Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold460
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 276263
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
File 1 of 2
Found at i:2291 original size:2 final size:2
Alignment explanation
Indices: 2284--2317 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
2274 CCATAAAGAA
2284 AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2318 CATTTATCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
1 2 0.07
2 28 0.93
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:2307 original size:11 final size:11
Alignment explanation
Indices: 2284--2317 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
2274 CCATAAAGAA
2284 ATATATA-TAT
1 ATATATATTAT
2294 ATATATATTAT
1 ATATATATTAT
2305 ATATATATTAT
1 ATATATATTAT
2316 AT
1 AT
2318 CATTTATCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.30
11 16 0.70
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
ATATATATTAT
Found at i:5083 original size:20 final size:20
Alignment explanation
Indices: 5058--5114 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
5048 TTTTACCCAG
*
5058 ATGTATCGATACATTTTTTA
1 ATGTATCGATACATTTTTGA
* * *
5078 ATGTATCGATATATGTATGA
1 ATGTATCGATACATTTTTGA
5098 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
5115 CAATATCTCG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.46
Consensus pattern (20 bp):
ATGTATCGATACATTTTTGA
Found at i:16576 original size:59 final size:59
Alignment explanation
Indices: 16367--16675 Score: 233
Period size: 59 Copynumber: 5.3 Consensus size: 59
16357 TTTAAATGGG
* * * *
16367 CCTAAAATGCATGAAAAATGCTAAGGTGATCTTAGATTATGTAAAATAACCAAAATGGC
1 CCTAAAATGCATGAAAAATGCTAAAGTGATCCTAGATTATGTAAAATAACCTAAATGAC
* * * * * *
16426 CCTAAAATGTAT-AGAAATGTTAAAATGATCCTAGATTATGT-AAA-AA-CTAAGTGGC
1 CCTAAAATGCATGAAAAATGCTAAAGTGATCCTAGATTATGTAAAATAACCTAAATGAC
* * *
16481 CCTAAAATGCAT-AAAAATTAC-AAAGT-AGTCCCTAGATTATGAAAAATAACCTATATGAC
1 CCTAAAATGCATGAAAAA-TGCTAAAGTGA-T-CCTAGATTATGTAAAATAACCTAAATGAC
* * * *
16540 CCAAAAATGCATGAAAAATGCTAAGGTGAAT-TTAGATTATGTAAAATAATCTAAATGGA-
1 CCTAAAATGCATGAAAAATGCTAAAGTG-ATCCTAGATTATGTAAAATAACCTAAAT-GAC
* * * * ** * * * *
16599 CTTAAAATGCATGAAAATTAC-AAAATTTTCTTTAGATTATGGAAAAATAACTTAAATAAC
1 CCTAAAATGCATGAAAAATGCTAAAGTGATC-CTAGATTAT-GTAAAATAACCTAAATGAC
*
16659 CCTAAAATGCATTAAAA
1 CCTAAAATGCATGAAAA
16676 TTGCATTTTG
Statistics
Matches: 197, Mismatches: 38, Indels: 29
0.75 0.14 0.11
Matches are distributed among these distances:
54 1 0.01
55 27 0.14
56 14 0.07
57 7 0.04
58 29 0.15
59 78 0.40
60 39 0.20
61 1 0.01
62 1 0.01
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.28
Consensus pattern (59 bp):
CCTAAAATGCATGAAAAATGCTAAAGTGATCCTAGATTATGTAAAATAACCTAAATGAC
Found at i:16635 original size:118 final size:116
Alignment explanation
Indices: 16457--16675 Score: 278
Period size: 118 Copynumber: 1.9 Consensus size: 116
16447 AAAATGATCC
* * *
16457 TAGATTATGTAAAAACTAAGTGGCCCTAAAATGCATAAAAATTACAAAGTAGTCCCTAGATTAT-
1 TAGATTATGTAAAAACTAAATGGACCTAAAATGCATAAAAATTACAAAATAGTCCCTAGATTATG
* *
16521 GAAAAATAACCTATATGACCCAAAAATGCATGAAAAATGCTAAGGTGAATT
66 GAAAAATAACCTAAATAACCCAAAAATGCATGAAAAATGCTAAGGTGAATT
* * ** **
16572 TAGATTATGTAAAATAATCTAAATGGACTTAAAATGCATGAAAATTACAAAATTTTCTTTAGATT
1 TAGATTATGT-AAA-AA-CTAAATGGACCTAAAATGCATAAAAATTACAAAATAGTCCCTAGATT
* * *
16637 ATGGAAAAATAACTTAAATAACCCTAAAATGCATTAAAA
63 ATGGAAAAATAACCTAAATAACCCAAAAATGCATGAAAA
16676 TTGCATTTTG
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
115 10 0.12
116 3 0.03
117 2 0.02
118 40 0.47
119 31 0.36
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (116 bp):
TAGATTATGTAAAAACTAAATGGACCTAAAATGCATAAAAATTACAAAATAGTCCCTAGATTATG
GAAAAATAACCTAAATAACCCAAAAATGCATGAAAAATGCTAAGGTGAATT
Found at i:16676 original size:60 final size:60
Alignment explanation
Indices: 16601--16741 Score: 155
Period size: 59 Copynumber: 2.4 Consensus size: 60
16591 TAAATGGACT
* * * *
16601 TAAAATGCATGAAAATTACAAAATTT-TCTTTAGATTATGGAAAAATAACT-TAAATAACCC
1 TAAAATGCATGAAAATTACAAAATTTGTCTTTAGAGTATAG-AAAACAA-TGTAAATAACCA
* * * *
16661 TAAAATGCATTAAAATTGC--ATTTTGGTCTTTAGAGTATAGAAAACAATGTAAATGACCA
1 TAAAATGCATGAAAATTACAAAATTT-GTCTTTAGAGTATAGAAAACAATGTAAATAACCA
16720 TAAAATGCATGAAAATTACAAA
1 TAAAATGCATGAAAATTACAAA
16742 GCGGTCTTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 9
0.78 0.12 0.11
Matches are distributed among these distances:
58 5 0.08
59 31 0.47
60 29 0.44
61 1 0.02
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.30
Consensus pattern (60 bp):
TAAAATGCATGAAAATTACAAAATTTGTCTTTAGAGTATAGAAAACAATGTAAATAACCA
Found at i:16748 original size:59 final size:57
Alignment explanation
Indices: 16582--16802 Score: 154
Period size: 59 Copynumber: 3.7 Consensus size: 57
16572 TAGATTATGT
* * ** * *
16582 AAAATAATCTAAATGGACTTAAAATGCATGAAAATTACAAAATTTTCTTTAGATTATGG
1 AAAACAAT-TAAAT-GACCTAAAATGCATGAAAATTACAAAATGGTCTTTAGAATATAG
* * * * *** *
16641 AAAAATAACTTAAATAACCCTAAAATGCATTAAAATTGCATTTTGGTCTTTAGAGTATAG
1 -AAAACAA-TTAAATGA-CCTAAAATGCATGAAAATTACAAAATGGTCTTTAGAATATAG
** * *
16701 AAAACAATGTAAATGACCATAAAATGCATGAAAATTACAAAGCGGTCTTTTGAATATTG
1 AAAACAAT-TAAATGACC-TAAAATGCATGAAAATTACAAAATGGTCTTTAGAATATAG
** ** *
16760 AAAACTACCTAAATGAACCTAAAATATATGAAAATTGCAAAAT
1 AAAAC-AATTAAATG-ACCTAAAATGCATGAAAATTACAAAAT
16803 AGTCCCTAGA
Statistics
Matches: 126, Mismatches: 29, Indels: 13
0.75 0.17 0.08
Matches are distributed among these distances:
58 3 0.02
59 74 0.59
60 48 0.38
61 1 0.01
ACGTcount: A:0.47, C:0.11, G:0.12, T:0.30
Consensus pattern (57 bp):
AAAACAATTAAATGACCTAAAATGCATGAAAATTACAAAATGGTCTTTAGAATATAG
Found at i:16750 original size:119 final size:118
Alignment explanation
Indices: 16483--16798 Score: 293
Period size: 119 Copynumber: 2.7 Consensus size: 118
16473 TAAGTGGCCC
* ** * * *
16483 TAAAATGCATAAAAATTACAAAGTAGTCCCTAGATTATGAAAAATAACCTATATGACCCAAAAAT
1 TAAAATGCATGAAAATTACAAAGTAGTCTTTAGATTATGAAAAATAACCTAAATAACCCTAAAAT
* * * *
16548 GCATGAAAAATGC-TAAGGTGAATTTAGATTATGTAAAATAATCTAAATGGACT
66 GCATGAAAATTGCATAAGGT-AATTTAGAGTATGTAAAACAATCTAAATGGACA
* ** *
16601 TAAAATGCATGAAAATTACAAAATTTTCTTTAGATTATGGAAAAATAACTTAAATAACCCTAAAA
1 TAAAATGCATGAAAATTACAAAGTAGTCTTTAGATTAT-GAAAAATAACCTAAATAACCCTAAAA
* ** * *
16666 TGCATTAAAATTGCATTTTGGT-CTTTAGAGTATAG-AAAACAATGTAAAT-GACCA
65 TGCATGAAAATTGCA-TAAGGTAATTTAGAGTAT-GTAAAACAATCTAAATGGA-CA
** * * *
16720 TAAAATGCATGAAAATTACAAAGCGGTCTTTTGAATATTGAAAACT-ACCTAAATGAA-CCTAAA
1 TAAAATGCATGAAAATTACAAAGTAGTCTTTAGATTA-TGAAAAATAACCTAAAT-AACCCTAAA
**
16783 ATATATGAAAATTGCA
64 ATGCATGAAAATTGCA
16799 AAATAGTCCC
Statistics
Matches: 161, Mismatches: 30, Indels: 14
0.79 0.15 0.07
Matches are distributed among these distances:
118 60 0.37
119 95 0.59
120 2 0.01
121 4 0.02
ACGTcount: A:0.47, C:0.12, G:0.13, T:0.29
Consensus pattern (118 bp):
TAAAATGCATGAAAATTACAAAGTAGTCTTTAGATTATGAAAAATAACCTAAATAACCCTAAAAT
GCATGAAAATTGCATAAGGTAATTTAGAGTATGTAAAACAATCTAAATGGACA
Found at i:17741 original size:13 final size:13
Alignment explanation
Indices: 17723--17748 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
17713 CAATTTTTTG
17723 TGTATCGATACAT
1 TGTATCGATACAT
17736 TGTATCGATACAT
1 TGTATCGATACAT
17749 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:19873 original size:21 final size:20
Alignment explanation
Indices: 19844--19886 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
19834 GACTAGTGTG
*
19844 GGGACTGCCCGGTTGTGACCT
1 GGGACTG-CCGGTCGTGACCT
*
19865 GGGAGTGCCGGTCGTGACCT
1 GGGACTGCCGGTCGTGACCT
19885 GG
1 GG
19887 TGGTGCTGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.09, C:0.26, G:0.44, T:0.21
Consensus pattern (20 bp):
GGGACTGCCGGTCGTGACCT
Found at i:20333 original size:13 final size:13
Alignment explanation
Indices: 20315--20352 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
20305 ATAATCCCCC
20315 TGTATCGATACAG
1 TGTATCGATACAG
*
20328 TGTATCGATACAT
1 TGTATCGATACAG
20341 TGTATCGATACA
1 TGTATCGATACA
20353 AAGAAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:24911 original size:12 final size:12
Alignment explanation
Indices: 24871--24903 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
24861 CGAGTCACCA
24871 TCTTCATCAACC
1 TCTTCATCAACC
24883 TCTTCATCAACC
1 TCTTCATCAACC
24895 TCTTCATCA
1 TCTTCATCA
24904 TCTTCTTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.39, G:0.00, T:0.36
Consensus pattern (12 bp):
TCTTCATCAACC
Found at i:26546 original size:13 final size:13
Alignment explanation
Indices: 26528--26553 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26518 CAATTTTTTG
26528 TGTATCGATACAT
1 TGTATCGATACAT
26541 TGTATCGATACAT
1 TGTATCGATACAT
26554 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:26565 original size:32 final size:33
Alignment explanation
Indices: 26508--26571 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
26498 TACAAGCCAA
**
26508 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
26541 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
26572 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:28097 original size:18 final size:20
Alignment explanation
Indices: 28060--28099 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
28050 TTTCTTGAAG
28060 TATCGATACATTTGATGGGT
1 TATCGATACATTTGATGGGT
*
28080 TATCGATATA-TT-ATGGGT
1 TATCGATACATTTGATGGGT
28098 TA
1 TA
28100 ATATATCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
19 2 0.11
20 9 0.47
ACGTcount: A:0.28, C:0.07, G:0.23, T:0.42
Consensus pattern (20 bp):
TATCGATACATTTGATGGGT
Found at i:28197 original size:21 final size:21
Alignment explanation
Indices: 28173--28223 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
28163 AATGAATGAA
28173 GTATCGATACATCATGCAAAT
1 GTATCGATACATCATGCAAAT
28194 GTATCGATACATCATGCAAAT
1 GTATCGATACATCATGCAAAT
*
28215 ATATCGATA
1 GTATCGATA
28224 TTTGCTTCTC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (21 bp):
GTATCGATACATCATGCAAAT
Found at i:29325 original size:34 final size:34
Alignment explanation
Indices: 29282--29349 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
29272 ATGATCGAAG
29282 TATGTTTCGTGATTATCTTCGATTATTGATGCAT
1 TATGTTTCGTGATTATCTTCGATTATTGATGCAT
29316 TATGTTTCGTGATTATCTTCGATTATTGATGCAT
1 TATGTTTCGTGATTATCTTCGATTATTGATGCAT
29350 AATCATGATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.21, C:0.12, G:0.18, T:0.50
Consensus pattern (34 bp):
TATGTTTCGTGATTATCTTCGATTATTGATGCAT
Found at i:29862 original size:79 final size:78
Alignment explanation
Indices: 29725--30008 Score: 295
Period size: 79 Copynumber: 3.6 Consensus size: 78
29715 TAGAAACAAA
* * * *
29725 AACAAGGTTAGAGTATCCCCGAGATGAAAATTTCAATATTTTGAAAATAAAAATGGGGTCGGAGT
1 AACAGGGTTAGAGTATCCTCGAGATGAAAATTT-AATATTTTGGAAATAAAAATGGGGTTGGAGT
29790 ATCTCCTCGAAAAT
65 ATCTCCTCGAAAAT
* * *
29804 AACAGGGTTAGAGTATCCTCGTGATGAAGAATTTAATATTTTGGAAATATAAACGGGGTTGGAGT
1 AACAGGGTTAGAGTATCCTCGAGATGAA-AATTTAATATTTTGGAAATAAAAATGGGGTTGGAGT
* *
29869 ATC-CATTCGAAATT
65 ATCTC-CTCGAAAAT
* ** * * *
29883 GATGGGGTTAGACTATCC-CTGAGATGAAAACTTTAATATTTTTGAAATAAAAATGGGGTTAGAG
1 AACAGGGTTAGAGTATCCTC-GAGATGAAAA-TTTAATATTTTGGAAATAAAAATGGGGTTGGAG
* * *
29947 TATGTCCTTGGAAAT
64 TATCTCCTCGAAAAT
* * *
29962 AACGGGGTTGGAGTATCCAT-GAGATGAAAAATTTAATATTTTTGAAA
1 AACAGGGTTAGAGTATCC-TCGAGATG-AAAATTTAATATTTTGGAAA
30009 GGAAATATTT
Statistics
Matches: 170, Mismatches: 27, Indels: 16
0.80 0.13 0.08
Matches are distributed among these distances:
78 4 0.02
79 156 0.92
80 10 0.06
ACGTcount: A:0.36, C:0.10, G:0.23, T:0.31
Consensus pattern (78 bp):
AACAGGGTTAGAGTATCCTCGAGATGAAAATTTAATATTTTGGAAATAAAAATGGGGTTGGAGTA
TCTCCTCGAAAAT
Found at i:31275 original size:35 final size:35
Alignment explanation
Indices: 31225--31296 Score: 126
Period size: 35 Copynumber: 2.1 Consensus size: 35
31215 GAAAGAAAAG
*
31225 AAAGAAAAAATGGAAAAAAAGTGCATGGTGATGGT
1 AAAGAAAAAAAGGAAAAAAAGTGCATGGTGATGGT
*
31260 AAAGAAAAAAAGGAAAAAAAGTGCGTGGTGATGGT
1 AAAGAAAAAAAGGAAAAAAAGTGCATGGTGATGGT
31295 AA
1 AA
31297 GATATCTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.53, C:0.03, G:0.29, T:0.15
Consensus pattern (35 bp):
AAAGAAAAAAAGGAAAAAAAGTGCATGGTGATGGT
Found at i:32204 original size:13 final size:13
Alignment explanation
Indices: 32186--32211 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32176 CAATTTTTTG
32186 TGTATCGATACAT
1 TGTATCGATACAT
32199 TGTATCGATACAT
1 TGTATCGATACAT
32212 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:32223 original size:32 final size:33
Alignment explanation
Indices: 32166--32229 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
32156 TACAAGCCAA
**
32166 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
32199 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
32230 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:32286 original size:21 final size:21
Alignment explanation
Indices: 32260--32316 Score: 114
Period size: 21 Copynumber: 2.7 Consensus size: 21
32250 ATCCCAATGA
32260 CATGTATCGATACATCTTTTT
1 CATGTATCGATACATCTTTTT
32281 CATGTATCGATACATCTTTTT
1 CATGTATCGATACATCTTTTT
32302 CATGTATCGATACAT
1 CATGTATCGATACAT
32317 TGCAACATGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.26, C:0.19, G:0.11, T:0.44
Consensus pattern (21 bp):
CATGTATCGATACATCTTTTT
Found at i:32989 original size:21 final size:21
Alignment explanation
Indices: 32948--32991 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
32938 CTCCCCTTTA
* *
32948 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
32969 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
32990 TC
1 TC
32992 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:34814 original size:13 final size:13
Alignment explanation
Indices: 34796--34821 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
34786 ATAATCACCC
34796 TGTATCGATACAA
1 TGTATCGATACAA
34809 TGTATCGATACAA
1 TGTATCGATACAA
34822 GGAAAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:34878 original size:20 final size:20
Alignment explanation
Indices: 34807--34886 Score: 72
Period size: 20 Copynumber: 3.8 Consensus size: 20
34797 GTATCGATAC
34807 AATGTATCGATACA-AGGAAA
1 AATGTATCGATACATA-GAAA
*
34827 AATGTATCGATACATTGAATTTCCA
1 AATGTATCGATACATAGAA-----A
*
34852 GATGTATCGATACATAGAAA
1 AATGTATCGATACATAGAAA
*
34872 CATGTATCGATACAT
1 AATGTATCGATACAT
34887 TTTGGACATT
Statistics
Matches: 50, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATAGAAA
Found at i:36919 original size:15 final size:15
Alignment explanation
Indices: 36899--36929 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36889 ATTTCGTTTG
*
36899 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
36914 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
36929 G
1 G
36930 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:38762 original size:21 final size:21
Alignment explanation
Indices: 38733--38777 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
38723 AAGTTTTCAT
*
38733 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
38753 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
38775 TTT
1 TTT
38778 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:41001 original size:13 final size:13
Alignment explanation
Indices: 40983--41008 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40973 CAATTTTTTG
40983 TGTATCGATACAT
1 TGTATCGATACAT
40996 TGTATCGATACAT
1 TGTATCGATACAT
41009 ACTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:41020 original size:32 final size:33
Alignment explanation
Indices: 40963--41026 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
40953 TACAAGCCAA
**
40963 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTTGTGTATCGATACAT
40996 TGTATCGATAC-ATACTTTGTGTATCGATACA
1 TGTATCGATACAATACTTTGTGTATCGATACA
41027 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.62
33 11 0.38
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (33 bp):
TGTATCGATACAATACTTTGTGTATCGATACAT
Found at i:42549 original size:20 final size:21
Alignment explanation
Indices: 42524--42575 Score: 79
Period size: 20 Copynumber: 2.5 Consensus size: 21
42514 TACATTTGGC
42524 ATGTATCGATACATTCACT-T
1 ATGTATCGATACATTCACTAT
*
42544 ATGTATCGATACATTTACTAT
1 ATGTATCGATACATTCACTAT
*
42565 TTGTATCGATA
1 ATGTATCGATA
42576 TAAATTGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 18 0.62
21 11 0.38
ACGTcount: A:0.31, C:0.15, G:0.12, T:0.42
Consensus pattern (21 bp):
ATGTATCGATACATTCACTAT
Found at i:43164 original size:15 final size:15
Alignment explanation
Indices: 43144--43187 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
43134 CTTGATTCGG
43144 AAAAAATTTAACCGA
1 AAAAAATTTAACCGA
* **
43159 AAAAAATTTCACTAA
1 AAAAAATTTAACCGA
43174 AAAAAATTTAACCG
1 AAAAAATTTAACCG
43188 GTATAATACT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.59, C:0.14, G:0.05, T:0.23
Consensus pattern (15 bp):
AAAAAATTTAACCGA
Found at i:47063 original size:79 final size:79
Alignment explanation
Indices: 46930--47416 Score: 416
Period size: 79 Copynumber: 6.2 Consensus size: 79
46920 TCATTGATGT
* * * * * * * *
46930 TTTTATTTCTAAAATACCGATTTTCCACCATC-AGGGATACTCCAAACCCGTTATTTTTGAGAGG
1 TTTTATTTCCAAAACATCAATTTTCCACAATCGA-GGATACTCCAACCCCGTTATTTTCGAGGGG
*
46994 ATACTCTAACCCCGA
65 ATACTCCAACCCCGA
* * * *
47009 TTTTAGTTT-CAAAACATCAATTTTCCACAACCGAGGATGCTCCAACCCCATTA-TTTCTAAGGG
1 TTTTA-TTTCCAAAACATCAATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTC-GAGGG
*
47072 GATACTCCAACCCTGA
64 GATACTCCAACCCCGA
* * * *
47088 TTTTATTTCCAAAACATCGATTTTCCACAATCAAGGATACTCCAACTCTGTTATTTTCGAGGGGA
1 TTTTATTTCCAAAACATCAATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGA
* * *
47153 TACTCCAGCCTCGG
66 TACTCCAACCCCGA
* * **
47167 TTTTATTTCCAAAACA-CTAATTTTCCATAATCGGGGATACTCCAACCTTGTTATTTTCGAGGGG
1 TTTTATTTCCAAAACATC-AATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGG
47231 ATACTCCAACCCC-A
65 ATACTCCAACCCCGA
* * * * * * *
47245 GTTTTATTTCCAAAATATCCATTTTTCATAATC-AGGGATACTCCAACCCCATTATTTCCGAGAG
1 -TTTTATTTCCAAAACATCAATTTTCCACAATCGA-GGATACTCCAACCCCGTTATTTTCGAGGG
** *
47309 GATACTCCAACCTAGG
64 GATACTCCAACCCCGA
** * * * * * * *
47325 TTTTATTTTTAAAAAACCGATCTTT-CACCAT-GGGGATACTCCCACCTCGTTATTTTCGAGGGG
1 TTTTATTTCCAAAACATCAAT-TTTCCACAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGG
**
47388 ATACTCTGACCCC-A
65 ATACTCCAACCCCGA
*
47402 TTTTTATCTCCAAAA
1 -TTTTATTTCCAAAA
47417 TATTAAAATT
Statistics
Matches: 327, Mismatches: 68, Indels: 27
0.77 0.16 0.06
Matches are distributed among these distances:
78 52 0.16
79 263 0.80
80 12 0.04
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (79 bp):
TTTTATTTCCAAAACATCAATTTTCCACAATCGAGGATACTCCAACCCCGTTATTTTCGAGGGGA
TACTCCAACCCCGA
Found at i:47417 original size:157 final size:158
Alignment explanation
Indices: 46930--47419 Score: 488
Period size: 158 Copynumber: 3.1 Consensus size: 158
46920 TCATTGATGT
* * * * * **
46930 TTTTATTTCTAAAATA-CCGATTTTCCACCATCAGGGATACTCCAAACCCGTTATTTTTGAGAGG
1 TTTTATTTCCAAAATATCC-ATTTTCCACAATCAAGGATACTCCAACCCCATTATTTCCGAGAGG
* ** * * * * * * *
46994 ATACTCTAACCCCGATTTTAGTTT-CAAAACATCAATTTTCCACAACCGAGGATGCTCCAACCCC
65 ATACTCCAACCTAGGTTTTA-TTTCCAAAAAACCAATTTTCCACAATCGGGGATACTCCAACCTC
* * *
47058 ATTA-TTTCTAAGGGGATACTCCAA-CCCTG
129 GTTATTTTC-GAGGGGATACTCCAACCCCAG
* * * ** * *
47087 ATTTTATTTCCAAAACATCGATTTTCCACAATCAAGGATACTCCAACTCTGTTATTTTCGAGGGG
1 -TTTTATTTCCAAAATATCCATTTTCCACAATCAAGGATACTCCAACCCCATTATTTCCGAGAGG
* * * * * *
47152 ATACTCCAGCCTCGGTTTTATTTCCAAAACACTAATTTTCCATAATCGGGGATACTCCAACCTTG
65 ATACTCCAACCTAGGTTTTATTTCCAAAAAACCAATTTTCCACAATCGGGGATACTCCAACCTCG
47217 TTATTTTCGAGGGGATACTCCAACCCCAG
130 TTATTTTCGAGGGGATACTCCAACCCCAG
* * *
47246 TTTTATTTCCAAAATATCCATTTTTCATAATCAGGGATACTCCAACCCCATTATTTCCGAGAGGA
1 TTTTATTTCCAAAATATCCATTTTCCACAATCAAGGATACTCCAACCCCATTATTTCCGAGAGGA
** * * *
47311 TACTCCAACCTAGGTTTTATTTTTAAAAAACCGATCTTT-CACCAT-GGGGATACTCCCACCTCG
66 TACTCCAACCTAGGTTTTATTTCCAAAAAACCAAT-TTTCCACAATCGGGGATACTCCAACCTCG
** *
47374 TTATTTTCGAGGGGATACTCTGACCCCAT
130 TTATTTTCGAGGGGATACTCCAACCCCAG
*
47403 TTTTATCTCCAAAATAT
1 TTTTATTTCCAAAATAT
47420 TAAAATTTTC
Statistics
Matches: 277, Mismatches: 50, Indels: 11
0.82 0.15 0.03
Matches are distributed among these distances:
157 61 0.22
158 204 0.74
159 12 0.04
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (158 bp):
TTTTATTTCCAAAATATCCATTTTCCACAATCAAGGATACTCCAACCCCATTATTTCCGAGAGGA
TACTCCAACCTAGGTTTTATTTCCAAAAAACCAATTTTCCACAATCGGGGATACTCCAACCTCGT
TATTTTCGAGGGGATACTCCAACCCCAG
Found at i:48426 original size:20 final size:20
Alignment explanation
Indices: 48401--48454 Score: 81
Period size: 20 Copynumber: 2.7 Consensus size: 20
48391 GTTAGGCATA
* *
48401 ATGTATCGATACATTTTACT
1 ATGTATCGATACAATGTACT
*
48421 ATGTATCGATACAATGTCCT
1 ATGTATCGATACAATGTACT
48441 ATGTATCGATACAA
1 ATGTATCGATACAA
48455 ACAGTGATAG
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.37
Consensus pattern (20 bp):
ATGTATCGATACAATGTACT
Found at i:49705 original size:13 final size:13
Alignment explanation
Indices: 49687--49711 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
49677 TACATGGCAC
49687 AATGTATCGATAT
1 AATGTATCGATAT
49700 AATGTATCGATA
1 AATGTATCGATA
49712 CATGAAGAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.16, T:0.36
Consensus pattern (13 bp):
AATGTATCGATAT
Found at i:49726 original size:33 final size:33
Alignment explanation
Indices: 49669--49731 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
49659 TACCATTATT
*
49669 TGTATCGATACATGGCACAATGTATCGATATAA
1 TGTATCGATACATGGAACAATGTATCGATATAA
*
49702 TGTATCGATACAT-GAAGAATTGTATCGATA
1 TGTATCGATACATGGAACAA-TGTATCGATA
49732 CATTGTCCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
32 4 0.15
33 23 0.85
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.32
Consensus pattern (33 bp):
TGTATCGATACATGGAACAATGTATCGATATAA
Found at i:57446 original size:33 final size:33
Alignment explanation
Indices: 57391--57459 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
57381 AGTTAATTAC
57391 TTCACTTTCCTAACGCAAGGATGAGCACTTTAG
1 TTCACTTTCCTAACGCAAGGATGAGCACTTTAG
* *
57424 TTCACTTTCGC-AGCGCATGGATGAGCACTTTAG
1 TTCACTTTC-CTAACGCAAGGATGAGCACTTTAG
57457 TTC
1 TTC
57460 TCTTAACCGA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
33 32 0.97
34 1 0.03
ACGTcount: A:0.23, C:0.25, G:0.20, T:0.32
Consensus pattern (33 bp):
TTCACTTTCCTAACGCAAGGATGAGCACTTTAG
Found at i:58433 original size:19 final size:21
Alignment explanation
Indices: 58390--58442 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 21
58380 CACTTTTAGG
*
58390 TGTATCGATACAT-TATGCTT
1 TGTATCGATACATGTATGCAT
58410 TGTATCGATACATGT-T-CAT
1 TGTATCGATACATGTATGCAT
*
58429 TGTATCAATACATG
1 TGTATCGATACATG
58443 AACAAATGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
19 15 0.50
20 14 0.47
21 1 0.03
ACGTcount: A:0.28, C:0.15, G:0.15, T:0.42
Consensus pattern (21 bp):
TGTATCGATACATGTATGCAT
Found at i:58534 original size:33 final size:32
Alignment explanation
Indices: 58492--58556 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
58482 TACCACTATT
58492 TGTATCGATACATG-GCACATTGTATCGATACAA
1 TGTATCGATACATGAG-A-ATTGTATCGATACAA
*
58525 TGTATCGATATATGAAGAATTGTATCGATACA
1 TGTATCGATACATG-AGAATTGTATCGATACA
58557 TTATCCCAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATGAGAATTGTATCGATACAA
Found at i:61248 original size:51 final size:51
Alignment explanation
Indices: 61193--61291 Score: 153
Period size: 51 Copynumber: 1.9 Consensus size: 51
61183 AAGTATCCCT
* *
61193 GATTGTTAAAAATTGATGTTTTGGAAATAAAATAGGAGTTAGAGTATCATC
1 GATTGTGAAAAATTGATGTTTTAGAAATAAAATAGGAGTTAGAGTATCATC
* * *
61244 GATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATC
1 GATTGTGAAAAATTGATGTTTTAGAAATAAAATAGGAGTTAGAGTATC
61292 CCCTTGGAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 43 1.00
ACGTcount: A:0.37, C:0.04, G:0.24, T:0.34
Consensus pattern (51 bp):
GATTGTGAAAAATTGATGTTTTAGAAATAAAATAGGAGTTAGAGTATCATC
Found at i:61443 original size:79 final size:79
Alignment explanation
Indices: 61360--61643 Score: 351
Period size: 79 Copynumber: 3.6 Consensus size: 79
61350 TAAAACCAAA
* * * *
61360 GTTGGACTATCCCCGATTGTAAAAAATTAATGTTTTAGAAATAAAACTGGGGTTAGAGTATTCCC
1 GTTGGAGTATCCCCGATTGTAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTA-TCCC
61425 CT-AAAAATAATGGG
65 CTCAAAAATAATGGG
* * * * *
61439 GTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAAAAATAAAACCGGGGTTGGAGTATCTCC
1 GTTGGAGTATCCCCGATTGTAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
61504 TCAAAAATAATGGG
66 TCAAAAATAATGGG
* * * *
61518 GTTAGAGTATCCCCGATGGTGGAAAAA-TGATGTTTT-GAAAATAAAACCGAGGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTGT-AAAAAATTGATGTTTTAG-AAATAAAACCGGGGTTGGAGTATCC
* *
61581 CCTCGAAAATAATGGC
64 CCTCAAAAATAATGGG
*
61597 GTTGGAGTATCCCCGATTGTAAAAAAATTGGTGTTTT-GAAAATAAAA
1 GTTGGAGTATCCCCGATTGT-AAAAAATTGATGTTTTAG-AAATAAAA
61644 ACATGAATGA
Statistics
Matches: 178, Mismatches: 23, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
78 5 0.03
79 149 0.84
80 24 0.13
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.29
Consensus pattern (79 bp):
GTTGGAGTATCCCCGATTGTAAAAAATTGATGTTTTAGAAATAAAACCGGGGTTGGAGTATCCCC
TCAAAAATAATGGG
Found at i:61494 original size:130 final size:130
Alignment explanation
Indices: 61169--61500 Score: 389
Period size: 130 Copynumber: 2.6 Consensus size: 130
61159 ATTCCCGATG
* * * * * ** *
61169 AAATAACGGGATTGAAGTATCCCTGATTGTTAAAAATTGATGTTTTGGAAATAAAATAGGAGTTA
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGAGTTG
* * * * **
61234 GAGTATCATCGATTGTGAAAAATTGATGTTTTAGAAATAAAATCGGGGTTGGAGTATCCCCTTGG
66 GAGTATCACCGATTGTAAAAAATTAATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTTAA
* * * * **
61299 AAATAACAGGGTTAGAGTATCCCCGATGGTGAAAAATCGATGTTTTGAAAATAAAACCAAAGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGAGTTG
* *
61364 GACTATCCCCGATTGTAAAAAATTAATGTTTTAGAAATAAAA-CTGGGGTTAGAGTATTCCCC-T
66 GAGTATCACCGATTGTAAAAAATTAATGTTTTAGAAATAAAATC-GGGGTTAGAGTA-TCCCCTT
61427 AA
129 AA
* * * * *
61429 AAATAATGGGGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTAAAAATAAAACCGGGGTTG
1 AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGAGTTG
61494 GAGTATC
66 GAGTATC
61501 TCCTCAAAAA
Statistics
Matches: 166, Mismatches: 34, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
129 1 0.01
130 160 0.96
131 5 0.03
ACGTcount: A:0.37, C:0.11, G:0.23, T:0.30
Consensus pattern (130 bp):
AAATAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTGATGTTTTGAAAATAAAACCGGAGTTG
GAGTATCACCGATTGTAAAAAATTAATGTTTTAGAAATAAAATCGGGGTTAGAGTATCCCCTTAA
Found at i:64067 original size:13 final size:13
Alignment explanation
Indices: 64020--64048 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
64010 GTAAACTCAG
64020 AATGTATCGATAC
1 AATGTATCGATAC
64033 AATGTATCGATAC
1 AATGTATCGATAC
64046 AAT
1 AAT
64049 TAACAATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:64760 original size:42 final size:41
Alignment explanation
Indices: 64598--64941 Score: 188
Period size: 41 Copynumber: 8.2 Consensus size: 41
64588 GTATCCTACC
** * * *
64598 CTTTGAGGATTAAGG-AAAAGGAGAATAAAATGGGTCCTACT
1 CTTTGAGGACAAAGGAAAAAGGA-AATAAAGTGCGTCCTGCT
* * * * *
64639 -TATTGGGGACTAAGGAAAAAAGGAAATAAAATGCATCTTGC-
1 CT-TTGAGGACAAAGG-AAAAAGGAAATAAAGTGCGTCCTGCT
* * **
64680 CTTTTGAAGACAAAGAAAAAAGGAAATTAAA-TATGTCCTGCT
1 C-TTTGAGGACAAAGGAAAAAGGAAA-TAAAGTGCGTCCTGCT
* *
64722 TTTTGAGGACAAAGGAAAAAGGAGAATAAAGTGCGTCCTACT
1 CTTTGAGGACAAAGGAAAAAGGA-AATAAAGTGCGTCCTGCT
* * * *
64764 GTTTGAGAACTATAAGGGAAAAGAAGGAAATGAAGTGCGTCATGCT
1 CTTTGAGGAC-A-AA-GG-AAA-AAGGAAATAAAGTGCGTCCTGCT
* * * *
64810 CTTTGAGGACAAAGGAAAAAAG-AA-AAAGAGCATCCCGCT
1 CTTTGAGGACAAAGGAAAAAGGAAATAAAGTGCGTCCTGCT
* * * *
64849 CTTTAAGGACAAAAGGGAAAAGAAGGAAA-AGAAATGTGTCCTACT
1 CTTTGAGGAC-AAA-GG-AAA-AAGGAAATA-AAGTGCGTCCTGCT
* *
64894 CTTTGAGGGCAAAGGAGAAAAGG--A-AAAG-GCATCCTGCT
1 CTTTGAGGACAAAGGA-AAAAGGAAATAAAGTGCGTCCTGCT
64932 CTTTGAGGAC
1 CTTTGAGGAC
64942 TAAAAAGTGC
Statistics
Matches: 234, Mismatches: 48, Indels: 45
0.72 0.15 0.14
Matches are distributed among these distances:
38 16 0.07
39 21 0.09
40 8 0.03
41 56 0.24
42 55 0.24
43 18 0.08
44 10 0.04
45 19 0.08
46 26 0.11
47 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.26, T:0.21
Consensus pattern (41 bp):
CTTTGAGGACAAAGGAAAAAGGAAATAAAGTGCGTCCTGCT
Found at i:64896 original size:84 final size:84
Alignment explanation
Indices: 64694--64946 Score: 285
Period size: 84 Copynumber: 3.0 Consensus size: 84
64684 TGAAGACAAA
* * * *
64694 GAAAA-AAGGAAATTAAATATGTCCTGCTTTTTGAGGACAAAGGAAAAAGGAGAATAAAGTGCGT
1 GAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAAAAA--AGAA-AAAG-GCAT
* * * *
64758 CCTACTGTTTGAGAACTATAAGG
62 CCTGCTCTTTGAGGACTAAAAGG
* * * *
64781 GAAAAGAAGGAAATGAAGTGCGTCATGCTCTTTGAGGACAAAGGAAAAAAGAAAAAGAGCATCCC
1 GAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAG-GCATCCT
*
64846 GCTCTTTAAGGAC-AAAAGG
65 GCTCTTTGAGGACTAAAAGG
* * * * *
64865 GAAAAGAAGGAAAAGAAATGTGTCCTACTCTTTGAGGGCAAAGGAGAAAAGGAAAAGGCATCCTG
1 GAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAGGCATCCTG
64930 CTCTTTGAGGACTAAAA
66 CTCTTTGAGGACTAAAA
64947 AGTGCCACCA
Statistics
Matches: 140, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
83 18 0.13
84 58 0.41
85 18 0.13
86 4 0.03
87 5 0.04
88 37 0.26
ACGTcount: A:0.42, C:0.13, G:0.26, T:0.19
Consensus pattern (84 bp):
GAAAAGAAGGAAATGAAATGTGTCCTGCTCTTTGAGGACAAAGGAAAAAAGAAAAAGGCATCCTG
CTCTTTGAGGACTAAAAGG
Found at i:65014 original size:61 final size:61
Alignment explanation
Indices: 64911--65575 Score: 755
Period size: 61 Copynumber: 11.1 Consensus size: 61
64901 GGCAAAGGAG
* * *
64911 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTA-AAAAGTGCCACCAACTCGCGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGA-TGCCACCAACTTGTGTGGGCTTT
* * *
64972 GAAAA-GAAAAGACATCCTGCTCTTTGAGGATTGGAAGATGCCACCAACTTGTGTGGGCTTT
1 -AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTT
* *
65033 AAAAGGAGAAA-GCATCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCCTT
1 AAAAGGA-AAAGGCATCCTGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTT
* * *
65094 AAAAGGAAAAGGCATCCTACTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTATGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGA-TGCCACCAACTTGTGTGGGCTTT
* *
65156 AAAAGGAAAAGGCATCCTGTTCTTTGAGGACTAG-AGGTGCCACCAACTTGTGTGGGCTTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGC-TTT
* * *
65217 AAAAGGAAATGGCATCCTGCTCCTTGAGGACTGGAA-AGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGA-TGCCACCAACTTGTGTGGGCTTT
* *
65278 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACT-GAAGGTGCCACCAGCTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTT
* * * * *
65338 ------AAAAGGCGTCCTACT-TTCTGAGGAC-CGAAAATGCCACCAACTGGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTT-TGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTT
* * * *
65392 -----G-AAAGGCGTCATGCTCTTTGAGGACTAGGAAG-TGCCACCAACTTGTGTAGGCTTC
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTA-GAAGATGCCACCAACTTGTGTGGGCTTT
* * * * *
65447 AAAA-GAAGAAGGCGTCCTGCTCTTTAAGGACT-GAAAGGTGTCACCAACTTGTATGGGCTTT
1 AAAAGGAA-AAGGCATCCTGCTCTTTGAGGACTAG-AAGATGCCACCAACTTGTGTGGGCTTT
* * *
65508 AAAAGGAAAAGGCGTCTTGCTCTTTGAGGACTAGAAAAGTGCCACCAACTTGTGTGGGCTTT
1 AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGA-TGCCACCAACTTGTGTGGGCTTT
65570 AAAAGG
1 AAAAGG
65576 TATCCTGCTC
Statistics
Matches: 522, Mismatches: 55, Indels: 52
0.83 0.09 0.08
Matches are distributed among these distances:
53 2 0.00
54 63 0.12
55 22 0.04
56 3 0.01
59 2 0.00
60 55 0.11
61 260 0.50
62 115 0.22
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (61 bp):
AAAAGGAAAAGGCATCCTGCTCTTTGAGGACTAGAAGATGCCACCAACTTGTGTGGGCTTT
Found at i:66681 original size:1 final size:1
Alignment explanation
Indices: 66675--66767 Score: 60
Period size: 1 Copynumber: 93.0 Consensus size: 1
66665 AAATAGGTTC
* * ** * * * * ** *
66675 TTTTTTTTTCTCTTTTTTTTTGGTTTTGTTTTCTTTGTTTTTTTGTTTTTTTTAATTTTTTTTGT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * *
66740 TTTTTTGTTTTTTATTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTT
66768 AAAAAAGAAT
Statistics
Matches: 68, Mismatches: 24, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 68 1.00
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:66701 original size:22 final size:19
Alignment explanation
Indices: 66676--66767 Score: 85
Period size: 22 Copynumber: 4.4 Consensus size: 19
66666 AATAGGTTCT
66676 TTTTTTTTCTCTTTTTTTTTGG
1 TTTTTTTT-T-TTTTTTTTT-G
66698 TTTTGTTTTCTTTGTTTTTTTG
1 TTTT-TTTT-TTT-TTTTTTTG
**
66720 TTTTTTTTAATTTTTTTTG
1 TTTTTTTTTTTTTTTTTTG
66739 TTTTTTTGTTTTTTATTTTTTG
1 -TTTTTT-TTTTTT-TTTTTTG
66761 TTTTTTT
1 TTTTTTT
66768 AAAAAAGAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
19 8 0.13
20 8 0.13
21 14 0.23
22 18 0.30
23 13 0.21
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (19 bp):
TTTTTTTTTTTTTTTTTTG
Found at i:66736 original size:41 final size:41
Alignment explanation
Indices: 66689--66767 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 41
66679 TTTTTCTCTT
66689 TTTTTTTGGTTTTGTTT-TCTTTGT-TTTTTTGTTTTTTTTAA
1 TTTTTTTGGTTTT-TTTGT-TTTGTATTTTTTGTTTTTTTTAA
* *
66730 TTTTTTTTGTTTTTTTGTTTTTTATTTTTTGTTTTTTT
1 TTTTTTTGGTTTTTTTGTTTTGTATTTTTTGTTTTTTT
66768 AAAAAAGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 7 0.21
41 27 0.79
ACGTcount: A:0.04, C:0.01, G:0.10, T:0.85
Consensus pattern (41 bp):
TTTTTTTGGTTTTTTTGTTTTGTATTTTTTGTTTTTTTTAA
Found at i:66764 original size:27 final size:26
Alignment explanation
Indices: 66676--66767 Score: 86
Period size: 27 Copynumber: 3.6 Consensus size: 26
66666 AATAGGTTCT
* * *
66676 TTTTTTTTCTCTTTTTT-TTTGGTTTTG
1 TTTTTTTTGT-TTTTTTGTTT-TTTTTA
*
66703 TTTTCTTTGTTTTTTTGTTTTTTTTAA
1 TTTTTTTTGTTTTTTTGTTTTTTTT-A
66730 TTTTTTTTGTTTTTTTG--TTTTTTA
1 TTTTTTTTGTTTTTTTGTTTTTTTTA
66754 --TTTTTTGTTTTTTT
1 TTTTTTTTGTTTTTTT
66768 AAAAAAGAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 9
0.81 0.07 0.12
Matches are distributed among these distances:
22 14 0.24
24 1 0.02
25 6 0.10
26 10 0.17
27 27 0.47
ACGTcount: A:0.03, C:0.03, G:0.09, T:0.85
Consensus pattern (26 bp):
TTTTTTTTGTTTTTTTGTTTTTTTTA
Found at i:66767 original size:8 final size:8
Alignment explanation
Indices: 66698--66767 Score: 72
Period size: 8 Copynumber: 8.5 Consensus size: 8
66688 TTTTTTTTGG
66698 TTTTGTTT
1 TTTTGTTT
66706 TCTTTGTTT
1 T-TTTGTTT
66715 TTTTGTTTT
1 TTTTG-TTT
*
66724 TTTTAATTTT
1 TTTT--GTTT
66734 TTTTGTTT
1 TTTTGTTT
66742 TTTTG-TT
1 TTTTGTTT
*
66749 TTTT-ATT
1 TTTTGTTT
66756 TTTTGTTT
1 TTTTGTTT
66764 TTTT
1 TTTT
66768 AAAAAAGAAT
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
7 12 0.23
8 19 0.36
9 15 0.28
10 7 0.13
ACGTcount: A:0.04, C:0.01, G:0.09, T:0.86
Consensus pattern (8 bp):
TTTTGTTT
Found at i:67586 original size:19 final size:19
Alignment explanation
Indices: 67562--67627 Score: 81
Period size: 19 Copynumber: 3.8 Consensus size: 19
67552 TGTCAACGAT
67562 TTGTATCGATACATAAATG
1 TTGTATCGATACATAAATG
67581 TTGTATCGATAC---AA--
1 TTGTATCGATACATAAATG
*
67595 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAATG
67613 TTGTATCGATACATA
1 TTGTATCGATACATA
67628 TGAAGCTACT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
16 3 0.08
19 26 0.65
ACGTcount: A:0.35, C:0.12, G:0.17, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAATG
Found at i:67600 original size:13 final size:13
Alignment explanation
Indices: 67582--67606 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67572 ACATAAATGT
67582 TGTATCGATACAA
1 TGTATCGATACAA
67595 TGTATCGATACA
1 TGTATCGATACA
67607 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:67602 original size:32 final size:32
Alignment explanation
Indices: 67563--67625 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
67553 GTCAACGATT
67563 TGTATCGATACATAAATGTTGTATCGATACAA
1 TGTATCGATACATAAATGTTGTATCGATACAA
*
67595 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAATGTTGTATCGATACA
67626 TATGAAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAATGTTGTATCGATACAA
Found at i:67687 original size:13 final size:13
Alignment explanation
Indices: 67669--67693 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
67659 ATTACTCAAA
67669 TGTATCGATACAT
1 TGTATCGATACAT
67682 TGTATCGATACA
1 TGTATCGATACA
67694 CTATGAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:67708 original size:33 final size:34
Alignment explanation
Indices: 67648--67714 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 34
67638 GCCAAGAAAA
*
67648 TGTATCGATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACACTACTCAAATGTATCGATACAT
*
67682 TGTATCGATACACTA-TGAAATGTATCGATACAT
1 TGTATCGATACACTACTCAAATGTATCGATACAT
67715 GGAGGTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
33 17 0.55
34 14 0.45
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (34 bp):
TGTATCGATACACTACTCAAATGTATCGATACAT
Found at i:69892 original size:24 final size:26
Alignment explanation
Indices: 69865--69918 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
69855 TCAAAATTTT
69865 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
69889 ATTCTTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
69916 ATT
1 ATT
69919 TTCAACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
27 20 0.77
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:74681 original size:14 final size:14
Alignment explanation
Indices: 74664--74698 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
74654 AGTCAAAAGT
*
74664 AAACATAAAAAACA
1 AAACAAAAAAAACA
74678 AAACAAAAAAAACA
1 AAACAAAAAAAACA
74692 AAA-AAAA
1 AAACAAAA
74699 TGGAAAGGCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.86, C:0.11, G:0.00, T:0.03
Consensus pattern (14 bp):
AAACAAAAAAAACA
Found at i:74986 original size:21 final size:22
Alignment explanation
Indices: 74948--74988 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
74938 AACACACCAA
*
74948 AAAAAAACAAAAAGAGAAAAAG
1 AAAAAAACAAAAACAGAAAAAG
74970 AAAAAAAC-AAAACAGAAAA
1 AAAAAAACAAAAACAGAAAA
74989 TCTCGGTGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (22 bp):
AAAAAAACAAAAACAGAAAAAG
Found at i:76089 original size:64 final size:64
Alignment explanation
Indices: 76012--76473 Score: 352
Period size: 64 Copynumber: 7.1 Consensus size: 64
76002 CTCAGTGGAA
* *
76012 TTTTCTCCAAAGTCCACGACTTAGTGCCATCTTTTTCTCCAAAGTCCACAACTTAGTGCCATCT
1 TTTTCTCCAAAGTCCACGACTTAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGCCATCT
* * *
76076 TTTTCTCCAAAGTCCACGACTTAGTGGCAATCTCTTT-T-CAAAGTCCACGACTCAGTGGCATCT
1 TTTTCTCCAAAGTCCACGACTTAGTGGC-ATCTTTTTCTCCAAAGTCCACAACTCAGTGCCATC-
76139 TTTTT
64 ----T
* * * ** * *
76144 TTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCTCCAAAGTCCACAACTTAGTGGCAAT
1 TTTTC-TCCAAAGTCCACGACTTAGTGGCA-TCTTTTTCTCCAAAGTCCACAACTCAGT-GCCAT
76209 CT
63 CT
* * * * *
76211 CTTT-T-CAAAGTCCACGACTCAGTGGCATCTTTTTTTTTCTTTCAAAGCCCACAACTTC-GTGG
1 TTTTCTCCAAAGTCCACGACTTAGTGGCATC----TTTTTC-TCCAAAGTCCACAAC-TCAGTGC
76273 CACTCT
60 CA-TCT
* * * * *
76279 TTTTCTCCGAAGTCCACAACTTAGTGGCAATCTCTTT-T-CAAAGTCCACGACTCAGTGGCATCT
1 TTTTCTCCAAAGTCCACGACTTAGTGGC-ATCTTTTTCTCCAAAGTCCACAACTCAGTGCCATCT
** * * ** *
76342 TTTT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTCCAAAGTCCACAACTCAGTGGCAATC
1 TTTTCTCCAAAGTCCACGACTTAGTGGCA-TCTTTTTCTCCAAAGTCCACAACTCAGT-GCCATC
76406 T
64 T
* * ** * *
76407 CTTT-T-CAAAGTCCACGACTTAGTGGCATC-TTTTCTTCAAAACCCACAACTCCGTGGCACTCT
1 TTTTCTCCAAAGTCCACGACTTAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGCCA-TCT
76469 TTTTC
1 TTTTC
76474 CCTTTTAAAG
Statistics
Matches: 316, Mismatches: 54, Indels: 57
0.74 0.13 0.13
Matches are distributed among these distances:
61 3 0.01
62 50 0.16
63 35 0.11
64 98 0.31
65 18 0.06
67 16 0.05
68 28 0.09
69 26 0.08
70 19 0.06
71 19 0.06
72 4 0.01
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (64 bp):
TTTTCTCCAAAGTCCACGACTTAGTGGCATCTTTTTCTCCAAAGTCCACAACTCAGTGCCATCT
Found at i:76172 original size:38 final size:37
Alignment explanation
Indices: 76111--76573 Score: 147
Period size: 31 Copynumber: 13.9 Consensus size: 37
76101 GGCAATCTCT
*
76111 TTTCAAAGTCCACGACTCAGTGGCATCTTTTTTTTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATC-TTTTTTTTTC
* * *
76149 TTTCAAAGCCCACAACTCCGTGGCA-C--TCTTTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* * *
76183 -TCCAAAGTCCACAACTTAGTGGCAATC------TCT-
1 TTTCAAAGTCCACAACTCAGTGGC-ATCTTTTTTTTTC
*
76213 TTTCAAAGTCCACGACTCAGTGGCATCTTTTTTTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* *
76250 TTTCAAAGCCCACAACTTC-GTGGCA-C--TCTTTTTC
1 TTTCAAAGTCCACAAC-TCAGTGGCATCTTTTTTTTTC
* * * *
76284 -TCCGAAGTCCACAACTTAGTGGCAATC------TCT-
1 TTTCAAAGTCCACAACTCAGTGGC-ATCTTTTTTTTTC
*
76314 TTTCAAAGTCCACGACTCAGTGGCATC----TTTTT-
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* * *
76346 TTT-AAAGCCCACAACTCCGTGGCA-C--TCTTTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* *
76379 -TCCAAAGTCCACAACTCAGTGGCAATC------TCT-
1 TTTCAAAGTCCACAACTCAGTGGC-ATCTTTTTTTTTC
* *
76409 TTTCAAAGTCCACGACTTAGTGGCATC-----TTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
** * * **
76441 -TTCAAAACCCACAACTCCGTGGCA-CTCTTTTTCCC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* * * * *
76476 TTTTAAAGTCCACAACCCCGTGGCA-C--CTTGTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
* * *
76510 TTT-TAAGTCCACAACTCTGTGGCATC---TTGTTTC
1 TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
*
76543 TTT-TAAGTCCACAACTCTA-TGGCATCTTTTT
1 TTTCAAAGTCCACAACTC-AGTGGCATCTTTTT
76574 CCTTTTAAGT
Statistics
Matches: 332, Mismatches: 56, Indels: 76
0.72 0.12 0.16
Matches are distributed among these distances:
30 11 0.03
31 104 0.31
32 12 0.04
33 103 0.31
34 25 0.08
35 6 0.02
36 26 0.08
37 21 0.06
38 24 0.07
ACGTcount: A:0.22, C:0.29, G:0.13, T:0.35
Consensus pattern (37 bp):
TTTCAAAGTCCACAACTCAGTGGCATCTTTTTTTTTC
Found at i:76195 original size:33 final size:33
Alignment explanation
Indices: 76012--76605 Score: 411
Period size: 33 Copynumber: 18.1 Consensus size: 33
76002 CTCAGTGGAA
* * *
76012 TTTTCTCCAAAGTCCACGACTTAGTGCCA-TCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* *
76044 TTTTCTCCAAAGTCCACAACTTAGTGCCA-TCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* * *
76076 TTTTCTCCAAAGTCCACGACTTAGTGGCAATCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* * *
76109 CTTT-T-CAAAGTCCACGACTCAGTGGCATCTTTTTT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCA-C---TCT
* * *
76144 TTTTCTTTCAAAGCCCACAACTCCGTGGCACTCT
1 TTTTC-TCCAAAGTCCACAACTCAGTGGCACTCT
* *
76178 TTTTCTCCAAAGTCCACAACTTAGTGGCAATCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* * *
76211 CTTT-T-CAAAGTCCACGACTCAGTGGCATCTTTTT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCA-C--TCT
* *
76245 TTTTCTTTCAAAGCCCACAACTTC-GTGGCACTCT
1 TTTTC-TCCAAAGTCCACAAC-TCAGTGGCACTCT
* * *
76279 TTTTCTCCGAAGTCCACAACTTAGTGGCAATCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* *
76312 CTTT-T-CAAAGTCCACGACTCAGTGGCA-TCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
** * *
76342 TTTT-TTTAAAGCCCACAACTCCGTGGCACTCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
*
76374 TTTTCTCCAAAGTCCACAACTCAGTGGCAATCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* * *
76407 CTTT-T-CAAAGTCCACGACTTAGTGGCA-TC-
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* ** *
76436 TTTTCTTCAAAACCCACAACTCCGTGGCACTCT
1 TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
* *
76469 TTTTC-CCTTTTAAAGTCCACAACCCCGTGGCAC-CT
1 TTTTCTCC----AAAGTCCACAACTCAGTGGCACTCT
*** *
76504 TGTTTCTTTTAAGTCCACAACTCTGTGGCA-TCT
1 T-TTTCTCCAAAGTCCACAACTCAGTGGCACTCT
***
76537 TGTTTCTTTTAAGTCCACAACTCTA-TGGCA-TCT
1 T-TTTCTCCAAAGTCCACAACTC-AGTGGCACTCT
*** *
76570 TTTTCCTTTTAAGTCCACAACTCTA-TGGCACCCT
1 TTTT-CTCCAAAGTCCACAACTC-AGTGGCACTCT
76604 TT
1 TT
76606 CCCCTTTTAA
Statistics
Matches: 464, Mismatches: 65, Indels: 64
0.78 0.11 0.11
Matches are distributed among these distances:
29 3 0.01
30 10 0.02
31 115 0.25
32 76 0.16
33 164 0.35
34 23 0.05
35 8 0.02
36 25 0.05
37 19 0.04
38 21 0.05
ACGTcount: A:0.22, C:0.30, G:0.13, T:0.35
Consensus pattern (33 bp):
TTTTCTCCAAAGTCCACAACTCAGTGGCACTCT
Found at i:76296 original size:101 final size:97
Alignment explanation
Indices: 76019--76473 Score: 670
Period size: 95 Copynumber: 4.7 Consensus size: 97
76009 GAATTTTCTC
* * * * ** *
76019 CAAAGTCCACGACTTAGTGCCATCTTTTTC-TCCAAAGTCCACAACTTAGTGCCA-TCTTTTTCT
1 CAAAGTCCACGACTCAGTGGCATCTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCT
*
76082 CCAAAGTCCACGACTTAGTGGCAATCTCTTTT
66 CCAAAGTCCACAACTTAGTGGCAATCTCTTTT
76114 CAAAGTCCACGACTCAGTGGCATCTTTTTTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTT
1 CAAAGTCCACGACTCAGTGGCATC-----TTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTT
76179 TTTCTCCAAAGTCCACAACTTAGTGGCAATCTCTTTT
61 TTTCTCCAAAGTCCACAACTTAGTGGCAATCTCTTTT
*
76216 CAAAGTCCACGACTCAGTGGCATCTTTTTTTTTCTTTCAAAGCCCACAACTTCGTGGCACTCTTT
1 CAAAGTCCACGACTCAGTGGCATC----TTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTT
*
76281 TTCTCCGAAGTCCACAACTTAGTGGCAATCTCTTTT
62 TTCTCCAAAGTCCACAACTTAGTGGCAATCTCTTTT
76317 CAAAGTCCACGACTCAGTGGCATCTTTTT-TTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCT
1 CAAAGTCCACGACTCAGTGGCATCTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCT
*
76380 CCAAAGTCCACAACTCAGTGGCAATCTCTTTT
66 CCAAAGTCCACAACTTAGTGGCAATCTCTTTT
* *
76412 CAAAGTCCACGACTTAGTGGCATC-TTTTC-TTCAAAACCCACAACTCCGTGGCACTCTTTTTC
1 CAAAGTCCACGACTCAGTGGCATCTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTC
76474 CCTTTTAAAG
Statistics
Matches: 336, Mismatches: 15, Indels: 18
0.91 0.04 0.05
Matches are distributed among these distances:
94 6 0.02
95 134 0.40
96 3 0.01
97 5 0.01
100 6 0.02
101 118 0.35
102 64 0.19
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (97 bp):
CAAAGTCCACGACTCAGTGGCATCTTTTTCTTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCT
CCAAAGTCCACAACTTAGTGGCAATCTCTTTT
Found at i:76637 original size:134 final size:133
Alignment explanation
Indices: 76288--76700 Score: 388
Period size: 134 Copynumber: 3.2 Consensus size: 133
76278 TTTTTCTCCG
* ** * *
76288 AAGTCCACAACTTAGTGGCAATCTCTT-TTCAAAGTCCACGACT-CAGTGGCA-T-CTTT---TT
1 AAGTCCACAACTTAGTGGC-ATCTTTTCTTCAAAACCCACAACTCCA-TGGCACTCCTTTCCCCT
***
76346 TTTAAAGCCCACAACTCCGTGGCACTCTT-TTTCTCCAAAGTCCACAACTCAGTGGCAATCTCT-
64 TTTAAAGCCCACAACTCCGTGGCAC-CTTGTTTCTTTTAAGTCCACAACTCAGTGGC-ATCT-TG
*
76409 TTTC---A
126 TTTCTTTT
* * * *
76414 AAGTCCACGACTTAGTGGCATCTTTTCTTCAAAACCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACAACTTAGTGGCATCTTTTCTTCAAAACCCACAACTCCATGGCACTCCTTTCCCCTTT
* * *
76479 TAAAGTCCACAACCCCGTGGCACCTTGTTTCTTTTAAGTCCACAACTCTGTGGCATCTTGTTTCT
66 TAAAGCCCACAACTCCGTGGCACCTTGTTTCTTTTAAGTCCACAACTCAGTGGCATCTTGTTTCT
76544 TTT
131 TTT
** ** *
76547 AAGTCCACAACTCTA-TGGCATCTTTTTCCTTTTAAGTCCACAACTCTATGGCAC-CCTTTCCCC
1 AAGTCCACAACT-TAGTGGCATC-TTTT-CTTCAAAACCCACAACTCCATGGCACTCCTTTCCCC
* * *
76610 TTTTAAAGCCCCCAACTCCGTGACACCTTG-TTCTTTTTAAGTCCACAACTCCGTGGCATCTTGT
63 TTTTAAAGCCCACAACTCCGTGGCACCTTGTTTC-TTTTAAGTCCACAACTCAGTGGCATCTTGT
*
76674 TCCTTTT
127 TTCTTTT
* * *
76681 AAGCCCATAAGTTAGTGGCA
1 AAGTCCACAACTTAGTGGCA
76701 ACCTTCAAAA
Statistics
Matches: 237, Mismatches: 33, Indels: 26
0.80 0.11 0.09
Matches are distributed among these distances:
125 6 0.03
126 36 0.15
127 2 0.01
128 3 0.01
129 1 0.00
130 11 0.05
131 47 0.20
133 23 0.10
134 88 0.37
135 20 0.08
ACGTcount: A:0.23, C:0.30, G:0.13, T:0.34
Consensus pattern (133 bp):
AAGTCCACAACTTAGTGGCATCTTTTCTTCAAAACCCACAACTCCATGGCACTCCTTTCCCCTTT
TAAAGCCCACAACTCCGTGGCACCTTGTTTCTTTTAAGTCCACAACTCAGTGGCATCTTGTTTCT
TTT
Found at i:76640 original size:101 final size:99
Alignment explanation
Indices: 76449--76683 Score: 276
Period size: 101 Copynumber: 2.3 Consensus size: 99
76439 TCTTCAAAAC
* **
76449 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTTCTTTT
1 CCACAACTCCGTGGCA-TCTTTTT-CCTTTT-AAGTCCACAACCCCATGGCACCTTGTCCCTTTT
* * * *
76514 AAGTCCACAACTCTGTGGCATCTTGTT-TCTTTTAAGT
63 AAGCCCACAACTCCGTGACACCTTGTTCT-TTTTAAGT
** * *
76551 CCACAACTCTATGGCATCTTTTTCCTTTTAAGTCCACAACTCTATGGCACCCTT-TCCCCTTTTA
1 CCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACCCCATGGCA-CCTTGT-CCCTTTT-
*
76615 AAGCCCCCAACTCCGTGACACCTTGTTCTTTTTAAGT
63 AAGCCCACAACTCCGTGACACCTTGTTCTTTTTAAGT
*
76652 CCACAACTCCGTGGCATCTTGTTCCTTTTAAG
1 CCACAACTCCGTGGCATCTTTTTCCTTTTAAG
76684 CCCATAAGTT
Statistics
Matches: 114, Mismatches: 15, Indels: 9
0.83 0.11 0.07
Matches are distributed among these distances:
99 18 0.16
100 15 0.13
101 66 0.58
102 15 0.13
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (99 bp):
CCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCACAACCCCATGGCACCTTGTCCCTTTTAAG
CCCACAACTCCGTGACACCTTGTTCTTTTTAAGT
Found at i:76699 original size:33 final size:34
Alignment explanation
Indices: 76449--76705 Score: 208
Period size: 33 Copynumber: 7.6 Consensus size: 34
76439 TCTTCAAAAC
* *
76449 CCACAACTC-CGTGGCACTCTTTTTCCCTTTTAAAGT
1 CCACAACTCTAGTGGCAC-CTTGTT-CCTTTT-AAGT
** *
76485 CCACAAC-CCCGTGGCACCTTGTTTCTTTTAAGT
1 CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
* *
76518 CCACAACTCT-GTGGCATCTTGTTTCTTTTAAGT
1 CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
* *
76551 CCACAACTCTA-TGGCATCTTTTTCCTTTTAAGT
1 CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
* *
76584 CCACAACTCTA-TGGCACCCTT-TCCCCTTTTAAAGC
1 CCACAACTCTAGTGGCA-CCTTGT-TCCTTTT-AAGT
* * * *
76619 CCCCAACTC-CGTGACACCTTGTTCTTTTTAAGT
1 CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
* * *
76652 CCACAACTC-CGTGGCATCTTGTTCCTTTTAAGC
1 CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
* *
76685 CCATAAGT-TAGTGGCAACCTT
1 CCACAACTCTAGTGGC-ACCTT
76706 CAAAAGCGCA
Statistics
Matches: 187, Mismatches: 24, Indels: 22
0.80 0.10 0.09
Matches are distributed among these distances:
33 122 0.65
34 28 0.15
35 22 0.12
36 15 0.08
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (34 bp):
CCACAACTCTAGTGGCACCTTGTTCCTTTTAAGT
Found at i:76700 original size:101 final size:101
Alignment explanation
Indices: 76521--76705 Score: 248
Period size: 101 Copynumber: 1.8 Consensus size: 101
76511 TTTAAGTCCA
* * * * * *
76521 CAACTCTGTGGCATCTTGTTTCTTTTAAGTCCACAACTCTATGGCATCTTTTTCCTTTTAAGTCC
1 CAACTCCGTGACACCTTGTTTCTTTTAAGTCCACAACTCCATGGCATCTTGTTCCTTTTAAGCCC
*
76586 ACAACTCTATGGCACCCTTTCCCCTTTTAAAGCCCC
66 ACAACTCTATGGCAACCTTTCCCCTTTTAAAGCCCC
*
76622 CAACTCCGTGACACCTTG-TTCTTTTTAAGTCCACAACTCCGTGGCATCTTGTTCCTTTTAAGCC
1 CAACTCCGTGACACCTTGTTTC-TTTTAAGTCCACAACTCCATGGCATCTTGTTCCTTTTAAGCC
* *
76686 CATAAGT-TAGTGGCAACCTT
65 CACAACTCTA-TGGCAACCTT
76706 CAAAAGCGCA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
100 5 0.07
101 67 0.93
ACGTcount: A:0.21, C:0.30, G:0.13, T:0.36
Consensus pattern (101 bp):
CAACTCCGTGACACCTTGTTTCTTTTAAGTCCACAACTCCATGGCATCTTGTTCCTTTTAAGCCC
ACAACTCTATGGCAACCTTTCCCCTTTTAAAGCCCC
Found at i:76941 original size:49 final size:49
Alignment explanation
Indices: 76766--77377 Score: 838
Period size: 49 Copynumber: 12.6 Consensus size: 49
76756 GGCGTCTTCT
* * *
76766 TTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCGTCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCACC
*
76818 TTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--T-TCACC
*
76870 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
* *
76919 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATGGGCACC-TCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
76967 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
* * *
77016 TTTAAGTCCAATGTAGCTGCCCTTGAATCAGCACATTGGCACC-TCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
* *
77064 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG------CACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
77107 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
77156 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGG------CACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
77199 TTTAAGTCCAATATAGCTGGCCTTGAATCAGTATATTGGCACCTTCACC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
77248 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
** * *
77297 TTTAAGTCCAAGGTAGCTGGCCTTGAATCAGCATATTGGCGCCCTCGTCATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGC-ACCT--TCACC
* *
77349 TTTAAGTCCAATGTCGCTGGCCTTGAATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATC
77378 CGCACATCGA
Statistics
Matches: 513, Mismatches: 30, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
43 81 0.16
48 87 0.17
49 219 0.43
50 4 0.01
52 120 0.23
53 2 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACC
Found at i:77001 original size:97 final size:98
Alignment explanation
Indices: 76766--77377 Score: 856
Period size: 97 Copynumber: 6.3 Consensus size: 98
76756 GGCGTCTTCT
* * * *
76766 TTTAAGCCCAATATCGCTGGCCTTGAATCAACATATTGGCACCTTCGTCACCTTTAAGTCCAATA
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC-T--TCATCTTTAAGTCCAATA
*
76831 TCGCTGGCCTTGAATCAGCATATTGGCACCTTTATCACC
63 TAGCTGGCCTTGAATCAGCATATTGGCACC--T-TCACC
76870 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
* *
76935 CTGGCCTTGAATCAGCACATGGGCACC-TCACC
66 CTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
76967 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
* *
77032 CTGCCCTTGAATCAGCACATTGGCACC-TCACC
66 CTGGCCTTGAATCAGCATATTGGCACCTTCACC
* *
77064 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
*
77123 CTGGCCTTGAATCAGCATATTGGCACCTTCATC
66 CTGGCCTTGAATCAGCATATTGGCACCTTCACC
*
77156 TTTAAGTCCAATGTAGCTGGCCTTGAATCAGCATATTGGCA----C--CTTTAAGTCCAATATAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
*
77215 CTGGCCTTGAATCAGTATATTGGCACCTTCACC
66 CTGGCCTTGAATCAGCATATTGGCACCTTCACC
**
77248 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAAGGTAG
1 TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
* *
77313 CTGGCCTTGAATCAGCATATTGGCGCCCTCGTCATC
66 CTGGCCTTGAATCAGCATATTGGC-ACCT--TCACC
* *
77349 TTTAAGTCCAATGTCGCTGGCCTTGAATC
1 TTTAAGTCCAATATAGCTGGCCTTGAATC
77378 CGCACATCGA
Statistics
Matches: 471, Mismatches: 27, Indels: 23
0.90 0.05 0.04
Matches are distributed among these distances:
91 41 0.09
92 133 0.28
93 1 0.00
96 1 0.00
97 138 0.29
98 38 0.08
99 3 0.01
101 75 0.16
103 1 0.00
104 40 0.08
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (98 bp):
TTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATATAG
CTGGCCTTGAATCAGCATATTGGCACCTTCACC
Found at i:77200 original size:21 final size:21
Alignment explanation
Indices: 77176--77243 Score: 59
Period size: 21 Copynumber: 3.2 Consensus size: 21
77166 ATGTAGCTGG
*
77176 CCTTGAATCAGCATATTGGCA
1 CCTTGAATCAGTATATTGGCA
* * *
77197 CCTTTAAGTCCAATATAGCTGG--
1 CCTTGAA-T-CAGTATA-TTGGCA
77219 CCTTGAATCAGTATATTGGCA
1 CCTTGAATCAGTATATTGGCA
77240 CCTT
1 CCTT
77244 CACCTTTAAG
Statistics
Matches: 35, Mismatches: 7, Indels: 10
0.67 0.13 0.19
Matches are distributed among these distances:
19 3 0.09
20 6 0.17
21 11 0.31
22 7 0.20
23 5 0.14
24 3 0.09
ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32
Consensus pattern (21 bp):
CCTTGAATCAGTATATTGGCA
Found at i:77222 original size:22 final size:22
Alignment explanation
Indices: 77155--77222 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
77145 GCACCTTCAT
*
77155 CTTTAAGTCCAATGTAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
* ** *
77177 CTTGAA-T-CAGCATA-TTGGCAC
1 CTTTAAGTCCAATATAGCTGG--C
77198 CTTTAAGTCCAATATAGCTGGC
1 CTTTAAGTCCAATATAGCTGGC
77220 CTT
1 CTT
77223 GAATCAGTAT
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 3 0.09
20 4 0.12
21 7 0.22
22 10 0.31
23 5 0.16
24 3 0.09
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (22 bp):
CTTTAAGTCCAATATAGCTGGC
Found at i:78337 original size:19 final size:19
Alignment explanation
Indices: 78313--78378 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 19
78303 TGTCAATGAT
78313 TTGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
78332 TTGTATCGATAC--AA---
1 TTGTATCGATACATAAGTG
78346 -TGTATCGATACATAAGTG
1 TTGTATCGATACATAAGTG
78364 TTGTATCGATACATA
1 TTGTATCGATACATA
78379 TGAAGCTACT
Statistics
Matches: 41, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.27
15 2 0.05
17 2 0.05
19 26 0.63
ACGTcount: A:0.33, C:0.12, G:0.18, T:0.36
Consensus pattern (19 bp):
TTGTATCGATACATAAGTG
Found at i:78351 original size:13 final size:13
Alignment explanation
Indices: 78333--78357 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78323 ACATAAGTGT
78333 TGTATCGATACAA
1 TGTATCGATACAA
78346 TGTATCGATACA
1 TGTATCGATACA
78358 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:78355 original size:32 final size:32
Alignment explanation
Indices: 78314--78376 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
78304 GTCAATGATT
78314 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
78346 TGTATCGATACATAAGTGTTGTATCGATACA
1 TGTATCGATACATAAGTGTTGTATCGATACA
78377 TATGAAGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:78459 original size:33 final size:34
Alignment explanation
Indices: 78399--78465 Score: 100
Period size: 33 Copynumber: 2.0 Consensus size: 34
78389 GCCAAGAAAA
*
78399 TGTATCGATACATTACTCAAATGTATCGATACAT
1 TGTATCGATACACTACTCAAATGTATCGATACAT
* *
78433 TGTATCTATACACTA-TGAAATGTATCGATACAT
1 TGTATCGATACACTACTCAAATGTATCGATACAT
78466 GCAGGCAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 17 0.57
34 13 0.43
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.36
Consensus pattern (34 bp):
TGTATCGATACACTACTCAAATGTATCGATACAT
Found at i:79659 original size:24 final size:26
Alignment explanation
Indices: 79632--79685 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 26
79622 TCAAAATTTT
79632 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
79656 ATTCTTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
79683 ATT
1 ATT
79686 TTCAACCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 5 0.19
25 1 0.04
27 20 0.77
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:81636 original size:18 final size:18
Alignment explanation
Indices: 81613--81647 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81603 CGCGCGTTTG
81613 CCATTCTCCCTTCAATTT
1 CCATTCTCCCTTCAATTT
*
81631 CCATTCTTCCTTCAATT
1 CCATTCTCCCTTCAATT
81648 GGTAAACGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.37, G:0.00, T:0.46
Consensus pattern (18 bp):
CCATTCTCCCTTCAATTT
Found at i:82547 original size:13 final size:13
Alignment explanation
Indices: 82529--82559 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82519 ACATTTCTTC
82529 ATGTATCGATACA
1 ATGTATCGATACA
82542 ATGTATCGATACA
1 ATGTATCGATACA
*
82555 TTGTA
1 ATGTA
82560 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:82547 original size:33 final size:33
Alignment explanation
Indices: 82509--82572 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
82499 GTTACAAGCT
82509 ATGTATCGATACATT-T-CTTCATGTATCGATACA
1 ATGTATCGATACATTGTAC--CATGTATCGATACA
82542 ATGTATCGATACATTGTACCATGTATCGATA
1 ATGTATCGATACATTGTACCATGTATCGATA
82573 TAAATAGTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
33 27 0.93
34 1 0.03
35 1 0.03
ACGTcount: A:0.31, C:0.17, G:0.14, T:0.38
Consensus pattern (33 bp):
ATGTATCGATACATTGTACCATGTATCGATACA
Found at i:82642 original size:13 final size:13
Alignment explanation
Indices: 82626--82656 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
82616 CAATTTGTCC
82626 ATGTATCGATACA
1 ATGTATCGATACA
82639 ATGTATCGATACA
1 ATGTATCGATACA
*
82652 TTGTA
1 ATGTA
82657 CCATGTATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:82664 original size:33 final size:34
Alignment explanation
Indices: 82605--82669 Score: 98
Period size: 33 Copynumber: 1.9 Consensus size: 34
82595 TGCCAGTTTC
*
82605 ATGTGTCGATACAATTTGTCCATGTATCGATACA
1 ATGTATCGATACAATTTGTCCATGTATCGATACA
82639 ATGTATCGATAC-A-TTGTACCATGTATCGATA
1 ATGTATCGATACAATTTGT-CCATGTATCGATA
82670 TAAATAGTGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 14 0.48
34 11 0.38
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (34 bp):
ATGTATCGATACAATTTGTCCATGTATCGATACA
Found at i:82696 original size:97 final size:97
Alignment explanation
Indices: 82509--82738 Score: 408
Period size: 97 Copynumber: 2.4 Consensus size: 97
82499 GTTACAAGCT
* *
82509 ATGTATCGATAC-ATTTCTTCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
1 ATGTATCGATACAATTTGTCCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
* *
82573 TAAATAGTGATAGGGTAGCTATTGCCAGTTTC
66 TAAATAGTGATAGGGTAGCCACTGCCAGTTTC
*
82605 ATGTGTCGATACAATTTGTCCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
1 ATGTATCGATACAATTTGTCCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
82670 TAAATAGTGATAGGGTAGCCACTGCCAGTTTC
66 TAAATAGTGATAGGGTAGCCACTGCCAGTTTC
82702 ATGTATCGATACAATTTGTCCATGTATCGATACAATG
1 ATGTATCGATACAATTTGTCCATGTATCGATACAATG
82739 AACATGTATC
Statistics
Matches: 127, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
96 11 0.09
97 116 0.91
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35
Consensus pattern (97 bp):
ATGTATCGATACAATTTGTCCATGTATCGATACAATGTATCGATACATTGTACCATGTATCGATA
TAAATAGTGATAGGGTAGCCACTGCCAGTTTC
Found at i:82746 original size:19 final size:19
Alignment explanation
Indices: 82701--82757 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
82691 CTGCCAGTTT
**
82701 CATGTATCGATACAATTTGTC
1 CATGTATCGATACAA--TGAA
82722 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
*
82741 CATGTATCGATATAATG
1 CATGTATCGATACAATG
82758 TATCGATACA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
19 18 0.55
21 15 0.45
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.33
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:82764 original size:32 final size:33
Alignment explanation
Indices: 82723--82785 Score: 101
Period size: 32 Copynumber: 1.9 Consensus size: 33
82713 CAATTTGTCC
*
82723 ATGTATCGATACAATG-AACATGTATCGATATA
1 ATGTATCGATACAAAGCAACATGTATCGATATA
*
82755 ATGTATCGATACAAAGCAGCATGTATCGATA
1 ATGTATCGATACAAAGCAACATGTATCGATA
82786 CATCTGGGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
32 15 0.54
33 13 0.46
ACGTcount: A:0.40, C:0.14, G:0.17, T:0.29
Consensus pattern (33 bp):
ATGTATCGATACAAAGCAACATGTATCGATATA
Found at i:91338 original size:13 final size:13
Alignment explanation
Indices: 91320--91350 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
91310 ACATTTCTTC
91320 ATGTATCGATACA
1 ATGTATCGATACA
91333 ATGTATCGATACA
1 ATGTATCGATACA
*
91346 TTGTA
1 ATGTA
91351 GCATGTAACG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:91356 original size:33 final size:33
Alignment explanation
Indices: 91300--91366 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 33
91290 ATTACAAGCT
** *
91300 ATGTATCGATACATTTCTTCATGTATCGATACA
1 ATGTATCGATACATTTCAGCATGTAACGATACA
91333 ATGTATCGATACATTGT-AGCATGTAACGATACA
1 ATGTATCGATACATT-TCAGCATGTAACGATACA
91366 A
1 A
91367 ATAGTGATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
33 29 0.97
34 1 0.03
ACGTcount: A:0.34, C:0.16, G:0.15, T:0.34
Consensus pattern (33 bp):
ATGTATCGATACATTTCAGCATGTAACGATACA
Found at i:98677 original size:13 final size:13
Alignment explanation
Indices: 98659--98684 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
98649 ATATTTTTTG
98659 TGTATCGATACAT
1 TGTATCGATACAT
98672 TGTATCGATACAT
1 TGTATCGATACAT
98685 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:98695 original size:32 final size:33
Alignment explanation
Indices: 98638--98702 Score: 114
Period size: 32 Copynumber: 2.0 Consensus size: 33
98628 TACAAGCCAA
98638 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCGATACAT
98672 TGTATCGATACATA-TTTTGTGTATCGATACA
1 TGTATCGATACATATTTTTGTGTATCGATACA
98703 AGTTTGGCTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
32 17 0.55
34 14 0.45
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCGATACAT
Found at i:98696 original size:19 final size:19
Alignment explanation
Indices: 98638--98702 Score: 70
Period size: 19 Copynumber: 3.6 Consensus size: 19
98628 TACAAGCCAA
98638 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
98659 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
98672 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
98691 TGTATCGATACA
1 TGTATCGATACA
98703 AGTTTGGCTA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
15 1 0.03
18 1 0.03
19 13 0.34
21 11 0.29
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:99352 original size:18 final size:18
Alignment explanation
Indices: 99329--99364 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
99319 AATCAAAATA
*
99329 ATTTTAACAAATTTGTAC
1 ATTTTAACAAATTCGTAC
99347 ATTTTAACAAATTCGTAC
1 ATTTTAACAAATTCGTAC
99365 TTTCTCCCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.14, G:0.06, T:0.42
Consensus pattern (18 bp):
ATTTTAACAAATTCGTAC
Found at i:102828 original size:15 final size:15
Alignment explanation
Indices: 102792--102829 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
102782 TTCATCAATT
* *
102792 TCATTTGGAGCTTCT
1 TCATTTTGAGCTTCC
102807 TCATTTTGAGCTTCC
1 TCATTTTGAGCTTCC
102822 TCATTTTG
1 TCATTTTG
102830 GACATTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.13, C:0.21, G:0.16, T:0.50
Consensus pattern (15 bp):
TCATTTTGAGCTTCC
Found at i:104660 original size:21 final size:21
Alignment explanation
Indices: 104631--104675 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
104621 AAGTTTTTAT
*
104631 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
104651 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
104673 TTT
1 TTT
104676 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:107265 original size:655 final size:655
Alignment explanation
Indices: 106016--109298 Score: 6431
Period size: 655 Copynumber: 5.0 Consensus size: 655
106006 GAGACACATT
106016 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
1 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
* * *
106081 CGTCTCTCCCGGGTGTGAATCCGTTGAATGGAGGTTAAGCTCTGATACCAATTGAAAGCTTATCA
66 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
* * *
106146 AGTAACGAACCAAGTGGGGGGGTGAATTGGTTCTTTTCAAATTTTCGGTTTTGAAACAACACAAT
131 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
* *
106211 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTCACACATGATATTTATAGAGGTTCGGTCCAAA
196 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
* *
106276 CATGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCGA
261 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
106341 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
326 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
*
106406 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTATCACA
391 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
106471 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
456 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
106536 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
521 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
106601 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
586 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
106666 TACTC
651 TACTC
106671 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
1 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
*
106736 CGTCTCTCCCGGGTGTGAATCCGTTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
66 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
106801 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
131 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
106866 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
196 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
*
106931 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCGA
261 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
106996 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
326 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
107061 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
391 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
107126 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
456 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
107191 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
521 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
107256 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
586 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
107321 TACTC
651 TACTC
107326 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
1 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
107391 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
66 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
107456 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
131 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
107521 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
196 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
107586 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
261 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
107651 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
326 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
107716 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
391 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
107781 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
456 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
107846 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
521 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
107911 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
586 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
107976 TACTC
651 TACTC
*
107981 TCTTCTTGGTTCATCAAAATTGAGTTGTTGACCATTGCACCTTCCATTCTTGATTTGAAATTGAT
1 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
*
108046 CGTCTCTCCCGGGTGTGAATCCCTTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
66 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
108111 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
131 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
108176 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
196 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
108241 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
261 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
108306 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
326 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
108371 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
391 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
108436 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
456 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
108501 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
521 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
108566 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
586 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
108631 TACTC
651 TACTC
108636 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
1 TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
108701 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
66 CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
108766 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
131 AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
108831 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
196 TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
108896 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
261 CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
108961 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
326 ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
109026 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
391 CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
109091 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
456 ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
109156 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
521 AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
109221 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
586 GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
109286 TACTC
651 TACTC
109291 TCTTCTTG
1 TCTTCTTG
109299 TGTTTGTTAC
Statistics
Matches: 2613, Mismatches: 15, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
655 2613 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.31
Consensus pattern (655 bp):
TCTTCTTGGTTCATCAAAATTGAGTTGTTGATCATTGCACCTTCCATTCTTGATTTGAAATTGAT
CGTCTCTCCCGGGTGTGAATCCATTGAACGGAGGTTAAGCTCTAATACCAATTGAAAGCTTATCA
AGTAACGAACCAAGAGTGGGGGTGAATTGGTTCTTTTCGAATTTTCGGTTTTGAAACAACACAAT
TCGAAATGAAAAGAGATTAGGGAAGGAAAACTTGACACAAGATATTTATAGAGGTTCGGTCCAAA
CACGGCACCTACGTCCTCTCTCCTCGACACTTCCTCGTCGAGTGATTACCCAATTCACTAACCAA
ATTGATTACCTTTAAGGCAAAGGTATAACCTTACAACTCGTATCTTTTACGGGCTTAGATACCAA
CCTTACAATCTCTTTGCAAACTATACCACAAGTTCCAAAGAGATTCTCTCTCAAGGTTTACCACA
ACCTTATGACAACAAGGATTTTTCTACAAACAAAGTTTGCCTCTAACTAGGCTTGTGTTTGTGAG
AATTTAAGCTCGAAATCAAATACAAAGAGCTTAGAAAAATAATAACAATATGAACAAAAGCTCTT
GAAAAATATAAAACACTTTGATCTAAGAAAACTTTGAATGCTAGATGTTTCTTGCTTGGTTCTAC
TACTC
Found at i:109533 original size:13 final size:13
Alignment explanation
Indices: 109515--109539 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109505 ATATTTTTTG
109515 TGTATCGATACAT
1 TGTATCGATACAT
109528 TGTATCGATACA
1 TGTATCGATACA
109540 GATTTTGTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:109551 original size:32 final size:33
Alignment explanation
Indices: 109494--109558 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
109484 TACAAGCCAA
*
109494 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACAGA-TTTTTGTGTATCGATACAT
109528 TGTATCGATACAGA-TTTTGTGTATCGATACA
1 TGTATCGATACAGATTTTTGTGTATCGATACA
109559 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 17 0.57
34 13 0.43
ACGTcount: A:0.28, C:0.12, G:0.17, T:0.43
Consensus pattern (33 bp):
TGTATCGATACAGATTTTTGTGTATCGATACAT
Found at i:110912 original size:17 final size:19
Alignment explanation
Indices: 110876--110913 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
110866 TAGATTTACT
*
110876 TTAAGTAAAATGGTTTTAA
1 TTAAGTAAAATAGTTTTAA
110895 TTAAGTAAAA-AG-TTTAA
1 TTAAGTAAAATAGTTTTAA
110912 TT
1 TT
110914 TAGACTTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 1 0.06
19 10 0.56
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.42
Consensus pattern (19 bp):
TTAAGTAAAATAGTTTTAA
Found at i:114198 original size:156 final size:154
Alignment explanation
Indices: 113962--114249 Score: 461
Period size: 156 Copynumber: 1.9 Consensus size: 154
113952 TTCCATACTG
* * *
113962 GGTTAACTTTCATGGAATCCATTTCTATCTTATGGCCTCTAGCTCTCTTTTGGAATCAATGTCGG
1 GGTTAACTTCCATGGAATCCATTTCTATCTCATGGCCTCTAGCTCTCTTTTGGAATCAATGTCAG
* *
114027 ACATTCCTTATACATAGTAGATTTCTCATAAATAGAAAAAACAACATTTTACAACAGAAATCCTT
66 ACATTCCTCACACATAGTAGATTTCTCATAAATAGAAAAAACAACATTTTACAACAGAAATCCTT
114092 ATGGGTTAACCCAATTACACATTA
131 ATGGGTTAACCCAATTACACATTA
114116 GGTTAACTTCCATGGAATCCATTTCGTATCTCATGGCCTCTAGC-CAATCTTTTGGAATCAATGT
1 GGTTAACTTCCATGGAATCCATTTC-TATCTCATGGCCTCTAGCTC--TCTTTTGGAATCAATGT
** * *
114180 CAGACATTCCTCACACATAGTAGATTTCTCATAAATAGGTAAAACAACTTTTTACAATAGAAATC
63 CAGACATTCCTCACACATAGTAGATTTCTCATAAATAGAAAAAACAACATTTTACAACAGAAATC
114245 CTTAT
128 CTTAT
114250 CTATCTGGAA
Statistics
Matches: 122, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
154 25 0.20
155 17 0.14
156 80 0.66
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34
Consensus pattern (154 bp):
GGTTAACTTCCATGGAATCCATTTCTATCTCATGGCCTCTAGCTCTCTTTTGGAATCAATGTCAG
ACATTCCTCACACATAGTAGATTTCTCATAAATAGAAAAAACAACATTTTACAACAGAAATCCTT
ATGGGTTAACCCAATTACACATTA
Found at i:115478 original size:21 final size:21
Alignment explanation
Indices: 115453--115502 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
115443 AGCTTGTGTA
*
115453 TCAATACAAGTTTATGAAGTG
1 TCAATACAAGTTGATGAAGTG
115474 TCAATACAAGTTGATGAAGTG
1 TCAATACAAGTTGATGAAGTG
*
115495 TCGATACA
1 TCAATACA
115503 TATTTCTAAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (21 bp):
TCAATACAAGTTGATGAAGTG
Found at i:116496 original size:19 final size:20
Alignment explanation
Indices: 116452--116503 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
116442 TACAAGCCAA
116452 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA-TTTTTG
*
116473 GGTATCGATACATA-TTTTG
1 TGTATCGATACATATTTTTG
116492 TGTATCGATACA
1 TGTATCGATACA
116504 AGTTTGGCTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 16 0.55
21 13 0.45
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (20 bp):
TGTATCGATACATATTTTTG
Found at i:119046 original size:13 final size:13
Alignment explanation
Indices: 119028--119065 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
119018 ATAATCCCCC
*
119028 TGTATCGATATAG
1 TGTATCGATACAG
*
119041 TGTATCGATACAT
1 TGTATCGATACAG
119054 TGTATCGATACA
1 TGTATCGATACA
119066 AAAAAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.37
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:122993 original size:21 final size:21
Alignment explanation
Indices: 122964--123008 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
122954 AAGTTTTTAT
*
122964 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
122984 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
123006 TTT
1 TTT
123009 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:125246 original size:13 final size:13
Alignment explanation
Indices: 125228--125253 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
125218 ATATTTTTTG
125228 TGTATCGATACAT
1 TGTATCGATACAT
125241 TGTATCGATACAT
1 TGTATCGATACAT
125254 ATTTTGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:125264 original size:32 final size:33
Alignment explanation
Indices: 125207--125271 Score: 105
Period size: 32 Copynumber: 2.0 Consensus size: 33
125197 TACAAGCCAA
*
125207 TGTATCGATACATATTTTTTGTGTATCGATACAT
1 TGTATCGATACATA-TTTTTGTGTATCAATACAT
125241 TGTATCGATACATA-TTTTGTGTATCAATACA
1 TGTATCGATACATATTTTTGTGTATCAATACA
125272 AGTTTGGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 16 0.53
34 14 0.47
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (33 bp):
TGTATCGATACATATTTTTGTGTATCAATACAT
Found at i:125265 original size:19 final size:19
Alignment explanation
Indices: 125207--125271 Score: 61
Period size: 19 Copynumber: 3.6 Consensus size: 19
125197 TACAAGCCAA
125207 TGTATCGATACATATTTTTTG
1 TGTATCGATACATA--TTTTG
125228 TGTATCGATAC--A---T-
1 TGTATCGATACATATTTTG
125241 TGTATCGATACATATTTTG
1 TGTATCGATACATATTTTG
*
125260 TGTATCAATACA
1 TGTATCGATACA
125272 AGTTTGGCTA
Statistics
Matches: 37, Mismatches: 1, Indels: 14
0.71 0.02 0.27
Matches are distributed among these distances:
13 11 0.30
14 1 0.03
15 1 0.03
18 1 0.03
19 12 0.32
21 11 0.30
ACGTcount: A:0.29, C:0.12, G:0.14, T:0.45
Consensus pattern (19 bp):
TGTATCGATACATATTTTG
Found at i:126777 original size:80 final size:79
Alignment explanation
Indices: 126656--126968 Score: 366
Period size: 80 Copynumber: 3.9 Consensus size: 79
126646 ACCCCCTAGA
* * *
126656 GTGAAAAATCA-ATATTTTAGAAATAAAATCGAGGTTCGAGTATCCCCTTAGAAATAATGGGGTT
1 GTGAAAAATTAGATATTTT-GAAATAAAATTGAGGTTCGAGTATCCCCTTAGAAATAACGGGGTT
126720 GGAGTATCCCCGATG
65 GGAGTATCCCCGATG
*
126735 GTGAAAAATTAGATATTTTGCAAATAAAAATTG-GGTTGGAGTAT-CCCTTCAGAAATAACGGGG
1 GTGAAAAATTAGATATTTTG-AAAT-AAAATTGAGGTTCGAGTATCCCCTT-AGAAATAACGGGG
*
126798 TTAGAGTATCCCCGATG
63 TTGGAGTATCCCCGATG
* * * * ** * *
126815 GTAAAAAATTAGATATTTTGAAAAAAAAAAT-AGGATTGGAGTATCCTTTTGGAAATAATGGGGT
1 GTGAAAAATTAGATATTTTG-AAATAAAATTGAGG-TTCGAGTATCCCCTTAGAAATAACGGGGT
*
126879 TGGAGTATCCCCGATA
64 TGGAGTATCCCCGATG
* * * *
126895 GTGAACAATT-GATATTTTGGAAATGAAACTGAGGTTCGAATATCCCCTTAGAAATAACGGGGTT
1 GTGAAAAATTAGATATTTT-GAAATAAAATTGAGGTTCGAGTATCCCCTTAGAAATAACGGGGTT
126959 GGAGTATCCC
65 GGAGTATCCC
126969 TAATAGTAAA
Statistics
Matches: 199, Mismatches: 26, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
79 72 0.36
80 118 0.59
81 9 0.05
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (79 bp):
GTGAAAAATTAGATATTTTGAAATAAAATTGAGGTTCGAGTATCCCCTTAGAAATAACGGGGTTG
GAGTATCCCCGATG
Found at i:126958 original size:159 final size:160
Alignment explanation
Indices: 126706--127016 Score: 421
Period size: 159 Copynumber: 1.9 Consensus size: 160
126696 TATCCCCTTA
* *
126706 GAAATAATGGGGTTGGAGTATCCCCGATGGTGAAAAATTAGATATTTTGCAAATAAAAATTGGGT
1 GAAATAATGGGGTTGGAGTATCCCCGATAGTGAAAAATTAGATATTTTGCAAATAAAAACTGGGT
* * * * *
126771 TGGAGTATCCCTTCAGAAATAACGGGGTTAGAGTATCCCCGATGGTAAAAAATTAGATATTTTGA
66 TCGAATATCCCTTCAGAAATAACGGGGTTAGAGTATCCCCAATAGTAAAAAAATAGATATTTTGA
*
126836 AAAAAAAAATAGGATTGGAGTATCCTTTTG
131 AAAAAAAAACAGGATTGGAGTATCCTTTTG
* * *
126866 GAAATAATGGGGTTGGAGTATCCCCGATAGTGAACAATT-GATATTTTGGAAAT-GAAACTGAGG
1 GAAATAATGGGGTTGGAGTATCCCCGATAGTGAAAAATTAGATATTTTGCAAATAAAAACTG-GG
* * *
126929 TTCGAATATCCCCTT-AGAAATAACGGGGTTGGAGTATCCCTAATAGTAAAAAAATCGATATTTT
65 TTCGAATAT-CCCTTCAGAAATAACGGGGTTAGAGTATCCCCAATAGTAAAAAAATAGATATTTT
* ** *
126993 GGAAATTAAAACGGGATTGGAGTA
129 GAAAAAAAAAACAGGATTGGAGTA
127017 GCCCTTTTTG
Statistics
Matches: 131, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
158 5 0.04
159 84 0.64
160 42 0.32
ACGTcount: A:0.37, C:0.11, G:0.24, T:0.29
Consensus pattern (160 bp):
GAAATAATGGGGTTGGAGTATCCCCGATAGTGAAAAATTAGATATTTTGCAAATAAAAACTGGGT
TCGAATATCCCTTCAGAAATAACGGGGTTAGAGTATCCCCAATAGTAAAAAAATAGATATTTTGA
AAAAAAAAACAGGATTGGAGTATCCTTTTG
Found at i:129507 original size:20 final size:20
Alignment explanation
Indices: 129482--129522 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
129472 AATTGTAAGC
*
129482 ATGTATCGATATATTTACTT
1 ATGTATCGATACATTTACTT
*
129502 ATGTATCGATACATTTTCTT
1 ATGTATCGATACATTTACTT
129522 A
1 A
129523 ATAGAATGCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.12, G:0.10, T:0.49
Consensus pattern (20 bp):
ATGTATCGATACATTTACTT
Found at i:131677 original size:77 final size:79
Alignment explanation
Indices: 131561--131713 Score: 229
Period size: 78 Copynumber: 2.0 Consensus size: 79
131551 TCCGACCTTG
* * * * **
131561 TTCTTTATAAAATAATTAAATTTTCTCTTTGTTCTTAAATA-TATCATAATTCTCGACTTCAGGG
1 TTCTTCATAAAATAATCAAATTTTCCCTTTGTTCCTAAATATTATCATAATTCTCGACTTCAAAG
131625 AAACTCCAACCTCC
66 AAACTCCAACCTCC
*
131639 TTCTTCATAAAA-AATCAAATTTTCCCTTTGTTCCTAAATATTTTCATAATTCTCGACTTCAAAG
1 TTCTTCATAAAATAATCAAATTTTCCCTTTGTTCCTAAATATTATCATAATTCTCGACTTCAAAG
131703 AAACTCCAACC
66 AAACTCCAACC
131714 CTACTGCTCC
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
77 25 0.37
78 42 0.63
ACGTcount: A:0.33, C:0.22, G:0.05, T:0.39
Consensus pattern (79 bp):
TTCTTCATAAAATAATCAAATTTTCCCTTTGTTCCTAAATATTATCATAATTCTCGACTTCAAAG
AAACTCCAACCTCC
Found at i:131819 original size:182 final size:184
Alignment explanation
Indices: 131457--131794 Score: 425
Period size: 182 Copynumber: 1.8 Consensus size: 184
131447 CTAGCCCCGC
* * **
131457 TCTTCATAAAAAAATCAAATTTTCTCTTTGTTCTTAAATATTTTCATAATTCTCAACTTCAGGGA
1 TCTTCATAAAAAAATCAAATTTTCCCTTTGTTCCTAAATATTTTCATAATTCTCAACTTCAAAGA
* * * * ** * *
131522 AACTATAACCCTTTACTCCGAGCGAATACTCCGACCTTGTTCTTTATAAAATAATTAAATTTTCT
66 AACTACAACCCTCTACTCCGAGCGAACACTCCAACCCCGTTCTTCATAAAATAATCAAATTTTCT
131587 CTTTGTTCTTAAATATATCATAATTCTCGACTTCAGGGAAACTCCAACCTC-CT
131 CTTTGTTCTTAAATATATCATAATTCTCGACTTCAGGGAAACTCCAACCTCACT
*
131640 TCTTCAT-AAAAAATCAAATTTTCCCTTTGTTCCTAAATATTTTCATAATTCTCGACTTCAAAGA
1 TCTTCATAAAAAAATCAAATTTTCCCTTTGTTCCTAAATATTTTCATAATTCTCAACTTCAAAGA
* * * * * *
131704 AACTCCAACCCTACTGCTCCGAG-GGACACTCTAACCCCGTTCTTCACTAAAA-ACCTCAAGTTT
66 AACTACAACCCT-CTACTCCGAGCGAACACTCCAACCCCGTTCTTCA-TAAAATA-ATCAAATTT
*
131767 TCTCTTTGTTC-TAAATACTTTCATAATT
128 TCTCTTTGTTCTTAAATA-TATCATAATT
131795 TTATCTTCGA
Statistics
Matches: 131, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
182 85 0.65
183 46 0.35
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (184 bp):
TCTTCATAAAAAAATCAAATTTTCCCTTTGTTCCTAAATATTTTCATAATTCTCAACTTCAAAGA
AACTACAACCCTCTACTCCGAGCGAACACTCCAACCCCGTTCTTCATAAAATAATCAAATTTTCT
CTTTGTTCTTAAATATATCATAATTCTCGACTTCAGGGAAACTCCAACCTCACT
Found at i:133712 original size:165 final size:165
Alignment explanation
Indices: 133375--134081 Score: 779
Period size: 166 Copynumber: 4.3 Consensus size: 165
133365 AAAATTTTCT
* * *
133375 AAATATTATCATTTAA-TCACTATTAAATTAATTTTTAAAAATTCATTCAGTTTCATGAGTTTTT
1 AAATATTATTATTTAATTTA-TATTAAATTAATTTTTAAAAATTCATTCATTTTCATGAGTTTTT
* * ** * * *
133439 CACTTTTTTCTTAAAATTT-TCCTATTTTTAAAATACGAAGTTTTTTACTCCATAAATATTTTCG
65 CA-TTTTTTCTTAAAATTTCTTCTGTTTCGAAAA-ACGAAATTTTCTACTCCATAAATATTTTTG
* * * *
133503 GAGGGATTTTTCTTGGATTTTAATTTTTAAAATTCATA
128 GAGAGATTTTTCTTAGTTTTTAATTTTTAAAATTCATC
* *
133541 AAATATTATTATTTAATTTATATTAAATCAATTTTAAAAAATTCATTCATTTTCATGAGTTTTTT
1 AAATATTATTATTTAATTTATATTAAATTAATTTTTAAAAATTCATTCATTTTCATGAG-TTTTT
* * * *
133606 CATTTTTTCTTGAAA-TTCTTCTGTTTCGAAAAACTAAATTTTCTACTCCCTAAATGTTTTTGGA
65 CATTTTTTCTTAAAATTTCTTCTGTTTCGAAAAACGAAATTTTCTACTCCATAAATATTTTTGGA
*
133670 GAGTTTTTTCTTAGTTTTTAATTTTTAAAATTCATC
130 GAGATTTTTCTTAGTTTTTAATTTTTAAAATTCATC
* * *
133706 AAATATTATTATTTAATTCATATTAAATAAATTTTTAAAAATTCATTCATTTTCATTCA-TTTTT
1 AAATATTATTATTTAATTTATATTAAATTAATTTTTAAAAATTCATTCATTTTCA-TGAGTTTTT
* * * *
133770 CATTTTTTGCTTGAAATTTCTT-TGTTTCTGAAATACGAAGTTTTCTACTTCATAAATATTTTTG
65 CATTTTTT-CTTAAAATTTCTTCTGTTTC-GAAAAACGAAATTTTCTACTCCATAAATATTTTTG
* * *
133834 GAGCGATTCTTCTTGGTTTTTAATTTTTAAAATTCATC
128 GAGAGATTTTTCTTAGTTTTTAATTTTTAAAATTCATC
* * *
133872 AAATATTATTATTTAATTTGTATTAAATT-ATTTTTCAAAAATTAATTCATTTTCATAAGTTTTT
1 AAATATTATTATTTAATTTATATTAAATTAATTTTT-AAAAATTCATTCATTTTCATGAGTTTTT
* * * * * * * *
133936 TATTTTTTCTTAAAATTTCCTTAT-TTCCAAAAAATCAAAATTTTC-ATTCCATAAAT-GTTTTC
65 CATTTTTTCTTAAAATTT-CTTCTGTTTCGAAAAA-CGAAATTTTCTACTCCATAAATATTTTTG
* **
133998 GAGAAGATTTTTCTCAGTTTAAAATTTTTAAAATTCAT-
128 GAG-AGATTTTTCTTAGTTTTTAATTTTTAAAATTCATC
* * * *
134036 ATAATATTGTTATTAAACTTT-TATTAAATTAGTTTCTAAAAATTCA
1 A-AATATTATTATTTAA-TTTATATTAAATTAATTTTTAAAAATTCA
134082 ATTTATTTCA
Statistics
Matches: 463, Mismatches: 62, Indels: 33
0.83 0.11 0.06
Matches are distributed among these distances:
164 21 0.05
165 212 0.46
166 220 0.48
167 10 0.02
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.50
Consensus pattern (165 bp):
AAATATTATTATTTAATTTATATTAAATTAATTTTTAAAAATTCATTCATTTTCATGAGTTTTTC
ATTTTTTCTTAAAATTTCTTCTGTTTCGAAAAACGAAATTTTCTACTCCATAAATATTTTTGGAG
AGATTTTTCTTAGTTTTTAATTTTTAAAATTCATC
Found at i:133857 original size:331 final size:330
Alignment explanation
Indices: 133374--134081 Score: 905
Period size: 331 Copynumber: 2.1 Consensus size: 330
133364 CAAAATTTTC
* *
133374 TAAATATTATCATTTAA-TCACTATTAAATTAATTTTTAAAAATTCATTCAGTTTCATGAGTTTT
1 TAAATATTATTATTTAATTCA-TATTAAATTAATTTTTAAAAATTCATTCAGTTTCATCAGTTTT
*
133438 TCACTTTTTTCTTAAAATTTTCCTATTTTTAAAATACGAAGTTTTTTACTCCATAAATATTTTCG
65 TCACTTTTTTCTTAAAATTTTCCTATTTTTAAAATACGAAGTTTTCTACTCCATAAATATTTTCG
* *
133503 GAGGGATTTTTCTTGGATTTTAATTTTTAAAATTCATAAAATATTATTATTTAATTTATATTAAA
130 GAGCGATTCTTCTTGGATTTTAATTTTTAAAATTCATAAAATATTATTATTTAATTTATATTAAA
* * * *
133568 TCAATTTTAAAAAATTCATTCATTTTCATGAGTTTTTTCATTTTTTCTTGAAA-TT-CTTCTGTT
195 TCAATTTTAAAAAATTAATTCATTTTCATAAGTTTTTT-ATTTTTTCTTAAAATTTCCTTAT-TT
* * * * * * * **
133631 TCGAAAAA-CTAAATTTTCTACTCCCTAAATGTTTTTG-GAGAGTTTTTTCTTAGTTTTTAATTT
258 CCAAAAAATCAAAATTTTC-ACTCCATAAATGTTTTCGAGA-AGATTTTTCTCAGTTTAAAATTT
133694 TTAAAATTCA
321 TTAAAATTCA
* *
133704 TCAAATATTATTATTTAATTCATATTAAATAAATTTTTAAAAATTCATTCATTTTCATTCA-TTT
1 T-AAATATTATTATTTAATTCATATTAAATTAATTTTTAAAAATTCATTCAGTTTCA-TCAGTTT
* * * *
133768 TTCA-TTTTTTGCTTGAAA-TTT-CTTTGTTTCTGAAATACGAAGTTTTCTACTTCATAAATATT
64 TTCACTTTTTT-CTTAAAATTTTCCTAT-TTT-TAAAATACGAAGTTTTCTACTCCATAAATATT
* * * *
133830 TTTGGAGCGATTCTTCTTGGTTTTTAATTTTTAAAATTCATCAAATATTATTATTTAATTTGTAT
126 TTCGGAGCGATTCTTCTTGGATTTTAATTTTTAAAATTCATAAAATATTATTATTTAATTTATAT
* * *
133895 TAAATTATTTTTCAAAAATTAATTCATTTTCATAAGTTTTTTATTTTTTCTTAAAATTTCCTTAT
191 TAAATCAATTTTAAAAAATTAATTCATTTTCATAAGTTTTTTATTTTTTCTTAAAATTTCCTTAT
*
133960 TTCCAAAAAATCAAAATTTTCATTCCATAAATGTTTTCGAGAAGATTTTTCTCAGTTTAAAATTT
256 TTCCAAAAAATCAAAATTTTCACTCCATAAATGTTTTCGAGAAGATTTTTCTCAGTTTAAAATTT
134025 TTAAAATTCA
321 TTAAAATTCA
* * * * *
134035 TATAATATTGTTATTAAACTT-TTATTAAATTAGTTTCTAAAAATTCA
1 TA-AATATTATTATTTAA-TTCATATTAAATTAATTTTTAAAAATTCA
134082 ATTTATTTCA
Statistics
Matches: 328, Mismatches: 38, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
329 3 0.01
330 27 0.08
331 276 0.84
332 22 0.07
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (330 bp):
TAAATATTATTATTTAATTCATATTAAATTAATTTTTAAAAATTCATTCAGTTTCATCAGTTTTT
CACTTTTTTCTTAAAATTTTCCTATTTTTAAAATACGAAGTTTTCTACTCCATAAATATTTTCGG
AGCGATTCTTCTTGGATTTTAATTTTTAAAATTCATAAAATATTATTATTTAATTTATATTAAAT
CAATTTTAAAAAATTAATTCATTTTCATAAGTTTTTTATTTTTTCTTAAAATTTCCTTATTTCCA
AAAAATCAAAATTTTCACTCCATAAATGTTTTCGAGAAGATTTTTCTCAGTTTAAAATTTTTAAA
ATTCA
Found at i:149319 original size:13 final size:13
Alignment explanation
Indices: 149301--149326 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
149291 ACATACAAGA
149301 TGTATCGATACAT
1 TGTATCGATACAT
149314 TGTATCGATACAT
1 TGTATCGATACAT
149327 GACCAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:149342 original size:33 final size:32
Alignment explanation
Indices: 149281--149348 Score: 111
Period size: 33 Copynumber: 2.1 Consensus size: 32
149271 CCTTAACTGT
149281 TTGTATCGATACATACAAGATGTATCGATACA
1 TTGTATCGATACATACAAGATGTATCGATACA
149313 TTGTATCGATACATGACCAA-ATGTATCGATACA
1 TTGTATCGATACAT-A-CAAGATGTATCGATACA
149346 TTG
1 TTG
149349 GCTTGTAACG
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
32 14 0.41
33 17 0.50
34 3 0.09
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (32 bp):
TTGTATCGATACATACAAGATGTATCGATACA
Found at i:155417 original size:13 final size:13
Alignment explanation
Indices: 155399--155436 Score: 58
Period size: 13 Copynumber: 2.9 Consensus size: 13
155389 AAAACTCAGA
*
155399 TGTATCGATATAT
1 TGTATCGATATAG
*
155412 TGTATCGATACAG
1 TGTATCGATATAG
155425 TGTATCGATATA
1 TGTATCGATATA
155437 AAGGGTTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.32, C:0.11, G:0.18, T:0.39
Consensus pattern (13 bp):
TGTATCGATATAG
Found at i:157373 original size:27 final size:29
Alignment explanation
Indices: 157319--157387 Score: 115
Period size: 27 Copynumber: 2.4 Consensus size: 29
157309 AAATTGTTTT
157319 ATTAAGGGGGAGAATTTTTTTTATATTTG
1 ATTAAGGGGGAGAATTTTTTTTATATTTG
*
157348 ATTAAGGGCGAGAA-TTTTTTT-TATTTG
1 ATTAAGGGGGAGAATTTTTTTTATATTTG
157375 ATTAAGGGGGAGA
1 ATTAAGGGGGAGA
157388 GAAAAGGAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
27 18 0.47
28 7 0.18
29 13 0.34
ACGTcount: A:0.29, C:0.01, G:0.28, T:0.42
Consensus pattern (29 bp):
ATTAAGGGGGAGAATTTTTTTTATATTTG
Found at i:158072 original size:13 final size:13
Alignment explanation
Indices: 158054--158079 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
158044 ACATACAAGA
158054 TGTATCGATACAT
1 TGTATCGATACAT
158067 TGTATCGATACAT
1 TGTATCGATACAT
158080 GACCAAATGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:158075 original size:32 final size:33
Alignment explanation
Indices: 158034--158101 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
158024 CCTTAACCGT
*
158034 TTGTATCGATACAT-A-CAAGATGTATCGATACA
1 TTGTATCGATACATGACCAA-ATGTATCAATACA
158066 TTGTATCGATACATGACCAAATGTATCAATACA
1 TTGTATCGATACATGACCAAATGTATCAATACA
158099 TTG
1 TTG
158102 GCTTGTAACG
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
32 14 0.42
33 16 0.48
34 3 0.09
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACATGACCAAATGTATCAATACA
Found at i:159778 original size:72 final size:72
Alignment explanation
Indices: 159596--159801 Score: 210
Period size: 69 Copynumber: 2.9 Consensus size: 72
159586 GTAAAATGCC
* *
159596 TTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATCTACCTTAATCCACAAAGAGT
1 TTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATATACCTCAATCCACAAAGAG-
*
159661 TAGATACT
65 TAGAAACT
* * ** *
159669 TTTTCTTA-CTA-C--AAAGCCCATACAAACTAGTAACACCTATATACCTCAGCCTCCA-AAA-A
1 TTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATATACCTCA--ATCCACAAAGA
159728 -TAGAAAGCT
64 GTAGAAA-CT
* * * * *
159737 TTTTCTTACCTACCATAAAGCCCACACAAGCTGGTGGCACCTATTTACCTTAGTGCACAAAGAGT
1 TTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATATACCTCAATCCACAAAGAGT
159802 TGGACTCCTT
Statistics
Matches: 106, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
67 5 0.05
68 10 0.09
69 34 0.32
70 7 0.07
71 8 0.08
72 33 0.31
73 9 0.08
ACGTcount: A:0.34, C:0.28, G:0.11, T:0.27
Consensus pattern (72 bp):
TTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATATACCTCAATCCACAAAGAGT
AGAAACT
Found at i:159868 original size:141 final size:139
Alignment explanation
Indices: 159595--159918 Score: 345
Period size: 141 Copynumber: 2.3 Consensus size: 139
159585 AGTAAAATGC
*
159595 CTTTTCTTACCTACCATAAAGCCCACACAAACTGGTGGCACCTATCTACCTTAATCCACAAAGAG
1 CTTTTCTTACCTACCATAAAGCCCACACAAGCTGGTGGCACCTATCTACCTTAATCCACAAAGAG
* * *
159660 TTAGATACTTTTTCTTACTACAAAGCCCATACAAACTAGTAACACCTATATACCTCAGCCTCCAA
66 TTAGATACTTTTTCTTACTACAAAGCCCACACAAACTAGTAACACC-ATATA-CTCAGCCACAAA
159725 AAATAGAAAGC-T
129 AAAT-GAAA-CTT
* * *
159737 -TTTTCTTACCTACCATAAAGCCCACACAAGCTGGTGGCACCTATTTACCTTAGTGCACAAAGAG
1 CTTTTCTTACCTACCATAAAGCCCACACAAGCTGGTGGCACCTATCTACCTTAATCCACAAAGAG
* * * * ** * **
159801 TTGGACTCCTTTTTTTACTTACTTCAAAGCCTACACAAGTTGGTGGCACC-TAT-CT-AGTCCAC
66 TTAGA-TAC--TTTTT-CTTACTACAAAGCCCACACAAACTAGTAACACCATATACTCAG-CCAC
* *
159863 AAAAAATTATACTT
126 AAAAAATGAAACTT
*
159877 CTTTTCTTACCTACC-TCAAAGCCCACACAAGCTTGTGGCACC
1 CTTTTCTTACCTACCAT-AAAGCCCACACAAGCTGGTGGCACC
159919 ATGTTAATCT
Statistics
Matches: 155, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
139 1 0.01
140 6 0.04
141 113 0.73
142 2 0.01
143 3 0.02
144 5 0.03
145 25 0.16
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.28
Consensus pattern (139 bp):
CTTTTCTTACCTACCATAAAGCCCACACAAGCTGGTGGCACCTATCTACCTTAATCCACAAAGAG
TTAGATACTTTTTCTTACTACAAAGCCCACACAAACTAGTAACACCATATACTCAGCCACAAAAA
ATGAAACTT
Found at i:159905 original size:68 final size:71
Alignment explanation
Indices: 159594--159918 Score: 199
Period size: 68 Copynumber: 4.6 Consensus size: 71
159584 GAGTAAAATG
** * *
159594 CCTTTTCTTACCTACCAT-AAAGCCCACACAAACTGGTGGCACCTATCTACCTTAATCCACAAAG
1 CCTTTTCTTACCTACC-TCAAAGCCCACACAAGTTGGTGGCACCTAT-TA-CTTAGTCCACAAAA
*
159658 AGTTAGA-T
63 AATTAGACT
* * ** * ** * * *
159666 ACTTTTTCTTA-CTA---CAAAGCCCATACAAACTAGTAACACCTATATACCTCAG-CCTCCAAA
1 -CCTTTTCTTACCTACCTCAAAGCCCACACAAGTTGGTGGCACCTAT-TA-CTTAGTCCACAAAA
**
159726 AA-TAGAAAG
63 AATTAG-ACT
* * * *
159735 CTTTTTCTTACCTACCAT-AAAGCCCACACAAGCTGGTGGCACCTATTTACCTTAGTGCACAAAG
1 CCTTTTCTTACCTACC-TCAAAGCCCACACAAGTTGGTGGCACCTA-TTA-CTTAGTCCACAAAA
* *
159799 AGTTGGACT
63 AATTAGACT
* * * *
159808 CCTTTTTTTACTTACTTCAAAGCCTACACAAGTTGGTGGCACCTA-T-C-TAGTCCACAAAAAAT
1 CCTTTTCTTACCTACCTCAAAGCCCACACAAGTTGGTGGCACCTATTACTTAGTCCACAAAAAAT
*
159870 TATACT
66 TAGACT
*
159876 TCTTTTCTTACCTACCTCAAAGCCCACACAAGCTT-GTGGCACC
1 CCTTTTCTTACCTACCTCAAAGCCCACACAAG-TTGGTGGCACC
159919 ATGTTAATCT
Statistics
Matches: 196, Mismatches: 43, Indels: 31
0.73 0.16 0.11
Matches are distributed among these distances:
67 3 0.02
68 68 0.35
69 36 0.18
71 1 0.01
72 33 0.17
73 53 0.27
74 2 0.01
ACGTcount: A:0.31, C:0.29, G:0.11, T:0.28
Consensus pattern (71 bp):
CCTTTTCTTACCTACCTCAAAGCCCACACAAGTTGGTGGCACCTATTACTTAGTCCACAAAAAAT
TAGACT
Done.