Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold462
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1234098
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 6 of 8
Found at i:807505 original size:13 final size:13
Alignment explanation
Indices: 807487--807511 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
807477 ACATTTGGTC
807487 ATGTATCGATACA
1 ATGTATCGATACA
807500 ATGTATCGATAC
1 ATGTATCGATAC
807512 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:809549 original size:20 final size:20
Alignment explanation
Indices: 809501--809565 Score: 94
Period size: 20 Copynumber: 3.1 Consensus size: 20
809491 GCTGTTAGTG
* *
809501 TGGGGGCTGCCCGTTGCGACC
1 TGGGGG-TGCCGGTCGCGACC
809522 TAGGGGGTGCCGGTCGCGACC
1 T-GGGGGTGCCGGTCGCGACC
809543 TGGGGGTGCCGGTCGCGACC
1 TGGGGGTGCCGGTCGCGACC
809563 TGG
1 TGG
809566 TGAGTGCCTA
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
20 22 0.54
21 14 0.34
22 5 0.12
ACGTcount: A:0.06, C:0.29, G:0.48, T:0.17
Consensus pattern (20 bp):
TGGGGGTGCCGGTCGCGACC
Found at i:816904 original size:19 final size:20
Alignment explanation
Indices: 816859--816910 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
816849 TTACAAGCCA
*
816859 ATGTATCGATACATTTTGGG
1 ATGTATCGATACATCTTGGG
*
816879 ATGTATCGATACATCTTGTG
1 ATGTATCGATACATCTTGGG
816899 -TGTATCGATACA
1 ATGTATCGATACA
816911 AACAGTTAAG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 12 0.40
20 18 0.60
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.38
Consensus pattern (20 bp):
ATGTATCGATACATCTTGGG
Found at i:817025 original size:20 final size:20
Alignment explanation
Indices: 817002--817042 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
816992 TTGTGCATTA
* *
817002 TGTATTGATACATTTGAAGG
1 TGTATCGATACATTTCAAGG
817022 TGTATCGATACATTTCAAGG
1 TGTATCGATACATTTCAAGG
817042 T
1 T
817043 TTTGACCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (20 bp):
TGTATCGATACATTTCAAGG
Found at i:820371 original size:215 final size:215
Alignment explanation
Indices: 819981--820410 Score: 523
Period size: 215 Copynumber: 2.0 Consensus size: 215
819971 TAACATTTGC
* * *
819981 CCTTATGAGAAGACTATGTTTGTAGTGCCTAATCCTAACAAGAATGGGGATTAGTGTGACTATTC
1 CCTTATGAGAAGACTATGTTTGTAGTGCCTAATCCGAACAAAAATGGGGATTAGTATGACTATTC
* * * * **
820046 ATTGTTGCCCTATTTAAGAGGCAGACTTCGATTTTATCTATAACAGTGGAAAAAAAGCTTTTCTT
66 ATTGTTGCCCTATTTAAGAGGCAAACTTCGATTCTATCAAAAACAGCAGAAAAAAAGCTTTTCTT
** * * * *
820111 GTGACACCAAAGCATCAGTGTCATTCAACCTAAAGAGGAGAATGTGTTTTAGGTTCCTAATCGTG
131 ACGACACCAAAGCATCAATGTCATTCAACCTAAAGAGGAGAATGTGTTTTAGGTTCCCAATCCTA
*
820176 AAAATAATGGAGACTGTTAT
196 AAAAGAATGGAGACTGTTAT
*
820196 CCTTATGAGAATACTATG-TT-TACGATGCCTAATCTCGAA-AAAAATGGGGATTAGTATGACTA
1 CCTTATGAGAAGACTATGTTTGTA-G-TGCCTAATC-CGAACAAAAATGGGGATTAGTATGACTA
** * * **
820258 TTCA-TGTTTGTTCTATTTAATAGGCAAACTTTGATTCTATCAAAAATGGCAGAAAGAAAAGCTT
63 TTCATTG-TTGCCCTATTTAAGAGGCAAACTTCGATTCTATCAAAAACAGCAGAAA-AAAAGCTT
* *
820322 TT-TTACGACACCAAAGCATCAATGTCATGT-ATCCTAATGAAGG-GAATGTGTTTTAGGTTCCC
126 TTCTTACGACACCAAAGCATCAATGTCAT-TCAACCTAAAG-AGGAGAATGTGTTTTAGGTTCCC
820384 AATCCTAAAAAGAATGGAGACTGTTAT
189 AATCCTAAAAAGAATGGAGACTGTTAT
820411 GAGCATCGAT
Statistics
Matches: 183, Mismatches: 25, Indels: 14
0.82 0.11 0.06
Matches are distributed among these distances:
213 2 0.01
214 5 0.03
215 159 0.87
216 17 0.09
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (215 bp):
CCTTATGAGAAGACTATGTTTGTAGTGCCTAATCCGAACAAAAATGGGGATTAGTATGACTATTC
ATTGTTGCCCTATTTAAGAGGCAAACTTCGATTCTATCAAAAACAGCAGAAAAAAAGCTTTTCTT
ACGACACCAAAGCATCAATGTCATTCAACCTAAAGAGGAGAATGTGTTTTAGGTTCCCAATCCTA
AAAAGAATGGAGACTGTTAT
Found at i:820500 original size:158 final size:158
Alignment explanation
Indices: 820334--821971 Score: 682
Period size: 158 Copynumber: 10.3 Consensus size: 158
820324 TTACGACACC
* * *
820334 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAAT
1 AAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTTAGGTGCCTAATCCTAAAAAGAAT
* *
820399 GGAGACT-GTTATGAGCATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAAT
65 GGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAAT
* * *
820463 AGGGCAAAG-AAAGATTTTCACGCAAAAGA
130 AGGG-AAAGAAAAGCTTTTCATGCAAAACA
* * * * * *
820492 AAACCATCAATATCATTTATCTTAAAGAGGAGAATGTGTTTATA-GTGCCTAATCAC-ATAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTT-TAGGTGCCTAATC-CTAAAAAGA
* * ** * * * * * * *
820555 ATGAAGA-TCGTTACCAGAATCCATGTTTGTCTCACTTAAGGCATGAACTTAGACTTTACA--AA
63 ATGGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AGGAA
* * ** * * *
820617 AATTGGCGAGAGGGAAGCCTTTCTTGCGAAACA
127 AATAGG-GAAAGAAAAGCTTTTCATGCAAAACA
* * * ** ** * * * * *
820650 AAAGCATTAACATCGTACATCCTTTTGAGAAGACTATG-TTTATGGTGCCTAGTCCTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTTA-GGTGCCTAATCCTAAAAAGAA
* * ** ** * * * * ***
820714 TTGG-GATTAG-TACGACTATTTATGTTTGTCTTATTGAAGAGATAAACTCTGATTCTATCAAAA
64 -TGGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAA
* ** * * * * * *
820777 ACGATAGAAAGAAAAGCTTTCCTTACGACACC
128 A-TAGGGAAAGAAAAGCTTTTCATGCAAAACA
* * * * * * *
820809 AAAGCATTAATGTCATGCATCCTAATGAAGGGAAAGTGTTTTAGGTTCCCAATCCTAAAAATAAT
1 AAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTTAGGTGCCTAATCCTAAAAAGAAT
* * * *
820874 GGAGACT-GTTACGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
65 GGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAAT
* * *
820938 AGAGCAAAGAAAAGATTTTCATGCAAAAGA
130 AG-GGAAAGAAAAGCTTTTCATGCAAAACA
** * * * * *
820968 AAATAATTAATATCATTTATCCTATTAAGGAGAATGTGTTTATA-GTGCCTAATCAC-AAAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTT-TAGGTGCCTAATC-CTAAAAAGA
* * * * * ** * *
821031 ATGAAGA-TCA-TTACT-AGAATCCATGTTTGTCTTGTTTGAGGCACGAACTTAGACTTTACA--
63 ATGGAGACT-AGTTA-TGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AGG
* * * * *
821091 AAAATTGGTGAGATG-AAAGCCTTTCTTGCAAAACC
125 AAAATAGG-GA-AAGAAAAGCTTTTCATGCAAAACA
** * * * ** ** * * * *
821126 AAAGCATCAACGTCGTGCATCTTTTTGAGAAAACT-TTTTTTATGGTGCCTACTCCTGAGAAGAA
1 AAAGCATCAATATCATGTATCCTAATGAGGGAA-TGTGTTTTA-GGTGCCTAATCCTAAAAAGAA
* ** * * * * * ***
821190 TTGG-GATTAG-TATGACTAT-AATGTTTGTCTTATGTAAGAGATAAACTCTGATTCTATCAAAA
64 -TGGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAA
* * * * * *
821252 AT-GGTAGAAAGAAAAGCTTTCCTTACGACACC
128 ATAGG--GAAAGAAAAGCTTTTCATGCAAAACA
* ** * * *
821284 AAAGCATCAATGTCATACATCCTAATAAAGGGAATGTGTTTTAGGT-TCTCAATCCTAAAAATAA
1 AAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTTAGGTGCCT-AATCCTAAAAAGAA
* * * *
821348 TGGAGACT-GTTATGAGAATCGACGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
64 TGGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAA
* * ***
821412 TAGAGAAGAGAACAG-TTTTCCAT-CAATGGA
129 TAGGGAA-AGAAAAGCTTTT-CATGCAAAACA
* * ** * *
821442 AAATCATCAACATTTTTTATCCTAATGAGGAGAATGTGTTTATA-GTGCCTAATCAC-AAAATGA
1 AAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTT-TAGGTGCCTAATC-CTAAAAAGA
* * * * * * * *
821505 ATGAAGA-TCA-TTACT-AGAATCCATGTTTGTCTTATTTGAGGCATCAACTTAGACTTCACA--
63 ATGGAGACT-AGTTA-TGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AGG
* * * * *
821565 AAAATTGGTTGGAA-AAAAGCCTTTCTTGCAAAACC
125 AAAATAGG--GAAAGAAAAGCTTTTCATGCAAAACA
** * * * *
821600 AAAGCATCAATATTGTGTATCCTTATGAGAAGACTTTGTTTGT-GGTGCCTAATCCTAAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTT-TAGGTGCCTAATCCTAAAAAGAA
* * * * * * * ** * **
821664 TGGGGATTAG-TATTAGTATTC-ATGTTTCTCATATTTAAGAGACCAACTTTGATTCT-ATCAAA
64 TGGAGACTAGTTATGAG-AATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAA
* * * *
821726 A-ACGGAGAAAAGAAAAGCTTTTCTTGCGAAGCC
128 ATA-GG-G-AAAGAAAAGCTTTTCATGCAAAACA
** * * * * * *
821759 AAAGCATCAATGCCATGTAACCCAATGAAGGGAATGTGTTTTTGGTTCAC-AATCTTGAAAAGAA
1 AAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTTAGGTGC-CTAATCCTAAAAAGAA
* * * * *
821823 TGGAGACT-GTTACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAA
64 TGGAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAA
* *
821887 TAGGGCAAAGAAAAGATTTTCATGCAAAAGA
129 TAGGG-AAAGAAAAGCTTTTCATGCAAAACA
* * *
821918 AAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA-GTGCCTAATC
1 AAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTT-TAGGTGCCTAATC
821972 ACAAAATGAA
Statistics
Matches: 1061, Mismatches: 334, Indels: 169
0.68 0.21 0.11
Matches are distributed among these distances:
156 5 0.00
157 80 0.08
158 511 0.48
159 442 0.42
160 22 0.02
161 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
AAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTTAGGTGCCTAATCCTAAAAAGAATG
GAGACTAGTTATGAGAATCGATGTTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATA
GGGAAAGAAAAGCTTTTCATGCAAAACA
Found at i:821234 original size:475 final size:476
Alignment explanation
Indices: 820194--822008 Score: 2495
Period size: 475 Copynumber: 3.8 Consensus size: 476
820184 GGAGACTGTT
* * * * * * *
820194 ATCCTTATGAGAATACTATGTTTACGATGCCTAAT-CTCGAAAAAAATGGGGATTAGTATGACTA
1 ATCCTTTTGAGAAGACTTTGTTTATGGTGCCTAATCCT-GAAAAGAATTGGGATTAGTATGACTA
* * * * *
820258 TTCATGTTTGT-TCTATTTAATAGGCAAACTTTGATTCTATCAAAAATGGCAGAAAGAAAAGCTT
65 TTCATGTTTGTCT-TATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTAGAAAGAAAAGCTT
* *
820322 T-TTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAA
129 TCCTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAA
* *
820386 TCCTAAAAAGAATGGAGACTGTTATGAGCATCGATGCTTGTCTTATTTAAGGGATAAACTTTGAT
194 TCCTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGAT
* * * *
820451 TTTAAGGAAAATAGGGCAAAG-AAAGATTTTCACGCAAAAGAAAACCATCAATATCATTTATCTT
259 TTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
820515 A-AAGAGGAGAATGTGTTTATAGTGCCTAATCACATAATGAATGAAGATCGTTACCAGAATCCAT
324 ATTA-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * * * *
820579 GTTTGTCTCACTTAAGGCATGAACTTAGACTTTACAAAAATTGGCGAGAGGGAAGCCTTTCTTGC
388 GTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGC
* * * *
820644 GAAACAAAAGCATTAACATCGTAC
453 AAAACCAAAGCATCAACATCGTGC
* * *
820668 ATCCTTTTGAGAAGACTATGTTTATGGTGCCTAGTCCTGAAAAGAATTGGGATTAGTACGACTAT
1 ATCCTTTTGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTAT
* * * *
820733 TTATGTTTGTCTTATTGAAGAGATAAACTCTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTC
66 TCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTC
* *
820798 CTTACGACACCAAAGCATTAATGTCATGCATCCTAATGAAGGGAAAGTGTTTTAGGTTCCCAATC
131 CTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATC
* * *
820863 CTAAAAATAATGGAGACTGTTACGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
196 CTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTT
* *
820928 TAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATAATTAATATCATTTATCCTAT
261 TAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAT
820993 TAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
326 TAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
* *
821058 TGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGATGAAAGCCTTTCTTGCAAA
391 TGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAA
*
821123 ACCAAAGCATCAACGTCGTGC
456 ACCAAAGCATCAACATCGTGC
* * * * *
821144 ATCTTTTTGAGAAAACTTTTTTTATGGTGCCTACTCCTGAGAAGAATTGGGATTAGTATGACTA-
1 ATCCTTTTGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTAT
* * * *
821208 TAATGTTTGTCTTATGTAAGAGATAAACTCTGATTCTATCAAAAATGGTAGAAAGAAAAGCTTTC
66 TCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTC
* * *
821273 CTTACGACACCAAAGCATCAATGTCATACATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATC
131 CTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATC
* * * * *
821338 CTAAAAATAATGGAGACTGTTATGAGAATCGACGCTTATCTTATTTAAGGGATGAACTTTGATTT
196 CTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTT
* ** * **
821403 TAAGGAAAATAGAG-AAGAGAACAG-TTTTCCAT-CAATGGAAAATCATCAACATTTTTTATCCT
261 TAAGGAAAATAGAGCAA-AGAAAAGATTTT-CATGCAAAAGAAAATCATCAATATCATTTATCCT
* *
821465 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
324 ATTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
821530 TTTGTCTTATTTGAGGCATC-AACTTAGACTTCACAAAAATTGGTTG-GAAAAAAGCCTTTCTTG
389 TTTGTCTTATTTGAGGCA-CGAACTTAGACTTTACAAAAATTGG-TGAGAAGAAAGCCTTTCTTG
* * *
821593 CAAAACCAAAGCATCAATATTGTGT
452 CAAAACCAAAGCATCAACATCGTGC
* * * * * *
821618 ATCCTTATGAGAAGACTTTGTTTGTGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATTAGTAT
1 ATCCTTTTGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTAT
* * * *
821683 TCATGTTTCTCATATTTAAGAGACCAACTTTGATTCTATCAAAAACGG-AGAAAAGAAAAGCTTT
66 TCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTAG-AAAGAAAAGCTTT
* * * * * * * *
821747 TCTTGCGA-AGCCAAAGCATCAATGCCATGTAACCCAATGAAGGGAATGTGTTTTTGGTTCACAA
130 CCTTACGACA-CCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAA
* * * * *
821811 TCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAAT
194 TCCTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGAT
*
821876 TTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
259 TTTAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
*
821941 ATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
324 ATTAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
822006 TTT
389 TTT
822009 ATGGTGCCTA
Statistics
Matches: 1193, Mismatches: 133, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
474 330 0.28
475 535 0.45
476 327 0.27
477 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (476 bp):
ATCCTTTTGAGAAGACTTTGTTTATGGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTAT
TCATGTTTGTCTTATTTAAGAGACAAACTCTGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTC
CTTACGACACCAAAGCATCAATGTCATGCATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATC
CTAAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTT
TAAGGAAAATAGAGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAT
TAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT
TGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGCAAA
ACCAAAGCATCAACATCGTGC
Found at i:822321 original size:370 final size:368
Alignment explanation
Indices: 821636--822377 Score: 1049
Period size: 370 Copynumber: 2.0 Consensus size: 368
821626 GAGAAGACTT
* * * * *
821636 TGTTTGTGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATTAGTATTCATGTTTCTCATATTTA
1 TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTAATGTTTCTCATAATTA
* * * *
821701 AGAGACCAACTTTGATTCTATCAAAAACGGAGAAAAGAAAAGCTTTTCTTGCGAAGCCAAAGCAT
66 AAAGACAAACTTTGATTCTATCAAAAACGGAGAAAAAAAAAGCTTTTCCTGCGAAGCCAAAGCAT
* * * * *
821766 CAATGCCATGTAACCCAATGAAGGGAATGTGTTTTTGGTTCACAATCTTGAAAAGAATGGAGACT
131 CAATGCCATGTAACCCAATGAAAGAAATATGTTTTAGGTTCACAATCCTGAAAAGAATGGAGACT
* *
821831 GTTACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAGGGCAAA
196 GTCACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTCTAAGGAAAATAGGGCAAA
* ** * * *
821896 GAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTAT
261 GAAAAGAGTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGGTTAG
* *
821961 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCA
326 AATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCA
*
822004 TGTTTATGGTGCCTAATCCTTAAAAGAATAGGGATTAGTATGAGTATTAATGTTTCTCATAATTA
1 TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTAATGTTTCTCATAATTA
* * *
822069 AAAGACAAACTTTGATTCTATCAAAAATAGTG-GAAAAAAAAAAGCTTTTCCTGTGATA-TCAAA
66 AAAGACAAACTTTGATTCTATCAAAAA-CG-GAG-AAAAAAAAAGCTTTTCCTGCGA-AGCCAAA
* * * *
822132 GCATCAATGTCATGTAA-CCTATAGAAAGAAATATGTTTTAGGTTCCCAATCCTGAAAATAATGG
127 GCATCAATGCCATGTAACCCAAT-GAAAGAAATATGTTTTAGGTTCACAATCCTGAAAAGAATGG
* * ** * * *
822196 AGACTGTCACGAGAATCGTTGCTTGTCTTATTTGTGGGATTAACTTTGATTCTAAGGAAAATAGG
191 AGACTGTCACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTCTAAGGAAAATAGG
*
822261 GCAAAGAAAAGAGTTTCACACAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
256 GCAAAGAAAAGAGTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTG
*
822326 GTTAGAATGCCTAATCACATAATGAATGAAGACCATTACTAGAATCCA
321 GTTAGAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCA
822374 TGTT
1 TGTT
822378 GTCTCATTTA
Statistics
Matches: 328, Mismatches: 41, Indels: 8
0.87 0.11 0.02
Matches are distributed among these distances:
368 84 0.26
369 6 0.02
370 237 0.72
371 1 0.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (368 bp):
TGTTTATGGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTAATGTTTCTCATAATTA
AAAGACAAACTTTGATTCTATCAAAAACGGAGAAAAAAAAAGCTTTTCCTGCGAAGCCAAAGCAT
CAATGCCATGTAACCCAATGAAAGAAATATGTTTTAGGTTCACAATCCTGAAAAGAATGGAGACT
GTCACGAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTCTAAGGAAAATAGGGCAAA
GAAAAGAGTTTCACACAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGGTTAG
AATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCA
Found at i:822644 original size:159 final size:157
Alignment explanation
Indices: 822440--823197 Score: 438
Period size: 159 Copynumber: 4.8 Consensus size: 157
822430 CTTTCTTGCA
* * * ** * * * *
822440 AAACCAAAGCGTCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATA-GTGCCTAGTCCAGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATAGGTGCCTAATCCAGAA
* **
822504 AAGAATCGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGATAAACTCCGATTCTATCA
65 AAGAATGGAGATTAGTATGAC-ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
* *
822569 AAAACGGTAGAAAGAAAAGCTTTCCTTATG
129 AAAATGGCAGAAA-AAAAGCTTTCCTTATG
* * * * * *
822599 ACACCAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTT-TAGGTTCCCAATCTTA-A
1 AAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATAGGTGCCTAATC-CAGA
* * * * * *
822662 AAAGAATGGAGACT-GTTATGAGCA-TCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTA
64 AAAGAATGGAGATTAG-TATGA-CATTC-ATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTA
** * *
822725 AGAAAAATAAGGCA-AAAAATAGATTTCC--ATG
126 TCAAAAAT--GGCAGAAAAAAAGCTTTCCTTATG
** * * * *
822756 CAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA-GTGCCTAAT-CAT
1 --AAACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATAGGTGCCTAATCCAG
* * * * * ** * * *
822819 AAAATGAATGAAGATCATTACTAGA-ATCCATGTCTGTCTCGTTTGAG-GAAAGAACTTGGACTT
63 AAAA-GAATGGAGATTAGTA-T-GACATTCATGTTTGTCTTATTTAAGAGATA-AACTTTGA-TT
* * * *
822882 -TA-CAAAAATTGGTAGGAAAAATGCCTTT-CTTGTG
123 CTATCAAAAA-TGGCAGAAAAAAAG-CTTTCCTTATG
* * ** * * * **
822916 AAACCAAAACATTAATATCGCGTATCCTAATGAGAAGACTATGTTTA-AGGTGCCTTGTCCAGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATAGGTGCCTAATCCAGAA
* * * *
822980 AAGAATGGTGATTAGTATGGCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCG
65 AAGAATGGAGATTAGTATGAC-ATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCA
* *
823045 AAAATAGCAGAAAGAAAAGCTTTCCTTACG
129 AAAATGGCAGAAA-AAAAGCTTTCCTTATG
* * * * * * * *
823075 ACACCAAAGCATTAATGTCATGTATCCTAACGAAGGGAATGTGTTT-TTGGTTCCCAATCAAGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATAGGTGCCTAATCCAGAA
* * * * *
823139 AATAATGGAGACT-GTTATGAGCATTGATGCTTGTCTTATTTAAG-GTATGAACTTTGATT
65 AAGAATGGAGATTAG-TATGA-CATTCATGTTTGTCTTATTTAAGAG-ATAAACTTTGATT
823198 TTAAGGAAAA
Statistics
Matches: 442, Mismatches: 117, Indels: 80
0.69 0.18 0.13
Matches are distributed among these distances:
156 1 0.00
157 11 0.02
158 116 0.26
159 291 0.66
160 18 0.04
161 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
AAACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATAGGTGCCTAATCCAGAAA
AGAATGGAGATTAGTATGACATTCATGTTTGTCTTATTTAAGAGATAAACTTTGATTCTATCAAA
AATGGCAGAAAAAAAGCTTTCCTTATG
Found at i:823080 original size:476 final size:472
Alignment explanation
Indices: 822003--823282 Score: 1588
Period size: 476 Copynumber: 2.7 Consensus size: 472
821993 ACTAGAATCC
* * ** * * * *
822003 ATGTTTATGGTGCCTAATCCTTAAAAGAATAGGGATTAGTATGAG-TATTAATGTTTCTCATAAT
1 ATGTTTATAGTGCCTAGTCCAGAAAAGAAT-GGGATTAGTATG-GCTATTCATGTTTGTCTTATT
* * * * * *
822067 TAAAAGACAAACTTTGATTCTATCAAAAATAGTGGAAAAAAAAAAGCTTTTCCTGT-GATATCAA
64 TAAGAGACAAACTTTGATTCTATCAAAAATA--GCAGAAAGAAAAGC-TTTCCT-TAGACACCAA
* * * * *
822131 AGCATCAATGTCATGTAACCT-ATAGAAAGAAATATGTTTTAGGTTCCCAATCCTGAAAATAATG
125 AGCATCAATGTCATGTATCCTAAT-GAAGGGAATGTGTTTTAGGTTCCCAAT-CTAAAAATAATG
* * * * ** * * *
822195 GAGACTGTCACGAGAATCGTTGCTTGTCTTATTTGTGGGATTAACTTTGATTCTAAGGAAAATAG
188 GAGACTGTTATGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAA
*
822260 GGCAAAGAAAAGAGTTTCACA--CAATAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
253 GGCAAA-AAAAGAGTTTC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
822323 GTGGTTAGAATGCCTAATCACATAATGAATGAAGACCATTACTAGAATCCATGTTGTCTCATTTA
316 GTGTTTAGAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTGTCTCATTTA
* * * * *
822388 AGGCATGAACTTAGACTTTACAAAAATTAGTGAGAGGAAAGCCTTTCTTGCAAAACCAAAGCGTC
381 AGGAAAGAACTTAGACTTTACAAAAATTAGTGAGAGAAAAGCCTTTCTTGCAAAACCAAAACATC
* **
822453 AATATCGTGCATCCTTTTGAGAAGACT
446 AATATCGCGCATCCTAATGAGAAGACT
* *
822480 ATGTTTATAGTGCCTAGTCCAGAAAAGAATCGAGATTAGTATGACTATTCATGTTTGTCTTATTT
1 ATGTTTATAGTGCCTAGTCCAGAAAAGAAT-GGGATTAGTATGGCTATTCATGTTTGTCTTATTT
* ** ** *
822545 AAGAGATAAACTCCGATTCTATCAAAAACGGTAGAAAGAAAAGCTTTCCTTATGACACCAAAGCA
65 AAGAGACAAACTTTGATTCTATCAAAAATAGCAGAAAGAAAAGCTTTCCTTA-GACACCAAAGCA
* *
822610 TCAATGTCATATATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTAAAAAGAATGGAGAC
129 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATC-TAAAAATAATGGAGAC
* *
822675 TGTTATGAGCATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAAGGCAA
193 TGTTATGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAA
*
822740 AAAATAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTT
258 AAAA-AGAGTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
* * * * * *
822804 ATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTCTGTCTCGTTTGAGGAA
322 AGAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGT-TGTCTCATTTAAGGAA
* * ** *
822869 AGAACTTGGACTTTACAAAAATTGGT-AG-GAAAAATGCCTTTCTTGTGAAACCAAAACATTAAT
386 AGAACTTAGACTTTACAAAAATTAGTGAGAG-AAAA-GCCTTTCTTGCAAAACCAAAACATCAAT
*
822932 ATCGCGTATCCTAATGAGAAGACT
449 ATCGCGCATCCTAATGAGAAGACT
*
822956 ATGTTTA-AGGTGCCTTGTCCAGAAAAGAATGGTGATTAGTATGGCTATTCATGTTTGTCTTATT
1 ATGTTTATA-GTGCCTAGTCCAGAAAAGAATGG-GATTAGTATGGCTATTCATGTTTGTCTTATT
*
823020 TAAGAGACAAACTTTGATTCTATCGAAAATAGCAGAAAGAAAAGCTTTCCTTACGACACCAAAGC
64 TAAGAGACAAACTTTGATTCTATCAAAAATAGCAGAAAGAAAAGCTTTCCTTA-GACACCAAAGC
* * * *
823085 ATTAATGTCATGTATCCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAATAATGGAGA
128 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTA-AAAATAATGGAGA
* * *
823150 CTGTTATGAGCATTGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATATGGCA
192 CTGTTATGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCA
* * * *
823215 ATGAAAAGATTTTCCATGCAAAAGAAAATCATCAAAATCATTTATATCCTAATAAGGAGAATGTG
257 A-AAAAAGAGTTTCCATGCAAAAGAAAATCATCAATATCA-TT-TATCCTAATGAGGAGAATGTG
823280 TTT
319 TTT
823283 TGATGAGAAC
Statistics
Matches: 695, Mismatches: 90, Indels: 34
0.85 0.11 0.04
Matches are distributed among these distances:
473 3 0.00
474 15 0.02
475 228 0.33
476 316 0.45
477 109 0.16
478 2 0.00
479 22 0.03
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
ATGTTTATAGTGCCTAGTCCAGAAAAGAATGGGATTAGTATGGCTATTCATGTTTGTCTTATTTA
AGAGACAAACTTTGATTCTATCAAAAATAGCAGAAAGAAAAGCTTTCCTTAGACACCAAAGCATC
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTAAAAATAATGGAGACTGT
TATGAGCATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAAA
AAGAGTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAGAA
TGCCTAATCACAAAATGAATGAAGACCATTACTAGAATCCATGTTGTCTCATTTAAGGAAAGAAC
TTAGACTTTACAAAAATTAGTGAGAGAAAAGCCTTTCTTGCAAAACCAAAACATCAATATCGCGC
ATCCTAATGAGAAGACT
Found at i:823221 original size:159 final size:156
Alignment explanation
Indices: 822128--823222 Score: 373
Period size: 159 Copynumber: 6.9 Consensus size: 156
822118 CCTGTGATAT
* * * * * * * * *
822128 CAAAGCATCAATGTCATGTAACCT-ATAGAAAGAAATATGTTTTAGGTTCCCAATCCTGAAAATA
1 CAAAGCATCAATATCATGTATCCTAAT-G-AGGGAATGTGTTTAAGGTGCCCAAT-CAGAAAAGA
* * * ** ** * *
822192 ATGGAGACT-GTCACGAGAATCGTTGCTTGTCTTATTTGTGGGATTAACTTTGATTCTAAGGAAA
63 ATGGAGACTAGTTATGAGCATCCATGCTTGTCTTATTT-AAGGATGAACTTTGATTTTAAGGAAA
* * *
822256 ATAGGGCAAAGAAAAGAGTTTCAC--AC-AATAG
127 ATATGGC-AAGAAAAG-CTTTC-CTTACGAA-AC
* * * * * * * *
822287 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGGTT-AGAATGCCTAATCACATAATGA
1 CAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTAAG-GTGCCCAATCAGA-AAAGA
* * * * * *
822351 ATGAAGACCA-TTACT-AGAATCCATG-TTGTCTCATTTAAGGCATGAACTTAGACTTTACA--A
63 ATGGAGACTAGTTA-TGAGCATCCATGCTTGTCTTATTTAAGG-ATGAACTTTGATTTTA-AGGA
* * *
822411 AAAT-TAGTG-AGAGGAAAGCCTTT-CTTGCAAAAC
125 AAATAT-G-GCA-AGAAAAG-CTTTCCTTACGAAAC
* * * ** * * * * *
822444 CAAAGCGTCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATA-GTGCCTAGTCCAGAAAAGA
1 CAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTA-AGGTGCCCAAT-CAGAAAAGA
* * * * * ** * ***
822508 ATCGAGATTAG-TATGA-CTATTCATGTTTGTCTTATTTAAGAGATAAACTCCGATTCTATCAAA
63 ATGGAGACTAGTTATGAGC-ATCCATGCTTGTCTTATTTAAG-GATGAACTTTGATTTTAAGGAA
** * * * *
822571 AACGGTAGAAAGAAAAGCTTTCCTTATGACAC
126 AA-TATGGCAAGAAAAGCTTTCCTTACGAAAC
* * * *
822603 CAAAGCATCAATGTCATATATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTA-AAAAGA
1 CAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAAGGTGCCCAATC--AGAAAAGA
* * *
822667 ATGGAGACT-GTTATGAGCATCGATGCTTGTTTTATTTAAGGGATGAACTTTGATTTTAAGAAAA
63 ATGGAGACTAGTTATGAGCATCCATGCTTGTCTTATTTAA-GGATGAACTTTGATTTTAAGGAAA
* * * * * * *
822731 ATAAGGCAAAAAATAGATTTCCATGCAAAAG
127 ATATGGCAAGAAA-AGCTTTCCTTACGAAAC
* * * * * *
822762 AAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATA-GTGCCTAATCATAAAATGA
1 CAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTA-AGGTGCCCAATCAGAAAA-GA
* * ** * * * *
822826 ATGAAGA-TCA-TTACT-AGAATCCATG-TCTGTCTCGTTTGAGGAAAGAACTTGGACTTTACA-
63 ATGGAGACT-AGTTA-TGAGCATCCATGCT-TGTCTTATTTAAGG-ATGAACTTTGATTTTA-AG
* * **
822886 -AAAAT-TGGTAGGAAAAATGCCTTT-CTTGTGAAAC
123 GAAAATATGGCAAG-AAAA-G-CTTTCCTTACGAAAC
* * ** * * * ***
822920 CAAAACATTAATATCGCGTATCCTAATGAGAAGACTATGTTTAAGGTGCCTTGTCCAGAAAAGAA
1 CAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTAAGGTGCCCAAT-CAGAAAAGAA
* * * * ** * **
822985 TGGTGATTAG-TATG-GCTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCGAAA
64 TGGAGACTAGTTATGAGC-ATCCATGCTTGTCTTATTTAAG-GATGAACTTTGATTTTAAGGAAA
* *
823048 ATA-GCAGAAAGAAAAGCTTTCCTTACGACAC
127 ATATG--GCAAGAAAAGCTTTCCTTACGAAAC
* * * ** * *
823079 CAAAGCATTAATGTCATGTATCCTAACGAAGGGAATGTGTTTTTGGTTCCCAATCAAGAAAATAA
1 CAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAAGGTGCCCAATC-AGAAAAGAA
**
823144 TGGAGACT-GTTATGAGCATTGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAA
64 TGGAGACTAGTTATGAGCATCCATGCTTGTCTTATTTAAGG-ATGAACTTTGATTTTAAGGAAAA
823208 TATGGCAATGAAAAG
128 TATGGCAA-GAAAAG
823223 ATTTTCCATG
Statistics
Matches: 671, Mismatches: 193, Indels: 144
0.67 0.19 0.14
Matches are distributed among these distances:
155 1 0.00
156 2 0.00
157 82 0.12
158 183 0.27
159 379 0.56
160 20 0.03
161 4 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
CAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTAAGGTGCCCAATCAGAAAAGAATG
GAGACTAGTTATGAGCATCCATGCTTGTCTTATTTAAGGATGAACTTTGATTTTAAGGAAAATAT
GGCAAGAAAAGCTTTCCTTACGAAAC
Found at i:824931 original size:12 final size:12
Alignment explanation
Indices: 824901--825019 Score: 64
Period size: 12 Copynumber: 8.9 Consensus size: 12
824891 AAGAGAAAGA
*
824901 AGAGATAGCAGG
1 AGAGATAGGAGG
824913 -GATGATAGGAGG
1 AGA-GATAGGAGG
824925 AGAGATAAGAGAGACAG
1 AGAGAT-AG-GAG---G
824942 TAGAGATAGGAGG
1 -AGAGATAGGAGG
824955 -GATGATAGGAGG
1 AGA-GATAGGAGG
824967 AGAGATAAGAGAGACAG
1 AGAGAT-AG-GAG---G
824984 TAGAGATAGGAGG
1 -AGAGATAGGAGG
*
824997 -GATGATAGGGGG
1 AGA-GATAGGAGG
825009 AGAGATAGGAG
1 AGAGATAGGAG
825020 AGATAATAGA
Statistics
Matches: 86, Mismatches: 3, Indels: 36
0.69 0.02 0.29
Matches are distributed among these distances:
11 6 0.07
12 38 0.44
13 12 0.14
14 6 0.07
16 6 0.07
17 6 0.07
18 12 0.14
ACGTcount: A:0.41, C:0.03, G:0.45, T:0.12
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:824948 original size:18 final size:18
Alignment explanation
Indices: 824925--824991 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 18
824915 TGATAGGAGG
824925 AGAGATAAGAGAGACAGT
1 AGAGATAAGAGAGACAGT
* * *
824943 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATA--A--GA-GAGA-CAGT
824967 AGAGATAAGAGAGACAGT
1 AGAGATAAGAGAGACAGT
824985 AGAGATA
1 AGAGATA
824992 GGAGGGATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 16 0.43
19 3 0.08
20 3 0.08
22 3 0.08
23 3 0.08
24 9 0.24
ACGTcount: A:0.46, C:0.03, G:0.39, T:0.12
Consensus pattern (18 bp):
AGAGATAAGAGAGACAGT
Found at i:824979 original size:51 final size:42
Alignment explanation
Indices: 824892--825031 Score: 217
Period size: 42 Copynumber: 3.3 Consensus size: 42
824882 TAGCCCTCAA
* * *
824892 AGAGAAAGAAGAGATAGCAGGGATGATAGGAGGAGAGATAAG
1 AGAGACAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
824934 AGAGACAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
1 AGAGACAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* *
824976 AGAGACAGTAGAGATAGGAGGGATGATAGGGGGAGAGATAGG
1 AGAGACAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
* *
825018 AGAGATAATAGAGA
1 AGAGACAGTAGAGA
825032 GAGGGAGGAG
Statistics
Matches: 91, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 91 1.00
ACGTcount: A:0.44, C:0.02, G:0.42, T:0.11
Consensus pattern (42 bp):
AGAGACAGTAGAGATAGGAGGGATGATAGGAGGAGAGATAAG
Found at i:825017 original size:24 final size:23
Alignment explanation
Indices: 824901--825028 Score: 78
Period size: 24 Copynumber: 5.9 Consensus size: 23
824891 AAGAGAAAGA
* *
824901 AGAGATAGCAGGGATGATAGGAGG
1 AGAGATAGGAGAGATGATAGG-GG
* *
824925 AGAGATA--AGAGA-GACA--GT
1 AGAGATAGGAGAGATGATAGGGG
*
824943 AGAGATAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGATGATAGG-GG
* *
824967 AGAGATA--AGAGA-GACA--GT
1 AGAGATAGGAGAGATGATAGGGG
*
824985 AGAGATAGGAGGGATGATAGGGGG
1 AGAGATAGGAGAGATGATA-GGGG
*
825009 AGAGATAGGAGAGATAATAG
1 AGAGATAGGAGAGATGATAG
825029 AGAGAGGGAG
Statistics
Matches: 78, Mismatches: 14, Indels: 25
0.67 0.12 0.21
Matches are distributed among these distances:
18 16 0.21
20 8 0.10
21 12 0.15
22 8 0.10
23 1 0.01
24 33 0.42
ACGTcount: A:0.42, C:0.02, G:0.43, T:0.12
Consensus pattern (23 bp):
AGAGATAGGAGAGATGATAGGGG
Found at i:832016 original size:31 final size:31
Alignment explanation
Indices: 831975--832043 Score: 120
Period size: 31 Copynumber: 2.2 Consensus size: 31
831965 CATCTCAAGA
* *
831975 TCATTATTTAGGCAACCTTGGTTCATGGTTG
1 TCATCATTTAGGCAACCTTGGATCATGGTTG
832006 TCATCATTTAGGCAACCTTGGATCATGGTTG
1 TCATCATTTAGGCAACCTTGGATCATGGTTG
832037 TCATCAT
1 TCATCAT
832044 GTTTATAGTG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (31 bp):
TCATCATTTAGGCAACCTTGGATCATGGTTG
Found at i:832324 original size:14 final size:14
Alignment explanation
Indices: 832305--832335 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
832295 TTTTCTTGCG
832305 ATGCCAAAACATCA
1 ATGCCAAAACATCA
832319 ATGCCAAAACATCA
1 ATGCCAAAACATCA
832333 ATG
1 ATG
832336 TGTTTTAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.48, C:0.26, G:0.10, T:0.16
Consensus pattern (14 bp):
ATGCCAAAACATCA
Found at i:833061 original size:475 final size:472
Alignment explanation
Indices: 832043--833955 Score: 2049
Period size: 475 Copynumber: 4.1 Consensus size: 472
832033 GTTGTCATCA
* * * * * *
832043 TGTTTATAGTGCCTAGTAACAAAACGAAGGAAGATCATTACTAGAATCTATGTTTGTCAT-GTTT
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTC-TCGTTT
* * * * * *
832107 GAGGCA-CGAACTTAGACTTTACAAAAATTGTTGGGAAAAAATCCTTTCTTGTGAAACCAAAGCA
65 GAGGCATC-AACTTAGACTTTACAAAAATTGGTGGG-AAGAAGCCTTTATGGCGAAACCAAAGCA
* * * *
832171 -C-----C----A----TATGAGAAGACTATGCTTATGGTGCCTAAACCTAAAAAGAATGGGGAT
128 TCAATATCGTGTATCCTTATGAGAAAACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * * * * * * * * * *
832222 TAGTAGGACTATTCATATTTATCCTATCTACA-AGGCAGACTTTGATTATATCTAAGACGGTGAA
193 TA-TATGACTATTCAT-TTTGTCATATTTA-AGAGACAAACTTTAATTCTATCAAAAACGGTGGA
* ** * * **
832286 AAGAAAAGCTTTTCTTGCGATGCCAAAACATC-A----ATG---CCAAA-ACATCAATGTGTTTT
255 AAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTAACCAAAGAAAGGAATGTGTTTT
* * * * * *
832342 AGGTTCCTAATCGTGAAAATATTGGAGCCTGTTATGAGAATCGATGCTTATCTTATTTAAGGGAT
320 AGGTTCCTAATCATGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGAT
** * *
832407 GAACTTTGATTTTAAGGAAAATAGAG-AAGAGAATGGATTTCCAT-CAAAGGAAAATTATCAACA
385 GAACTTTGATTTTAAGGAAAATAGAGCAA-AGAAAAGATTTCCATGCAAAAGAAAATCATCAACA
*
832470 TCTTTTATCCTAATGAGGAGAATG
449 TCATTTATCCTAATGAGGAGAATG
* * *
832494 TGTTTATAGTGCCTAATCATAAAATGAATGAAAATCATTACTAGAATCCATATTTGTCTCATTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCGTTTG
* * * * *
832559 AGGTA-CAAACTCAGACTTTAGAAAAATTGGTGGCAAGCAAGGCTTTATGGCGAAACCAAAGCAT
66 AGGCATC-AACTTAGACTTTACAAAAATTGGTGGGAAG-AAGCCTTTATGGCGAAACCAAAGCAT
* * * *
832623 CAATAAT-GTGTATCCTTATGAGAATACGATGTTTACGATGCCTAATCCTAAAAAGAATGGGGAT
129 CAAT-ATCGTGTATCCTTATGAGAAAACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGAT
* * * * *
832687 TAGTATGACTATTCATGTTTGTCCTATTTAATAGGCAAACTTTAATTCTATCTAAAACGGTAGAA
193 TA-TATGACTATTCAT-TTTGTCATATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAA
* * *
832752 AGAAAAGCTTTTCCTGTGACACCAAAGCATCAATGTCATGTAACCTAAAGAAAGGAATGTATATT
256 AGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTAACC-AAAGAAAGGAATGTGTTTT
* *
832817 AGGTTCCTAATCATGAAAATAATGGAGATTGTTATGAGAATCGATGCTTGTCTTATTTAAGAGAT
320 AGGTTCCTAATCATGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGAT
* *
832882 GAACTTTGATTTTAAGGAGAATAGAG-AAGAGAAGAGATTTCCAT-C-AAAGAAAAATCATCAAC
385 GAACTTTGATTTTAAGGAAAATAGAGCAA-AGAAAAGATTTCCATGCAAAAG-AAAATCATCAAC
*
832944 ATCTTTTATCCTAAT-ATGGAGAATG
448 ATCATTTATCCTAATGA-GGAGAATG
* * *
832969 TCTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCGTGTTTGTCTCGTTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCGTTTG
* * * *
833034 AGGCATCAACTTAGACTTCACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATC
66 AGGCATCAACTTAGACTTTACAAAAATTGGTGGGAAG-AAGCCTTTATGGCGAAACCAAAGCATC
* ** **
833099 AATGTCGTGTATCCTTATGAGAGGACTTTGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
130 AATATCGTGTATCCTTATGAGAAAACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTA
* * *
833164 -ATG--T-TTC------TCATATTTAAGAGACAAACTTTGATTTTATCAAAAACAGTGGAAAGAA
195 TATGACTATTCATTTTGTCATATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAA
* ** * * *
833219 AAGCTTTTCTTGC-ATTGCCAAAGCATCAATGTCATGCAACCTAATGAAAGGAATATGTTTTAGG
260 AAGCTTTTCCTGCGA-CACCAAAGCATCAATGTCATGTAACC-AAAGAAAGGAATGTGTTTTAGG
* * * * *
833283 TTCCTAATCCTGAAAATAGTGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTATGGGATGAA
323 TTCCTAATCATGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATGAA
* **
833348 CTTTGATTATAAGGAAAATA-AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCA
388 CTTTGATTTTAAGGAAAATAGA-GCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCA
833412 TTTATCCTAATGAGGAGAATG
452 TTTATCCTAATGAGGAGAATG
* * *
833433 TGTTCATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTCTCTTGTTTG
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCGTTTG
* * ** *
833498 AGGCATAAACTTAGACTTTACAAAAATTGGTGGGAA-AATGCCTTTTTGTTGAAACCAAAACATC
66 AGGCATCAACTTAGACTTTACAAAAATTGGTGGGAAGAA-GCCTTTATGGCGAAACCAAAGCATC
* * * * *
833562 AATATCATGTATCCTAATGAGAAAACCATGTTTATGGTGCCTAGT-CTCGAAAAGAATAGGGATT
130 AATATCGTGTATCCTTATGAGAAAACCATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATT
* *
833626 ATCATGAGTATTCATTTTTGTCATATTTAAGAGACAAACTTTAATTCTATCAAAAACGATGGAAA
194 AT-ATGACTATTCA-TTTTGTCATATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAA
* * * * *
833691 GAAAAGC-TTTCTTGCGACACCAAAGCATCAATGTCATGTATTCCAATGAAGGGAATGTGTTTTT
257 GAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTA-ACCAAAGAAAGGAATGTGTTTTA
* * * * * *
833755 GGATCAC-AATCTTGAAAAGAATGGAGACTATTACAAGAATCGATGCTTGTCTAATTTAAGAGAT
321 GGTTC-CTAATCATGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGAT
* * * *
833819 AAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
385 GAACTTTGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACAT
*
833884 CATTTATCCT-AT-TGGAGAATG
450 CATTTATCCTAATGAGGAGAATG
*
833905 TGTTTATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
1 TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
833956 GTTTATGGTG
Statistics
Matches: 1242, Mismatches: 164, Indels: 91
0.83 0.11 0.06
Matches are distributed among these distances:
450 3 0.00
451 102 0.08
452 1 0.00
461 1 0.00
462 6 0.00
463 255 0.21
464 129 0.10
465 129 0.10
466 1 0.00
467 1 0.00
468 3 0.00
470 6 0.00
471 1 0.00
472 57 0.05
473 7 0.01
474 174 0.14
475 365 0.29
476 1 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (472 bp):
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCGTTTG
AGGCATCAACTTAGACTTTACAAAAATTGGTGGGAAGAAGCCTTTATGGCGAAACCAAAGCATCA
ATATCGTGTATCCTTATGAGAAAACCATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAT
ATGACTATTCATTTTGTCATATTTAAGAGACAAACTTTAATTCTATCAAAAACGGTGGAAAGAAA
AGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTAACCAAAGAAAGGAATGTGTTTTAGGTTC
CTAATCATGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTT
TGATTTTAAGGAAAATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAACATCATTTA
TCCTAATGAGGAGAATG
Found at i:834258 original size:366 final size:367
Alignment explanation
Indices: 833587--834327 Score: 1021
Period size: 366 Copynumber: 2.0 Consensus size: 367
833577 AATGAGAAAA
* * ** * *
833587 CCATGTTTATGGTGCCTAGTCTCGAAAAGAATAGGGATTATCATGAGTATTCATTTTTGTCATAT
1 CCATGTTTATGGTGCCTAATCTCAAAAAGAATAGGGATTAGAATGAGTATTCATGTTTCTCATAT
*
833652 TTAAGAGACAAACTTTAATTCTATCAAAAACGATGGAAAGAAAAGCTTTCTTGCGACACCAAAGC
66 TTAAGAGACAAACTTTAATTCTATCAAAAACGATGGAAAAAAAAGCTTTCTTGCGACACCAAAGC
* * * *
833717 ATCAATGTCATGTATTCCAATGAAGGGAATGTGTTTTTGGATCACAATCTTGAAAAGAATGGAGA
131 ATCAATGTCATGTATACCAATGAAAGGAATATGTTTTAGGATCACAATCTTGAAAAGAATGGAGA
833782 CTATTACAAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAGGGCA
196 CTATTACAAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAGGGCA
* *
833847 AAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT-AT-TGGAGAATGTGTTT
261 AAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
*
833910 ATAATGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
326 ATAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAAT
* *
833952 CCATGTTTATGGTGCCTAATC-CTAAAAAGAATCGGGATTAGAATGTGTA-TCAATGTTTCTCAT
1 CCATGTTTATGGTGCCTAATCTC-AAAAAGAATAGGGATTAGAATGAGTATTC-ATGTTTCTCAT
* * * * * * * *
834015 ATTTAGGGGATAAACTTTGATTCTTTCAAAAATGGTGGAAAAAAAAGCTTTTCTTGTGACACCAA
64 ATTTAAGAGACAAACTTTAATTCTATCAAAAACGATGGAAAAAAAAGC-TTTCTTGCGACACCAA
* * *
834080 AGCATCAATGTCATGTA-ACCTACTGAAAGGAATATGTTTTAGGTTC-CTAAT-TCTGAAAATAA
128 AGCATCAATGTCATGTATACC-AATGAAAGGAATATGTTTTAGGATCAC-AATCT-TGAAAAGAA
* * * * * *
834142 TGGAGACTATTACGAGAATC-ATTGCTTGTCTTATTTACGGGATGAACTTTGATTTTAAGGAAAA
190 TGGAGACTATTACAAGAATCGA-TGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAA
* *
834206 TAGGGCAAAGAAAAGATTTTCAAGCAAAAGAAAATCATCAATATTATTTATCCTAATGAGGAGAA
254 TAGGGCAAAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * *
834271 TGTGTTTATAGTGCCTAATCACATAGTGAATGAAGACCATTACTAGAAT
319 TGTGTTTATAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAAT
834320 CCATGTTT
1 CCATGTTT
834328 GTCTCATTTA
Statistics
Matches: 329, Mismatches: 38, Indels: 15
0.86 0.10 0.04
Matches are distributed among these distances:
364 3 0.01
365 95 0.29
366 170 0.52
367 2 0.01
368 59 0.18
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (367 bp):
CCATGTTTATGGTGCCTAATCTCAAAAAGAATAGGGATTAGAATGAGTATTCATGTTTCTCATAT
TTAAGAGACAAACTTTAATTCTATCAAAAACGATGGAAAAAAAAGCTTTCTTGCGACACCAAAGC
ATCAATGTCATGTATACCAATGAAAGGAATATGTTTTAGGATCACAATCTTGAAAAGAATGGAGA
CTATTACAAGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAGGGCA
AAGAAAAGATTTCCAAGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
ATAATGCCTAATCACAAAATGAATGAAGACCATTACTAGAAT
Found at i:835486 original size:159 final size:154
Alignment explanation
Indices: 834780--835877 Score: 515
Period size: 158 Copynumber: 6.9 Consensus size: 154
834770 ATTTTAGGCA
* * * * *
834780 CAAACTTGGACTTCACAAAAATTGGTGGCAAG-AAAGCCTTTCTTGCGAAACCAAAGCATCAATA
1 CAAACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCATGC-AAACCAAAGCATCAATA
* * * * * *** **
834844 TCGTGTATCCTTATGAGAATACTATGTTTACAATGCCTAATCCCGAAAAGAATGGGGATTAGTAT
63 TCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT-CTAAAAAGAAT-GGGATTAGTAT
** * * * *
834909 GACCATTCATATTTGTCCTATTTAATAGG
126 GAGAATTCATGTTTGTCTTATTTAAGAGC
* * * *
834938 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAATGCATCAATG
1 CAAACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCATGC-AAACCAAAGCATCAATA
* * * * * * * *
835003 TCATATATCCTAACGA-AATGAATGTATTTTTTGTTCCCAATC-AAGAAA-ATATGGAGACT-GT
63 TCATGTATCCTAATGAGAA-GAATGTGTTTATGGTGCCTAATCTAA-AAAGA-ATGG-GATTAG-
* * * *
835064 TACGAGAA-TCGATGTTTTTCTTATTTAACAGA
123 TATGAGAATTC-ATGTTTGTCTTATTTAAGAGC
* * * ** *
835096 AAAACTTTGATTTTA-AGGAAAATAGG-GGAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
1 CAAACTTTGA-TTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCATGC-AAACCAAAGCATCAA
* * * * * * * *
835159 TATCATTTATCCAAATGGGGAGAATGTGTTTATAGTGCCTAATC-ACAAAATGAATGAAGATCAT
61 TATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTA-AAAA-GAATG-GGATTAG
* * * * *
835223 TACT-AGAATCCATATTTGTCTCAATTGAG-GC
123 TA-TGAGAATTCATGTTTGTCTTATTTAAGAGC
* * * * * * * *
835254 ACGAACATAGACTTTACAAAAATTGGTGGGAA-AAAGGCCTTTCTTGCCAAACCAAAACATCAAT
1 -CAAACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCATG-CAAACCAAAGCATCAAT
* * * * * * *
835318 ATTACGTATCCTATTGAGAAGACTATGTTTATGGAGCCTAATCTAGAGAAGAATAGGGATTAGTA
62 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTA-AAAAGAAT-GGGATTAGTA
*
835383 TGAGTATTCATGTTTGTCTTATTTAAGAGC
125 TGAGAATTCATGTTTGTCTTATTTAAGAGC
*
835413 CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATA
1 CAAACTTTGATT-TA-CAAAAATGGTGGAAAGAAAAGCTTTTCATGCAA-ACCAAAGCATCAATA
* * * * *
835478 TCATGTATCCTAATGA-AGAGAATGTGTTT-TAGGTTCCCAATCCTAAAAGGAATGGAGACTATT
63 TCATGTATCCTAATGAGA-AGAATGTGTTTAT-GGTGCCTAAT-CTAAAAAGAATGG-GATTAGT
** * * * *
835541 ATGACCATTGATGCTTGTCTTATTTAAGGGA
124 ATGAGAATTCATGTTTGTCTTATTTAAGAGC
* * * * * ** *
835572 TAAACTTTAATTTTA-AGGAAAATAGG-GCAAAGAAAAGGTTTCCATGCAAAAGAAAATCATCAA
1 CAAACTTTGA-TTTACA--AAAAT-GGTGGAAAGAAAAGCTTTTCATGC-AAACCAAAGCATCAA
* ** * * * * * *
835635 TATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATT
61 TATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCT-AAAAAGAATG-GGATTAGT
* * * *
835700 ACT-AGAATCCATATTTGTCTTGTTTGAG-GC
124 A-TGAGAATTCATGTTTGTCTTATTTAAGAGC
* * * * * * *
835730 ACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGGCCTTTCCTGCGAAACCAAAACATCAAT
1 -CAAACTTTGA-TTTACAAAAA-TGGTGGAAAGAAAAGCTTTTCATGC-AAACCAAAGCATCAAT
* ** * * * * *
835794 ATCGTGTATCCTTTTGAGAAGACTATGTTTATGGAGCCTATTCTAGAAAAAAATAGGGATTAGTA
62 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTA-AAAAGAAT-GGGATTAGTA
**
835859 TGAGTGTTCATGTTTGTCT
125 TGAGAATTCATGTTTGTCT
835878 ATCAAAAATG
Statistics
Matches: 691, Mismatches: 194, Indels: 110
0.69 0.19 0.11
Matches are distributed among these distances:
156 1 0.00
157 15 0.02
158 332 0.48
159 328 0.47
160 15 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (154 bp):
CAAACTTTGATTTACAAAAATGGTGGAAAGAAAAGCTTTTCATGCAAACCAAAGCATCAATATCA
TGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCTAAAAAGAATGGGATTAGTATGAGAA
TTCATGTTTGTCTTATTTAAGAGC
Found at i:835729 original size:476 final size:476
Alignment explanation
Indices: 834754--836677 Score: 1927
Period size: 476 Copynumber: 4.1 Consensus size: 476
834744 TATAGTGCCT
* * * * * *
834754 AATCCATATTAGTCTCATTTTAGGCACAAACTTGGACTTCACAAAAATTGGTGGCAAGAAA-GCC
1 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-AAAGGCC
* ** * **
834818 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAATACTATGTTTA-CAATGCCT
65 TTTCTTGCGAAACCAAAACATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGA-GCCT
** * ** * * *
834882 AATCCCGAAAAGAATGGGGATTAGTATGACCATTCATATTTGTCCTATTTAATAGGCAAACTTTG
129 AATCTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGA-GCAAACTTTG
* * * *
834947 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAATGCATCAATGTCATATATC
193 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAATGTCATGTATC
* * ** ** * *
835012 CTAACGAA-ATGAATGTATTTTTTGTTCCCAATCAAGAAAA-TATGGAGACTGTTACGAGAATCG
258 CTAATGAAGATGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCA
* * * * *
835075 ATGTTTTTCTTATTTAACAGAAAAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCA
323 ATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* ***
835140 TGCAAAAGAAAATCATCAATATCATTTATCCAAATGGGGAGAATGTGTTTATAGTGCCTAATCAC
388 TGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCAC
835205 AAAATGAATGAAGATCATTACTAG
453 AAAATGAATGAAGATCATTACTAG
* *
835229 AATCCATATTTGTCTCAATTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
1 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
* *
835294 TTCTTGCCAAACCAAAACATCAATATTACGTATCC-TATTGAGAAGACTATGTTTATGGAGCCTA
66 TTCTTGCGAAACCAAAACATCAATATCACGTATCCTTA-TGAGAAGACTATGTTTATGGAGCCTA
*
835358 ATCTAGAGAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCCAAACTTTGA
130 ATCTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-CAAACTTTGA
* *
835423 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCC
194 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAATGTCATGTATCC
* * ** **
835488 TAATGAAGA-GAATGTGTTTTAGGTTCCCAATCCT-AAAAGGAATGGAGACTATTATGACCATTG
259 TAATGAAGATGAATGTGTTTTAGGTTCCCAATCCTGAAAA-GAATGGAGACTGTTACGAGAATCA
* * *
835551 ATGCTTGTCTTATTTAAGGGATAAACTTTAATTTTAAGGAAAATAGGGCAAAGAAAAGGTTTCCA
323 ATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
*
835616 TGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCTC
388 TGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCAC
835681 AAAATGAATGAAGATCATTACTAG
453 AAAATGAATGAAGATCATTACTAG
**
835705 AATCCATATTTGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
1 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
* ** * *
835770 TTCCTGCGAAACCAAAACATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGAGCCTAT
66 TTCTTGCGAAACCAAAACATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGAGCCTAA
*
835835 TCTAGAAAAAAATAGGGATTAGTATGAG------TG--T-TC--A--T----G-----TTTG--T
131 TCTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCAAACTTTGATT
* * * * * * * * *
835876 CTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCAACACGAAAACATCAATG--TC-TTGTAAC
196 CTATCAAAAATGGTGGAAAGAAAAGC---T-TT---TCATG-CAACACCAAAGCATCAATGTCAT
* ** ** * ** ** * ***** * ** *
835938 CTAAT-GAAGGGAATATGTTTTAGGTTCCCAATCCTGAAAATAATG--GAG-AT------TGTTA
253 GT-ATCCTAATGAAGATGAATGTGTTTTAGGTTCC---CAATCCTGAAAAGAATGGAGACTGTTA
* * * * * * * *
835993 TGAGAATCAATGCTCGTCTTATTTAAGGGGTGAACTTTTATTTTATGGAAAATAGGGTAAAG-AA
314 CGAGAATCAATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAA
* ** * * *
836057 AGAATTTTCACCCAAAAGAAAATCATCAATATCATGTATCCT--CATGCGAAGAATGTGTTTACA
379 AG-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAG-G-AGAATGTGTTTATA
*
836120 GTGCCTAATCTCAAAATGAATGAAGATCATTACTAG
441 GTGCCTAATCACAAAATGAATGAAGATCATTACTAG
** * ** * * * *
836156 AATTAATGTTTGTCTTGTTTGAGACACGAACTTTGATTTTACAAAAATT-GTAGGGAAAAAAGCC
1 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAAAAGGCC
* * * * * *
836220 TTTCTTGTGAAACCAAAGCACCAATA--ACGTTTACCCTTATGAGAAGGCTATGTTTATGGTGCC
65 TTTCTTGCGAAACCAAAACATCAATATCACG--TATCCTTATGAGAAGACTATGTTTATGGAGCC
* *
836283 TAATCCTA-ACAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTT
128 TAAT-CTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG-CAAACTT
* * * *
836347 CGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
191 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAATGTCATGTA
* * * * * * * *
836412 ACCTAATGAAG-GGAATGTGTTTTTGCTTCACAGTCTTGAAAAGAATGGAGACTGTTACGGGAAT
256 TCCTAATGAAGATGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAAT
*
836476 CAATGCTTGTCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
321 CAATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
** * **
836541 CATGCAAAAGAAAATTGTCAATATCAATTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
386 CATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATC
*
836606 ACAAAATGAAAGAAGATCATTACTAG
451 ACAAAATGAATGAAGATCATTACTAG
*
836632 AATCCATCTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
1 AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
836678 TGAAAATTAG
Statistics
Matches: 1173, Mismatches: 206, Indels: 139
0.77 0.14 0.09
Matches are distributed among these distances:
449 4 0.00
450 7 0.01
451 293 0.25
452 3 0.00
453 4 0.00
454 1 0.00
455 2 0.00
456 9 0.01
457 16 0.01
458 3 0.00
459 11 0.01
460 6 0.01
462 1 0.00
463 1 0.00
464 1 0.00
465 1 0.00
467 6 0.01
468 9 0.01
469 3 0.00
470 14 0.01
471 9 0.01
472 2 0.00
473 1 0.00
474 13 0.01
475 243 0.21
476 503 0.43
477 6 0.01
478 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (476 bp):
AATCCATATTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
TTCTTGCGAAACCAAAACATCAATATCACGTATCCTTATGAGAAGACTATGTTTATGGAGCCTAA
TCTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGCAAACTTTGATT
CTATCAAAAATGGTGGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAATGTCATGTATCCTA
ATGAAGATGAATGTGTTTTAGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGAGAATCAATG
CTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAG
Found at i:835824 original size:158 final size:156
Alignment explanation
Indices: 834754--835825 Score: 482
Period size: 159 Copynumber: 6.8 Consensus size: 156
834744 TATAGTGCCT
* * * * * *
834754 AATCCATATTAGTCTCATTTTAGGCACAAACTTGGACTTCACAAAAATTGGTGGCAAGAAA-GCC
1 AATCCATATTTGTCTTATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGG-AAAAAAGGCC
* * * * * * * *
834818 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAATACTATGTTTACAATGCCTA
65 TTTCCTGC-AAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTA
* ** * *
834883 ATCCCGAAAA-GAATGGGGATTAGTAT-G
129 ATCTC-AAAATGAATGAAGATCATTATAG
* * * *
834910 ACCATTCATATTTGTCCTATTTAATAGG--CAAACTTTGA-TTCTATCAAAAA-CGGTGGAAAGA
1 A--ATCCATATTTGTCTTATTT-A-AGGCACAAACTTAGACTT-TA-CAAAAATTGGTGGAAA-A
* * * * ** * * * * * * *
834971 AAAGCTTTTCATGCGACACCAATGCATCAATGTCATATATCCTAACGA-AATGAATGTATTTTTT
59 AAGGCCTTTCCTGC-AAACCAAAACATCAATATCATGTATCCTAATGAGAA-GAATATGTTTATA
* * ** * * *
835035 GTTCCCAATCAAGAAAAT--ATGGAGA-CTGTTACGAG
122 GTGCCTAATC-TCAAAATGAATGAAGATC-ATTA-TAG
* * * * * * * * *
835070 AATCGATGTTTTTCTTATTTAACAG-AAAAACTTTGATTTTA-AGGAAAATAGG-GGAAAGAAAA
1 AATCCATATTTGTCTTATTTAA-GGCACAAACTTAGACTTTACA--AAAATTGGTGGAAA-AAAG
* ** * * * * *
835132 G-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCAAATGGGGAGAATGTGTTTATAGTG
62 GCCTTTCC-TGCAAACCAAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTG
*
835196 CCTAATCACAAAATGAATGAAGATCATTACTAG
125 CCTAATCTCAAAATGAATGAAGATCATTA-TAG
* * * * * *
835229 AATCCATATTTGTCTCAATTGAGGCACGAACATAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
1 AATCCATATTTGTCTTATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAGGCCT
* * * * * * *
835294 TTCTTGCCAAACCAAAACATCAATATTACGTATCCTATTGAGAAGACTATGTTTATGGAGCCTAA
66 TTCCTG-CAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAA
* * *
835359 TCT-AGAGAA-GAAT-AGGGATTAGTATGAG
130 TCTCA-A-AATGAATGA-AGATCATTAT-AG
* * * * *
835387 TATTCATGTTTGTCTTATTTAAGAGC-CAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAA
1 AATCCATATTTGTCTTATTTAAG-GCACAAACTTAGACTT-TA-CAAAAATTGGTGGAAA-AAAG
* * * *
835449 GCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGA-AGAGAATGTGTTT-TAGGT
62 GCCTTTCCTGCAA-ACCAAAACATCAATATCATGTATCCTAATGAGA-AGAATATGTTTATA-GT
* * * *
835512 TCCCAATC-CTAAAAGGAATGGAGA-CTATTAT-G
124 GCCTAATCTC-AAAATGAATGAAGATC-ATTATAG
* * * * *
835544 -A-CCATTGATGCTTGTCTTATTTAAGGGATAAACTTTA-ATTTTA-AGGAAAATAGG-GCAAAG
1 AATCCA-T-AT--TTGTCTTATTTAAGGCACAAAC-TTAGACTTTACA--AAAATTGGTG-GAA-
** * ** * *
835604 AAAAGG--TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTA
57 AAAAGGCCTTTCC-TGCAAACCAAAA-CATCAATATCATGTATCCTAATGAGAAGAATATGTTTA
835667 TAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAG
120 TAGTGCCTAATCTCAAAATGAATGAAGATCATTA-TAG
* * * *
835705 AATCCATATTTGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCT
1 AATCCATATTTGTCTTATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAGGCCT
* ** *
835770 TTCCTGCGAAACCAAAACATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTAT
66 TTCCTGC-AAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTAT
835826 GGAGCCTATT
Statistics
Matches: 676, Mismatches: 165, Indels: 148
0.68 0.17 0.15
Matches are distributed among these distances:
155 2 0.00
156 5 0.01
157 34 0.05
158 283 0.42
159 317 0.47
160 26 0.04
161 4 0.01
162 2 0.00
163 3 0.00
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.30
Consensus pattern (156 bp):
AATCCATATTTGTCTTATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAAAGGCCT
TTCCTGCAAACCAAAACATCAATATCATGTATCCTAATGAGAAGAATATGTTTATAGTGCCTAAT
CTCAAAATGAATGAAGATCATTATAG
Found at i:836170 original size:927 final size:925
Alignment explanation
Indices: 834949--836677 Score: 2471
Period size: 927 Copynumber: 1.9 Consensus size: 925
834939 AAACTTTGAT
* * ** *
834949 TCTATCAAAAACGGTGGAAAGAAAAGCTTTTCATGCGACACCAATGCATCAATGTCATATATCCT
1 TCTATCAAAAACGATGGAAAGAAAAGCTTTTCATGCAACACCAAAACATCAATGTCATATAACCT
* * ** * *
835014 AACGAAATGAATGTATTTTTTGTTCCCAATCAAGAAAATATGGAGACTGTTACGAGAATCGATGT
66 AACGAAAGGAATATATTTTAGGTTCCCAATCAAGAAAATATGGAGACTGTTACGAGAATCAATGC
** **
835079 TTTTCTTATTTAACAGAAAAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCATGCA
131 TCGTCTTATTTAACAGAAAAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCACCCA
* * * *
835144 AAAGAAAATCATCAATATCATTTATCCAAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAA
196 AAAGAAAATCATCAATATCATGTATCCAAATGCGAAGAATGTGTTTACAGTGCCTAATCACAAAA
* *
835209 TGAATGAAGATCATTACTAGAATCCATATTTGTCTCAATTGAGGCACGAACATAGACTTTACAAA
261 TGAATGAAGATCATTACTAGAATCAATATTTGTCTCAATTGAGACACGAACATAGACTTTACAAA
* * *
835274 AATTGGT-GGGAAAAAGGCCTTTCTTGCCAAACCAAAACATCAATATTACG-TATCC-TATTGAG
326 AATT-GTAGGGAAAAAAGCCTTTCTTGCCAAACCAAAACACCAATA--ACGTTACCCTTA-TGAG
*
835336 AAGACTATGTTTATGGAGCCTAAT-CTAGAGAAGAATAGGGATTAGTATGAGTATTCATGTTTGT
387 AAGACTATGTTTATGGAGCCTAATCCTA-ACAAGAATAGGGATTAGTATGAGTATTCATGTTTGT
* * *
835400 CTTATTTAAGAGCCAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACAC
451 CTTATTTAAGAGACAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACAC
* * *
835465 CAAAGCATCAATATCATGTATCCTAATGAAGAGAATGTGTTTTAGGTTCCCAATCCT-AAAAGGA
516 CAAAGCATCAATATCATGTAACCTAATGAAGAGAATGTGTTTTAGCTTCACAATCCTGAAAA-GA
* * ** * *
835529 ATGGAGACTATTATGACCATTGATGCTTGTCTTATTTAAGGGATAAACTTTAATTTTAAGGAAAA
580 ATGGAGACTATTACGACAATCAATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAA
* *
835594 TAGGGCAAAGAAAAGGTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAA
645 TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTAACAAGGAGAA
* * **
835659 TGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTTGTT
710 TGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATATTTGTCTCATT
835724 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAAACCAAAACA
775 TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAAACCAAAACA
835789 TCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGAGCCTATTCTAGAAAAAAATAGGGAT
840 TCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGAGCCTATTCTAGAAAAAAATAGGGAT
835854 TAGTATGAGTGTTCATGTTTG
905 TAGTATGAGTGTTCATGTTTG
* * * * *
835875 TCTATCAAAAATGATGGAAAGAAAAGCTTTTCTTGCAACACGAAAACATCAATGTCTTGTAACCT
1 TCTATCAAAAACGATGGAAAGAAAAGCTTTTCATGCAACACCAAAACATCAATGTCATATAACCT
* * * ** * *
835940 AATGAAGGGAATATGTTTTAGGTTCCCAATCCTGAAAATAATGGAGATTGTTATGAGAATCAATG
66 AACGAAAGGAATATATTTTAGGTTCCCAATCAAGAAAAT-ATGGAGACTGTTACGAGAATCAATG
** *** * * * *
836005 CTCGTCTTATTTAAGGGGTGAACTTTTATTTTATGGAAAATAGGGTAAAG-AAAGAATTTTCACC
130 CTCGTCTTATTTAACAGAAAAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAG-ATTTCCACC
** *
836069 CAAAAGAAAATCATCAATATCATGTATCCTCATGCGAAGAATGTGTTTACAGTGCCTAATCTCAA
194 CAAAAGAAAATCATCAATATCATGTATCCAAATGCGAAGAATGTGTTTACAGTGCCTAATCACAA
* * *** * * *
836134 AATGAATGAAGATCATTACTAGAATTAATGTTTGTCTTGTTTGAGACACGAACTTTGATTTTACA
259 AATGAATGAAGATCATTACTAGAATCAATATTTGTCTCAATTGAGACACGAACATAGACTTTACA
** *
836199 AAAATTGTAGGGAAAAAAGCCTTTCTTGTGAAACCAAAGCACCAATAACGTTTACCCTTATGAGA
324 AAAATTGTAGGGAAAAAAGCCTTTCTTGCCAAACCAAAACACCAATAACG-TTACCCTTATGAGA
* *
836264 AGGCTATGTTTATGGTGCCTAATCCTAACAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
388 AGACTATGTTTATGGAGCCTAATCCTAACAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCT
* *
836329 TATTTAGGAGACAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCA
453 TATTTAAGAGACAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCA
* * * * *
836394 AAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGCTTCACAGTCTTGAAAAGAATG
518 AAGCATCAATATCATGTAACCTAATGAAGAGAATGTGTTTTAGCTTCACAATCCTGAAAAGAATG
* ** *
836459 GAGACTGTTACGGGAATCAATGCTTGTCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAG
583 GAGACTATTACGACAATCAATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAG
** **
836524 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATTGTCAATATCAATTATCCTAATGAGGAGAATGT
648 GGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTAACAAGGAGAATGT
*
836589 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATCTTTGTCTCATTTGA
713 GTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATATTTGTCTCATTTGA
836654 GGCACGAACTTAGACTTTACAAAA
778 GGCACGAACTTAGACTTTACAAAA
836678 TGAAAATTAG
Statistics
Matches: 699, Mismatches: 96, Indels: 15
0.86 0.12 0.02
Matches are distributed among these distances:
925 3 0.00
926 91 0.13
927 596 0.85
928 9 0.01
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.30
Consensus pattern (925 bp):
TCTATCAAAAACGATGGAAAGAAAAGCTTTTCATGCAACACCAAAACATCAATGTCATATAACCT
AACGAAAGGAATATATTTTAGGTTCCCAATCAAGAAAATATGGAGACTGTTACGAGAATCAATGC
TCGTCTTATTTAACAGAAAAACTTTGATTTTAAGGAAAATAGGGGAAAGAAAAGATTTCCACCCA
AAAGAAAATCATCAATATCATGTATCCAAATGCGAAGAATGTGTTTACAGTGCCTAATCACAAAA
TGAATGAAGATCATTACTAGAATCAATATTTGTCTCAATTGAGACACGAACATAGACTTTACAAA
AATTGTAGGGAAAAAAGCCTTTCTTGCCAAACCAAAACACCAATAACGTTACCCTTATGAGAAGA
CTATGTTTATGGAGCCTAATCCTAACAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTAT
TTAAGAGACAAACTTCGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACAACACCAAAG
CATCAATATCATGTAACCTAATGAAGAGAATGTGTTTTAGCTTCACAATCCTGAAAAGAATGGAG
ACTATTACGACAATCAATGCTTGTCTAATTTAAGAGATAAACTTTAATTTTAAGGAAAATAGGGC
AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCAATTATCCTAACAAGGAGAATGTGTT
TATAGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGC
ACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAGGCCTTTCCTGCGAAACCAAAACATCAATA
TCGTGTATCCTTTTGAGAAGACTATGTTTATGGAGCCTATTCTAGAAAAAAATAGGGATTAGTAT
GAGTGTTCATGTTTG
Found at i:837047 original size:379 final size:380
Alignment explanation
Indices: 836303--837056 Score: 1001
Period size: 380 Copynumber: 2.0 Consensus size: 380
836293 AAGAATAGGG
* * * *
836303 ATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTCGATTCTATCAAAAATGGTGG
1 ATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTCGATTCTATCAAAAACGGTGG
* * *
836368 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTT
66 AAAGAAAAGCTTTTCTTACCACACAAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTATT
* * * * *
836433 TTTGCTTCACAGTCTTGAAAAGAATGGAGACTGTTACGGGAATCAATGCTTGTCTAATTTAAGAG
131 TTAGCATCACAATCCTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTAATTTAAGAG
** * **
836498 ATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATTGTCAAT
196 ATAAACTTTGATTACAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAAT
** * *
836563 ATCAATTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAGATCATTA
261 ATCAATTAAACTAATGAGGAGAATGTGTTTACAGTACCTAATCACAAAATGAAAGAAGATCATTA
*
836628 CTAGAATCCATCTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAATGAAA
326 CTAGAATCCATCTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAATGAAA
* * * * * *
836683 ATTAGTTTGACTATTCATTTTTGTGTTAATTAAGAGCCAAATTTTGATTCTATCAAAAACGAG-G
1 ATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTCGATTCTATCAAAAACG-GTG
* *
836747 GAAAGAAAAGCTTTTCTT-CCATCACAAAAGCATCAATGTCATGTATCTTAATGAAGGGAATGTA
65 GAAAGAAAAGCTTTTCTTACCA-CACAAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTA
* * * * * * **
836811 TTTTAGGATCCCAATCCTGAAAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTTGG
129 TTTTAGCATCACAATCCTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTAATTTAAG
* * * * * * *
836876 GGTTGAATTTTGATTACAAGG-AAATAGGGTAAAAAAAATATTTTCATGCAAAAGAAAATCATCA
194 AGATAAACTTTGATTACAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCA
* * *
836940 ATATCATTTAAACTAATGAGGAGAATGTGTTTACAGTATCTAATCACAAAATGAATGAAGATCAT
259 ATATCAATTAAACTAATGAGGAGAATGTGTTTACAGTACCTAATCACAAAATGAAAGAAGATCAT
* * * *
837005 TACTAGAATCCATGTTTGTCTCATTTGGGGCATAAACTTAGACTTTGCAAAA
324 TACTAGAATCCATCTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAA
837057 ATTGGTGGGA
Statistics
Matches: 320, Mismatches: 52, Indels: 5
0.85 0.14 0.01
Matches are distributed among these distances:
379 144 0.45
380 175 0.55
381 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (380 bp):
ATTAGTATGACTATTCATGTTTGTCTTAATTAAGAGACAAACTTCGATTCTATCAAAAACGGTGG
AAAGAAAAGCTTTTCTTACCACACAAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTATT
TTAGCATCACAATCCTGAAAAGAATGGAGACTGTTACGAGAATCAATGCTTGTCTAATTTAAGAG
ATAAACTTTGATTACAAGGAAAATAGGGCAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAAT
ATCAATTAAACTAATGAGGAGAATGTGTTTACAGTACCTAATCACAAAATGAAAGAAGATCATTA
CTAGAATCCATCTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAATGAAA
Found at i:842170 original size:42 final size:42
Alignment explanation
Indices: 842115--842233 Score: 130
Period size: 42 Copynumber: 2.8 Consensus size: 42
842105 TTCTTCTGTC
* * ** * *
842115 CTCCTCCTGTCATCTCTCCTCTCTTTATTATCTCTCATATCT
1 CTCCTCCTATCATCCCTCCAATCTCTACTATCTCTCATATCT
* *
842157 CTCCTCCTATCATCCCTCCAATCTCTACTGTCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCAATCTCTACTATCTCTCATATCT
* * * *
842199 CTCCTCCTATCATCCTTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCAATCTCTACTATCTCT
842234 TTGAGGGCTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 65 1.00
ACGTcount: A:0.12, C:0.42, G:0.02, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCAATCTCTACTATCTCTCATATCT
Found at i:842218 original size:24 final size:23
Alignment explanation
Indices: 842152--842224 Score: 66
Period size: 21 Copynumber: 3.3 Consensus size: 23
842142 TTATCTCTCA
842152 TATCTCTCCTCCTATCATCCCTCC
1 TATCTCTCCTCCTATCAT-CCTCC
* * *
842176 -A-ATCT-CTACTGTC-T-CTCC
1 TATCTCTCCTCCTATCATCCTCC
842194 TATCTCTCCTCCTATCATCCTTCC
1 TATCTCTCCTCCTATCATCC-TCC
842218 TATCTCT
1 TATCTCT
842225 TCTTTCTCTT
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 4 0.11
19 1 0.03
20 4 0.11
21 12 0.32
22 4 0.11
23 2 0.05
24 10 0.27
ACGTcount: A:0.14, C:0.44, G:0.01, T:0.41
Consensus pattern (23 bp):
TATCTCTCCTCCTATCATCCTCC
Found at i:844681 original size:12 final size:12
Alignment explanation
Indices: 844661--844695 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
844651 AAGAGAAAGA
844661 AGAGATAGGAGG
1 AGAGATAGGAGG
844673 -GATGATAGGAGG
1 AGA-GATAGGAGG
844685 AGAGATAGGAG
1 AGAGATAGGAG
844696 AGATAGTAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.40, C:0.00, G:0.49, T:0.11
Consensus pattern (12 bp):
AGAGATAGGAGG
Found at i:844696 original size:9 final size:9
Alignment explanation
Indices: 844682--844712 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
844672 GGATGATAGG
844682 AGGAGAGAT
1 AGGAGAGAT
844691 AGGAGAGAT
1 AGGAGAGAT
*
844700 AGTAGAGAT
1 AGGAGAGAT
844709 AGGA
1 AGGA
844713 AGGATAATAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.42, T:0.13
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:844711 original size:42 final size:42
Alignment explanation
Indices: 844652--844773 Score: 163
Period size: 42 Copynumber: 2.9 Consensus size: 42
844642 TAGCCCTCAA
* * * *
844652 AGAGAAAGAAGAGATAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAAATAAG
* *
844694 AGAGATAGTAGAGATAGGAAGGATAATAGGAGGAGAAATAAG
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAAATAAG
* * *
844736 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGAAA
1 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAAA
844774 AGAAGAAGAT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.48, C:0.01, G:0.41, T:0.11
Consensus pattern (42 bp):
AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAAATAAG
Found at i:849453 original size:22 final size:22
Alignment explanation
Indices: 849425--849468 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
849415 GCCGAGAGGC
849425 CAACAAAGCTTTCCTCACTTCT
1 CAACAAAGCTTTCCTCACTTCT
849447 CAACAAAGCTTTCCTCACTTCT
1 CAACAAAGCTTTCCTCACTTCT
849469 TTTTCTCTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.36, G:0.05, T:0.32
Consensus pattern (22 bp):
CAACAAAGCTTTCCTCACTTCT
Found at i:851058 original size:42 final size:42
Alignment explanation
Indices: 851002--851120 Score: 177
Period size: 42 Copynumber: 2.8 Consensus size: 42
850992 TTCTTCTCTC
* *
851002 CTCCTCCTGTCATCCCTCCTTTCTCTATTTTCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTTTCTCTCCTGTCT
* *
851044 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTTTCTCTCCTGTCT
*
851086 CTCCTCCTATCATCCCTCCTCTCTCT-TCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTAT-TTTCTCT
851121 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.45
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTATTTTCTCTCCTGTCT
Found at i:851061 original size:12 final size:11
Alignment explanation
Indices: 851035--851110 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
851025 TCTATTTTCT
*
851035 CTCCTGTCTCTC
1 CTCCTATCTC-C
851047 CTCCTATCATCC
1 CTCCTATC-TCC
851059 CTCCTATCT--
1 CTCCTATCTCC
*
851068 CTACTATCT--
1 CTCCTATCTCC
*
851077 CTCCTGTCTCTC
1 CTCCTATCTC-C
851089 CTCCTATCATCC
1 CTCCTATC-TCC
*
851101 CTCCTCTCTC
1 CTCCTATCTC
851111 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:853016 original size:347 final size:347
Alignment explanation
Indices: 852381--853423 Score: 1996
Period size: 347 Copynumber: 3.0 Consensus size: 347
852371 CCATAGATAA
*
852381 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAATAAGTT
1 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
852446 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
66 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
852511 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
131 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
852576 TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
196 TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
852641 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
261 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
852706 ATGGACCTTCCTTGGTTTTCAT
326 ATGGACCTTCCTTGGTTTTCAT
852728 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
1 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
852793 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
66 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
852858 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
131 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
852923 TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
196 TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
852988 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
261 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
*
853053 ATGGACCTTCGTTGGTTTTCAT
326 ATGGACCTTCCTTGGTTTTCAT
853075 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
1 CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
* *
853140 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGTAGGCCCTTTATTACAAAATAACCCAAC
66 TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
*
853205 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGGCTCTTC
131 TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
*
853270 TAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
196 TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
* * *
853335 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCATCAAGTCTTTGTCTTCA
261 TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
*
853400 ACGGACCTTCCTTGGTTTTCAT
326 ATGGACCTTCCTTGGTTTTCAT
853422 CA
1 CA
853424 ACGAGGGAGA
Statistics
Matches: 685, Mismatches: 11, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
347 685 1.00
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.32
Consensus pattern (347 bp):
CACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACTCTTACTTAAACCCAAATAACAAGTT
TTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTTTATTACAAAATAACCCAAG
TCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAATTAACTAGCTTGGACTCTTC
TAACTCCAAATTGGGTCTACTTTCAAATAGGACAGCAACCATCTTCTCTAGGTCTTCCTTTATCC
TCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTTAGGTCTTTGTCTTCA
ATGGACCTTCCTTGGTTTTCAT
Found at i:859532 original size:158 final size:159
Alignment explanation
Indices: 858877--860630 Score: 675
Period size: 159 Copynumber: 11.1 Consensus size: 159
858867 TCTTTTATCC
* * * *
858877 TCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTACTAAAAT
1 TCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATAG-AGATCATTATTAGAAT
* * * * *
858941 CCATATTTATCTCATTTGAG-GCACAAACTTAGACTTCACAAAAATTGGTGGCAAG-AAAGCCTT
65 CCATATTTGTCTCATTTAAGAGCACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAAAGCCTT
* * *
859004 TCTTGTGAAACCAAAGCATCAATATCGTGTA
130 TCTTG-CAAACCAAAACATCAATATCATGTA
* * * * ** * * *** * **
859035 TCCTTATGAGAATACTATGTTTAT-GATGCCTGATCTTGAAAA-GAATGGGGATTGGTATGACTA
1 TCCTAATGAGAAGAATATGTTTATAG-TGCCTAATC-ACAAAATGAATAGAGATCATTATTAGAA
* * * * * *
859098 TTCATATTTGTC-CTATGTAATAG-GCAAACTTTGA-TTCTATCAAAAA-CGGTAGAAAGAAAAG
64 TCCATATTTGTCTC-ATTTAAGAGCACAAACTTTGACTT-TA-CAAAAATTGGTGGAAAGAAAAG
* ** *
859159 -CTATTCTTGCGACACCAATGCATCAATGTCATGTA
126 CCT-TTCTTGC-AAACCAAAACATCAATATCATGTA
* * * * * * * * * **
859194 TCCTAACGA-AACGAATGTATTTTTGGTTCCCAATCAAGAAAAT-AATAGAGA-CTGTTACGAGA
1 TCCTAATGAGAA-GAATATGTTTATAGTGCCTAATC-ACAAAATGAATAGAGATC-ATTATTAGA
* * * * * * *
859256 ATCGATGTTTGTCTTATTTAAAAG-AAAAATTTTGA-TTCTA-AGGAAAATAGG-GGAAAGAAAA
63 ATCCATATTTGTCTCATTTAAGAGCACAAACTTTGACTT-TACA--AAAATTGGTGGAAAGAAAA
* ** * *
859317 G-ATTTCTATGCAAAAGAAAATCCTCAATATCATTTA
125 GCCTTTCT-TGCAAACCAAAA-CATCAATATCATGTA
* * * *
859353 TCCAAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTATTAGAAT
1 TCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATAG-AGATCATTATTAGAAT
* * * * *
859417 CCATATTTGTCTCAATTGAG-GCACGAACTTAGACTTTACAAAAATTGGTAGG-AA-AAAGGCCT
65 CCATATTTGTCTCATTTAAGAGCACAAACTTTGACTTTACAAAAATTGGT-GGAAAGAAAAGCCT
859479 TTCTTGCCAAACCAAAACATCAATATCATGTA
129 TTCTTG-CAAACCAAAACATCAATATCATGTA
* * * * *** * * * *
859511 TCCTATTGAGAAGACTATGTTTATGGAGCCTAATCTAGGGAA-GAATAGGGATTAGTATGT-GTA
1 TCCTAATGAGAAGAATATGTTTATAGTGCCTAATC-ACAAAATGAATAGAGATCATTAT-TAGAA
* * * * *
859574 TTCATGTTTATCTTATTTAAGATC-CAAACTTTGA-TTCTATCAAAAA-TGGTGGAAAGAAAAGC
64 TCCATATTTGTCTCATTTAAGAGCACAAACTTTGACTT-TA-CAAAAATTGGTGGAAAGAAAAGC
* * *
859636 TTTTCTTGCAACACCAAAGCACCAATATCATGTA
127 CTTTCTTGCAA-ACCAAAACATCAATATCATGTA
* ** * * * * * *
859670 TCCTAATGA-AGGGAATGCGTTTTTCA-TTCCCAATCATGAAAAT-AATAGAGAGT-GTTATGAG
1 TCCTAATGAGA-AGAATATGTTTAT-AGTGCCTAATCA-CAAAATGAATAGAGA-TCATTATTAG
* ** * * * * *
859731 AATCGATGCTTGTCTTATTTAAGAG-ATAAACTTTGATTTTAAGAAAAATAGG-GGAAAGAAAAG
62 AATCCATATTTGTCTCATTTAAGAGCACAAACTTTGACTTT-ACAAAAATTGGTGGAAAGAAAAG
* * ** *
859794 -ATTTCCATGCAAAAGAAAATCATCAATATCATTTA
126 CCTTT-CTTGCAAACCAAAA-CATCAATATCATGTA
* * * * *
859829 TCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAACGAAT-GCAGATCATTACTAGAAT
1 TCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATAG-AGATCATTATTAGAAT
* * * * *
859893 CCATATTTGTCTCATTTGAG-GCACGAACTTTGACTTAACAAAAATTAGTGGGAAG-AAAGCCTT
65 CCATATTTGTCTCATTTAAGAGCACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAAAGCCTT
***
859956 TCTTGCGAAACCAAAACATCAATATCGCATA
130 TCTTGC-AAACCAAAACATCAATATCATGTA
* * * * * *
859987 T-CTAAATGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA-AAATAGGGATTAGT-TT-GA
1 TCCT-AATGAGAAGAATATGTTTATAGTGCCTAATCAC--AAAATGAATAGAGATCATTATTAGA
* * * * * ** *
860047 CTATTCAT-TTTCGTGTTATTTAAGAGC-CAACCATTGA-TTCTATCAAAAA-CAGTAGAAAGAA
63 --ATCCATATTT-GTCTCATTTAAGAGCACAAACTTTGACTT-TA-CAAAAATTGGTGGAAAGAA
* * * * *
860108 AAGCTTTTCTTGCGAAACCAAAGCGTCAATGTTATGTA
123 AAGCCTTTCTTGC-AAACCAAAACATCAATATCATGTA
* * * * * ** ***
860146 ACCTAA--AGAAGGGAATGTGTTT-TAGGTTCCCAATCCAGAAAAT-AATAGAGATTGTTGCGAG
1 TCCTAATGAGAA--GAATATGTTTATA-GTGCCTAAT-CACAAAATGAATAGAGATCATTATTAG
** ** * * ** * ** * *
860207 AATTGATGCTTGTC-CTATTTATG-GTATGAACTTTGATTTTA-AGGAAAATAAG-GAAAAGGAA
62 AATCCATATTTGTCTC-ATTTAAGAGCACAAACTTTGACTTTACA--AAAATTGGTGGAAAGAAA
** ** * *
860268 AGATTTTCACGCAAA-AAAGAATCATCAATATCATTTA
124 AGCCTTTCTTGCAAACCAA-AA-CATCAATATCATGTA
* **
860305 TCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAAT-GAAGATCATTACCAGAAT
1 TCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATAG-AGATCATTATTAGAAT
* * * * * * *
860369 TCATGTTTGCCTCATTTAAG-GCATAAACTTAGACTTTACAAAAATTAGTGGGAA-AAAAGCCTT
65 CCATATTTGTCTCATTTAAGAGCACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAAAGCCTT
* * *
860432 TCTTGAGAAACGAAAGCATCAATATCATGTA
130 TCTTG-CAAACCAAAACATCAATATCATGTA
* * * * * * * * * ** *
860463 TCCCT-ATGAGAAGACTTTGTTTATGGTGCCTAATCCCGAAAA-GGATGGGGATTAGTAAGAGTA
1 T-CCTAATGAGAAGAATATGTTTATAGTGCCTAATCAC-AAAATGAATAGAGATCATTATTAGAA
** * * **
860526 TTTATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCAAAAA-CAGTGGAAAGAAAAGC
64 TCCATATTTGTCTCATTTAAGAGCACAAACTTTGACTT-TA-CAAAAATTGGTGGAAAGAAAAGC
* * * *
860588 TTTTTTTG-AGACACCAAAGCATCAATGTCATGTA
127 CTTTCTTGCA-A-ACCAAAACATCAATATCATGTA
860622 TCCTAATGA
1 TCCTAATGA
860631 AGGGAATGTG
Statistics
Matches: 1176, Mismatches: 310, Indels: 219
0.69 0.18 0.13
Matches are distributed among these distances:
156 2 0.00
157 28 0.02
158 422 0.36
159 688 0.59
160 31 0.03
161 5 0.00
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.31
Consensus pattern (159 bp):
TCCTAATGAGAAGAATATGTTTATAGTGCCTAATCACAAAATGAATAGAGATCATTATTAGAATC
CATATTTGTCTCATTTAAGAGCACAAACTTTGACTTTACAAAAATTGGTGGAAAGAAAAGCCTTT
CTTGCAAACCAAAACATCAATATCATGTA
Found at i:860657 original size:476 final size:475
Alignment explanation
Indices: 857511--860664 Score: 3751
Period size: 476 Copynumber: 6.6 Consensus size: 475
857501 GTTGTCATCA
* * * **
857511 CCATGTTTGTCTCATTTAAGACACGAA-TATAGACTTTACAAAAATTGGTGAGAGGAAAGCCTTT
1 CCATGTTTGTCTCATTTGAGGCACGAACT-TAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTT
* * * *** ** *
857575 CTTGCGAAACCAAAGCATCAATATCATGCATCCTTTTGAGAAGACTATGTTTGCAGCACCTACTC
65 CTTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATGTTTATGGTGCCTAATC
* * * *
857640 TTGAAAAGAATTGGGATTAGTATGACTATTCATATTTGTCTTATTTAAGAGACAAACTCTGATTC
130 CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTC
* *
857705 TATCAAAAACGGCAGAAAGAAAAGCTTTCCTT-ACGACACCAAAGCATCAATGTCATGTATCCTA
195 TATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTATCCTA
* * * * * **
857769 ATGAAGGAAATGTGTTTTAGGTTCCCAATCCTA-AAAAGAATGGAGACTGTTATGAGCGTCGATG
259 ATGAAGGGAATGTGTTTTTGGTTCCCAATCC-AGAAAATAATAGAGACTGTTACGAGAATCGATG
* * * *
857833 CTTGTTTTTTTTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAATAGATTTCCATG
323 CTTG-TCTTATTTAA-GGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATG
* * *
857898 CAAAAGTAAATCATCAATATCATTTATCCTATTGAGGAGAATGGGTTTATAGTGCCTAATCACAA
386 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
*
857963 AATTAATGAAGATCATTACTAGAAT
451 AATGAATGAAGATCATTACTAGAAT
** * * *
857988 CCATGTTTGTCTTGTTTGAGGAAAGAACTTAGACTTTACAAAAATTGGTGGGAAAAATGCCTTTC
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * * * * * *
858053 TTGCGAAACCAAAACATTAATATCGTGTAT-CCTAATGAGAAGATTATATTTAAGGTGCCTAGTC
66 TTGCGAAACCAAAGCATCAATATCATGTATCCCT-ATGAGAAGACTATGTTTATGGTGCCTAATC
* ** *
858117 CTGAAAAGAATGGTGATTAGTATGGTTATTCTTGTTTGT-TCTATTTAAGAGACAAACTTTGATT
130 CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCT-TATTTAAGAGACAAACTTTGATT
** * * *
858181 CTATGGAAAACGGCAGAAAGAAAAGCTTTTCTT-ATGGCACCAAAGCATCAATGTCATGTATTCT
194 CTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTATCCT
* * * * *
858245 AATGAAGGGAATGTGTTTTTGGTTCCCAAGCCTGAAAATAATGGAGACTGTTACGAGCATTGATG
258 AATGAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAATAATAGAGACTGTTACGAGAATCGATG
* * *
858310 CTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCAATGAAAAGATTTTGCATG
323 CTTGTCTTATTTAAGG-ATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGA-TTTCCATG
* * * * *
858375 CAAAACAAAATCATAAAAATCATTTAGCCTAATAAGGAGAATGTGTTTATAGTGCCTAATCACAA
386 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
858440 AATGAAGGAAGATCACTACTAGAAT
451 AATGAATGAAGATCATTACTAGAAT
** * *
858465 CCATGTTTGTCTTGTTTGAGGCACGAACTTAGACTTTACAAAAATTGCTGGGAAAAAAAATCCTT
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG--AAAAAAGCCTT
* * * * *
858530 TCTTGTGAAACCAAAGCA-CCA-A--A-GCA-CCTTATGAGAAGACTATGCTTATATAGTGCCTA
64 TCTTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATG-TT-TATGGTGCCTA
* * * * * * * * **
858589 AACCTAAAAAGAATGAGGATTAGTAGGACTATTCATGTTTATCCTATTTACGAGGCCGACTTTGA
127 ATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * * * * *
858654 TTTTATCTAAAATGGTGGAAAGAAAAGCTTTTCTTGCA-ACGCCAAAGCATCAATGTTATGTAAC
192 TTCTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTATC
* * * *** * *
858718 CTAAAGAAGGGAATGTGTTTTAGGTTCCTAATTGTGAAAATAATGGAGACTGTTATGAGAATCGA
256 CTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAATAATAGAGACTGTTACGAGAATCGA
* *
858783 TGCTTATCTTATTTAAGAGATGAACTTTGATTTTAAGGAAAATAGAGAAGAA-AACAA-ATTTCC
321 TGCTTGTCTTATTTAAG-GATGAACTTTGATTTTAAGGAAAATAGGGAA-AAGAA-AAGATTTCC
* * * *
858846 AT-CAAAGGAAAATCATTAACATCTTTTATCCTCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
383 ATGCAAAAGAAAATCATCAATATCATTTA---TCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
*
858910 TCACAAAATGAATGAAGATCATTACTAAAAT
445 TCACAAAATGAATGAAGATCATTACTAGAAT
* * * * * *
858941 CCATATTTATCTCATTTGAGGCACAAACTTAGACTTCACAAAAATTGGTGGCAAGAAAGCCTTTC
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * * * * * *
859006 TTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAATACTATGTTTATGATGCCTGATCT
66 TTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * *
859071 TGAAAAGAATGGGGATTGGTATGACTATTCATATTTGTCCTATGTAATAGGCAAACTTTGATTCT
131 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * * *
859136 ATCAAAAACGGTAGAAAGAAAAGCTATTCTTGCGACACCAATGCATCAATGTCATGTATCCTAAC
196 ATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAAT
** * * *
859201 GAAACGAATGTATTTTTGGTTCCCAATCAAGAAAATAATAGAGACTGTTACGAGAATCGATGTTT
261 GAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAATAATAGAGACTGTTACGAGAATCGATGCTT
* ** * * * *
859266 GTCTTATTTAAAAGAAAAATTTTGATTCTAAGGAAAATAGGGGAAAGAAAAGATTTCTATGCAAA
326 GTCTTATTT-AAGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAA
* * *
859331 AGAAAATCCTCAATATCATTTATCCAAATGGGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
390 AGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
*
859396 AATGAAGATCATTATTAGAAT
455 AATGAAGATCATTACTAGAAT
* * * *
859417 CCATATTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTAGGAAAAAGGCCTTTC
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * *
859482 TTGCCAAACCAAAACATCAATATCATGTAT-CCTATTGAGAAGACTATGTTTATGGAGCCTAAT-
66 TTGCGAAACCAAAGCATCAATATCATGTATCCCTA-TGAGAAGACTATGTTTATGGTGCCTAATC
** * ** * **
859545 CTAGGGAAGAATAGGGATTAGTATGTGTATTCATGTTTATCTTATTTAAGATCCAAACTTTGATT
130 CT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATT
* * * *
859610 CTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCA-ACACCAAAGCACCAATATCATGTATCCT
194 CTATCAAAAACGGTAGAAAGAAAAGCTTTTCTTG-AGACACCAAAGCATCAATGTCATGTATCCT
* ** * *
859674 AATGAAGGGAATGCGTTTTTCATTCCCAAT-CATGAAAATAATAGAGAGTGTTATGAGAATCGAT
258 AATGAAGGGAATGTGTTTTTGGTTCCCAATCCA-GAAAATAATAGAGACTGTTACGAGAATCGAT
* * *
859738 GCTTGTCTTATTTAAGAGATAAACTTTGATTTTAAGAAAAATAGGGGAAAGAAAAGATTTCCATG
322 GCTTGTCTTATTTAAG-GATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATG
*
859803 CAAAAGAAAATCATCAATATCATTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTAATCACAA
386 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* *
859868 AACGAATGCAGATCATTACTAGAAT
451 AATGAATGAAGATCATTACTAGAAT
* * * * *
859893 CCATATTTGTCTCATTTGAGGCACGAACTTTGACTTAACAAAAATTAGTGGGAAGAAAGCCTTTC
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* *** ***
859958 TTGCGAAACCAAAACATCAATATCGCATATCTAAATGAGAAGACTATGTTTATGGTGCCTAATCC
66 TTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * * * *
860023 TGAAAAAAATAGGGATTAGTTTGACTATTCAT-TTTCGTGTTATTTAAGAGCCAACCATTGATTC
131 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTT-GTCTTATTTAAGAGACAAACTTTGATTC
* * * * * *
860087 TATCAAAAACAGTAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCGTCAATGTTATGTAACCTAA
195 TATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAA
* * * * *
860152 AGAAGGGAATGTGTTTTAGGTTCCCAATCCAGAAAATAATAGAGATTGTTGCGAGAATTGATGCT
260 TGAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAATAATAGAGACTGTTACGAGAATCGATGCT
* * * * * *
860217 TGTCCTATTTATGGTATGAACTTTGATTTTAAGGAAAATAAGGAAAAGGAAAGATTTTCACGCAA
325 TGTCTTATTTAAGG-ATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAA
*
860282 AA-AAGAATCATCAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAA
389 AAGAA-AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAA
*
860346 TGAATGAAGATCATTACCAGAAT
453 TGAATGAAGATCATTACTAGAAT
* * * ** *
860369 TCATGTTTGCCTCATTTAAGGCATAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTC
1 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
* * *
860434 TTGAGAAACGAAAGCATCAATATCATGTATCCCTATGAGAAGACTTTGTTTATGGTGCCTAATCC
66 TTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATGTTTATGGTGCCTAATCC
* * * * *
860499 CGAAAAGGATGGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
131 TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
* * *
860564 ATCAAAAACAGTGGAAAGAAAAGCTTTTTTTGAGACACCAAAGCATCAATGTCATGTATCCTAAT
196 ATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAAT
*
860629 GAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAT
261 GAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAAT
860665 GTTGAGGAGA
Statistics
Matches: 2275, Mismatches: 358, Indels: 89
0.84 0.13 0.03
Matches are distributed among these distances:
473 33 0.01
474 39 0.02
475 228 0.10
476 1270 0.56
477 421 0.19
478 215 0.09
479 52 0.02
480 17 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (475 bp):
CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTTTC
TTGCGAAACCAAAGCATCAATATCATGTATCCCTATGAGAAGACTATGTTTATGGTGCCTAATCC
TGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGGTAGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAAT
GAAGGGAATGTGTTTTTGGTTCCCAATCCAGAAAATAATAGAGACTGTTACGAGAATCGATGCTT
GTCTTATTTAAGGATGAACTTTGATTTTAAGGAAAATAGGGAAAAGAAAAGATTTCCATGCAAAA
GAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
ATGAAGATCATTACTAGAAT
Found at i:860965 original size:356 final size:356
Alignment explanation
Indices: 860311--861020 Score: 940
Period size: 356 Copynumber: 2.0 Consensus size: 356
860301 TTTATCCTAA
*
860311 TGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATTCATGTT
1 TGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCATGTT
* * *
860376 TGCCTCATTTAAGGCATAAACTTAGACTTTACAAAAATTAGTGGGAAAAAAGCCTTTCTTGAGAA
66 TGCCTCATCTAAGGCACAAACTTAGACTTCACAAAAATTAGTGGGAAAAAAGCCTTTCTTGAGAA
* * * ** *
860441 ACGAAAGCATCAATATCATGTATCCCTATGAGAAGACTTTGTTTATGGTGCCTAATCCCGAAAAG
131 ACGAAAGCATCAATATCATGCATCCCTATGAGAAGACTATGTTTATAGCACCTAATCCCGAAAAA
* * * * *
860506 GATGGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
196 AATGGAGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAA
* * * *
860571 ACAGTGGAAAGAAAAGCTTTTTTTGAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
261 ACAGTGAAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGAA
* *
860636 ATGTGTTTTTGGTTCCCAATCCTGAAAATGT
326 AAGTGTTTTAGGTTCCCAATCCTGAAAATGT
* * * *
860667 TGAGGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTT
1 TGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCATGTT
* * * *** *
860732 TGTCTCATCTAAGGCACGAACTTAGACTTCACAAAAATTGGTGGGTGGAAAGCCTTTCTTGCGAA
66 TGCCTCATCTAAGGCACAAACTTAGACTTCACAAAAATTAGTGGGAAAAAAGCCTTTCTTGAGAA
* * * * *
860797 ATGAAAGCATTAATATCATGCAT-CCTTTTAGGAAGACTATGTTTATAGCACCTAATCCTGAAAA
131 ACGAAAGCATCAATATCATGCATCCCTATGA-GAAGACTATGTTTATAGCACCTAATCCCGAAAA
* * * ** *
860861 AAATTGAGATTAGTATGACTATTCATGTTTGTTTTATTTAAGAGATTAAGTTTGATTCAAT-AAA
195 AAATGGAGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAA
** * *
860925 AAGTGGTGAAAAGAAATGCTTTTCTT-ACGACACGAAAGCATCAATGTCATGTATCCTAATAAAG
260 AA-CAGTGAAAAGAAAAGCTTTTCTTGA-GACACCAAAGCATCAATGTCATGTATCCTAATAAAG
*
860989 GAAAAGTGTTTTAGGTTCTCAATCCTGAAAAT
323 GAAAAGTGTTTTAGGTTCCCAATCCTGAAAAT
861021 AATGGACACT
Statistics
Matches: 303, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
355 11 0.04
356 292 0.96
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (356 bp):
TGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACCAGAATCCATGTT
TGCCTCATCTAAGGCACAAACTTAGACTTCACAAAAATTAGTGGGAAAAAAGCCTTTCTTGAGAA
ACGAAAGCATCAATATCATGCATCCCTATGAGAAGACTATGTTTATAGCACCTAATCCCGAAAAA
AATGGAGATTAGTAAGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATCAAAA
ACAGTGAAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGAA
AAGTGTTTTAGGTTCCCAATCCTGAAAATGT
Found at i:861441 original size:832 final size:832
Alignment explanation
Indices: 859838--861496 Score: 2190
Period size: 832 Copynumber: 2.0 Consensus size: 832
859828 ATCCTAATGG
*
859838 GGAGAATGTGTTTATAGTGCCTAATCACAAAACGAATGCAGATCATTACTAGAATCCATATTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATATTTGT
* * *
859903 CTCATTTGAGGCACGAACTTTGACTTAACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACC
66 CTCATCTAAGGCACGAACTTAGACTTAACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACC
* **
859968 AAAACATCAATATCGCATATCTAAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAAT
131 AAAACATCAATATCGCATATCTAAATGAGAAGACTATGTTTATAGCACCTAATCCTGAAAAAAAT
* * *
860033 AGGGATTAGTTTGACTATTCATTTTCGTGTTATTTAAGAGCCAACCATTGATTCTATCAAAAACA
196 AGAGATTAGTATGACTATTCATTTTCGTGTTATTTAAGAGCCAACCATTGATTCAATCAAAAACA
* * * * *
860098 GTAGAAAGAAAAGCTTTTCTTGCGAAACCAAAGCGTCAATGTTATGTAACCTAAAGAAGGGAATG
261 GTAGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATGTCATGTAACCTAAAGAAGGAAAAG
* * * * *
860163 TGTTTTAGGTTCCCAATCCAGAAAATAATAGAGATTGTTGCGAGAATTGATGCTTGTCCTATTTA
326 TGTTTTAGGTTCCCAATCCAGAAAATAATAGACACTGTTACGAGAATCGATGCCTGTCCTATTTA
* * * *
860228 TGGTATGAACTTTGATTTTAAGGAAAATAAGGAAAAGGAAAGATTTTCACGCAAAAAAGAATCAT
391 TGGTATGAACTTTAATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCACGCAAAAAAAAATCAT
* * * *
860293 CAATATCATTTATCCTAATGAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATC
456 CAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCAAATCACAAAATGAAAGAAAATC
* * * * *
860358 ATTACCAGAATTCATGTTTGCCTCATTTAAGGCATAAACTTAGACTTTACAAAAATTAGTGGGAA
521 ATTACAAGAATCCATGTTTGCCTCATTTAAGGCACAAACTTAGACTTTACAAAAATCAGTAGGAA
* * * * *
860423 AAAAGCCTTTCTTGAGAAACGAAAGCATCAATATCATGTATCCCTATGAGAAGACTTTGTTTATG
586 AAAAGCCTTTCATCAGAAACCAAAGCATCAATATCATGTATCCCTACGAGAAGACTATGTTTATG
* * *
860488 GTGCCTAATCCCGAAAAGGATGGGGATTAGTAAGAGTATTTATGTTTGTCTTATTTAAGAGACAA
651 GTGCCTAATCCAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACAA
*
860553 ACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTTTTGAGACACCAAAGCATCAATGTCA
716 ACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCA
* * * * * *
860618 TGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCTGAAAATGTTGA
781 TGTAACCGAATGAAGGAAATGTGTTTTAGGTACCCAATCCTAAAAATGTTGA
* * * *
860670 GGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGT
1 GGAGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATATTTGT
* * ** **
860735 CTCATCTAAGGCACGAACTTAGACTTCACAAAAATTGGTGGGTGGAAAGCCTTTCTTGCGAAATG
66 CTCATCTAAGGCACGAACTTAGACTTAACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACC
* * * * *
860800 AAAGCATTAATATCATGCAT-CCT--TTTAGGAAGACTATGTTTATAGCACCTAATCCTGAAAAA
131 AAAACATCAATATC--GCATATCTAAATGA-GAAGACTATGTTTATAGCACCTAATCCTGAAAAA
* * ** **
860862 AATTGAGATTAGTATGACTATTCATGTTT-GTTTTATTTAAGAGATTAA-GTTTGATTCAAT-AA
193 AATAGAGATTAGTATGACTATTCAT-TTTCGTGTTATTTAAGAG-CCAACCATTGATTCAATCAA
** * * * *
860924 AAAGTGGT-GAAAAGAAATGCTTTTCTTACGACACGAAAGCATCAATGTCATGTATCCTAATA-A
256 AAA-CAGTAG-AAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATGTCATGTAACCTAA-AGA
* * * * *
860987 AGGAAAAGTGTTTTAGGTTCTCAATCCTGAAAATAATGGACACTGTTATGAGCATCGATGCCTGT
318 AGGAAAAGTGTTTTAGGTTCCCAATCCAGAAAATAATAGACACTGTTACGAGAATCGATGCCTGT
* ** * * *
861052 CTTATTTATGAG-ATGAACTTTAATTTTTTGGAAAAT-CGAGCATAGAAAAGATTTCCACGCAAA
383 CCTATTTATG-GTATGAACTTTAATTTTAAGGAAAATAAG-GAAAAGAAAAGATTTCCACGCAAA
* * * * *
861115 AAAAAATCATCAGTATCATTTATCCTAATAAGGAGATTGTGTTTATAGTGCCAAATCTCAAAATT
446 AAAAAATCATCAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCAAATCACAAAATG
* * * *
861180 AAAGAAAATCATTACAAGAATCCATGTTTGTCTCATTTGAGGCACAAATTTAGACTTTGCAAAAA
511 AAAGAAAATCATTACAAGAATCCATGTTTGCCTCATTTAAGGCACAAACTTAGACTTTACAAAAA
* * * * *
861245 TCAGTAGGAAGAAAGCCTTTCATCCGAAACCATAGCTTCAATATCATGTATCCTTACGAGAAGAC
576 TCAGTAGGAAAAAAGCCTTTCATCAGAAACCAAAGCATCAATATCATGTATCCCTACGAGAAGAC
* * *
861310 TATGTTTATGGTGCCTAATCTAGAAAAGAATTGGGATTAGTATGAGTATTCATGTTTGTCTTATT
641 TATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATT
*
861375 TAAGAGACAAACTTTGATTCTATCAAAAAC-GATGGAAAGAAAAGCTTTTCTTGCA-ACACGAAA
706 TAAGAGACAAACTTTGATTCTATCAAAAACAG-TGGAAAGAAAAGCTTTTCTTG-AGACACCAAA
861438 GCATCAATGTCATGTAACCGAATGAAGGAAATGTGTTTTAGGTACCCAATCCTAAAAAT
769 GCATCAATGTCATGTAACCGAATGAAGGAAATGTGTTTTAGGTACCCAATCCTAAAAAT
861497 AATGGAGACT
Statistics
Matches: 711, Mismatches: 104, Indels: 24
0.85 0.12 0.03
Matches are distributed among these distances:
831 10 0.01
832 687 0.97
833 10 0.01
834 4 0.01
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (832 bp):
GGAGAATGTGTTTATAGTGCCTAATCACAAAACGAATGAAGATCATTACTAGAATCCATATTTGT
CTCATCTAAGGCACGAACTTAGACTTAACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACC
AAAACATCAATATCGCATATCTAAATGAGAAGACTATGTTTATAGCACCTAATCCTGAAAAAAAT
AGAGATTAGTATGACTATTCATTTTCGTGTTATTTAAGAGCCAACCATTGATTCAATCAAAAACA
GTAGAAAGAAAAGCTTTTCTTACGAAACCAAAGCATCAATGTCATGTAACCTAAAGAAGGAAAAG
TGTTTTAGGTTCCCAATCCAGAAAATAATAGACACTGTTACGAGAATCGATGCCTGTCCTATTTA
TGGTATGAACTTTAATTTTAAGGAAAATAAGGAAAAGAAAAGATTTCCACGCAAAAAAAAATCAT
CAATATCATTTATCCTAATAAGGAGAATATGTTTATAGTGCCAAATCACAAAATGAAAGAAAATC
ATTACAAGAATCCATGTTTGCCTCATTTAAGGCACAAACTTAGACTTTACAAAAATCAGTAGGAA
AAAAGCCTTTCATCAGAAACCAAAGCATCAATATCATGTATCCCTACGAGAAGACTATGTTTATG
GTGCCTAATCCAGAAAAGAATGGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGACAA
ACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGAGACACCAAAGCATCAATGTCA
TGTAACCGAATGAAGGAAATGTGTTTTAGGTACCCAATCCTAAAAATGTTGA
Found at i:861571 original size:476 final size:473
Alignment explanation
Indices: 860669--861776 Score: 1400
Period size: 476 Copynumber: 2.3 Consensus size: 473
860659 GAAAATGTTG
* * * *
860669 AGGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCTTGTTTG
1 AGGAG-ATGTGTTTATAGTGCCTAATCACAAAATTAAAGAAGATCATTACTAGAATCCATGTTTG
* * * ** *
860734 TCTCATCTAAGGCACGAACTTAGACTTCACAAAAATTGGTGGGTGGAAAGCCTTTCTTGCGAAAT
65 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* *
860799 GAAAGCATT-AATATCATGCATCCTTTTAGGAAGACTATGTTTATAGCACCTAATCCTGAAAAAA
130 CAAAGC-TTCAATATCATGTATCC--TTAGGAAGACTATGTTTATAGCACCTAATCCTGAAAAAA
* ** *
860863 ATTGAGATTAGTATGACTATTCATGTTTGTTTTATTTAAGAGATTAAGTTTGATTCAATAAAAAG
192 ATTGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATAAAAAG
* * * * * *
860928 TGGTGAAAAGAAATGCTTTTCTTACGACACGAAAGCATCAATGTCATGTATCCTAATAAAGGAAA
257 CGATGAAAAGAAAAGCTTTTCTTACAACACGAAAGCATCAATGTCATGTAACCGAATAAAGGAAA
* * * * * * *
860993 AGTGTTTTAGGTTCTCAATCCTGAAAATAATGGACACTGTTATGAGCATCGATGCCTGTCTTATT
322 AGTGTTTTAGGTACCCAATCCTAAAAATAATGGACACTATTACGAGAATCAATGCCTGTCTTATT
* * *
861058 TATGAGATGAACTTTAATTTTTTGGAAAATCGAGCATAGAAAAGATTTCCACGCAAAAAAAAATC
387 TAAGAGATGAACTTTAATTTTATGGAAAATAGAGCATAGAAAAGATTTCCACGCAAAAAAAAATC
861123 ATC-AGTATCATTTATCCTAATA
452 ATCTA-TATCATTTATCCTAATA
* * * *
861145 AGGAGATTGTGTTTATAGTGCCAAATCTCAAAATTAAAGAAAATCATTACAAGAATCCATGTTTG
1 AGGAGA-TGTGTTTATAGTGCCTAATCACAAAATTAAAGAAGATCATTACTAGAATCCATGTTTG
* * * ** * * *
861210 TCTCATTTGAGGCACAAATTTAGACTTTGCAAAAATCAGTAGGAAGAAAGCCTTTCATCCGAAAC
65 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAAC
* * ** *
861275 CATAGCTTCAATATCATGTATCCTTACGAGAAGACTATGTTTATGGTGCCTAAT-CTAGAAAAGA
130 CAAAGCTTCAATATCATGTATCCTTA-G-GAAGACTATGTTTATAGCACCTAATCCT-GAAAAAA
* * *
861339 ATTGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAA
192 ATTGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAAT-AAAAA
* * *
861404 -CGATGGAAAGAAAAGCTTTTCTTGCAACACGAAAGCATCAATGTCATGTAACCGAATGAAGGAA
256 GCGATGAAAAGAAAAGCTTTTCTTACAACACGAAAGCATCAATGTCATGTAACCGAATAAAGGAA
* * * *
861468 ATGTGTTTTAGGTACCCAATCCTAAAAATAATGGAGACTATTGCGAGAATCAATGCTTGTCTTAT
321 AAGTGTTTTAGGTACCCAATCCTAAAAATAATGGACACTATTACGAGAATCAATGCCTGTCTTAT
* * * * *
861533 TTAAGGGGTGAACTTTGATTTTATGGAAAATAGAGCATAGAAAAGATTTCCATGCAAAAGAAAAT
386 TTAAGAGATGAACTTTAATTTTATGGAAAATAGAGCATAGAAAAGATTTCCACGCAAAAAAAAAT
*
861598 CATCTATATCATTTATCCTAATG
451 CATCTATATCATTTATCCTAATA
* * *
861621 AGTAGGATGTGTTTGA-AGTGGCTAATCACAAAATGTAAA-AAGATCATTACTAGAATCCATATT
1 AGGA-GATGTGTTT-ATAGTGCCTAATCACAAAAT-TAAAGAAGATCATTACTAGAATCCATGTT
** *
861684 TACCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTTCTTGCGAA
63 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAA
* *
861749 ACCAAAGCATCAATATTATGTATCCTTA
128 ACCAAAGCTTCAATATCATGTATCCTTA
861777 TGAGTGATGA
Statistics
Matches: 536, Mismatches: 86, Indels: 20
0.83 0.13 0.03
Matches are distributed among these distances:
474 3 0.01
475 6 0.01
476 514 0.96
477 13 0.02
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (473 bp):
AGGAGATGTGTTTATAGTGCCTAATCACAAAATTAAAGAAGATCATTACTAGAATCCATGTTTGT
CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
AAAGCTTCAATATCATGTATCCTTAGGAAGACTATGTTTATAGCACCTAATCCTGAAAAAAATTG
AGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCAATAAAAAGCGAT
GAAAAGAAAAGCTTTTCTTACAACACGAAAGCATCAATGTCATGTAACCGAATAAAGGAAAAGTG
TTTTAGGTACCCAATCCTAAAAATAATGGACACTATTACGAGAATCAATGCCTGTCTTATTTAAG
AGATGAACTTTAATTTTATGGAAAATAGAGCATAGAAAAGATTTCCACGCAAAAAAAAATCATCT
ATATCATTTATCCTAATA
Found at i:863429 original size:12 final size:11
Alignment explanation
Indices: 863407--863482 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
863397 AGAGAAAGAA
*
863407 GAGAGAGGAGG
1 GAGATAGGAGG
863418 GATGATAGGAGG
1 GA-GATAGGAGG
*
863430 AGAGAAAGGA--
1 -GAGATAGGAGG
*
863440 GAGATAGTA--
1 GAGATAGGAGG
863449 GAGATAGGAGG
1 GAGATAGGAGG
863460 GATGATAGGAGG
1 GA-GATAGGAGG
*
863472 AGAGACAGGAG
1 -GAGATAGGAG
863483 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:863439 original size:24 final size:24
Alignment explanation
Indices: 863406--863491 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
863396 AAGAGAAAGA
*
863406 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGAAAGGAGGGATGATAGGAGG
*
863430 AGAGAAAGGA--GA-GAT---AGT
1 AGAGAAAGGAGGGATGATAGGAGG
*
863448 AGAGATAGGAGGGATGATAGGAGG
1 AGAGAAAGGAGGGATGATAGGAGG
* * *
863472 AGAGACAGGAGAGATAATAG
1 AGAGAAAGGAGGGATGATAG
863492 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.43, C:0.01, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGAAAGGAGGGATGATAGGAGG
Found at i:863458 original size:42 final size:42
Alignment explanation
Indices: 863397--863515 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
863387 TAGCCCTCAA
* *
863397 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGAAAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGAAAGG
* *
863439 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGAAAGG
* *
863481 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
863516 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.02, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGAAAGG
Found at i:869389 original size:475 final size:474
Alignment explanation
Indices: 868490--869700 Score: 1626
Period size: 475 Copynumber: 2.6 Consensus size: 474
868480 GGTTGTCATC
* * * * *
868490 AATGAGAAAACTATGTTTATGGTGCCTAATCCAGAAAAGAATGGGGATTAGTTTGACTATTTATT
1 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
* * * * *
868555 TTTATGTTATTTAAGAGCTCA-ACTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCTTTTCTTT
66 TTTACGCTATTTAAGAG-GCAGACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* * *** * * * *
868619 CAACACAAAAGCATCAATGTCATGTATTTTAGTGAAGGGAATGTGTTTTAGGATCCTAATCCTAA
130 CGACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGA
* * * * *
868684 AAATAATGGAGACTGTTATGAGAATCAATGCTTGTCTTATTTAGGGGATGAATATTGATTACAAG
195 AAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAG
* * **
868749 GAAATAGGGTAAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAAACTAAT-GAG
260 GAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCG-G
* * *
868813 GAGAATGTGTTTATAGTACCTAATCATAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTC
324 GAGAATGTGTTTATAGT-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTC
*
868878 TCATTTGAGGCACAAACTTAGACTTTGCAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
388 TCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCA
*
868943 AAACATCAATATCGCGTATCCT
453 AAACATCAATATCGTGTATCCT
* * * * *
868965 AATCAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGCATGGGAATTAGTAAGACTATTCATG
1 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
* * * * * *
869030 TTTACGCTATATAAAAGGCAGATTTTGATTCTATCAAAAACGATGGAATGAAAAACTTTTCTTGC
66 TTTACGCTATTTAAGAGGCAGACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* *
869095 GACACCAAAGCATCAATGTCATGTAACCGAATGAAGGGAATGTGTTTTATGTTCCCAATCCTGAA
131 GACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
* *
869160 AATAATGGAGATTGTTACGAGAATCGATGCTTGTCATATTTAAGGGATGAATTTTGATTATAAGG
196 AATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGG
869225 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCGGGA
261 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCGGGA
* * * * *
869290 GAATGTATTTATAGTGCCTAATAAGAAAATGAATGAAGATCATTATTAGAATCAATATTTGTCTC
326 GAATGTGTTTATAGT-CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTC
* * *
869355 ATTTGAGGTACAAACTTAGACTTTACGAAAATTGGTGAGG-AGAAAGCCTTTCTTGTGAAACCAA
390 ATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTG-GGAAGAAAGCCTTTCTTGCGAAACCAA
*
869419 AACATCAATATCGTGTACCCT
454 AACATCAATATCGTGTATCCT
* * *
869440 AATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTTTGACTATTCATG
1 AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
* * * * *
869505 TTTGTC-CTATTAAAGAGGGAGACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTATTG
66 TTT-ACGCTATTTAAGAGGCAGACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG
* * * * * * *
869569 CGACATCAAAGCGTCATTGTCATGTAACCTAATGAAAGGAATGTGTTTTAGGCTCCTAATCATGA
130 CGACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGA
* * * *
869634 AAATAAT-G-GACTGTTACGAGAATCGATGATTCTCTAATTTAAGGGATGAAGTTTGAATT-TAA
195 AAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTG-ATTATAA
869696 GGAAA
259 GGAAA
869701 ATCATCAACA
Statistics
Matches: 643, Mismatches: 88, Indels: 12
0.87 0.12 0.02
Matches are distributed among these distances:
473 49 0.08
474 6 0.01
475 584 0.91
476 4 0.01
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (474 bp):
AATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
TTTACGCTATTTAAGAGGCAGACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
GACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
AATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGG
AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATCGGGA
GAATGTGTTTATAGTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTCA
TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAA
CATCAATATCGTGTATCCT
Found at i:870079 original size:440 final size:436
Alignment explanation
Indices: 869257--879557 Score: 4078
Period size: 475 Copynumber: 22.0 Consensus size: 436
869247 CCATGCAAAA
* * * * * * *
869257 GAAAATCATCAATATCATTTATCCTAATCGGGAGAATGTATTTATAGTGCCTAATAAGAAAATGA
1 GAAAATCATCAAAAACTTTTATCCTAAT-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * * *
869322 ATGAAGATCATTATTAGAATCAATATTTGTCTCATTTGAGGTACAAACTTAGACTTTACGAAAAT
65 ATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAT
* * * * *
869387 TGGTGAG-GAGAAAGCCTTTCTTGTGAAACCAAAACATCAATATCGTGTACCCTAATGAGAAGAC
130 TGGTG-GCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGAC
* * * *
869451 TATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTTTGACTATTCATGTTTGTCCTATT
194 TATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATT
* * * * *
869516 AAAGAGGGAGACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTATTGCGACATCAAAGC
259 TAAGA-GCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGC
* * * *
869581 GTCATTGTCATGTAACCTAATGAAAGGAATGTGTTTTAGGCTCCTAATCATGAAAATAATGGACT
322 ATCAATGTCATGTAACCTAATG-AAGGAATGTGTTTTAGGTTCCCAATCATGAAAATAATGGACT
* *
869646 GTTACGAGAATCGATGATTCTCTAATTTAAGGGATGAAGTTTGAATT-TAAG
386 GTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTG-ATTATAAG
*
869697 GAAAATCATCAACAACTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
1 GAAAATCATCAAAAACTTTTATCCTAAT-AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGA
* * * *
869762 TTAAAGATCATTACTAGAATCGATATTTGTCTTATTTGAGGCATAAACTTAGACTTTACAAAAAT
65 ATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAAT
* * *
869827 TAGTGGCAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACA
130 TGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACT
* * * **
869892 ATATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATTTTTGTGTTATTT
195 ATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTT
* * *
869957 AAGAGCTAAACTTTGATTCTATTAAAAACGGGGGAAAGAGAAGCTTTTCTT-CTGACACAAAAGC
260 AAGAGC-AAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACAC-AAAGC
* * * *
870021 ATCAATGTCATGTATCATAATGAATGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAAA
322 ATCAATGTCATGTAACCTAATGAA-GGAATGTGTTTTAGGTTCCCAATCATGAAAATAATGG--A
** * * * * *
870086 CTGTTATAAGAATTGATGCTTGTCTTATTTATGGGATGAATTTTGATTACAAG
384 CTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTGATTATAAG
* ** * *
870139 GAAATAGGGCAAAAAAAAAGATTTTCACGCAAAAAAAATCATCAATGTCATTTATCCTAACGAGA
1 GAAA-A--TC-ATCAAAAA-CTTTT------------ATC--C----T-A---A---T-AGGAGA
** * * * *
870204 AGTGTGTTTGCCACT-CCTAGTCACAAAATGAACT-AAGATCACTACTAGAATCCATGTTTGTCT
35 A-TGTGTTT-ATAGTGCCTAATCACAAAATGAA-TAAAGATCATTACTAGAATCCATATTTGTCT
* * *
870267 CATTTGAGGCACAAACTTAAACTTTACAAAAATTGGTGGGAAGAAACCCTTTCTTGCGAAACCAA
97 CATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAA
* * *
870332 AGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTAT-G-GCCT-ATCCTAAAAGGGACGG
162 AGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGG
* * * *
870394 GGATTAGTATGAGTATTCATGTTTGTCTTATTTAGGAGACAAACTTCGATTCTATCAAAAACGGT
227 GGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGT
*
870459 GGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCAAT-TCATGTATCCTAATGAAGGGAATGTG
291 GGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTG
* * * *
870523 TTTTTGGTTCCCAATC-TGGAAAATAATGGAGATTGTTACGGGAATCGATGCTTGTCTTATTTAA
354 TTTTAGGTTCCCAATCAT-GAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAA
* *
870587 AGGATGAATTTTGATTATAAAGAAATAGGG
416 GGGATGAAGTTTGATTAT------A-A--G
* * *
870617 AAAAGAAAAGATTTCCATGCAAAAAAATCATCAATATCATTTATCCTAATAGGGACAATGTGTTT
1 ----G-AAA-A--T-CAT-C--AAAAA-C-T---T-T--TAT-C-CTAATA-GGAGAATGTGTTT
* * *
870682 ATAGAGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCA
43 ATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCA
* * * * * * ** * *
870747 CGAACCTAGACTCTACCAAAATTGGTGGGAAGAAAGCTTTTCTTGAAAAACCAAAACATCATTAT
108 CAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
* * * * * *
870812 CGCGTAGCCTAATGAGAAGGCTATGTTTATTGTGCCTAATCTTAAAAAGAATGGGGATTAGTATG
173 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATG
* * * * * *
870877 ACTATTCATGTTTGTCCCATTTAAGAGGGAGACTTGGTTTCTATCAAAAACAGTGGAAAGAAAAG
238 ACTATTCATGTTTGTCCTATTTAAGA-GCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
870942 CTTTTCTTGCGACACCAAAGCATCAATGTCATGTAACCTAATGAAGAGAATGTGTTTTAGGTTCC
302 CTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAAG-GAATGTGTTTTAGGTTCC
* * * * *
871007 TAATCATGGAAAAATTATGGAGACTGTTACGAGAGTTGATGCTGCTCTTATTTAAGGGATGAAGT
365 CAATCAT-G-AAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGT
*
871072 TTGATTTTAAG
426 TTGATTATAAG
* *** * ** ** * * *
871083 GAAAATAGAGT-AGAGAAAAGATT-TCCATCAA-AGGAAAAT-CATCAACA-T-CTTTTATC-C-
1 GAAAAT-CA-TCA-A-AAACTTTTATCC-T-AATAGGAGAATGTGTTTATAGTGC-CTAATCACA
* ** * * * * * *
871140 TAATGAGGAGA-AT-A-TACTGGAATCCATGTTTGTCTTATTTGAGGCATAAATTTAGACTTTAC
59 AAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTAC
* * *
871202 AAAAATTGGTAGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTGTGAG
124 AAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAG
* * * ** * *
871267 AATACTATGTTTAGGGTGCTTAATCCCGAAAATATTGGGGATTAGTATGACTATTCATGTTTGTC
189 AAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTC
* * * * * * *
871332 CTAATTAATAGGCAAACATTGATTCTATCAAAAACAGTGGAAAGAGAAGCTTTTCTTGTGACATA
254 CTATTTAAGA-GCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACA
* * * ** * *
871397 AAGTATCAAGGTTATGTAACCTAGCGAAGGAAACGTGTTTTTGGTTCCCAATCATGAAAATAATG
318 AAGCATCAATGTCATGTAACCTAATGAAGG-AATGTGTTTTAGGTTCCCAATCATGAAAATAAT-
* * * * * ** * * * *
871462 GAGAGTGTTATGAGAACCAATGCTTGTAGTATTTCAGAGATAAACTTTGATTTTAAGAAAAATAG
381 G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTGA--TT-------AT--
871527 GGGAAAG
434 ----AAG
* *** * * * *
871534 AAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTGTCCTAGTGGGGAGAATGTGTTTATA
1 GAAA-A--T-CAT-CAAAA-ACTTTTATC-CTA--A-TAG----G------AGAATGTGTTTATA
* * * * * *
871599 GTGCATAATCACAAAATAAATGAAGATCATTACTAAAATCCATATTTGTCTCAATTGAGGCACGA
46 GTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAA
* * * *
871664 ACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAACATCAATATCAT
111 ACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * * * * * *
871729 ATATCCTAATGGGAAAACTATGTTTATGATGGCTAAT-CTAGAAAAGAAT-AGG----G-AT---
176 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGAC
* *
871784 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCT
240 TATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * *
871849 TTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTTTTGGTTCCCA
304 TTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTGTTTTAGGTTCCCA
* * * * * * *
871914 ATCTTGAAAGA-AATGGAGACTATTACGAGAATTGATGCTTGTCTTATTTAAGAGATAAACTTTG
367 ATCATGAAA-ATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTG
871978 ATTTTATGGAAAATAGGG
429 A--TTAT-----A-A--G
* ** * * *
871996 CAAAGAAAAGATGTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGT
1 ----G-AAA-A--T-CA--T--CA-AAAA-C-T-TTTATC--CTA--ATAG----GAGAATGTGT
* * * *
872061 TTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCTTTTTTGTCACATTTGAGT
41 TTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGG
** * *
872126 CACAAACTCGGACTTTA-AGAAAATTGGTGAG-AAGAAAGTCATTCTTGCGAAACCAAAGCATCA
106 CACAAACTTAGACTTTACA-AAAATTGGTG-GCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
* * * * * *
872189 ATATCGTGTATACTTATGAGAATAATATGCTTATGGTGCCTAAT-CTGGAAAAGAATGGGAATTA
169 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTA
* * * * *
872253 GTATGACTATTCTTATTTGCCCTATTTTAGAAGCAAACTTTGATTTTATCAAAAACGGTGGAAAG
233 GTATGACTATTCATGTTTGTCCTATTTAAG-AGCAAACTTTGATTCTATCAAAAACGGTGGAAAG
* * * * * *
872318 AAAAGCATTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTAACGAAGGGTATGCGTTTTCA
297 AAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTGTTTT-A
* * * * * * *
872383 -GCTCCCAA-CTTGAAAA-AACTAGAGACTATTATGAGAATCAATGCTTGTCTTATTTAAATGG-
359 GGTTCCCAATCATGAAAATAA-T-G-GACTGTTACGAGAATCGATGCTTCTCTTATTT-AAGGGA
* * *
872444 TGAACTTTGATTTTATG
420 TGAAGTTTGATTATAAG
* **
872461 GAAAATAGGGCAATGAAAAGA-TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
1 GAAAAT----C-ATCAAAA-ACTTT---T----------ATC--C--TA--A--TA----GG--A
* * * *
872525 GGAGGATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGT
33 -GA--ATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGT
* *
872590 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACC
95 CTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACC
** * * *
872655 AAAGCATCAATATTTTGTATCCTTATGGGAAGATTTTGTTTATGGTGCCTAAT-CTCAAAAAGAA
160 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAA
* * * * * * *
872719 TGGGGATTAGTGTAAGTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTCCATCAAAAAC
224 TGGGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAAC
* ** * * *
872784 GATGGAAAGAAAAGCTTTT-TTGTAACACCAAAGAATCAATGTCATGTATCCTATTGAAGGGAAT
288 GGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAAT
* * * * * * * *
872848 GTGTTTTTA-GTTCACAATCTTGAAAAGAGTGGAGACTGTTATGAGAATCGATTCTTATCTAATT
351 GTG-TTTTAGGTTCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATT
* *
872912 TAAGAGAT-AGACTTTGATTTTTAGGAAAATAGGGCAAAG
413 TAAGGGATGA-AGTTTGA---TT------AT------AAG
* * *
872951 AAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATG
1 GAAA-A---TCA-TC-----AAAA--A-C----T--TTTATCCTAAT-AGGAGAATGTGTTTATA
* * * * * **
873016 GTGCCT--TCACAAAATGAATTAAGATCTTTACTAGAATCCATGTTTGTCTCATTTAACGCATGA
46 GTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAA
* * * *
873079 ACTTAGACTTTACAAAAATTAGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT
111 ACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * ** * * *
873144 GCATCCTTTTGAGAAGACTATGTTTATAATGCCTACTCTTGAAAAA-AATGGGCATTAGTATGAC
176 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAC
* * * **
873208 --TTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAGAA
240 TATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * * ** * ** * *
873271 TTTCTGGCGATACCAAAGCATCAATGCCATGTATCCTAACAAAGGAAACGCCTTTTCGGTTCCTA
304 TTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAAGG-AATGTGTTTTAGGTTCCCA
* * * * * *** *
873336 AAC-TCGAAAAGATTGGAGACTGTTACGAGAATTGATGCTTATCTTATTTAAGGGGCAAACTTTG
367 ATCAT-GAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTG
* *
873400 ATTTTATG
429 ATTATAAG
** * *
873408 GAAAATAGGGCAAAGAAAAGATTTCCCTGTAAAAGAAAATCATCAGTATCATTTATCCTAATGAG
1 GAAAAT----C-ATCAAAA-ACTT---T-T--------ATC--C----T-A---A---TAG-GAG
* * * * * *
873473 GATGTGCTTATAGTGCCTAATCACAAAATGAATAAAGATGATTAGTAGAATCAATGTTTGTCTCA
34 AATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCA
* *
873538 TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAACCTTTCTTGCGAAACCAAAG
99 TTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAG
* *
873603 CATCAATATTGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAAT-CTCAAAAAGAATGGG
164 CATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGG
* * * * * * * * *
873667 GATTAGTGTGAGT-TTCCACGTTTATCTTAATTAAGAGACAAACTTTGATTAC-ATAAAAAATGA
228 GATTAGTATGACTATT-CATGTTTGTCCTATTTAAGAG-CAAACTTTGATT-CTATCAAAAACGG
* * * *
873730 TAGAAAGAAAAAC-TTTCTTGCGACACCAAAGCATC-ATGTCATGTATCCTATTGAAGGGAATGT
290 TGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGT
* * * * * * * * *
873793 GTTTTTGGTTCACAATCTTGAAAAGAGTGGAGACTATTACGAGAATCGATTCTTGTCTAATTTAA
353 GTTTTAGGTTCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAA
* * *
873858 GAGATAAACTTTGATTTTGAGGAAAATAGGGCAAAG
416 GGGATGAAGTTTGA--TT-------AT------AAG
* * *
873894 AAAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATG
1 GAAA-A---TCA-TC-----AAAA--A-C----T--TTTATCCTAAT-AGGAGAATGTGTTTATA
* * * * * *
873959 GTGCCT-ATCACAAAATGAATGAAGATCATTATTAGAATCCATGTTTGTCTCATTTAATGCACGA
46 GTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAA
* * * * *
874023 ACTTAGACTTTACAAAAATTAGTGGGAGGAAAGCCTTTCTT-TGAAATCAAAGCATCAATATCGT
111 ACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGT
* * *
874087 GCATCCTTATGAGAAGACTA----TA--GTGCCTACTCCTGAAAAA-AATGGGCATTAGTATGAC
176 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGAC
* * * **
874145 --TTCATATTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAA
240 TATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* ** * *
874208 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGCCTTTTCGGTTCCTA
304 TTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAAGG-AATGTGTTTTAGGTTCCCA
* * * * * * * * * *
874273 AACTTGAAAAGACTAGAGATTGTTACAAGAATCGATACTTGTCTTATTTAA-GGAGCGAACTTTG
367 ATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGA-TGAAGTTTG
* *
874337 ATTTTATG
429 ATTATAAG
* *** ** * * *** * * * *
874345 GAAAAT-AGGGCAAAGAAAAGATT-TCCATGCTAGAGAAAATCATCAATATCATTTATCGTAATG
1 GAAAATCA--TC-AA-AAACTTTTATCC-TAATAG-GAGAAT-GTGTTTAT-A-GT-GCCTAATC
* ** * * * * * *
874408 AGGAGGACGTATTTATAG-TGCCTAATTACAAAATAAATGAAGACCATTACTAGAATC-CATGTT
56 A-CAAAATG-A-ATAAAGAT--C--ATTAC----T--A-GAA-TCCA-TATTTG--TCTCAT-TT
* * * * ** * * ****** *****
874471 -TGTCTC--ATTTGAGGCAC-GAACTTAAACTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTG
102 GAGGCACAAACTT-A-G-ACTTTAC-AAAAATTGGTGGCAA-----GA-AAGCCTTT----CTTG
* * * * * * **
874532 TGAAACAAAAGCTTCAATATCGTGTATCATTTTTGAGAAGAC--TGTTAATGGCCCCTAATCCTA
153 CGAAACCAAAGCATCAATATCGTGTATC-CTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA
* * * * * *
874595 AAAAGAATGAGGATTAGTATAACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGAATCAAT
217 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTAT
* * * * * * * *
874660 CAAAAATGGTGTAAAGAAAAGCTTTTCTTACAACCCCAAAGCATCGATGTCATGTATCTTAATGA
281 CAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGA-CACAAAGCATCAATGTCATGTAACCTAATGA
* * * * * ** * *
874725 AGGGAATGAGTTTTAGGTTCCTAATCCTGAAAAAAATGGAGACTATTATAAGCATCGATGCTTGT
345 A-GGAATGTGTTTTAGGTTCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCT
* **
874790 CTTATTTAAGGTATGAACATTGATTTTAAGGAAAATAAGG
407 CTTATTTAAGGGATG-A-A--G--TTT---GATTATAA-G
** * *
874830 CAAAGAAAATTTCCATGCAAAAGAAAATCATCAAATATCATTTATCCTAATGAGGAGAATGTGTT
1 ----GAAAA--T-CAT-C---A-AAAA-C-T--TTTATC--CTA--AT-A---GGAGAATGTGTT
* ** ** *
874895 TATAGTGCCTAATCAGAAAATGAATAAAGATCATTACTAGAATCCATGGTCATCTCATTTAAGGC
42 TATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGC
* * * * *
874960 ACGAACTTAGCCTTTACAAAAATTGGTGAG-AGGAAAGCCTTTCTT--GTAA-C--A-C--CAGT
107 ACAAACTTAGACTTTACAAAAATTGGTG-GCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAAT
* * * * * *
875016 ATCGTGTATCCTAATGAAAAGATTATATTTATGGTGCCTAATCCTAGAAAAAAATTGGGATTAGT
171 ATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGT
* * * * * * *
875081 ATGAGTATTGATGTTTGTCATATTTAAGAGATAAACTTTGATTTTATCAAAAATGGTGGAAAAAA
235 ATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* * ** *
875146 AAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCCTTTTGGGT
299 AAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATG-AAGGAATGTGTTTTAGGT
* * ** * * * *
875211 TCACAATCTTGAAAGGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAAC
362 TCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAG
* *
875276 ATTGATTTTAAG
425 TTTGATTATAAG
* * * ** * * * * * * * *
875288 GAAGATAAGGCAAAGAAAAGATTTA-CATGAAAAAGAAAATCATCAATATCATTTATTG--TAAT
1 GAAAATCA-TC--A-AAAACTTTTATCCT-AATAGGAGAAT-GT--GT-T--TATAGTGCCTAAT
* * ** * ** * * *
875350 GAGGAGATTTTGTTTATAGCGCCAA-ATCAAAAAATGAATGAAGAT-CATTACTAGAATC-CATG
55 CA-CA-A-AATG--AATA-----AAGATC-ATTACT--A-G-A-ATCCA-TATTTG--TCTCAT-
* * *** *** * ** * **** * *** * ***** *
875412 TT-TGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGT
100 TTGAGGC--A-CAAACTTA-G-ACTT-TAC-AAAAATTGGTGGCAAGAAAGCCTTT----CTTGC
* * * *
875476 GAAACCAAAGGATCAATACCATGTATCCTTATGAGAAGAC--TGTTTATGGTGCCTAAT-CTGGA
154 GAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCT-AA
* * * ** * *
875538 AAAGAATGGGGATTAGTTTGACTATTTATTTTTGTGTTATTTAAGAGCCAAACTTTGATTATATA
218 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATC
* * * *
875603 AAAAACGAG-GG-AA-AAAAGCCTTTT-TTGCGATACCGAAGCATCAATGTCATGTATCTTAATG
282 AAAAACG-GTGGAAAGAAAAG-CTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATG
* * * * * *
875664 AGGGGAATACT-TTCTAGGTTCCCAATCCTAAAAACAATGGAGGCTGTTACGAGAATCGATGCTT
344 A-AGGAAT-GTGTTTTAGGTTCCCAATCATGAAAATAATGGA--CTGTTACGAGAATCGATGCTT
* *
875728 GTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
405 CTCTTATTTAAGGGATGAAGTTTGA--TT-------AT------AAG
* ** * * *
875775 AAAAGATTTCCATGCAAAAGAAAGTCATCAATATCTTTTATCCTAATGAAGAGAATGTGTTTATA
1 GAAA-A--T-CAT-C--AA-AAA--C-T-TTTATC--CTA--ATAG----GAGAATGTGTTTATA
* * *
875840 GTG-CTAAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
46 GTGCCT-AATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACA
* * * * * *
875904 AACTTAGACATTACAAAAATTAGCGGGAAGAAACCCTTTCTTGCGAAACCAAACCATCAATATCG
110 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * * * * * *
875969 TTTATCCTTATGAAAAGACTATATTTATAGTGCCTAATCCAAAAAAGAATAGGGATTAGTAAGAG
175 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGAC
* * *
876034 TATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAGCT
240 TATTCATGTTTGTCCTATTTAAGA-GCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCT
* * * **
876099 TTTATTGCAACACGAAAGCATCAATGTCATGTAACCTAATAAAGGGAATGTGTCTTT-GGTTAAC
304 TTTCTTGCGACAC-AAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTGT-TTTAGGTTCCC
* * * * * * * * * *
876163 AATCTTGTAAAGAATGGAGACTGTTACGGGAATCGGTGCTTTTCTAATTTAAGAGATAAACTTTG
366 AATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTG
*
876228 ATTTTAAG
429 ATTATAAG
* * **
876236 GAAAAT-AGGGCGAAGAAAGATTTCCTTGCAAAAGAAAATCTTCAATATTAATTATCCTAATGAG
1 GAAAATCA--TC--A-AAA-ACTT--TT----------ATC--C-----T-A--A---TAGG---
* * * *
876300 GAGAATGTGTGTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTC
32 -AGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTC
* ** * *
876365 TCATTTAAGGCATGAACTTAGACTATACAAAAATTGGTGG-GAGAAAAGCCTTTCTTGC-AATAC
96 TCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAG-AAAGCCTTTCTTGCGAA-AC
* * *
876428 CAAAGCATCAATATCGTTTATCCTTATGAGAAGACTATGTTTATAGTGCCTAATCCTGAAAAGAA
159 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
** * * *
876493 TTAGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAAAGAG-AAACTTTGATTCTATAAAAAA
224 TGGGGATTAGTATGACTATTCATGTTTGTCCTATTT--AAGAGCAAACTTTGATTCTATCAAAAA
* * * * *
876557 TGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGTATCAATGTCATGTATCCTAATAAAGGGAA
287 CGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAA
* * * ** * *
876622 TGTGTTTTAGGTTCTCAATCCTAAAAATAATGGAAACTGTTATAAGCATCGATGCTTGTCTTATT
350 TGTGTTTTAGGTTCCCAATCATGAAAATAATGG--ACTGTTACGAGAATCGATGCTTCTCTTATT
*
876687 TAAGGGATGAAATTTGATTTTTAGGAAAATAGGGCAAAG
413 TAAGGGATGAAGTTTGA---TT------AT------AAG
* * * *
876726 AAAAGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGCGGAGAATGTATTTATA
1 GAAA-A---TCA--T----CAAAA--A-C----T--TTTATCCTAAT-AGGAGAATGTGTTTATA
* * ** * * * * **
876791 GTACCAAATCATGAAATTAA-AGAAAATCATGACTAGAATCCATGTTTGTCTCATTTGAGGCATG
46 GTGCCTAATCACAAAATGAATA-AAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACA
* * *
876855 AACTTAGACTTTACAAAAATTGGTGGGAAGAAACCCTTTCTTGCAAAACCAAAGCATCAATATCG
110 AACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCG
* * * *
876920 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-AGAAGACAATAGGGATTAGTTTGA
175 TGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTA-AAAAGAATGGGGATTAGTATGA
* ** * * * * * *
876984 GTATTCATGTTCATCTTTTTTAAGAG-ACAATTTTGATTCTATTAAAAACAGTGGAAAGAAAAAC
239 CTATTCATGTTTGTCCTATTTAAGAGCA-AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* * * *
877048 TTTTCTTGC-ACACCAAAGCATCAATGTCATGTAACCTAATAAAGGGAATGTATTTTAGATT-CT
303 TTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTGTTTTAGGTTCCC
* *
877111 AATCATGAAAATAATAGA--GATT--GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
366 AATCATGAAAATAATGGACTG-TTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAA----G-
*
877172 TTTTAAGGAAAATTAGAGCAG
425 -TTT---G---ATTATA--AG
877193 AGAACAGATTTCCATGTAAAGGAAAATCATAAACATCTTTTATCCTAATGAGGAGAATGTGTTTA
1 -GAA-A-A--T-C------------ATCA-AAA-A-CTTTTATCCTAAT-AGGAGAATGTGTTTA
* * * * * * *
877258 TAGTGTCTAATCCCAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCGTTTGAGTCAT
44 TAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCAC
* * * *
877323 GAACTTAGACTTTACAAAAATTGGTGGGAA-AAATGCCTTTCTTGTGAAACCAAAACATC-A-AT
109 AAACTTAGACTTTACAAAAATTGGTGGCAAGAAA-GCCTTTCTTGCGAAACCAAAGCATCAATAT
** * * * * *
877385 CGCCTATCCTAATAAGAAGACTATGTTTATGGTGCCTAGTCCCAAAAAGAATGGTGG-TTGGTAT
173 CGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGG-GGATTAGTAT
* * * *
877449 GACTATTCATGTTTGT-CTCATTTAAGAAACGAACTTTGATTCTATCAAAATCGGTGTAAAGAAA
237 GACTATTCATGTTTGTCCT-ATTTAAG-AGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
* * *** *
877513 AGCATTTCTTGCGGCAGCAAAGCATCAATGTCATGTATTTTAATGAAGGGAATGTGTTTTTA-GC
300 AGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTG-TTTTAGGT
** * * * *
877577 TCGTAATCCTGAAAATAATAGAGACTGTTACGAGAATTGATGCTTATCTTATTTAAGGGATGAAT
362 TCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTTAAGGGATGAAG
877642 TTTGATTATAAGGAAATAGGG
425 TTTGATTAT------A-A--G
*
877663 CAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCTGTTATCCTAATGGGGAGAATGTGT
1 ----G-AAA-A---TCAT-C-----AAAA--A-C----T-T-TTATCCTAAT-AGGAGAATGTGT
* *
877728 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGG
41 TTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGG
** * * *
877793 CATGAACTT-GAACTTTACAAAAATTGGTGAG-AA-AAAACCTTTCTGGTGAAACCAAAGCATCA
106 CACAAACTTAG-ACTTTACAAAAATTGGTG-GCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
* *
877855 ATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCCTTAAAAGAATGGGGATTAG
169 ATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAG
* * * * * * * *
877920 TATGAGTATTCATGTTTGTCTTTTTTAAGAGACAAAATATGATTCTATCAAAAACGATGAAAAAA
234 TATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGGTGGAAAGA
* * * *
877985 AAAGC-TTTCTTGTGACACCAAAGCATCAATGTCATATAACCTAATGAAGGGAATGTGTTCTAAG
298 AAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGTGTTTTAGG
* * * * *
878049 TTCGCAATCCTAAAAATAATGGACACTGTTACGAGAATCGATGCTTGTCTTCA-TTATGGGATGA
361 TTCCCAATCATGAAAATAATGG--ACTGTTACGAGAATCGATGCTTCTCTT-ATTTAAGGGATGA
* *
878113 ACTTTGATTTTAAG
423 AGTTTGATTATAAG
* * **
878127 GAAAATAAGGCGAAGGGAAGA-TTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATG
1 GAAAATCA-TC-AA---AA-ACTTT---T-----------ATC--C--TA--A--TA---GGA--
* * * *
878191 AGGAAGATGTGTTTATAGTGCCTAATCACAAAATGATTAAAGATCATTAGTAGAACCCATGTTTG
33 --G-A-ATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTG
* * *
878256 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAAC
94 TCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAAC
* * * * *
878321 TAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGTGCCTAATCTTGAAAAGAA
159 CAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAA
* * *
878386 T-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAAT
224 TGGGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAAC
* * * * * *
878450 GGTGTAGAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
288 GGTGGAAAGAAAAGCTTTTCTTGCGA-CACAAAGCATCAATGTCATGTAACCTAATGAA-GGAAT
* * * ** * * *
878515 GTGTTTTAGGTTCCCAATCCTAAAAAGAATGAAGACAATTATGAGCATCGATGCTTATCTTATTT
351 GTGTTTTAGGTTCCCAATCATGAAAATAATG--GACTGTTACGAGAATCGATGCTTCTCTTATTT
* *
878580 AAGGGATGAACTTTGATTTTAAG
414 AAGGGATGAAGTTTGATTATAAG
878603 GAAAATAGGGCAAAGAAAAGATTTTCGCACAAAAGAAAATCGTCAATATCTTTTATCCTAATGAG
1 GAAAAT----C---------A---T----C-------AA-----AA-A-CTTTTATCCTAAT-AG
* * * *
878668 GAGAATGTGTTTATAGTGCCTAATCACAAAATGATTAAAGATCATTAGTAGAACCCATGTTTGTC
31 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTC
* * * *
878733 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGAAAGCCTTTCTTGCGAAACTA
96 TCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAAAGCCTTTCTTGCGAAACCA
* * * *
878798 AAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGTGCCTAATCTTGAAAAGAATG
161 AAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAATG
* * *
878863 GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAATGG
226 GGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAACGG
* * * * * *
878928 TGTAGAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT
290 TGGAAAGAAAAGCTTTTCTTGCGA-CACAAAGCATCAATGTCATGTAACCTAATGAA-GGAATGT
* * * ** * * *
878993 GTTTTAGGTTCCCAATCCTAAAAAGAATGAAGACAATTATGAGCATCGATGCTTATCTTATTTAA
353 GTTTTAGGTTCCCAATCATGAAAATAATG--GACTGTTACGAGAATCGATGCTTCTCTTATTTAA
* *
879058 GGGATGAACTTTGATTTTAAG
416 GGGATGAAGTTTGATTATAAG
879079 GAAAATAGGGCAAAGAAAAGATTTTCGCACAAAAGAAAATCGTCAATATCTTTTATCCTAATGAG
1 GAAAAT----C---------A---T----C-------AA-----AA-A-CTTTTATCCTAAT-AG
* * * *
879144 GAGAATGTGTTTATAGTGCCTAATCCCAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTC
31 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCATATTTGTC
* ** *
879209 TCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAA-AACAGCCTTTCTTGCGAAACC
96 TCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGCAAGAA-AGCCTTTCTTGCGAAACC
* ** * * * *
879273 AAAACATCAATATCGCCTTTCCTAATGAGAAGACTTTGTTTATGGTGCCT--TCCCT-AAGAGAA
160 AAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAAT-CCTAAAAAGAA
* * * * * *
879335 TGGTGAATGGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAAC
224 TGGGGATTAGTATGACTATTCATGTTTGTCCTATTTAAGAG-CAAACTTTGATTCTATCAAAAAC
* * * *
879400 GGTGGAAAGAAAAGC-TTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGAAAT
288 GGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCAATGTCATGTAACCTAATGAAGG-AAT
* * * * * * * * * *
879464 GTGTTTTTGATTTCCAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATTCTTGTCTAATTT
351 GTGTTTTAGGTTCCCAATCATGAAAATAAT-G-GACTGTTACGAGAATCGATGCTTCTCTTATTT
** * *
879529 AAAAGATTAACTTTGAGTT-TAAG
414 AAGGGATGAAGTTTGA-TTATAAG
879552 GAAAAT
1 GAAAAT
879558 AGGGCAAAGA
Statistics
Matches: 7715, Mismatches: 1362, Indels: 1535
0.73 0.13 0.14
Matches are distributed among these distances:
434 5 0.00
435 9 0.00
436 48 0.01
437 2 0.00
438 54 0.01
439 209 0.03
440 332 0.04
441 10 0.00
442 60 0.01
443 11 0.00
444 15 0.00
445 9 0.00
446 21 0.00
447 14 0.00
448 5 0.00
449 1 0.00
450 10 0.00
451 21 0.00
452 12 0.00
453 8 0.00
454 22 0.00
455 14 0.00
456 23 0.00
457 34 0.00
458 15 0.00
459 25 0.00
460 11 0.00
461 17 0.00
462 9 0.00
463 15 0.00
464 54 0.01
465 49 0.01
466 209 0.03
467 377 0.05
468 305 0.04
469 452 0.06
470 149 0.02
471 330 0.04
472 461 0.06
473 884 0.11
474 509 0.07
475 1466 0.19
476 1065 0.14
477 46 0.01
478 15 0.00
479 5 0.00
480 5 0.00
481 10 0.00
482 6 0.00
483 12 0.00
484 26 0.00
485 18 0.00
486 15 0.00
487 21 0.00
488 4 0.00
489 15 0.00
490 20 0.00
491 23 0.00
492 5 0.00
493 2 0.00
494 9 0.00
495 16 0.00
496 8 0.00
497 11 0.00
498 9 0.00
499 12 0.00
500 6 0.00
501 9 0.00
502 9 0.00
503 11 0.00
504 7 0.00
505 8 0.00
506 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (436 bp):
GAAAATCATCAAAAACTTTTATCCTAATAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
TAAAGATCATTACTAGAATCCATATTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATT
GGTGGCAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
TGTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCTATTTA
AGAGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAGCATCA
ATGTCATGTAACCTAATGAAGGAATGTGTTTTAGGTTCCCAATCATGAAAATAATGGACTGTTAC
GAGAATCGATGCTTCTCTTATTTAAGGGATGAAGTTTGATTATAAG
Found at i:870713 original size:469 final size:467
Alignment explanation
Indices: 869698--871144 Score: 1812
Period size: 469 Copynumber: 3.1 Consensus size: 467
869688 GAATTTAAGG
* * * *
869698 AAAATCATCAACAACTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAT
1 AAAATCATCAACATCATTTATCCTAATG-GGA-AATGTGTTTATAGAGCCTAATCACAAAATGAA
* * *
869763 TAAAGATCATTACTAGAATCGATATTTGTCTTATTTGAGGCATAAACTTAGACTTTACAAAAATT
64 T-AAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCACAAACTTAGACTTTACAAAAATT
* * *
869828 AGTGGCAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACAA
128 GGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* * * *
869893 TATTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTTTGACTATTCATTTTTGTGTTATTTA
193 TGTTTAT-GTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * *
869958 AGAGCTAAACTTTGATTCTATTAAAAACGGGGGAAAGAGAAGCTTTTCTT-CTGACACAAAAGCA
257 AGAGC-AAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC-GACAC-AAAGCA
* * * *
870022 TCAATGTCATGTATCATAATGAATGGAATGTGTTTTAGGTTCCCAATCCT-AAAAATAATGGAAA
319 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAAT-CTGGAAAATAATGGAGA
** * *
870086 CTGTTATAAGAATTGATGCTTGTCTTATTTATGGGATGAATTTTGATTACAAGGAAATAGGGCAA
383 CTGTTACGAGAATTGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAAATAGGG-AA
* * *
870151 AAAAAAAGATTTTCACGCAAAA
447 AAGAAAAGATTTCCATGC-AAA
** * * * ** ** *
870173 AAAATCATCAATGTCATTTATCCTAACGAGAAGTGTGTTTGCCA-CTCCTAGTCACAAAATGAAC
1 AAAATCATCAACATCATTTATCCTAATGGGAAATGTGTTT-ATAGAGCCTAATCACAAAATGAA-
* * * *
870237 TAAGATCACTACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAAACTTTACAAAAATTG
64 TAAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCACAAACTTAGACTTTACAAAAATTG
* *
870302 GTGGGAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
129 GTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTAT
* * * * *
870367 GTTTATG-GCCT-ATCCTAAAAGGGACGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAGG
194 GTTTATGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
870430 AGACAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAGCAAAGCATCA
259 AG-CAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCATCA
* *
870495 AT-TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTGGAAAATAATGGAGATTGT
322 ATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTGGAAAATAATGGAGACTGT
* * * *
870559 TACGGGAATCGATGCTTGTCTTATTTAAAGGATGAATTTTGATTATAAAGAAATAGGGAAAAGAA
387 TACGAGAATTGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAAATAGGGAAAAGAA
870624 AAGATTTCCATGCAAA
452 AAGATTTCCATGCAAA
*
870640 AAAATCATCAATATCATTTATCCTAATAGGGACAATGTGTTTATAGAGCCTAATCACAAAATGAA
1 AAAATCATCAACATCATTTATCCTAAT-GGGA-AATGTGTTTATAGAGCCTAATCACAAAATGAA
* * * *
870705 TGAAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCACGAACCTAGACTCTACCAAAATT
64 T-AAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCACAAACTTAGACTTTACAAAAATT
* * * * * * * *
870770 GGTGGGAAGAAAGCTTTTCTTGAAAAACCAAAACATCATTATCGCGTAGCCTAATGAGAAGGCTA
128 GGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
* **
870835 TGTTTATTGTGCCTAATCTTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCCCATTTA
193 TGTTTA-TGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
* * * * *
870900 AGAGGGAGACTTGGTTTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAT
257 AGA-GCAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CAAAGCAT
* * * *
870965 CAATGTCATGTAACCTAATGAAGAGAATGTGTTTTAGGTTCCTAATCATGGAAAAATTATGGAGA
320 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATC-TGG-AAAATAATGGAGA
* * * * *
871030 CTGTTACGAGAGTTGATGC-TGCTCTTATTTAAGGGATGAAGTTTGATTTTAAGGAAAATAGAGT
383 CTGTTACGAGAATTGATGCTTG-TCTTATTTAAGGGATGAATTTTGATTATAAGG-AAATAGGGA
*
871094 AGAGAAAAGATTTCCAT-CAAA
446 AAAGAAAAGATTTCCATGCAAA
*
871115 GGAAAATCATCAACATCTTTTATCCTAATG
1 --AAAATCATCAACATCATTTATCCTAATG
871145 AGGAGAATAT
Statistics
Matches: 838, Mismatches: 113, Indels: 41
0.84 0.11 0.04
Matches are distributed among these distances:
467 28 0.03
468 24 0.03
469 243 0.29
470 103 0.12
471 11 0.01
472 104 0.12
473 185 0.22
474 9 0.01
475 82 0.10
476 24 0.03
477 25 0.03
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (467 bp):
AAAATCATCAACATCATTTATCCTAATGGGAAATGTGTTTATAGAGCCTAATCACAAAATGAATA
AGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT
GGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
TTATGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
CAAACTTCGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACAAAGCATCAATGT
CATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTGGAAAATAATGGAGACTGTTACG
AGAATTGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAAATAGGGAAAAGAAAAGA
TTTCCATGCAAA
Found at i:872004 original size:159 final size:157
Alignment explanation
Indices: 871159--879641 Score: 1954
Period size: 158 Copynumber: 53.8 Consensus size: 157
871149 GAATATACTG
* * * * *
871159 GAATCCATGTTTGTCTTATTT--GAGGCATAAATTTAGACTTTA-CAAAAATTGGTAGCAAG-AA
1 GAATCCATGTTTGTCTTATTTAAGAGACA-AACTTT-GATTTTATCAAAAATAGG--GAAAGAAA
* ** * * *
871220 AGCCTTTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTTGTGA-GAATACTATGTTTAGGG
62 AGCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAGGGA-A-TGTGTTTATGG
* ** * * * * *
871283 TGCTTAATCCCGAAA-ATATTGGGGATTAGTATGA
124 TGCCTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * * * * * * *
871317 CTATTCATGTTTGTCCTAATTAATAGGCAAACATTGATTCTATCAAAAACAGTGGAAAGAGAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
** * * ** * * ** * * * * *
871382 TTTTCTTGTGACA-TAAAGTATCAAGGTTATGTAACCTAGCGAAGGAAACGTGTTTTTGGTTCCC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCCT
* * * *
871446 AATCATGAAA-ATAATGGAGAGTGTTATGA
129 AATCTTGAAAGA-AATGGAGACTATTACGA
* ** * * **
871475 GAA-CCAATGCTTGTAGTATTTCAGAGATAAACTTTGATTTTAAGAAAAATAGGGGAAAGAAAAG
1 GAATCC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATA-GGGAAAGAAAAG
* * * * ** * * * * * * *
871539 ATTTCCATGCAAAAGAAAATCATCAATATCATTTGTCCTAGTGGGGAGAATGTGTTTATAGTGCA
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
*** * * *
871604 TAATCACAAAATAAATGAAGA-TCATTACTA
128 TAATCTTGAAAGAAATGGAGACT-ATTACGA
* * * * * * * * *
871634 AAATCCATATTTGTCTCAATTGAG-GCACGAACTTAGACTTTA-CAAAAATTAGTGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * * * *
871696 GCCTTTCTTGCGAA-ACCAAAACATCAATATCATATATCCTAATG-GGAAAACTATGTTTATGAT
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAA-TGTGTTTATGGT
* *
871759 GGCTAATC-T---AGAAA---AGA--A-TA-GG
125 GCCTAATCTTGAAAGAAATGGAGACTATTACGA
* * *
871781 GATTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAA
1 GA--ATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAA
* * * *
871846 GCTTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTCTTTTTGGTTC
63 GCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC
*
871911 CCAATCTTGAAAGAAATGGAGACTATTACGA
127 CTAATCTTGAAAGAAATGGAGACTATTACGA
** * * ** *
871942 GAATTGATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAGC
* * * * * ** * * * *
872007 TGTCCATGTAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCT
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCT
*** ** *
872072 AATCACAAAATG-AATAAAGA-TCATTACTA
129 AATCTTGAAA-GAAATGGAGACT-ATTACGA
* * ** * ** ** * *
872101 GAATCCTTTTTTGTCACATTTGAGTCACAAACTCGGACTTTA--AGAAAATTGGTGAGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA-AAAATAGG-GA-AAGAAAA
* * * * ** * *
872163 G-TCATTCTTGCGAA-ACCAAAGCATCAATATCGTGTATACTTATGAGAATAATATGCTTATGGT
63 GCT-TTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGT
* * * *
872226 GCCTAATCTGGAAA-AGAATGG-GAATTAGTATGA
125 GCCTAATCTTGAAAGA-AATGGAG-ACTATTACGA
** * * * * * * **
872259 CTATTCTTATTTGCCCTATTTTAGA-AGCAAACTTTGATTTTATCAAAAACGGTGGAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAG
* * * * * * * *
872323 CATTTCTTGCGACACCAAAGCAACAATGTCATGTATCCTAACGAAGGGTATGCGTTT-TCAGCT-
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT--GGTG
* * *
872386 CCCAA-CTTGAAA-AAACTAGAGACTATTATGA
126 CCTAATCTTGAAAGAAA-TGGAGACTATTACGA
* * *** ** *
872417 GAATCAATGCTTGTCTTATTTAA-ATGGTGAACTTTGATTTTATGGAAAATAGGGCAATGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGA-GACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAG
* * * * ** * * * *
872481 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* * *
872546 TAATCATAAAATG-AATGAAGA-TCATTA-GTA
128 TAATCTTGAAA-GAAATGGAGACT-ATTACG-A
* * * * * * *
872576 GAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* ** * * *
872638 GCCTTTCTTGCGAA-ACCAAAGCATCAATATTTTGTATCCTTATG-GGAAGATTTTGTTTATGGT
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAGG--GAATGTGTTTATGGT
* * * *
872701 GCCTAATC-TCAAAAAGAATGGGGATTAGTGTA--A
125 GCCTAATCTTGAAAGA-AATGGAGACTA-T-TACGA
* * * * ** * *
872734 GTATTCATGTTTGTCTTAATTAAAAGACAAACTTTGATTCCATCAAAAACGATGGAAAGAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAA-TAGGGAAAGAAAAGC
* * * * * * *
872799 TTTT-TTGTAACACCAAAGAATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTAGTTCAC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC-C
* * *
872863 -AATCTTGAAA-AGAGTGGAGACTGTTATGA
128 TAATCTTGAAAGA-AATGGAGACTATTACGA
* * * * *
872892 GAATCGAT-TCTTATCTAATTTAAGAGATAGACTTTGATTTT-T-AGGAAAATAGGGCAAAGAAA
1 GAATCCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTTTATCA--AAAATAGGG-AAAGAAA
* ** * ** * *
872954 AGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTG
62 AGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
*** ** *
873019 CCT--TCACAAAATG-AATTAAGATCT-TTACTA
126 CCTAATCTTGAAA-GAAATGGAGA-CTATTACGA
* * * * * *
873049 GAATCCATGTTTGTCTCATTTAA-CG-CATGAACTTAGACTTTA-CAAAAATTAGTGG-GAGGAA
1 GAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCAAAAA-TAG-GGAAAGAAA
* * * * ** * * * **
873110 AGCCTTTCTTGTGAA-ACCAAAGCATCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATAAT
62 AGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGT
* *
873174 GCCTACTCTTGAAAAAAATGG-G-C-ATTA-GTA
125 GCCTAATCTTGAAAGAAATGGAGACTATTACG-A
* * * * **
873204 TGACTTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGAGGAAAGAAAAG
1 -GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAG
** * * * ** ** * * ** *
873269 AATTTCTGGCGATACCAAAGCATCAATGCCATGTATCCTAACAAAGGAAACGCCTTT-TCGGTTC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAA-TGAGGGAATGTGTTTAT-GGTGC
* * * *
873333 CTAAACTCGAAA-AGATTGGAGACTGTTACGA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * * ** *
873364 GAATTGATGCTTATCTTATTTAAGGGGCAAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAGC
* * * * ** * * * * *
873429 TTTCCCTGTAAAAGAAAATCATCAGTATCATTTATCCTAATGA-GG-ATGTGCTTATAGTGCCTA
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTA
*** **
873492 ATCACAAAATG-AATAAAGA-TGATTA-GTA
130 ATCTTGAAA-GAAATGGAGACT-ATTACG-A
* * * * * * *
873520 GAATCAATGTTTGTCTCATTTGAG-GCACAAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* ** * * * *
873583 -CCTTTCTTGCGAA-ACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACTTTGTTTATGGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
* * * * * **
873646 CCTAATC-TCAAAAAGAATGGGGATTAGTGTGA
126 CCTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * ** * ** *
873678 GTTTCCACGTTTATCTTAATTAAGAGACAAACTTTGATTACATAAAAAATGATAGAAAGAAAAAC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAAT-AGGGAAAGAAAAGC
* * * * *
873743 -TTTCTTGCGACACCAAAGCATC-ATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTTCAC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC-C
*
873806 -AATCTTGAAA-AGAGTGGAGACTATTACGA
128 TAATCTTGAAAGA-AATGGAGACTATTACGA
* * * **
873835 GAATCGAT-TCTTGTCTAATTTAAGAGATAAACTTTGATTTTGA-GGAAAATAGGGCAAAGAAAA
1 GAATCCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTTT-ATCAAAAATAGGG-AAAGAAAA
* ** * ** * *
873898 GATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGC
63 GCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
*** * **
873963 CT-ATCACAAAATG-AATGAAGA-TCATTATTA
127 CTAATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * * * * *
873993 GAATCCATGTTTGTCTCATTTAATG-CACGAACTTAGACTTTA-CAAAAATTAGTGG-GAGGAAA
1 GAATCCATGTTTGTCTTATTTAA-GAGACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * * * ** *
874055 GCCTTTCTTTG-AA-ATCAAAGCATCAATATCGTGCATCCTTATGA--GAA---GACTATAGTGC
63 GCTTTTC-TTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGC
* * *
874113 CTACTCCTGAAAAAAATGG-G-C-ATTA-GTA
127 CTAATCTTGAAAGAAATGGAGACTATTACG-A
* * * * * **
874141 TGACTTCATATTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
1 -GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAG
** * * * ** *
874206 AATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGAAATGCCTTT-TCGGTTC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC
* * * * * *
874270 CTAAACTTGAAA-AGACTAGAGATTGTTACAA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
* ** * **
874301 GAATCGATACTTGTCTTATTTAAG-GAGCGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAG
* * * * * ** * * * * * * *
874365 ATTTCCATGCTAGAGAAAATCATCAATATCATTTATCGTAATGAGGAGGACGTATTTATAGTGCC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
** * * * *
874430 TAAT-TACAAAATAAATGAAGACCATTACTA
128 TAATCT-TGAAAGAAATGGAGACTATTACGA
* * * ** * *
874460 GAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAAACTTTA-CAAAAATTGGTGAGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATAGG-GA-AAGAAAA
* * * * * * ** *
874522 GCCTTTCTTGTGAA-ACAAAAGCTTCAATATCGTGTATCATTTTTGA--GAA-GACTGTTAATGG
63 GCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATC-CTAATGAGGGAATG--TGTTTATGG
** * * * * **
874583 CCCCTAATCCT-AAAAAGAAT-GAGGATTAGTATAA
124 TGCCTAATCTTGAAAGA-AATGGA-GACTATTACGA
** * * * **
874617 CTATTCATATTTGTCTTATTTAAGAGACAAACTTTGAATCAATCAAAAAT-GGTGTAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGG-G-AAAGAAAAG
* * * * * * *
874681 CTTTTCTTACAACCCCAAAGCATCGATGTCATGTATCTTAATGAAGGGAATGAGTTT-TAGGTTC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC
* * **
874745 CTAATCCTGAAAAAAATGGAGACTATTATAA
127 CTAATCTTGAAAGAAATGGAGACTATTACGA
* * * ** * *** *
874776 GCATCGATGCTTGTCTTATTTAAG-GTATGAACATTGATTTTAAGGAAAATAAGGCAAAGAAAA-
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-AGGGAAAGAAAAG
* * * ** * * *
874839 -TTTCCATGCAAAAGAAAATCATCAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
64 CTTTTCTTGCAACACCAAAGCATC-AATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
* ** *
874903 CTAATC-AGAAA-ATGAATAAAGA-TCATTACTA
127 CTAATCTTGAAAGA--AATGGAGACT-ATTACGA
* ** * * * ** * * *
874934 GAATCCATGGTCATCTCATTTAAG-GCACGAACTTAGCCTTTA-CAAAAATTGGTGAGAGGAAAG
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAATAGG-GAAAGAAAAG
* * * ** * * *
874997 CCTTTCTTGTAACACC--AG------TATCGTGTATCCTAATGAAAAGATTATATTTATGGTGCC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGCC
* * * * *
875054 TAATCCTAGAAAAAAATTGG-GATTAGTATGA
128 TAAT-CTTGAAAGAAA-TGGAGACTATTACGA
* ** * * * *
875085 GTATTGATGTTTGTCATATTTAAGAGATAAACTTTGATTTTATCAAAAATGGTGGAAAAAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
* * ** *
875150 TTTTCTTGCAACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATGCCTTT-TGGGTTCA
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC-
*
875214 C-AATCTTGAAAGGAATGGAGACTATTACGA
127 CTAATCTTGAAAGAAATGGAGACTATTACGA
* * ** * *** * *
875244 GAATCGATGCTTGTCTTATTTAAG-GTATGAACATTGATTTTAAGGAAGATAAGGCAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAAT-AGGGAAAGAAAAG
* * * * * ** * * ** * * * *
875308 ATTTACATGAAAAAGAAAATCATCAATATCATTTATTGTAATGAGGAGATTTTGTTTATAGCGCC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
* *** * *
875373 AAATCAAAAAATG-AATGAAGA-TCATTACTA
128 TAATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * * * *
875403 GAATCCATGTTTGTCTTATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * * *
875465 GCCTTTCTTGTGAA-ACCAAAGGATCAATACCATGTATCCTTATGA--GAA-GACTGTTTATGGT
63 GCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATG--TGTTTATGGT
* * * *
875526 GCCTAATCTGGAAA-AGAATGGGGATTAGTT-TGA
125 GCCTAATCTTGAAAGA-AATGGAGACTA-TTACGA
** ** * * * * * *
875559 CTATTTATTTTTGTGTTATTTAAGAGCCAAACTTTGATTATATAAAAAACGAGGG-AA-AAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAA-TAGGGAAAGAAAAG-
* * * * * * *
875622 CTTTT-TTGCGATACCGAAGCATCAATGTCATGTATCTTAATGAGGGGAATACT-TTCTA-GGTT
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGA-GGGAAT-GTGTT-TATGGTG
* * * * *
875684 CCCAATCCT-AAAAACAATGGAGGCTGTTACGA
126 CCTAATCTTGAAAGA-AATGGAGACTATTACGA
* * * ** *
875716 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AAGAAAATAGGGCAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCA-AAAATAGGG-AAAGAAAAG
* * * ** * * * *
875780 ATTTCCATGCAA-AAGAAAGTCATCAATATCTTTTATCCTAATGAAGAGAATGTGTTTATAGTG-
64 CTTTTCTTGCAACACCAAAG-CATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTGC
*** * *
875843 CTAAATCACAAAATG-AATGAAGA-TCATTACTA
127 CT-AATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * * ** *
875875 GAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACATTA-CAAAAATTAGCGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * * * * ** * * * *
875937 CCCTTTCTTGCGAA-ACCAAACCATCAATATCGTTTATCCTTATGAAAAGACTATATTTATAGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTATGGTG
** * * * *
876001 CCTAATC-CAAAAAAGAATAGG-GATTAGTAAGA
126 CCTAATCTTGAAAGA-AAT-GGAGACTATTACGA
* * * * * *
876033 GTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
* * * * * **
876098 TTTTATTGCAACACGAAAGCATCAATGTCATGTAACCTAATAAAGGGAATGTGTCTT-TGGTTAA
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGT-TTATGG-TGC
* *
876162 C-AATCTTGTAAAG-AATGGAGACTGTTACGG
127 CTAATCTTG-AAAGAAATGGAGACTATTACGA
** * * *** *
876192 GAATCGGTGCTTT-TCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCGAAG-AAAG
1 GAATCCATG-TTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAG
* * * ** * * * * *
876255 ATTTCCTTGCAAAAGAAAATCTTCAATATTAAT-TATCCTAATGAGGAGAATGTGTGTATAGTGC
64 CTTTTCTTGCAACACCAAAGCATCAATA-TCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
*** * *
876319 CTAATCACAAAATG-AATGAAGA-TCATTACTA
127 CTAATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * * * * **
876350 GAATCTATGTTTGTCTCATTTAAG-G-CATGAACTTAGACTATA-CAAAAATTGGTGGGAGAAAA
1 GAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCAAAAATAGG-GAAAGAAAA
* * * * * * * * *
876412 GCCTTTCTTGCAATACCAAAGCATCAATATCGTTTATCCTTATGAGAAGACTATGTTTATAGTGC
63 GCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTGC
* * * * * *
876477 CTAATCCTGAAAAGAATTAG-GATTAGTATGA
127 CTAATCTTG-AAAGAAATGGAGACTATTACGA
** * * * * * * *
876508 CTATTCAAGTTTGTCTTATTTAAAAGAGAAACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
* * * * * *
876573 TTTTCTTACGACACCAAAGTATCAATGTCATGTATCCTAATAAAGGGAATGTGTTT-TAGGT-TC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTAT-GGTGCC
* * * * **
876636 TCAATCCT-AAAAATAATGGAAACTGTTATAA
128 T-AATCTTGAAAGA-AATGGAGACTATTACGA
* * * * *
876667 GCATCGATGCTTGTCTTATTTAAGGGATGAAA-TTTGATTTT-T-AGGAAAATAGGGCAAAGAAA
1 GAATCCATGTTTGTCTTATTTAAGAGA-CAAACTTTGATTTTATCA--AAAATAGGG-AAAGAAA
* * * * ** * * * * * *
876729 AGATTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGCGGAGAATGTATTTATAGTA
62 AGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTG
* * * * * * *
876794 CCAAATCATGAAATTAAA--GAAAATCATGACTA
126 CCTAATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * * * *
876826 GAATCCATGTTTGTCTCATTT--GAGGCATGAACTTAGACTTTA-CAAAAATTGGTGGGAAG-AA
1 GAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCAAAAA-TAG-GGAAAGAAA
* * * * * * * *
876887 ACCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
62 AGCTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
** * *
876952 CCTAATCCAG-AAGACAATAGG-GATTAGTT-TGA
126 CCTAATCTTGAAAGA-AAT-GGAGACTA-TTACGA
* * ** * * * * * *
876984 GTATTCATGTTCATCTTTTTTAAGAGAC-AATTTTGATTCTATTAAAAACAGTGGAAAGAAAAAC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
* * * * * *
877048 TTTTCTTGC-ACACCAAAGCATCAATGTCATGTAACCTAATAAAGGGAATGTATTT-TAGAT-TC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTAT-GGTGCC
* *
877110 TAATCATGAAA-ATAAT--AGA-GATT--GA
128 TAATCTTGAAAGA-AATGGAGACTATTACGA
* * * ** ** * * * *
877135 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATTAGAGCAGAGAACAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTT-ATCAAAAATAG-GGAAAGAAAAG
* * * * ** * * * * * * *
877200 ATTTCCATGTAA-AGGAAAATCATAAACATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGT
64 CTTTTCTTGCAACA-CCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGC
*** * *
877264 CTAATCCCAAAATG-AATGAAGA-TCATTACTA
127 CTAATCTTGAAA-GAAATGGAGACT-ATTACGA
** * * * * *
877295 GAATCCATGTTTGTCTCGTTT--GAGTCATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AAA
1 GAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTGATTTTATCAAAAA-TAG-GGAAAGAAA
* * * * *** * * * *
877356 TGCCTTTCTTGTGAA-ACCAAAACATC-A-ATCGCCTATCCTAATAAGAAGACTATGTTTATGGT
62 AGCTTTTCTTG-CAACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGT
* ** * * ** ** *
877418 GCCTAGTC-CCAAAAAGAATGGTGGTTGGTATGA
125 GCCTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * * * *
877451 CTATTCATGTTTGTCTCATTTAAGAAACGAACTTTGATTCTATC-AAAATCGGTGTAAAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGG-G-AAAGAAAAG
* ** * * ** * *
877515 CATTTCTTGCGGCAGCAAAGCATCAATGTCATGTATTTTAATGAAGGGAATGTGTTTTTAGCT-C
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC
* * * *
877579 GTAATCCTGAAA-ATAATAGAGACTGTTACGA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * ** *
877610 GAATTGATGCTTATCTTATTTAAGGGATGAATTTTGA--TTAT-AAGGAAATAGGGCAAAGAAAA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAA--AAATAGGG-AAAGAAAA
* * * ** * * *
877672 GATTTTCATGCAAAAGAAAATCATCAATATC-TGTTATCCTAATGGGGAGAATGTGTTTATAGTG
63 GCTTTTCTTGCAACACCAAAGCATCAATATCATG-TATCCTAATGAGG-GAATGTGTTTATGGTG
*** * *
877736 CCTAATCACAAAATG-AATGAAGA-TCATTACTA
126 CCTAATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * *
877768 GAATCCATGTTTGTCTCATTT--GAGGCATGAAC-TTGAACTTTA-CAAAAATTGGTGAGAA-AA
1 GAATCCATGTTTGTCTTATTTAAGAGACA--AACTTTG-ATTTTATCAAAAATAGG-GA-AAGAA
* * * * * *
877828 AA-CCTTTCTGGTG-AA-ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATG
61 AAGCTTTTCT--TGCAACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATG
* * * * *
877890 GTGCCTAATCCTTAAAAG-AATGGGGATTAGTATGA
123 GTGCCTAAT-CTTGAAAGAAATGGAGACTATTACGA
* * * * * * * * * *
877925 GTATTCATGTTTGTCTTTTTTAAGAGACAAAATATGATTCTATCAAAAACGATGAAAAAAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAA-TAGGGAAAGAAAAGC
** * * * * *
877990 -TTTCTTGTGACACCAAAGCATCAATGTCATATAACCTAATGAAGGGAATGTGTTCTA-AGTTCG
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTT-TATGGTGC-
* * * *
878053 C-AATCCT-AAAAATAATGGACACTGTTACGA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
* * * * ** *** **
878083 GAATCGATGCTTGTCTTCA-TTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCG-AAGGGAA
1 GAATCCATGTTTGTCTT-ATTTAAGAGACAAACTTTGATTTTATCAAAAAT-AGG-GAAAGAAAA
* * * * ** * * * *
878146 GATTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAAGATGTGTTTATAGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAGGGA-ATGTGTTTATGGTG
*** * **
878211 CCTAATCACAAAATG-ATTAAAGA-TCATTA-GTA
126 CCTAATCTTGAAA-GAAATGGAGACT-ATTACG-A
* * * * * * *
878243 GAACCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTAGTGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * ** * * * *
878305 GCCTTTCTTGCGAA-ACTAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
* * *
878369 CCTAATCTTGAAA-AGAATGG-GATTAGTATGA
126 CCTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * *
878400 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAAT-GGTGTAGAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGG-G-AAAGAAAAG
* * * *
878464 CTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TAGGTTC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC
* * * * * *
878528 CCAATCCT-AAAAAGAATGAAGACAATTATGA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
* * * * * ** *** *
878559 GCATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAGC
*** * ** * * * * *
878624 TTTTCGCACAAAAGAAAATCGTCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCT
*** * **
878689 AATCACAAAATG-ATTAAAGA-TCATTA-GTA
129 AATCTTGAAA-GAAATGGAGACT-ATTACG-A
* * * * * * *
878718 GAACCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTTTA-CAAAAATTAGTGGGAAG-AAA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * * ** * * * *
878780 GCCTTTCTTGCGAA-ACTAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
* * * *
878844 CCTAATCTTGAAA-AGAATGGGGATTAGTATGA
126 CCTAATCTTGAAAGA-AATGGAGACTATTACGA
** * * * *
878876 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAAT-GGTGTAGAGAAAAG
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGG-G-AAAGAAAAG
* * * *
878940 CTTTTCTTACAACCCCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT-TAGGTTC
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATG-AGGGAATGTGTTTAT-GGTGC
* * * * * *
879004 CCAATCCT-AAAAAGAATGAAGACAATTATGA
127 CTAATCTTGAAAGA-AATGGAGACTATTACGA
* * * * * ** *** *
879035 GCATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAGC
*** * ** * * * * *
879100 TTTTCGCACAAAAGAAAATCGTCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCCT
*** * *
879165 AATCCCAAAATG-AATGAAGA-TCATTACTA
129 AATCTTGAAA-GAAATGGAGACT-ATTACGA
* * * ** * * * * *
879194 GAATCTATGTTTGTCTCATTTGAG-GTATGAACTTAGACTTTA-CAAAAATTGGTGGGAA-AACA
1 GAATCCATGTTTGTCTTATTTAAGAG-ACAAACTTTGATTTTATCAAAAA-TAG-GGAAAGAAAA
* * *** * * * *
879256 GCCTTTCTTGCGAA-ACCAAAACATCAATATCGCCTTTCCTAATGAGAAGACTTTGTTTATGGTG
63 GCTTTTCTTGC-AACACCAAAGCATCAATATCATGTATCCTAATGAG-GGAATGTGTTTATGGTG
* * * *** *
879320 CCT--TCCCT--AAGAGAATGGTGAATGGCATGA
126 CCTAAT-CTTGAAAGA-AATGGAGACTATTACGA
** * ** **
879350 CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAACGGTGGAAAGAAAAGC
1 GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAG-GGAAAGAAAAGC
** * * * * * * *
879415 -TTTCTTGTGACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGAAATGTGTTTTTGATTTCC
65 TTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAAT-GAGGGAATGTGTTTATG-GTGCC
* * *
879479 -AATCTTGAAA-AGAATGGAGATTGTTATGA
128 TAATCTTGAAAGA-AATGGAGACTATTACGA
* * * ** * ***
879508 GAATCGAT-TCTTGTCTAATTTAAAAGATTAACTTTGAGTTTAAGGAAAATAGGGCAAAGAAAAG
1 GAATCCATGT-TTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGG-AAAGAAAAG
* * * * ** * * * * *
879572 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCG
64 CTTTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGG-GAATGTGTTTATGGTGCC
879637 TAATC
128 TAATC
879642 ACAAAATGAA
Statistics
Matches: 5858, Mismatches: 1934, Indels: 1065
0.66 0.22 0.12
Matches are distributed among these distances:
147 1 0.00
148 8 0.00
149 77 0.01
150 121 0.02
151 98 0.02
152 52 0.01
153 30 0.01
154 48 0.01
155 103 0.02
156 451 0.08
157 725 0.12
158 1986 0.34
159 1883 0.32
160 260 0.04
161 15 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (157 bp):
GAATCCATGTTTGTCTTATTTAAGAGACAAACTTTGATTTTATCAAAAATAGGGAAAGAAAAGCT
TTTCTTGCAACACCAAAGCATCAATATCATGTATCCTAATGAGGGAATGTGTTTATGGTGCCTAA
TCTTGAAAGAAATGGAGACTATTACGA
Found at i:872536 original size:475 final size:473
Alignment explanation
Indices: 871154--879738 Score: 10253
Period size: 475 Copynumber: 18.2 Consensus size: 473
871144 GAGGAGAATA
* * ** * * *
871154 TACTGGAATCCATGTTTGTCTTATTTGAGGCATAAATTTAGACTTTACAAAAATTGGTAGCAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * *
871219 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTTGTGAGAATACTATGTTTAGGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * * * *
871284 GCTTAATCCCGAAAATATTGGGGATTAGTATGACTATTCATGTTTGTCCTAATTAATAGGCAAAC
131 GCCTAATCTCGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * * * *
871349 ATTGATTCTATCAAAAACAGTGGAAAGAGAAGCTTTTCTTGTGACA-TAAAGTATCAAGGTTATG
195 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* ** * * * * * *
871413 TAACCTAGCGAAGGAAACGTGTTTTTGGTTCCCAATCATGAAAATAATGGAGAGTGTTATGAGAA
260 TATCCTAATGAAGGGAATGTG-TTTTAGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAA
* * ** * * * * *
871478 CCAATGCTTGTAGTATTTCAGAGATAAACTTTGATTTTAAGAAAAATAGGGGAAAGAAAAGATTT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
871543 CCATGCAAAAGAAAATCATCAATATCATTTGTCCTAGTGGGGAGAATGTGTTTATAGTGCATAAT
388 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
*
871608 CACAAAATAAATGAAGATCAT
453 CACAAAATGAATGAAGATCAT
* * * *
871629 TACTAAAATCCATATTTGTCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * * * * *
871694 AAGCCTTTCTTGCGAAACCAAAACATCAATATCATATATCCTAATGGGAAAACTATGTTTATGAT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * *
871759 GGCTAATCTAGAAAAGAATAGG----G-AT---TATTCATGTTTGTCTTATTTAAGAGACAAACT
131 GCCTAATCTCGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* *
871816 TTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGT
196 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * *
871881 ATCCTAATGAAGGGAATGTCTTTTTGGTTCCCAATCTTGAAAGAAATGGAGACTATTACGAGAAT
261 ATCCTAATGAAGGGAATGT-GTTTTAGTTCCCAATCTTGAAA-AAATGGAGACTGTTACGAGAAT
* * * * *
871946 TGATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATGTC
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTC
* *
872011 CATGTAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATC
389 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATC
*
872076 ACAAAATGAATAAAGATCAT
454 ACAAAATGAATGAAGATCAT
* * * * * ** *
872096 TACTAGAATCCTTTTTTGTCACATTTGAGTCACAAACTCGGACTTTA-AGAAAATTGGTGAGAAG
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA-AAAATTGGTGGGAAG
* * * * * *
872160 AAAGTCATTCTTGCGAAACCAAAGCATCAATATCGTGTATACTTATGAGAATAATATGCTTATGG
65 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * *
872225 TGCCTAATCTGGAAAAGAATGGGAATTAGTATGACTATTCTTATTTGCCCTATTTTAGA-AGCAA
130 TGCCTAATCTCGAAAAGAATGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA-CAA
* * *
872289 ACTTTGATTTTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCAACAATGTCA
193 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * *
872354 TGTATCCTAACGAAGGGTATGCGTTTTCAGCTCCCAA-CTTGAAAAAACTAGAGACTATTATGAG
258 TGTATCCTAATGAAGGGAATGTGTTTT-AGTTCCCAATCTTGAAAAAA-TGGAGACTGTTACGAG
* * * *
872418 AATCAATGCTTGTCTTATTTAAATGG-TGAACTTTGATTTTATGGAAAATAGGGCAATGAAAAGA
321 AATCGATGCTTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
*
872482 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCT
385 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
*
872547 AATCATAAAATGAATGAAGATCAT
450 AATCACAAAATGAATGAAGATCAT
*
872571 TAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
** * * *
872636 AAGCCTTTCTTGCGAAACCAAAGCATCAATATTTTGTATCCTTATGGGAAGATTTTGTTTATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * *
872701 GCCTAATCTCAAAAAGAATGGGGATTAGTGTAAGTATTCATGTTTGTCTTAATTAAAAGACAAAC
131 GCCTAATCTCGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * ** *
872766 TTTGATTCCATCAAAAACGATGGAAAGAAAAGCTTTT-TTGTAACACCAAAGAATCAATGTCATG
195 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * *
872830 TATCCTATTGAAGGGAATGTGTTTTTAGTTCACAATCTTGAAAAGAGTGGAGACTGTTATGAGAA
260 TATCCTAATGAAGGGAATGTG-TTTTAGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAA
* * * * *
872895 TCGATTCTTATCTAATTTAAGAGAT-AGACTTTGATTTTTAGGAAAATAGGGCAAAGAAAAGATT
323 TCGATGCTTGTCTTATTTAAGGGATGA-ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * *
872959 TTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCT--
387 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
873022 TCACAAAATGAATTAAGATCTT
452 TCACAAAATGAATGAAGATCAT
* * * * *
873044 TACTAGAATCCATGTTTGTCTCATTTAACGCATGAACTTAGACTTTACAAAAATTAGTGGGAGGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * **
873109 AAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATAAT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * *
873174 GCCTACTCTTGAAAAAAATGGGCATTAGTATGAC--TTCATATTTGTCTTATTTAAGAGACAAAC
131 GCCTAATCTCGAAAAGAATGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* ** * * *
873237 TTTGATTCTATCAAAAACGGAGGAAAGAAAAGAATTTCTGGCGATACCAAAGCATCAATGCCATG
195 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
** * * ** * * * * *
873302 TATCCTAACAAAGGAAACGCCTTTTCGGTTCCTAAACTCGAAAAGATTGGAGACTGTTACGAGAA
260 TATCCTAATGAAGGGAATGTGTTTT-AGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAA
* * *** *
873367 TTGATGCTTATCTTATTTAAGGGGCAAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
* * * *
873432 CCCTGTAAAAGAAAATCATCAGTATCATTTATCCTAATGA-G-G-ATGTGCTTATAGTGCCTAAT
388 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAAT
* *
873494 CACAAAATGAATAAAGATGAT
453 CACAAAATGAATGAAGATCAT
* * *
873515 TAGTAGAATCAATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * *
873580 AAACCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTTATGAGAAGACTTTGTTTATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * *
873645 GCCTAATCTCAAAAAGAATGGGGATTAGTGTGAGT-TTCCACGTTTATCTTAATTAAGAGACAAA
131 GCCTAATCTCGAAAAGAAT-GGGATTAGTATGACTATT-CATGTTTGTCTTATTTAAGAGACAAA
* * * * *
873709 CTTTGATTAC-ATAAAAAATGATAGAAAGAAAAAC-TTTCTTGCGACACCAAAGCATC-ATGTCA
194 CTTTGATT-CTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * *
873771 TGTATCCTATTGAAGGGAATGTGTTTTTGGTTCACAATCTTGAAAAGAGTGGAGACTATTACGAG
258 TGTATCCTAATGAAGGGAATGTG-TTTTAGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAG
* * * * *
873836 AATCGATTCTTGTCTAATTTAAGAGATAAACTTTGATTTTGAGGAAAATAGGGCAAAGAAAAGAT
321 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * *
873901 TTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATGGTGCCT-
386 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
873965 ATCACAAAATGAATGAAGATCAT
451 ATCACAAAATGAATGAAGATCAT
* * * * *
873988 TATTAGAATCCATGTTTGTCTCATTTAATGCACGAACTTAGACTTTACAAAAATTAGTGGGAGGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * *
874053 AAGCCTTTCTT-TGAAATCAAAGCATCAATATCGTGCATCCTTATGAGAAGACTA----TA--GT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * *
874111 GCCTACTC-CTGAAAAAAATGGGCATTAGTATGAC--TTCATATTTTTCTTATTTAAGAGACAAA
131 GCCTAATCTC-GAAAAGAATGGG-ATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
**
874173 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGAATTTCTTGCGACACCAAAGCATCAATGTCAT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* ** * * * * * * *
874238 GTATCCTAATGAAGGAAATGCCTTTTCGGTTCCTAAACTTGAAAAGACTAGAGATTGTTACAAGA
259 GTATCCTAATGAAGGGAATGTGTTTT-AGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGA
* * *
874303 ATCGATACTTGTCTTATTTAA-GGAGCGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGAT
322 ATCGATGCTTGTCTTATTTAAGGGA-TGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
* * * * * *
874367 TTCCATGCTAGAGAAAATCATCAATATCATTTATCGTAATGAGGAGGACGTATTTATAGTGCCTA
386 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
* * *
874432 ATTACAAAATAAATGAAGACCAT
451 ATCACAAAATGAATGAAGATCAT
* *
874455 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAAACTTTACAAAAATTGGTGAGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * * * *
874520 AAGCCTTTCTTGTGAAACAAAAGCTTCAATATCGTGTATCATTTTTGAGAAGAC--TGTTAATGG
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATC-CTTATGAGAAGACTATGTTTATGG
** * * *
874583 CCCCTAATC-CTAAAAAGAATGAGGATTAGTATAACTATTCATATTTGTCTTATTTAAGAGACAA
130 TGCCTAATCTC-GAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * * * *
874647 ACTTTGAATCAATCAAAAATGGTGTAAAGAAAAGCTTTTCTTACAACCCCAAAGCATCGATGTCA
193 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * **
874712 TGTATCTTAATGAAGGGAATGAGTTTTAGGTTCCTAATCCTGAAAAAAATGGAGACTATTATAAG
258 TGTATCCTAATGAAGGGAATGTGTTTTA-GTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAG
* * * *
874777 CATCGATGCTTGTCTTATTTAAGGTATGAACATTGATTTTAAGGAAAATAAGGCAAAG-AAA-AT
321 AATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGAT
874840 TTCCATGCAAAAGAAAATCATCAAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
386 TTCCATGCAAAAGAAAATCATC-AATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* *
874905 AATCAGAAAATGAATAAAGATCAT
450 AATCACAAAATGAATGAAGATCAT
* ** * * * *
874929 TACTAGAATCCATGGTCATCTCATTTAAGGCACGAACTTAGCCTTTACAAAAATTGGTGAGAGGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * * * *
874994 AAGCCTTTCTT--GTAA-C--A-C--CAGTATCGTGTATCCTAATGAAAAGATTATATTTATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * *
875051 GCCTAATCCTAGAAAAAAATTGGGATTAGTATGAGTATTGATGTTTGTCATATTTAAGAGATAAA
131 GCCTAAT-CTCGAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
875116 CTTTGATTTTATCAAAAATGGTGGAAAAAAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCAT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* ** * * * *
875181 GTATCCTAATGAAAGGAATGCCTTTTGGGTTCACAATCTTGAAAGGAATGGAGACTATTACGAGA
259 GTATCCTAATGAAGGGAATGTGTTTT-AGTTCCCAATCTTGAAA-AAATGGAGACTGTTACGAGA
* * * *
875246 ATCGATGCTTGTCTTATTTAAGGTATGAACATTGATTTTAAGGAAGATAAGGCAAAGAAAAGATT
322 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * ** * * * *
875311 TACATGAAAAAGAAAATCATCAATATCATTTATTGTAATGAGGAGATTTTGTTTATAGCGCCAAA
387 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
*
875376 TCAAAAAATGAATGAAGATCAT
452 TCACAAAATGAATGAAGATCAT
*
875398 TACTAGAATCCATGTTTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * *
875463 AAGCCTTTCTTGTGAAACCAAAGGATCAATACCATGTATCCTTATGAGAAGAC--TGTTTATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * * *
875526 GCCTAATCTGGAAAAGAATGGGGATTAGTTTGACTATTTATTTTTGTGTTATTTAAGAGCCAAAC
131 GCCTAATCTCGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * *
875591 TTTGATTATATAAAAAACGAG-GG-AA-AAAAGCCTTTT-TTGCGATACCGAAGCATCAATGTCA
195 TTTGATTCTATCAAAAACG-GTGGAAAGAAAAG-CTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * *
875652 TGTATCTTAATGAGGGGAATACT-TTCTAGGTTCCCAATCCTAAAAACAATGGAGGCTGTTACGA
258 TGTATCCTAATGAAGGGAAT-GTGTTTTA-GTTCCCAATCTTGAAAA-AATGGAGACTGTTACGA
*
875716 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGA
320 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * *
875781 TTTCCATGCAAAAGAAAGTCATCAATATCTTTTATCCTAATGAAGAGAATGTGTTTATAGTG-CT
385 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
875845 AAATCACAAAATGAATGAAGATCAT
450 -AATCACAAAATGAATGAAGATCAT
* * *
875870 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACATTACAAAAATTAGCGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * * * * *
875935 AACCCTTTCTTGCGAAACCAAACCATCAATATCGTTTATCCTTATGAAAAGACTATATTTATAGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * *
876000 GCCTAATC-CAAAAAAGAATAGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAGAGGCAAA
131 GCCTAATCTC-GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
876064 CTTTGATTCTATCAAAAACAGTGAAAAGAAAAGCTTTTATTGCAACACGAAAGCATCAATGTCAT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * ** * *
876129 GTAACCTAATAAAGGGAATGTGTCTTTGGTTAACAATCTTGTAAAGAATGGAGACTGTTACGGGA
259 GTATCCTAATGAAGGGAATGTGT-TTTAGTTCCCAATCTTG-AAAAAATGGAGACTGTTACGAGA
* * * * * *
876194 ATCGGTGCTTTTCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCGAAG-AAAGATT
322 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* * * * *
876258 TCCTTGCAAAAGAAAATCTTCAATATTAATTATCCTAATGAGGAGAATGTGTGTATAGTGCCTAA
387 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
876323 TCACAAAATGAATGAAGATCAT
452 TCACAAAATGAATGAAGATCAT
* * * *
876345 TACTAGAATCTATGTTTGTCTCATTTAAGGCATGAACTTAGACTATACAAAAATTGGTGGG-AGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG-
* *
876409 AAAGCCTTTCTTGC-AATACCAAAGCATCAATATCGTTTATCCTTATGAGAAGACTATGTTTATA
65 AAAGCCTTTCTTGCGAA-ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATG
* * * *
876473 GTGCCTAATC-CTGAAAAGAATTAGGATTAGTATGACTATTCAAGTTTGTCTTATTTAAAAGAGA
129 GTGCCTAATCTC-GAAAAGAA-TGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACA
* * * *
876537 AACTTTGATTCTATAAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGTATCAATGTC
192 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * * * * **
876602 ATGTATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATCCTAAAAATAATGGAAACTGTTATAA
257 ATGTATCCTAATGAAGGGAATGTGTTTTA-GTTCCCAATCTTGAAAA-AATGGAGACTGTTACGA
* * *
876667 GCATCGATGCTTGTCTTATTTAAGGGATGAAATTTGATTTTTAGGAAAATAGGGCAAAGAAAAGA
320 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
* * * * * *
876732 TTTTCATGTAAAAGAAAATCATCAATATCATTTATCCTAATGCGGAGAATGTATTTATAGTACCA
385 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
** * * *
876797 AATCATGAAATTAAAGAAAATCAT
450 AATCACAAAATGAATGAAGATCAT
* *
876821 GACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* *
876886 AACCCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
* * * * ** *
876951 GCCTAATC-CAGAAGACAATAGGGATTAGTTTGAGTATTCATGTTCATCTTTTTTAAGAGAC-AA
131 GCCTAATCTC-GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * *
877014 TTTTGATTCTATTAAAAACAGTGGAAAGAAAAACTTTTCTTGC-ACACCAAAGCATCAATGTCAT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * *
877078 GTAACCTAATAAAGGGAATGTATTTTAGATT-CTAATCATGAAAATAATAGAGA---TT--GAGA
259 GTATCCTAATGAAGGGAATGTGTTTTAG-TTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGA
* * *
877137 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATTAGAGCAGAGAACAGAT
322 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA-TAGGGCAAAGAAAAGAT
* * * * * *
877202 TTCCATGTAAAGGAAAATCATAAACATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTA
386 TTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
*
877267 ATCCCAAAATGAATGAAGATCAT
451 ATCACAAAATGAATGAAGATCAT
* * *
877290 TACTAGAATCCATGTTTGTCTCGTTTGAGTCATGAACTTAGACTTTACAAAAATTGGTGGGAA-A
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * ** * *
877354 AATGCCTTTCTTGTGAAACCAAAACATC-A-ATCGCCTATCCTAATAAGAAGACTATGTTTATGG
66 AA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * * * *
877417 TGCCTAGTCCCAAAAAGAATGGTGGTTGGTATGACTATTCATGTTTGTCTCATTTAAGAAACGAA
130 TGCCTAATCTCGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * * * *
877482 CTTTGATTCTATCAAAATCGGTGTAAAGAAAAGCATTTCTTGCGGCAGCAAAGCATCAATGTCAT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
** * ** * *
877547 GTATTTTAATGAAGGGAATGTGTTTTTAGCTCGTAATCCTGAAAATAATAGAGACTGTTACGAGA
259 GTATCCTAATGAAGGGAATGTG-TTTTAGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGA
* * * *
877612 ATTGATGCTTATCTTATTTAAGGGATGAATTTTGATTATAAGG-AAATAGGGCAAAGAAAAGATT
322 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
877676 TTCATGCAAAAGAAAATCATCAATATC-TGTTATCCTAATGGGGAGAATGTGTTTATAGTGCCTA
387 TCCATGCAAAAGAAAATCATCAATATCAT-TTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
877740 ATCACAAAATGAATGAAGATCAT
451 ATCACAAAATGAATGAAGATCAT
* *
877763 TACTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTT-GAACTTTACAAAAATTGGTGAGAA-
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG-ACTTTACAAAAATTGGTGGGAAG
* * * *
877826 AAAACCTTTCTGGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGG
65 AAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * *
877891 TGCCTAATC-CTTAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTTTTTAAGAGACAA
130 TGCCTAATCTC-GAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAA
* * * * * *
877955 AATATGATTCTATCAAAAACGATGAAAAAAAAAGC-TTTCTTGTGACACCAAAGCATCAATGTCA
193 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCA
* * * * * * *
878019 TATAACCTAATGAAGGGAATGTGTTCTAAGTTCGCAATCCTAAAAATAATGGACACTGTTACGAG
258 TGTATCCTAATGAAGGGAATGTGTT-TTAGTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAG
* * * **
878084 AATCGATGCTTGTCTTCA-TTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCGAAGGGAAGA
321 AATCGATGCTTGTCTT-ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
*
878148 TTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGA-AGATGTGTTTATAGTGC
385 TTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGA-ATGTGTTTATAGTGC
* *
878212 CTAATCACAAAATGATTAAAGATCAT
448 CTAATCACAAAATGAATGAAGATCAT
* * *
878238 TAGTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * *
878303 AAGCCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
*
878368 GCCTAATCTTGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
131 GCCTAATCTCGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * * * *
878433 TTGAATCTATCAAAAATGGTGTAGAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATGT
196 TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * ** * *
878498 ATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGAAGACAATTATGAGCAT
261 ATCCTAATGAAGGGAATGTGTTTTA-GTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAAT
*
878563 CGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTT
324 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TTT
* *
878628 CGCA--CAAAAGAAAATCGTCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
388 C-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
* *
878691 TCACAAAATGATTAAAGATCAT
452 TCACAAAATGAATGAAGATCAT
* * *
878713 TAGTAGAACCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGGAAGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* * *
878778 AAGCCTTTCTTGCGAAACTAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTAATGGT
66 AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
*
878843 GCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
131 GCCTAATCTCGAAAAGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAAC
* * * * * * *
878908 TTTGAATCTATCAAAAATGGTGTAGAGAAAAGCTTTTCTTACAACCCCAAAGCATCAATGTCATG
195 TTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATG
* * * ** * *
878973 TATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAAGAATGAAGACAATTATGAGCA
260 TATCCTAATGAAGGGAATGTGTTTTA-GTTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGAA
*
879038 TCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT
323 TCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA-TT
* *
879103 TCGCA--CAAAAGAAAATCGTCAATATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
387 TC-CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
*
879166 ATCCCAAAATGAATGAAGATCAT
451 ATCACAAAATGAATGAAGATCAT
* * *
879189 TACTAGAATCTATGTTTGTCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAA-A
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
* ** * * *
879253 ACAGCCTTTCTTGCGAAACCAAAACATCAATATCGCCTTTCCTAATGAGAAGACTTTGTTTATGG
66 A-AGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGG
* * * * * *
879318 TGCCT--TCCCTAAGAGAATGGTGAATGGCATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
130 TGCCTAATCTCGAAAAGAATGG-GATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAA
* * *
879381 CTTTGATTCCATCAAAAACGGTGGAAAGAAAAGC-TTTCTTGTGACACCAAAGCATCAATGTCTT
194 CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCAT
* * * * * *
879445 GTATCCTAATAAAGGAAATGTGTTTTTGATTTCCAATCTTGAAAAGAATGGAGATTGTTATGAGA
259 GTATCCTAATGAAGGGAATGTGTTTTAG-TTCCCAATCTTGAAAA-AATGGAGACTGTTACGAGA
* * ** * *
879510 ATCGATTCTTGTCTAATTTAAAAGATTAACTTTGAGTTTAAGGAAAATAGGGCAAAGAAAAGATT
322 ATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATT
* *
879575 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCGTAA
387 TCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
879640 TCACAAAATGAATGAAGATCAT
452 TCACAAAATGAATGAAGATCAT
* ** * *
879662 TACTAGAATCCATGGTCATCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGA
1 TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
879727 AAGCCTTTCTTG
66 AAGCCTTTCTTG
879739 TAGCGCCAAT
Statistics
Matches: 6992, Mismatches: 970, Indels: 298
0.85 0.12 0.04
Matches are distributed among these distances:
463 1 0.00
464 48 0.01
465 42 0.01
466 274 0.04
467 502 0.07
468 323 0.05
469 364 0.05
470 52 0.01
471 372 0.05
472 580 0.08
473 920 0.13
474 619 0.09
475 1722 0.25
476 1137 0.16
477 34 0.00
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.31
Consensus pattern (473 bp):
TACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGA
AAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGT
GCCTAATCTCGAAAAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
TTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGT
ATCCTAATGAAGGGAATGTGTTTTAGTTCCCAATCTTGAAAAAATGGAGACTGTTACGAGAATCG
ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
AAAATGAATGAAGATCAT
Found at i:888229 original size:18 final size:19
Alignment explanation
Indices: 888187--888236 Score: 59
Period size: 18 Copynumber: 2.7 Consensus size: 19
888177 TCAATCTTCT
888187 TCTCTCCTC-CTCTAGTCA
1 TCTCTCCTCTCTCTAGTCA
* *
888205 TCCCTCCTCTCTCTA-TTA
1 TCTCTCCTCTCTCTAGTCA
*
888223 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
888237 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
18 22 0.81
19 5 0.19
ACGTcount: A:0.08, C:0.44, G:0.04, T:0.44
Consensus pattern (19 bp):
TCTCTCCTCTCTCTAGTCA
Found at i:888248 original size:42 final size:42
Alignment explanation
Indices: 888187--888299 Score: 181
Period size: 42 Copynumber: 2.6 Consensus size: 42
888177 TCAATCTTCT
*
888187 TCTCTCCTCCTCTAGTCATCCCTCCTCTCTCTATTATCTCTCCTG
1 TCTCTCCT-C-CTA-TCATCCCTCCTCTCTCTACTATCTCTCCTG
*
888232 TCTCTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTG
1 TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
888274 TCTCTCCTCCTATCATCCCTCCTCTC
1 TCTCTCCTCCTATCATCCCTCCTCTC
888300 CCTTCTTTCT
Statistics
Matches: 65, Mismatches: 3, Indels: 3
0.92 0.04 0.04
Matches are distributed among these distances:
42 53 0.82
43 3 0.05
44 1 0.02
45 8 0.12
ACGTcount: A:0.10, C:0.47, G:0.03, T:0.41
Consensus pattern (42 bp):
TCTCTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTG
Found at i:888252 original size:12 final size:11
Alignment explanation
Indices: 888226--888296 Score: 51
Period size: 12 Copynumber: 6.5 Consensus size: 11
888216 TCTATTATCT
*
888226 CTCCTGTCTCTC
1 CTCCTATCTC-C
888238 CTCCTATCATCC
1 CTCCTATC-TCC
888250 CTCCTATCT--
1 CTCCTATCTCC
*
888259 CTACTATCT--
1 CTCCTATCTCC
*
888268 CTCCTGTCTCTC
1 CTCCTATCTC-C
888280 CTCCTATCATCC
1 CTCCTATC-TCC
888292 CTCCT
1 CTCCT
888297 CTCCCTTCTT
Statistics
Matches: 49, Mismatches: 5, Indels: 10
0.77 0.08 0.16
Matches are distributed among these distances:
9 15 0.31
11 1 0.02
12 29 0.59
13 4 0.08
ACGTcount: A:0.10, C:0.48, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:888277 original size:18 final size:18
Alignment explanation
Indices: 888208--888278 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
888198 CTAGTCATCC
* *
888208 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
888226 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
888248 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
888268 CTCCTGTCTCT
1 CTCCTGTCTCT
888279 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:892552 original size:15 final size:16
Alignment explanation
Indices: 892525--892554 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
892515 GTTATTTTTT
892525 TTTCTGCTTCTTTCAA
1 TTTCTGCTTCTTTCAA
892541 TTTCTG-TTCTTTCA
1 TTTCTGCTTCTTTCA
892555 TTAATAATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.10, C:0.23, G:0.07, T:0.60
Consensus pattern (16 bp):
TTTCTGCTTCTTTCAA
Found at i:897885 original size:42 final size:42
Alignment explanation
Indices: 897822--897950 Score: 154
Period size: 42 Copynumber: 3.1 Consensus size: 42
897812 GTAGCCCTTA
* * *
897822 AAGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAG
1 AAGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAG
* *
897864 AAGAGATAGTAGAGATG-GGAGGGATGACAAGAGGAGAAACAG
1 AAGAGATAGTAGAGA-GAGGAGGGATGACAGGAGGAGAGACAG
* * * *
897906 GAGAGATAATAGAGAGATGAGGGATGACAGGAGGAG-GAGAG
1 AAGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAG
897947 AAGA
1 AAGA
897951 AGATGGAAGA
Statistics
Matches: 73, Mismatches: 12, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
41 7 0.10
42 65 0.89
43 1 0.01
ACGTcount: A:0.46, C:0.03, G:0.43, T:0.08
Consensus pattern (42 bp):
AAGAGATAGTAGAGAGAGGAGGGATGACAGGAGGAGAGACAG
Found at i:902520 original size:42 final size:42
Alignment explanation
Indices: 902465--902583 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
902455 TTCTTCTCTC
* *
902465 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
902507 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCTTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* *
902549 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
902584 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:902525 original size:24 final size:24
Alignment explanation
Indices: 902489--902574 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
902479 CCTCCTCTCT
* *
902489 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
902513 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
*
902534 CTATC-T--CTCTTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
902555 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
902575 TCTTTCTCTT
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 3 0.06
20 5 0.11
21 14 0.30
22 5 0.11
24 20 0.43
ACGTcount: A:0.10, C:0.44, G:0.02, T:0.43
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:911457 original size:42 final size:42
Alignment explanation
Indices: 911396--911527 Score: 185
Period size: 42 Copynumber: 3.1 Consensus size: 42
911386 TAGCCCTCAA
* *
911396 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* *
911438 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
* * *
911480 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAGGAGAGAAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGA-GAGACAAG
911523 A-AGAT
1 AGAGAT
911528 GGAAGAGTGA
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 73 0.91
43 7 0.09
ACGTcount: A:0.45, C:0.02, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAAG
Found at i:911475 original size:24 final size:24
Alignment explanation
Indices: 911405--911490 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
911395 AAGAGAAAGA
* *
911405 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGAGATGATAGGAGG
*
911429 AGAGACA--AGAGA-GAT---AGT
1 AGAGACAGGAGAGATGATAGGAGG
* *
911447 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGAGATGATAGGAGG
*
911471 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGAGATGATAG
911491 AGAGAGGAGG
Statistics
Matches: 47, Mismatches: 9, Indels: 12
0.69 0.13 0.18
Matches are distributed among these distances:
18 8 0.17
20 4 0.09
21 6 0.13
22 4 0.09
24 25 0.53
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGAGATGATAGGAGG
Found at i:922683 original size:42 final size:42
Alignment explanation
Indices: 922628--922746 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
922618 TTCTTCTCTC
* *
922628 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
*
922670 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
* * *
922712 CTCCTCCTATCATCCCTCATCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
922747 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.45, G:0.03, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTGTCT
Found at i:922712 original size:18 final size:18
Alignment explanation
Indices: 922643--922713 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
922633 CCTGTCATCC
* *
922643 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
922661 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
922683 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
922703 CTCCTGTCTCT
1 CTCCTGTCTCT
922714 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:925677 original size:476 final size:475
Alignment explanation
Indices: 924363--927568 Score: 3618
Period size: 476 Copynumber: 6.8 Consensus size: 475
924353 GGTTTTCATC
* * *
924363 AGAATCTATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGC
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * * **
924428 CTTTCTTGTGAAACCAAAGCATTAATATCATGTATCCTTTTGAGAAGACTATGTTTATGGCACCT
66 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * *
924493 AATCCTAAAAAGAATGGGGATTAG--TGACTATTCATG-TTGTCTTATTTAGGAGACAAACTTTA
131 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * * * * *
924555 AATCTATCAAAAATGGTGTAAAGAGAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATG
196 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * * *
924620 CTAATGAAGGGAATGCGTTTTAGGTTCCTAATCCAGAAAATAATGGA-ACTGTTATGAGAATTGA
261 CTAATGAAGGGAATGTGTTTT-GGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* * * * * *
924684 TGCTTATCTTCTTTGTA-GGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTGCA
325 TGCTTGTCTTATTT-AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * *
924748 TGCAAAA-AAAATCCATGAATATCATTTATCCTAATGAGGAGAATGTGATTATAGTGCCTAATCA
389 TGCAAAAGAAAAT-CATCAATATCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCA
924812 CAAAATGAATGAA-ATTCATTACT
453 CAAAATGAATGAAGA-TCATTACT
** * * * *
924835 AGAATAAATGTTTGTCTCATTTAAGGCGTAAACTTAGACTTTACAAAAATTGGTGGGAGGAAAGC
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * * *
924900 CTTT-TTG-G-TAGC--A-C-T-AGTATCGTGTACCCTAATG-GAAAGACTATGTTTATGGTGCC
66 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAG-AAGACTATGTTTATGGTGCC
* * * * * *
924956 TAATCCTGAAAAGAATGGGGATTAGTATCAGTATTAATATTTGTCTTATCTAAGAAACAAACTTT
130 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
925021 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTAC-AAATCC-AAGCCTCAATGTCATGTA
195 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA-CCAAAGCATCAATGTCATGTA
* * * * *
925084 TCCTAATAAAGGGAATGTCTTTTTGGTTCCCAATCTTGAAAGGAATGGAGACTATTATGAGAATC
259 TCCTAATGAAGGGAATGT-GTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
* * * * * *
925149 AATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTATGGAAACTTGGGCAAAGAAAAGATTTCC
323 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
925214 ATGCAAAAGAAAATCATCAATATCTTTTATCCTAAAGAGCAAAATTTGTTTATAGTGCCTATTCA
388 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCA
925279 CAAAATGAATGAAGATCATTACT
453 CAAAATGAATGAAGATCATTACT
* * * * * * *
925302 AGAATCCTTGTTTGTCACATTTGAGTCATGAACTTAGACCTTGCGAAAATTAGAT-GGAAGAAAG
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATT-GGTGGGAAGAAAG
* * * * * *
925366 TCTTTCTTGTGAAACCAAATCATCAATATCGTGTATACATATGAGAATACTATGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * * *
925431 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCTTGTTTGCCCTATTTCAA-AGGCAAATTT
130 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTT
* *
925495 TGATTCTATCAAAAACGGTGGAAAGAAAAG-TATTTCTTGCAACACCAAAGCCTCAATGTCATGT
194 TGATTCTATCAAAAACGGTGGAAAGAAAAGCT-TTTCTTGCGACACCAAAGCATCAATGTCATGT
* * * * * * * *
925559 ATCCTAATGAAGGGTATGCGATTTTGGTTCCCAAACTTTAAAAGATTGGAGACTATTACGAGAAT
258 ATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAAT
*
925624 CGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTATA-GAAAATAGGGCAAAGAAAAGATTT
322 CGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTA-AGGAAAATAGGGCAAAGAAAAGATTT
* * *
925688 CCACGCAAAAGAAAATCATCAATATCATTTATCCTATTGAAGAGG-ACA--CGTTTATAGTGCCT
386 CCATGCAAAAGAAAATCATCAATATCATTTATCCTA---AAGAGGAAAATGTGTTTATAGTGCCT
* *
925750 AATCACAAAATGAATGCAGATCATTAGT
448 AATCACAAAATGAATGAAGATCATTACT
* * *
925778 AGAATCAATGTTTGTCTCATTTGAAGCATGAACTTAGACTTTACCAAAATTGGTGGGAAGAAAGC
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * *
925843 CTTTCTTGCGAAACCAAAGCCTCAATATCATGTATCCTTTTGAGAAGACTTTGTTTATGGTGCCT
66 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* *
925908 AATCCTGAAAACAATGGGGATTAGTATGACTATTCATGTTTGTCTTATCTAAGAGACAAACTTTG
131 AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * ** * *
925973 AATCTATCAAAAACGGTGTAAAGAAAAGCTTTTCTTATGATAGCAAAGCATCAATGTCATGTATC
196 ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
* * * ** ** *
926038 CTATTGAAGAGAATGTGTTTTAGGTTCCCGATCCTGAAAATTATGGAGACTACTATGAGAATCAA
261 CTAATGAAGGGAATGTGTTTT-GGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGA
* ** * * * *
926103 CGCTTGTCTTCCTTATGGGATGAACTTTCATTTTAAGG---AT-TGG---TG----G--------
325 TGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCAT
* * *
926149 G---AA-AAAATGATC---ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACA
390 GCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACA
926207 AAATGAATGAAGATCATTACT
455 AAATGAATGAAGATCATTACT
* * *
926228 AGAATACATGTTTGTCTCTTTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGT
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* *
926293 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGATTATGGTGCCT
66 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
* * * * * * *
926358 AATCCTAAAAAGAATGGGGATTGGT-TCGACCATTCATTTTTGTATTATTTAAGAGCCAAGCTTT
131 AATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
926422 GATTCCATCAAAAACGAG-AGAAA-AAAAGCATTTCTTGCGACACCAAAGTATCAATGTCATGTA
195 GATTCTATCAAAAACG-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTA
* * * * * * * * * *
926485 TCTTAGTGAAGGGATTGTGTTCTAGGTTCCCAATTCTGACAATAATGGAGATTGTTTTAAGAATC
259 TCCTAATGAAGGGAATGTGTT-TTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATC
* * *
926550 GATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTAAGGAAAAAAGGG-AAA-AAAATATTTCC
323 GATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
* * * *
926613 ATGCAAAAGAAAATGATCAATATCATTTATCCTAATGA-GAAGAATGTGTTTATATTACCTAATC
388 ATGCAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAA-AATGTGTTTATAGTGCCTAATC
926677 ACAAAATGAATGAAGATCATTACT
452 ACAAAATGAATGAAGATCATTACT
* * * * *
926701 AGAATCCATGTTTGTCTTATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAATC
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
* * * * * * * *
926766 CTTTCTTGTGAAACCATATCACCAATATCGTGTAT-CTTAATGAAAAGACTACGTTTATGCTACC
66 CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTT-ATGAGAAGACTATGTTTATGGTGCC
* * * * * *
926830 TAATCCTAAAAAGAATGGGGATTAGTATGAGTATTAATGTTTGTCTTATTTAAAAGAAAAACTTC
130 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * ** * *
926895 GATTCTATCAAAAATGGTGGAAAGAACAGCTTTTCTTATGACACCAAAGCATTAATGCCATGTAT
195 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * **
926960 CCTAATGGAGGAAATGTGTTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTACGGGCTTCG
260 CCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCG
* **
927025 ATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTGAA
324 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
* * * *
927090 CGCAAAAGAAAATCATCAATATCTTTTATCCTAATA-AGGAGAATGTGTTTATATTGCCTAATC-
389 TGCAAAAGAAAATCATCAATATCATTTATCCTAA-AGAGGAAAATGTGTTTATAGTGCCTAATCA
* *
927153 CTAAAATGAATGAAGATCTTTACG
453 C-AAAATGAATGAAGATCATTACT
*
927177 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAA-AAATG
1 AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-G
* * * * * *
927241 CCTTTCTTGCAAAACCAAAACATTAATATTGTGTATCCTAATGAGAAGACTGTGTTTATGGTGCC
65 CCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCC
* * * * *
927306 TAGTCCCGAAGAGAATGGTGATTGGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
130 TAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
927371 GATTCTATAAAAAAAGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCAACAATGTCTTATAT
195 GATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTAT
* * * * *
927436 CCTAATGAAGGGAATGTGTTTTTGGTTCCTAATCCTGAAAATAATAGAGACTGTTACGAGCATCG
260 CCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCG
* * * * * * *
927501 GTGCTTGTCTTATTTAAGGTATGAACATTAATTTTAAGGAAGATATGGCAAAGAAAAGATTTTCA
324 ATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCA
927566 TGC
389 TGC
927569 TTTGCCTAAT
Statistics
Matches: 2289, Mismatches: 367, Indels: 152
0.82 0.13 0.05
Matches are distributed among these distances:
447 5 0.00
448 1 0.00
449 117 0.05
450 243 0.11
451 1 0.00
452 1 0.00
453 10 0.00
454 2 0.00
457 1 0.00
463 1 0.00
464 56 0.02
465 2 0.00
466 65 0.03
467 249 0.11
468 11 0.00
469 6 0.00
470 12 0.01
471 3 0.00
472 72 0.03
473 241 0.11
474 128 0.06
475 140 0.06
476 910 0.40
477 5 0.00
478 2 0.00
479 5 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
AGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGC
CTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCT
AATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATC
CTAATGAAGGGAATGTGTTTTGGTTCCCAATCCTGAAAAGAATGGAGACTGTTATGAGAATCGAT
GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
CAAAAGAAAATCATCAATATCATTTATCCTAAAGAGGAAAATGTGTTTATAGTGCCTAATCACAA
AATGAATGAAGATCATTACT
Found at i:927306 original size:158 final size:157
Alignment explanation
Indices: 926161--927526 Score: 515
Period size: 158 Copynumber: 8.6 Consensus size: 157
926151 AAAAATGATC
* * * * *
926161 ATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAAATGAATGAAGATCATT
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTAAAATGAATGGAGATCTTT
* * * *
926225 ACTAGAATACATGTTTGTCTCT-TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGA
65 ACGAGAATCCATGTTTGTCT-TATTTGAGGCATGAACTTAGACTTTACAAAAA-TGATGGGAAAA
*
926289 AAGTC-TTTCTTGCGAAACCAAAGCATCAAT
128 AAG-CATTTCTTGCGAAACCAAAACATCAAT
* ** * * * * *
926319 ATCGTGTATCCTTTTGAGAAGACTATGATTATGGTGCCTAATCCTAAAAAGAATGGGGAT-TGGT
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTAAAATGAATGGAGATCT--T
** * * * * * * * * *
926383 T-CGACCATTCATTTTTGTATTATTTAAGAGCCA--AGCTTTGA-TTCCATCAAAAACGA-GAGA
64 TACGAGAATCCATGTTTGTCTTATTT--GAGGCATGAACTTAGACTT-TA-CAAAAATGATG-GG
* **
926443 AAAAAAGCATTTCTTGCGACACCAAAGTATCAAT
124 AAAAAAGCATTTCTTGCGAAACCAAAACATCAAT
* * * * * * * * *
926477 GTCATGTATCTTAGTGA-AGGGATTGTGTTCTA-GGTTCCCAATTCTGACAAT-AATGGAGATTG
1 ATCATGTATCCTAATGAGA-AGAATGTGTT-TATGGTGCCTAATCCT-AAAATGAATGGAGA-T-
* * * * * * * * *
926539 TTTTA--AGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTTTA-AGGAAAA--AAGGG
61 CTTTACGAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACA--AAAATGATGGG
** * ** *
926599 AAAAAAATATTTCCATGC-AAAAGAAAATGATCAAT
124 AAAAAAGCATTT-CTTGCGAAACCAAAA-CATCAAT
* ** * * *
926634 ATCATTTATCCTAATGAGAAGAATGTGTTTATATTACCTAATCAC-AAAATGAATGAAGATCATT
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATC-CTAAAATGAATGGAGATCTTT
* * * *
926698 ACTAGAATCCATGTTTGTCTTATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAA
65 ACGAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAA-TGATGGGAAAAA
* * * * * *
926763 ATCCTTTCTTGTGAAACCATATCACCAAT
129 AGCATTTCTTGCGAAACCAAAACATCAAT
* * * * ** * * * * *
926792 ATCGTGTATCTTAATGAAAAGACTACGTTTATGCTACCTAATCCTAAAAAGAATGGGGAT-TAGT
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTAAAATGAATGGAGATCT-TT
* * ** * * ** * *
926856 ATGAGTATTAATGTTTGTCTTATTTAAAAG-AAAAACTTCGA-TTCTATCAAAAATGGT-GGAAA
65 ACGAGAATCCATGTTTGTCTTATTT-GAGGCATGAACTTAGACTT-TA-CAAAAATGATGGGAAA
* ** * * *
926918 GAACAGCTTTTCTTATGACACCAAAGCATTAAT
127 -AA-AGCATTTCTTGCGAAACCAAAACATCAAT
** * * * *
926951 GCCATGTATCCTAATG-GAGGAAATGTGTTTTTGGTTCCCAATCCTGAAAA-GAATGGAGA-CTG
1 ATCATGTATCCTAATGAGAAG-AATGTGTTTATGGTGCCTAATCCT-AAAATGAATGGAGATCT-
* ** * * * * * * *
927013 TTACGGGCTTCGATGCTTGTCTTATTTAAGGGATAAACTTTGATTTTA-AGGAAAAT-A-GGGCA
63 TTACGAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACA--AAAATGATGGG--
*** **
927075 AAGAAAAG-ATTT-GAACGCAAAAGAAAATCATCAAT
124 AA-AAAAGCATTTCTTGCG-AAACCAAAA-CATCAAT
* * * * ** *
927110 ATCTTTTATCCTAATAAGGAGAATGTGTTTATATTGCCTAATCCTAAAATGAATGAAGATCTTTA
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTAAAATGAATGGAGATCTTTA
* *
927175 CGAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAATTGATGGGAAAAAT
66 CGAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAA-TGATGGGAAAAAA
* * *
927240 GCCTTTCTTGCAAAACCAAAACATTAAT
130 GCATTTCTTGCGAAACCAAAACATCAAT
** * * * * * *
927268 ATTGTGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAGTCCCGAAGA-GAATGGTGAT-TGG
1 ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAAT-CCTAAAATGAATGGAGATCT-T
* ** * * * * * * *
927331 TATGACTATTCATGTTTGTCTTATTTAAGAGACA--AACTTTGA-TTCTATAAAAAAAGGTGGAA
64 TACGAGAATCCATGTTTGTCTTATTT--GAGGCATGAACTTAGACTT-TA-CAAAAATGATGGGA
* * * *
927393 AGAAAAGCTTTTCTTGCGACACCAAAGCAACAAT
125 A-AAAAGCATTTCTTGCGAAACCAAAACATCAAT
* * * * * * *
927427 GTCTTATATCCTAATGA-AGGGAATGTGTTTTTGGTTCCTAATCCTGAAAAT-AATAGAGA-CTG
1 ATCATGTATCCTAATGAGA-AGAATGTGTTTATGGTGCCTAATCCT-AAAATGAATGGAGATCT-
* ** * * *
927489 TTACGAGCATCGGTGCTTGTCTTATTTAAGGTATGAAC
63 TTACGAGAATCCATGTTTGTCTTATTTGAGGCATGAAC
927527 ATTAATTTTA
Statistics
Matches: 871, Mismatches: 259, Indels: 155
0.68 0.20 0.12
Matches are distributed among these distances:
155 3 0.00
156 32 0.04
157 103 0.12
158 368 0.42
159 333 0.38
160 27 0.03
161 5 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (157 bp):
ATCATGTATCCTAATGAGAAGAATGTGTTTATGGTGCCTAATCCTAAAATGAATGGAGATCTTTA
CGAGAATCCATGTTTGTCTTATTTGAGGCATGAACTTAGACTTTACAAAAATGATGGGAAAAAAG
CATTTCTTGCGAAACCAAAACATCAAT
Found at i:927940 original size:427 final size:427
Alignment explanation
Indices: 927143--927989 Score: 1054
Period size: 427 Copynumber: 2.0 Consensus size: 427
927133 TGTGTTTATA
* * * *
927143 TTGCCTAATCCTAAAATGAATGAAGATCTTTACGAGAATCCATGTTTGTCTCATTTGAGGCATGA
1 TTGCCTAATCCTAAAATGAATAAAGATCTTTACGAGAATCCATGTTTGTCACATTTAAGGCACGA
** * *
927208 ACTTAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCAAAACCAAAACATTAATATTGT
66 ACGCAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGT
* ** * * ***
927273 GTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAGTCCCGAAGAGAATGGTGATTGGTATGACT
131 GTATCCTAATGAGAAGACTATGTTTATGGTAACTAATCCCGAAAAGAATGAAAATTGGTATGACT
* * *
927338 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAAAGGTGGAAAGAAAAGCTT
196 ATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATAAAAAAAGGTGGAAAGAAAAGCAT
** ** *
927403 TTCTTGCGACACCAAAGCAACAATGTCTTATATCCTAATGAAGGGAATGTGTTTTTGGTTCCTAA
261 TTCTTGCGACACCAAAGCAACAATGTCTTATATCCTAATGAAGGGAATGCATTTTCAGTTCCCAA
* * * * * * * *
927468 TCCTGAAAATAATAGAGACTGTTACGAGCATCGGTGCTTGTCTTATTTAAGGTATGAACATTAAT
326 ACATGAAAAGAATAGAGACTATTACGAGAATCGATGCTGGTCTTATTTAAGGGATGAACATTAAT
*
927533 TTTAAGGAAGATATGGCAAAGAAAAGATTTTCATGCT
391 TTTAAGGAAGATAGGGCAAAGAAAAGATTTTCATGCT
* * *
927570 TTGCCTAATCAC-AAAATGAATAAAGATCATTT-CTAGAATCCTTGTTTGTCACATTTAAGTCAC
1 TTGCCTAATC-CTAAAATGAATAAAGATC-TTTACGAGAATCCATGTTTGTCACATTTAAGGCAC
* * * * *
927633 GAACGCAGACTTTACGAAAATTGGTGGGAAGAAA-GTCTTTCTTGCGAAACCAAAGCATCAATAT
64 GAACGCAGACTTTACAAAAATTGATGGGAA-AAATGCCTTTCTTGCAAAACCAAAACATCAATAT
* * * * *
927697 CGTGTATCCTTATGAGAATACTATTTTTATGGTAACTAATCCTGAAAAGAATGAAAATTTGTATG
128 CGTGTATCCTAATGAGAAGACTATGTTTATGGTAACTAATCCCGAAAAGAATGAAAATTGGTATG
* * * ** *
927762 ACTATTCTTGTTTGTCCTATTTCAGAGGCAAACTTTGACTCTATCGAAAACGGTGGAAAGAAAAG
193 ACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATAAAAAAAGGTGGAAAGAAAAG
* **
927827 CATTTCTTGCGACACCAAAGCATCAATGTCATT-TATCCTAATGAAGGGTTTGCATTTTCAGTTC
258 CATTTCTTGCGACACCAAAGCAACAATGTC-TTATATCCTAATGAAGGGAATGCATTTTCAGTTC
* * * * *
927891 CCAAACATGAAAAGACTGGAGACTATTTCGAGAATCGATGCTGGTCTTATTTAAGGGGTGAACTT
322 CCAAACATGAAAAGAATAGAGACTATTACGAGAATCGATGCTGGTCTTATTTAAGGGATGAACAT
* * * *
927956 TGATTTTATGGAATATAGGGCAAAGAAAATATTT
387 TAATTTTAAGGAAGATAGGGCAAAGAAAAGATTT
927990 CCACGCAAAA
Statistics
Matches: 352, Mismatches: 64, Indels: 8
0.83 0.15 0.02
Matches are distributed among these distances:
427 343 0.97
428 9 0.03
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (427 bp):
TTGCCTAATCCTAAAATGAATAAAGATCTTTACGAGAATCCATGTTTGTCACATTTAAGGCACGA
ACGCAGACTTTACAAAAATTGATGGGAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCGT
GTATCCTAATGAGAAGACTATGTTTATGGTAACTAATCCCGAAAAGAATGAAAATTGGTATGACT
ATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATAAAAAAAGGTGGAAAGAAAAGCAT
TTCTTGCGACACCAAAGCAACAATGTCTTATATCCTAATGAAGGGAATGCATTTTCAGTTCCCAA
ACATGAAAAGAATAGAGACTATTACGAGAATCGATGCTGGTCTTATTTAAGGGATGAACATTAAT
TTTAAGGAAGATAGGGCAAAGAAAAGATTTTCATGCT
Found at i:929476 original size:947 final size:947
Alignment explanation
Indices: 927571--930922 Score: 4034
Period size: 947 Copynumber: 3.5 Consensus size: 947
927561 TTTCATGCTT
* * * * *
927571 TGCCTAATCACAAAATGAATAAAGATCATTTCTAGAATCCTTGTTTGTCACATTTAAGTCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * *
927636 CGCAGACTTTACGAAA-ATTGGTGGGAAGAAAGTCTTTCTTGCGAAACCAAAGCATCAATATCGT
66 --CAGACTTTAC-AAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGT
* * ** *** *
927700 GTATCCTTATGAGAATACTATTTTTATGGTAACTAATCCTGAAAAGAATGAAAATTTGTATGACT
128 GTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * * * *
927765 ATTCTTGTTTGTCCTATTTCAGAGGCAAACTTTGACTCTATCGAAAACGGTGGAAAGAAAAGCAT
193 ATTCATGTTTGTCCTATTT-AAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCAT
* ** *
927830 TTCTTGCGACACCAAAGCATCAATGTCATTTATCCTAATG-AAGGGTTTGCATTTTCAGTTCCCA
257 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGCGTTTTCAGTTCCCA
* * * * *
927894 AACATGAAAAGACTGGAGACTATTTCGAGAATCGATGCTGGTCTTATTTAAGGGGTGAACTTTGA
322 AACTTGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAA-GGGTGAAATTTGA
* * * * *
927959 TTTTATGGAATATAGGGCAAAGAAAATATTTCCACGCAAAAAAAAAATCATAAATATCATTTATC
386 TTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATC
* * * *
928024 GT-ACTGATGAGGATGTGTTTATAGTGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCC
450 CTAAC-GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCC
*
928088 ATGTTTGCCTCAATTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
514 ATGTTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT
* * *
928153 GCAAAACCAAAGCTTCAATATCATGTATCATTTCTGAGAAGACTACGTTT-TCGGTGCCTAATCT
579 GCAAAACCAAAGCTTCAATATCATGTATCATTTATGAGAAGACTATGTTTAT-GGTGCCTAATCC
* * * *
928217 TGAAAAGAATGAGGATTAGGATGACTATTCATGTTTGTCTTATTTGAGAGATAAACTTTGAATCA
643 TGAAAAGAATG-GGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCT
* * * *
928282 ATCAAAAATGGTGTAAAGAAAAGCTTTTCTTATGACACCAAAGCGTCGATGTCATGTATCCTAAA
707 ATCAAAAACGGTGTAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAAT
** * *
928347 GAAGGGAATGCATTTTTGGTTCACAATCTTGAAAATAATGGAGGTTGTTATGAGCAT-AGATGCT
772 GAAGGGAATGTGTTTTTGGTTCACAATCTTGAAAATAATGGAGATTGTTATGAGAATCA-ATGCT
* * * * *
928411 TGTCTTATTTATGGTATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGTTTTTCAAGCAA
836 TGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAA
* *
928476 AAGAAAATCATCAGTATCATTTATCCTAATAAGGAGAATATGTTTATAG
901 AAGAAAATCATCAATATCATTTATCCTAATGAGGAG-A-ATGTTTATAG
*
928525 TGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAA-GCACG-
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGCACGA
928588 A-AGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
65 ACAGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
* * *
928652 ATCCTTTTGAGAAGACTATATTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
130 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * * * *
928717 TCTTGTTTGTCCTATTTCATAAG-CAAATTTTGATTCTATCGAAAGCGGTGCAAAGAAAAGCATT
195 TCATGTTTGTCCTATTT-A-AAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATT
* * * * * * *
928781 TCTTGCAACACCAGAGCCTCAATGTCATGTATCCTAAGGAAAGGTAA-GCGTTTTCGGTTCCTAA
258 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGCGTTTTCAGTTCCCAA
* * * * *
928845 ACTTGAAAAGTCCAGAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGGT-AAATTTGATT
323 ACTTGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGTGAAATTTGATT
* * *
928909 TTATGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATTTTATTTATCCTA
388 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
928974 ACGAGGAGGATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCATGT
453 ACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
929039 TTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGATGGGAAGATAGCCTTTCTTGCAA
518 TTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAA
* *
929104 AACCAAAGCTTCAATATCATGTATCATTTTTGAGAAGACTATGTTTATGGCGCCTAATCCTGAAA
583 AACCAAAGCTTCAATATCATGTATCATTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
* *
929169 AGAATAGGGATTAGTATGACTATTCATATTTGTCTTATTTTAGAGACAAACTTTGAATCTATCAA
648 AGAAT-GGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAA
** *
929234 AAACAATGTTAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
712 AAACGGTGTAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * ** **
929299 GAATGTGTTTTAGGTTCCCGATCTCGAAAATAATGGAGACTCCTACAAGAATCAATGCTTGTCTT
777 GAATGTGTTTTTGGTTCACAATCTTGAAAATAATGGAGATTGTTATGAGAATCAATGCTTGTCTT
* * * *
929364 ATTTAAGGGGTGAACTTTGATTTTATGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAA
842 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
929429 ATCATCAATATCATTTATCCTAATGAGGACGACATGTTTATAG
907 ATCATCAATATCATTTATCCTAATGAGGA-GA-ATGTTTATAG
* * *
929472 TGCCTAATCACAAAATGAATGAAGATCACTAGTAGAATCCATGTTTGTCTCATTTAAGGCATG-A
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * * *
929536 -AGACTTTGCAAATATTGGTGGGAGGAAAG-C---CTTGTGAAACCAAACCATCAATTTCATGTA
66 CAGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTA
*
929596 TCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
131 TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
* * * ** * *
929661 CATGTTTATCTTATTTAAGAGACAAACTTTGAATCTATCAAAAATAGTGTAAAGAAAAGCGTTTC
196 CATGTTTGTCCTATTTAA-AGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTC
* * * * *
929726 TTACGACACCAAAGCATCAATGTCAGGTATCCTAATG-AAGGGAATGTGTTTT-AGGTTCACAAT
260 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGCGTTTTCA-GTTCCCAAA
** * * * * * * * * * * *
929789 CCCGAAAATAATGGAGACTGTTATGAGAATTGATGCTTATCTTCTTTATGGGATGAACTTTAATT
324 CTTGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGG-TGAAATTTGATT
* * * * * *
929854 TTA-AGCAAAT----C-AAGGAAAGATTTCCATGCAAGA-AAAATCCATTAATATCAATTATCCT
388 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATATCATTTATCCT
** * *
929912 AATAAGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATG
452 AACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * * *
929977 TTTGTCTCATTTGAGGCACGAATTTAGACTTTAGAAAAATTGGTGGGAAGAAACCCATTCTTGCG
517 TTTGCCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
** * * * * * * * *
930042 GTACCACAGCATCAAGATCGTGTATC-CTTATAAGAAGACTTTGTTTATGGTGCCTAATCCCGAA
582 AAACCAAAGCTTCAATATCATGTATCATTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * * *
930106 AAGAATGAGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTACCAA
647 AAGAATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAA
* * * ** * *
930171 AAACGGTGGAAAGAAAAAC-TTCCTTGCGACACCAAAGTATCAATGTCATGTATCCTATTGAAGG
712 AAACGGTGTAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG
* * * * * *
930235 GAATGTGTTTTTGGTTTACAATCTTGAAAAGAATGGAGATTGTTATGAGAATCGATTCTTATCTA
777 GAATGTGTTTTTGGTTCACAATCTTGAAAATAATGGAGATTGTTATGAGAATCAATGCTTGTCTT
* * * *
930300 ATTTCAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAA
842 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAA
* * *
930365 ATCATCATTATCATTTATCCTAAAGAGGAGAATGCGTTTATGG
907 ATCATCAATATCATTTATCCTAATGAGGAGAAT--GTTTATAG
* * * * *
930408 TACCTAATTACAAAATGATTGAAGATCATTACTAGAGTCCATGGTTGTCTCATTTAAGGCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* *
930473 CTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTGT--------AGCACCAATATCGTG
66 C--AGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTG
* * * ** *
930530 TATCCTAATGAAAAGAATATGTTTATAATGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGC-
129 TATCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CT
* * * *
930594 ATTGATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTT
193 ATTCATGTTTGTCCTATTT-AAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCAT
* * * *
930659 TTCTTGCGACCCCAAAGCATTAATGTCATGTATCCTAAT-AAAGGGAATGTC-TTTTTAATTCCC
257 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATG-CGTTTTCAGTTCCC
* * * * * * * *
930722 AATCTTGAAAGGAATGGAGACTATTATGACAATCGATGCTTGTCTTTTTTAAGAGAT-AAACTTT
321 AAACTTGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAG-GGTGAAA-TTT
* * * *
930786 GATTTTAGGGAAAATAGGGCAAAGAAAAAATTTCCATGTAAAAGAAAATCATCTATATCATTTAT
384 GATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
930851 CCTAA-GTA-GAGAAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAAATCAATACTAGAAT
449 CCTAACG-AGGAG-AATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAAT
*
930914 CCTTGTTTG
512 CCATGTTTG
930923 TCATCAGATA
Statistics
Matches: 2064, Mismatches: 291, Indels: 98
0.84 0.12 0.04
Matches are distributed among these distances:
934 2 0.00
935 4 0.00
936 463 0.22
937 78 0.04
938 43 0.02
939 170 0.08
940 28 0.01
941 6 0.00
942 100 0.05
943 224 0.11
944 11 0.01
945 11 0.01
946 3 0.00
947 549 0.27
948 46 0.02
949 7 0.00
950 256 0.12
951 6 0.00
953 1 0.00
954 54 0.03
955 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (947 bp):
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
CAGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTA
TCCTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATT
CATGTTTGTCCTATTTAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCT
TGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGGAATGCGTTTTCAGTTCCCAAACT
TGAAAAGACTAGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGTGAAATTTGATTTTA
TGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACG
AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
CCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAAC
CAAAGCTTCAATATCATGTATCATTTATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGA
ATGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAAC
GGTGTAAAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAT
GTGTTTTTGGTTCACAATCTTGAAAATAATGGAGATTGTTATGAGAATCAATGCTTGTCTTATTT
AAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCA
TCAATATCATTTATCCTAATGAGGAGAATGTTTATAG
Found at i:929736 original size:468 final size:469
Alignment explanation
Indices: 927571--930924 Score: 3660
Period size: 468 Copynumber: 7.1 Consensus size: 469
927561 TTTCATGCTT
* * * * *
927571 TGCCTAATCACAAAATGAATAAAGATCATTTCTAGAATCCTTGTTTGTCACATTTAAGTCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * *
927636 CGCAGACTTTACGAAAATTGGTGGGAAGAAAGTCTTTCTTGCGAAACCAAAGCATCAATATCGTG
66 --TAGACTTTACAAAAATTGGTGGGAAGAAAG-C---CTTGTGAAACCAAAGCATCAATATCGTG
* * * ** *** *
927701 TATCCTTATGAGAATACTATTTTTATGGTAACTAATCCTGAAAAGAATGAAAATTTGTATGACTA
125 TATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
* * * * * * *
927766 TTCTTGTTTGTCCTATTTCAGAGGCAAACTTTGACTCTATCGAAAACGGTGGAAAGAAAAGCATT
190 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTT
* ** **
927831 TCTTGCGACACCAAAGCATCAATGTCATTTATCCTAATGAAGGGTTTGCATTTTCA-GTTCCCAA
255 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-AGGTTCCCAA
* * * * * * *
927895 ACATGAAAAGACTGGAGACTATT-TCGAGAATCGATGCTGGTCTTATTTAAGGGGTGAACTTTGA
319 TCTTGAAAATAATGGAGACTGTTAT-GAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * *
927959 TTTTATGGAATATAGGGCAAAGAAAATATTTCCACGCAAAAAAAAAATCATAAATATCATTTATC
383 TTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATC
* * * *
928024 GTACTGATGAGGATGTGTTTATAG
447 CTAATGAGGA-GATATGTTTATAG
* * * *
928048 TGCTTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCAATTGAGGCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * *
928113 CTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCTTCAATATCATG
66 --TAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TT-GTG--AAACCAAAGCATCAATATCGTG
* * * * *
928178 TATCATTTCTGAGAAGACTACGTTT-TCGGTGCCTAATCTTGAAAAGAATGAGGATTAGGATGAC
125 TATCCTTT-TGAGAAGACTATGTTTAT-GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
928242 TATTCATGTTTGTCTTATTTGAGAGATAAACTTTGAATCAATCAAAAATGGTGTAAAGAAAAGCT
188 TATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCT
** * * * ** * *
928307 TTTCTTATGACACCAAAGCGTCGATGTCATGTATCCTAAAGAAGGGAATGCATTTTTGGTTCACA
253 TTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCA
** * * * * *
928372 ATCTTGAAAATAATGGAGGTTGTTATGAGCATAGATGCTTGTCTTATTTATGGTATGAACATTGA
318 ATCTTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA
* * * * *
928437 TTTTAAGGAAAATAGGGCAAAGAAAAGTTTTTCAAGCAAAAGAAAATCATCAGTATCATTTATCC
383 TTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
*
928502 TAATAAGGAGAATATGTTTATAG
448 TAATGAGGAG-ATATGTTTATAG
*
928525 TGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAA-GCACG-
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-AAGGCACGA
* *
928588 A-AGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
65 ATAGACTTTACAAAAATTGGTGGGAAGAAAG-C---CTTGTGAAACCAAAGCATCAATATCGTGT
* *
928652 ATCCTTTTGAGAAGACTATATTTATGGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
126 ATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTAT
* * * * * * * *
928717 TCTTGTTTGTCCTATTTCATA-AG-CAAATTTTGATTCTATCGAAAGCGGTGCAAAGAAAAGCAT
191 TCATGTTTGTCTTATTT-A-AGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTT
* * * * * * * *
928780 TTCTTGCAACACCAGAGCCTCAATGTCATGTATCCTAAGGAAAGGTAA-GCGTTTTCGGTTCCTA
254 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATG-AAGGGAATGTGTTTTAGGTTCCCA
* * * ** *
928844 AACTTGAAAAGTCCA--GAGATTGTTACAAGAATCGATGCTTGTCTTATTTAAGGG-T-AAATTT
318 ATCTTGAAAA-T-AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTT
* * *
928905 GATTTTATGGAAAATATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATTTTATTTAT
381 GATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTAT
* * *
928970 CCTAACGAGGAGGATGTGTTTATTG
446 CCTAATGAGGA-GATATGTTTATAG
* * *
928995 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATTCATGTTTGCCTCATTTGAGGCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * * * *
929060 CTTAGACTTTACAAAAATTGATGGGAAGATAGCCTTTCTTGCAAAACCAAAGCTTCAATATCATG
66 --TAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TT-GTG--AAACCAAAGCATCAATATCGTG
* * *
929125 TATCATTTTTGAGAAGACTATGTTTATGGCGCCTAATCCTGAAAAGAATAGGGATTAGTATGACT
125 TATC-CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACT
* * ** **
929190 ATTCATATTTGTCTTATTTTAGAGACAAACTTTGAATCTATCAAAAACAATGTTAAGAAAAGCTT
189 ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTT
** *
929255 TTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCGA
254 TTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAA
* ** ** * *
929320 TCTCGAAAATAATGGAGACTCCTACAAGAATCAATGCTTGTCTTATTTAAGGGGTGAACTTTGAT
319 TCTTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
*
929385 TTTATGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
384 TTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
*
929450 AATGAGGACGACATGTTTATAG
449 AATGAGGA-GATATGTTTATAG
* * *
929472 TGCCTAATCACAAAATGAATGAAGATCACTAGTAGAATCCATGTTTGTCTCATTTAAGGCATG-A
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * * * * *
929536 -AGACTTTGCAAATATTGGTGGGAGGAAAGCCTTGTGAAACCAAACCATCAATTTCATGTATCCT
66 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTGTGAAACCAAAGCATCAATATCGTGTATCCT
929600 TTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
131 TTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
* ** * * *
929665 TTTATCTTATTTAAGAGACAAACTTTGAATCTATCAAAAATAGTGTAAAGAAAAGCGTTTCTTAC
196 TTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
* * **
929730 GACACCAAAGCATCAATGTCAGGTATCCTAATGAAGGGAATGTGTTTTAGGTTCACAATCCCGAA
261 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAA
* * * * * *
929795 AATAATGGAGACTGTTATGAGAATTGATGCTTATCTTCTTTATGGGATGAACTTTAATTTTA-AG
326 AATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG
* * * * * *
929859 CAAAT----C-AAGGAAAGATTTCCATGCAAGA-AAAATCCATTAATATCAATTATCCTAATAAG
391 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATATCATTTATCCTAATGAG
929918 GAGAATATGTTTATAG
455 GAG-ATATGTTTATAG
* *
929934 TGCCTAATCACAAAATGAATGAAGATTATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* * * ** * *
929999 TTTAGACTTTAGAAAAATTGGTGGGAAGAAACCCATTCTTGCGGTACCACAGCATCAAGATCGTG
66 --TAGACTTTACAAAAATTGGTGGGAAGAAA-GC---CTTGTGAAACCAAAGCATCAATATCGTG
* * * * *
930064 TATCCTTATAAGAAGACTTTGTTTATGGTGCCTAATCCCGAAAAGAAT-GAGATTAGTATGACTA
125 TATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA
* * * *
930128 TTCATGTTTGTCTTATTTAAGAGACAAATTTTGATTCTACCAAAAACGGTGGAAAGAAAAAC-TT
190 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTT
* * * * **
930192 CCTTGCGACACCAAAGTATCAATGTCATGTATCCTATTGAAGGGAATGTGTTTTTGGTTTACAAT
255 TCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAAT
* * * * * * * *
930257 CTTGAAAAGAATGGAGATTGTTATGAGAATCGATTCTTATCTAATTTCAGAGATAAACTTTGATT
320 CTTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * *
930322 TTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAAAAAATCATCATTATCATTTATCCTA
385 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA
* *
930387 AAGAGGAGA-ATGCGTTTATGG
450 ATGAGGAGATAT--GTTTATAG
* * * * *
930408 TACCTAATTACAAAATGATTGAAGATCATTACTAGAGTCCATGGTTGTCTCATTTAAGGCACGAA
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
* *** *
930473 CTTAGACTTTACAAAAATTGGTGGGAGGAAAGCCTT-T----CTTGTAGCACCAATATCGTGTAT
66 --TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTGTGAAAC-CAAAGCATCAATATCGTGTAT
** * * ** *
930533 CCTAATGAAAAGAATATGTTTATAATGCCAAATCCTGAAAAGAATGGGGATTAGTATGAGC-ATT
128 CCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA-CTATT
* * * *
930597 GATGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC
192 CATGTTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTTTC
* * * * *
930662 TTGCGACCCCAAAGCATTAATGTCATGTATCCTAATAAAGGGAATGTCTTTTTA-ATTCCCAATC
257 TTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-GTTTTAGGTTCCCAATC
** * * * * *
930726 TTGAAAGGAATGGAGACTATTATGACAATCGATGCTTGTCTTTTTTAAGAGATAAACTTTGATTT
321 TTGAAAATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTT
* * * *
930791 TAGGGAAAATAGGGCAAAGAAAAAATTTCCATGTAAAAGAAAATCATCTATATCATTTATCCTAA
386 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
* *
930856 -GTAGAGAAATGTGTTTATAG
451 TG-AG-GAGATATGTTTATAG
* * * *
930876 TGCCTAATCACAAAATGAATAAAAATCAATACTAGAATCCTTGTTTGTC
1 TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC
930925 ATCAGATACA
Statistics
Matches: 2432, Mismatches: 380, Indels: 139
0.82 0.13 0.05
Matches are distributed among these distances:
461 6 0.00
462 113 0.05
463 1 0.00
465 1 0.00
466 76 0.03
467 76 0.03
468 564 0.23
469 105 0.04
470 206 0.08
471 7 0.00
472 188 0.08
473 97 0.04
474 198 0.08
475 201 0.08
476 7 0.00
477 353 0.15
478 232 0.10
479 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (469 bp):
TGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAA
TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTGTGAAACCAAAGCATCAATATCGTGTATCCT
TTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
TTTGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGC
GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCTTGAA
AATAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGG
AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
AGATATGTTTATAG
Found at i:934932 original size:18 final size:19
Alignment explanation
Indices: 934890--934939 Score: 52
Period size: 18 Copynumber: 2.7 Consensus size: 19
934880 TCCATCTTCT
934890 TCTCTCCTCT-TCTTGTCA
1 TCTCTCCTCTCTCTTGTCA
*
934908 TCCCTCCTCTCTCTAT-T-A
1 TCTCTCCTCTCTCT-TGTCA
*
934926 TCTCTCCTGTCTCT
1 TCTCTCCTCTCTCT
934940 CCTCCTATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 22 0.81
19 4 0.15
20 1 0.04
ACGTcount: A:0.06, C:0.42, G:0.04, T:0.48
Consensus pattern (19 bp):
TCTCTCCTCTCTCTTGTCA
Found at i:934955 original size:12 final size:11
Alignment explanation
Indices: 934929--935004 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
934919 TCTATTATCT
*
934929 CTCCTGTCTCTC
1 CTCCTATCTC-C
934941 CTCCTATCATCC
1 CTCCTATC-TCC
934953 CTCCTATCT--
1 CTCCTATCTCC
*
934962 CTACTATCT--
1 CTCCTATCTCC
*
934971 CTCCTGTCTCTC
1 CTCCTATCTC-C
934983 CTCCTATCATCC
1 CTCCTATC-TCC
*
934995 CTCCTCTCTC
1 CTCCTATCTC
935005 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.49, G:0.03, T:0.39
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:934955 original size:42 final size:42
Alignment explanation
Indices: 934905--935014 Score: 184
Period size: 42 Copynumber: 2.6 Consensus size: 42
934895 CCTCTTCTTG
*
934905 TCATCCCTCCTCTCTCTATTATCTCTCCTGTCTCTCCTCCTA
1 TCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTCCTCCTA
*
934947 TCATCCCTCCTATCTCTACTATCTCTCCTGTCTCTCCTCCTA
1 TCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTCCTCCTA
* *
934989 TCATCCCTCCTCTCTCTTCTTTCTCT
1 TCATCCCTCCTCTCTCTACTATCTCT
935015 TTGAGGGCTA
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 63 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
TCATCCCTCCTCTCTCTACTATCTCTCCTGTCTCTCCTCCTA
Found at i:934956 original size:24 final size:24
Alignment explanation
Indices: 934920--935005 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
934910 CCTCCTCTCT
* *
934920 CTATTATCTCTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
* *
934944 CTATCATCCCTCC--TATCT-CTA
1 CTATCATCCCTCCTGTCTCTCCTC
934965 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTGTCTCTCCTC
*
934986 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTGTCTCT
935006 TCTTTCTCTT
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 4 0.08
20 5 0.10
21 14 0.29
22 5 0.10
24 21 0.43
ACGTcount: A:0.10, C:0.45, G:0.02, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTGTCTCTCCTC
Found at i:934980 original size:18 final size:18
Alignment explanation
Indices: 934911--934981 Score: 52
Period size: 18 Copynumber: 3.6 Consensus size: 18
934901 CTTGTCATCC
* *
934911 CTCCTCTCTCTATTATCT
1 CTCCTGTCTCTACTATCT
*
934929 CTCCTGTCTCTCCTCCTATCAT
1 CTCCTG--TCT-CTACTATC-T
*
934951 CCCTCCTATCTCTACTATCT
1 --CTCCTGTCTCTACTATCT
934971 CTCCTGTCTCT
1 CTCCTGTCTCT
934982 CCTCCTATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 12
0.69 0.10 0.20
Matches are distributed among these distances:
18 15 0.37
20 4 0.10
21 13 0.32
22 4 0.10
24 5 0.12
ACGTcount: A:0.10, C:0.44, G:0.03, T:0.44
Consensus pattern (18 bp):
CTCCTGTCTCTACTATCT
Found at i:938652 original size:12 final size:11
Alignment explanation
Indices: 938630--938705 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
938620 AGAGAAAGAA
*
938630 GAGAGAGGAGG
1 GAGATAGGAGG
938641 GATGATAGGAGG
1 GA-GATAGGAGG
*
938653 AGAGACAGGA--
1 -GAGATAGGAGG
*
938663 GAGATAGTA--
1 GAGATAGGAGG
938672 GAGATAGGAGG
1 GAGATAGGAGG
938683 GATGATAGGAGGG
1 GA-GATAGGA-GG
*
938696 GAGACAGGAG
1 GAGATAGGAG
938706 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
9 15 0.28
11 5 0.09
12 27 0.51
13 6 0.11
ACGTcount: A:0.38, C:0.03, G:0.50, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:938662 original size:24 final size:24
Alignment explanation
Indices: 938629--938714 Score: 76
Period size: 24 Copynumber: 3.8 Consensus size: 24
938619 AAGAGAAAGA
*
938629 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
938653 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
938671 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* * *
938695 GGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
938715 AGAGAGGGGG
Statistics
Matches: 48, Mismatches: 8, Indels: 12
0.71 0.12 0.18
Matches are distributed among these distances:
18 11 0.23
20 2 0.04
21 6 0.12
22 2 0.04
24 27 0.56
ACGTcount: A:0.41, C:0.02, G:0.47, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:938681 original size:42 final size:42
Alignment explanation
Indices: 938620--938738 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
938610 TAGCCCTCAA
* *
938620 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
938662 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGGGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
938704 AGAGATAATAGAGAGAGGGGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
938739 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 68 1.00
ACGTcount: A:0.41, C:0.03, G:0.48, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:947567 original size:267 final size:268
Alignment explanation
Indices: 947092--947628 Score: 781
Period size: 267 Copynumber: 2.0 Consensus size: 268
947082 CAAAGAAAAG
*
947092 TTTTCCATGCAAAAGAAAATCATCAATATCAGTTATCCTAATGGGGAGAATGTGTTTATAGAGCC
1 TTTTCCATGCAAAAGAAAATCATCAATATCAGTTATCCTAATGAGGAGAATGTGTTTATAGAGCC
** * *
947157 TAATCACAAAATAAATTTAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTT
66 TAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTA
* * * * *
947222 GATATTGCAAAAATTGGCGGGAAGAAACCCATTCTTGTGAAACCAAAGCATCAGTATCGTGTATC
131 GATATTACAAAAACTAGCGGGAAGAAACCCATTCTTGCGAAACCAAAGCATCAATATCGTGTATC
* *
947287 ATTATGAGAAGACTTTGTTTATGGTGCCTAATCTCGAAAAGAATAGGG-TTAGCATGAGTACTCA
196 ATTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATAGGGATTAGCATGACTACTCA
947351 TGTTTGTC
261 TGTTTGTC
* * *
947359 TTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGGGCC
1 TTTTCCATGCAAAAGAAAATCATCAATATCAGTTATCCTAATGAGGAGAATGTGTTTATAGAGCC
* * * *
947424 TAATCGCAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTA
66 TAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTA
* * * *
947489 GA-ATTTACAAAAACTAGTGGGAAGAAAGCCTTTCTTGCGAAACCAAGGCATCAATATCGTGTAT
131 GATA-TTACAAAAACTAGCGGGAAGAAACCCATTCTTGCGAAACCAAAGCATCAATATCGTGTAT
* * * * * * *
947553 CCTTTTGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTT
195 CATTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATAGGGATTAGCATGACTACTC
947618 ATGTTTGTC
260 ATGTTTGTC
947627 TT
1 TT
947629 ATTAAGAGAC
Statistics
Matches: 238, Mismatches: 30, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
266 1 0.00
267 215 0.90
268 22 0.09
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (268 bp):
TTTTCCATGCAAAAGAAAATCATCAATATCAGTTATCCTAATGAGGAGAATGTGTTTATAGAGCC
TAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACTTA
GATATTACAAAAACTAGCGGGAAGAAACCCATTCTTGCGAAACCAAAGCATCAATATCGTGTATC
ATTATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAAGAATAGGGATTAGCATGACTACTCA
TGTTTGTC
Found at i:949084 original size:474 final size:474
Alignment explanation
Indices: 948180--949216 Score: 1477
Period size: 474 Copynumber: 2.2 Consensus size: 474
948170 TCTTTGTCAG
* * * * * *
948180 ATTTGAGTCACGAACTCAGACTTTACGAAAATTGGTGGGAAGAAAGTCTTTCTTGCG-AACCAAA
1 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
* *
948244 GCATCAATATCATGTATACTTATGAGAATACTATGTTTATGGTAACTAATCTCGAAAAGAATGGA
66 GCATCAATATCATGTAT-CTTATGAGAAGACTATGTTTATGGTAACTAATCTCGAAAACAATGGA
* ** * * * *
948309 GATTTGTATGACTATTGTTGTTTGTCCTATTTCAGAGGCAAACTTTGATTCTATCGAAAATGATG
130 GATTAGTATGACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATCAAAAATGATG
*
948374 GAAAGAAAAGCATTTCTTACGACACCAAAGAATCAATGTCATGTATCCTAACGAAGGTATGCATT
195 GAAAGAAAAGCATTTCTTACGACACCAAAGAATCAATGTCATGTATCCTAACGAAGGAATGCATT
* * * *
948439 TTCGGTTCCCAAACTTGAAAAGACTAGAGACTATTATGAAAGTCAATGCTTGTCTTATTTAAGGG
260 TTAGGTTCCCAAACCTGAAAAGAATAGAGACTATTACGAAAGTCAATGCTTGTCTTATTTAAGGG
948504 GTGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCAAT
325 GTGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCAAT
*
948569 ATCATTTATCCTAATGAGGAGGACGTGCTTATAGTGCCTAATCACAAATTGAATGAAGATCATTA
390 ATCATTTATCCTAATGAGGAGGACGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
948634 GTAGAATCCATGTTTGTCTC
455 GTAGAATCCATGTTTGTCTC
* * *
948654 ATTTGGGGCATGAACTTAGACTTTACAAAAACTAGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
1 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
* **
948719 GCATCAATATCATGTATCTTTTTGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAACAATGG
66 GCATCAATATCATGTATC-TTATGAGAAGACTATGTTTATGGTAACTAATCTC-GAAAACAATGG
*
948783 -GTATTAGTATGACTATTCATGTTTGTCTTA-TTAAGAGACAAACTTTGACTCTATCAAAAATTG
129 AG-ATTAGTATGACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATCAAAAA-TG
* * * *
948846 -TGTAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAAGGAATG
192 ATGGAAAGAAAAGCATTTCTTACGACACCAAAGAATCAATGTCATGTATCCTAACG-AAGGAATG
* * * * * * *
948910 -TTTTTAGGTTCTCGATCCTGAAAATAATGGAGACTATTACGAGAA-TCGATGCTTGTCTTATTT
256 CATTTTAGGTTCCCAAACCTGAAAAGAATAGAGACTATTACGA-AAGTCAATGCTTGTCTTATTT
* *
948973 AAGGGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCA
320 AAGGGGTGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAA
* * *
949038 TCAATATCATTTATCCTAATGAGGGGGACGTGTTTATAGTGCCTAATTACAAAATGAATGAAGAT
385 TCAATATCATTTATCCTAATGAGGAGGACGTGCTTATAGTGCCTAATCACAAAATGAATGAAGAT
*
949103 CATTCGTAGAATCCATGTTTGTCTC
450 CATTAGTAGAATCCATGTTTGTCTC
* *
949128 ATTTGAGGCATGAA--T--ACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACC-AA
1 ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
* *
949188 GCATCCATATCATGTATCCTTATAAGAAG
66 GCATCAATATCATGTAT-CTTATGAGAAG
949217 TGATGTGAAC
Statistics
Matches: 502, Mismatches: 53, Indels: 21
0.87 0.09 0.04
Matches are distributed among these distances:
469 26 0.05
470 40 0.08
472 1 0.00
474 338 0.67
475 97 0.19
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (474 bp):
ATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
GCATCAATATCATGTATCTTATGAGAAGACTATGTTTATGGTAACTAATCTCGAAAACAATGGAG
ATTAGTATGACTATTCATGTTTGTCCTATTTAAGAGACAAACTTTGACTCTATCAAAAATGATGG
AAAGAAAAGCATTTCTTACGACACCAAAGAATCAATGTCATGTATCCTAACGAAGGAATGCATTT
TAGGTTCCCAAACCTGAAAAGAATAGAGACTATTACGAAAGTCAATGCTTGTCTTATTTAAGGGG
TGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATAATCAATA
TCATTTATCCTAATGAGGAGGACGTGCTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAG
TAGAATCCATGTTTGTCTC
Found at i:952200 original size:18 final size:18
Alignment explanation
Indices: 952170--952216 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
952160 ATCTTCTTCT
952170 CTCCTC-CTCCTATCATCC
1 CTCCTCTCT-CTATCATCC
* *
952188 CTCCTCTCTCTATTATCT
1 CTCCTCTCTCTATCATCC
*
952206 CTCCTATCTCT
1 CTCCTCTCTCT
952217 CCTCCTGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 23 0.92
19 2 0.08
ACGTcount: A:0.11, C:0.47, G:0.00, T:0.43
Consensus pattern (18 bp):
CTCCTCTCTCTATCATCC
Found at i:957899 original size:474 final size:474
Alignment explanation
Indices: 954607--961709 Score: 8189
Period size: 474 Copynumber: 15.0 Consensus size: 474
954597 GTTTTCATCA
* * *
954607 TTTATGGTGCCTAGT-CTCGAAGAGAATGGTGATT-GTTATGACTATTCATGTTTGTCTTATTTA
1 TTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTTATTTA
* * * *
954670 AGAGACAAACTTTG-TTCTATCAAAAACGGTGGGAAGAAAAGCTTTTCTTGCGACACCAAATCAA
64 AGAGACAAACTTTGATTCTATCAAAAACGGT-GGAAAAAAAGCATTTCTTGCGACACCAAAGCAT
* * * * *
954734 CAATGTCTTGTATCCTAATGAAAGGAATGTGTTTTTGGTTCCCAATCCTGAAAATAATGGAGACT
128 CAATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACT
* * * * * * * *
954799 ATTATGAGCATCGATGCTTGTCTTATTT--AAGGTATGAACATTGGTTTTAAGGAAGAT-AGAGC
193 GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGG--TGAACTTTGATTTTATGGAAAATAAG-GC
* * **
954861 AAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTT
255 AAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATT
* * * * ** *
954926 TATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCTTGTTTGTCACATTTCTGTC
319 TATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGC
* * * * * * * *
954991 ATGAACTCAGATTTTACGAAAATTGGTAGGAAGAAAGTCTTTCTTGTGAAACCAAAGCATCAATA
384 ACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* *
955056 TCATGTATACTTATGAGAATACTATG
449 TCATGTATCCTTATGAGAAGACTATG
** * * * * *
955082 TTTATGGTAACTAATCCCGAAAAGAATGGAGATTTGTATGACTATT-ATTGTTTGTCCTATTTCA
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCA-TGTTTGTCTTATTTAA
* * * * *
955146 GAGGCAAACTTTGGTTCCATCAAAAAAGGTGCAAAGAAAAGCATTTCTTGCGACACCAAAGCATC
65 GAGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCATC
* * * * * * * * **
955211 AATGTCATGTATCCTGACGAAGGGTATGCGTTTTCA-GTTCCCAAACATGAAAAGACTGGACTCT
129 AATGTCATGTATCCTAACGAAGGGAATGTGTTTT-AGGTTCCCAATCCTAAAAATAATGGAGACT
* * * **
955275 ATTTCGAGAATCGATGC-TGATCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAA-AAGGGCA
193 GTTACGAGAATCGATGCTTG-TCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAA-GGCA
* * * * * **
955338 AAGAAAAGATTTTCACGCAAAAGAAAATCATAAATATCATTTATCCTAATCACGAGGATGTGTTT
256 AAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGATG-CATT
* * * *
955403 TATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCCTCATTTGAGGG
319 TATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGC
* * ** * *
955468 ACAAACTTACACTTTACAAAATTTGGTGGGAAGAAAGCCTTGCTTGC-AAATCCAAAGCTTCAAT
384 ACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAA-CCAAAGCATCAAT
* * *
955532 ATCTTGTATCATTTTTGAGAAGACTATG
448 ATCATGTATC-CTTATGAGAAGACTATG
** * * * *
955560 TTTATGGCCCCTAATCTTGAAAAGAATAGGGATTAGTATGACTATTTATGTTTGTCTTATTTAGG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
955625 AGACAAACTTTGATTCAATCAAAAATGGTGTAAAGAAAAACTTTTCTTACGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCATCA
* * *
955690 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCACAATCTTGAAAATAATGGAGACTGT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* * * * * * *
955755 TACGAGCATCGATGCTTGTCTTATTT--AAGGTATAAACATTGATTTTAAGAAAAATAGGGCAAA
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGG--TGAACTTTGATTTTATGGAAAATAAGGCAAA
** * **
955818 GAAAACTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTAT
258 GAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTAT
* * * *
955883 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAGTCCATGTTTATCTTATTTGAGGCACG
322 AGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * *
955948 AACTTAGACTTTACAAAAACTGGTTGGAAGAAAGCCATTCTTGCGAAACAAAAGCATCAATGTCA
387 AACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCA
*
956013 TGTATCCTTATGAGAAGACTTTG
452 TGTATCCTTATGAGAAGACTATG
* *
956036 TTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTTTTATTTAA
1 TTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAA
* * *
956100 GAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAAGCA-TTCTTGCAACACCAAAGCTT
65 GAGACAAACTTTGATTCTATCAAAAACGGTGG--AAAAAAAGCATTTCTTGCGACACCAAAGCAT
* **
956164 CAATGTCATGTAACCTAATAAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACT
128 CAATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACT
* * ** * * *
956229 GTTATGAGAATCGATGCTTGTCTTCTTT-ATGGGATGAACATTGATTTTAAGGAGAATAAGGCAA
193 GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGG-TGAACTTTGATTTTATGGAAAATAAGGCAA
** * * * * * ** *
956293 AGGCAAGATTTCTACGCAAAAAAAATCATCAATAACATTTATCCTAATAAGGAGAATGTGTTTTT
257 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTAT
* * * * * * *
956358 AGTGCCTAATCACTAAATGAATGAGGATCTTTAGAAGAATTCAAGTTTGTGTCATTTGAGGCACG
322 AGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
956423 AACTTAGACTTTACAAAAACTGGTGGAAAGAAAGCCTTTAC-TGCAAAACCAAAGTATCAATATC
387 AACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATC
* * *
956487 ATGTACCCTTTTGATAAGACTATG
451 ATGTATCCTTATGAGAAGACTATG
* * * *
956511 ATTATGGTGCCGACTCCTGAAAAGAATGGGGATTAGTATGACTA-TCATGTTTATCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * *
956575 AGCCAAACTTTGATTCTAT-AGAAAACAGTGGAAAGAAAAGCATTTCTTGTGATACCAAAGCATT
66 AGACAAACTTTGATTCTATCA-AAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCA-T
* * * * *** * * * * *
956639 CAAAGTCATGCATCCTAACGAAGGGTATGTGGTTTCCATTCCCAAACTTGAAAA-ACTGGTGACT
128 CAATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACT
* * * *
956703 GTTATGAGAATTGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGAAAAATAGGGCAAA
193 GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAA
*
956768 GAAAAGATTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCATTTA
258 GAAAAGATTTCCATGC--AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTA
* *
956833 TAGTGTCTAATCACAAAATGAATGAAGATCATTGGTAGAA-CTCATGTTTGTCTCATTTGAGGCA
321 TAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGTTTGTCTCATTTGAGGCA
* * *
956897 CGAACTTGGACTTTACAAAAATTGGTGGGGAGAAAGCCTTTAC-TGCGAAACCAAAGCATCAATA
385 CGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATA
* *
956961 TCATGTA-CTCTTTTAAGAAGACTATG
449 TCATGTATC-CTTATGAGAAGACTATG
* * *
956987 ATTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * ** *
957052 AGGCAAACTTTGATTCTAT-AGAAAACGGTAGAGTGAAAAGCATTTCTTGTGACACCAAAGCATC
66 AGACAAACTTTGATTCTATCA-AAAACGGTGGA-AAAAAAGCATTTCTTGCGACACCAAAGCATC
* * * * * * * ** * * * *
957116 AAAGTCGTGCATCCTAACGAAGGGTATGCGTTTTTGGTTCCCAA-ACTTGAAAGACTAGAAACTG
129 AATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTG
*
957180 TTACGAGAATCAATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAG
194 TTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAG
* *
957245 AAAAGATTTCCATGTAGAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGA--CATGTTTA
259 AAAAGATTTCCATGCA-AAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCA--TTTA
* * * *
957308 TAGTGCCTAAACACAAAATGAATGAAGATCACTAGTAGAGTCCATGTTTGTCTAATTTGAGGCAC
321 TAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
957373 GAACTTAGACTTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAACCAAAGCGTCAATAT
386 GAACTTAGAC-TTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATAT
** * *
957438 CATGTATCCAAATGAAAAGGCTATG
450 CATGTATCCTTATGAGAAGACTATG
* * * * *
957463 TTTACGGTGGCTAATCCTGAAAAGAATAGGGATTAGTAAGAGTATTCATGTTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * *
957528 AGACAAACTTTGATTCTATCAAAAACGGTAGAAAAAAAGC-TTTCTTGCAACAACAAAGCATCAA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCATTTCTTGCGACACCAAAGCATCAA
* * * *
957592 TGTCATGTAACCTAAAGAAGGGAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGATTGTT
131 TGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTT
* * * ** * *
957657 GCGAGAATCGATGCTTATCTTCTTT-ATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGG
196 ACGAGAATCGATGCTTGTCTTGTTTAAAAGG-TGAACTTTGATTTTATGGAAAATAAGGCAAAGA
* * **
957721 AAAGATTTCCATGCAAAAAGAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGT
260 AAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAGT
* * * * * *
957786 GCCTAATCATAAAATGAATGATGATCATTACTAGAATCCATGTTTATCTCATTTGAGGTATGAAC
325 GCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * ** *
957851 TTAGACTTTACAAAAATTGGTGGGAAGAAGGCCTTTGCTTATGAAACCAAAGCATCAATATCGTG
390 TTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCATG
* * * *
957916 TATTCATATCATAAGACTATG
454 TATCCTTATGAGAAGACTATG
* * * * * *
957937 TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTGGTTTGACTATTCATTTTTGTGTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * *
958002 AGGCAAACTTCGATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * * * * ** ** * *
958067 AAGTCATGCATCCTAATGAAAGGTATGTGTTTTCGATT-CCAAAACTTGAAAGACTGGAGACTGT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* *
958131 TACGAGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
** * *
958196 AAAGATTTCCATGC-------A--A--AA-GGC---TAT--TAGT-A-GA--ATCCATTTATAGT
260 AAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAGT
***
958240 GCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAAATACGAAC
325 GCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAAC
* * * * * *
958305 TTAGACTTCACAAAAATTGGTGGGAAAAAAATCCTTTCTT-CTGAAACCATAGCACCAATATCAT
390 TTAGACTTTACAAAAACTGGTGGG-AAGAAAGCCTTTCTTGC-GAAACCAAAGCATCAATATCAT
** * *
958369 GTATCCAAATGAAAAGGCTATG
453 GTATCCTTATGAGAAGACTATG
* * * * *
958391 TTTAGGGTGGCTAATCCTGAAAAGAATAGGGA-TAGTATGAGTATTCATGTTTGTCTTGTTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
958455 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGC-TTTCCTGCAACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * *
958519 ATGTCATGTAACCTAAAGAAGAGAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGACTAT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* * ** * * *
958584 TGCGAGAATCGATGCTTGTCTTTTTTAAGTGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGG
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
*
958649 AAAGATTTCCATGCAAAGGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
260 AAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
* *
958714 TGCCTAATCACAAAATGAATGAAGATCATTAGTAG-AGCTCATGTTTGTCTTATTTGAGGCACGA
324 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGTTTGTCTCATTTGAGGCACGA
* **
958778 ACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTAC-TGCGAAACCAAAGCTTCAATATTG
388 ACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCA
*
958842 TGTA-CTCTTTTGAGAAGACTATG
452 TGTATC-CTTATGAGAAGACTATG
* * **
958865 ATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCACGTTAATCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * ** *
958930 AGGCAAA-TTTAATTCTATCGAAAACGGTGGAGTGAAAAGCATTTCTTGGGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGA-AAAAAAGCATTTCTTGCGACACCAAAGCATCA
* * ** * * ** * *
958994 AAGTCATGCATCCTAACGAA-GGATATGCATTTTTGGTTCCCAA-ACTTGAAAGACTGGAGACTG
130 ATGTCATGTATCCTAACGAAGGGA-ATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTG
* *
959057 TTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGAAAAATAGGGCAAAG
194 TTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAG
* * *
959122 AAAAGATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCATTCATA
259 AAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATA
* * * *
959187 GTGCCTAATCACAAAATGAATGAAGATAATTGGTAATTAGTAGAGTCCATGTTTATCTCATGTGA
323 GTGCCTAATCACAAAATGAATGAAG---A----TCATTAGTAGAATCCATGTTTGTCTCATTTGA
* * *
959252 GGCACGAACTTAGACTTGACAAAAACTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCA
381 GGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCA
* * * *
959317 ATATCGTGTATCCTAATGCGAAGACTTTG
446 ATATCATGTATCCTTATGAGAAGACTATG
* * * *
959346 TTTATGGTGCCTAATCTTG-AAAGAATGGGGATTACTATGAGTATTCATGCTTGTCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * *
959410 AGACAAACATTGATTCTATCAAAAAACAGTGGAAAAAAATAGC-TTTCTTGCAACACCAAAGCAT
66 AGACAAACTTTGATTCTATC-AAAAACGGTGG-AAAAAA-AGCATTTCTTGCGACACCAAAGCAT
* * * * *
959474 CAATGTCATGTAACCTAATGAAAGGAATGTGTTTTAGGTTCCCAAACCTAAAAATAGTGGAGACT
128 CAATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACT
* * ** * * *
959539 GTTATGAGAATCGATGCTTGTCTTATTT-ATGGGTTAAACATTGATTTTAAGGAAAATAAGGCAA
193 GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGG-TGAACTTTGATTTTATGGAAAATAAGGCAA
* * * **
959603 AGGAAAGATTTCCATGCAAAACAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
257 AGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTAT
* * * * *
959668 AGTGCCTAATCACAAAATGAAT-AATGATCATTACTAGAATCCATGTTTATCTCTTTTGAGGTAT
322 AGTGCCTAATCACAAAATGAATGAA-GATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCAC
* *
959732 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGCTTACGAAACCAAAGCATCAATAT
386 GAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATAT
* * * *
959797 CGTGTATCCTTATCATAAGAATATG
450 CATGTATCCTTATGAGAAGACTATG
* * * * * *
959822 TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTGGTTTGACTATTCATTTTTGTGTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * * * * *
959887 AGCCAAGCTTTGATTCTATCAAAAATGGGGGAAAGAAAAGCATTTCTTGTGACACCAAAACATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCATCA
* * *
959952 ATGTCATGTATCTTAATGAAGGGAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGACTGT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* * *
960017 TGCGAGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGA
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
* *
960082 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAAGGAGGAGGATGCATTTATAG
260 AAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
*****
960147 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAAATTTGAA
324 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * * * *
960212 CTTAGACTTTACAAAAATTGGTGGGAAAAAATCCTTTCTTGTGAAACCATAGCACCAATATCATG
389 CTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
** * *
960277 TATCCAAATGAAAAGGCTATG
454 TATCCTTATGAGAAGACTATG
* * * * *
960298 TTTACGGTGGCTAATCCTGAAAAGAATAGGGA-TAGTATGAGTATTCATGTTTGTCTTGTTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* *
960362 AGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGC-TTTCTTGCAACACTAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * *
960426 ATGTCATATAACCTAAAGAAGAGAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGACTGT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* * * *
960491 TGCGAGAATCGAAGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAAGGTAAAGA
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
* * * *
960556 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGCGGAGGACGCATTTATTG
260 AAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
*
960621 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACTAA
324 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * * *
960686 TTTAGACTTTACAAAAACTGGTGGGAAAAAAGCCTTTAC-TGCAAAACCAAAGCATCAATATCGT
389 CTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCAT
* * * *
960750 GCACCCTTTTGAGAAGACTGTG
453 GTATCCTTATGAGAAGACTATG
* * * * * *
960772 ATTGTGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTA-TCTTGTTTATCTTATTCAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* * *
960836 AGGCAAACTTTGTTTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGAAA-AAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * * * * ** * *
960901 AAGTCATGCATCCTAACGAAAGGTATGGGTTTTCGGTTCCCAA-ACTTGAAAGACTGGAGACTGT
130 ATGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGT
* * * * *
960965 TATGAGAATCGATGCTTATCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGCTAAGA
195 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
* *
961030 AAAGATTTCCATGCAAAGGAAGATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
260 AAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
* *
961095 TGCCTAATCACAAAATGAATGAAGATCATTAGTAG-AGCTCATGTTTGTCTCATTTGAGGCACGG
324 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGTTTGTCTCATTTGAGGCACGA
* *
961159 ACTTAGACTTTAGAAAAACTGGTGGGAAGAAAGCCTTTAC-TGCGAAACCAAAGCATCAATATCG
388 ACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATCAATATCA
*
961223 TGTA-CTCTTTTGAGAAGACTATG
452 TGTATC-CTTATGAGAAGACTATG
* * **
961246 ATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCACGTTAATCTTATTTAAG
1 TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
* ** ** *
961311 AGGCAAACTTTGATTCTATTGAAAACGGTGGAGTGAAAAGCATTTCTTGTGACACCAAAGCATCA
66 AGACAAACTTTGATTCTATCAAAAACGGTGGA-AAAAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * * ** * *
961376 AAGTCATGCATCCTAACGAA-GGATATGCGTTTTCGGTTCCCAA-ACTTGAAAGACTGGAGACTG
130 ATGTCATGTATCCTAACGAAGGGA-ATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTG
* * * * *
961439 TTATGAGAATCGGTGCTTATCTTGTTTAAAAGGTGAACTTTGATTTTATGAAAAATAGGGCAAAG
194 TTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAG
* *
961504 AAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTCATGAGGAGGACGCATTTATAG
259 AAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAG
* *
961569 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGTCCATGTTTATCTCATTTGAGGCACGAA
324 TGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAA
* * *
961634 CTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCAAAACCAAAGCATCAATGTCATG
389 CTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATG
* *
961699 TAACCTAATGA
454 TATCCTTATGA
961710 AGGGAATGTG
Statistics
Matches: 5664, Mismatches: 835, Indels: 259
0.84 0.12 0.04
Matches are distributed among these distances:
452 48 0.01
453 149 0.03
454 162 0.03
455 9 0.00
456 2 0.00
457 1 0.00
458 3 0.00
460 3 0.00
461 1 0.00
463 2 0.00
464 2 0.00
465 2 0.00
466 2 0.00
468 1 0.00
469 3 0.00
471 3 0.00
472 4 0.00
473 48 0.01
474 1559 0.28
475 1198 0.21
476 1266 0.22
477 509 0.09
478 280 0.05
479 5 0.00
480 46 0.01
481 134 0.02
482 135 0.02
483 87 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (474 bp):
TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAG
AGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAGCATTTCTTGCGACACCAAAGCATCAA
TGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTT
ACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGAA
AAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAGTG
CCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
TAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCATGTA
TCCTTATGAGAAGACTATG
Found at i:960203 original size:159 final size:158
Alignment explanation
Indices: 960021--960670 Score: 377
Period size: 159 Copynumber: 4.1 Consensus size: 158
960011 GACTGTTGCG
* * *
960021 AGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAG
1 AGAATCCATGTTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGGAAAGAAAAG
* * * *
960086 ATTTCCATGCAAAAGAAAATCATCAATATCAT-TCATCCTAAGGAGGAGGATGCATTTATAGTGC
66 ATTT-CATGCAAAACAAAAGCATCAATATCATAT-ATCCTAAAGAAGAGGATGCATTTATAGTGC
960150 CTAATCAC-AAAATGAATGAAGATCATTAGT
129 CTAATC-CTAAAATGAATGAAGATCATTAGT
** ** * * ** *
960180 AGAATCCATGTTTGTCTCATTTGAAATTTGAACTTAGACTTTA-CAAAAATTGGTGGGAAA-AAA
1 AGAATCCATGTTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAA-TAG-GGGAAAGAAA
*** * ** * * * * * **
960243 TCCTTTCTTGTGAAACCATAGCACCAATATCATGTATCC-AAATGAAAAGGCTATG--TTTACGG
64 AGATTTCATGCAAAACAAAAGCATCAATATCATATATCCTAAA-GAAGAGG--ATGCATTTATAG
* * *
960305 TGGCTAATCCTGAAAA-GAAT-AGGGAT-AGTA-T
126 TGCCTAATCCT-AAAATGAATGA-AGATCATTAGT
* * *** * * *
960336 GAGTATTCATGTTTGTCTTGTTT-AAGAGACAAACTTTGATTCTAT-CAAAA-ACGGTGGAAAAA
1 -AGAATCCATGTTTGTCTTGTTTGAA-AGGTGAACTTTGATTTTATGGAAAATA-GG-GGAAAGA
* * * * * * * **
960398 AAAGCTTTCTTGCAACACTAAAGCATCAATGTCATATAACCTAAAGAAGAGAATGTGTTT-TAG-
62 AAAGATTTCATGCAAAACAAAAGCATCAATATCATATATCCTAAAGAAGAGGATGCATTTATAGT
* * * *
960461 GCTCCCAATCCTAAAAAT-AATGGAGA-C-TGTTGCG
127 G--CCTAATCCT-AAAATGAATGAAGATCAT-TAG-T
* * * * *
960495 AGAATCGAAGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAAGGTAAAGAAAAG
1 AGAATCCATGTTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGGAAAGAAAAG
* * * * ** * *
960560 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACGCGGAGGACGCATTTATTGTGCC
66 ATTT-CATGCAAAACAAAAGCATCAATATCATATATCCTAAAGAAGAGGATGCATTTATAGTGCC
960625 TAATCAC-AAAATGAATGAAGATCATTAGT
130 TAATC-CTAAAATGAATGAAGATCATTAGT
960654 AGAATCCATGTTTGTCT
1 AGAATCCATGTTTGTCT
960671 CATTTGAGGC
Statistics
Matches: 351, Mismatches: 104, Indels: 72
0.67 0.20 0.14
Matches are distributed among these distances:
155 5 0.01
156 10 0.03
157 96 0.27
158 104 0.30
159 119 0.34
160 15 0.04
161 2 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.30
Consensus pattern (158 bp):
AGAATCCATGTTTGTCTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGGAAAGAAAAG
ATTTCATGCAAAACAAAAGCATCAATATCATATATCCTAAAGAAGAGGATGCATTTATAGTGCCT
AATCCTAAAATGAATGAAGATCATTAGT
Found at i:961841 original size:316 final size:316
Alignment explanation
Indices: 961364--962009 Score: 875
Period size: 316 Copynumber: 2.0 Consensus size: 316
961354 TTCTTGTGAC
* * * **
961364 ACCAAAGCATCAAAGTCATGCATCCTAACGAAGGATATGCGTTTTCGGTTCCCAAACTTGAAAGA
1 ACCAAAGCATCAATGTCATGCAACCTAACGAAGGATATGCGTTTTAGGTTCCCAAACTAAAAAGA
* * * *
961429 CTGGAGACTGTTATGAGAATCGGTGCTTATCTTGTTTAAAAGGTGAACTTTGATTTTATGAAAAA
66 CTGGAGACTGTTATGAGAATCGATGCTTATCTTATTTAAAAGGTGAACATTGATTTTAAGAAAAA
* * * *
961494 TAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTCATGAGGAGGAC
131 TAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAC
* *
961559 GCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGTCCATGTTTATCTCATTT
196 GCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
* *
961624 GAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCAAA
261 GAGGCACGAACTTAGACTTTACAAAAACTGGCGGGAAGAAAGCCATTGCTTACAAA
* * *
961679 ACCAAAGCATCAATGTCATGTAACCTAATGAAGGGA-ATGTGTTTTAGGTTCCCAAACCTAAAAA
1 ACCAAAGCATCAATGTCATGCAACCTAACGAA-GGATATGCGTTTTAGGTTCCCAAA-CTAAAAA
* * * * ** *
961743 TAGTGGAGACTGTTATGGGAATCGATGCTTGTCTTATTT-ATGGGTTGAACATTGATTTTAAGGA
64 GACTGGAGACTGTTATGAGAATCGATGCTTATCTTATTTAAAAGG-TGAACATTGATTTTAAGAA
* *
961807 AAATAAGGCAAAGGAAAGATTTCCTTGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAG
128 AAATAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAG
* ** * * *
961872 AATGTGTTTATAGTGCGTAATCACAAAATGAATGATGATTATTACTAGAATCCATGTTTATCTCA
193 AACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCA
* * * * **
961937 TTTGAGGTATGAACTTAGACTTTACAAAAATTGGCGGGAAGAAAGCCTTTGCTTATGAA
258 TTTGAGGCACGAACTTAGACTTTACAAAAACTGGCGGGAAGAAAGCCATTGCTTACAAA
961996 ACCAAAGCATCAAT
1 ACCAAAGCATCAAT
962010 ATTGTGTATC
Statistics
Matches: 286, Mismatches: 41, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
315 49 0.17
316 218 0.76
317 19 0.07
ACGTcount: A:0.37, C:0.15, G:0.19, T:0.29
Consensus pattern (316 bp):
ACCAAAGCATCAATGTCATGCAACCTAACGAAGGATATGCGTTTTAGGTTCCCAAACTAAAAAGA
CTGGAGACTGTTATGAGAATCGATGCTTATCTTATTTAAAAGGTGAACATTGATTTTAAGAAAAA
TAAGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAAC
GCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTT
GAGGCACGAACTTAGACTTTACAAAAACTGGCGGGAAGAAAGCCATTGCTTACAAA
Found at i:961952 original size:474 final size:468
Alignment explanation
Indices: 954784--963839 Score: 3765
Period size: 474 Copynumber: 19.1 Consensus size: 468
954774 CCCAATCCTG
* * * * *
954784 AAAAT-AATGGAGACTATTA-TGAGCATCGATGCTTGTCTTATTTAAGGTATGAACATTGGTTTT
1 AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTCTCATTTGAGG--TGAACTTTGATTTT
* * * * *
954847 AAGGAAGATAGAGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAAG
63 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAAT
* * ** * * *
954912 GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCATTACTAGAATCCTTGTTT
127 GAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTT
* ** * * * * * * * * * *
954977 GTCACATTTCTGTCATGAACTCAGATTTTACGAAAATTGGTAGGAAGAAAGTCTTTCTTGTGAAA
192 GTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAA
* * * * ** * **
955042 CCAAAGCATCAATATCATGTATACTTATG-A--GAATACTATGTTTATGGTAACTAATCCCGAAA
257 CCAAAGCATCAATATCATGTATCCTAATGAAGGGAAT-GTGT-TTTA-GGTGCCCAATCCTAAAA
* * ** * * * * * ** **
955104 AGAATGGAGA-TTTGTATGACTATTATTGTTTGTCCTATTTCAGAGGCAAACTTTG-GTTCCATC
319 ATAATGGAGACTGT-TATGAGAATCA-TGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTAAGG
* * ** * * * **
955167 AAAAAAGGTGCAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTGACGAA
381 AAAATAGG-GCAAAGAAAAG-ATTTCTTGC-AAAAAAAATCATCAATATCATTTATCCT-AATAA
* * * * * *
955232 GG-GTATGCGTTTTCAGTTCCCAAACATG
442 GGAGAATGTGTTTT-AGTGCCTAATCA-C
* ** * * * *
955260 AAAA-GACTGGACTCTATTTCGAGAATCGATGC-TGATCTTATTTAAGGGGTGAACTTTGATTTT
1 AAAATGAATGGAGACTATTACTAGAATCGATGCTTG-TCTCATTT--GAGGTGAACTTTGATTTT
* * *
955323 ATGGAAAAA-AGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATAAATATCATTTATCCTAA
63 AT-GAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAA
* * * ** * *
955387 TCACGAGGATGTGTTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
126 TGAGGAGGACG-CATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGT
* * * * **
955452 TTGCCTCATTTGAGGGACAAACTTACACTTTACAAAATTTGGTGGGAAGAAAGCC-TTGCTTGC-
190 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCG
* * * ** * * * * *
955515 AAATCCAAAGCTTCAATATCTTGTATCATTTTTG-AGAAGACTATG-TTTATGG-CCCCTAATCT
254 AAA-CCAAAGCATCAATATCATGTATC-CTAATGAAG-GGAATGTGTTTTA-GGTGCCC-AATCC
* * * * * * *
955577 TGAAAAGAATAGG-GATTAG-TATGACTATTTATGTTTGTCTTATTT-AGGAGACAAACTTTGA-
314 TAAAAATAAT-GGAGACT-GTTATGA-GAATCATGCTTGTCTTATTTAAGG-G-CAAACTTTGAT
* ** * * * ** * * *
955638 TTCAATCAAAA-ATGGTGTAAAGAAAA-ACTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
374 TTTAAGGAAAATA-GG-GCAAAGAAAAGA--TTTCTTGC-AAAAAAAATCATCAATATCATTTAT
* * **
955701 CCTAACGAAGG-GAATGTGTTTTAGGTTCAC-AATCTTG
434 CCTAA-TAAGGAGAATGTGTTTTA-GTGC-CTAATC-AC
* * * * * * *
955738 AAAAT-AATGGAGACTGTTACGAGCATCGATGCTTGTCTTATTTAAGGTATAAACATTGATTTTA
1 AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTGAGG--TGAACTTTGATTTTA
* **
955802 AGAAAAATAGGGCAAAGAAAACTTTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG
64 TGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAATG
** * * *
955867 AGGAGGACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAGTCCATGTTTA
128 AGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTG
* *
955932 TCTTATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTTGGAAGAAAGCCATTCTTGCGAAAC
193 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAAC
* * * * * * * *
955997 AAAAGCATCAATGTCATGTATCCTTATG-AGAAGACTTTG-TTTATGGTGCCTAAT-CTCGAAAA
258 CAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTGTTTTA-GGTGCCCAATCCT-AAAAA
* * * * * * * * * ***
956059 GAATGGGGATTAG-TATGAGTATTCATGTTTGTTTTATTTAAGAGACAAACATTGATTCTATCAA
320 TAATGGAGACT-GTTATGAG-AATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTAAGGA
** * * ** * * * * *
956123 AAACGGTGGAAAAAAAAAGCA-TTCTTGCAACACCAAAGCTTCAATGTCATGTAACCTAATAAAG
382 AAATAG-GGCAAAGAAAAG-ATTTCTTGCAA-AAAAAATCATCAATATCATTTATCCTAAT-AAG
* *
956187 G-GAATGTGTTTTAGGTTCCCAATC-C
443 GAGAATGTGTTTTA-GTGCCTAATCAC
* * *
956212 TAAAAAT-AATGGAGACTGTTA-TGAGAATCGATGCTTGTCTTCTTTATG-GGATGAACATTGAT
1 --AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTC-TCATT-TGAGG-TGAACTTTGAT
* * * * ** * * *
956274 TTTAAGGAGAATAAGGCAAAGGCAAGATTTCTACGCAAAAAAAATCATCAATAACATTTATCCTA
60 TTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTA
* * * ** * * * * * * *
956339 ATAAGGAGAATGTGTTTTTAGTGCCTAATCACTAAATGAATGAGGATCTTTAGAAGAATTCAAGT
125 ATGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGT
* * * *
956404 TTGTGTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGAAAGAAAGCCTTTAC-TGCA
190 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCG
* * ** * * * * * * *
956468 AAACCAAAGTATCAATATCATGTACCCTTTTGATA-AGACTATG-ATTATGGTGCCGACTCCTGA
254 AAACCAAAGCATCAATATCATGTATCCTAATGA-AGGGAATGTGTTTTA-GGTGCCCAATCCTAA
* * * ** * * * *
956531 AAAGAATGGGGATTAG-TATGACTATCATGTTTATCTTATTTAAGAGCCAAACTTTGATTCTATA
317 AAATAATGGAGACT-GTTATGAGAATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTA-A
* * * ** * **
956595 -GAAAACAGTGG-AAAGAAAAGCATTTCTTGTGATACCAAAGCATTCAA-AGTCATGCATCCTAA
379 GGAAAATAG-GGCAAAGAAAAG-ATTTCTTG-CAAAAAAAATCA-TCAATA-TCATTTATCCTAA
* * * * * * **
956657 CGAAGG-GTATGTGGTTTCCA-TTCCCAAACTTG
439 -TAAGGAGAATGT-GTTT-TAGTGCCTAATC-AC
* * * * ** *
956689 AAAA--ACTGGTGACTGTTA-TGAGAATTGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTT
1 AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTCTCATTT--GAGGTGAACTTTGATTTT
956751 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAAATCATCAATATCATTTATCCTAA
63 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAAAAAATCATCAATATCATTTATCCTAA
* *
956816 TGAGGAGGACGCATTTATAGTGTCTAATCACAAAATGAATGAAGATCATTGGTAGAA-CTCATGT
126 TGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGT
* * * *
956880 TTGTCTCATTTGAGGCACGAACTTGGACTTTACAAAAATTGGTGGGGAGAAAGCCTTTAC-TGCG
190 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCG
* * * * *
956944 AAACCAAAGCATCAATATCATGTACTCTTTTAA-GAA--GACTATG-ATTATGGTGCCTAATCCT
254 AAACCAAAGCATCAATATCATGTA-TC--CTAATGAAGGGAATGTGTTTTA-GGTGCCCAATCCT
* * * * * * *
957005 GAAAAA-AATGGGGATTAG-TATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTC
315 -AAAAATAATGGAGACT-GTTATGA-GAATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTT
* ** * * ** * * **
957068 TATA-GAAAA-CGGTAG-AGTGAAAAGCATTTCTTGTGACACCAAAGCATCAA-AGTCGTGCATC
376 TA-AGGAAAATAGG--GCAAAGAAAAG-ATTTCTTG-CAAAAAAAATCATCAATA-TCATTTATC
* * * * * * * **
957129 CTAACGAAGG-GTATGCGTTTTTGGTTCCCAAACTT
435 CTAA-TAAGGAGAATGTG-TTTTAGTGCCTAATCAC
* * * * * * * ** *
957164 GAAA-GACTAGAAACTGTTACGAGAATCAATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTA
1 AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTT--GAGGTGAACTTTGATTTTA
* * * *
957228 TGGAAAATAAGGCAAAGAAAAGATTTCCATGTAGAAGAAAATCATCAATATCATTTATCCTAATG
64 TGAAAAATAGGGCAAAGAAAAGATTTCCATGCA-AAAAAAATCATCAATATCATTTATCCTAATG
*** * * *
957293 AGGAGGACATGTTTATAGTGCCTAAACACAAAATGAATGAAGATCACTAGTAGAGTCCATGTTTG
128 AGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTG
*
957358 TCTAATTTGAGGCACGAACTTAGACTTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAA
193 TCTCATTTGAGGCACGAACTTAGAC-TTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAA
* * * * * * * *
957423 CCAAAGCGTCAATATCATGTATCCAAATGAAAAGG-CTATG-TTTACGGTGGCTAATCCTGAAAA
257 CCAAAGCATCAATATCATGTATCCTAATG-AAGGGAATGTGTTTTA-GGTGCCCAATCCTAAAAA
* * * * * * * **
957486 GAATAGG-GATTAG-TAAGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-ATC
320 TAAT-GGAGACT-GTTATGAG-AATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTAAGG
* * * * * * * * * *
957548 AAAA-ACGGTAGAAAAAAAGCTTTCTTGCAACAACAAAGCATCAATGTCATGTAACCTAAAGAAG
381 AAAATAGGGCA-AAGAAAAGATTTCTTGCAA-AAAAAATCATCAATATCATTTATCCT-AATAAG
*
957612 G-GAATGTGTTTTAG-GCTCCCAATC-C
443 GAGAATGTGTTTTAGTG--CCTAATCAC
* * * * * *
957637 TAAAAAT-AATGGAGATTGTTGCGAGAATCGATGCTTATCTTCTTTATG-GGATGAACTTTGATT
1 --AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTC-TCATT-TGAGG-TGAACTTTGATT
* * * * *
957700 TTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAAGAATCATCAATATCATTTATCCTAA
61 TTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAA
* * ** * * *
957765 TGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGATGATCATTACTAGAATCCATGTT
126 TGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTT
* * * * * * **
957830 TATCTCATTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAGGCCTTTGCTTATGA
191 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCGA
* * * * * * *
957895 AACCAAAGCATCAATATCGTGTATTCATATCAT-AA--GACTATG-TTTATGGTGCCTAATCTTG
255 AACCAAAGCATCAATATCATGTA-TCCTA--ATGAAGGGAATGTGTTTTA-GGTGCCCAATCCTA
* * * * ** * * *
957956 AAAAGAATAGG-GATTGGTT-TGACTATTCATTTTTGTGTTATTTAAGAGGCAAACTTCGATTCT
316 AAAATAAT-GGAGACT-GTTATGA-GAATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTT
** * * * * ** * **
958019 ATCGAAAA-CGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAA-AGTCATGCATCCTA
377 AAGGAAAATAGG-GCAAAGAAAAG-ATTTCTTG-CAAAAAAAATCATCAATA-TCATTTATCCTA
* * * * * * **
958082 ATGAAAG-GTATGTGTTTTCGATTCCAAAACTT
438 AT-AAGGAGAATGTGTTTTAG-TGCCTAATCAC
* * * * **
958114 GAAA-GACTGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTTTGATTTTA
1 AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTG--AGGTGAACTTTGATTTTA
* ** *
958178 TGGAAAATAGGGCAAAGAAAAGATTTCCATGC----AAAA--GGC----T-A-TTA--GT-A-GA
64 TGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGA
*
958227 --A--TC-CATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGT
129 GGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGT
*** * * * * *
958287 CTCATTTGAAATACGAACTTAGACTTCACAAAAATTGGTGGGAAAAAAATCCTTTCTT-CTGAAA
194 CTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGG-AAGAAAGCCATTCTTGC-GAAA
* * * * * * * * *
958351 CCATAGCACCAATATCATGTATCCAAATGAAAAGG-CTATG-TTTAGGGTGGCTAATCCTGAAAA
257 CCAAAGCATCAATATCATGTATCCTAATG-AAGGGAATGTGTTTTA-GGTGCCCAATCCTAAAAA
* * * * * * **
958414 GAATAGG-GA-TAG-TATGAGTATTCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTCT-ATC
320 TAAT-GGAGACT-GTTATGAG-AATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTAAGG
* * * * ** * * * *
958475 AAAA-ACGGTGGAAAAAAAAGCTTTCCTGCAACACCAAAGCATCAATGTCATGTAACCTAA-AGA
381 AAAATA-GG-GCAAAGAAAAGATTTCTTGCAA-AAAAAATCATCAATATCATTTATCCTAATA-A
* *
958538 AGAGAATGTGTTTTAG-GCTCCCAATC-C
442 GGAGAATGTGTTTTAGTG--CCTAATCAC
* * ** *
958565 TAAAAAT-AATGGAGACTATTGCGAGAATCGATGCTTGTCTTTTTTAAGTGATGAACTTTGATTT
1 --AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTGAG-G-TGAACTTTGATTT
* * * * *
958629 TAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAGGAAAATCATCAATATCATTTATCCTAA
62 TATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATCCTAA
* *
958694 TGAGGAGGATGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAG-AGCTCATGT
126 TGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGT
* *
958758 TTGTCTTATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTAC-TGCG
190 TTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCG
* ** ** * * * * * *
958822 AAACCAAAGCTTCAATATTGTGTA-CTCTTTTG-AGAAGACTATG-ATTATGGTGCCTAATCCTG
254 AAACCAAAGCATCAATATCATGTATC-CTAATGAAG-GGAATGTGTTTTA-GGTGCCCAATCCTA
* * * * * * * * *
958884 AAAAGAATGGGGATTAG-TATGACTATTCACG-TTAATCTTATTTAAGAGGCAAA-TTTAATTCT
316 AAAATAATGGAGACT-GTTATGA-GAATCATGCTT-GTCTTATTTAAG-GGCAAACTTTGATTTT
** * * ** * * ** * **
958946 ATCGAAAA-CGGTGGAGTGAAAAGCATTTCTTGGGACACCAAAGCATCAA-AGTCATGCATCCTA
377 AAGGAAAATAGG-GCAAAGAAAAG-ATTTCTT-GCAAAAAAAATCATCAATA-TCATTTATCCTA
* * * * * * **
959009 ACGAAGGA-TATGCAT-TTTTGGTTCCCAAACTT
438 A-TAAGGAGAATG--TGTTTTAGTGCCTAATCAC
* * * * ** *
959041 GAAA-GACTGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTA
1 AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTT--GAGGTGAACTTTGATTTTA
*
959105 TGAAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAAAAAATCATCAATATCATTTATCCTAATG
64 TGAAAAATAGGGCAAAGAAAAGATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCTAATG
* * *
959170 AGGAGGACGCATTCATAGTGCCTAATCACAAAATGAATGAAGATAATTGGTAATTAGTAGAGTCC
128 AGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAG---A----TCATTAGTAGAATCC
* * *
959235 ATGTTTATCTCATGTGAGGCACGAACTTAGACTTGACAAAAACTGGTGGGAAGAAAGCCATTCTT
186 ATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTT
* * * * *
959300 GCAAAACCAAAGCATCAATATCGTGTATCCTAATGCGAA--GACTTTG-TTTATGGTGCCTAAT-
251 GCGAAACCAAAGCATCAATATCATGTATCCTAAT--GAAGGGAATGTGTTTTA-GGTGCCCAATC
** * * * ** * * *
959361 CTTGAAAGAATGGGGATTACTATGAGTATTCATGCTTGTCTTATTTAAGAGACAAACATTGATTC
313 CTAAAAATAATGGAGACTGTTATGAG-AATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATT-
* * * ** * * * *
959426 TATCAA--AAAACAGTGG-AAAAAAATAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAAC
375 T-T-AAGGAAAATAG-GGCAAAGAAA-AGATTTCTTGCAA-AAAAAATCATCAATATCATTTATC
* * * *
959488 CTAATGAAAG-GAATGTGTTTTAGGTTCCCAAAC-C
435 CTAAT-AAGGAGAATGTGTTTTA-GTGCCTAATCAC
* * * * *
959522 TAAAAAT-AGTGGAGACTGTTA-TGAGAATCGATGCTTGTCTTATTT-ATGGGTTAAACATTGAT
1 --AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTCTCATTTGA--GG-TGAACTTTGAT
* * * * *
959584 TTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAACAAATCATCAATATCATTTATCCTA
60 TTTATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTA
* * ** *
959649 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT-AATGATCATTACTAGAATCCATG
125 ATGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAA-GATCATTAGTAGAATCCATG
* * * * * * *
959713 TTTATCTCTTTTGAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTGCTTAC
189 TTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGC
* * * * * * * *
959778 GAAACCAAAGCATCAATATCGTGTATCCTTATCATA-AGAATATG-TTTATGGTGCCTAATCTTG
253 GAAACCAAAGCATCAATATCATGTATCCTAATGA-AGGGAATGTGTTTTA-GGTGCCCAATCCTA
* * * * ** * * * *
959841 AAAAGAATAGG-GATTGGTT-TGACTATTCATTTTTGTGTTATTTAAGAGCCAAGCTTTGATTCT
316 AAAATAAT-GGAGACT-GTTATGA-GAATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTT
*** * * * ** * * *
959904 ATCAAAAATGGGGGAAAGAAAAGCATTTCTTGTGACACCAAAA-CATCAATGTCATGTATCTTAA
377 AAGGAAAATAGGGCAAAGAAAAG-ATTTCTTG-CA-AAAAAAATCATCAATATCATTTATCCTAA
*
959968 TGAAGG-GAATGTGTTTTAG-GCTCCCAATC-C
439 T-AAGGAGAATGTGTTTTAGTG--CCTAATCAC
* * * **
959998 TAAAAAT-AATGGAGACTGTTGCGAGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTTTGATTT
1 --AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTG--AGGTGAACTTTGATTT
* *
960062 TATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTCATCCTAA
62 TATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAA
* *
960127 GGAGGAGGATGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTT
126 TGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTT
***** * * * * *
960192 TGTCTCATTTGAAATTTGAACTTAGACTTTACAAAAATTGGTGGGAAAAAATCCTTTCTTGTGAA
191 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAA
* * * * * * * * *
960257 ACCATAGCACCAATATCATGTATCCAAATGAAAAGG-CTATG-TTTACGGTGGCTAATCCTGAAA
256 ACCAAAGCATCAATATCATGTATCCTAATG-AAGGGAATGTGTTTTA-GGTGCCCAATCCTAAAA
* * * * * * *
960320 AGAATAGG-GA-TAG-TATGAGTATTCATGTTTGTCTTGTTTAAGAGACAAACTTTGATTCT-AT
319 ATAAT-GGAGACT-GTTATGAG-AATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTTTAAG
* * * * ** * * * *
960381 CAAAA-ACGGTGGAAAAAAAAGCTTTCTTGCAACACTAAAGCATCAATGTCATATAACCTAA-AG
380 GAAAATA-GG-GCAAAGAAAAGATTTCTTGCAA-AAAAAATCATCAATATCATTTATCCTAATA-
* *
960444 AAGAGAATGTGTTTTAG-GCTCCCAATC-C
441 AGGAGAATGTGTTTTAGTG--CCTAATCAC
* * * * **
960472 TAAAAAT-AATGGAGACTGTTGCGAGAATCGAAGCTTGTCTTGTTTGAAAGGTGAACTTTGATTT
1 --AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTG--AGGTGAACTTTGATTT
* * *
960536 TATGGAAAATAAGGTAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA
62 TATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTTATCCTAA
* * *
960601 CGCGGAGGACGCATTTATTGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTT
126 TGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTT
* * * * *
960666 TGTCTCATTTGAGGCACTAATTTAGACTTTACAAAAACTGGTGGGAAAAAAGCCTTTAC-TGCAA
191 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCGA
* * * ** * * * *
960730 AACCAAAGCATCAATATCGTGCACCCTTTTG-AGAAGACTGTGATTGT-GGTGCCTAATCC-AGA
255 AACCAAAGCATCAATATCATGTATCCTAATGAAG-GGAATGTG-TTTTAGGTGCCCAATCCTA-A
* * * ** * * * *
960792 AAAGAATGGGGATTAG-TATGACTATCTTGTTTATCTTATTCAAGAGGCAAACTTTG-TTTCT-A
317 AAATAATGGAGACT-GTTATGAGAATCATGCTTGTCTTATTTAAG-GGCAAACTTTGATTT-TAA
** * * * ** * **
960854 TCAAAA-ACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAA-AGTCATGCATCCTAA
379 GGAAAATA-GG-GCAAAGAAAAG-ATTTCTTG-CAAAAAAAATCATCAATA-TCATTTATCCTAA
* * * * * * * * **
960917 CGAAAG-GTATGGGTTTTCGGTTCCCAAACTT
439 -TAAGGAGAATGTGTTTT-AGTGCCTAATCAC
* * * * **
960948 GAAA-GACTGGAGACTGTTA-TGAGAATCGATGCTTATCTTGTTTGAAAGGTGAACTTTGATTTT
1 AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTCTCATTTG--AGGTGAACTTTGATTTT
* * * *
961011 ATGGAAAATAGGGCTAAGAAAAGATTTCCATGCAAAGGAAGATCATCAATATCATTTATCCTAAT
63 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAA-AAAAATCATCAATATCATTTATCCTAAT
* *
961076 GAGGAGGATGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAG-AGCTCATGTT
127 GAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATC-CATGTT
* * *
961140 TGTCTCATTTGAGGCACGGACTTAGACTTTAGAAAAACTGGTGGGAAGAAAGCCTTTAC-TGCGA
191 TGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCGA
* ** * * * * * *
961204 AACCAAAGCATCAATATCGTGTA-CTCTTTTG-AGAAGACTATG-ATTATGGTGCCTAATCCTGA
255 AACCAAAGCATCAATATCATGTATC-CTAATGAAG-GGAATGTGTTTTA-GGTGCCCAATCCTAA
* * * * * * * *
961266 AAAGAATGGGGATTAG-TATGACTATTCACG-TTAATCTTATTTAAGAGGCAAACTTTGATTCTA
317 AAATAATGGAGACT-GTTATGA-GAATCATGCTT-GTCTTATTTAAG-GGCAAACTTTGATTTTA
** * * ** * * ** * **
961329 TTGAAAA-CGGTGGAGTGAAAAGCATTTCTTGTGACACCAAAGCATCAA-AGTCATGCATCCTAA
378 AGGAAAATAGG-GCAAAGAAAAG-ATTTCTTG-CAAAAAAAATCATCAATA-TCATTTATCCTAA
* * * * * * * **
961392 CGAAGGA-TATGCGTTTTCGGTTCCCAAACTT
439 -TAAGGAGAATGTGTTTT-AGTGCCTAATCAC
* * * * * ** *
961423 GAAA-GACTGGAGACTGTTA-TGAGAATCGGTGCTTATCTTGTTTAAAAGGTGAACTTTGATTTT
1 AAAATGAATGGAGACTATTACT-AGAATCGATGCTTGTCTCATTT--GAGGTGAACTTTGATTTT
*
961486 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTCATG
63 ATGAAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATG
* *
961551 AGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGTCCATGTTTA
128 AGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTG
*
961616 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCAAAAC
193 TCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAAC
* * * * *
961681 CAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCCAAACCTAAAAATAG
258 CAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTAGGTGCCCAATCCTAAAAATAA
* * ** *
961746 TGGAGACTGTTATGGGAATCGATGCTTGTCTTATTTATGGGTTGAACATTGATTTTAAGGAAAAT
323 TGGAGACTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGG-CAAACTTTGATTTTAAGGAAAAT
* *
961811 AAGGCAAAGGAAAGATTTCCTTGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
386 AGGGCAAAGAAAAGATTT-CTTGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATG
*
961876 TGTTTATAGTGCGTAATCAC
450 TGTTT-TAGTGCCTAATCAC
* * * * * *
961896 AAAATGAAT-GATGATTATTACTAGAATCCATGTTTATCTCATTTGAGGTATGAACTTAGACTTT
1 AAAATGAATGGA-GACTATTACTAGAATCGATGCTTGTCTCATTTGAGG--TGAACTTTGATTTT
* * ** * * ** * ** *
961960 A-CAAAAATTGGCGGGAAG-AAAGCCTTTGCTTATG-AAACCAAAGCATCAATATTGTGTATCCT
63 ATGAAAAATAGG-GCAAAGAAAAG-ATTT-C-CATGCAAAAAAAATCATCAATATCATTTATCCT
* * ** * **** * ** ** * * *
962022 TATCATAAGAATATGTTTATGGTGCCTAATCTTGAAAA-GAAT--AG-GGATTGGTTTGACTATT
124 AATGAGGAGGACGCATTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTAG-TAGA--ATC
* * * * *
962083 CATTTTTGTGTTATTTAAGAGC-C-AAGCTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG-
185 CATGTTTGTCTCATTTGAG-GCACGAA-CTTAGACTT-TA-CAAAAACTGGTGGG-AAG-AAAGC
* * * *
962142 CATTTCTTGCGACACCAAAACATCAATGTCATGTATCTTAATGAAGGGAATGTGTTTTAGGCT-C
244 CA-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTAGG-TGC
** * * **
962206 CCAATCCTAAAAATAATGGAGACTGTTGCGAGAATCGATGCTTGTCTTGTTTGAAAGGTGAACTT
307 CCAATCCTAAAAATAATGGAGACTGTTATGAGAATC-ATGCTTGTCTTATTT-AAGGGCAAACTT
* * *
962271 TGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTCA
370 TGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CTTGCAAAA-AAAATCATCAATATCATTTA
* ** * ** *
962336 TCATAAGGAGGAGGATGCATTTATATTGCCTAATCAC
433 TCCTAATAAGGAGAATGTGTTT-TAGTGCCTAATCAC
** * * * * * * *
962373 AAAATGAATAAAGA-TCATTAGTAGAA-CTAATGTTTTTCTCATTTGAGGCAGGAACTTAGACTT
1 AAAATGAATGGAGACT-ATTACTAGAATC-GATGCTTGTCTCATTTGAGG--TGAACTTTGATTT
** * * * * * *
962436 TA-GAAAAACT-GGTGGGATG-AAAGCCTTTAC-TGCAAAACCAAATCATCAATATCGTGTA-CT
62 TATGAAAAA-TAGG-GCAAAGAAAAG-ATTTCCATGCAAAA-AAAATCATCAATATCATTTATC-
** * * * * **
962496 CTTTTGA-GAAGAC-TATGATTATGGTGCGTAATC-CTGAAAA-GAATG--G-GGATTAGTATGA
122 CTAATGAGGAGGACGCAT--TTATAGTGCCTAATCAC--AAAATGAATGAAGATCATTAGTA-GA
* ** * * * * *
962554 CTATTCATGTTAATTTTATTTAAGAGGCA--AACTTTGA-TTCTATCGAAAACGAC-GGAGTG-A
182 --ATCCATGTTTGTCTCATTT--GAGGCACGAACTTAGACTT-TA-C-AAAA--ACTGGTGGGAA
* ** * * ** * *
962614 -AAAG-CATTTCTTGTGGCACCAAAGCATCAA-AGTCTTGCATCCTAACAAAGGGTATTTGTTTT
238 GAAAGCCA-TTCTTGCGAAACCAAAGCATCAATA-TCATGTATCCTAATGAAGGGAATGTGTTTT
* * * * ** * *
962676 AGGTTCCCAAACTTGAAAGACTAA---AGACTGTTACAAGAATCGATGCTTGTCTTGTTTAAAAG
301 AGGTGCCCAATCCT-AAA-AATAATGGAGACTGTTATGAGAATC-ATGCTTGTCTTATTT-AAGG
** * * * *
962738 GTGAACTTTTATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCCTGCAAAAAAAAAATCATCAA
362 GCAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CTTGC--AAAAAAAATCATCAA
* * ** *
962803 TATCATTTATCCTAATAAGGAGGACGCATTTATACTGCCTAATCAC
424 TATCATTTATCCTAATAAGGAGAATGTGTTT-TAGTGCCTAATCAC
* * * * * * * * *
962849 AAAATAAATGAAGA-TCATTAGTAGAGTCCATG-TTGTCTCATTTAAGGCACGAACTTAGACTTT
1 AAAATGAATGGAGACT-ATTACTAGAATCGATGCTTGTCTCATTTGAGG--TGAACTTTGATTTT
* ** * ** * * * *
962912 A-CAAAAACT-GGTGGGAAG-AAAGCCA-TT-CTTGCGAAACCAAAGCATTAATATCGTGTATCC
63 ATGAAAAA-TAGG-GCAAAGAAAAG--ATTTCCATGC-AAAAAAAATCATCAATATCATTTATCC
* * * *** * * ** * * * *
962972 TTATG-CGAAGACTTTGTTTAT-GATGCCTAATCTCGAAA-GAATGGGGATTAGTA-TGAGTATT
123 TAATGAGGAGGAC-GCATTTATAG-TGCCTAATCACAAAATGAATGAAGATCATTAGT-AGAATC
* * * * *
963033 CATGTTTGTCTTATTT-AAG-A-GAAACATT-GA-TTCCATCAAAAAC-GGTGGAAAAAAAAG-C
185 CATGTTTGTCTCATTTGAGGCACG-AAC-TTAGACTT-TA-CAAAAACTGGTGG-GAAGAAAGCC
* * * * *
963091 TTTCCTGC-AACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTAGGTTCCC
245 ATTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTAGGTGCCC
** * ** *
963155 AATCCTAAAAATAATGGAGACCATTATGAGAATCGATGCTTGTCTTCTTTATTGG-ATGAACATT
309 AATCCTAAAAATAATGGAGACTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGGCA--AACTTT
* * * *
963219 GATTTTAAGTAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAAAAAATCATCAATATCATTTAT
371 GATTTTAAGGAAAATAGGGCAAAGAAAAGATTT-CTTGC-AAAAAAAATCATCAATATCATTTAT
*
963284 CCTAATGAGGAGAATGTGTTTATAGTGCCTAATCAC
434 CCTAATAAGGAGAATGTGTTT-TAGTGCCTAATCAC
* * * * *
963320 AAAATGAAT-GATGA-TCATTACTAGAATCCATGTTTATCTCATTTGAGGTATGAACTTAGACTT
1 AAAATGAATGGA-GACT-ATTACTAGAATCGATGCTTGTCTCATTTGAGG--TGAACTTTGATTT
* * ** * * * * ** * * * *
963383 TA-CAAAAATTGGTGGGAAG-AAAGCCTTTGCTTACGAAACTAAAGCATCAATATCGTGTGTCCT
62 TATGAAAAATAGG-GCAAAGAAAAG-ATTTCCATGC-AAAAAAAATCATCAATATCATTTATCCT
* * * * * * ** * ** * *
963446 TATCA-TAAGAC-TATGTTTATGGTGCCTAATCTTGAAAA-GAAT-AGGGATTGGTTTG-AGTAT
124 AATGAGGAGGACGCA--TTTATAGTGCCTAATC-ACAAAATGAATGA-AGA-TCATTAGTAGAAT
* * * * * *
963506 TCATTTTTGTGTTATTTAAGAGC-C-AAGCTTTGA-TTCTATCAAAAA-TGG-GGGAAAGAAAAG
184 CCATGTTTGTCTCATTTGAG-GCACGAA-CTTAGACTT-TA-CAAAAACTGGTGGG-AAG-AAAG
* * ** * * *
963566 -CATTTCTTGCGACACCAAAACATCAACGTCATGTATCTTAATGAAGGGAATGTGTTCTAGGTTC
243 CCA-TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTAGGTGC
* * *
963630 CCAATCCTGAAAATAATGGAGACTGTTCTGAGAATCGATGCTTGTCTTATTTAAGGG-ATTAATT
307 CCAATCCTAAAAATAATGGAGACTGTTATGAGAATC-ATGCTTGTCTTATTTAAGGGCA--AACT
* * * *
963694 TTGATTATAAGGAAAA-ATTGG-AAAGAAAAGATTTCCATGCAAAAGAAAATGATCAATATCATT
369 TTGATTTTAAGGAAAATA-GGGCAAAGAAAAGATTT-CTTGCAAAA-AAAATCATCAATATCATT
* * *
963757 TATCTTAA-AGAGGAGAATGTATTTATAGTGGCTAATCAC
431 TATCCTAATA-AGGAGAATGTGTTT-TAGTGCCTAATCAC
* * * *
963796 AAAATGAATGAAGA-TCATTACTAGAATCCATGTTTGTCCCATTT
1 AAAATGAATGGAGACT-ATTACTAGAATCGATGCTTGTCTCATTT
963840 AAAGTGCGAA
Statistics
Matches: 7073, Mismatches: 1092, Indels: 830
0.79 0.12 0.09
Matches are distributed among these distances:
450 1 0.00
451 8 0.00
452 52 0.01
453 138 0.02
454 148 0.02
455 10 0.00
457 1 0.00
458 4 0.00
459 2 0.00
460 2 0.00
461 1 0.00
463 3 0.00
464 2 0.00
465 2 0.00
466 3 0.00
468 1 0.00
469 11 0.00
470 7 0.00
471 151 0.02
472 150 0.02
473 193 0.03
474 1664 0.24
475 1381 0.20
476 1643 0.23
477 821 0.12
478 266 0.04
479 16 0.00
480 50 0.01
481 133 0.02
482 123 0.02
483 83 0.01
484 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (468 bp):
AAAATGAATGGAGACTATTACTAGAATCGATGCTTGTCTCATTTGAGGTGAACTTTGATTTTATG
AAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTTATCCTAATGAGG
AGGACGCATTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCT
CATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCTTGCGAAACCAA
AGCATCAATATCATGTATCCTAATGAAGGGAATGTGTTTTAGGTGCCCAATCCTAAAAATAATGG
AGACTGTTATGAGAATCATGCTTGTCTTATTTAAGGGCAAACTTTGATTTTAAGGAAAATAGGGC
AAAGAAAAGATTTCTTGCAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTT
AGTGCCTAATCAC
Found at i:962561 original size:476 final size:477
Alignment explanation
Indices: 961645--963876 Score: 2696
Period size: 476 Copynumber: 4.7 Consensus size: 477
961635 TTAGACTTTA
* * *
961645 CAAAAACTGGTGGG-AAG-AAAGCCA-TTCTTGCAAAACCAAAGCATCAATGTCATGTAACCTAA
1 CAAAAA-TGG-GGGAAAGAAAAG-CATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAA
* * * *
961707 TGAAGGGAATGTGTTTTAGGTTCCCAAACCTAAAAATAGTGGAGACTGTTATGGGAATCGATGCT
63 TGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGATGCT
** * * * *
961772 TGTCTTATTTATGGGTTGAACATTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCTTGC-A
128 TGTCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAA
* * *
961836 AAAAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCGTAATCACAAAAT
193 AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAAT
* * *
961901 GAATGATGATTATTACTAGAATCCATGTTTATCTCATTTGAGGTATGAACTTAGACTTTACAAAA
258 GAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAA
* * *** * *
961966 ATTGGCGGGAAGAAAGCCTTTGCTTATGAAACCAAAGCATCAATATTGTGTATCCTTATCATAAG
323 ACTGGTGGGAAGAAAGCCTTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATCAGAAG
* * * * *
962031 AATATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTGGTTTGACTATTCATTTTTGTGTTA
388 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTGTTA
*
962096 TTTAAGAGCCAAGCTTTGATTCTAT
453 TTTAAGAGCCAAACTTTGATTCTAT
* *
962121 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAACATCAATGTCATGTATCTTAATGA
1 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* *
962186 AGGGAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGAATCGATGCTTGT
66 AGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
* * *
962251 CTTGTTTGAAAGG-TGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAA
131 CTTATTT-AAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAA
* * * * * * *
962315 GAAAATCATCAATATCATTCATCATAAGGAGGAGGATGCATTTATATTGCCTAATCACAAAATGA
195 AAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGA
* * * * * *
962380 ATAAAGATCATTAGTAGAA-CTAATGTTTTTCTCATTTGAGGCAGGAACTTAGACTTTAGAAAAA
260 ATGAAGATCATTACTAGAATC-CATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAA
* * * * *
962444 CTGGTGGGATGAAAGCCTTTAC-TGCAAAACCAAATCATCAATATCGTGTA-CTCTTTTGAGAAG
324 CTGGTGGGAAGAAAGCCTTTGCTTGCAAAACCAAAGCATCAATATCGTGTATC-CTTATCAGAAG
* * * ** *
962507 ACTATGATTATGGTGCGTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTAATTTTA
388 ACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTGTTA
*
962572 TTTAAGAGGCAAACTTTGATTCTAT
453 TTTAAGAGCCAAACTTTGATTCTAT
* * ** ** * * * * * **
962597 CGAAAACGACGGAGTGAAAAGCATTTCTTGTGGCACCAAAGCATCAAAGTCTTGCATCCTAACAA
1 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* * * * * *
962662 AGGGTATTTGTTTTAGGTTCCCAAACTTGAAAGACTAA---AGACTGTTACAAGAATCGATGCTT
66 AGGGAATGTGTTTTAGGTTCCCAATCCT-AAA-AATAATGGAGACTGTTACGAGAATCGATGCTT
* * * * * *
962724 GTCTTGTTTAAAAGG-TGAACTTTTATTTTATGAAAAATAGGGCAAAGAAAAGATTTCCCTGCAA
129 GTCTTATTT-AAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC-A
* * * * *
962788 AAAAAAAATCATCAATATCATTTATCCTAATAAGGAGGACGCATTTATACTGCCTAATCACAAAA
192 AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAA
* * * * * *
962853 TAAATGAAGATCATTAGTAGAGTCCATG-TTGTCTCATTTAAGGCACGAACTTAGACTTTACAAA
257 TGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAA
* * *
962917 AACTGGTGGGAAGAAAGCCATT-CTTGCGAAACCAAAGCATTAATATCGTGTATCCTTATGC-GA
322 AACTGGTGGGAAGAAAGCCTTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTAT-CAGA
* * * * *
962980 AGACTTTGTTTATGATGCCTAAT-CTCG-AAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
386 AGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTG
* *
963043 TTATTTAAGAG--AAACATTGATTCCAT
450 TTATTTAAGAGCCAAACTTTGATTCTAT
* * * * * *
963069 CAAAAACGGTGGAAAAAAAAGC-TTTCCTGCAACACCAAAGCATCAATGTCATGTAACCTAATGA
1 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
** *
963133 AGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACCATTATGAGAATCGATGCTTGT
66 AGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
* ** * * *
963198 CTTCTTTATTGGATGAACATTGATTTTAAGTAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAA
131 CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAA
*
963263 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA
196 AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAA
* * *
963328 TGATGATCATTACTAGAATCCATGTTTATCTCATTTGAGGTATGAACTTAGACTTTACAAAAATT
261 TGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAACT
* * * * *
963393 GGTGGGAAGAAAGCCTTTGCTTACGAAACTAAAGCATCAATATCGTGTGTCCTTATCATAAGACT
326 GGTGGGAAGAAAGCCTTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATCAGAAGACT
* * * * *
963458 ATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTGGTTTGAGTATTCATTTTTGTGTTATTT
391 ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTGTTATTT
*
963523 AAGAGCCAAGCTTTGATTCTAT
456 AAGAGCCAAACTTTGATTCTAT
* * *
963545 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAACATCAACGTCATGTATCTTAATGA
1 CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
* *
963610 AGGGAATGTGTTCTAGGTTCCCAATCCTGAAAATAATGGAGACTGTT-CTGAGAATCGATGCTTG
66 AGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTAC-GAGAATCGATGCTTG
* * * * *
963674 TCTTATTTAAGGGATTAATTTTGATTATAAGGAAAA-ATTGG-AAAGAAAAGATTTCCATGCAAA
130 TCTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATA-AGGCAAAGAAAAGATTTCCATGCAAA
* * * * *
963737 AGAAAATGATCAATATCATTTATCTTAAAGAGGAGAATGTATTTATAGTGGCTAATCACAAAATG
194 AAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATG
* * * * *
963802 AATGAAGATCATTACTAGAATCCATGTTTGTCCCATTTAAAGTGC--GAATTTAGATTTTACAAA
259 AATGAAGATCATTACTAGAATCCATGTTTATCTCATTT-GAG-GCATGAACTTAGACTTTACAAA
*
963865 AATTGGTGGGAA
322 AACTGGTGGGAA
963877 AAAAATACTT
Statistics
Matches: 1499, Mismatches: 226, Indels: 62
0.84 0.13 0.03
Matches are distributed among these distances:
469 4 0.00
470 3 0.00
471 143 0.10
472 150 0.10
473 56 0.04
474 92 0.06
475 192 0.13
476 592 0.39
477 262 0.17
478 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
CAAAAATGGGGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA
AGGGAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTACGAGAATCGATGCTTGT
CTTATTTAAAGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAAAA
AAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAATGAA
TGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCATGAACTTAGACTTTACAAAAACT
GGTGGGAAGAAAGCCTTTGCTTGCAAAACCAAAGCATCAATATCGTGTATCCTTATCAGAAGACT
ATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTGTGTTATTT
AAGAGCCAAACTTTGATTCTAT
Found at i:966456 original size:39 final size:39
Alignment explanation
Indices: 966402--966479 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
966392 ACTTCACTCA
966402 CAGTCCGAGGGGTTGGCCAATCTTTTATAGCTTTAATCT
1 CAGTCCGAGGGGTTGGCCAATCTTTTATAGCTTTAATCT
966441 CAGTCCGAGGGGTTGGCCAATCTTTTATAGCTTTAATCT
1 CAGTCCGAGGGGTTGGCCAATCTTTTATAGCTTTAATCT
966480 TTTCCTCATC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.36
Consensus pattern (39 bp):
CAGTCCGAGGGGTTGGCCAATCTTTTATAGCTTTAATCT
Found at i:967797 original size:16 final size:17
Alignment explanation
Indices: 967754--967803 Score: 50
Period size: 16 Copynumber: 3.1 Consensus size: 17
967744 TTAACAACCA
*
967754 ATTCCTTTTGGCTTATC
1 ATTCCTTTTGGCTGATC
* *
967771 AAT-CTTGTGGC-GATC
1 ATTCCTTTTGGCTGATC
*
967786 ATTCCTTTTGGCTTATC
1 ATTCCTTTTGGCTGATC
967803 A
1 A
967804 ATCTTGTGAT
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
15 5 0.20
16 14 0.56
17 6 0.24
ACGTcount: A:0.16, C:0.22, G:0.16, T:0.46
Consensus pattern (17 bp):
ATTCCTTTTGGCTGATC
Found at i:968916 original size:12 final size:11
Alignment explanation
Indices: 968894--968969 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
968884 AGAGAAAGAA
*
968894 GAGAGAGGAGG
1 GAGATAGGAGG
968905 GATGATAGGAGG
1 GA-GATAGGAGG
968917 AGAGATAGGA--
1 -GAGATAGGAGG
*
968927 GAGATAGTA--
1 GAGATAGGAGG
968936 GAGATAGGAGG
1 GAGATAGGAGG
968947 GATGATAGGAGG
1 GA-GATAGGAGG
*
968959 AGAGACAGGAG
1 -GAGATAGGAG
968970 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:968930 original size:33 final size:30
Alignment explanation
Indices: 968884--968974 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
968874 TAGCCCTCAA
* *
968884 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
968917 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
968947 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
968975 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:968939 original size:11 final size:9
Alignment explanation
Indices: 968914--968974 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
968904 GGATGATAGG
968914 AGGAGAGAT
1 AGGAGAGAT
968923 AGGAGAGAT
1 AGGAGAGAT
*
968932 AGTAGAGAT
1 AGGAGAGAT
*
968941 AGGAGGGAT
1 AGGAGAGAT
* *
968950 --GATAG-G
1 AGGAGAGAT
*
968956 AGGAGAGAC
1 AGGAGAGAT
968965 AGGAGAGAT
1 AGGAGAGAT
968974 A
1 A
968975 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:968945 original size:42 final size:42
Alignment explanation
Indices: 968884--969002 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
968874 TAGCCCTCAA
* * *
968884 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
968926 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
968968 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
969003 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:975368 original size:567 final size:567
Alignment explanation
Indices: 974294--975428 Score: 2013
Period size: 567 Copynumber: 2.0 Consensus size: 567
974284 GGAATAGATT
974294 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
1 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
974359 CTTGGCCTCTTAATAAGATCCAAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACAC
66 CTTGGCCTCTTAATAAGATCCAAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACAC
* *
974424 AAAAATGTGTTTAATCTGAAAATATGAATGTCTGCCCCCTCCAAATATGTTTACAAGAGCTTATA
131 AAAAATGTGTTTAATCTGAAAATATCAATGTCTGCCCCCTCCAAATATGTTTACAAGAACTTATA
* *
974489 TATTCCCTCATAAGTCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAATTC
196 TATGCCCTCATAAGCCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAATTC
974554 TTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGG
261 TTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGG
974619 CCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATAT
326 CCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATAT
* *
974684 GCAATTAACTAGCTTGGGCTCTTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCA
391 GCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGGGCCTACTTTCAAATAGGCCAGCAACCA
* *
974749 TCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCC
456 TCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTTCC
* * * *
974814 AATGCCTTCAGGTCTTTGTCTTCAATGGACCTACCTTGGTTTTCATC
521 AATGCCATCAAGTCATTGTATTCAATGGACCTACCTTGGTTTTCATC
974861 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
1 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
*
974926 CTTGGCCTCTTGATAAGATCCAAAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
66 CTTGGCCTCTTAATAAGATCC-AAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
* * *
974991 C-AAAATGTGTTTAATCTGCAAATATCAATGTCTTCCCCCTCCAAATCTGTTTACAAGAACTTAT
130 CAAAAATGTGTTTAATCTGAAAATATCAATGTCTGCCCCCTCCAAATATGTTTACAAGAACTTAT
* * *
975055 ATATGCCCTGATAAGCCATAGTTAACATAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAACT
195 ATATGCCCTCATAAGCCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAA-T
*
975120 T-TTAGTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCA
259 TCTTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCA
*
975184 GGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCTAAATAT
324 GGCCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATAT
975249 ATGCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGGGCCTACTTTCAAATAGGCCAGCAAC
389 ATGCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGGGCCTACTTTCAAATAGGCCAGCAAC
* *
975314 CATCTTCTCTAGGTTTTCCTTTATCCTCTTTGCCTTTGCCCTTGTCATTGGTCCTTGAAACCCTT
454 CATCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTT
**
975379 CCAATGCCATCAAGTCATTGTATTCAATGGACCTTGCTTGGTTTTCATC
519 CCAATGCCATCAAGTCATTGTATTCAATGGACCTACCTTGGTTTTCATC
975428 A
1 A
975429 ATTAGTAGAA
Statistics
Matches: 541, Mismatches: 25, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
567 495 0.91
568 46 0.09
ACGTcount: A:0.32, C:0.25, G:0.14, T:0.29
Consensus pattern (567 bp):
AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCGCCACAAGAGT
CTTGGCCTCTTAATAAGATCCAAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACAC
AAAAATGTGTTTAATCTGAAAATATCAATGTCTGCCCCCTCCAAATATGTTTACAAGAACTTATA
TATGCCCTCATAAGCCATAGATAACACAAACCCTAAGGGGCTTATTATGCTAACAAGCCCAATTC
TTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGG
CCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATAT
GCAATTAACTAGCTTAGGCTCTTCTAACTCCAAATTGGGCCTACTTTCAAATAGGCCAGCAACCA
TCTTCTCTAGGTCTTCCTTTATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTTCC
AATGCCATCAAGTCATTGTATTCAATGGACCTACCTTGGTTTTCATC
Found at i:976319 original size:475 final size:470
Alignment explanation
Indices: 975429--977017 Score: 2026
Period size: 475 Copynumber: 3.3 Consensus size: 470
975419 GTTTTCATCA
* * * *
975429 ATTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAACACTGGTGCGAG
1 ATTAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAA-ACTGGTGGGAA
* * * *
975494 GAAAGCCTTTACTGTGAAATCAAAGCATCAATATCATGTACCCTTTTAAGAAGACTATGATTATA
65 GAAAGCCTTTACTGCGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTATGATTATG
* * * *
975559 GTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACCATTCATGTTTATCTTATTTATGAGGCAA
130 GTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAA
* * * * *
975624 ACTTTAATTCTATCAAAAACGGAGGAAAGAAAAGCATTTCTTGTGACGCCAAAGCATCAAAGTCA
195 ACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCA
* * * * **
975689 TGTATCCTATTGAAGGGTATGCATTTTTGGTTCCCAAACTTGAAAGACTGGAGACTGTTATGAGA
260 TGTAACCTAATGAAGGGTATGC-GTTTCGGTTCCCAAACTAAAAAGACTGGAGACTGTTATGAGA
* * * * * *
975754 ATCGTTGGTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATT
324 ATTGATGCTTGTCTTATTT-AAGGGTGAACTTTGATTTTAAGGAAAATAA-GCAAAGAAAAGATT
* *
975819 TCCACGCAAAAAAAAATCATCAATATCTTTTATCCTAATGAGGAGGACGTGTTGATAGTGCCTAA
387 TCCACGC-AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTATAGTGCCTAA
975884 TCACAAAATGAATGAAGATC
451 TCACAAAATGAATGAAGATC
*
975904 ATTAGTAGATTCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACATAAACTGGTGGGAA
1 ATTAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACA-AAACTGGTGGGAA
* * * * * * *
975969 GAACGCCATT-CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTAT
65 GAAAGCCTTTAC-TGCGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTATGATTAT
* ** *
976033 GGTGCCTAAT-CTAGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGCCTTATTTAAGAGAT
129 GGTGCCTAATCCT-GAAAAGAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGAC
* * * *
976097 AAACATTGATTCTATCAAAAACGGTGAAAAAAAAAAGC-TTTCTTGCAG-CACCAAAGTATCAAT
193 AAACTTTGATTCTATCAAAAACGGTG-GAAAGAAAAGCATTTCTTG-AGACACCAAAGCATCAAT
* * * * *
976160 GTCATGTAACCTAATGAAGGGAATGTGTTTCAGGTTCCCAATACTAAAAATAATGGAGACTATTA
256 GTCATGTAACCTAATGAAGGGTATGCGTTTC-GGTTCCCAA-ACTAAAAAGACTGGAGACTGTTA
* * * *
976225 TGAGAATTAATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATACAGCAAAGGAA
319 TGAGAATTGATGCTTGTCTTATTTAAGGG-TGAACTTTGATTTTAAGGAAAATA-AGCAAAGAAA
* * * ** *
976290 AGATTTCTATGCAAAAAAAATCATCAATATCATTTATCCTAAGGAGGAAAATGTGTTTATAGTGC
382 AGATTTCCACGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTATAGTGC
976355 CTAATCACAAAATGAATGAAGATC
447 CTAATCACAAAATGAATGAAGATC
* * *
976379 ATTAGTAGAATCCATATTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAGCTGGTGGGAA
1 ATTAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAA-CTGGTGGGAA
* * * * * *
976444 GAAAGCCTTTA-TAGCAAAACCAAAGTATCAATATCATGGACCCTTTTGAGAAGACGATGTTTAG
65 GAAAGCCTTTACT-GCGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTATGATTAT
* * *
976508 GGCGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTAATCTTATTTAAGAGACA
129 GGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACA
* *
976573 AACTTTGATTCTATTAAAAATGGTGGAAAGAAAAGCATTTCTT-ATGACACCAAAGCATCAATGT
194 AACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGA-GACACCAAAGCATCAATGT
* * * * * * *
976637 CATATATA-CTAACGAAGGGTATGCGTTTTCGATTCCCAAACTTGAAAAGACTAGAAACTGTTGT
258 CATGTA-ACCTAATGAAGGGTATGCG-TTTCGGTTCCCAAAC-TAAAAAGACTGGAGACTGTTAT
* * *
976701 GAGAATTGATGCTTG-CTTATTTAAGGGGTCAACATTGATTTTATA-GAAAATAGGGCAAAGAAA
320 GAGAATTGATGCTTGTCTTATTTAA-GGGTGAACTTTGATTTTA-AGGAAAATA-AGCAAAGAAA
* * *
976764 AGATTTCCACGCAATAGAAAATCATCAATATCAATTATCCTAATGAGGAGGACATGTTTATAGTG
382 AGATTTCCACGCAA-AAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTATAGTG
976829 CCTAATCACAAAATGAATGAAGATC
446 CCTAATCACAAAATGAATGAAGATC
* * *
976854 ATTAGTAGAGTCCATGTTTATCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA
1 ATTAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTAC-AAAACTGGTGGGAA
* * *
976919 GAAAGCCTTAACTGCGAAACCTAAGCATCAATATCGTGTACCCTTTTGAGAAGACTATGATTATG
65 GAAAGCCTTTACTGCGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTATGATTATG
*
976984 GTGCCTAATCCTGAAAAGAATAAGGATTAGTATG
130 GTGCCTAATCCTGAAAAGAATAGGGATTAGTATG
977018 TGATGACAAC
Statistics
Matches: 954, Mismatches: 136, Indels: 48
0.84 0.12 0.04
Matches are distributed among these distances:
473 1 0.00
474 69 0.07
475 781 0.82
476 102 0.11
477 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (470 bp):
ATTAGTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAACTGGTGGGAAG
AAAGCCTTTACTGCGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTATGATTATGG
TGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGACAAA
CTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGAGACACCAAAGCATCAATGTCAT
GTAACCTAATGAAGGGTATGCGTTTCGGTTCCCAAACTAAAAAGACTGGAGACTGTTATGAGAAT
TGATGCTTGTCTTATTTAAGGGTGAACTTTGATTTTAAGGAAAATAAGCAAAGAAAAGATTTCCA
CGCAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTATAGTGCCTAATCACA
AAATGAATGAAGATC
Found at i:978633 original size:474 final size:470
Alignment explanation
Indices: 977710--980361 Score: 3019
Period size: 474 Copynumber: 5.6 Consensus size: 470
977700 GGTTTTCATC
*
977710 AGTATGACTA-TCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAATGGTGGAAA
1 AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * *
977774 GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTTAAGTATCCTAACGAAGGGTATGAGTTTTC
66 GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTTA
* * * *
977839 GGTTCCCAGA-CTTGAAAGACTGGAGACTGTTACGAGAATTGATGCTGGTCTTGTTTAAGAGGTG
131 GGTTCCCA-ACCTTAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAG-GGTG
* * *
977903 AACTTTTA-TTTATGGAAAATAGGGCAAA-GAAGAGATTCCCATGCAAAAGAAAATCATCAATAT
194 AACTTTGATTTTAAGGAAAATAGGGCAAAGGAA-AGATTTCCATGCAAAAGAAAATCATCAATAT
977966 CATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGT
258 CATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGT
*
978031 A-AAGTCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAA
323 AGAA-TCCATGTTTGTCTCA--TGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAG
* * * * * *
978095 CCATTCCTGCGAAACGAGAGCATCAATATCGTGTATCCTTA-TATGAAGACTTTGTTTATGGTGC
385 CCTTTCTTGCGAAACCAAAGCATCAA-ATCATGTATCCTTATTA-GAAGACTATGTTTATGGTGC
*
978159 CTAAT-CTCAAAAGGAATGGGGATT
448 CTAATCCTGAAAA-GAAT-GGGATT
* * * * * * * *
978183 AGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTAATACTATAAAAAATGGTGGAAA
1 AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGG---
* * * *
978248 AAAAAAAAGC-TTTCTTGC-AGCACCAAAGCATCAATGTCATGTAACCTAATGAAGCGAATGTGT
63 AAAGAAAAGCATTTCTTGCGA-CACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGT
* * * * * * * *
978311 TTTAGGTTCCCAATCCTAAAAATAATGGAGACTATTATGGGAATCCATGCTTGTCTTCTTTATGG
127 TTTAGGTTCCCAA-CCTTAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAGG
* * *
978376 GATGAACTTTGATATTAAGGAAAATAAGGCAAAGGAAAGATTTTCATGCAAAA-AAAATCATCAA
191 G-TGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAA
* * *
978440 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGATGATCATT
255 TATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATT
* * * * * *
978505 ACTAGAATCCATGTTTATCTCA-AAGGTATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAG
320 AGTAGAATCCATGTTTGTCTCATGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAG
*
978569 CCTTTTCTTACGAAACCAAAGCATCAAATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCC
385 CC-TTTCTTGCGAAACCAAAGCATCAAATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCC
978634 TAATCCTGAAAAGAATGGGAGTT
449 TAATCCTGAAAAGAATGGGA-TT
* * * * * * * *
978657 GGCT-CGACTATTCATTTTTGTGTTATTTAAGAGCCAAGCTTTGATTCTATCAAAAACGGGGGAA
1 AG-TATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAA
* * * *
978721 AGAAAAGCGTTTCTTGCGACACC-AAGACATCAATGTCATGTATCTTAATGAAGGGAATGTGTTC
65 AGAAAAGCATTTCTTGCGACACCAAAG-CATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTT
* * *
978785 TAGGTTCCCAATCTTGAAAATAATGGAGACTGTT-CTGAGAATCGATGCTTGTCTTATTTAAGGG
129 TAGGTTCCCAACCTT-AAAAGAATGGAGACTGTTAC-GAGAATCGATGCTTGTCTTGTTTAAGGG
* * * * * *
978849 ATTAATTTTGATTATAAGGAAAA-ATGGCAAAGAAAAGATTTCCATGCAAAAGAAAATGATCAAT
192 -TGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAAT
* * * *
978913 ATCATTTATCTTAAAGAGGAGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
256 ATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
* * * * * * * * *
978978 CTAAAATCCATGTTAGTCTCATTTGAAGCACGAATTTAGACTTTATAAAAATTGGTAGGAAAAAA
321 GTAGAATCCATGTTTGTCTCA--TGAGGCACGAACTTAGACTTTACAAAAACTGGT-GGGAAGAA
* * ** * * * * **
979043 ATCCTTTCTTGTGAAACCATCGCACCAATATCATGTATCCTAATGAAAAAGACTATGTTTACAGT
383 AGCCTTTCTTGCGAAACCAAAGCATCAA-ATCATGTATCCTTAT-TAGAAGACTATGTTTATGGT
*
979108 GCCTAATCTTGAAAAGAATCGGGATT
446 GCCTAATCCTGAAAAGAAT-GGGATT
* * * * * *
979134 AGTATGAGTATTCATGCTTGTCTTATTTAAGAGACAAATTTTGATTCTATCAAAAACGATGGAAA
1 AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * * * * *
979199 AAAAAGC-TTTCTTGCAACACCAAAGCATCAATGTCTTATAACCTAATGAAGGGAATATGTTTTA
66 GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTTA
* * *
979263 GGCTCCCAATCCTAAAAATAATGGAGACTGCTACGAGAATCGATTACGAGAATCGATGCTTGTCT
131 GGTTCCCAA-CCT--TAA-AA--GA-A-TG----GAGACT-G-TTACGAGAATCGATGCTTGTCT
* * * * * * *
979328 TCTTTATGGGATGAACTTTGATTTTCATGAAAATAAGGCAAAGGAAAGATTTCCAAGTAAAAG-A
182 TGTTTAAGGG-TGAACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAA
* **
979392 AATCATCAATATCATTTATCCTAATGAGGAGGACGCATTTATAGTGCCTAATCACAAAATGAATG
246 AATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
979457 AAGATCATCAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGAGTTTACAAAAACTGG
311 AAGATCATTAGTAGAATCCATGTTTGTCTCA--TGAGGCACGAACTTAGACTTTACAAAAACTGG
* * * *
979522 TGGGAAGAAAGCCTTTAC-TGCAAAACCAAAGCATCTATATCGTGTACCCTT-TTGAGAAGACTA
374 TGGGAAGAAAGCCTTT-CTTGCGAAACCAAAGCATC-AAATCATGTATCCTTATT-AGAAGACTA
*
979585 TGATTATGGTGCCTAATCCTGAAAAGAATGGGGATT
436 TGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGATT
*
979621 AGTATGACTA-TCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCGAAAACGGTGGAAA
1 AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * ** *
979685 GAAAAGCATTTCTTGTGACACCAAAGCATCAAAGTCTTGTATCCT-ATCAAAGGGTCTGCGTTTT
66 GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAAT-GAAGGGAATGTGTTTT
* * * * * *
979749 TGGTTCCCAAACTTGAAAGACTGGAGACTGTTACGAGAATCGATACTTGTCTTGTTTAAAAGGTG
130 AGGTTCCCAACCTTAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTT-AAGGGTG
* * *
979814 AACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAAAAAATCATCAATATC
194 AACTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATATC
** *
979879 ATTTATCCTAATGAGGAGGATGCATTTATAGTACCTAATCACAAAATGAATGAAGATCATTAGTA
259 ATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTA
* *
979944 GAACCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCC
324 GAATCCATGTTTGTCTCA--TGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCC
* * * * *
980009 TTTATTCCGAAACCAAAGCATCATTATCATGTA-CCTTTTTTAGAAGACTATGATTATGGTGCCT
387 TTTCTTGCGAAACCAAAGCATCA-AATCATGTATCC-TTATTAGAAGACTATGTTTATGGTGCCT
*
980073 AATCCTGAAAAGAATGGGAAT
450 AATCCTGAAAAGAATGGGATT
* * * *
980094 AGTATGACTATTCATGTTTATCTTATTTATGAGGCAAACTTGGATTCTATCGAAAACAGTGGAAA
1 AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAA
* * * ** *
980159 GAAAAGCATTTCTTGTGACACCAAAGCATCAAAGTCATGCATCCTAATGAAGGGTATGCATTTTC
66 GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTTA
* * * * * *
980224 GGTTCCGAAACTTGAAAGACTAGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGA
131 GGTTCCCAACCTTAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTT-AAGGGTGA
*
980289 ACTTTGATTTTATGGAAAATAGGGC-AAGGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC
195 ACTTTGATTTTAAGGAAAATAGGGCAAAGG-AAAGATTTCCATGCAAAAGAAAATCATCAATATC
980353 ATTTATCCT
259 ATTTATCCT
980362 TGTTAGGATC
Statistics
Matches: 1870, Mismatches: 248, Indels: 121
0.84 0.11 0.05
Matches are distributed among these distances:
471 39 0.02
472 205 0.11
473 104 0.06
474 617 0.33
475 84 0.04
476 134 0.07
477 244 0.13
478 39 0.02
479 7 0.00
481 3 0.00
482 1 0.00
483 4 0.00
484 1 0.00
486 58 0.03
487 105 0.06
488 35 0.02
489 164 0.09
490 26 0.01
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.30
Consensus pattern (470 bp):
AGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAA
GAAAAGCATTTCTTGCGACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTTA
GGTTCCCAACCTTAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAGGGTGAA
CTTTGATTTTAAGGAAAATAGGGCAAAGGAAAGATTTCCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGA
ATCCATGTTTGTCTCATGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTC
TTGCGAAACCAAAGCATCAAATCATGTATCCTTATTAGAAGACTATGTTTATGGTGCCTAATCCT
GAAAAGAATGGGATT
Found at i:979312 original size:13 final size:13
Alignment explanation
Indices: 979294--979319 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
979284 TGGAGACTGC
979294 TACGAGAATCGAT
1 TACGAGAATCGAT
979307 TACGAGAATCGAT
1 TACGAGAATCGAT
979320 GCTTGTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
TACGAGAATCGAT
Found at i:979708 original size:158 final size:158
Alignment explanation
Indices: 979514--980189 Score: 354
Period size: 158 Copynumber: 4.3 Consensus size: 158
979504 AGAGTTTACA
* * * * *
979514 AAAACTGGTGGGAAG-AAAGCCTTTAC-TGCAAAACCAAAGCATCTATATCGTGTACCCTTTTGA
1 AAAAC-GGTGGAAAGAAAAGCATTT-CTTGCGAAACCAAAGCATC-ATATCATGTACCCTTATGA
979577 GAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TCATGTTTAT
63 GAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATGTTTAT
979641 CTTATTTAAGAGGCAAACTTTGATTCTATCG
128 CTTATTTAAGAGGCAAACTTTGATTCTATCG
* * * * * *
979672 AAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAAAGTCTTGTATCC-TATCA-A
1 AAAACGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCATA-TCATGTACCCTTATGAGA
* ** * * * * * * * * * * * * **
979735 AGGGTCTGCGTTTTTGGTTCCCAAACTTG-AAAGACTGGAGACT-GTTACGA-GAATCGATACTT
65 A--GACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTACTC-ATGTTT
* * * ** * *
979797 GTCTTGTTTAAAAGGTGAACTTTGATTTTATGG
126 ATCTTATTTAAGAGGCAAACTTTGATTCTATCG
* * * * ** * * * *
979830 AAAATAGG-GCAAAGAAAAG-ATTTCCATGCAAAAAAAAATCATCAATATCATTTATCCTAATGA
1 AAAA-CGGTGGAAAGAAAAGCATTT-CTTGCGAAACCAAAGCATC-ATATCATGTACCCTTATGA
** * * ** *
979893 G--GAGGATGCATTTATAGTACCTAATCAC--AAAATGAATGAAGATCATTAGTA-GA--ACCCA
63 GAAGACTATG-A-TTATGGTGCCTAATC-CTGAAAA-GAATG--G-GGATTAGTATGACTACTCA
* * * *
979951 TGTTTGTCTCATTT--GAGGCATGAACTTAGACTT-TA-CA
121 TGTTTATCTTATTTAAGAGGCA--AACTTTGA-TTCTATCG
* * * * * * *
979988 AAAACTGGTGGGAAG-AAAGCCTTTATTCCGAAACCAAAGCATCATTATCATGTACCTTTTTTAG
1 AAAAC-GGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCA-TATCATGTACCCTTATGAG
* *
980052 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAAT-GGGAATAGTATGACTATTCATGTTTATC
64 AAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATGTTTATC
* *
980116 TTATTTATGAGGCAAACTTGGATTCTATCG
129 TTATTTAAGAGGCAAACTTTGATTCTATCG
* * *
980146 AAAACAGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCA
1 AAAACGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCA
980190 AAGTCATGCA
Statistics
Matches: 365, Mismatches: 112, Indels: 82
0.65 0.20 0.15
Matches are distributed among these distances:
154 6 0.02
155 3 0.01
156 8 0.02
157 71 0.19
158 211 0.58
159 49 0.13
160 9 0.02
161 3 0.01
162 4 0.01
163 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Consensus pattern (158 bp):
AAAACGGTGGAAAGAAAAGCATTTCTTGCGAAACCAAAGCATCATATCATGTACCCTTATGAGAA
GACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTACTCATGTTTATCTT
ATTTAAGAGGCAAACTTTGATTCTATCG
Found at i:980677 original size:19 final size:19
Alignment explanation
Indices: 980630--980681 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
980620 AACCCTTGAA
*
980630 TGTATCGATACATTATGCTT
1 TGTATCGATACA-TATGCAT
* *
980650 TGCATCGATACATATTCAT
1 TGTATCGATACATATGCAT
980669 TGTATCGATACAT
1 TGTATCGATACAT
980682 GAAACTGGCA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 17 0.61
20 11 0.39
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.40
Consensus pattern (19 bp):
TGTATCGATACATATGCAT
Found at i:984389 original size:475 final size:475
Alignment explanation
Indices: 983200--992069 Score: 4602
Period size: 475 Copynumber: 18.3 Consensus size: 475
983190 TTATTTAAGG
* * * * * * * *
983200 GATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAAAA-ATGG-GAAAGAAGAGATTTT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATA-GGACAAAGAAAAGATTTC
* * * * * * *
983263 CATCCAAAAGAAAATGATCAATATCATTTATCATAGTGAGGAGAATGTGTTTATAGTGCCTAATC
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATC
* *
983328 ACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTT
130 ACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * * * ** *
983393 TACAAAAATTGGTGGGAAAAAAATCCTTTCTTGTGGAACCATAGCACCAATATCATGTTTCCTAA
195 TACAAAAACTGGTGGG-AAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTA
* * *
983458 TGAAAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTT
259 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
983523 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAAGC-TTTC-T-TG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAAGCATTTCTTGTG
* * * *
983585 ---CCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTATTAGGTTCCCAATCCCAAAA
388 ACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAA
* *
983647 ATAATGGAGACTGTAATGAGAATC
452 AGAATGGAGACTGTTATGAGAATC
* *
983671 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAT-GAAAACAAGGA-AAAGGAAAGATTT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTT-ATGGAAAA-TAGGACAAAGAAAAGATTT
* * *
983734 CCAAGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCATTT-TAGTGCCTAAT
64 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAAT
*
983798 CAC-AAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* **
983862 TTACAAAAACTGGTGGGAAGAAAGCCTTTAC-TGCGAAACCAAAGTGTCAATATCGTGTACCCTT
194 TTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCGTGTACCCTT
* *
983926 TTGAGAAGACTATGATTAATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTA-TCATG
258 ATGAGAAGACTATG-TTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATG
* * * * *
983990 TTTATCTTATTTAAAAGGCAAACTTCT-ATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTTG
322 TTTGTCTTATTTAAGAGACAAACTT-TGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTG
** * * * * * **
984054 TGATGCCAAAGCATCAAAGTCATGTATCCTAACGAAGGGTATGCATTTTCGGTTCCCGAA-CTTG
386 TGACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCC-AACCTAA
* * *
984118 AAAGACTGGAGACTGCTATGAGAATT
450 AAAGAATGGAGACTGTTATGAGAATC
* ** *
984144 GATGCTTGTCTTGTTTAAAAGG-TGAACTTTGATTTTATGGACAATAGGACAAAGAAAAGATTTC
1 GATGCTTGTCTTCTTT-ATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTC
*
984208 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACACGTTTATAGTGCCTAATC
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATC
* * * * *
984273 ACAAAATGAATAAAGATCATTAGTAGAGTCCATGTTTATCCCACTTGAGGCACGAACTTAGACTT
130 ACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * *
984338 TACAGAAACTGGTGGGAAGAAAGCCATTCTTGTGAAACCAAAGCATCAATATAGTGTATCCTTAT
195 TACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTAT
*
984403 GAG-AGACTTTGTTTATGGTGCCTAAT-CTCGAAAAGAATAGGGATTAGTATGACTATTCATGTT
260 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATAGGGATTAGTATGACTATTCATGTT
* * **
984466 TGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAAATGGTGGAAAAAAAAGCA-TTCTTGCA
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATC-AAAAACGGTGGAAAAAAAAGCATTTCTTGTG
** * * *
984530 ACACCAAAGCATCAATGTCATGTAACCTAGTGAAGGCAATGTGTTTTAGGTTCCCAATACTAAAA
388 ACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAA
* *
984595 ATAATGGAAACTGTTATGAGAATC
452 AGAATGGAGACTGTTATGAGAATC
* * *
984619 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGA-AAAGGAAAGTTTTC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAAT-AGGACAAAGAAAAGATTTC
* * * * * * *
984683 TATGCAAAAAAAAAATCAACAATATCATTTATCCCAATGAGGAGAATGTGTTTATAGTGCCTAAT
65 CATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAAT
*
984748 CACAAAATGAATGAAGAT-ATTAGTAGAATCCATATTTGTCTCATTTGAGGCACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * *
984812 TTACAAAAACTAGTGGGCAGAAAGCCTTTAC-AGCGAAACCAAAGTATCAATATCATATACCCTT
194 TTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCGTGTACCCTT
* * * * * *
984876 TTGAGAAGACAATGTTTATAGCGCCTCATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
* * * *
984941 TTATCTTATTTAAGAGGCAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTTGTG
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTG
* * * * * *
985006 ACACCAAAGCATCAATGTCATGTATA-CGAATGAAGGGTATGCGGTTTT-GGCTCCCAAGCTTGA
388 ACACCAAAGCATCAATGTCATGTA-ACCTAACGAAGGGAATGC-GTTTTAGGTTCCCAA-CCTAA
* **
985069 AAAGACA-AGAGACTGTTGCGAGAATC
450 AAAGA-ATGGAGACTGTTATGAGAATC
* * * *
985095 GATGCTTG-CTTCTTTAAGGGGTGAACATTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * *
985159 ATGCAAAAGAAAATCATTAATATCATTTGTCCTAATGAGGAGGACGTGTTTAGAGTGCCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* *
985224 CAAAATGAATGAAGATCATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCACGAACCTAGACTTT
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
985289 ACAAGAAA-TGGTAGGAAGAAAGCCATTCTTGTGAAACAAAAGCATCAATATCGTGTATCCTTAT
196 ACAA-AAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTAT
* * * *
985353 GCGAAGACTTTGTTTATGGTGCCTAAT-CTCAAAAAGAATAGGGATTAGTATGAGTATTCATGTT
260 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATAGGGATTAGTATGACTATTCATGTT
* **
985417 TGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAAGC-TTTCTTGCA
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAAGCATTTCTTGTG
* *
985481 ACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCCAAAA
388 ACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAA
*
985546 ATAATGGAGACTGTTATGAGAATC
452 AGAATGGAGACTGTTATGAGAATC
* * *
985570 GATGCTTGTTTTCTTTATGGGATGAACTTTGACTTTATGGAAAATAAGG-CAAAGGAAAGATTTC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAAT-AGGACAAAGAAAAGATTTC
* * *
985634 CATGCAAAAAAAAAATCATCAATATCATTTATCCTAATGAGAAGGACGCATTTATAGTGCCTAAT
65 CATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAAT
*
985699 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * *
985764 TTACAAAATCTGGTGGGAAGAAACCCTTTAC---TGAAACCAAAGCATAAATATCGTGTACCCTT
194 TTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCGTGTACCCTT
* * * * *
985826 TTAAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGACTA-TCATGC
258 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATG-
* * *
985890 TTT-TCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCAATTCTTGT
322 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGT
* * * * * **
985954 GACACCAAAGCATCAAAGTCATGTATCCTAACGAAGGGTATGCTTTTTTGGTTCCCAGA-CTTTA
387 GACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCA-ACCTAAA
*
986018 AAGACTGGAGACTGTTATGAGAATC
451 AAGAATGGAGACTGTTATGAGAATC
* * * * *
986043 GATGCTTGTCTTGTTTAAGCGG-TGAACATTGATTTTAAGAAAAATATGG-CAAAGAAAAGATTT
1 GATGCTTGTCTTCTTTATG-GGATGAACTTTGATTTTATGGAAAATA-GGACAAAGAAAAGATTT
* * * * *** * * * * *
986106 CCACGCAAAAGAAAATCATCAATATGAATGAAGATCATTAGTAGAGTC-CATGTT-T-GT-CTCA
64 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG-GACGCGT-TTATAGTGC-C-
** ** * * ** * * * * *** ***
986167 TTTGAGGCACGAACTTAGACTTTACA-AAAACTGGTGGGAACAAAACCAT-TCTTGTGAAACCAG
125 --T-AATCAC-AAAAT-GA-ATGA-AGATCA-T--T-AGTA-GAATCCATGT-TTGTCTCATTTG
** ** * * * ** * ** * *** **
986230 A-GCATCGAAATCATGTATCCTTATGTGAAGAATTTGT-TTATG-GTGCCTAATC-TCAAAAAGA
177 AGGCA-CG-AA-C-T-TAGACTT-T-ACAAAAACTGGTGGGAAGAAAGCCT-TTCTTGTGAAACC
* * * * *** * * * * **
986291 ATGGGGATTAGTATGAGTATTCATGCTTGTCTTATTTAAGAGACAAAC-ATTGATTCT-AT-CAA
234 A-----A--AGCATCAATA-TCGTG-TACCCTTA--T--GAGA-AGACTA-TGTTTATGGTGCCT
* * * * *** * * * * * * * * * * *
986353 AAACGGTGGAAAAAAAAAGCTTTCTTGCAACGCCAAAGCATCAATGTCATGTAACCTAATGAAGG
284 AATC-CT-GAAAAGAATAGGGAT-TAG-TATGAC-TA--TTC-ATGT-TTGT--CTTATTTAAGA
***** * * *** * *
986418 GAGTGTGTTTTAGGTTCTCAATCCTAAAATAATGGAAACTGTTATGAGAAA-CGA-TGCTTGTCA
338 GA-CAAACTTT-GATTCT--AT-CAAAAACGGTGGAAA-----A--A-AAAGC-ATTTCTTGTGA
*** ** * * * * * *** ** * * ** * * **
986481 TCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAG-G--AAAGATTTCCATGC-AAA
389 -CACCAAAGCATCAA-TGTCA-TGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAACCTAAA
* *
986542 AA-AA---A-A---TCATCA-ATATC
451 AAGAATGGAGACTGTTATGAGA-ATC
* * * * * *
986559 -AT--TTATC--C-TAATGAGGA-GAATGTGTTTATAGTGCCTAATCAGAAAATGAATGATGATC
1 GATGCTTGTCTTCTTTATG-GGATGAA-CT-TTGAT--T---TTAT-GGAAAAT--A-G--GA-C
*** * *** ** * * * **
986617 ATTACTAGAATCCATGTT-CATCTCATTTG-AGGT-ATGAACT-TAGATTTTTACAGAAATTGGT
51 A--A--AGAAAAGAT-TTCCAT-GCAAAAGAAAATCATCAA-TAT-CATTTAT-C-CTAA-T-G-
* * * * * * * * ** * * * * *
986678 GGGAAGAAAGCCTTTTCTTA-TGAAACCAAAGCATCAATAT-CGTGTATGCTTATCAGAAG-A-C
103 AGG-AGGACG-CGTTT-ATAGTG---CCTAATCA-CAAAATGAATG-AAGATCATTAGTAGAATC
* * * * * ** * ****
986739 CATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTGGTTTGACTATT-C-ATTTTTGTGTTA
160 CATG-TT-T-GT--CTCAT-TTG--AGGCA---CGA--ACTTAGACT-TTACAAAAACTG-G-T-
*** * *** **** * ** * * * *
986802 TTTAAGAGCCAAGCTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCGT-T--TCTTGTTGATGA
208 GGGAAGA---AAGC-CT--TTCT-TGTGAAACCAAAGCATCAATATCGTGTACCCTT-ATGA-GA
* * * * * * *** * * * * *
986864 AAACCAAG--GAAGGT-CC-ATTGAAGACAAAGACCTGAAGGCG-TTGGAAGGA-T-TTCAAG--
264 AGACTATGTTTATGGTGCCTAATCCTGA-AAAGA-AT--AGG-GATTAGTATGACTATTCATGTT
* * * * *** ** * * * * * * * *
986920 -GAC-CA-ATAACGAGGGCAAAGGCAAAGA--GGATAAAGGAAGAC-CTAG-AGAAGATG-GTTG
324 TGTCTTATTTAA-GA-GACAAA--CTTTGATTCTATCAA--AA-ACGGTGGAAAAAAAAGCATTT
* ** * * * * * * * **
986977 C-TG-GCCTATTTGAAAGTAGACCCAATTTGGAGTTAGAAGAGCCCAA-GCTAGTTAATTGCATA
382 CTTGTGAC-A--CCAAAG--CA-TCAATGT-CA--T-GTA-A-CCTAACG-AAGGGAA-TGC---
* ** ** * *
987039 TATTTGGAAGATATGGGTT-CCAA--TGGATTGAAT-TAGGACTTGGGTTATTTTGTAATAAAGG
430 -GTTT------TA--GGTTCCCAACCTAAAAAGAATGGA-GAC-T--GTTA---TG--A-GAA--
*
987100 GCC
474 -TC
* * * ** *** ** ** * *** *
987103 TGCTGGTTGTGACTTGC-TT-TGGGCTTTA-TTTAGCATAAGAACTTGTTATTTGGGTTTAAG-T
1 -GATGCTTGT--CTT-CTTTATGGGATGAACTTT-G-AT-TTTA--TGGAAAATAGGACAAAGAA
** * * ** * * * ** ** * *
987164 AAGAGTTGGGCTTGTTAGCATAATAAGC-CCCTTAGGGTTTGTGTTAT-CTATGACTTATGAGG-
57 AAGA-TT-TCCATG-CAAAAGAA-AATCATCAATA----TCAT-TTATCCTA--A-TGAGGAGGA
* * * ** * ** ** * ** * *
987226 -GCATATATA-AGCTCTTGTAAACAGATTTGGAGGGGGCAGA-CATTCA-TA-TTTGCA-GATTA
110 CGCGTTTATAGTGC-CTAAT-CACA-AAAT-GA--ATGAAGATCATT-AGTAGAATCCATG-TTT
** * * * * **** * * * * ** *
987285 AACACATTTTTGTGTG-A-G-A-GT-GA-TTCT-TAGGTTCTTGAGTG-AGCCAA-TTTTTCTGG
167 GTCTCA--TTTGAG-GCACGAACTTAGACTT-TACAAAAACTGGTGGGAAG-AAAGCCTTTCTTG
*** * * * * *** * *
987341 ATCTTATCAAGAGGC--CAAGACTCTTGTGGCGATCATTCCTTTTG-GCTTATCAATCTTGTGAT
227 -TGAAACCAA-A-GCATCAATA-TC--GT---G-T-A-CCCTTATGAGAAGA-CTATGTT-T-AT
* * * **** ** * * * * *
987403 TGTGGCGC-CATCCTTCATCTCTAAT--CTATTCCATTTTG-TTATT-TTTTTCTGCTTCTTTCA
277 GGT-GC-CTAATCC-TGA-AAAGAATAGGGATT--AGTATGACTATTCATGTT-TG--TC-TT--
** * * * * * * ** **
987463 ATTTCTGTTCTTGCATCAACAATTCTGTTTATTGTTAAAAATCCATCTCAAGATCATTATTTAGG
330 ATTTAAG----AG-A-CAA-ACTT-TGATT-CTATCAAAAA-CGGT-GGAA-A--A--A---A--
* * * * * * * **
987528 CAACCTTGGTTCATGGTTGTCATCACTTGTGACACCAAAACATCAATGCCATGTATCTTATTGAA
374 -AAGCAT--TTC----TTGT--G--------ACACCAAAGCATCAATGTCATGTAACCTAACGAA
* * * * * *
987593 GGGAATGTGTTCTAGGTTCCTAATCCTGAAAATAATGGAGACTGTTTTGAGAATC
422 GGGAATGCGTTTTAGGTTCCCAA-CCTAAAAAGAATGGAGACTGTTATGAGAATC
* * * * *
987648 GATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAAAA-ATGGA-AAAGAAAAGATTTC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATA-GGACAAAGAAAAGATTTC
** * * * * * *
987711 GTTGCAAAAGAAAATGATCAATATCATTTGTCCTAATGAGGAGAATGTGTTTATAGTGTCTAATC
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATC
* * * * *
987776 ACAAAATGAGTG-AGATCATTACTAAAATCCATGTTTATCTCATTTGAAGCACGAACTTAGACTT
130 ACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* * * * * * *
987840 TACAAAAA-TAGGTGGGAAAAAAATCCTTTCTTGTGAAACCATAGCACCAATATCATGTATCCTA
195 TACAAAAACT-GGTGGG-AAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTT
* * * *
987904 ATGAAAAGACTATGTTTACGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTAATCATGT
258 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGT
* *
987969 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAAGC-TTCCTTGC
323 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAAAAAAAGCATTTCTTGT
* * * * *
988033 AACACCAAAGCATCAATGTCATGTAAACTAA-AAAGGGAATGTGTTTTAGGCTCCCAATCCTAAA
387 GACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAA
* * *
988097 AATAATGGAGATTGTTGTGAGAATC
451 AAGAATGGAGACTGTTATGAGAATC
* *
988122 GATGCTTGTCTTCTTCATGGGATGAACTTTGATTTTAAT-GAAAATAAGG-CAAAGGAAAGATTT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTT-ATGGAAAAT-AGGACAAAGAAAAGATTT
* * * * * * * *
988185 CCAAGC-AAATAAAAGCATCAATATTATTTATCTTAACGAGGAGGACGCATTTATAGTGCCTAAA
64 CCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAAT
* *
988249 CATAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGAACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * *
988314 TTACAAAAACTGGTGGGAAGAAAGCCTTTAC-TATGAAACCAAAGTATCAATATCATGCAACCTT
194 TTACAAAAACTGGTGGGAAGAAAGCCTTT-CTTGTGAAACCAAAGCATCAATATCGTGTACCCTT
* *
988378 TTGAGAAGACTATGTTTATGGTGCCTAATCCTAAAAAGAAT-GAGGATTAGTATGACTATTCATG
258 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAG-GGATTAGTATGACTATTCATG
* * ** * *
988442 TTTATCTTATTTAAGAGGCAAACTTTGATTCTATTGAAAACGGTGGAAAGAAAAGCATTTCTTGC
322 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGT
* ** * * * * *
988507 AACACCAAAGCATCAATGTCATGTATA-CTAACGAAGGGTTTGTGTTTTTGGTTCCTAAACTTGA
387 GACACCAAAGCATCAATGTCATGTA-ACCTAACGAAGGGAATGCGTTTTAGGTTCC-CAACCTAA
** *
988571 AAAGGCTGGAGACTGTTACGAGAATC
450 AAAGAATGGAGACTGTTATGAGAATC
* * * * * * * * *
988597 AATTCTTGTCTTATTCAAGGGGTGAACATTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * *
988662 ACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATGGTGCCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* * * * *
988727 CAAAATGAAAGAAGATCATTACTAGAATCCATGTTTG-CATTATTTAAGGCACAAACTTAGACTT
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTT
* * ** *
988791 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCCTCAATATCGTGTATCATTTT
195 TACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTA-CCCTTA
** * * *
988856 TGAGAAGACTATGTTTATGGAACCTAATCCTGAAAAGAATGGGGATTAGTATGACCATTCATGGT
259 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
* * * * * * * * * *
988921 TGTTTTATTTAAGAGACAATCTTGGAATCAATCAAAAACGATGTAAAGAAAAGCTTTTCTTATG-
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGA
* * * * *
988985 -A-C--A-TATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTAGGTTCCCAATCCTAAAAA
389 CACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAAA
* * ** *
989045 TAATGTAGACTGTTGCGAGCATC
453 GAATGGAGACTGTTATGAGAATC
* * * * *
989068 GGTGCTTGTCTTGTTTAAGGTATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAAT-AGGACAAAGAAAAGATTTC
* * * *
989132 CATCCAAAAGAAAATCATCAATATCATTTATCCTAAT-ATGGAGAATGTGTTTATAGTGCCTAAT
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGGACGCGTTTATAGTGCCTAAT
** * * *
989196 CATGAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * * *
989261 ATACAAAAATTAGTCGGG-GGAAAGCCTTTCTTG-CAGAACCACAGCATCAATATCGTTTATCCT
194 TTACAAAAACTGGT-GGGAAGAAAGCCTTTCTTGTGA-AACCAAAGCATCAATATCGTGTACCCT
* * * * * *
989324 TTTAAGAAGACTATGTTTATAGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCCTG
257 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATG
* ** * **
989389 TTTGTCCTATTTTAA-AGGTAAACTTTGATTCTATCGAAAATAGTGGAAAAAAAAGCATTTCTTG
322 TTTGTCTTA-TTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTG
* * * * * * * *
989453 CGACACGAAAGCATCAATGTCATGTATA-CTAATGAAGGGTATGCGTTTTCGGTTCCTGAACTTT
386 TGACACCAAAGCATCAATGTCATGTA-ACCTAACGAAGGGAATGCGTTTTAGGTTCC-CAACCTA
* *
989517 AAAAGATTGGAGACTGTTACGAGAATC
449 AAAAGAATGGAGACTGTTATGAGAATC
* * * * * * * * *
989544 GATTCTTGTCTTATTTAAGGGGTGAACATTGATTATATTGAAAATAGGGCAAAGAAAAGATTTCT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * *
989609 ACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATGGTGCCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* * * *
989674 CAAAATGAAAGAAGATCATTACTAGAATCCATGTTTG-CGTCATTTAAGGCACCAACTTAGACTT
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTT
* *** * ** *
989738 TACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAAAGCTTCAATATCGTGTATCATTTT
195 TACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTA-CCCTTA
** * * *
989803 TGAGAAGACTATGTTTATGGCACCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGGT
259 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
* * * * * ** * * * * *
989868 TATTTTATTTAAGAGACAATCTTTGAATCAATCAAAAACAATGTAAAGAAAAGCTTTTCATATGA
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGA
* * * * *
989933 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAGTGTTTTAGGTTCCCGATCCTAAAAA
389 CACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCC-AACCTAAAAA
* * * ** *
989998 TAATGTAGACTATTGCGAGCATC
453 GAATGGAGACTGTTATGAGAATC
* * * *
990021 GATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAAGG-CAAAGAAAAGATTTC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAAT-AGGACAAAGAAAAGATTTC
* * * * *
990085 CATCCAAAAGAAAATCATCAATATCATTTATCCTAAT-ATGAAGAATGTGTTTATAGTGCCTAAT
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA-GGAGGACGCGTTTATAGTGCCTAAT
** * *
990149 CAGGAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAACTTAGACT
129 CACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACT
* * * * * * *
990214 TTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCATGTATCCTTT
194 TTACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTA
* * * * * * *
990279 TGAGAAAACTATGTTTATGGTGCCCAATCTTGAAAAGAATGGGGATTAGTTTGACTATTCTTTTT
259 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTT
* * * * *
990344 TGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACAGG-GGAAAGAAAAGCGTTTCTTGCG
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GGTGGAAAAAAAAGCATTTCTTGTG
* * * * * * *
990408 ACACCAAAACATCAATGTCATGTATCTTAATGAAGGGAATGTGTTCTAGGTTCCCAATCCTGAAA
388 ACACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAA
* *
990473 ATAATGGAGGCTGTTATGAGAATC
452 AGAATGGAGACTGTTATGAGAATC
* * * * * * * * *
990497 GATGCTTGTCTTATTTAAGGGATGGATTTTGATTATAAGGAGAA-AGGGCAAAGAAAAGATTTCT
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * * * * *
990561 ATGCAAAAGAAAATGATCAATATCATTTATCATAAAGAGAAGAATGTGTTTATAGTGCCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* * * *
990626 AAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAATGG-ACAAACTTAGACTT
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGA-GGCACGAACTTAGACTT
* * * * * *
990690 TAC--AAATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCAGCAATATCGTGCATCCTTTT
195 TACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTAT
* * * * * * * *
990753 GAGAAGACTATGTTTATAGTGTCTAATCCTGAAAAAAAATTGGCATTAGTCTAACTATTCATATT
260 GAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAATAGGGATTAGTATGACTATTCATGTT
* * * * **
990818 TGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGAATTTCTTGCAA
324 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGA
* * * * * ** * * * *
990883 CACTAAAGCATAAATGTCATGTATCCTAACAAAGGGTACACATTTTCGGTTCCCAAACTTGAAAA
389 CACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCC-AACCTAAAAA
** * * *
990948 GGCTGGAGACTATTACGGGAATC
453 GAATGGAGACTGTTATGAGAATC
* * * * * *
990971 GATGGTTGTCTTATTTAAGGGGTGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * ** * * * * *
991036 ATGTAAAAGAAAATCATCAATATCATTTATCCTAATAAAGAACATGTGTTTATTGTGCCAAATCC
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* *
991101 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTT
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * ** * **
991166 ACAAAAATTGGTGGGAAGAAACCCTTTGTTGCAAAAACAAAGCATCAATATCGTGTATTCTTATG
196 ACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTATG
* * * * * * *
991231 AGAAGACTATATATATGGTGCCTAAT-CTAAAAAAGAATAGCGATTAATATAAGTATTCATGTTT
261 AGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATAGGGATTAGTATGACTATTCATGTTT
* * * * * **
991295 GTCTTATTTAAGAGACGAACCTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCAAC
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGAC
* * * ** * * *
991360 ACCAAAGCAT-AATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCATAGTCTTGAAAAG
390 ACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCA-ACCTAAAAAG
* *
991424 AATGGAGATTGTTACGAGAAT-
454 AATGGAGACTGTTATGAGAATC
* ** * ** * * *
991445 GTTGCTTGTCTAATTTAAGATATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
* * * * * * * * *
991510 TTAC-AAA-AAAATCTTCGATATCAATTATCCTAATGAGGAGAATGTGTTTGTAGTGCCTAATCA
66 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
* * * *
991573 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTTTCA-TTGAAGGCATGAACTTAGACTA
131 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTT
* * * * * * *
991637 TACAAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAACCATCAATATCGTTTATCCTTTT
195 TACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTAT
* * * * * *
991702 GAGAAGACTTTGCTTATAGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCAAGCTT
260 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTT
* * * * *
991767 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAGAGAAAAGCTTTTTTTATGAC
325 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGAC
* * * ** * * *
991832 ACCAAAACATCAATGTCAAGTATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATCCTAAAAAT
390 ACCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAA-CCTAAAAAG
** *
991897 AATGGAGACTGTTACAAGCATC
454 AATGGAGACTGTTATGAGAATC
* * * * ** * *
991919 AATGCTTGTCTTATTTAAGGGATGAACATTGATTTT-TAGGAAAATAGGGTAAAGAAAAAATTCC
1 GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAT-GGAAAATAGGACAAAGAAAAGATTTC
* * * * * * * * *
991983 CACGTAAAAGAAAATCGTCGATATCATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCAAATC
65 CATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATC
* * *
992048 ACAAAATTAAAGAAAATCATTA
130 ACAAAATGAATGAAGATCATTA
992070 TTGTGGGAAG
Statistics
Matches: 6421, Mismatches: 1473, Indels: 1005
0.72 0.17 0.11
Matches are distributed among these distances:
468 9 0.00
469 94 0.01
470 224 0.03
471 335 0.05
472 378 0.06
473 410 0.06
474 959 0.15
475 1255 0.20
476 1131 0.18
477 728 0.11
478 10 0.00
479 2 0.00
481 1 0.00
482 6 0.00
483 14 0.00
484 2 0.00
485 4 0.00
486 1 0.00
487 9 0.00
488 4 0.00
489 12 0.00
491 1 0.00
492 3 0.00
494 1 0.00
495 1 0.00
496 7 0.00
497 4 0.00
498 5 0.00
500 3 0.00
501 4 0.00
502 9 0.00
503 29 0.00
504 10 0.00
505 11 0.00
506 9 0.00
507 5 0.00
508 2 0.00
509 5 0.00
510 19 0.00
511 5 0.00
512 8 0.00
513 20 0.00
514 14 0.00
515 14 0.00
516 12 0.00
517 14 0.00
518 26 0.00
519 13 0.00
520 9 0.00
521 4 0.00
522 16 0.00
523 8 0.00
524 16 0.00
525 37 0.01
526 35 0.01
527 26 0.00
528 39 0.01
529 37 0.01
530 20 0.00
531 29 0.00
532 26 0.00
533 6 0.00
534 11 0.00
535 25 0.00
536 24 0.00
537 14 0.00
538 18 0.00
539 19 0.00
540 10 0.00
541 5 0.00
542 14 0.00
543 7 0.00
544 26 0.00
545 10 0.00
546 2 0.00
547 5 0.00
548 8 0.00
549 4 0.00
550 2 0.00
551 7 0.00
552 3 0.00
553 7 0.00
554 6 0.00
555 2 0.00
556 1 0.00
557 9 0.00
558 1 0.00
559 1 0.00
560 1 0.00
561 2 0.00
562 2 0.00
565 2 0.00
566 6 0.00
567 3 0.00
568 2 0.00
569 1 0.00
571 1 0.00
572 4 0.00
573 1 0.00
575 3 0.00
577 1 0.00
578 1 0.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (475 bp):
GATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGGAAAATAGGACAAAGAAAAGATTTCC
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGACGCGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAACTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATCGTGTACCCTTATG
AGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGACTATTCATGTTTG
TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGTGACA
CCAAAGCATCAATGTCATGTAACCTAACGAAGGGAATGCGTTTTAGGTTCCCAACCTAAAAAGAA
TGGAGACTGTTATGAGAATC
Found at i:986504 original size:427 final size:424
Alignment explanation
Indices: 985696--986557 Score: 1137
Period size: 427 Copynumber: 2.0 Consensus size: 424
985686 TATAGTGCCT
* *
985696 AATCA-CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCTTTTGAGGCACGAACTTA
1 AATCATCAATATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* * * *
985760 GACTTTACAAAATCTGGTGGGAAGAAACCCTTTACTGAAACCAAAGCATAAATATCGTGTACCCT
66 GACTTTACAAAAACTGGTGGGAAAAAACCATTTACTGAAACCAAAGCATAAATATCATGTACCCT
* * * *
985825 TTTAAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTGTGACTATCATGC
131 TATAAGAAGAATATGATTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATCATGC
* * * * **
985890 TTTTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCAATTCTTGTG
196 TTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAGCAATTCTTGCA
* * * *
985955 ACACCAAAGCATCAAAGTCATGTATCCTAACGAAGGGTATGCTTTTTTGGTTCCCAGACTTTAAA
261 ACACCAAAGCATCAAAGTCATGTAACCTAACGAAGGGTATGCTTTTTAGGTTCCCAGACCTAAAA
* * * * *
986020 GACTGGAGACTGTTATGAGAATCGATGCTTGTCTTGTTTAAGCGGTGAACATTGATTTTAAGAAA
326 GAATGGAAACTGTTATGAGAAACGATGCTTGTCATCTTTAAGCGGTGAACATTGATTTTAAGAAA
* *
986085 AATATGGCAAAGAAAAGATTTCCACGCAAAAGAA
391 AATAAGGCAAAGAAAAGATTTCCACGCAAAAAAA
*
986119 AATCATCAATATGAATGAAGATCATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCACGAACTTA
1 AATCATCAATATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
** * * *
986184 GACTTTACAAAAACTGGTGGGAACAAAACCATTCTTGTGAAACCAGAGCATCGAA-ATCATGTAT
66 GACTTTACAAAAACTGGTGGGAA-AAAACCATT-TACTGAAACCAAAGCAT-AAATATCATGTAC
** * * *
986248 CCTTATGTGAAGAATTTGTTTATGGTGCCTAAT-CTCAAAAAGAATGGGGATTAGTATGAGTATT
128 CCTTATAAGAAGAATATGATTATGGTGCCTAATCCT-AAAAAGAATGGGGATTAGTATGACTA-T
*
986312 CATGCTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAAGC-TTT
191 CATGCTTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGG-AAAAAAAAGCAATT
* * * *
986376 CTTGCAACGCCAAAGCATCAATGTCATGTAACCTAATGAAGGG-AGTG-TGTTTTAGGTTCTCA-
255 CTTGCAACACCAAAGCATCAAAGTCATGTAACCTAACGAAGGGTA-TGCT-TTTTAGGTTCCCAG
* * *
986438 ATCCTAAAATAATGGAAACTGTTATGAGAAACGATGCTTGTCATCTTTATG-GGATGAACTTTGA
318 A-CCTAAAAGAATGGAAACTGTTATGAGAAACGATGCTTGTCATCTTTAAGCGG-TGAACATTGA
* * *
986502 TTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAAAA
381 TTTTAAGAAAAATAAGGCAAAGAAAAGATTTCCACGCAAAAAAA
986546 AATCATCAATAT
1 AATCATCAATAT
986558 CATTTATCCT
Statistics
Matches: 379, Mismatches: 49, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
423 5 0.01
424 78 0.21
425 9 0.02
426 76 0.20
427 202 0.53
428 9 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29
Consensus pattern (424 bp):
AATCATCAATATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
GACTTTACAAAAACTGGTGGGAAAAAACCATTTACTGAAACCAAAGCATAAATATCATGTACCCT
TATAAGAAGAATATGATTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTATGACTATCATGC
TTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAGCAATTCTTGCA
ACACCAAAGCATCAAAGTCATGTAACCTAACGAAGGGTATGCTTTTTAGGTTCCCAGACCTAAAA
GAATGGAAACTGTTATGAGAAACGATGCTTGTCATCTTTAAGCGGTGAACATTGATTTTAAGAAA
AATAAGGCAAAGAAAAGATTTCCACGCAAAAAAA
Found at i:989414 original size:947 final size:948
Alignment explanation
Indices: 987559--992069 Score: 5473
Period size: 947 Copynumber: 4.8 Consensus size: 948
987549 ATCACTTGTG
* * * * *
987559 ACACCAAAACATCAATGCCATGTAT-CTTATTGAAGGGAATGTGTTCTAGGTTCCTAATCCTGAA
1 ACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGTGTTTTAGGTTCCTAATCTTGAA
* ** * *
987623 AATAATGGAGACTGTTTTGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGG
65 AAGAATGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTATAAGG
* * * * *
987688 AAAA-ATGGAAAAGAAAAGATTTCGT-TGCAAAAGAAAATGATCAATATCATTTGTCCTAATGAG
130 AAAATAGGGCAAAGAAAAGATTTC-TACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * *
987751 GAGAATGTGTTTATAGTGTCTAATCACAAAATGAGTG-AGATCATTACTAAAATCCATGTTT--A
194 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCA
* * * *
987813 TCTCATTTGAA-GCACGAACTTAGACTTTACAAAAATAGGTGGGAAAAAAATCCTTTCTTGTGAA
259 T-T-ATTT-AAGGCACAAACTTAGACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTGTGAA
* * ** * *
987877 ACCATAGCAC-CAATATCATGTATCCTAATGAAAAGACTATGTTTACGGTGCCTAATCCTGAAAA
320 ACCAAAGC-CTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAA
* * * *
987941 GAATAGGGATTAGTATGAGTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
384 GAATGGGGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* * * ** **
988006 AACGGTGGAAAAAAAAAGC-TTCCTTGCAACACCAAAGCATCAATGTCATGTAAACTAA-AAAGG
449 AACGATGG-AAAGAAAAGCTTTTCTT--ATGACC-AAGCATCAATGTCATGTATCCTAATAAAGG
* * * *
988069 GAATGTGTTTTAGGCTCCCAATCCTAAAAATAATGGAGATTGTTGTGAGAATCGATGCTTGTCTT
510 GAATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTT
* * * * * ** *
988134 CTTCATGGGATGAACTTTGATTTTAATGAAAATAAGGCAAAGGAAAGATTTCCAAGC-AAATAAA
575 ATTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAA
* * * * * * ** *
988198 AGCATCAATATTATTTATCTTAACGAGGAGGACGCATTTATAGTGCCTAAACATAAAATGAATGA
640 ATCATCAATATCATTTATCCTAA-TAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGA
* * *
988263 AGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGAACGAACTTAGACTTTACAAAAACTGGT
704 AGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT
* * *
988328 GGGAAGAAAGCCTTTACTATG-A-AACCAAAGTATCAATATCATGCAACCTTTTGAGAAGACTAT
769 GGGAAGAAAGCCTTT-CT-TGCAGAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTAT
* *
988391 GTTTATGGTGCCTAATCCTA-AAAAGAATGAGGATTAGTATGACTATTCATGTTTATCTTATTTA
832 GTTTATGGTGCCTAATCC-AGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTA
** *
988455 AGAGGCAAACTTTGATTCTATTGAAAACGGTGGAAAGAAAAGCATTTCTTGCA
896 AGAGGCAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCATTTCTTGCA
* ** * *
988508 ACACCAAAGCATCAATGTCATGTATACTAACGAAGGGTTTGTGTTTTTGGTTCCTAAACTTGAAA
1 ACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTAATCTTGAAA
** * * * * * *
988573 AGGCTGGAGACTGTTACGAGAATCAATTCTTGTCTTATTCAAGGGGTGAACATTGATTTTATGGA
66 AGAATGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTATAAGGA
988638 AAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
131 AAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* * *
988703 GGATGTGTTTATGGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGCATT
196 GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCATT
988768 ATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
261 ATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
* **
988833 GCCTCAATATCGTGTATCATTTTTGAGAAGACTATGTTTATGGAACCTAATCCTGAAAAGAATGG
326 GCCTCAATATCGTGTATC-CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGG
* * * * * *
988898 GGATTAGTATGACCATTCATGGTTGTTTTATTTAAGAGACAATCTTGGAATCAATCAAAAACGAT
390 GGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGAT
* * * *
988963 GTAAAGAAAAGCTTTTCTTATGA-C-A-TATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTT
455 GGAAAGAAAAGCTTTTCTTATGACCAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTT
* * * *
989025 TAGGTTCCCAATCCTAAAAATAATGTAGACTGTTGCGAGCATCGGTGCTTGTCTTGTTTAAGGTA
520 TAGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTTATTTAAGGGA
989090 TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATCAATA
585 TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATCAATA
*
989155 TCATTTATCCTAATATGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCATTAC
650 TCATTTATCCTAATA-GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTAC
* * * * *
989220 TAGAATCCATGTTTGTCTCATTTAAGGCATGAACTTAGACTATACAAAAATTAGTCGGG-GGAAA
714 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAA
* * * * *
989284 GCCTTTCTTGCAGAACCACAGCATCAATATCGTTTATCCTTTTAAGAAGACTATGTTTATAGTGC
778 GCCTTTCTTGCAGAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGTTTATGGTGC
* * *
989349 CTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCCTGTTTGTCCTATTTTAA-AGGTAAACT
843 CTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGGCAAACT
* * * *
989413 TTGATTCTATCGAAAATAGTGGAAAAAAAAGCATTTCTTGCG
907 TTGATTCTATCAAAAACAGTGGAAAGAAAAGCATTTCTTGCA
* * * * *
989455 ACACGAAAGCATCAATGTCATGTATACTAATGAAGGGTATGCGTTTTCGGTTCCTGAA-CTTTAA
1 ACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCT-AATCTTGAA
* * * **
989519 AAGATTGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGGTGAACATTGATTATATTG
65 AAGAATGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTATAAGG
989584 AAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
130 AAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * *
989649 AGGATGTGTTTATGGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGTTTGCGT
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCAT
* * ***
989714 CATTTAAGGCACCAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACAAAACCAA
260 TATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
* * ** *
989779 AGCTTCAATATCGTGTATCATTTTTGAGAAGACTATGTTTATGGCACCTAATCTTGAAAAGAATG
325 AGCCTCAATATCGTGTATC-CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATG
* * * * * *
989844 GGGATTAGTATGACTATTCATGGTTATTTTATTTAAGAGACAATCTTTGAATCAATCAAAAACAA
389 GGGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGA
* * * *
989909 TGTAAAGAAAAGCTTTTCATATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAGT
454 TGGAAAGAAAAGCTTTTCTTATG--ACC-AAGCATCAATGTCATGTATCCTAATAAAGGGAATGT
* * *
989974 GTTTTAGGTTCCCGATCCTAAAAATAATGTAGACTATTGCGAGCATCGATGCTTGTCTTATTTAA
516 GTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTTATTTAA
*
990039 GGTATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATC
581 GGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATC
* **
990104 AATATCATTTATCCTAATATGAAGAATGTGTTTATAGTGCCTAATCAGGAAATGAATGAAGATCA
646 AATATCATTTATCCTAATA-GGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCA
* *
990169 TTACTAGAATCCATGTTTGTCTCATTTGTGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAG
710 TTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAG
* *
990234 AAAGCCTTTCTTGC-GAAACCAAAGCATCAGTATCATGTATCCTTTTGAGAAAACTATGTTTATG
775 AAAGCCTTTCTTGCAG-AACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGTTTATG
* ** * * * * *
990298 GTGCCCAATCTTGAAAAGAATGGGGATTAGTTTGACTATTCTTTTTTGTGTTATTTAAGAGCCAA
839 GTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAA
* * *
990363 ACTTTGATTCTATCAAAAACAGGGGAAAGAAAAGCGTTTCTTGCG
904 ACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCATTTCTTGCA
* * * *
990408 ACACCAAAACATCAATGTCATGTAT-CTTAATGAAGGGAATGTGTTCTAGGTTCCCAATCCTGAA
1 ACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGTGTTTTAGGTTCCTAATCTTGAA
* * * * * *
990472 AATAATGGAGGCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGGATTTTGATTATAAGG
65 AAGAATGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTATAAGG
* * * * * *
990537 AGAA-AGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATGATCAATATCATTTATCATAAAGAGA
130 AAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
*
990601 AGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-
195 AGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG-CA
* *
990665 TCATTTAATGG-ACAAACTTAGACTTTAC--AAATTGGTGGGAGGAAAGCCTTTCTTGTGAAACC
259 TTATTTAA-GGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACC
** * * * *
990727 AAAGCAGCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATAGTGTCTAATCCTGAAAAAAAA
323 AAAGCCTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTG-AAAAGAA
* * * * ** *
990792 TTGGCATTAGTCTAACTATTCATATTTGTCTTATTTTAGAGACAAACTTTGATTCTATCAAAAAC
387 TGGGGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
* ** ** * * * * *
990857 GTTGGAAAGAAAAGAATTTCTTGCAACACTAAAGCATAAATGTCATGTATCCTAACAAAGGGTAC
452 GATGGAAAGAAAAGCTTTTCTT--ATGAC-CAAGCATCAATGTCATGTATCCTAATAAAGGGAAT
*** * * * * *** * * * * *
990922 ACATTTTCGGTTCCCAAACTTGAAAAGGCTGGAGACTATTACGGGAATCGATGGTTGTCTTATTT
514 GTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTTATTT
* * * * **
990987 AAGGGGTGAACTTTAATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCA
579 AAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCA
* * * **
991052 TCAATATCATTTATCCTAATA-AAGAACATGTGTTTATTGTGCCAAATCCCAAAATGAATGAAGA
644 TCAATATCATTTATCCTAATAGGAG-A-ATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGA
*
991116 TCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
707 TCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGG
* * * * * * * * *
991181 AAGAAACCCTTTGTTGCAAAAACAAAGCATCAATATCGTGTATTCTTATGAGAAGACTATATATA
772 AAGAAAGCCTTTCTTGCAGAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGTTTA
* * * * * * * *
991246 TGGTGCCTAATCTAAAAAAGAATAGCGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGAC
837 TGGTGCCTAATCCAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGC
* * *
991311 GAACCTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTCTTGCA
902 AAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCATTTCTTGCA
* * *
991358 ACACCAAAGCAT-AATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTTGGTTCATAGTCTTGAA
1 ACACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGTGTTTTAGGTTCCTAATCTTGAA
* * ** * *
991421 AAGAATGGAGATTGTTACGAGAAT-G-TTGCTTGTCTAATTTAAGATATAAACTTTGATTTTAAG
65 AAGAATGGAGACTGTTACGAGAATCGATT-CTTGTCTTATTTAAGGGATGAACTTTGATTATAAG
* * *
991484 GAAAATAGGGCAAAGAAAAGATTTCCTTA--C-AAA-AAAATCTTCGATATCAATTATCCTAATG
129 GAAAATAGGGCAAAGAAAAGATTT-C-TACGCAAAAGAAAATCATCAATATCATTTATCCTAATG
*
991545 AGGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
192 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTG
* * ** * * *
991610 -TTTCATTGAAGGCATGAACTTAGACTATACAAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAA
257 CATT-ATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAA
* * * *
991674 CCAAA-CCATCAATATCGTTTATCCTTTTGAGAAGACTTTGCTTATAGTGCCTAATCCTGAAAAG
321 CCAAAGCC-TCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAG
* * *
991738 AATTGGGATTAGTATGACTATTCAAGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
385 AATGGGGATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * * * *
991803 ACGGTGGAGAGAAAAGCTTTTTTTATGACACCAAAACATCAATGTCAAGTATCCTAATAAAGGGA
450 ACGATGGAAAGAAAAGCTTTTCTTATG--ACC-AAGCATCAATGTCATGTATCCTAATAAAGGGA
* * * *
991868 ATGTGTTTTAGGTTCTCAATCCTAAAAATAATGGAGACTGTTACAAGCATCAATGCTTGTCTTAT
512 ATGTGTTTTAGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTTAT
* * * * * * *
991933 TTAAGGGATGAACATTGATTTTTAGGAAAATAGGGTAAAGAAAAAATTCCCA-CGTAAAAGAAAA
577 TTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATC-CAAAAGAAAA
* * * * * * *
991997 TCGTCGATATCATTTATGCTAATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATTAAAGAA
641 TCATCAATATCATTTATCCTAAT-AGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAA
*
992062 AATCATTA
705 GATCATTA
992070 TTGTGGGAAG
Statistics
Matches: 3093, Mismatches: 412, Indels: 115
0.85 0.11 0.03
Matches are distributed among these distances:
945 20 0.01
946 121 0.04
947 811 0.26
948 320 0.10
949 308 0.10
950 673 0.22
951 158 0.05
952 152 0.05
953 530 0.17
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (948 bp):
ACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTAATCTTGAAA
AGAATGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGATGAACTTTGATTATAAGGA
AAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGCATT
ATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
GCCTCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGG
GATTAGTATGACTATTCATGGTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATG
GAAAGAAAAGCTTTTCTTATGACCAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTT
AGGTTCCCAATCCTAAAAATAATGGAGACTGTTGCGAGCATCGATGCTTGTCTTATTTAAGGGAT
GAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATCCAAAAGAAAATCATCAATAT
CATTTATCCTAATAGGAGAATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTA
GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC
TTTCTTGCAGAACCAAAGCATCAATATCATGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTA
ATCCAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGGCAAACTTTGA
TTCTATCAAAAACAGTGGAAAGAAAAGCATTTCTTGCA
Found at i:989658 original size:476 final size:478
Alignment explanation
Indices: 987553--992069 Score: 5303
Period size: 476 Copynumber: 9.5 Consensus size: 478
987543 GTTGTCATCA
* * * * *
987553 CTTGTGACACCAAAACATCAATGCCATGTAT-CTTATTGAAGGGAATGTGTTCTAGGTTCCT-AA
1 CTTGCGACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGTGTTTTAGGTTCCTCAA
** *
987616 TCCTGAAAATAATGGAGACTGTTTTGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGAT
65 TCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * *** * *
987681 TATAAGGAAAA-ATGGAAAAGAAAAGATTTCGTTGCAAAAGAAAATGATCAATATCATTTGTCCT
130 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
987745 AATGAGGAGAATGTGTTTATAGTGTCTAATCACAAAATGAGTG-AGATCATTACTAAAATCCATG
195 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
987809 TTTATCTCATTTGAA-GCACGAACTTAGACTTTACAAAAATAGGTGGGAAAAAAATCCTTTCTTG
260 TTTGTCTCATTT-AAGGCACGAACTTAGACTTTACAAAAATTGGTGGG-AAGAAAGCCTTTCTTG
* * * * ** * *
987873 -TGAAACCATAGCACCAATATCATGTATCCTAATGAAAAGACTATGTTTACGGTGCCTAATCCTG
323 CAGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * *
987937 AAAAGAATAGGGATTAGTATGAGTAATCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
388 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
* * *
988002 CAAAAACGGTGGAAAAAAAAAGC-TTC
453 CAAAAACAGTGG-AAAGAAAAGCTTTT
* * * *
988028 CTTGCAACACCAAAGCATCAATGTCATGTAAACTAA-AAAGGGAATGTGTTTTAGGCTCC-CAAT
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* * ** * * *
988091 CCTAAAAATAATGGAGATTGTTGTGAGAATCGATGCTTGTCTTCTTCATGGGATGAACTTTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * * * * * *
988156 TTAATGAAAATAAGGCAAAGGAAAGATTTCCAAGC-AAATAAAAGCATCAATATTATTTATCTTA
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * ** * * *
988220 ACGAGGAGGACGCATTTATAGTGCCTAAACATAAAATGAATGAAGATCATTAGTAGAATCCATGT
196 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
988285 TTGTCTCATTTGAGGAACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCTTTAC-T--A
261 TTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTT-CTTGCA
* * * * *
988347 TGAAACCAAAGTATCAATATCATGCAACCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTAA
325 -GAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * *
988412 AAAGAATGAGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATT
389 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* * *
988477 GAAAACGGTGGAAAGAAAAGCATTT
454 AAAAACAGTGGAAAGAAAAGCTTTT
* * ** * *
988502 CTTGCAACACCAAAGCATCAATGTCATGTATACTAACGAAGGGTTTGTGTTTTTGGTTCCT-AAA
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* *** * * * * *
988566 CTTGAAAAGGCTGGAGACTGTTACGAGAATCAATTCTTGTCTTATTCAAGGGGTGAACATTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* *
988631 TTATGGAAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTA
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
988696 ATGAGGAGGATGTGTTTATGGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGT
196 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* * *
988761 TTG-CATTATTTAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG-T
261 TTGTC-TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
* * **
988824 GAAACCAAAGCCTCAATATCGTGTATCATTTTTGAGAAGACTATGTTTATGGAACCTAATCCTGA
325 GAAACCAAAGCATCAATATCGTGTATC-CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * * *
988889 AAAGAATGGGGATTAGTATGACCATTCATGGTTGTTTTATTTAAGAGACAATCTTGGAATCAATC
389 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
*
988954 AAAAAC-GATGTAAAGAAAAGCTTTT
454 AAAAACAG-TGGAAAGAAAAGCTTTT
** * * *
988979 CTTATG--A-C--A-TATCAATGTCATGTATCCTAATGAAGGGAAGGTGTTTTAGGTTCC-CAAT
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* * * * * * *
989037 CCTAAAAATAATGTAGACTGTTGCGAGCATCGGTGCTTGTCTTGTTTAAGGTATGAACTTTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
*
989102 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATC-CAAAAGAAAATCATCAATATCATTTATCCT
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-CGCAAAAGAAAATCATCAATATCATTTATCCT
**
989166 AAT-ATGGAGAATGTGTTTATAGTGCCTAATCATGAAATGAATGAAGATCATTACTAGAATCCAT
195 AATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * *
989230 GTTTGTCTCATTTAAGGCATGAACTTAGACTATACAAAAATTAGTCGGG-GGAAAGCCTTTCTTG
259 GTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGT-GGGAAGAAAGCCTTTCTTG
* * * * *
989294 CAG-AACCACAGCATCAATATCGTTTATCCTTTTAAGAAGACTATGTTTATAGTGCCTAATCCAG
323 CAGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTG
* * **
989358 AAAAGAATGGGGATTAGTATGACTATTCCTGTTTGTCCTATTTTAA-AGGTAAACTTTGATTCTA
388 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTA-TTTAAGAGACAAACTTTGATTCTA
* * * *
989422 TCGAAAATAGTGGAAAAAAAAGCATTT
452 TCAAAAACAGTGGAAAGAAAAGCTTTT
* * * * *
989449 CTTGCGACACGAAAGCATCAATGTCATGTATACTAATGAAGGGTATGCGTTTTCGGTTCCTGAA-
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* * * * * * *
989513 CTTTAAAAGATTGGAGACTGTTACGAGAATCGATTCTTGTCTTATTTAAGGGGTGAACATTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* ** *
989578 ATATTGAAAATAGGGCAAAGAAAAGATTTCTACGCAAAAGAAAATCATCAATATCATTTATCCTA
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
* * *
989643 ATGAGGAGGATGTGTTTATGGTGCCTAATCACAAAATGAAAGAAGATCATTACTAGAATCCATGT
196 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
* *
989708 TTG-CGTCATTTAAGGCACCAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTACA
261 TTGTC-TCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
* * ** *
989772 -AAACCAAAGCTTCAATATCGTGTATCATTTTTGAGAAGACTATGTTTATGGCACCTAATCTTGA
325 GAAACCAAAGCATCAATATCGTGTATC-CTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * * *
989836 AAAGAATGGGGATTAGTATGACTATTCATGGTTATTTTATTTAAGAGACAATCTTTGAATCAATC
389 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
989901 AAAAACAATGTAAAGAAAAGCTTTT
454 AAAAACAGTGGAAAGAAAAGCTTTT
* ** * * *
989926 CATATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAAGTGTTTTAGGTTCC-CGAT
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* * * * * *
989990 CCTAAAAATAATGTAGACTATTGCGAGCATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
*
990055 TTAAGGAAAATAAGGCAAAGAAAAGATTTCCATC-CAAAAGAAAATCATCAATATCATTTATCCT
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCA-CGCAAAAGAAAATCATCAATATCATTTATCCT
* **
990119 AAT-ATGAAGAATGTGTTTATAGTGCCTAATCAGGAAATGAATGAAGATCATTACTAGAATCCAT
195 AATGA-GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
** *
990183 GTTTGTCTCATTTGTGGCACGAACTTAGACTTTATAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
259 GTTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
990248 -GAAACCAAAGCATCAGTATCATGTATCCTTTTGAGAAAACTATGTTTATGGTGCCCAATCTTGA
324 AGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGA
* * * * *
990312 AAAGAATGGGGATTAGTTTGACTATTCTTTTTTGTGTTATTTAAGAGCCAAACTTTGATTCTATC
389 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
* *
990377 AAAAACAGGGGAAAGAAAAGCGTTT
454 AAAAACAGTGGAAAGAAAAGCTTTT
* *
990402 CTTGCGACACCAAAACATCAATGTCATGTAT-CTTAATGAAGGGAATGTGTTCTAGGTTCC-CAA
1 CTTGCGACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGTGTTTTAGGTTCCTCAA
* * * *
990465 TCCTGAAAATAATGGAGGCTGTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGGATTTTGAT
65 TCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
* * * * * *
990530 TATAAGGAGAA-AGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATGATCAATATCATTTATCAT
130 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCT
* * *
990594 AAAGAGAAGAATGTGTTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATG
195 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* *
990659 TTTGTCTCATTTAATGG-ACAAACTTAGACTTTAC--AAATTGGTGGGAGGAAAGCCTTTCTTG-
260 TTTGTCTCATTTAA-GGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGC
* * * * *
990720 TGAAACCAAAGCAGCAATATCGTGCATCCTTTTGAGAAGACTATGTTTATAGTGTCTAATCCTGA
324 AGAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTG-
* * * * * * *
990785 AAAAAAATTGGCATTAGTCTAACTATTCATATTTGTCTTATTTTAGAGACAAACTTTGATTCTAT
388 AAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
**
990850 CAAAAAC-GTTGGAAAGAAAAGAATTT
453 CAAAAACAG-TGGAAAGAAAAGCTTTT
* * * * ** * **** * *
990876 CTTGCAACACTAAAGCATAAATGTCATGTATCCTAACAAAGGGTACACATTTTCGGTTCC-CAAA
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* *** * * * * *
990940 CTTGAAAAGGCTGGAGACTATTACGGGAATCGATGGTTGTCTTATTTAAGGGGTGAACTTTAATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * *
991005 TTATGGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAAGAAAATCATCAATATCATTTATCCTA
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * * *
991070 ATAAAGA-ACATGTGTTTATTGTGCCAAATCCCAAAATGAATGAAGATCATTACTAGAATCCATG
196 ATGAGGAGA-ATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * *
991134 TTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCCTTTGTTGCA
260 TTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
* * * * * *
991199 -AAAACAAAGCATCAATATCGTGTATTCTTATGAGAAGACTATATATATGGTGCCTAAT-CTAAA
325 GAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCT-GA
* * * * * * *
991262 AAAGAATAGCGATTAATATAAGTATTCATGTTTGTCTTATTTAAGAGACGAACCTTGATTCTATC
389 AAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATC
991327 AAAAACAGTGGAAAGAAAAGCTTTT
454 AAAAACAGTGGAAAGAAAAGCTTTT
* * * *
991352 CTTGCAACACCAAAGCAT-AATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTTGGTTCAT-AG
1 CTTGCGACACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGTGTTTTAGGTTCCTCAA
* * * * * ** *
991414 TCTTGAAAAGAATGGAGATTGTTACGAGAAT-GTTGCTTGTCTAATTTAAGATATAAACTTTGAT
65 TCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGAT
*** * * *
991478 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCTTAC-AAA-AAAATCTTCGATATCAATTATCCT
130 TTTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCT
*
991541 AATGAGGAGAATGTGTTTGTAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
195 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
* * * * *
991606 TTTGTTTCATTGAAGGCATGAACTTAGACTATACAAAAATTGGTGGGAGGAAAGCCTTTCTTGC-
260 TTTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCA
* * * * *
991670 GAAACCAAACCATCAATATCGTTTATCCTTTTGAGAAGACTTTGCTTATAGTGCCTAATCCTGAA
325 GAAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAA
* * *
991735 AAGAATTGGGATTAGTATGACTATTCAAGCTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
390 AAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
* *
991800 AAAACGGTGGAGAGAAAAGCTTTT
455 AAAACAGTGGAAAGAAAAGCTTTT
* ** * * * *
991824 TTTATGACACCAAAACATCAATGTCAAGTATCCTAATAAAGGGAATGTGTTTTAGGTT-CTCAAT
1 CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
* * * * *
991888 CCTAAAAATAATGGAGACTGTTACAAGCATCAATGCTTGTCTTATTTAAGGGATGAACATTGATT
66 CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
* * * * * * * *
991953 TTTAGGAAAATAGGGTAAAGAAAAAATTCCCACGTAAAAGAAAATCGTCGATATCATTTATGCTA
131 TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
* * * *
992018 ATGAGGAGAATGTGTTTATAGTGCCAAATCACAAAATTAAAGAAAATCATTA
196 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
992070 TTGTGGGAAG
Statistics
Matches: 3405, Mismatches: 567, Indels: 139
0.83 0.14 0.03
Matches are distributed among these distances:
470 102 0.03
471 285 0.08
472 283 0.08
473 156 0.05
474 614 0.18
475 542 0.16
476 838 0.25
477 583 0.17
478 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (478 bp):
CTTGCGACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGTGTTTTAGGTTCCTCAAT
CCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATT
TTAAGGAAAATAGGGCAAAGAAAAGATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTA
ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGT
TTGTCTCATTTAAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAG
AAACCAAAGCATCAATATCGTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAA
AGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAA
AAACAGTGGAAAGAAAAGCTTTT
Found at i:992452 original size:424 final size:424
Alignment explanation
Indices: 991648--992493 Score: 1180
Period size: 424 Copynumber: 2.0 Consensus size: 424
991638 ACAAAAATTG
* * * ** *
991648 GTGGGAGGAAAGCCTTTCTTGCGAAACCAAACCATCAATATCGTTTATCCTTTTGAGAAGACTTT
1 GTGGGAAGAAACCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTGATGAGAAGACTAT
* *
991713 GCTTATAGTGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCAAGCTTGTCTTATTTAA
66 GCTTATAGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACTATTCAAGCTTGTCTTATTTAA
* * *
991778 GAGACAAACTTTGATTCTATCAAAAACGGTGGAGAGAAAAGCTTTTTTTATGACACCAAAACATC
131 GAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTTCTATGACACCAAAACATC
* * *
991843 AATGTCAAGTATCCTAATAAAGGGAATGTGTTTTAGGTTCTCAATCCTAAAAATAATGGAGACTG
196 AATGTCAAGTAACCGAATAAAGGGAATGTGTTTTAGGTTCTCAATCATAAAAATAATGGAGACTG
* *
991908 TTACAAGCATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTTAGGAAAATAGGGTAAAG
261 TTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTTAGGAAAATAGGGCAAAG
* * * *
991973 AAAAAATTCCCACGTAAAAGAAAATCGTCGATATCATTTATGCTAATGAGGAGAATGTGTTTATA
326 AAAAAATTCCCACGCAAAAGAAAATCGTCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATA
*
992038 GTGCCAAATCACAAAATTAAAGAAAATCATTATT
391 GTGCCAAATCACAAAATGAAAGAAAATCATTATT
* *
992072 GTGGGAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTGATGAGAAGACTAT
1 GTGGGAAGAAACCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTGATGAGAAGACTAT
* * * ** *
992137 GTTTATGGTGCCTAATCC-AAAAATGAATAGGGATTAGTATGAGTATTCTTGTTTGTCTTATTTA
66 GCTTATAGTGCCTAATCCTAAAAA-GAATAGGGATTAGTATGACTATTCAAGCTTGTCTTATTTA
*
992201 AGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGC-TTTTCTA-GCAACACCAAAGC
130 AGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTTCTATG--ACACCAAAAC
* * *
992264 ATCAATGTCATGTAACCGAATGAAGGGAATGTGTTTTAGGTTC-CTAATCATGAAAATAATGGAG
193 ATCAATGTCAAGTAACCGAATAAAGGGAATGTGTTTTAGGTTCTC-AATCATAAAAATAATGGAG
*** * * *
992328 ACTGTTTTGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGA-TTTTATGGAAAATAGGG
257 ACTGTTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTTA-GGAAAATAGGG
* ** ** *
992392 CAAAGAAAAGATTTTCTTGCAAAAGAAAATCGTCAATATCATTTATCCTAAGGTGGAGAATGTGT
321 CAAAGAAAAAATTCCCACGCAAAAGAAAATCGTCAATATCATTTATCCTAAGGAGGAGAATGTGT
* * *
992457 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
386 TTATAGTGCCAAATCACAAAATGAAAGAAAATCATTA
992494 CTAGAATCCT
Statistics
Matches: 369, Mismatches: 48, Indels: 10
0.86 0.11 0.02
Matches are distributed among these distances:
422 1 0.00
423 16 0.04
424 352 0.95
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (424 bp):
GTGGGAAGAAACCCTTTCTTGCGAAACCAAACCATCAATATCGTGTATCCTGATGAGAAGACTAT
GCTTATAGTGCCTAATCCTAAAAAGAATAGGGATTAGTATGACTATTCAAGCTTGTCTTATTTAA
GAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTTTTCTATGACACCAAAACATC
AATGTCAAGTAACCGAATAAAGGGAATGTGTTTTAGGTTCTCAATCATAAAAATAATGGAGACTG
TTACAAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTTAGGAAAATAGGGCAAAG
AAAAAATTCCCACGCAAAAGAAAATCGTCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATA
GTGCCAAATCACAAAATGAAAGAAAATCATTATT
Found at i:993662 original size:36 final size:37
Alignment explanation
Indices: 993621--993693 Score: 139
Period size: 36 Copynumber: 2.0 Consensus size: 37
993611 AAAATAGGGC
993621 AAAGAAAAGATTTTCACGT-AAAAAAATCATCAATAT
1 AAAGAAAAGATTTTCACGTAAAAAAAATCATCAATAT
993657 AAAGAAAAGATTTTCACGTAAAAAAAATCATCAATAT
1 AAAGAAAAGATTTTCACGTAAAAAAAATCATCAATAT
993694 CATTTATCCT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
36 19 0.53
37 17 0.47
ACGTcount: A:0.56, C:0.11, G:0.08, T:0.25
Consensus pattern (37 bp):
AAAGAAAAGATTTTCACGTAAAAAAAATCATCAATAT
Found at i:995490 original size:476 final size:472
Alignment explanation
Indices: 994585--996235 Score: 2107
Period size: 476 Copynumber: 3.5 Consensus size: 472
994575 TTAGTATGAC
* * *
994585 TAGAGATTGTTACGAGAATCAAAGCTTGTTTTATTTAAGGGGTGAACTTTG-TTTTATGGAAAAT
1 TAGAGATTGTTACGAGAATC-AAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * * *
994649 AGGGCAAAGAAAAGATTTCCATGCAAAGGAAAATCATCAATATCATTTATCCTAATGAGGGGGAT
65 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
994714 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAAAATCCATGTTTGTCTCATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* *
994779 AAGGCACAAGCTTAGA-TGTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAGACCAAAGCA
195 AAGGCACAAACTTAGACT-TTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGGAAG-CCAAAGCA
* * * * *
994843 TCAATATCATGTATCCTTTTGAGAAGATATATGTTTATGGCACCTAATGCTGAAAAGAATGGGGA
258 TCAATATCA-GTATCCTTATGAGAAGA-CTATGTTTATGGCGCCTAATCCT-AAAAGAATGGTGA
* * * * * * *
994908 TTAGTATGACTATTTATGTTTGTCTTATTTAAGAGACATACTTTGAATCAACCAAAAATGGTGTA
320 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
* *
994973 AAGAAGAGCTTTTCTTATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
385 AAGAAAAGCTTTTCTTAAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * *
995038 TAGGTTCCTGATCCTGAAAATAA
450 TTGGTTCCAGATCTTGAAAATAA
* *
995061 TAGAGATTGTTACGAGAATCAACGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAAT
1 TAGAGATTGTTACGAGAATCAA-GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* * *
995126 AAGGCAAAGGAAAGATTTCCATG-AAAAAAAAATCATCAATATTATTTATCCTAATGAGGAGAAT
65 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* * *
995190 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATATTCGTCTAATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
* * * *
995255 GAGGCATAAACTTAGACTTTACAAAAATTAGTGGGAA-AAATGCCTTTCTTGAGAAGCCAAAACA
195 AAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTTG-GAAGCCAAAGCA
* * * * *
995319 TTAATAT-AGCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAGTCCTAAAGAGAGTGGTGA
258 TCAATATCAG--TATCCTTATGAGAAGACTATGTTTATGGCGCCTAATCCTAAA-AGAATGGTGA
* ** *
995383 TTGGTATGACTATTCACATGTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
320 TTAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA
*
995448 AAGAAAAGCTTTTCTTAAGACACCAAAGCAAT-AATGGTCATGTTTCCTAATGAAGGGAATGTGT
385 AAGAAAAGCTTTTCTTAAGACACCAAAGC-ATCAAT-GTCATGTATCCTAATGAAGGGAATGTGT
*
995512 TTTTGGTTCCCA-ATTTTGAAAATAA
448 TTTTGGTT-CCAGATCTTGAAAATAA
* * * * * * *
995537 TGGAGATAGTTACGAGCATCGATGCTTGTCTTATTTAAGGTATGAACATTGATTTTAAGGAAGAT
1 TAGAGATTGTTACGAGAATC-AAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* *
995602 -AGGTCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGAAGAA
65 AAGG-CAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
* * * **
995666 TGTGTTTACAGTGCCAAATCTCAAAATTCATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
129 TGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
* * * * * * *
995731 TGAGGCACGAACCTAGACTTTAAAAAAATTGGTGAGAAGAAACCCTTTCTTGCGAAACCAAAGCA
194 TAAGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTG-GAAGCCAAAGCA
* * * *
995796 TCAATATCATGTATCCTTATGAGAAGACTATATTTATGGGGCCTAATCCAAAAAAGAATAGTGAT
258 TCAATATCA-GTATCCTTATGAGAAGACTATGTTTATGGCGCCTAATCC-TAAAAGAATGGTGAT
* * ** *
995861 TAGTATGAGTATTCATGTTTGTCTTATTTAAAAGATGAACTTTGATTCTATCAAAAACAGTGGAA
321 TAGTATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAA
* * *
995926 GGAAAAGCTTTTCTTGCA-ACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTT
386 AGAAAAGCTTTTCTT-AAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
*
995990 TTGGTTCACAG-TCTTGAAAAGAA
450 TTGGTTC-CAGATCTTGAAAATAA
* * * * * ** * *
996013 TGGAGACTGTTATGGGAATCGAAGCTTGTCTAATTTAAAAGATAAACTTTGATTTTAAGGAAGAT
1 TAGAGATTGTTACGAGAATC-AAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAAT
* *
996078 AAGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATATCAATTATCCTAATGAGGAGAAT
65 AAGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT
* *
996143 CTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGGAATCCATGTTTGTCTCATTT
130 GTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTT
** * *
996208 AAGTTACGAACTTAGACTATACAAAAAT
195 AAGGCACAAACTTAGACTTTACAAAAAT
996236 GTGTGAGAGT
Statistics
Matches: 1017, Mismatches: 135, Indels: 46
0.85 0.11 0.04
Matches are distributed among these distances:
474 4 0.00
475 120 0.12
476 564 0.55
477 320 0.31
478 8 0.01
479 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.19, T:0.31
Consensus pattern (472 bp):
TAGAGATTGTTACGAGAATCAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATA
AGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG
TGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTA
AGGCACAAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGGAAGCCAAAGCATCA
ATATCAGTATCCTTATGAGAAGACTATGTTTATGGCGCCTAATCCTAAAAGAATGGTGATTAGTA
TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAA
AGCTTTTCTTAAGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTT
CCAGATCTTGAAAATAA
Found at i:996220 original size:159 final size:158
Alignment explanation
Indices: 994628--996220 Score: 430
Period size: 159 Copynumber: 10.0 Consensus size: 158
994618 TTTAAGGGGT
* * * * * ** *
994628 GAACTTTG-TTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAGGAAAATCATCAATAT
1 GAACTTTGATTTTAAGGAAGATAGGTCAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATAT
* ** * *
994692 CATTTATCCTAATGAGGGGGATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGT
66 CATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTA-T
** **
994757 AAAATCCATGTTTGTCTCATTTAAGGCAC
130 GGAATCCATGTTTGTCTCATTTAAGATAC
* * * * ** ** * *
994786 -AAGCTTAGATGTTACA--AAAATTGGTGGGAAG-AAAGCCTTTCTTGCAAGACCAAAGCATCAA
1 GAA-CTTTGATTTTA-AGGAAGATAGGT-CAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAA
** * * ** * ** *
994847 TATCATGTATCCTTTTGAGAAGATATATGTTTATGGCACCTAATGCTGAAAA-GAATGGGGATTA
63 TATCATGTATCCTAATGAGAAGA-ATGTGTTTATAGTGCCTAAT-CTCAAAATGAATGAAGATCA
* ** * *
994911 GTAT-GACTATTTATGTTTGTCTTATTTAAGAGAC
126 TTATGGA--ATCCATGTTTGTCTCATTTAAGATAC
* * ** * * * * *** * *
994945 -ATACTTTGA-ATCAACCAA-AAATGGTGTAAAGAAGAGCTTTTCTTATGACACCAAAGCATCAA
1 GA-ACTTTGATTTTAAGGAAGATA-GGT-CAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAA
* * * * *
995007 TGTCATGTATCCTAATGA-AGGGAATGTGTTT-TAGGTTCCTGATCCTGAAAAT-AAT-AGAGAT
63 TATCATGTATCCTAATGAGA-AGAATGTGTTTATA-GTGCCTAAT-CTCAAAATGAATGA-AGAT
** * * * * * ** *
995068 TGTTACGAGAATCAACGCTTGTCTTC-TTTATGGGAT
124 CATTATG-GAATCCATGTTTGTC-TCATTTAAGATAC
* * * * * *
995104 GAACTTTGATTTTAAGGAAAATAAGG-CAAAGGAAAGATTTCCATG-AAAAAAAAATCATCAATA
1 GAACTTTGATTTTAAGGAAGAT-AGGTCAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATA
* * * *
995167 TTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAC
65 TCATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTA-
* * * * *
995232 TAGAATCCATATTCGTCTAATTTGAGGCATA-
129 TGGAATCCATGTTTGTCTCATTT-AAG-ATAC
* * * ** * ** * *
995263 -AACTTAGACTTTACA--AAAATTA-GTGGGAA-AAATGCCTTTCTTG-AGAAGCCAAAA-CATT
1 GAACTTTGATTTTA-AGGAAGA-TAGGT-CAAAGAAAAGATTTTCTTGCA-AA-ACAAAAGCATC
* * * * * **
995321 AATAT-A-GCATATCCTAATGAGAAGACTATGTTTATGGTGCCTAGTC-CTAAAGA-GAGTGGTG
61 AATATCATG--TATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTC-AAA-ATGAATGAAG
*** * *
995382 ATTGGTAT-GACTATTCACATG--TGTCTTATTTAAGAGAC
122 ATCATTATGGA--A-TC-CATGTTTGTCTCATTTAAGATAC
* * ** * * * *
995420 AAACTTTGATTCT-ATCAA-AAACGGTGGAAAGAAAAGCTTTTCTT--AAGACACCAAAGCAAT-
1 GAACTTTGATTTTAAGGAAGATA-GGT-CAAAGAAAAGATTTTCTTGCAA-A-ACAAAAGC-ATC
* * * * * * * * * *
995480 AATGGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATTTTGAAAAT-AATGGAGA
61 AAT-ATCATGTATCCTAATGAGA-AGAATGTGTTTATAGTGCCTAA-TCTCAAAATGAATGAAGA
* * * * * * *
995543 T-AGTTACGAGCATCGATGCTTGTCTTATTTAAGGTAT
123 TCA-TTATG-GAATCCATGTTTGTCTCATTTAAGATAC
* * * *
995580 GAACATTGATTTTAAGGAAGATAGGTCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
1 GAACTTTGATTTTAAGGAAGATAGGTCAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATAT
* * * **
995645 CATTTATCCTAATGAGAAGAATGTGTTTACAGTGCCAAATCTCAAAATTCATGAAGATCATTACT
66 CATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTA-T
* * **
995710 AGAATCCATGTTTGTCTCATTTGAGGCAC
130 GGAATCCATGTTTGTCTCATTTAAGATAC
* * * * * * * *** * *
995739 GAACCTAGACTTTAA-AAAAATTGGTGAGAAG-AAACCCTTTCTTGCGAAACCAAAGCATCAATA
1 GAACTTTGATTTTAAGGAAGATAGGTCA-AAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATA
* * * * * * * * * *
995802 TCATGTATCCTTATGAGAAGACTATATTTATGGGGCCTAATC-CAAAAAAGAAT-AGTGATTAGT
65 TCATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTC-AAAATGAATGA-AGATCATT
* * * * * *
995865 ATGAGTATTCATGTTTGTCTTATTTAAAAGAT
128 ATG-GAATCCATGTTTGTCTCATTTAAGATAC
* *** * * * * * * * *
995897 GAACTTTGATTCTATCAAAAACA-GTGGAAGGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
1 GAACTTTGATTTTAAGGAAGATAGGT-CAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATA
* * * * * * * * *
995961 TCATGTAACCTAATGA-AGGGAATGTGTTTTTGGTTCAC-AGTCTTGAAAA-GAATGGAGA-CTG
65 TCATGTATCCTAATGAGA-AGAATGTGTTTATAGTGC-CTAATC-TCAAAATGAATGAAGATC-A
* * * *
996022 TTATGGGAATCGAAGCTTGTCTAATTTAAAAGATA-
126 TTAT-GGAATCCATGTTTGTCTCATTT--AAGATAC
* * *
996057 -AACTTTGATTTTAAGGAAGATAAGG-CAAAGAAAAGATTTCCTTGCAAAAGAAAATCATCAATA
1 GAACTTTGATTTTAAGGAAGAT-AGGTCAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATA
* * *
996120 TCAAT-TATCCTAATGAGGAGAATCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTA
65 TC-ATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTA
*
996184 CTGGAATCCATGTTTGTCTCATTTAAGTTAC
129 -TGGAATCCATGTTTGTCTCATTTAAGATAC
996215 GAACTT
1 GAACTT
996221 AGACTATACA
Statistics
Matches: 1016, Mismatches: 316, Indels: 205
0.66 0.21 0.13
Matches are distributed among these distances:
156 7 0.01
157 40 0.04
158 347 0.34
159 436 0.43
160 157 0.15
161 22 0.02
162 7 0.01
ACGTcount: A:0.37, C:0.14, G:0.19, T:0.31
Consensus pattern (158 bp):
GAACTTTGATTTTAAGGAAGATAGGTCAAAGAAAAGATTTTCTTGCAAAACAAAAGCATCAATAT
CATGTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCTCAAAATGAATGAAGATCATTATG
GAATCCATGTTTGTCTCATTTAAGATAC
Found at i:998997 original size:12 final size:11
Alignment explanation
Indices: 998975--999050 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
998965 AGAGAAAGAA
*
998975 GAGAGAGGAGG
1 GAGATAGGAGG
998986 GATGATAGGAGG
1 GA-GATAGGAGG
*
998998 AGAGACAGGA--
1 -GAGATAGGAGG
*
999008 GAGATAGTA--
1 GAGATAGGAGG
999017 GAGATAGGAGG
1 GAGATAGGAGG
999028 GATGATAGGAGG
1 GA-GATAGGAGG
*
999040 AGAGACAGGAG
1 -GAGATAGGAG
999051 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:999007 original size:24 final size:24
Alignment explanation
Indices: 998974--999059 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
998964 AAGAGAAAGA
*
998974 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
998998 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
999016 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
999040 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
999060 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:999026 original size:42 final size:42
Alignment explanation
Indices: 998965--999083 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
998955 TAGCCCTCAA
* *
998965 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
999007 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
999049 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
999084 GAGAGAAGAA
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 71 1.00
ACGTcount: A:0.43, C:0.03, G:0.46, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1007969 original size:28 final size:28
Alignment explanation
Indices: 1007937--1007992 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
1007927 GAAGAAACCC
*
1007937 TTTCTTGCAAAACCAAAGCATCGATATT
1 TTTCTTGCAAAACCAAAGCATCAATATT
1007965 TTTCTTGCAAAACCAAAGCATCAATATT
1 TTTCTTGCAAAACCAAAGCATCAATATT
1007993 GTGTATCCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (28 bp):
TTTCTTGCAAAACCAAAGCATCAATATT
Found at i:1009898 original size:475 final size:474
Alignment explanation
Indices: 1006558--1014576 Score: 7924
Period size: 475 Copynumber: 16.9 Consensus size: 474
1006548 TCATCAATAA
* * ** * *
1006558 GAGAAGACTATGTTTATGGTGCCTAATCCAGAAAAGAATAGGGATTAGTATGAGGATTAATGTTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTT
* * * * * *
1006623 GTCTTATTTAAGAGACGAACTTTGATTCTATCGAAAACTGTGGAAAGAAAAGCTTTTCTTGCAAC
66 GTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGCGAC
* * * * * *
1006688 TCCAAAGCATCAATGTCATGTAACCTAATGAAGAGAATGTGTTTTTGGTTCTCAGA-CTTGAAAA
130 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCA-ATCCTGAAAA
* * * * * * *
1006752 GAATGGAGACTGTTATGGGAATCGATGCTTGTCTAATTTAAGAGATAAACTTTGATTTTAA-GAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * * * * *
1006816 ACATAAGGCAAGGAAAAGATTTTCTTGTAGAAGAAAATCTTCAATATCAATTATCCTAATGAGGA
259 A-ATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* *
1006881 GAATATGGTTTGTAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
323 GAATGT-GTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * * *
1006946 CATTTAAGGCACAAACTTAGACTATACAAAAGTTGGTGGGAGGAAAG-CTTTCTTGCGAAACCAA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
* ** * *
1007010 AGCATCATTATTATTTATCCTTTT
452 AGCATCAATATCGTGTATCC-TAT
* **
1007034 GAGAAGACTATGTTTATAGCGTG--TAATCCTGAAAAGAAAT-GGGATTAGTATGACTATTTAAG
1 GAGAAGACTATGTTTAT-G-GTGCCTAATCCTGAAAAG-AATGGGGATTAGTATGACTATTCATT
* ** *
1007096 TTTGTCTTATTTAAGAGATAAACTTTCATTCTATCAAAAACGGTGG-AAGAAAAGCTTTTCTT-C
63 TTTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAGCTTTTCTTGC
* ** * * * *
1007159 AACACCAAAGCATCAATGTTGTGTGTCCTAATAAAGGGAATGTATTTTAGGTTCTCAATCCT-AA
127 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
** * * * *
1007223 AAGTAATGGAGACCGTTACGAGCATCAATGCTTGTCTTATTTAAAGGATGAACTTTGATTTTTAT
192 AA-TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGA-TTTTAA
** * * * * *
1007288 GG-AAATAGGGC-----TTA-ATTTCAACGTAAAAGAAAATCATCCATATAATTTATCCTAATGA
255 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* **** * * * *
1007346 GTAGGGCATGTTTATAGTGCCTACTCACAAAATGAATAAAGATCATTAGTAGAATCCATGTTTGT
320 GGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGT
* *
1007411 CTCATTTGAGGCCCGAACTTAGACTTTACAAATATTGGT-GGAAGGAAAGCCTTTCTTGTGAAAC
385 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAA-GAAAGCCTTTCTTGTGAAAC
* * * * *
1007475 CAAAGTATCAATATCTTTTGTCCTTTT
449 CAAAGCATCAATATCGTGTATCC-TAT
* ** * *
1007502 GAGAAGACTATGTTTATAGCACCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTCAATTTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTT
* * ** * *
1007567 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAATGGAAAGAAAAGCTTCTCTT-TGAC
66 GTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGCGAC
* * ** * ** *
1007631 ACCAAAGCATCAATGTGATATATCCTAACAAAAGGGAATCTGTTTTAGGTTCTTAATCCTAAAAA
130 ACCAAAGCATCAATGTCATGTATCCTAA-TGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
** * * * * *
1007696 TAATGGAGACGGTTACGAGCATCAATGCTTGTTTTATTTAATGGATGAACTTTGATTTTTAGGAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * *
1007761 AATAGGGCAAAGAAAAGTTTTCCATGTAATGAGGAGAATCATCAATGTCATTTATCCTAATGAGG
259 AATAGGGCAAAGAAAAGATTTCCATGCAA--AAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * *
1007826 AGAATGTGTATATTGTGCCAAAT--CAAATTAAA-GAAAATCATTACTAGAATCCATGTTTGTCT
322 AGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * * * **
1007888 CATTTGAAGTACGAACTTAGACTTTATAAAAATTGGTGGGAAGAAACCCTTTCTTGCAAAACCAA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
* *
1007953 AGCATCGATAT--T-T-TTCT-T
452 AGCATCAATATCGTGTATCCTAT
* * * * *** * *
1007971 GCA-AA-ACCAAAGCATCAATATTGTG--T-ATCCTGATGAGAAGACTATGTTTA-TGGT-T-CC
1 G-AGAAGA-CTATG--T--TTATGGTGCCTAATCCTGA--A-AAGA--ATGGGGATTAGTATGAC
* **** ** * * ** * * *
1008028 TAATCCAAAAATGAATAGGGATTAGTATGAG-TATTCATGTTTA-TCTTATTTAAGAGACAAACT
55 T-ATTCATTTTTG--T-GTTATT--TAAGAGCCAAAC-T-TTGATTC-TA--T--CA-A-AAACG
** ** * ***** * * * * *
1008091 TTGATTTTATCAAAAACTATGGAAAG-AAAAGCTTTTCTTGCAA-CAACAAAGCATCAATGTCAT
105 GGGA----AAGAAAAGCT-TTTCTTGCGACA-C----C---AAAGCATCAATG--TC-ATGT-AT
* ** * * * * * ***** * * * *
1008154 -GTAACCTAA-AGAA-GGGAATGT-GTTTTAGGTTCCT---AATCA-GGAAAATATTA-GAGTCT
153 CCTAA-TGAAGGGAATGTG-TTTTAGGTTCCCAATCCTGAAAATAATGGAGATTGTTACGAG---
* * * * * **** * * * *
1008210 ATTAGGA-GAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATATGGTAA
213 AAT-CGATG-CTTG-T-CTTAT-TTAAGGGATG----AACTTTGATTTTAAGGAAAATAGGGCAA
* * * * *
1008274 AGAAAAGATTTTCATGCAAAAGAAAATCTTCAATATCATTTATCCTAAGGAGAAAAATGTGTTTA
269 AGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
* * * * * * * *
1008339 TAGTGCTTAATCAC---A-AAATGAAGACCTTTACTAGAATCCTTATTTGTCACATTTTAGTCAC
334 TAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
* ** * * *
1008400 GAACTTAAACTTTATGAAAATTGCT-GGAAGAAAGTCTTTCTTGTGAAACCAAAGCATTAATATC
399 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC
*
1008464 GTGTATACCTAC
464 GTGTAT-CCTAT
* * * *
1008476 GAGAACACTATGTTCATGGTGCCTAAT-CTCGAAAAGAATAGGGATTACTATGACTATTC-TTGT
1 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATT-T
** * * * *
1008539 TTGTCCTATTTCAA-AGGCAAACTTTGATTCTATCGAAAACAGTGGAAAGAAAAGCATTTCTTGC
64 TTGTGTTATTT-AAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGC
* * * * * * * *
1008603 GACACCAAAGCATTAAAGTCAGGTATCCTAACGAAGGGCATGTGATTTT-GGATCCCAAACTTGA
127 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTAGGTTCCCAATCCTGA
* * * * ** * *
1008667 AAAGACTAGAGACTACTACGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTATG
191 AAATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
* * **
1008732 GAAAATAGGGCAAAGAGAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAG
256 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * *
1008797 GGGGACGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTC
321 GAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
1008862 TCATTTGAGGCATGAACTTAGACTTTACAGAAATTGGTGGGAAGAAACCCTTTCTTGTGAAACCA
386 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCA
1008927 AAGCATC-A-A-----TAT-C-AT
451 AAGCATCAATATCGTGTATCCTAT
** * * *
1008942 GAGAAGACTATGTTTATGGCACCTAATCCTTAAAAAAATGGGCATTAGTATGACTATTCA----T
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTT
** * * * * *
1009003 GT-TTATTTAAGAGATAAACTTTGAATCTATTAAAAACAGTGTAAAGAAAAGCTTTTCCTT-CAA
66 GTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTT-CTTGCGA
* * * * *
1009066 CATCAAAGCAACAATGTCATGTATCCTAATGAAGAGAATGTGTTTTAGCTTCCCAATCCTAAAAA
129 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * * *
1009131 TAATGGAGGTTGTTACGAGAATTGATGCTTGTCTTCTTAAAGGGATGAACTTTGATTTGAAGGAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * * * *
1009196 AAAAAGGTAAAGGAAAGATTTCCATGC-AAATAAAATCATTAATATCATTTATCCT-ATGAGGAG
259 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * *
1009259 AATGTGTTTATAGTGCCTAATCACAAAATGAATTAAGAACATTACTAGAATCCATGTTTGTCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* **
1009324 TTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCCGAAACCAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAG
* * *
1009389 CTTCAATATTGTGTATTCTTAT
454 CATCAATATCGTGTA-TCCTAT
* * *
1009411 AAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTGGT-TCGACTCTTCATTTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCATTTT
* * *
1009475 TCTGTTATTTAAGAGCCAATCTTTGATTCTATCAAAAACGGGAAAAAGAAAAGCTTTTCTTGCGA
65 TGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGGG-GAAAGAAAAGCTTTTCTTGCGA
* * * * *
1009540 TACCAACGCATCAATGTCATGTATCTTAATGAAGGGAATGTGTTCTAGATTCCCAATCCTGAAAA
129 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * * * *
1009605 TAATGTAGATTGTTACGAGCATCGATGGTTGTCCTATTTAAGGTATGAACATTGATTTTAAGGAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
1009670 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAA-GAAGGA
259 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATG-AGGA
* * * * *
1009734 -AATGTGGTTATAATGCCTAATCACAAAATAAAT-AATGATCTTTACTAGAATCCTTGTTTGTCA
323 GAATGTGTTTATAGTGCCTAATCACAAAATAAATGAA-GATCATTACTAGAATCCATGTTTGTCT
* * * * * * *
1009797 CATTTGAGTCACAAACTCAAACTTTTCAAAAATTGGTGGAAAGAAAGTCTTTCTTGTGAAACCAA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
*
1009862 AGCATCAATATCATGTATACCTAT
452 AGCATCAATATCGTGTAT-CCTAT
* * * *
1009886 GAGAACACTATGTTTAAGGAGCCTAAT-CTAGAAAAGAATAGGGATTAGTATGACTATTC-TTGT
1 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATT-T
* ** * * * * *
1009949 TTGT-TCTATTTCAGAGGTAAACTTTGATTCTATCGAAAGCGGTGAAAAGAAAAGCATTTCTTAC
64 TTGTGT-TATTTAAGAGCCAAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAGCTTTTCTTGC
* * * * * * *
1010013 GATACCAAAGCATCAAAGTCATGTATCCTAACGAAGGGAATGGGTTTGA-GTTCCCAAACTTGAA
127 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
* * * * ** * * *
1010077 AAGACTAGAGACTACTAC-AGGAATCGATGTTTGTCTTATTTAAGGGGTGAACTTTGATTTTATG
192 AATAATGGAGATTGTTACGA-GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAG
*
1010141 GAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
256 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * * *
1010206 GGGGACGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTAGTAGAATCCATGCTTGTC
321 GAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTC
* * * * *
1010271 TCATTTGAGGCACGAACATAGACTTTACAGAAATTGGTGAGAAGAAACCCTTTCTTGCGAAACCA
386 TCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCA
* ** ** * * *
1010336 AAGAAAAAATATTTTCTATCATTTT
451 AAGCATCAATATCGTGTATC-CTAT
** *
1010361 GAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGGATTAGTATGACTATTCATGTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGGATTAGTATGACTATTCATTTT
* * * * * * *
1010426 TGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACAGTGTAAAGAAAAGCTTATCTTACGA
65 TGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGCGA
*
1010491 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCGATCCTGAAAA
129 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * * **
1010556 TAATGGAGGTTGTTACGAGAATCGATGCTTGTCTTATTTAAGGTAAGATCAGTGATTTTAAGGAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
* * * *
1010621 AATAGGG-AAAAAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTTTCCTGATGAGGAG
259 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * * **
1010685 GATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTACTAGAATCCATGTTTACCTCA
324 AATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCA
* * * *
1010750 TTTGAGGTACGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCTGAAACTAAAG
389 TTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAG
*
1010815 CTTCAATATCGTGTATCCTTAT
454 CATCAATATCGTGTATCC-TAT
* *
1010837 -AGGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTGGT-TCGACTCTTCATTT
1 GA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCATTT
* * * * *
1010900 TTCT-TATATTTAAGAGCTAATCTTTGATTCTATGAAAAATGGGGGAAAGAAAAGCTTTTCTTGC
64 TTGTGT-TATTTAAGAGCCAAACTTTGATTCTATCAAAAA-CGGGGAAAGAAAAGCTTTTCTTGC
* * * * * *
1010964 GATACCAATGCATCAATGTCAAGTATCTTAATGAAGGGAATGTGTTCTAGGTTCCCAATCCTAAA
127 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
* * * * * *
1011029 AATAATGGAGACTGTTACGAGAATCGATGCTTATATTATTTAAGAGATGAATTTTGATTATAAGG
192 AATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * * *
1011094 AAAA-AGGGCAAAAAAAAGATTTCCATGCAACAGAAAATGATCAATAACATTTACCCTAATGAGG
257 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* *
1011158 AGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
322 AGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
* **
1011223 CATTTGAGGCATGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
*
1011288 AGCATCAATATTGTGTATCCTTAT
452 AGCATCAATATCGTGTATCC-TAT
* * * *
1011312 GCGAAGACTTTGTTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATTTT
*
1011376 TGTCTTATTTAAGA-CACAAACTTTGATTCTATCAAAAACGGCGGAAAGAAAAGC-TTTCTTGCG
65 TGTGTTATTTAAGAGC-CAAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAGCTTTTCTTGCG
* * * * **
1011439 ACACCAATGCATCAATGTCATGTATCCTAATCAAGGGACTGTGATTTAGGTTTGCAATCCTGAAA
128 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAA
* ** * * * * **
1011504 ATAATGGAG-TCTCTTGTGAGCATCGATGCTTGTCTTATTTAAGGTAAGATCAGTGATTTTAAGG
193 ATAATGGAGAT-TGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGG
* * * *
1011568 AAAATAGGG-AAAAAAAAGATTTCCATACAAAAGAAAATCATCAATATCATTTTTCCTGATGAGG
257 AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* * * * **
1011632 AGGATGTGTTTATAGTGCCTAATCATAAAATGAATGAAGATCATTATTAGAATCCATGTTTACCT
322 AGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
* *
1011697 CATTTGAGGTACGAACTTAGGCTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAA
*
1011762 AGCTTCAATATCGTGTATCCTTAT
452 AGCATCAATATCGTGTATCC-TAT
* * *
1011786 -AGGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTGGT-TCGACTCTTCATTT
1 GA-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCA-TT
* * **
1011849 TTTTTGTTATTTAAGAGCCAATCTTTGATTCTATCAAAAACAGGAAAAAGAAAAGCTTTTCTTGC
63 TTTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGC
* * * * *
1011914 GATACCAACGCATCAATGTCATGTATCTTAATGAAGGGAATGTGTTCTAGATTCCCAATCCTGAA
127 GACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAA
** * * ** *
1011979 AATAATATAGATTGTTACGAGCATCGATGGTTGTCCGATTTAAGGTG-TGAACATTGATTTTAAG
192 AATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGG-GATGAACTTTGATTTTAAG
* *
1012043 GAAAATAGGGCAAAGAAAAGATTTCTATGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAG
256 GAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAG
* * * *
1012108 GAAAATGTGGTTATAGTGCCTAATCACAAAATAAAT-AATGATCTTTACTAGAATCCTTGTTTGT
321 GAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAA-GATCATTACTAGAATCCATGTTTGT
* * * * * * * * *
1012172 CACATTTAAGTCACGAACTCAAACTTTACGAAAATTGGTGGAAAGAAAGTCTTTCTTGTGGAACC
385 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACC
1012237 AAAGCATCAATATCGTGTATACCTAT
450 AAAGCATCAATATCGTGTAT-CCTAT
* * *
1012263 GAGAACACTATGTTTATGGTGCCTAAT-CTAGAAAAGAGTAGGGATTAGTATGACTATTC-TTGT
1 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATT-T
** * * * * * *
1012326 TTGTCCTATTTCAGAGGCAAACTTTGATTCTATCGAAAACGGTGAAAAGAAAAGCATTTCTTACG
64 TTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAGCTTTTCTTGCG
* * * * * *
1012391 ATACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGCATG-GATTT-GAGTTCCCAAACTTGAA
128 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG-GTTCCCAATCCTGAA
* * * * ** * * *
1012454 AAGACTAGAGACTACTAC-AGGAATCGATGTTTTGTCTTATTTAAGGGGTGAACTTTGATTTTAT
192 AATAATGGAGATTGTTACGA-GAATCGATG-CTTGTCTTATTTAAGGGATGAACTTTGATTTTAA
*
1012518 GGAAAATAGGACAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
255 GGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
* * * * *
1012583 GGGGGACGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTAGTAGAATCCATGCTTGT
320 GGAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGT
* *
1012648 CTCATTTGAGGCACGAACTTAGACTTTACAGAAATTGGTGGGAAGAAA-CCTTTTCTTGCGAAAC
385 CTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCC-TTTCTTGTGAAAC
** * *
1012712 CAAAGCAAAAATATCGTGTATCATTTT
449 CAAAGCATCAATATCGTGTATC-CTAT
** *
1012739 GAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGGATTAGTATGACTATTCATGTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAAT-GGGGATTAGTATGACTATTCATTTT
* * * * * *
1012804 TGTCTTATTTAAGAGACAAACTTTGAATCTATCAAAAACGGTGTAAAGAAAAGCTTATCTTACGA
65 TGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGG-GGAAAGAAAAGCTTTTCTTGCGA
1012869 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
129 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * *
1012934 TAATGGAGGTTGTTATGAGAATCGATGCTTGTCTT-CTTAATGGGATGAGCTTTGATTTTAAGGA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATGAACTTTGATTTTAAGGA
* * * * *
1012998 AAATAAGGCAAAGGAAAGATTTCCATGCAAAAAAAAAATCATCAATGTCATTTATCCTAATGAAG
258 AAATAGGGCAAAGAAAAGATTTCCATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGG
* *
1013063 AGAATGTGTTTATAGTGTCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCT
322 AGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCT
* * **
1013128 CATTTGAGGCAAGAACTTAGACTTTACAAAAATTGGGGGGAAGAAAGCCTTTCTT-ACATAACCA
387 CATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGA-AACCA
*
1013192 AAGCTTCAATATCGTGTATCCTTAT
451 AAGCATCAATATCGTGTATCC-TAT
* * * *
1013217 CG-GAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTGGT-TCAACTCTTCATTC
1 -GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCATTT
* * * * * *
1013280 TTCTATTATTTAAGAGCCAATCTTTGATTCCATCAGAAACAGGGGAAAGAAAAGCTTTTTTTGCG
64 TTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-GGGGAAAGAAAAGCTTTTCTTGCG
* * * * *
1013345 ACTCCAACGCATCATTGTCATGTATCTTAATGAAGGGAATGTGTTTTGGGTTCCCAATCCTGAAA
128 ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAA
* * * * * * *
1013410 ATAATGGAGACTGTTACAAGAATCGAAGCTTTTCTTATTTAAGAGATGAATTTTGATTATAAGGA
193 ATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* * *
1013475 AAA-AGGGCAAAGAAAAGATTTCCTTGCAAAAGAAAATGGATC-ATAACATTTA-CTCTAATGAG
258 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAAT-CATCAATATCATTTATC-CTAATGAG
* * * *
1013537 GAGAATGTGTTTATAGTGCCTAATCAC-AAATGAGTGAAGTTCATTACTAGAATCCACGTTTGTC
321 GAGAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTC
* * *
1013601 TCATTTAAGGCATC-AACTTAGGCTTTACAAAAATTGGTGAGAAGAAAGCCTTTCTTGTGAAACC
386 TCATTTGAGGCA-CGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACC
*
1013665 AAAGCATCAATATTGTGTATCCTTAT
450 AAAGCATCAATATCGTGTATCC-TAT
* * * * *
1013691 GAGAAGACTTTGTTTATGGTGCCTAATCTTGACAAGAATGGGGATTAGTATGAGTATTCATGTTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTT
* *
1013756 GTCTTATTTAAGAGACAAACTTTGATTCTATCCAAAAACGGTGGAAAGAAAAGC---T-TT---A
66 GTGTTATTTAAGAGCCAAACTTTGATTCTAT-CAAAAACGG-GGAAAGAAAAGCTTTTCTTGCGA
* * * *
1013814 CACAAAAGCTTCAATGTCATGTATCC---T-AAGGGACTGTGTTTTAGGTTCGCAATCCTGAAAA
129 CACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAA
* * * * * ** *
1013875 TAATGGAGTTTGTTACAAGCATTGATGCTTGTCTTATTTAAGGTATGAACAGTGATTATAAGGAA
194 TAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAA
*
1013940 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCATTATCATTTATCCTAATGAGGAG
259 AATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAG
* * ** * *
1014005 GATGTCTTTATAGTATCTAATCACAAAA-AGAATGAAGATCATTACTAGAATCCTTGTTTGCCTC
324 AATGTGTTTATAGTGCCTAATCACAAAATA-AATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * * * *
1014069 ATTTGAGGCACAAACTTAGACTTTACAAAAATTTGTAGGAAAAAAGCCTTTCTTGCGAAACCAAA
388 ATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAA
*
1014134 GCTTCAATATCGTG-----TAT
453 GCATCAATATCGTGTATCCTAT
* * * *
1014151 --G-A-ACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTGGT-TCAACTCTTCATTTT
1 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT-GACTATTCA-TTT
* * * ** *
1014211 TTTTGTTATTTAAGAGCCAATCTTTGATTCTATCAAAAACGGGGGATCAAAAGCTTTTCATGCGA
64 TTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGGGGAAAGAAAAGCTTTTCTTGCGA
* *
1014276 CACCAACA-CATCAATGTCATGTATCTTAATGAAGGGAATGTGTTCTAGGTTCCCAATCCTGAAA
129 CACCAA-AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAA
* * * * *
1014340 ATAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGA
193 ATAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGA
* *
1014405 AAA-AGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATGATCAATAACATTTATCCTAATGAGGA
258 AAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA
* *
1014469 GAATGTGTTTATAGTGCCTAATCATAAAATAAATGAAGATCATTACTAGAATCCATATTTGTCTC
323 GAATGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTC
* * *
1014534 ATTTAAGGTATC-AACTTAGACCTTACAAAAATTGGTGGGAAGA
388 ATTTGAGGCA-CGAACTTAGACTTTACAAAAATTGGTGGGAAGA
1014577 TGATGATAAC
Statistics
Matches: 6218, Mismatches: 1074, Indels: 513
0.80 0.14 0.07
Matches are distributed among these distances:
455 10 0.00
456 55 0.01
457 32 0.01
458 2 0.00
459 130 0.02
460 36 0.01
461 166 0.03
462 28 0.00
463 1 0.00
464 90 0.01
465 223 0.04
466 244 0.04
467 96 0.02
468 189 0.03
469 110 0.02
470 97 0.02
471 105 0.02
472 5 0.00
473 32 0.01
474 978 0.16
475 1259 0.20
476 985 0.16
477 664 0.11
478 307 0.05
479 19 0.00
480 2 0.00
481 9 0.00
482 3 0.00
483 1 0.00
484 4 0.00
485 7 0.00
486 8 0.00
488 7 0.00
489 7 0.00
490 5 0.00
492 3 0.00
493 8 0.00
494 5 0.00
495 7 0.00
496 15 0.00
497 14 0.00
498 12 0.00
499 54 0.01
500 58 0.01
501 62 0.01
502 4 0.00
503 46 0.01
504 7 0.00
505 6 0.00
506 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATTTTT
GTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAACGGGGAAAGAAAAGCTTTTCTTGCGACA
CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATA
ATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAA
TAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAA
TGTGTTTATAGTGCCTAATCACAAAATAAATGAAGATCATTACTAGAATCCATGTTTGTCTCATT
TGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGTGAAACCAAAGCA
TCAATATCGTGTATCCTAT
Found at i:1016957 original size:42 final size:41
Alignment explanation
Indices: 1016896--1017013 Score: 173
Period size: 42 Copynumber: 2.9 Consensus size: 41
1016886 TAGCCCTCAA
* *
1016896 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGAC-GG
* *
1016938 AGAGATAGTAGAGATAGGAGGGATTATAGGAGGAGAGACGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACGG
* *
1016979 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1017014 GAGAGAAGAA
Statistics
Matches: 68, Mismatches: 8, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
41 33 0.49
42 35 0.51
ACGTcount: A:0.42, C:0.03, G:0.46, T:0.09
Consensus pattern (41 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACGG
Found at i:1016998 original size:41 final size:42
Alignment explanation
Indices: 1016905--1017013 Score: 175
Period size: 41 Copynumber: 2.6 Consensus size: 42
1016895 AAGAGAAAGA
*
1016905 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAGT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
* *
1016947 AGAGATAGGAGGGATTATAGGAGGAGAGAC-GGAGAGATAAT
1 AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
*
1016988 AGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGAGAGGAGGGATGATAGGAGGAG
1017014 GAGAGAAGAA
Statistics
Matches: 61, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 33 0.54
42 28 0.46
ACGTcount: A:0.40, C:0.03, G:0.47, T:0.10
Consensus pattern (42 bp):
AGAGAGAGGAGGGATGATAGGAGGAGAGACAGGAGAGATAAT
Found at i:1025866 original size:12 final size:11
Alignment explanation
Indices: 1025840--1025915 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1025830 TCTATTATCT
*
1025840 CTCCTGTCTCTC
1 CTCCTATCTC-C
1025852 CTCCTATCATCC
1 CTCCTATC-TCC
1025864 CTCCTATCT--
1 CTCCTATCTCC
*
1025873 CTACTATCT--
1 CTCCTATCTCC
*
1025882 CTCCTGTCTCTC
1 CTCCTATCTC-C
1025894 CTCCTATCATCC
1 CTCCTATC-TCC
*
1025906 CTCCTTTCTC
1 CTCCTATCTC
1025916 TTTTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.47, G:0.03, T:0.41
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1025925 original size:42 final size:42
Alignment explanation
Indices: 1025807--1025925 Score: 175
Period size: 42 Copynumber: 2.8 Consensus size: 42
1025797 TTCTTCTCTC
* **
1025807 CTCCTCCTGTCATCCCTCCCCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTGTCT
*
1025849 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTGTCT
* * *
1025891 CTCCTCCTATCATCCCTCCTTTCTCTTTTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTATTATCTCT
1025926 TTGAGGGCTA
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 69 1.00
ACGTcount: A:0.08, C:0.45, G:0.03, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTATTATCTCTCCTGTCT
Found at i:1029668 original size:475 final size:475
Alignment explanation
Indices: 1028165--1030085 Score: 2849
Period size: 475 Copynumber: 4.0 Consensus size: 475
1028155 CTCGTGGCAT
* *
1028165 AAATGATCAATATCATTTATCCTAAT-AAGGAGGATGTGTTTATATTGCCTAATCACAAAATGAA
1 AAATCATCAATATCATTTATCCTAATGAA-GAGGATGTGTTTATAGTGCCTAATCACAAAATGAA
*
1028229 TGAAGATCATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACT
65 TGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACT
* * * *
1028294 GGTGGGAAGAAAGTCATT-CTTGCAAAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACT
130 GGTGGGAAGAAAGCCTTTAC-TGCAAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACT
* * ** * *
1028358 TTGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTACAAGTATTCATGTTTGTCTTATTT
194 ATGATTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTT
* * * * * * * *
1028423 AAGAGACAAACATTGATTCTATCAAAAACGGTGCAAAAAAAAGCCTTTCTCGCAACACCAAAGCA
259 AAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAACAAAGCA
* * * * * ** * * *
1028488 TCAATGTCATGTGA-CCCAATGGAGGGAATGTGTTTT-AGGTTCCCAATCCT-AAA-AATAAGGG
324 TCAAAGTCATGT-ATCCTAACGAAGGGTATGCATTTTCA-GTTCCCAAACTTGAAAGACT-A--G
* *
1028549 AGACTGTTACGAGAATCGATGCTTGTCTTATTTAAAAGGTGAACTTCGATTTTATGGAAAATAGG
384 AGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAGG
1028614 GCAAAGAAAAGATTTCCATGCAAAAGA
449 GCAAAGAAAAGATTTCCATGCAAAAGA
* * *
1028641 AAATCATCAATATCATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATGACAAAGTGAAT
1 AAATCATCAATATCATTTATCCTAATGAAGAGGATGTGTTTATAGTGCCTAATCACAAAATGAAT
*
1028706 GAATATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC-TTACAAAAACTG
66 GAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
* * * *
1028770 GGGGGAAGAAAGCCTTTACTGCAAAACCAAAGTATCAATATCGTGTAACCTTTTGAGAAGACTAT
131 GTGGGAAGAAAGCCTTTACTGCAAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTAT
* * * *
1028835 GAATACGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TCATGTTTATATTATTTAA
196 GATTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
*
1028899 GAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGTGAC-ACTAAAGCAT
261 GAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAAC-AAAGCAT
* *
1028963 CAAAGTCTTGTATCCTAACGAAGGGTATGCATTTTC-GATTCCCAAACTTGAAAGACTAGAGATT
325 CAAAGTCATGTATCCTAACGAAGGGTATGCATTTTCAG-TTCCCAAACTTGAAAGACTAGAGACT
* * *
1029027 GTTATGAGAATCAATGCTTG-CTTGTTTGAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAA
389 GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAA
*
1029091 GAAAAGATTTTCATGCAAAAGA
454 GAAAAGATTTCCATGCAAAAGA
* *
1029113 AAATCATCAATATCATTTATCCTAACGAAGAGGACGTGTTTATAGTGCCTAATCACAAAATGAAT
1 AAATCATCAATATCATTTATCCTAATGAAGAGGATGTGTTTATAGTGCCTAATCACAAAATGAAT
*
1029178 GAAGATCATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
66 GAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
* *
1029243 GTGGGAAGAAAGCCTTTACTCCGAAACCAAAGCATCAATATC-TGTACCCTTTTGAGAAGACTAT
131 GTGGGAAGAAAGCCTTTACTGCAAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTAT
**
1029307 GATTATGGTGCCTAATCCTAAAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTA
196 GATTATGGTGCCTAAT-CTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTA
* *
1029372 AGAGGCAAACTTTGATTCTATCGAAAACGGAGGAAAGAAAAGCATTTCTTGCGACAACAAAGCAT
260 AGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAACAAAGCAT
* * * *
1029437 GAAAGTCTTGTATCCTAACGAAGGGTATGCGTTTTCAGTTCCAAAACTTGAAAGACTAGAGACTG
325 CAAAGTCATGTATCCTAACGAAGGGTATGCATTTTCAGTTCCCAAACTTGAAAGACTAGAGACTG
* *
1029502 TTACAAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAAGGCAAAG
390 TTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAG
*
1029567 AAAAGATTTCCACGCAAAAGA
455 AAAAGATTTCCATGCAAAAGA
* **
1029588 AAATCATCAATATCATTTATCCTAATGAGGAGGATGCATTTATAGTGCCTAATCACAAAATGAAT
1 AAATCATCAATATCATTTATCCTAATGAAGAGGATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * *
1029653 GAAGATCATTAGTAGAACCCATGTTTGTCTCATTTGAGGCATGAACTTCGACTTTACAAAAACTG
66 GAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
* *
1029718 GTGGGAAGAAAGCCTTTACTACGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTAT
131 GTGGGAAGAAAGCCTTTACTGCAAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTAT
*
1029783 GATTGTGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
196 GATTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
* * *
1029848 GAGGCAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATC
261 GAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAACAAAGCATC
* * ** *
1029913 AAAGTCATGCATCCTAATGAAGGGTATGCATTTTTGGTTCCCAAACTTGAAAGACTGGAGACTGT
326 AAAGTCATGTATCCTAACGAAGGGTATGCATTTTCAGTTCCCAAACTTGAAAGACTAGAGACTGT
* * * *
1029978 TATGAGAATCGATGCTTGTCCTGTTTAAACGATGAACTTTGATTTTATGGAAAATAGGGCAAAGA
391 TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGA
*
1030043 AAAGATTTCCATACAAAAGA
456 AAAGATTTCCATGCAAAAGA
*
1030063 AAATCATCAATAACATTTATCCT
1 AAATCATCAATATCATTTATCCT
1030086 TGTTAGGATC
Statistics
Matches: 1313, Mismatches: 117, Indels: 31
0.90 0.08 0.02
Matches are distributed among these distances:
472 207 0.16
473 102 0.08
474 255 0.19
475 600 0.46
476 147 0.11
477 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.29
Consensus pattern (475 bp):
AAATCATCAATATCATTTATCCTAATGAAGAGGATGTGTTTATAGTGCCTAATCACAAAATGAAT
GAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
GTGGGAAGAAAGCCTTTACTGCAAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACTAT
GATTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAA
GAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACAACAAAGCATC
AAAGTCATGTATCCTAACGAAGGGTATGCATTTTCAGTTCCCAAACTTGAAAGACTAGAGACTGT
TACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGGAAAATAGGGCAAAGA
AAAGATTTCCATGCAAAAGA
Found at i:1029885 original size:158 final size:158
Alignment explanation
Indices: 1029236--1029914 Score: 371
Period size: 158 Copynumber: 4.3 Consensus size: 158
1029226 AGACTTTACA
* * *
1029236 AAAACTGGTGGGAAGAAAGCCTTTACTCCGAAACCAAAGCATCAATATC-TGTACCCTTTTGAGA
1 AAAAC-GGTGGAAAGAAAGCATTT-CTACGAAACCAAAGCATCAATATCATGTACCCTTTTGAGA
* *
1029300 AGACTATG-ATTATGGTGCCTAATCCTAAAAAAGAATGGGGATTAGTATGACTATTCATGTTTAT
64 AGACTATGCATTATAGTGCCTAAT-CTAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTAT
1029364 CTTATTTAAGAGGCAAACTTTGATTCTATCG
128 CTTATTTAAGAGGCAAACTTTGATTCTATCG
* * * * * *
1029395 AAAACGGAGGAAAGAAAAGCATTTCTTGCGACAA-CAAAGCATGAA-AGTCTTGTATCC---TAA
1 AAAACGGTGGAAAG-AAAGCATTTC-TACGA-AACCAAAGCATCAATA-TCATGTACCCTTTTGA
** * * * * * * * * * * * *
1029455 CGAAGGGTATGCGTTTTCAGTTCCAAAACTTG-AAAGACTAGAGACT-GT-T-ACAAGAATCGAT
62 -GAAGACTATGCATTAT-AGTGCCTAATCTAGAAAAGAATGGGGATTAGTATGAC--TATTC-AT
* * * * ** * *
1029516 GCTTGTCTTGTTTAAAAGGTGAACTTTGATTTTATGG
122 GTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCG
** * * ** * * * **
1029553 AAAATAAG-GCAAAGAAAAG-ATTTCCACGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
1 AAAA-CGGTGGAAAG-AAAGCATTTCTACG--AAACCAAAGCATCAATATCATGTACCCTTTTGA
** * ** **
1029616 G--GAGGATGCATTTATAGTGCCTAATC-ACAAAATGAATGAAGATCATTAGTA-GA--ACCCAT
62 GAAGACTATGCA-TTATAGTGCCTAATCTAGAAAA-GAATG--G-GGATTAGTATGACTATTCAT
* * * *
1029675 GTTTGTCTCATTT--GAGGCATGAACTTCGACTT-TA-CA
122 GTTTATCTTATTTAAGAGGCA--AACTTTGA-TTCTATCG
* *
1029711 AAAACTGGTGGGAAGAAAGCCTTTACTACGAAACCAAAGCATCAATATCATGTACCCTTTTGAGA
1 AAAAC-GGTGGAAAGAAAGCATTT-CTACGAAACCAAAGCATCAATATCATGTACCCTTTTGAGA
* * *
1029776 AGACTATG-ATTGTGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATC
64 AGACTATGCATTATAGTGCCTAATCTAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATC
1029840 TTATTTAAGAGGCAAACTTTGATTCTATCG
129 TTATTTAAGAGGCAAACTTTGATTCTATCG
** *
1029870 AAAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAA
1 AAAACGGTGGAAAG-AAAGCATTTC-TACGAAACCAAAGCATCAA
1029915 AGTCATGCAT
Statistics
Matches: 374, Mismatches: 99, Indels: 94
0.66 0.17 0.17
Matches are distributed among these distances:
155 9 0.02
156 6 0.02
157 19 0.05
158 193 0.52
159 105 0.28
160 34 0.09
161 3 0.01
162 2 0.01
163 2 0.01
164 1 0.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (158 bp):
AAAACGGTGGAAAGAAAGCATTTCTACGAAACCAAAGCATCAATATCATGTACCCTTTTGAGAAG
ACTATGCATTATAGTGCCTAATCTAGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTT
ATTTAAGAGGCAAACTTTGATTCTATCG
Found at i:1030480 original size:20 final size:20
Alignment explanation
Indices: 1030455--1030508 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
1030445 CTACCACTGT
* *
1030455 TTGTATCAATACATGGT-ACA
1 TTGTATCGATACATGATGA-A
1030475 TTGTATCGATACATGATGAA
1 TTGTATCGATACATGATGAA
1030495 TTGTATCGATACAT
1 TTGTATCGATACAT
1030509 TGCTTTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.33, C:0.13, G:0.17, T:0.37
Consensus pattern (20 bp):
TTGTATCGATACATGATGAA
Found at i:1036765 original size:20 final size:20
Alignment explanation
Indices: 1036727--1036766 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
1036717 TTACAAATTT
1036727 CTTCATTTTCACTTCAAAATA
1 CTTCATTTTCAC-TCAAAATA
1036748 CTTCATTTTTCA-TCAAAAT
1 CTTCA-TTTTCACTCAAAAT
1036767 TACCAACAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 5 0.28
22 6 0.33
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.45
Consensus pattern (20 bp):
CTTCATTTTCACTCAAAATA
Found at i:1039134 original size:20 final size:20
Alignment explanation
Indices: 1039091--1039163 Score: 78
Period size: 20 Copynumber: 3.7 Consensus size: 20
1039081 AGATTATGCT
**
1039091 TTGTATCAATACATGTTC-A
1 TTGTATCAATACATGGACAA
1039110 TTGTATCAATACATGGACAA
1 TTGTATCAATACATGGACAA
* *
1039130 TTGTATCGATACAT-GATGAA
1 TTGTATCAATACATGGA-CAA
*
1039150 TTGTATCGATACAT
1 TTGTATCAATACAT
1039164 TGCTTCCAAC
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
19 18 0.38
20 30 0.62
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.37
Consensus pattern (20 bp):
TTGTATCAATACATGGACAA
Found at i:1041304 original size:12 final size:11
Alignment explanation
Indices: 1041282--1041357 Score: 61
Period size: 12 Copynumber: 6.9 Consensus size: 11
1041272 AGAGAAAGAA
*
1041282 GAGAGAGGAGG
1 GAGATAGGAGG
1041293 GATGATAGGAGG
1 GA-GATAGGAGG
1041305 AGAGATAGGA--
1 -GAGATAGGAGG
*
1041315 GAGATAGTA--
1 GAGATAGGAGG
1041324 GAGATAGGAGG
1 GAGATAGGAGG
1041335 GATGATAGGAGG
1 GA-GATAGGAGG
*
1041347 AGAGACAGGAG
1 -GAGATAGGAG
1041358 AGATAATAGA
Statistics
Matches: 55, Mismatches: 4, Indels: 11
0.79 0.06 0.16
Matches are distributed among these distances:
9 16 0.29
11 4 0.07
12 31 0.56
13 4 0.07
ACGTcount: A:0.39, C:0.01, G:0.49, T:0.11
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1041318 original size:33 final size:30
Alignment explanation
Indices: 1041272--1041362 Score: 76
Period size: 33 Copynumber: 2.8 Consensus size: 30
1041262 TAGCCCTCAA
* *
1041272 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGG
1 AGAGATAGGAGAGAGAGGA--GA-GATAGGAGG
* *
1041305 AGAGATAGGAGAGATAGTAGAGATAGGAGG
1 AGAGATAGGAGAGAGAGGAGAGATAGGAGG
1041335 -GATGATAGGAGGAGAGACAGGAGAGATA
1 AGA-GATAGGA-GAGAG--AGGAGAGATA
1041363 ATAGAGAGAG
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
29 2 0.04
30 16 0.33
31 6 0.12
33 24 0.50
ACGTcount: A:0.44, C:0.01, G:0.45, T:0.10
Consensus pattern (30 bp):
AGAGATAGGAGAGAGAGGAGAGATAGGAGG
Found at i:1041327 original size:11 final size:9
Alignment explanation
Indices: 1041302--1041362 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1041292 GGATGATAGG
1041302 AGGAGAGAT
1 AGGAGAGAT
1041311 AGGAGAGAT
1 AGGAGAGAT
*
1041320 AGTAGAGAT
1 AGGAGAGAT
*
1041329 AGGAGGGAT
1 AGGAGAGAT
* *
1041338 --GATAG-G
1 AGGAGAGAT
*
1041344 AGGAGAGAC
1 AGGAGAGAT
1041353 AGGAGAGAT
1 AGGAGAGAT
1041362 A
1 A
1041363 ATAGAGAGAG
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.43, C:0.02, G:0.44, T:0.11
Consensus pattern (9 bp):
AGGAGAGAT
Found at i:1041333 original size:42 final size:42
Alignment explanation
Indices: 1041272--1041390 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1041262 TAGCCCTCAA
* * *
1041272 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGATAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1041314 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* *
1041356 AGAGATAATAGAGAGAGGAGGGATGACAGGAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1041391 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.43, C:0.02, G:0.46, T:0.09
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1046409 original size:158 final size:155
Alignment explanation
Indices: 1046208--1048333 Score: 754
Period size: 158 Copynumber: 13.5 Consensus size: 155
1046198 TTCTTGCGAA
* * * * * * *
1046208 ACCAAAGCATCAATATCGTGTATCCTTATGCGAAGACTTTGTTTATGGTGCCTAATCTCAAAAAG
1 ACCAAAGCATCAATATCATGTAACCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * **
1046273 AATGGGGATTAGTATTAGTATTCATGTTTGTCTTATTTAAGAGACAAACAGTGATTCTATCAAAA
65 AATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
1046338 ACGATGGAAAAAAAGCTTTCCTACAAC
129 ACGGTGGAAAAAAAGCTTTCCTGCAAC
* * * *
1046365 ACCAAAGCATCAATGTCATTGTAACCTAACGAAGGGAATGTGTTTAAGGTTCCTAATC-CTAAAA
1 ACCAAAGCATCAATATCA-TGTAACCTAATG-AGGGAATGTGTTTATGGTGCCTAATCTC-AAAA
* * * * * * * ** *
1046429 ATAATGGAGACT-GTTATGAGAATCAATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTATGC
63 AGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-C
* * * * ** *
1046493 AAAATA-AG-GCAAAGGAAAGATTTCCACACAAAA
125 AAAA-ACGGTGGAAA-AAAAGCTTTCC-TGC-AAC
** * * * * * * *
1046526 AAAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
1 ACCAAAGCATCAATATCATGTAACCTAATGAGG-GAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * * * * * *
1046591 AATGAAGATTATTA-GTAGAATCCATGTTTGTCTCATTTGAG-GCACGAACTTAGACTT-TAT-A
65 AATGGAGATTAGTATG-AG-ATTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTATCA
*
1046652 AAAACTGGTGGAAAAAAAGCCTTTACTGCGAA-
126 AAAAC-GGTGGAAAAAAAG-CTTTCCTGC-AAC
* * ** * * * *
1046684 ACCAAAGTATCAATATCATGTACCCTTTTGAGAAGACTATGTTTATGGTGCCTAATC-CTGAAAA
1 ACCAAAGCATCAATATCATGTAACCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTC-AAAAA
* * * * * *
1046748 GAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATTCTATCGAG
64 GAATGGAGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* **
1046813 AACGGTGGAAAGAAAAGCATTTCTTGTGAC
128 AACGGTGGAAA-AAAAGC-TTTCCTGCAAC
* * ** * * *
1046843 ACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGTATGCATTT-TCGGTTCCCAATCTTAAAA
1 ACCAAAGCATCAATATCATGTA-ACCTAATG-AGGGAATGTGTTTAT-GGTGCCTAATCTCAAAA
* * ** * ** * * ** * *
1046906 GGATTGGAGACCATTACAAGAATCGATGCTTGTCTTATTTAAGAGGTAAACTTTGATTTTATGGA
63 AGAATGGAGATTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CA
* * * *
1046971 AAAA-AG-GCAAAGAAAAGATTTCCATGCAAA
126 AAAACGGTGGAAA-AAAAGCTTTCC-TGCAAC
** ** * * * * * * *
1047001 AGAAAATAATCCATATCATTTATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATG
1 ACCAAAGCATCAATATCATGTAACCTAATGAGG-GAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * * * * * *
1047066 AAT-GATGA-TCGTTACT-AGAGTCCATGTTTATCTCATTTGAG-GCACGAACTTAGACTT-TAT
65 AATGGA-GATTAG-TA-TGAGA-TTCATGTTTGTCTTATTTAAGAG-ACAAACTTTGA-TTCTAT
* * * * *
1047126 -AAAAACTGGTGGGAAGAAAGCCATTCTTGTGAA-
124 CAAAAAC-GGTGGAAAAAAAG-CTTTCCTG-CAAC
* * * * * * *
1047159 ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCTCGAAAAG
1 ACCAAAGCATCAATATCATGTAACCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * *
1047224 AATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCTATCAAAA
65 AATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* * *
1047289 ATGGTGGAAAAAATGCTTTCTTGCAAC
129 ACGGTGGAAAAAAAGCTTTCCTGCAAC
* * * * *
1047316 ATCAAAGCCTCAATGTCATGTAACCTAATGAAGGGAATGTGCTTTA-GGTTCCCAATACT-AAAA
1 ACCAAAGCATCAATATCATGTAACCTAATG-AGGGAATGTG-TTTATGGTGCCTAAT-CTCAAAA
* * * * * * * *
1047379 ATAATGGAGACT-GTTATGAGAATCGATGTTTATCTTCTTTATAG-GATAAACTTTGATTTTAAG
63 AGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTA-AGAGACAAACTTTGATTCT-AT
* * * * * * *
1047442 GAAAATA-AG-GCAAAGGAAGGATTTCTGTGCAA-
124 CAAAA-ACGGTGGAAA-AAAAGCTTTC-CTGCAAC
* * * * * * *
1047474 A--AAATCATCAATCTCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATG
1 ACCAAAGCATCAATATCATGTAACCTAATGAGG-GAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * * * * * ** * *
1047537 AATGAAGATCATTA-GTAGACTCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTT-TA-CAA
65 AATGGAGATTAGTATG-AGA-TTCATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAA
* * **
1047599 AAACTGGTGGGAAGAAAGGCTTTATTGCGAA-
127 AAAC-GGT-GGAAAAAAAGCTTTCCTGC-AAC
* * * ** * * * *
1047630 ACCAAAGTATCAATATCTTGTACCCTTTTAAGAAGACTATGTTTATGGTGCCTAATC-CTAAAAA
1 ACCAAAGCATCAATATCATGTAACCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTC-AAAAA
* * * * * * * *
1047694 GAATGGGGATTAGTGTGACTATTCACGTTTATCTTATTTAAAAGGCAAACTTCGATTCTATCAAA
64 GAATGGAGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA
* *
1047759 AACGGTGGAAAAAAAAGCATTTCATGCGAC
128 AACGGTGG-AAAAAAAGC-TTTCCTGCAAC
* * * * * * * * **
1047789 ACCAAATCATCAATGTCATGTATA-CTAATGAAGGGTATTTGTTTTTGGTTCCCAAACTTGAAAA
1 ACCAAAGCATCAATATCATGTA-ACCTAATG-AGGGAATGTGTTTATGGTGCCTAATCTCAAAAA
* * * * * * * * *** * * *
1047853 GACTAGAGACTATTACGAGAATCTATGCTTG-CTTATTTAAGGGGTGAACATTGATTTTATGGAA
64 GAATGGAGATTAGTATGAGATTC-ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-CAA
* * *
1047917 AATA-GG-GCAACGAAAAGATTTCCATGCATA-
127 AA-ACGGTGGAA-AAAAAGCTTTCC-TGCA-AC
** * * * * * * *
1047947 ATAAAATCATCAATATCATTTATCCTAATGAGGAGGACT-TGTTTATAGTGCCTAATAT-AAAAT
1 ACCAAAGCATCAATATCATGTAACCTAATGA-G-GGAATGTGTTTATGGTGCCTAATCTCAAAAA
* * * * ** * *
1048010 GAATGAAGATCA-TTTGTAGAGTCCA--TTTGTCGAATTT--GAGGCAAGAATTTAGACTT-TA-
64 GAATGGAGATTAGTATG-AGA-TTCATGTTTGTCTTATTTAAGAGACAA-ACTTT-GA-TTCTAT
* * * ** *
1048068 CAAAAACTGTTGGGAAGAAAGCCACTCTTGCGAA-
124 CAAAAAC-GGTGGAAAAAAAG-CTTTCCTGC-AAC
* * * * * * *
1048102 ACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCTCGAAAAG
1 ACCAAAGCATCAATATCATGTAACCTAATGAG-GGAATGTGTTTATGGTGCCTAATCTCAAAAAG
* * * * *
1048167 AATGGGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACATTGATTCCATCAAAA
65 AATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAA
* *
1048232 ACGGTGCCAAAAAAAAAGCTTTCTTGCAAC
129 ACGGTG---GAAAAAAAGCTTTCCTGCAAC
* * * * *
1048262 ACCAAAGCTTCAATGTCATGTAACCTAATGAAGGGAATGTGTTTAAGGTTCCCAATC-CTAAAAA
1 ACCAAAGCATCAATATCATGTAACCTAATG-AGGGAATGTGTTTATGGTGCCTAATCTC-AAAAA
*
1048326 TAATGGAG
64 GAATGGAG
1048334 CCTGTTATGA
Statistics
Matches: 1405, Mismatches: 430, Indels: 265
0.67 0.20 0.13
Matches are distributed among these distances:
153 2 0.00
154 18 0.01
155 73 0.05
156 126 0.09
157 172 0.12
158 579 0.41
159 252 0.18
160 154 0.11
161 29 0.02
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (155 bp):
ACCAAAGCATCAATATCATGTAACCTAATGAGGGAATGTGTTTATGGTGCCTAATCTCAAAAAGA
ATGGAGATTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC
GGTGGAAAAAAAGCTTTCCTGCAAC
Found at i:1047934 original size:946 final size:939
Alignment explanation
Indices: 1046071--1049322 Score: 4115
Period size: 946 Copynumber: 3.5 Consensus size: 939
1046061 CGAGCTTTCA
* ** * *
1046071 ATCCTAATGAGGAGGACCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATCAATAGAGT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * *
1046136 CCATG-TTAGTCTCATTTGAGGTACGAACTTAGACTTTAAAAAAACTAGTGGGAAGAAAGCCATT
66 CCATGTTTA-TCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT
*
1046200 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGCGAAGACTTTGTTTATGGTGCCTAATC
130 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATC
* * * *
1046265 TCAAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCTTATTTAAGAGACAAACAGTGATTC
195 TCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTC
* * * *
1046330 TATCAAAAACGATGGAAAAAAAGCTTTCCTACAACACCAAAGCATCAATGTCATTGTAACCTAAC
260 TATCAAAAACGGTGGAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCA-TGTAACCTAAT
* * *
1046395 GAAGGGAATGTGTTTAAGGTTCCTAATCCTAAAAATAATGGAGACTGTTATGAGAATCAATGCTT
324 GAAGGGAATGTGTTTAAGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATG-TT
* * * **
1046460 GTCTTCTTTATGGGATGAACTTTGATTTTATGCAAAATAAGGCAAAGGAAAGATTTCCACACAAA
388 ATCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGC---
*
1046525 AAAAAAATCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
450 AAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAAT
* *
1046590 GAATGAAGATTATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAA
515 GAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAA
* * *
1046655 ACTGGTGGAAAAAAAGCCTTTACTGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGA
580 ACTGGTGGGAAGAAAGCCTTTATTGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGA
*
1046720 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTAT
645 CTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCACGTTTATCTTAT
* * * *
1046785 TTAAGAGGCAAACTTTGATTCTATCGAGAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAG
710 TTAAGAGGCAAAC-TTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGCGACACCAAAG
** *
1046850 CATCAATGTCATGTATACTAATGAAGGGTATGCATTTTCGGTTCCCAATCTTAAAAGGATTGGAG
774 CATCAATGTCATGTATACTAATGAAGGGTATGTGTTTTAGGTTCCCAATCTTAAAA-GA-T-GAG
* * *
1046915 ACCATTACAAGAATCGATGCTTGTCTTATTTAAGAGGTAAACTTTGATTTTATGGAAAA-AAGGC
836 A-CATTACGAGAATC-ATGCTTG-CTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAAGGC
* *
1046979 AAAGAAAAGATTTCCATGCAAAAGAAAATAATCCATATCATTT
898 AAAGAAAAGATTTCCATGCAAAA-AAAATCATCAATATCATTT
* * * *
1047022 ATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGATGATCGTTACTAGAGT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
*
1047087 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTATAAAAACTGGTGGGAAGAAAGCCATTC
66 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
*
1047152 TTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
131 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
1047217 CGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCT
196 CGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCT
* * * *
1047282 ATCAAAAATGGTGGAAAAAATGCTTTCTTGCAACATCAAAGCCTCAATGTCATGTAACCTAATGA
261 ATCAAAAACGGTGGAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGA
1047347 AGGGAATGTGCTTT-AGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATGTTTA
326 AGGGAATGTG-TTTAAGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATG-TTA
* * * **
1047411 TCTTCTTTATAGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAGGATTTCTGTGC-AAA
389 TCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAA
* *
1047475 AAATCATCAATCTCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAAT
454 AAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* *
1047540 GAAGATCATTAGTAGACTCCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAAAACTG
519 GAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTG
* * *
1047605 GTGGGAAGAAAGGCTTTATTGCGAAACCAAAGTATCAATATCTTGTACCCTTTTAAGAAGACTAT
584 GTGGGAAGAAAGCCTTTATTGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGACTAT
* *
1047670 GTTTATGGTGCCTAATCCTAAAAAGAATGGGGATTAGTGTGACTATTCACGTTTATCTTATTTAA
649 GTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCACGTTTATCTTATTTAA
* * *
1047735 AAGGCAAACTTCGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCATGCGACACCAAATCATC
714 GAGGCAAACTT-GATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATC
* * *
1047800 AATGTCATGTATACTAATGAAGGGTATTTGTTTTTGGTTCCCAAACTTGAAAAGACTAGAGACTA
778 AATGTCATGTATACTAATGAAGGGTATGTGTTTTAGGTTCCCAATCTT-AAAAGA-T-GAGAC-A
* * *
1047865 TTACGAGAATCTATGCTTGCTTATTTAAGGGGTGAACATTGATTTTATGGAAAATAGGGCAACGA
839 TTACGAGAATC-ATGCTTGCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGA
*
1047930 AAAGATTTCCATGCATAATAAAATCATCAATATCATTT
903 AAAGATTTCCATGCA-AAAAAAATCATCAATATCATTT
* * *
1047968 ATCCTAATGAGGAGGACT-TGTTTATAGTGCCTAAT-ATAAAATGAATGAAGATCATTTGTAGAG
1 ATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAG
* ** * * * *
1048031 TCCA--TTTGTCGAATTTGAGGCAAGAATTTAGACTTTACAAAAACTGTTGGGAAGAAAGCCACT
65 TCCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT
1048094 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATC
130 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATC
* * *
1048159 TCGAAAAGAATGGGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACATTGATTC
195 TCGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTC
* * *
1048224 CATCAAAAACGGTGCCAAAAAAAAAGCTTTCTTGCAACACCAAAGCTTCAATGTCATGTAACCTA
260 TATCAAAAACGGTG---GAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTA
* *
1048289 ATGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTG---T-----T--ATG-
322 ATGAAGGGAATGTGTTTAAGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATGT
* * *
1048343 -A------TTATGGGATGAACTTTGATTTTAAGGAGAATAAGGCAACGAAAAGATTTCCATGCAT
387 TATCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCA-
* *
1048401 AATAAAATCATCAATATCATTTATCCTAATGAGGAGGACT-TGTTTATAGTGCCTAAT-ATAAAA
451 AA-AAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAA
* * ** * *
1048464 TGAATGAAGATCATTTGTAGAGTCCA--TTTGTCGAATTTGAGGCAAGAATTTAGACTTTACAAA
514 TGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAA
* ** * * * * *
1048527 AACTGTTGGGAAGAAAGCCACTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAG
579 AACTGGTGGGAAGAAAGCCTTTATTGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAG
* * * * *
1048592 ACTTTGTTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTTAGGTTTGTCTT
644 ACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCACGTTTATCTT
* * * *
1048656 ATTTAAGAGACAAACATTGATTCCATCAAAAACGGTGCCAAAAAAAAAGC-TTTCTTGCAACACC
708 ATTTAAGAGGCAAAC-TTGATTCTATCAAAAACGGTG--GAAAAAAAAGCATTTCTTGCGACACC
* * * *
1048720 AAAGCTTCAATGTCATGTA-ACCTAATGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAA-AT-
770 AAAGCATCAATGTCATGTATA-CTAATGAAGGGTATGTGTTTTAGGTTCCCAATCTTAAAAGATG
* * * * * * * *
1048782 --A-A-T--G-G-AGCCTG-TT-ATGA-TTATGGGATGAACTTTGATTTTAAGGAGAATAAGGCA
834 AGACATTACGAGAATCATGCTTGCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAAGGCA
* * *
1048836 AAGGAAAGATTTCCACGCAAAAAAAATCTTCAATATCATTT
899 AAGAAAAGATTTCCATGCAAAAAAAATCATCAATATCATTT
* *
1048877 ATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * * * *
1048942 CCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAACTGGTGGAAAGAAAGCCTTTA
66 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-
* * * * * *
1049007 C-CGCGAAACCAAAGTATCAATATCATGT-TCCCTTTTGAGAAGACTATGTTTTTGGTGCCTAAT
130 CTTGCGAAACCAAAGCATCAATATCGTGTAT-CCTTATGAGAAGACTTTGTTTATGGTGCCTAAT
* * * *
1049070 C-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGGCGAACTTTGAT
194 CTC-GAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGAT
* * * **
1049134 TCTATCGAGAACGGTGGAAAGAAAAGCATTTCATGTGACACCAAAGCATCAATGTCATGTATA-C
258 TCTATCAAAAACGGTGGAAA-AAAAGC-TTTCTTGCAACACCAAAGCATCAATGTCATGTA-ACC
* * * ** * * * * * *
1049198 TAATGATGGGTATGCGTTTTCGGTTCCCAA-ACCTGAAAAGACTAGAGACTATTACGAGAATCGA
320 TAATGAAGGGAATGTGTTTAAGGTTCCCAATA-CTAAAAATAATGGAGACTGTTATGAGAATCGA
* * * * * * * ** *
1049262 TGCTT-GCTTATTTAAGGGGTGAACATTGATTTTATGGAAAATAGGGTGAAGAAAAGATTTC
384 TG-TTATCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTC
1049323 AATGTGAAAG
Statistics
Matches: 2022, Mismatches: 228, Indels: 124
0.85 0.10 0.05
Matches are distributed among these distances:
908 3 0.00
909 52 0.03
910 82 0.04
911 72 0.04
912 175 0.09
913 3 0.00
914 2 0.00
915 1 0.00
916 1 0.00
918 1 0.00
919 2 0.00
921 4 0.00
925 1 0.00
926 3 0.00
927 224 0.11
928 60 0.03
929 82 0.04
930 47 0.02
931 3 0.00
933 1 0.00
936 3 0.00
938 1 0.00
943 190 0.09
945 65 0.03
946 526 0.26
947 9 0.00
950 119 0.06
951 287 0.14
952 3 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (939 bp):
ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
CGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCT
ATCAAAAACGGTGGAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGA
AGGGAATGTGTTTAAGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATGTTATC
TTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAAAA
ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
AGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAACTGGT
GGGAAGAAAGCCTTTATTGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGACTATGT
TTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCACGTTTATCTTATTTAAGA
GGCAAACTTGATTCTATCAAAAACGGTGGAAAAAAAAGCATTTCTTGCGACACCAAAGCATCAAT
GTCATGTATACTAATGAAGGGTATGTGTTTTAGGTTCCCAATCTTAAAAGATGAGACATTACGAG
AATCATGCTTGCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAAGGCAAAGAAAAGATTT
CCATGCAAAAAAAATCATCAATATCATTT
Found at i:1048754 original size:455 final size:457
Alignment explanation
Indices: 1046071--1049236 Score: 3519
Period size: 455 Copynumber: 6.8 Consensus size: 457
1046061 CGAGCTTTCA
* ** * *
1046071 ATCCTAATGAGGAGGACCTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATCAATAGAGT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * * * *
1046136 CCATGTTAGTCTCATTTGAGGTACGAACTTAGACTTTAAAAAAACTAGTGGGAAGAAAGCCATTC
66 CCA-GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
*
1046201 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGCGAAGACTTTGTTTATGGTGCCTAATCT
130 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
* * * * *
1046266 CAAAAAGAATGGGGATTAGTATTAGTATTCATGTTTGTCTTATTTAAGAGACAAACAGTGATTCT
195 CGAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATTCT
* * * * *
1046331 ATCAAAAACGATG-GAAAAAAAGCTTTCCTACAACACCAAAGCATCAATGTCATTGTAACCTAAC
260 ATCAAAAACGGTGAAAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCA-TGTAACCTAAT
* *
1046395 GAAGGGAATGTGTTTAAGGTTCCTAATCCTAAAAATAATGGAGACTGTTATGAGAATCAATGCTT
324 GAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTGTT-T--G-----A----T
* * * * **
1046460 GTCTTCTTTATGGGATGAACTTTGATTTTATGCAAAATAAGGCAAAGGAAAGATTTCCACACAAA
377 G----ATTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGC--A
*
1046525 AAAAAAATCATCAATATCATTT
436 AATAAAATCATCAATATCATTT
* * *
1046547 ATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATTATTAGTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * * * *
1046612 CCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTATAAAAACTGGTGGAAAAAAAGCCTTTA
66 CCA-GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-
* * * * *
1046677 C-TGCGAAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGACTATGTTTATGGTGCCTAATC
129 CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATC
* * * *
1046741 -CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGGCAAACTTTGATT
194 TC-GAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATT
* * * * **
1046805 CTATCGAGAACGGTGGAAAGAAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATA-CT
258 CTATCAAAAACGGTGAAAAAAAAAGC-TTTCTTGCAACACCAAAGCATCAATGTCATGTA-ACCT
* ** ** * ** *
1046869 AATGAAGGGTATGCATTTTCGGTTCCCAATCTTAAAAGGATTGGAGACCATTACAAGAATCGATG
321 AATGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAG--C----C-----T-G-T-
* * * * *
1046934 CTTGTCTTATTTAAGAGG-TAAACTTTGATTTTATGGAAAA-AAGGCAAAGAAAAGATTTCCATG
372 -TTG-ATGATTTATG-GGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATG
* * *
1046997 CAAAAGAAAATAATCCATATCATTT
434 C-AAATAAAATCATCAATATCATTT
* * * *
1047022 ATCCTAAGGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGATGATCGTTACTAGAGT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * *
1047087 CCATGTTTATCTCATTTGAGGCACGAACTTAGACTTTATAAAAACTGGTGGGAAGAAAGCCATTC
66 CCA-GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
*
1047152 TTGTGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
130 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
*
1047217 CGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAGAGACAAACATTGATTCT
195 CGAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATTCT
* * * * *
1047282 ATCAAAAATGGTG-GAAAAAATGCTTTCTTGCAACATCAAAGCCTCAATGTCATGTAACCTAATG
260 ATCAAAAACGGTGAAAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATG
* *
1047346 AAGGGAATGTGCTTT-AGGTTCCCAATACTAAAAATAATGGAGACTGTTATGAGAATCGATGTTT
325 AAGGGAATGTG-TTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTG-T-T-----T-GATG---
* * * * **
1047410 ATCTTCTTTATAGGATAAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAGGATTTCTGTGC-AA
378 A-----TTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAA
*
1047474 -AAAATCATCAATCTCATTT
438 TAAAATCATCAATATCATTT
* *
1047493 ATCCTAATGAGGAGAATGTGTTTATTGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGACT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * * * *
1047558 CCATGTTTGTCTCATTTGAGTCACGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGGCTTTA
66 CCA-GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
* * * * * *
1047623 TTGCGAAACCAAAGTATCAATATCTTGTACCCTTTTAAGAAGACTATGTTTATGGTGCCTAATC-
130 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
* * * * * *
1047687 CTAAAAAGAATGGGGATTAGTGTGACTATTCACGTTTATCTTATTTAAAAGGCAAAC-TTCGATT
195 C-GAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATT-GATT
* * * *
1047751 CTATCAAAAACGGTGGAAAAAAAAGCATTTCATGCGACACCAAATCATCAATGTCATGTATA-CT
258 CTATCAAAAACGGTGAAAAAAAAAGC-TTTCTTGCAACACCAAAGCATCAATGTCATGTA-ACCT
* * ** * * * *
1047815 AATGAAGGGTATTTGTTTTTGGTTCCCAAACTTGAAAAGACTAGAGACTATTACGAGAATCTATG
321 AATGAAGGGAATGTGTTTAAGGTTCCCAATCCT-AAAA-A-T----A--A-T--G-G-AGC-CTG
* * * * * * * * *
1047880 CTTGCTTATTTAAGGGGTGAACATTGATTTTATGGAAAATAGGGCAACGAAAAGATTTCCATGCA
371 TTTGATGATTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA
1047945 TAATAAAATCATCAATATCATTT
436 -AATAAAATCATCAATATCATTT
* * *
1047968 ATCCTAATGAGGAGGACT-TGTTTATAGTGCCTAAT-ATAAAATGAATGAAGATCATTTGTAGAG
1 ATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAG
** * * *
1048031 TCCA-TTTGTCGAATTTGAGGCAAGAATTTAGACTTTACAAAAACTGTTGGGAAGAAAGCCACTC
65 TCCAGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
1048095 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
130 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
* * *
1048160 CGAAAAGAATGGGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACATTGATTCC
195 CGAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATTCT
*
1048225 ATCAAAAACGGTGCCAAAAAAAAAGCTTTCTTGCAACACCAAAGCTTCAATGTCATGTAACCTAA
260 ATCAAAAACGGTG--AAAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAA
1048290 TGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTG-TT-ATGA-TTATGGGA
323 TGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTGTTTGATGATTTATGGGA
* *
1048352 TGAACTTTGATTTTAAGGAGAATAAGGCAACGAAAAGATTTCCATGCATAATAAAATCATCAATA
388 TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCA-AATAAAATCATCAATA
1048417 TCATTT
452 TCATTT
* * *
1048423 ATCCTAATGAGGAGGACT-TGTTTATAGTGCCTAAT-ATAAAATGAATGAAGATCATTTGTAGAG
1 ATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAG
** * * *
1048486 TCCA-TTTGTCGAATTTGAGGCAAGAATTTAGACTTTACAAAAACTGTTGGGAAGAAAGCCACTC
65 TCCAGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTC
1048550 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
130 TTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCT
* * *
1048615 CGAAAAGAATGGGGATTAGTATGAGTATTTAGGTTTGTCTTATTTAAGAGACAAACATTGATTCC
195 CGAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATTCT
*
1048680 ATCAAAAACGGTGCCAAAAAAAAAGCTTTCTTGCAACACCAAAGCTTCAATGTCATGTAACCTAA
260 ATCAAAAACGGTG--AAAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAA
1048745 TGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTG-TT-ATGA-TTATGGGA
323 TGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTGTTTGATGATTTATGGGA
* * * * *
1048807 TGAACTTTGATTTTAAGGAGAATAAGGCAAAGGAAAGATTTCCACGCAAAAAAAATCTTCAATAT
388 TGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAATAAAATCATCAATAT
1048872 CATTT
453 CATTT
* *
1048877 ATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAAT
1 ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
* * * *
1048942 CCATGTTTGTCTCATTTAAGGCATGAACTTAGACTTTACAAAAACTGGTGGAAAGAAAGCCTTTA
66 CCA-GTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATT-
* * * * * *
1049007 C-CGCGAAACCAAAGTATCAATATCATGT-TCCCTTTTGAGAAGACTATGTTTTTGGTGCCTAAT
129 CTTGCGAAACCAAAGCATCAATATCGTGTAT-CCTTATGAGAAGACTTTGTTTATGGTGCCTAAT
* * * * *
1049070 C-CTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGAGGCGAACTTTGAT
193 CTC-GAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGAT
* * * * * **
1049134 TCTATCGAGAACGGTGGAAAGAAAAGCATTTCATGTGACACCAAAGCATCAATGTCATGTATA-C
257 TCTATCAAAAACGGTGAAAAAAAAAGC-TTTCTTGCAACACCAAAGCATCAATGTCATGTA-ACC
* * * ** * *
1049198 TAATGATGGGTATGCGTTTTCGGTTCCCAAACCTGAAAA
320 TAATGAAGGGAATGTGTTTAAGGTTCCCAATCCTAAAAA
1049237 GACTAGAGAC
Statistics
Matches: 2337, Mismatches: 273, Indels: 180
0.84 0.10 0.06
Matches are distributed among these distances:
453 3 0.00
454 49 0.02
455 540 0.23
456 66 0.03
457 175 0.07
458 3 0.00
459 2 0.00
460 2 0.00
461 3 0.00
462 1 0.00
463 1 0.00
464 1 0.00
465 2 0.00
466 2 0.00
467 1 0.00
468 1 0.00
470 4 0.00
471 259 0.11
472 238 0.10
473 203 0.09
474 77 0.03
475 316 0.14
476 264 0.11
477 76 0.03
478 28 0.01
480 3 0.00
481 2 0.00
482 1 0.00
483 2 0.00
485 1 0.00
486 2 0.00
487 1 0.00
488 3 0.00
489 2 0.00
490 1 0.00
491 1 0.00
492 1 0.00
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (457 bp):
ATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAGT
CCAGTTTGTCTCATTTGAGGCAAGAACTTAGACTTTACAAAAACTGGTGGGAAGAAAGCCATTCT
TGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCTC
GAAAAGAATGGGGATTAGTATGAGTATTCAGGTTTATCTTATTTAAGAGACAAACATTGATTCTA
TCAAAAACGGTGAAAAAAAAAGCTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGA
AGGGAATGTGTTTAAGGTTCCCAATCCTAAAAATAATGGAGCCTGTTTGATGATTTATGGGATGA
ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTCCATGCAAATAAAATCATCAATATCAT
TT
Done.