC
*
811262 -TTTAGCATAGGTACC
1 TTTTAGCATAAGTA-C
811277 TTTT-GCATAAGTACC
1 TTTTAGCATAAGTA-C
* *
811292 TTTT-GTATAGGTAC
1 TTTTAGCATAAGTAC
811306 TTT
1 TTT
811309 CTGTAGCAAC
Statistics
Matches: 123, Mismatches: 23, Indels: 31
0.69 0.13 0.18
Matches are distributed among these distances:
12 3 0.02
13 9 0.07
14 51 0.41
15 54 0.44
16 6 0.05
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41
Consensus pattern (15 bp):
TTTTAGCATAAGTAC
Found at i:811194 original size:57 final size:56
Alignment explanation
Indices: 811123--811290 Score: 146
Period size: 57 Copynumber: 2.9 Consensus size: 56
811113 AAAAACATTG
* * * *
811123 GTAAAGATATTTTTGGCATAGGTACTTTAGCATAGGTACTTTTAGTATAAGTACTTT
1 GTAAAAATACTTTTGGCATAAGTACTTTAGCATAGGTACTTTT-GCATAAGTACTTT
** * * * *
811180 G-ACATAAATA-TTTTGATAAAAATACTTT-GATATAGGTACTTTTGGCA-GAGATACTTT
1 GTA-A-AAATACTTTTGGCATAAGTACTTTAG-CATAGGTACTTTT-GCATAAG-TACTTT
*
811237 GTAAAAGTACTTTTGGCATAAGTACTTTAGCATAGGTACCTTTTGCATAAGTAC
1 GTAAAAATACTTTTGGCATAAGTACTTTAGCATAGGTA-CTTTTGCATAAGTAC
811291 CTTTTGTATA
Statistics
Matches: 85, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
56 8 0.09
57 64 0.75
58 13 0.15
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.39
Consensus pattern (56 bp):
GTAAAAATACTTTTGGCATAAGTACTTTAGCATAGGTACTTTTGCATAAGTACTTT
Found at i:811219 original size:14 final size:14
Alignment explanation
Indices: 811158--811221 Score: 56
Period size: 14 Copynumber: 4.5 Consensus size: 14
811148 TTTAGCATAG
*
811158 GTACTTTTAGTATAA
1 GTACTTTGA-TATAA
*
811173 GTACTTTGACATAA
1 GTACTTTGATATAA
* * *
811187 ATATTTTGATAAAA
1 GTACTTTGATATAA
* *
811201 ATACTTTGATATAG
1 GTACTTTGATATAA
811215 GTACTTT
1 GTACTTT
811222 TGGCAGAGAT
Statistics
Matches: 39, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 31 0.79
15 8 0.21
ACGTcount: A:0.36, C:0.08, G:0.12, T:0.44
Consensus pattern (14 bp):
GTACTTTGATATAA
Found at i:811302 original size:30 final size:30
Alignment explanation
Indices: 811133--811305 Score: 96
Period size: 29 Copynumber: 6.0 Consensus size: 30
811123 GTAAAGATAT
*
811133 TTTTGGCATAGGTACTTTAGCATAGGTA-C
1 TTTTGGCATAAGTACTTTAGCATAGGTACC
* * **
811162 TTTTAGTATAAGTACTTT-GACATAAATA--
1 TTTTGGCATAAGTACTTTAG-CATAGGTACC
** * * *
811190 TTTTGATAAAAATACTTT-GATATAGGTA-C
1 TTTTGGCATAAGTACTTTAG-CATAGGTACC
* * * *
811219 TTTTGGCA-GAGATACTTT-GTAAAAGTA-C
1 TTTTGGCATAAG-TACTTTAGCATAGGTACC
811247 TTTTGGCATAAGTACTTTAGCATAGGTACC
1 TTTTGGCATAAGTACTTTAGCATAGGTACC
* *
811277 TTTT-GCATAAGTACCTTTTGTATAGGTAC
1 TTTTGGCATAAGTA-CTTTAGCATAGGTAC
811306 TTTCTGTAGC
Statistics
Matches: 113, Mismatches: 24, Indels: 13
0.75 0.16 0.09
Matches are distributed among these distances:
28 44 0.39
29 51 0.45
30 18 0.16
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.40
Consensus pattern (30 bp):
TTTTGGCATAAGTACTTTAGCATAGGTACC
Found at i:814145 original size:67 final size:66
Alignment explanation
Indices: 813817--814147 Score: 201
Period size: 67 Copynumber: 5.0 Consensus size: 66
813807 GAAGTCAACC
* *** * * * * *
813817 ATTGTGGTCTCATATGCCACTCCCGTCACTCTCTC-ATTCACAAGTACTTTTAATGGATAAGTCG
1 ATTGTGGTCTCA-GTGCCACTTTTGTCACTCTCTCTAAT-ACAAATATTTTTAATGGAAAAGTTG
*
813881 ACT
64 ATT
* * * * * * *
813884 ATTGTGCTCTTACGCT-CAACTTTTGTCATTCTGCTATAA-ACAAGT-TCTTTTAATGGAGAAGT
1 ATTGTGGTCTCA-G-TGCCACTTTTGTCACTCT-CTCTAATACAAATAT-TTTTAATGGAAAAGT
813946 TGATT
62 TGATT
* * * * * *
813951 GTTGTGGTCTCA-TGCACCACTTTTGTCACTCTTTGTAATACAAGTATTCTTAAT-GAAGAAGTC
1 ATTGTGGTCTCAGTG--CCACTTTTGTCACTCTCTCTAATACAAATATTTTTAATGGAA-AAGTT
*
814014 GACT
63 GATT
* * * * ** * *
814018 ATTGTGGTCACCGTGCCACTTTTGCCACTCTC-CCATATA-AAAGCTTTTTAATGGAGAAGTTAA
1 ATTGTGGTCTCAGTGCCACTTTTGTCACTCTCTCTA-ATACAAATATTTTTAATGGAAAAGTTGA
814081 TT
65 TT
* *
814083 ATTGTGGTTCTGAGTGCCACTTCTGTCACTCTCTCTAATACAAATATTTTTAATGGAAAAGTTGA
1 ATTGTGG-TCTCAGTGCCACTTTTGTCACTCTCTCTAATACAAATATTTTTAATGGAAAAGTTGA
814148 CCATTATGGT
Statistics
Matches: 197, Mismatches: 51, Indels: 32
0.70 0.18 0.11
Matches are distributed among these distances:
64 1 0.01
65 23 0.12
66 49 0.25
67 117 0.59
68 6 0.03
69 1 0.01
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.37
Consensus pattern (66 bp):
ATTGTGGTCTCAGTGCCACTTTTGTCACTCTCTCTAATACAAATATTTTTAATGGAAAAGTTGAT
T
Found at i:814393 original size:67 final size:66
Alignment explanation
Indices: 814268--814393 Score: 148
Period size: 67 Copynumber: 1.9 Consensus size: 66
814258 AAATATTCTT
* ** *
814268 AATAGATAAGTCGACCATTATAGTCTCATGCGTTATTTTTGTCACTCTCCCATCTACAAGTTTTC
1 AATAGAGAAGTCGACCATTATAGTCTCATGCGCCATTTTTGTCACTCTCCCATATACAAGTTTTC
814333 C
66 C
* * *
814334 AATAGAGAAGTCGAACCATTATAGTCTTATGTGCCACTTTTT-TCATTCTCCC-TAATACAA
1 AATAGAGAAGTCG-ACCATTATAGTCTCATGCGCCA-TTTTTGTCACTCTCCCAT-ATACAA
814394 ATGTTCTTAA
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
66 13 0.26
67 32 0.64
68 5 0.10
ACGTcount: A:0.29, C:0.23, G:0.12, T:0.37
Consensus pattern (66 bp):
AATAGAGAAGTCGACCATTATAGTCTCATGCGCCATTTTTGTCACTCTCCCATATACAAGTTTTC
C
Found at i:814723 original size:2 final size:2
Alignment explanation
Indices: 814716--814763 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
814706 TCATTAGCCC
814716 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
814758 TA TA TA
1 TA TA TA
814764 AGTTTTTCTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:816298 original size:20 final size:20
Alignment explanation
Indices: 816255--816303 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
816245 ACCACTGTTT
**
816255 GTATCGATACATAGTACATT
1 GTATCGATACATAGTACAAA
816275 GTATCGATACATAGTGA-AAA
1 GTATCGATACATAGT-ACAAA
816295 GTATCGATA
1 GTATCGATA
816304 TATTGTGCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (20 bp):
GTATCGATACATAGTACAAA
Found at i:822264 original size:16 final size:17
Alignment explanation
Indices: 822245--822278 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
822235 TTTTGAGTTT
822245 TTATGTTT-TTTGATGA
1 TTATGTTTATTTGATGA
*
822261 TTATGTTTATTTGTTGA
1 TTATGTTTATTTGATGA
822278 T
1 T
822279 AACTTTGATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.65
Consensus pattern (17 bp):
TTATGTTTATTTGATGA
Found at i:822616 original size:21 final size:21
Alignment explanation
Indices: 822572--822616 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
822562 GTTTTCAATC
**
822572 TCAAATTTCATCAATTCTTTT
1 TCAAATTTCATCAATTCTACT
822593 TCAAATTTCATCAAATT-TACT
1 TCAAATTTCATC-AATTCTACT
822614 TCA
1 TCA
822617 TTTCCTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (21 bp):
TCAAATTTCATCAATTCTACT
Found at i:824408 original size:23 final size:23
Alignment explanation
Indices: 824353--824397 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
824343 GGGGAGAGAT
*
824353 ATTTTATTAAGGGTGAGAAAAAA
1 ATTTTATTAAGGGAGAGAAAAAA
824376 ATTTTATTAAGGGAGAGAAAAA
1 ATTTTATTAAGGGAGAGAAAAA
824398 TTTTTAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.22, T:0.29
Consensus pattern (23 bp):
ATTTTATTAAGGGAGAGAAAAAA
Found at i:825975 original size:23 final size:21
Alignment explanation
Indices: 825947--826003 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 21
825937 ATTAAAATAT
*
825947 TATTTTTATATTAATATTTATA
1 TATTTTTATATTAA-ATTTAAA
825969 TATTTTTATAATTAAATTTAAA
1 TATTTTTAT-ATTAAATTTAAA
825991 TAATTTTTA-ATTA
1 T-ATTTTTATATTA
826004 TTGAATAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
21 4 0.12
22 16 0.50
23 12 0.38
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTTATATTAAATTTAAA
Found at i:826265 original size:20 final size:17
Alignment explanation
Indices: 826244--826279 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 17
826234 GAATTATATA
826244 AAATAATTATAATTTATTT
1 AAATAATT-T-ATTTATTT
826263 AAATAATTTATTTATTT
1 AAATAATTTATTTATTT
826280 TATTTTAAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.47
18 1 0.06
19 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
AAATAATTTATTTATTT
Found at i:826268 original size:13 final size:13
Alignment explanation
Indices: 826252--826276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
826242 TAAAATAATT
826252 ATAATTTATTTAA
1 ATAATTTATTTAA
826265 ATAATTTATTTA
1 ATAATTTATTTA
826277 TTTTATTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
ATAATTTATTTAA
Done.