Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold462
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1234098
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 7 of 8
Found at i:1050097 original size:13 final size:13
Alignment explanation
Indices: 1050079--1050104 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1050069 CAATTTTTTG
1050079 TGTATCGATACAT
1 TGTATCGATACAT
1050092 TGTATCGATACAT
1 TGTATCGATACAT
1050105 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1050997 original size:76 final size:76
Alignment explanation
Indices: 1050871--1051031 Score: 304
Period size: 76 Copynumber: 2.1 Consensus size: 76
1050861 CATAATTTTC
1050871 AAACGTGTATATTCGGGTATCATTTCATGATCTTACCATTATGTTCAAGCTCATGTTGCAATCAT
1 AAACGTGTATATTCGGGTATCATTTCATGATCTTACCATTATGTTCAAGCTCATGTTGCAATCAT
1050936 TCTCCTTTCTT
66 TCTCCTTTCTT
*
1050947 AAACGTGTATATTCGGGTATCATTTCATGATCTTACCATTATGTTCAAGCTCGTGTTGCAATCAT
1 AAACGTGTATATTCGGGTATCATTTCATGATCTTACCATTATGTTCAAGCTCATGTTGCAATCAT
1051012 TCTCCTTTCTT
66 TCTCCTTTCTT
*
1051023 AAACCTGTA
1 AAACGTGTA
1051032 ATCTGACTTC
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
76 83 1.00
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (76 bp):
AAACGTGTATATTCGGGTATCATTTCATGATCTTACCATTATGTTCAAGCTCATGTTGCAATCAT
TCTCCTTTCTT
Found at i:1051224 original size:21 final size:21
Alignment explanation
Indices: 1051183--1051226 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
1051173 CTCTCCTTTA
* *
1051183 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
1051204 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
1051225 TC
1 TC
1051227 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:1053050 original size:13 final size:13
Alignment explanation
Indices: 1053032--1053070 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1053022 ATAATCACCC
*
1053032 TGTATCGATACAT
1 TGTATCGATACAA
1053045 TGTATCGATACAA
1 TGTATCGATACAA
1053058 TGTATCGATACAA
1 TGTATCGATACAA
1053071 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.33
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1055168 original size:15 final size:15
Alignment explanation
Indices: 1055148--1055178 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1055138 ATTTCGTTTG
*
1055148 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1055163 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1055178 G
1 G
1055179 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1057011 original size:21 final size:21
Alignment explanation
Indices: 1056982--1057026 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1056972 AAGTTTTCAT
*
1056982 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1057002 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1057024 TTT
1 TTT
1057027 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1059263 original size:13 final size:13
Alignment explanation
Indices: 1059245--1059270 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1059235 CAATTTTTTG
1059245 TGTATCGATACAT
1 TGTATCGATACAT
1059258 TGTATCGATACAT
1 TGTATCGATACAT
1059271 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1060908 original size:158 final size:156
Alignment explanation
Indices: 1059821--1065221 Score: 893
Period size: 158 Copynumber: 34.2 Consensus size: 156
1059811 CTTTACTACA
* * * * **
1059821 AAACCATAGCA-CTAATATCATATATCCTAATGAAAAGACTATGTTTACAGTGCCTAATC-CTGA
1 AAACCAAAGCATC-AATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GA
* *
1059884 AAAGAATAGG-GATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT
64 AAAGAAT-GGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTAT
1059948 CAAAAACGGTGGAAGAAAAAGCTTTC--GTG
127 CAAAAACGGTGGAA-AAAAAGCTTTCTTGTG
** * * * * *
1059977 CAACACCAAAGCGCCAATGTCATGTAACCTAATGA-AGGGAATGTGTTT-TAGGCT-CCCAATC-
1 -AA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTAT-GG-TGCCTAATCT
* * * * * * * * * * *
1060038 CTAAAAATAATGGAGACT-GTTACGAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGATT
61 C-GAAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATT
* * * * * * *****
1060102 TTAATGAAAATA-AG-GCAAAGGAAAGATTTCCAACC
123 CT-ATCAAAA-ACGGTGGAAA-AAAAGCTTTCTTGTG
** * * * * * *
1060137 AAAAAAAATCATCAATATCATTTATCCTAATGAGGAGGACT-TATTTATAGTGCCTAATCAC-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTGTGTTTATGGTGCCTAATCTCGAA
* * * *
1060200 AATGAATGAAGATCATTAGTA-GA-ATCCATGTTTGTCTCATTTGAG-GCACGAAC-TTAGACTT
65 AA-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-TT
* * *
1060261 -TA-CAAAAACTGGCGGGAAGAAAGCCTTTAC-TGCT-
123 CTATCAAAAAC-GGTGGAAAAAAAG-CTTT-CTTG-TG
* * ** ** * * *
1060295 TAACCAAAGCATCAATATCATGTACCCTTTTGAGAAGACAATGATTATGATGCCTAAGC-CTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GAA
* * * * *
1060359 AAGAATGGGGATTAGTATGA-CTATCATGTTTATCTTATTT-TG-GA-G------GATTCTATCG
65 AAGAATGGAGATTAGTATGAGAT-TCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCA
1060414 AAAACGGTGGAAATAAAAGCATTTCTTGTG
129 AAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * * * * * * *
1060444 ACACCAAAGCATCGAA-GTCATGTATCCTAACGA-AGGGTA-TGCGTTT-CGGTTCCCAAACTTG
1 AAACCAAAGCATC-AATATCATGTATCCTAATGAGA-AG-ACTGTGTTTATGGTGCCTAATCTCG
* * * * * * * **
1060505 -AAAGACT-GAGGACT-GTTACGAGAATCGATGCTTGTCTTGTTTAAAAGGTGAA-AGTTTGATT
63 AAAAGAATGGA-GATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACA--TTGATT
* * * * * **
1060566 TTATGGAAAATA-GG-GAAAAGAAAAGATTTCCATGCA
123 CTAT-CAAAA-ACGGTGGAAA-AAAAGCTTT-CTTGTG
** * * * * * *
1060602 AAATAAAATCATCAATATCATTTATCCTAATGAGGAGGAC-GTGTTTATAGTACCTAATCGC-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTGTGTTTATGGTGCCTAATCTCGAA
* * * * *
1060665 AATGAATGAAGATCATTAGTA-GAG-TCCATGTTTGTCTCATTTGAG-GCATGAAC-TTAGACTT
65 AA-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-TT
* * **
1060726 -TA-CAAAAAATGGTGGGAAGGAAGCTATTCTTGTG
123 CTATC-AAAAACGGTGGAAAAAAAGCT-TTCTTGTG
* * * *
1060760 AAACCAAAGCATCGATATCATGTATCCTTATGAGTAGACTTTGTTTATGGTGCCTAATCTCGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* *
1060825 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAA
66 AGAATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCAA
*
1060890 AAACGGTGGAAAAAAAGCTTTCTTG-C
130 AAACGGTGGAAAAAAAGCTTTCTTGTG
* * * * * * *
1060916 AACACCAAAGCATCAATGTCATGTAACCTAATGA-AGGGAATGTGTTT-TAGGTTCCCAATC-CT
1 AA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTAT-GGTGCCTAATCTCG
* * * * * * * * * *
1060978 AAAAGTAATGGAGACT-GTTATAAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGATTTT
63 AAAAG-AATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCT
*** * ** * *
1061042 AAGGAAAA-TGTGGCAAAGGCAAGATTTC-TATG
125 ATCAAAAACGGTGG-AAA-AAAAGCTTTCTTGTG
* * * * * * * *
1061074 AAACAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCAC-AAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* * * *
1061138 ATGAATGAAGATCATTAGTA-GA-ATCCATGTTTGTCTCATTTGAG-GCACGAAC-TTAGACTT-
66 A-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-TTC
* **
1061198 TA-CAAAAACTGGT-GAGAAGAAAGCCTTTAC-TAAG
124 TATCAAAAAC-GGTGGA-AAAAAAG-CTTT-CTTGTG
* * * ** * *
1061232 AAACCAAAGTATCAATATCACGTACCCTTTTGAGAAGACTATGATTATGGTGCCTAATC-CTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GAA
* * * * * * * *
1061296 AAGAATGGGGATTAGTATGA-CTATCATGTTTATCTTATTTAAAAGGCAAACTTTTATTCTATCA
65 AAGAATGGAGATTAGTATGAGAT-TCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCA
*
1061360 AAAACGGTGGAAAGAAAAGCATTTCTAGTG
129 AAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * * * * ** * * * * *
1061390 ACACGAAAGCATCAATGTCGTGTATACTAACGA-AGGGTA-TGCATTT-TCAGTTCCCAAGCTTG
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTGTGTTTAT-GGTGCCTAATCTCG
* * * * * * * ** * *
1061452 AGAAGACTAGAGACT-GT-TGCGAGAATCGATGCTTG-CTTATTTAAGGGGTGAATATTGATTTT
63 AAAAGAATGGAGATTAGTAT--GAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCT
* * * * **
1061514 ATGGAAAATA-GG-GCAACGAAAAGATTTCCACGT-
125 AT-CAAAA-ACGGTGGAA-AAAAAGCTTT-CTTGTG
** * * * * * *
1061547 AATAGAAAATCATCAATATCATTTAT-CTAATGAGGAGGAC-GTGTTTATAGTCCCTAATCAC-A
1 AA-ACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTGTGTTTATGGTGCCTAATCTCGA
* * * * *
1061609 AAATGAATGTAGATCATTAGTA-GAG-TCCATATATGTCTAATTTAAG-GCACGAAC-TTAGACT
64 AAA-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-T
* * *
1061670 T-TA-CAAAAACTGGTGGGAAGAAAGCGATTCTTGTG
122 TCTATCAAAAAC-GGTGGAAAAAAAGC-TTTCTTGTG
* * * * **
1061705 AAACCAAAGCATCAATATCATGTATCCTTATGTGAAGACTTTGTTTATGGTGCCTAATCTTGAGT
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* *
1061770 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAA
66 AGAATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCAA
*
1061835 AAACGGTGGAAAAAAAAGCTTTCTTG-C
130 AAACGGTGG-AAAAAAAGCTTTCTTGTG
* * * * * *
1061862 AACACCAAAGCATCAATGTCATGTAACCTAATGA-AGGGAATGTGTTT-TAGGTTCCCAATC-CT
1 AA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTAT-GGTGCCTAATCTC-
* * * * * * * * * *
1061924 AAAAATAATGGAGACT-GTTATGAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGACTT-
62 GAAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGA-TTC
** * * * * * **
1061987 TAAGGAAAATA-AG-GCAAAGGAAAGATTTCCATGCAA
124 T-ATCAAAA-ACGGTGGAAA-AAAAGCTTT-CTTG-TG
** * * * * * * * *
1062023 AAAAAAAATCATCAATATCATTTATCCTGATGAAGAGGA-AGCAG-TTATAGTGCCTAATCAC-A
1 AAACCAAAGCATCAATATCATGTATCCTAATG-AGAAGACTG-TGTTTATGGTGCCTAATCTCGA
* * * * *
1062085 AAATGAATGAAGATCATTAGTA-GA-ATCCATGTTTGTCTCATTTGAG-GCATGAAC-TTAGACT
64 AAA-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-T
* **
1062146 T-TA-CAAAAACTGGTGGAAAGAAAGCCTTTAC-TACG
122 TCTATCAAAAAC-GGTGGAAAAAAAG-CTTT-CTTGTG
* * ** * * *
1062181 AAACCAAAGTATCAATATCATGTACCCTTTTGAGAAGACTATGGTTATGGTGCCTAATCTTGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* * * * * * * * *
1062246 AGAATGGGGATTGGTTTGACTATTCATTTTTGTGTTTTTTAAGAG-CCAAGCTTTGATTCTATCA
66 AGAATGGAGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACGAA-CATTGATTCTATCA
* *
1062310 AAAACGGGGGAAAGAAAAGCGTTTCTTGCG
129 AAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * * * ** * * *
1062340 ACACCAAAACATAAATGTCATGTATCTTAATGA-AGGGAAAGTGTTCTA-GGTTCCCAATC-CTA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTT-TATGGTGCCTAATCTC-G
* * * * * * ** *
1062402 AAAATAATGGAGACT-GTTATGAGAATCGATGTTTGTCTTATTTATGGGATGAATTTTGATTATA
63 AAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCTA
** * * **
1062466 AGAAAAA---TGGCAAAGAAAAGATTTCCATGCA
126 TCAAAAACGGTGG-AAA-AAAAGCTTT-CTTGTG
** * * * * * * * *
1062497 AAAGAAAATG-ATTAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTTCCTAATCAC-AA
1 AAACCAAA-GCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAA
* * * * * *
1062560 AATGAATGAAGATCATTACT-AGAATCCATGTTTGTCTCATTTGAAG-CACGAAC-TTAGACTT-
65 AA-GAATGGAGATTAGTA-TGAG-ATTCATGTTTGTCTTATTT-AAGAGACGAACATT-GA-TTC
* *
1062621 TA-CAAAAATTGGTGGGAAAAAAATCCTTTCTTGTG
124 TATCAAAAA-CGGT-GGAAAAAAA-GCTTTCTTGTG
* * * * * ** * *
1062656 AAACCATAGCACCAATATCATGTTTCTTAATGAAAAGACCATGTTTACGGTGCCTAATC-CTAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GAA
* * * * *
1062720 AAGAATAGG-GATTAGTACGAGTATTTATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATG
65 AAGAAT-GGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATC
* *
1062784 AAAGAA-AGTGGGAAAAAAAGCTTTCTTGCG
128 AAA-AACGGT-GGAAAAAAAGCTTTCTTGTG
** * * * ** * * * * * *
1062814 CCACTAAAGAATCAATGTTGTGTAACCTAATGA-AGGGAATGTGTTT-TAGGTTCCCAATC-CTA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTAT-GGTGCCTAATCTC-G
* * * * * * * * * * * * *
1062876 AAAATAATGGAGACTATTATGAGAATTGATGCTTATCTTTTTTATGGGATGAACTTTTATTTTAA
63 AAAAGAATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCT-A
* * * * * ** **
1062941 TGAAAATA-AG-GCAAAGGAAAGATTTCCAAGAA
126 TCAAAA-ACGGTGGAAA-AAAAGCTTT-CTTGTG
** * * * * * *** * * * *
1062973 AAAAAAAATCGTTAATATCATTTATCCTAATGAGGAGAAC-ACATTTGTAGTGCCTATTCAC-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAG-ACTGTGTTTATGGTGCCTAATCTCGAA
* * * * * ** * *
1063036 AATAAATGAAGATCATTAGTA-GA-ATCCATGTTTGTCTAATTTGAGCCAAGAA-GTTAGACTT-
65 AA-GAATG--GA-GATTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACGAACATT-GA-TTC
* * *
1063097 TA-CAAAAAACTGGTGGGAAGAAAGCCTTTAC-TATG
124 TATC-AAAAAC-GGTGGAAAAAAAG-CTTT-CTTGTG
** * ** * * *
1063132 AAACCAAAGCATCAATATTGTGTACCCTTTTGAGAAGGCTATGATTATGGTGCCTAATC-CTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GAA
* * * * * * * * *
1063196 AAGAATGGGGATTAGTATGA-CTATCTTGTCTATGTTATTTAAGAGGCAAACTTTGATTCTATCA
65 AAGAATGGAGATTAGTATGAGAT-TCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCA
1063260 AAAACGGTGGAAAGAAAAGCATTTCTTGTG
129 AAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * * * *
1063290 ACACCAAAGCATCAA-AGTCATGTATCCTAATGAG-GGTA-TGCGTTT-TCGGTTCCCAAACTTG
1 AAACCAAAGCATCAATA-TCATGTATCCTAATGAGAAG-ACTGTGTTTAT-GGTGCCTAATCTCG
* * ** * * * * ** * *
1063351 -AAAGACTGGAGACT-GTTAAAAGAATCGATGCTTATCTTATTTAAAAGGTGAACTTTGATTTTA
63 AAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCTA
* * * * **
1063414 TGGAAAATA-GG-GCAAAGAAAAGATTTCCATGCA
126 T-CAAAA-ACGGTGGAAA-AAAAGCTTT-CTTGTG
** * * * * *
1063447 AAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGA-TGTGTTTATAGTGCCTAATCGC-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTGTGTTTATGGTGCCTAATCTCGAA
* * * * *
1063510 AATGAATGAAGATTATTA-GTAGAGTCCATGTTTGTCTCATTTGAG-GCACGAAC-TTAGACTT-
65 AA-GAATGGAGATTAGTATG-AGA-TTCATGTTTGTCTTATTTAAGAG-ACGAACATT-GA-TTC
* * * *
1063571 TA-CAAAAACTGGTGGGAAGAAAGCCATTCTTGCG
124 TATCAAAAAC-GGTGGAAAAAAAG-CTTTCTTGTG
* *
1063605 AAACCAAAGCATCAATATCATGTATCCTTATGAGAAGACTTTGTTTATGGTGCCTAATCTCGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* *
1063670 AGAATGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACATTGATTCTATCAA
66 AGAATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCAA
* * * *
1063735 AAATGGTGGAAAAAAAGTTTTCTAG-C
130 AAACGGTGGAAAAAAAGCTTTCTTGTG
* * * * * * *
1063761 AACATCAAAGCATCAATGTCATGTAACCTAATGA-AGGGAATGTGTTT-TAGGTTCCCAATC-CT
1 AA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTAT-GGTGCCTAATCTC-
* * * * * * * * * *
1063823 AAAAATAATGGAGATT-GTTATGAGAATCAATGCTTGTCTTCTTTATGGGATGAACTTTGATTTT
62 GAAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCT
** * * * * ***
1063887 AAGGAAAATA-GG-GCAAAGGAAAGATTTCCATCCA
125 -ATCAAAA-ACGGTGGAAA-AAAAGCTTT-CTTGTG
** *** * * * * * *
1063921 AAAAAAAATTGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCAC-AAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* * * * * * * *
1063985 ATCAATGAAAATTATTA-GTAGAATCCATGTTTGTCTCATTTGAG-GCACGAAC-TAAGACTT-T
66 A-GAATGGAGATTAGTATG-AG-ATTCATGTTTGTCTTATTTAAGAG-ACGAACAT-TGA-TTCT
* * * **
1064046 A-AAAAAACTGGTGGGAAGAAAGCCTTTAC-TACG
125 ATCAAAAAC-GGTGGAAAAAAAG-CTTT-CTTGTG
* **
1064079 AAACCAAAGTC-TCAATAACATGTATCCTTTTGAGAAGACTGTGTTTATGGTGCCTAATC-CTGA
1 AAACCAAAG-CATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTC-GA
* * * * * * *
1064142 AAAGAATGGGGATTAGTATGACTATTCATGTTTATCTTATTTAAGGGGCAAACTTTGATTCTATC
64 AAAGAATGGAGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATC
* * *
1064207 GAAAACGGTGGAAAGAAAAGCATTTCTCG-C
128 AAAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * ** * * * * *
1064237 AACACCAAAGCATCAATGTCTTGTATACTAATGA-AGGGTA-TGCATTT-TCAGTTCCCAAGCTT
1 AA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTGTGTTTAT-GGTGCCTAATCTC
* * ** ** * * * ** *
1064299 GAAAAGACTAGAGGCT-GTTACAAGAATCGATGCTTG-CTTATTTAAGGGGTGAACATTGATTTT
62 GAAAAGAATGGAGATTAG-TATGAGATTC-ATGTTTGTCTTATTTAAGAGACGAACATTGATTCT
* * * * *** *
1064362 ATGGAAAATA-GG-GCAAGGAAAAGATTTCCACATA
125 AT-CAAAA-ACGGTGGAA-AAAAAGCTTT-CTTGTG
** * * * * *
1064396 AAAGAAAATCATCAATATCATTTATCCTAATGATGAGGA-TGTGTTTATAGTGCCTAATCAC-AA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA-GAAGACTGTGTTTATGGTGCCTAATCTCGAA
* * * * * * * * **
1064459 AATGAAAGAAGATCATTACT-AGAATCCATATTTG-CATCATTTATG-GCACGAAC-TT-AAAC-
65 AA-GAATGGAGATTAGTA-TGAG-ATTCATGTTTGTC-TTATTTAAGAG-ACGAACATTGATTCT
** **
1064518 ATTACAAAAATTAGTGGGAAAAAATCCTTTCTTGTG
125 A-T-CAAAAA-CGGT-GGAAAAAAAGCTTTCTTGTG
* * * * * * * *
1064554 AAACCATAGCACCAATATCGTGTATCCTAGTGAAAAGACTATGTTTTACGGTGCCTAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTG-TTTATGGTGCCTAATCTCGAA
* * * ** *
1064619 AAGAATGGGGATTAGTATGAGTATTGATGTTTGTCTTATTTAAAAGATAAACTTTGATTCTATCA
65 AAGAATGGAGATTAGTATGAG-ATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCA
* * * *
1064684 AAAATGGGGGAAAGAAAACCTTTTCTTGCG
129 AAAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * * * * ** ** * * *
1064714 ACACCAAAGCATCAATGTCATGTATCATAATGA-AGGGAATGCCTTT-TTTTCCCCAATCTTGAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCTAATCTCGAA
* * * * * ** * *
1064777 AGGAATGGAGACTATTATGAGAATCGAT-TCTTTTCTTATTTAAGAGATAAACCTTGATTTTATG
65 AAGAATGGAGATTAGTATGAGATTC-ATGT-TTGTCTTATTTAAGAGACGAACATTGATTCTAT-
* * *
1064841 GAAAATA-GG-GCAAAGAAAAGATTT-TTGTG
127 CAAAA-ACGGTGGAAA-AAAAGCTTTCTTGTG
** * ** * * * * * * * *
1064870 CAAAAGAAAATCATCAATATCAT-TAATCCTAGGGAGGAGAATGTGTTTTTAGAGCTTAGTCAC-
1 --AAACCAAAGCATCAATATCATGT-ATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCG
* * * * * * * * * * ** *
1064933 AAAATGGATGAAGGTCAGTACT-ATAATCCTTTTTTGTCATATTTGAGTCACGAAC-TCAGACTT
63 AAAA-GAATGGAGATTAGTA-TGA-GATTCATGTTTGTCTTATTTAAGAGACGAACAT-TGA-TT
** * **
1064996 -TAT-AATAATTGGT-GAGAAGAAAGTCTTTCTTGCA
123 CTATCAA-AAACGGTGGA-AAAAAAG-CTTTCTTGTG
* * * * * * *
1065030 AAACCAAAGCATTAATATCGTGTATACTTATGAGAATACTATGTTTATGGTGCCTAATCCCGAAA
1 AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
* * * * * * * *
1065095 AGAATGGGGATTAGTATGACTATTCCTGTTTGTCCTATTTTAGAGGCAAACTTTGATTCTATCAA
66 AGAATGGAGATTAGTATGA-GATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCAA
* * *
1065160 AAACAGTGAAAAGAAAAGCATTTCTTGCG
130 AAACGGTGGAAA-AAAAGC-TTTCTTGTG
* * *
1065189 ACACCAAAGCATCAATGTCATGTATACTAATGA
1 AAACCAAAGCATCAATATCATGTATCCTAATGA
1065222 AGGGTATGCG
Statistics
Matches: 3683, Mismatches: 1138, Indels: 844
0.65 0.20 0.15
Matches are distributed among these distances:
146 2 0.00
147 17 0.00
148 34 0.01
149 42 0.01
150 4 0.00
151 1 0.00
154 1 0.00
155 37 0.01
156 126 0.03
157 695 0.19
158 1595 0.43
159 848 0.23
160 224 0.06
161 30 0.01
162 15 0.00
163 10 0.00
164 2 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (156 bp):
AAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCTCGAAA
AGAATGGAGATTAGTATGAGATTCATGTTTGTCTTATTTAAGAGACGAACATTGATTCTATCAAA
AACGGTGGAAAAAAAGCTTTCTTGTG
Found at i:1065253 original size:476 final size:477
Alignment explanation
Indices: 1059659--1065269 Score: 6695
Period size: 474 Copynumber: 11.8 Consensus size: 477
1059649 TCCTAACACA
* * ****
1059659 ATGC-AAAGAAAATCATCAATATCGTTTATCCTAATGAGGAGGACACATTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * *
1059723 CAAAATGAATGAAGATCATTAGTAGAATCCCTGTTTGTCTCATTTGAGGTACGAACTTAAACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * *
1059788 ACAAAAACTGGTGGGAAGAAAGCCTTTAC-TACAAAACCATAGCA-CTAATATCATATATCCTAA
131 ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATC-AATATCATGTATCCTTA
* ** * *
1059851 TGAAAAGACTATGTTTACAGTGCCTAATCCTGAAAAGAATAGGGATTAGTATGAGTATTCATGTT
195 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* *
1059916 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGG-AAGAAAAAGC-TTTCGTGCA
260 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG-AAAAGCATTTCTTGCG
** * *
1059979 ACACCAAAGCGCCAATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTAGGCTCCCAATCCTAAA
324 ACACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAA
* * *
1060043 AATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAT-
388 AAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT-ATG
* *
1060107 GAAAATAAGGCAAAGGAAAGATTTCC
452 GAAAATAGGGCAAAGAAAAGATTTCC
** * *
1060133 AACCAAAA-AAAATCATCAATATCATTTATCCTAATGAGGAGGACT-TATTTATAGTGCCTAATC
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATGTGTTTATAGTGCCTAATC
1060196 ACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
65 ACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTT
* ** * *
1060261 TACAAAAACTGGCGGGAAGAAAGCCTTTAC-TGCTTAACCAAAGCATCAATATCATGTACCCTTT
130 TACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* * * *
1060325 TGAGAAGACAATGATTATGATGCCTAAGCCTGAAAAGAATGGGGATTAGTATGACTA-TCATGTT
195 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * * *
1060389 TATCTTATTT-TG-G----A---GGATTCTATCGAAAACGGTGGAAATAAAAGCATTTCTTGTGA
260 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGA
* * * * * **
1060445 CACCAAAGCATCGAA-GTCATGTATCCTAACGAAGGGTATGCG-TTTCGGTTCCCAA-ACTTGAA
325 CACCAAAGCATC-AATGTCATGTATACTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAA
* * * ** *
1060507 AGACT-GAGGACTGTTACGAGAATCGATGCTTGTCTTGTTTAAAAGG-TGAAAGTTTGATTTTAT
389 AGAATGGA-GACTGTTATGAGAATCGATGCTTGTCTTATTT-ATGGGATG-AACTTTGATTTTAT
*
1060570 GGAAAATAGGGAAAAGAAAAGATTTCC
451 GGAAAATAGGGCAAAGAAAAGATTTCC
* * * * *
1060597 ATGCAAAATAAAATCATCAATATCATTTATCCTAATGAGGAGGACGTGTTTATAGTACCTAATCG
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
1060662 CAAAATGAATGAAGATCATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
1060727 ACAAAAAATGGTGGGAAGGAAG-CTATT-CTTGTGAAACCAAAGCATCGATATCATGTATCCTTA
131 ACAAAAACTGGTGGGAAGAAAGCCT-TTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* * *
1060790 TGAGTAGACTTTGTTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGT
195 TGAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGT
* *
1060854 TTGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAA-AAAAGC-TTTCTTGCA
259 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCG
*
1060917 ACACCAAAGCATCAATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCT-AA
324 ACACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAA
* * *
1060980 AAGTAATGGAGACTGTTATAAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAG
388 AAG-AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATG
** *
1061045 GAAAAT-GTGGCAAAGGCAAGATTTCT
452 GAAAATAG-GGCAAAGAAAAGATTTCC
* *
1061071 ATG--AAACAAAATCATCAATATCATTTATCATAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
1061134 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* ** * * * *
1061199 ACAAAAACTGGTGAGAAGAAAGCCTTTAC-TAAGAAACCAAAGTATCAATATCACGTACCCTTTT
131 ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
*
1061263 GAGAAGACTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TCATGTTT
196 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
* * * * * *
1061327 ATCTTATTTAAAAGGCAAACTTTTATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTAGTGAC
261 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGAC
* * * * * * * * *
1061392 ACGAAAGCATCAATGTCGTGTATACTAACGAAGGGTATGCATTTTCA-GTTCCCAAGCTTGAGAA
326 ACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGCGTTTT-AGGTTCCCAATCCTAAAAA
* * ** * *
1061456 GACTAGAGACTGTTGCGAGAATCGATGCTTG-CTTATTTAAGGGGTGAA-TATTGATTTTATGGA
390 GAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACT-TTGATTTTATGGA
*
1061519 AAATAGGGCAACGAAAAGATTTCC
454 AAATAGGGCAAAGAAAAGATTTCC
* * * * * *
1061543 ACGTAATAGAAAATCATCAATATCATTTAT-CTAATGAGGAGGACGTGTTTATAGTCCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * *
1061607 CAAAATGAATGTAGATCATTAGTAGAGTCCATATATGTCTAATTTAAGGCACGAACTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
** *
1061672 ACAAAAACTGGTGGGAAGAAAGCGATT-CTTGTGAAACCAAAGCATCAATATCATGTATCCTTAT
131 ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
* * * ** *
1061736 GTGAAGACTTTGTTTATGGTGCCTAATCTTGAGTAGAATGGGGATTAGTATGAGTATTCATGTTT
196 GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
* * *
1061801 GTCTTATTTAAGAGACAAACATTGATTCTATCAAAAACGGTGGAAAAAAAAGC-TTTCTTGCAAC
261 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGAC
*
1061865 ACCAAAGCATCAATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAAA
326 ACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAAA
* * * *
1061929 TAATGGAGACTGTTATGAGAATCGATGCTTGTCTTCTTTATGGGATGAACTTTGACTTTAAGGAA
390 GAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAA
* *
1061994 AATAAGGCAAAGGAAAGATTTCC
455 AATAGGGCAAAGAAAAGATTTCC
* * * *
1062017 ATGCAAAAAAAAAATCATCAATATCATTTATCCTGATGAAGAGGAA-GCAG-TTATAGTGCCTAA
1 ATGC-AAAAGAAAATCATCAATATCATTTATCCTAATGAGGA-GAATG-TGTTTATAGTGCCTAA
*
1062080 TCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCATGAACTTAGAC
63 TCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAC
* * * *
1062145 TTTACAAAAACTGGTGGAAAGAAAGCCTTTAC-TACGAAACCAAAGTATCAATATCATGTACCCT
128 TTTACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCT
* * * * * *
1062209 TTTGAGAAGACTATGGTTATGGTGCCTAATCTTGAAAAGAATGGGGATTGGTTTGACTATTCATT
193 TATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATG
* * * * * *
1062274 TTTGTGTTTTTTAAGAGCCAAGCTTTGATTCTATCAAAAACGGGGGAAAGAAAAGCGTTTCTTGC
258 TTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGC
* * * * *
1062339 GACACCAAAACATAAATGTCATGTAT-CTTAATGAAGGGAAAGTGTTCTAGGTTCCCAATCCTAA
323 GACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAA
* * * * *
1062403 AAATAATGGAGACTGTTATGAGAATCGATGTTTGTCTTATTTATGGGATGAATTTTGATTATA-A
387 AAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATG
*
1062467 GAAAA-ATGGCAAAGAAAAGATTTCC
452 GAAAATAGGGCAAAGAAAAGATTTCC
* * * *
1062492 ATGCAAAAGAAAATGATTAATATCATTTATCCTAATGAGGAGAATGCGTTTATAGTTCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
1062557 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * * *
1062622 ACAAAAATTGGTGGGAAAAAAATCCTTT-CTTGTGAAACCATAGCACCAATATCATGT-TTCTTA
131 ACAAAAACTGGTGGG-AAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTT-
* * * * * * * *
1062685 ATGAAAAGACCATGTTTACGGTGCCTAATCCTAAAAAGAATAGGGATTAGTACGAGTATTTATGT
194 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGT
* *
1062750 TTGTCTTATTTAAGAGACAAACTTTGATTCTATGAAAGAA-AGTGGGAAA-AAAAGC-TTTCTTG
259 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAA-AACGGT-GGAAAGAAAAGCATTTCTTG
* * * ** *
1062812 CGCCACTAAAGAATCAATGTTGTGTA-ACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTA
322 CGACACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTA
* * * * * *
1062876 AAAATAATGGAGACTATTATGAGAATTGATGCTTATCTTTTTTATGGGATGAACTTTTATTTTAA
386 AAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTT-A
* *
1062941 T-GAAAATAAGGCAAAGGAAAGATTTCC
450 TGGAAAATAGGGCAAAGAAAAGATTTCC
* * * * * **** * *
1062968 AAGAAAAAAAAAATCGTTAATATCATTTATCCTAATGAGGAGAACACATTTGTAGTGCCTATTCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
1063033 CAAAATAAATGAAGATCATTAGTAGAATCCATGTTTGTCTAATTTGAGCCAAGAAGTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
** *
1063098 ACAAAAAACTGGTGGGAAGAAAGCCTTTACTAT--GAAACCAAAGCATCAATATTGTGTACCCTT
131 AC-AAAAACTGGTGGGAAGAAAGCCTTTACT-TGCGAAACCAAAGCATCAATATCATGTATCCTT
* * * *
1063161 TTGAGAAGGCTATGATTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTA-TCTTGT
194 ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGT
* * * * *
1063225 CTATGTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGTG
259 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCG
* * * * * **
1063290 ACACCAAAGCATCAAAGTCATGTATCCTAATG-AGGGTATGCGTTTTCGGTTCCCAA-ACTTGAA
324 ACACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAA
* ** * **
1063353 AGACTGGAGACTGTTAAAAGAATCGATGCTTATCTTATTTAAAAGG-TGAACTTTGATTTTATGG
389 AGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTT-ATGGGATGAACTTTGATTTTATGG
1063417 AAAATAGGGCAAAGAAAAGATTTCC
453 AAAATAGGGCAAAGAAAAGATTTCC
* *
1063442 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGGATGTGTTTATAGTGCCTAATCG
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* *
1063507 CAAAATGAATGAAGATTATTAGTAGAGTCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
*
1063572 ACAAAAACTGGTGGGAAGAAAGCCATT-CTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
131 ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
* *
1063636 GAGAAGACTTTGTTTATGGTGCCTAAT-CTCGAAAAGAATGGGGATTAGTATGAGTATTCATGTT
196 GAGAAGACTATGTTTATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * *
1063700 TGTCTTATTTAAGAGACAAACATTGATTCTATCAAAAATGGTGGAAA-AAAAG-TTTTCTAGCAA
260 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGA
* *
1063763 CATCAAAGCATCAATGTCATGTA-ACCTAATGAAGGGAATGTGTTTTAGGTTCCCAATCCTAAAA
325 CACCAAAGCATCAATGTCATGTATA-CTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAA
* * * * *
1063827 ATAATGGAGATTGTTATGAGAATCAATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAGGA
389 AGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGA
*
1063892 AAATAGGGCAAAGGAAAGATTTCC
454 AAATAGGGCAAAGAAAAGATTTCC
* * ** *
1063916 ATCCAAAAAAAAATTGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * *
1063981 CAAAATCAATGAAAATTATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTAAGACTTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * *
1064046 AAAAAAACTGGTGGGAAGAAAGCCTTTAC-TACGAAACCAAAGTC-TCAATAACATGTATCCTTT
131 ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAG-CATCAATATCATGTATCCTTA
*
1064109 TGAGAAGACTGTGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
195 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * * *
1064174 TATCTTATTTAAGGGGCAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTCGCAA
260 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGA
* * * * * *
1064239 CACCAAAGCATCAATGTCTTGTATACTAATGAAGGGTATGCATTTTCA-GTTCCCAAGCTTGAAA
325 CACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGCGTTTT-AGGTTCCCAATCCTAAAA
* * * ** * * *
1064303 AGACTAGAGGCTGTTACAAGAATCGATGCTTG-CTTATTTAAGGGGTGAACATTGATTTTATGGA
389 AGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGA
*
1064367 AAATAGGGCAAGGAAAAGATTTCC
454 AAATAGGGCAAAGAAAAGATTTCC
*** * *
1064391 ACATAAAAGAAAATCATCAATATCATTTATCCTAATGATGAGGATGTGTTTATAGTGCCTAATCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * *
1064456 CAAAATGAAAGAAGATCATTACTAGAATCCATATTTG-CATCATTT-ATGGCACGAACTTAAACA
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTC-TCATTTGA-GGCACGAACTTAGACT
* * * * * * * *
1064519 TTACAAAAATTAGTGGGAAAAAATCCTTT-CTTGTGAAACCATAGCACCAATATCGTGTATCC-T
129 TTACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTT
* * * * *
1064582 AGTGAAAAGACTATGTTTTACGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTGAT
194 A-TGAGAAGACTATG-TTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCAT
* * * * * *
1064647 GTTTGTCTTATTTAAAAGATAAACTTTGATTCTATCAAAAATGGGGGAAAGAAAACCTTTTCTTG
257 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTG
* * *
1064712 CGACACCAAAGCATCAATGTCATGTAT-CATAATGAAGGGAATGCCTTTT--TTTCCCCAATCTT
322 CGACACCAAAGCATCAATGTCATGTATAC-TAATGAAGGGAATGCGTTTTAGGTT-CCCAATCCT
* * * * * * * * *
1064774 GAAAGGAATGGAGACTATTATGAGAATCGATTCTTTTCTTATTTAAGAGATAAACCTTGATTTTA
385 AAAAAGAATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTA
**
1064839 TGGAAAATAGGGCAAAGAAAAGATTTTT
450 TGGAAAATAGGGCAAAGAAAAGATTTCC
* * ** * * * *
1064867 GTGCAAAAGAAAATCATCAATATCATTAATCCTAGGGAGGAGAATGTGTTTTTAGAGCTTAGTCA
1 ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
* * * * * * * * *
1064932 CAAAATGGATGAAGGTCAGTACTATAATCCTTTTTTGTCAT-ATTTGAGTCACGAACTCAGACTT
66 CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTC-TCATTTGAGGCACGAACTTAGACTT
* * * * * * * * *
1064996 TATAATAATTGGTGAGAAGAAAGTCTTT-CTTGCAAAACCAAAGCATTAATATCGTGTATACTTA
130 TACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTA
* * *
1065060 TGAGAATACTATGTTTATGGTGCCTAATCCCGAAAAGAATGGGGATTAGTATGACTATTCCTGTT
195 TGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTT
* * * * *
1065125 TGTCCTATTTTAGAGGCAAACTTTGATTCTATCAAAAACAGTGAAAAGAAAAGCATTTCTTGCGA
260 TGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGA
* ** * * * *
1065190 CACCAAAGCATCAATGTCATGTATACTAATGAAGGGTATGCGTTTTTTGTTCCTAAACTTGAAAA
325 CACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAAA
*
1065255 GACTGGAGACTGTTA
390 GAATGGAGACTGTTA
1065270 CTGATGAAAA
Statistics
Matches: 4377, Mismatches: 648, Indels: 222
0.83 0.12 0.04
Matches are distributed among these distances:
462 2 0.00
463 42 0.01
464 85 0.02
465 248 0.06
466 18 0.00
467 2 0.00
468 1 0.00
471 52 0.01
472 312 0.07
473 556 0.13
474 1245 0.28
475 706 0.16
476 954 0.22
477 153 0.03
478 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (477 bp):
ATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA
CAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
ACAAAAACTGGTGGGAAGAAAGCCTTTACTTGCGAAACCAAAGCATCAATATCATGTATCCTTAT
GAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTT
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGAC
ACCAAAGCATCAATGTCATGTATACTAATGAAGGGAATGCGTTTTAGGTTCCCAATCCTAAAAAG
AATGGAGACTGTTATGAGAATCGATGCTTGTCTTATTTATGGGATGAACTTTGATTTTATGGAAA
ATAGGGCAAAGAAAAGATTTCC
Found at i:1066922 original size:12 final size:11
Alignment explanation
Indices: 1066900--1066975 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1066890 AGAGAAAGAA
*
1066900 GAGAGAGGAGG
1 GAGATAGGAGG
1066911 GATGATAGGAGG
1 GA-GATAGGAGG
*
1066923 AGAGACAGGA--
1 -GAGATAGGAGG
*
1066933 GAGATAGTA--
1 GAGATAGGAGG
1066942 GAGATAGGAGG
1 GAGATAGGAGG
1066953 GATGATAGGAGG
1 GA-GATAGGAGG
*
1066965 AGAGACAGGAG
1 -GAGATAGGAG
1066976 AGATAATAGA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 4 0.08
12 30 0.57
13 4 0.08
ACGTcount: A:0.39, C:0.03, G:0.49, T:0.09
Consensus pattern (11 bp):
GAGATAGGAGG
Found at i:1066932 original size:24 final size:24
Alignment explanation
Indices: 1066899--1066984 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1066889 AAGAGAAAGA
*
1066899 AGAGAGAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
*
1066923 AGAGACAGGA--GA-GAT---AGT
1 AGAGACAGGAGGGATGATAGGAGG
*
1066941 AGAGATAGGAGGGATGATAGGAGG
1 AGAGACAGGAGGGATGATAGGAGG
* *
1066965 AGAGACAGGAGAGATAATAG
1 AGAGACAGGAGGGATGATAG
1066985 AGAGAGGAGG
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
18 11 0.22
20 2 0.04
21 6 0.12
22 2 0.04
24 28 0.57
ACGTcount: A:0.42, C:0.02, G:0.45, T:0.10
Consensus pattern (24 bp):
AGAGACAGGAGGGATGATAGGAGG
Found at i:1066951 original size:42 final size:42
Alignment explanation
Indices: 1066890--1067008 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1066880 TAGCCCTCAA
* *
1066890 AGAGAAAGAAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
*
1066932 AGAGATAGTAGAGATAGGAGGGATGATAGGAGGAGAGACAGG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
* * *
1066974 AGAGATAATAGAGAGAGGAGGGATGACAGAAGGAG
1 AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAG
1067009 GAGAGAAGAA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.44, C:0.03, G:0.45, T:0.08
Consensus pattern (42 bp):
AGAGATAGTAGAGAGAGGAGGGATGATAGGAGGAGAGACAGG
Found at i:1072541 original size:474 final size:475
Alignment explanation
Indices: 1071426--1073120 Score: 2153
Period size: 472 Copynumber: 3.6 Consensus size: 475
1071416 GTTGTCATCA
* * * *
1071426 GTTACGAGAATCGATTCTTGTCTTATTTAAGGGGTGAACATTGATTTTATGGAAAATAGGGCAAA
1 GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAA
* * * *
1071491 GAAAAGATTTCTACGCAAAAAAAAATCATCAATATCATTTATCCTAATAAGGAGGATGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* * *
1071556 GGTGCCTAATCACTAAATGAAAGAAGATCATTACTAGAATCCATGTTTG-CGTCATTTAAGGCAC
131 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTC-TCATTTAAGGCAC
*
1071620 GAACTTAGACTTTACAAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCTTCAATAT
195 GAACTTAGACTTTAC-AAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT
** **
1071685 CGTGTATTAGTTTTGAGAAGACTATGTTTATGGCACCTAATCCTGAAAAGAATGGGGATTAGTAT
259 CGTGTA-TCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTAT
** * * * * * * *
1071750 GACTATTCATGGTTGTTTTATTTAAGAGACAATCTTTGAATCAATCAAACACGCTGTAAAGAAAA
323 GACTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAA
* ** *
1071815 GCTTTTCTTATGACACCAAAGCATCAATGTCAGGTATCATAATGAA--GAAAGTGTTTTAGGTTC
388 GATTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATAATGAAGGGAAAGTG-TTTAGGTTC
** *
1071878 CCAATCCTGAAAATTTTGCAGACT
452 CCAATCCTGAAAATAATGGAGACT
* * * *
1071902 GTTGCGAGCATCGATGCTTGTCTTATTTAA---ATGAACATTGATTTTAAGGAAAATAAGGCAAA
1 GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAA
* * * *
1071964 GAAAAGATTTCCATCCGAAAGAAAAACATCAATATCATTTATCCTAATATGGAGAATGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* * **
1072029 AGTGCCCAATCACGAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGTGGCACG
131 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACG
* * * *
1072094 AACTTAAACTTTACAAAAATTGGTGGGAGGAAAGCCTTTCTTGCGAAACCAAAGCATCAGTATCG
196 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
* * * *
1072159 TGTATCCTTTTGAGAAAACTATGTTTGTGGTGCCTAATCCTGAAAAGAATGGGGATTAGTTTGGC
261 TGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
* * * * *
1072224 TCTTC-TCCTTTGTGTTATTTAAGAGCCAAACTTTGATTCTATCAAAAAC-AGGGGAAAGAAAA-
326 TATTCAT-ATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGA-TGGAAAGAAAAG
* *
1072286 ATGTTTCTTGCGACACCAAAGCATCAATGTCATGTATCTTAATGAAGGGAATGTGTTCTAGGTT-
389 AT-TTTCTTGCGACACCAAAGCATCAATGTCATGTATCATAATGAAGGGAAAGTGTT-TAGGTTC
*
1072350 CCAATCCTGAAAATAATGGAGGCT
452 CCAATCCTGAAAATAATGGAGACT
* ** * *
1072374 GTTATGAGAATCAATGCTTGTCTTATTTAAGGGATGAATTTTGATTATAAGGAGAA-AGGGCAAA
1 GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAA
* * *
1072438 GAAAAGATTTCCATGCGAAAGAAAATGATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* *
1072503 AGTTCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAATGG-AT
131 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAA-GGCAC
* **
1072567 GAACTTAGACTTTAC--AAATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGCATCAATATC
195 GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATC
** * * * * * *
1072630 GTACATCATTTTGAGAAGACTATGTTTATAGTGTCTAATCCTGAAAAAAATTGGCATTAGTATGA
260 GTGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGA
1072695 CTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGA
325 CTATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGA
* * * * ** *
1072760 ATTTCTTGCGACACTAAAGCATAAATGTCATGTATCCTAACAAAGGGTACACA-T-TTTCGGTTC
390 TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCATAATGAAGGG-A-A-AGTGTTTAGGTTC
* * ***
1072823 CCAAACTTGAAAAGGCTGGAGACT
452 CCAATCCTGAAAATAATGGAGACT
** * * * * * *
1072847 ACTACGGGAATCAATGGTTGTCTTATTTAAGGGGTGAACTTTAATTTTATGGAAAATAGGGCAAA
1 GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAA
*
1072912 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGCATGTGTTTAT
66 GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
* * * * *
1072977 TGTGCCAAATCCCAAAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACG
131 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACG
* * * *
1073042 AACTTAGACTTTACAAAAATTGGTGGGAAGAAACCCTTTGTTGCAAAAACAAAGCATCAATATCA
196 AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
* *
1073107 TGTATTCTTATGAG
261 TGTATCCTTTTGAG
1073121 TATTCATGTT
Statistics
Matches: 1054, Mismatches: 143, Indels: 44
0.85 0.12 0.04
Matches are distributed among these distances:
470 2 0.00
471 139 0.13
472 298 0.28
473 239 0.23
474 277 0.26
475 21 0.02
476 78 0.07
ACGTcount: A:0.36, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
GTTACGAGAATCAATGCTTGTCTTATTTAAGGGATGAACATTGATTTTAAGGAAAATAGGGCAAA
GAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTAT
AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACG
AACTTAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACCAAAGCATCAATATCG
TGTATCCTTTTGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGAC
TATTCATATTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGAT
TTTCTTGCGACACCAAAGCATCAATGTCATGTATCATAATGAAGGGAAAGTGTTTAGGTTCCCAA
TCCTGAAAATAATGGAGACT
Found at i:1074517 original size:476 final size:474
Alignment explanation
Indices: 1073115--1074982 Score: 2227
Period size: 476 Copynumber: 3.9 Consensus size: 474
1073105 CATGTATTCT
* * *
1073115 TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACCTTGATTCTATCAAAAACAGTGGAAAGA
1 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GTGGAAAGA
* * *
1073180 AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGG
65 AAAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAGG
* * * * * * * * ** **
1073245 TTCATAGTCTTGAAAAGAATGGAGATTGTTACGGGAAT-GTTGCTTGTCTAATTTAAGATACAAA
130 TTCCTAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
* * ** * * *
1073309 CTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCTTAAAAAAAAAAATCTTCATTATCAA
195 CTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC-A
* * * *
1073374 TTT-TCTTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-TTACTAG
259 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAAATCATTACTAG
* * * * * *
1073437 AATCCATGTTTGTTTCA-TTGAAGGCATGAACTTAGACTATACAAAAATTGGTGGGAGGAAAGCT
324 AATCCATGTTTGTCTCATTTG-AGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCC
* * * * * * *
1073501 TTTCTTGCGAAACCAAAGCATCAATATTGTTTATCCTTTTGAGAAGACTTTGATTATAGCGCCTA
388 TTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTA
*
1073566 ATCCTGAAAAGAATTGGGATTAG
453 AT-CTGAAAAGAATAGGGATTAG
* * *
1073589 TATAACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAGAGA
1 TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACG-TGGAAAGA
* * *
1073654 AAAGCTTTTCTTATG--ACACCAAAGCATCAATGTCAA-GTATCCTAATAAAAGGAATGTGTTTT
65 AAAGCTTTTC-TA-GCAACACCAAAGCATCAATGT-AATGTAACCTAATGAAGGGAATGTGTTTT
* * * * * * *
1073716 AGGTT-CTCAATCCTAAAAATAATTGAGACTGTTACAAGCATCAATGCTTGTCTTATTTAAGGGA
127 AGGTTCCT-AATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGA
* * * * **
1073780 TGAACATTGATTTT-TAGGAAAAATAGGGCAAAGAAAAGATTTCCACGTAAAAGAAAATCGTTGA
191 TGAACTTTGATTTTAT-GG-AAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAA
* * * * * *
1073844 TATCATTTATGCAAATGAGAAGAATGTGTTTCTAGTGCCAAATCACAAAATTAAAGAAAATCATT
254 TATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAAATCATT
* * *
1073909 ACTAGAATCCATGTTTGTCTCATTTGATGCGCGAACTTAGAATTTACAAAAATTGGTGGGAAGAA
319 ACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAA
* * * *
1073974 ACCCTTTCTTGCGAAAACAAAGCATCAATATTGTGTATCCTAATGAGAAGACTAAGTTTATGGTG
384 ACCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTG
* *
1074039 CCTAATCTAAAAAAGAGTAGGGATTAG
449 CCTAATCT-GAAAAGAATAGGGATTAG
*
1074066 TATGAGTATT-ATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAG
1 TATGACTATTCA-TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GTGGAAAG
* *
1074130 AAAAGCTTTTCTAGCAACAGCAAAGCATCAATGTAATGTAACCTAGTGAAGGGAATGTGTTTTAG
64 AAAAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAG
* ** *
1074195 GTTCCTAATCATGAAAATAATGGAGACTATTTTGAGAATCGATGCTTGTCTTATTTAAGGGGTGA
129 GTTCCTAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
1074260 ACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
194 ACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCA
* * * *
1074325 TTTATCCTAAGGTGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAG
259 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAAATCATTACTAG
* * * * * * * * **
1074390 AATCCTTGTATGACACATTTGAGTCACGAACTCAGATTTTACGAAAATTGGTGGGAAGAAAGTCT
324 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCCT
* * * * *
1074455 TTCTTGTGAAACCAAAGCATCAATATCGTGTATACTTATGAGAATAATATGTTTACGGTGCCTAA
389 TTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAA
*
1074520 TCTGGAAAAGAATGGGGATTAG
454 TCT-GAAAAGAATAGGGATTAG
* * * *
1074542 TATGACTATTC-TCGTTTGTCCTATTTCAGTGGCAAACTTTGATTCTATCAAAAACGGTGGAAAG
1 TATGACTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAC-GTGGAAAG
* ** * ** * * * ** *
1074606 AACAA-CATTTCTTCCGACACCAAAGCATCAAAATCATGTATCCTAATGAAGGGCATGCATTTTT
64 AA-AAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTA
* * ** * * *
1074670 GGTTCCCAAACTTGAAAAGT-GGGGGGACTATTATGAGAATCGATGCTTGTCTTATTTAAGGGGT
128 GGTTCCTAATCTTGAAAA-TAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * * *
1074734 GAACTTCGATTTTACGAAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATAT
192 GAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATAT
*
1074799 CATTTATCCTAATGCGAGG-G-ATGTGTTTATAGTGCCTAATCACAAAATTAAAGAAAATCATTA
257 CATTTATCCTAAT--GAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAAATCATTA
* * *
1074862 CTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTAGTGGAAAGAAA
320 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAA
1074927 CCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
385 CCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGT
1074983 GTGTGCTAAT
Statistics
Matches: 1187, Mismatches: 182, Indels: 48
0.84 0.13 0.03
Matches are distributed among these distances:
473 2 0.00
474 136 0.11
475 38 0.03
476 694 0.58
477 307 0.26
478 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (474 bp):
TATGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTGGAAAGAA
AAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAGGT
TCCTAATCTTGAAAATAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAAC
TTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATT
TATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAAGAAAATCATTACTAGAA
TCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAACCCTTT
CTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC
TGAAAAGAATAGGGATTAG
Found at i:1074964 original size:952 final size:951
Alignment explanation
Indices: 1073115--1074979 Score: 2515
Period size: 952 Copynumber: 2.0 Consensus size: 951
1073105 CATGTATTCT
*
1073115 TATGAGTATTCATGTTTGTCTTATTTAAGAGACGAACCTTGATTCTATCAAAAACAGTGGAAAGA
1 TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAACAGTGGAAAGA
* * *
1073180 AAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGG
66 AAAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAGG
* * * * * * *
1073245 TTCATAGTCTTGAAAAGAATGGAGATTGTTACGGGAATGTTGCTTGTCTAATTTAAGATACAAAC
131 TTCATAATCATGAAAAGAATGGAGACTATTACGAGAATGATGCTTGTCTAATTTAAGAGACAAAC
* * *
1073310 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCTTAAAAAAAAAAATCTTCATTATCAAT
196 TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATAAAAAAAAAAATCATCAATATCAAT
* *
1073375 TTTCTTAATGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTACTAGAAT
261 TTTCCTAAGGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTACTAGAAT
* *** * * *
1073440 CCATGTTTGTTTCATTGAAGGCATGAACTTAGACTATACAAAAATTGGTGGGAGGAAAGCTTTTC
326 CCATGTATGACACATTGAAGGCACGAACTCAGACTATACAAAAATTGGTGGGAAGAAAGCTTTTC
* * * * * * *
1073505 TTGCGAAACCAAAGCATCAATATTGTTTATCCTTTTGAGAAGACTTTGATTATAGCGCCTAATCC
391 TTGCGAAACCAAAGCATCAATATCGTGTATACTTATGAGAAGAATATGATTACAGCGCCTAATCC
* *
1073570 TGAAAAGAATTGGGATTAGTATAACTATTCAAGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
456 TGAAAAGAATGGGGATTAGTATAACTATTCAAGTTTGTCCTATTTAAGAGACAAACTTTGATTCT
* * * **
1073635 ATCAAAAACGATGGAGAGAAAAGCTTTTCTTATGACACCAAAGCATCAATGTCAAGTATCCTAAT
521 ATCAAAAACGATGGAAAGAAAAGCATTTCTTACGACACCAAAGCATCAAAATCAAGTATCCTAAT
** * * ** * *
1073700 AAAAGGAATGTGTTTTAGGTTCTCAATCCTAAAAATAATTGAGACTGTTACAAGCATCAATGCTT
586 AAAAGGAATGCATTTTAGGTTCCCAAACCTAAAAATAAGGGAGACTATTACAAGAATCAATGCTT
* *
1073765 GTCTTATTTAAGGGATGAACATTGATTTTTAGGAAAAATAGGGCAAAGAAAAGATTTCCACGTAA
651 GTCTTATTTAAGGGATGAACATTGATTTTTACGAAAAATAGGGCAAAGAAAAGATTTCCACGCAA
* ** * *
1073830 AAGAAAATCGTTGATATCATTTATGCAAATGAGAAGAATGTGTTTCTAGTGCCAAATCACAAAAT
716 AAGAAAATCATCAATATCATTTATCCAAATGAGAAGAATGTGTTTATAGTGCCAAATCACAAAAT
* *
1073895 TAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGATGCGCGAACTTAGAATTTACAAAA
781 TAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAA
* * *
1073960 ATTGGTGGGAAGAAACCCTTTCTTGCGAAAACAAAGCATCAATATTGTGTATCCTAATGAGAAGA
846 ATTAGTGGAAAGAAACCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCTAATGAGAAGA
1074025 CTAAGTTTATGGTGCCTAATCTAAAAAAGAGTAGGGATTAG
911 CTAAGTTTATGGTGCCTAATCTAAAAAAGAGTAGGGATTAG
* *
1074066 TATGAGTATT-ATTGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTGTGGAAAG
1 TATGAGTATTCA-TGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAACAGTGGAAAG
* *
1074130 AAAAGCTTTTCTAGCAACAGCAAAGCATCAATGTAATGTAACCTAGTGAAGGGAATGTGTTTTAG
65 AAAAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAG
* * ** * * ***
1074195 GTTCCTAATCATGAAAATAATGGAGACTATTTTGAGAATCGATGCTTGTCTTATTTAAGGGGTGA
130 GTTCATAATCATGAAAAGAATGGAGACTATTACGAGAAT-GATGCTTGTCTAATTTAAGAGACAA
* ** *
1074260 ACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATCAATATC-
194 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATAAAAAAAAAAATCATCAATATCA
* *
1074324 ATTTATCCTAAGGTGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA
259 ATTT-TCCTAAGGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATC-TTACTA
* * * * *
1074389 GAATCCTTGTATGACACATTTG-AGTCACGAACTCAGATTTTACGAAAATTGGTGGGAAGAAAG-
322 GAATCCATGTATGACACA-TTGAAGGCACGAACTCAGACTATACAAAAATTGGTGGGAAGAAAGC
* * * * *
1074452 TCTTTCTTGTGAAACCAAAGCATCAATATCGTGTATACTTATGAGAATAATATGTTTACGGTGCC
386 T-TTTCTTGCGAAACCAAAGCATCAATATCGTGTATACTTATGAGAAGAATATGATTACAGCGCC
* ** * * *
1074517 TAAT-CTGGAAAAGAATGGGGATTAGTATGACTATTCTCGTTTGTCCTATTTCAGTGGCAAACTT
450 TAATCCT-GAAAAGAATGGGGATTAGTATAACTATTCAAGTTTGTCCTATTTAAGAGACAAACTT
* * *
1074581 TGATTCTATCAAAAACGGTGGAAAGAACAA-CATTTCTTCCGACACCAAAGCATCAAAATCATGT
514 TGATTCTATCAAAAACGATGGAAAGAA-AAGCATTTCTTACGACACCAAAGCATCAAAATCAAGT
* * * * * * * * **
1074645 ATCCTAATGAAGGGCATGCATTTTTGGTTCCCAAACTTGAAAAGT-GGGGGGACTATTATGAGAA
578 ATCCTAATAAAAGGAATGCATTTTAGGTTCCCAAACCT-AAAAATAAGGGAGACTATTACAAGAA
* *
1074709 TCGATGCTTGTCTTATTTAAGGGGTGAAC-TTCGA-TTTTACGAAAAATAGGGCAAAGAAAAGAT
642 TCAATGCTTGTCTTATTTAAGGGATGAACATT-GATTTTTACGAAAAATAGGGCAAAGAAAAGAT
* * * * * * *
1074772 TTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGCGAGGGATGTGTTTATAGTGCCTA
706 TTCCACGCAAAAGAAAATCATCAATATCATTTATCCAAATGAGAAGAATGTGTTTATAGTGCCAA
*
1074837 ATCACAAAATTAAAGAAAATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGCACGAACTTAGA
771 ATCACAAAATTAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGA
* *
1074902 CTTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCT
836 ATTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCT
*
1074967 TATGAGAAGACTA
901 AATGAGAAGACTA
1074980 TGTGTGTGCT
Statistics
Matches: 786, Mismatches: 118, Indels: 19
0.85 0.13 0.02
Matches are distributed among these distances:
950 1 0.00
951 153 0.19
952 343 0.44
953 279 0.35
954 10 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (951 bp):
TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACCTTGATTCTATCAAAAACAGTGGAAAGA
AAAGCTTTTCTAGCAACACCAAAGCATCAATGTAATGTAACCTAATGAAGGGAATGTGTTTTAGG
TTCATAATCATGAAAAGAATGGAGACTATTACGAGAATGATGCTTGTCTAATTTAAGAGACAAAC
TTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATAAAAAAAAAAATCATCAATATCAAT
TTTCCTAAGGAGGAAAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCTTACTAGAAT
CCATGTATGACACATTGAAGGCACGAACTCAGACTATACAAAAATTGGTGGGAAGAAAGCTTTTC
TTGCGAAACCAAAGCATCAATATCGTGTATACTTATGAGAAGAATATGATTACAGCGCCTAATCC
TGAAAAGAATGGGGATTAGTATAACTATTCAAGTTTGTCCTATTTAAGAGACAAACTTTGATTCT
ATCAAAAACGATGGAAAGAAAAGCATTTCTTACGACACCAAAGCATCAAAATCAAGTATCCTAAT
AAAAGGAATGCATTTTAGGTTCCCAAACCTAAAAATAAGGGAGACTATTACAAGAATCAATGCTT
GTCTTATTTAAGGGATGAACATTGATTTTTACGAAAAATAGGGCAAAGAAAAGATTTCCACGCAA
AAGAAAATCATCAATATCATTTATCCAAATGAGAAGAATGTGTTTATAGTGCCAAATCACAAAAT
TAAAGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGAATTTACAAAA
ATTAGTGGAAAGAAACCCTTTCTTGCGAAAACAAAGCATCAATATCGTGTATCCTAATGAGAAGA
CTAAGTTTATGGTGCCTAATCTAAAAAAGAGTAGGGATTAG
Found at i:1075238 original size:292 final size:295
Alignment explanation
Indices: 1074700--1075274 Score: 815
Period size: 292 Copynumber: 1.9 Consensus size: 295
1074690 GGGGGGACTA
1074700 TTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTACGAAAAATAGGGCAAAG
1 TTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTACGAAAAATAGGGCAAAG
* * *
1074765 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGCGAGGGATGTGTTTATA
66 -AAAGA--TT-ATGCAAAAGAAAATCATCAATATCATTTATCCTAAT-CGAGGGACGTGCTTAAA
* * *
1074830 GTGCCTAATCACAAAATTAAAGAAAATCATTACTAGAATCCTTGTTTGTCTCATTTGAGGCACGA
126 GTGCCTAATCACAAAATGAAAGAAAATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGA
1074895 ACTTAGACTTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGT
191 ACTTAGACTTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGT
1074960 GTATCC-TTATGAGAAGACTATGTGTGTGCTAATGAGGATG
256 GTATCCATT-TGAGAAGACTATGTGTGTGCTAATGAGGATG
* * * *
1075000 TTATGGGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAGGGCAAAG
1 TTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTACGAAAAATAGGGCAAAG
*
1075065 -AA-A-T-TGCAAAAGAAAATCATCCATATCATTTATCCTAAT-GAGGAGAACGTGCTTAAAGTG
66 AAAGATTATGCAAAAGAAAATCATCAATATCATTTATCCTAATCGAGG-G-ACGTGCTTAAAGTG
*
1075125 CCTAATCACAAAATGAATA-AAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGC-CTGAA
129 CCTAATCACAAAATGAA-AGAAAATCATTACTAGAATCCATGTTTATCTCATTTGAGGCAC-GAA
* * * * * * * * *
1075188 CTTAGACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGTATCAATATCTTT
192 CTTAGACTTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGTG
1075253 TATCCATTTGAGAAGACTATGT
257 TATCCATTTGAGAAGACTATGT
1075275 TTATAGCGCC
Statistics
Matches: 249, Mismatches: 21, Indels: 18
0.86 0.07 0.06
Matches are distributed among these distances:
290 4 0.02
291 2 0.01
292 175 0.70
293 3 0.01
294 1 0.00
297 1 0.00
298 2 0.01
300 61 0.24
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (295 bp):
TTATGAGAATCGATGCTTGTCTTATTTAAGGGGTGAACTTCGATTTTACGAAAAATAGGGCAAAG
AAAGATTATGCAAAAGAAAATCATCAATATCATTTATCCTAATCGAGGGACGTGCTTAAAGTGCC
TAATCACAAAATGAAAGAAAATCATTACTAGAATCCATGTTTATCTCATTTGAGGCACGAACTTA
GACTTTACAAAAATTAGTGGAAAGAAACCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATC
CATTTGAGAAGACTATGTGTGTGCTAATGAGGATG
Found at i:1076012 original size:474 final size:471
Alignment explanation
Indices: 1075006--1079264 Score: 4878
Period size: 476 Copynumber: 9.0 Consensus size: 471
1074996 GATGTTATGG
*
1075006 GAATCGATGCTTGTCTTATTTAAGGGGTGAACTTTGATTTTATGGAAAATAGGGCAAAG--AA-A
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
* * * *
1075068 --T---TGCAAAAGAAAATCATCCATATCATTTATCCTAATGAGGAGAACGTGCTTAAAGTGCCT
66 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* *
1075128 AATCACAAAATGAATAAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGGC-CTGAACTTA
131 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GAACTTA
* * * * * *
1075192 GACTTTACAAATATTGGTGGGAGGAAAGCCTTTCTTGTGAAACCAAAGTATCAATATCTTTTATC
195 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-CG-AACCAAAGCATCAATATCGTGTATC
* *
1075257 CATT-TGAGAAGACTATGTTTATAGCGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTC
258 C-TTATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAG-ATTGGGATTAGTATGACTATTC
* **
1075321 AAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCT
320 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCTTTTCT
* *
1075386 TCGACACCAAAGCATCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTAGGTT-CTCAATCCT
385 TCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCT-AATCCT
* *
1075450 AAAAATAATGGAGACGGTTACGA
449 GAAAATAATGGAGACTGTTACGA
* ** *
1075473 GCATTAATGCTTGTCTTATTTAATGGATGAACTTTGATTTT-TAGGAAAATAGGGCAAAGAAAAG
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAT-GGAAAATAGGGCAAAGAAAAG
* *
1075537 ATTTCCATGTAAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTA-TG
65 ATTTCCATG-CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA-TAGTG
* * * * * *
1075601 CCAAATCACAAAATTAAAGAAAATCATTACTAGAATCCGTGTTTGTCTCATTTGAAGCACGAACT
128 CCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACT
* * *
1075666 TAGACTTTACAAAAATTGGTGGGAAGAAACCCTTTCTT-GTACCAAAGCATCAGTATCGTGTATC
193 TAGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCGAACCAAAGCATCAATATCGTGTATC
* * * *
1075730 CTGATGAGAAGACTATGTTTATGGTGCCTAATCCAAAAATGATTAGGGAGTAGTATGAATATTCA
258 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCGAAAA-GATT-GGGATTAGTATGACTATTCA
* * *
1075795 TGTTTATCTTATTTAAGAGACAAACTTTGATTTTATCGAAAACTATGGAAAGAAAAGCTTTTCTT
321 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCTTTTCTT
* * *
1075860 GCAACACCAAAGCATCAATGTCATGTAACCTGAA-GAAGGAAATGTGTTTTAGGTTCCTAATCAT
386 -CAACACCAAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGTTTTAGGTTCCTAATCCT
1075924 GAAAATAATGGAGACTGTTACGA
449 GAAAATAATGGAGACTGTTACGA
* *
1075947 GAATCGATGCTTGTCTTATTTAAGGGGTAAACTTTGATTTTATGGAAAATAGGGCACAA-AAAAG
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCA-AAGAAAAG
* * * *
1076011 ATTTCCATGCAAAAGAAAATCATCAATACCATTTATCCTAAGGTGGAGAATTTGTTTATAGTGCC
65 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * * *
1076076 TAATCAAAAAATGAACG-AGTATCATTACTAGAATCCTTGTTTGTCACATTTGAGTC-CTGAACT
130 TAATCACAAAATGAATGAAG-ATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC-GAACT
* * * *
1076139 CAGACTTTATGAAAAA-TGGTGGGAAGAAAGTCTTTCTTGTGAAACCAAAGCATCAATATCGTGT
193 TAGACTTTA-CAAAAATTGGTGGGAAGAAAGCCTTTCTT-CG-AACCAAAGCATCAATATCGTGT
* * * *
1076203 ATACTTATGAGAATACTATATTTATGGTGCCTAATCTTGAAAAGATTGAGGATTAGTATGACTAT
255 ATCCTTATGAGAAGACTATGTTTATGGTGCCTAATC-CGAAAAGATTG-GGATTAGTATGACTAT
* * * *
1076268 TC----TTG-----TTT----GTC---C--T-ATT-T-T-----A--GTGGAAAGAACAGCATTT
318 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCTTTT
* * * ** * * * *
1076305 CTTGCGACACCAAAGCATCAAAGTCATGTCTCCTAATGAAGGGTCTGCGTTTTCGGTTCCCAAAC
383 CTT-CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCTAATC
* * * * * *
1076370 TTTAAAAGACTAGAGATTGTTACGA
447 CTGAAAATAATGGAGACTGTTACGA
* *
1076395 GAATCGATGCTTGTTTTATTTAAGGGGTGAACTTTG-TTTTATGGAAAATAGGGCAAAGAAAAGA
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
* *
1076459 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGAACGTGTTTATAGTGCCT
66 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
1076524 AATCACAAAATGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTAAGGCACAAACTTAG
131 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * *
1076589 A-TGTTACAAAAATTGGTGGGAACAAAGGCTTTCTTGCGAAACTAAGCATCAATATCGTGTATCC
196 ACT-TTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-CGAACCAAAGCATCAATATCGTGTATCC
* * * * *
1076653 TTTTGAGAAGATTATGTTTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGACTATTTAT
259 TTATGAGAAGACTATGTTTATGGTGCCTAAT-CCGAAAAG-ATTGGGATTAGTATGACTATTCAT
* * * * *
1076718 GTTTGTCTTATTTAAGAGACAAACTTTGAATCAACCAAAAA-TGGTGTAAAGAAAAGCTTTTCTT
322 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACT-ATGGAAAGAAAAGCTTTTCTT
* * *
1076782 ACGACACTAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCTGATCCTG
386 -CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCTAATCCTG
* * *
1076847 AAAAGAATGGAGATTGTTACAA
450 AAAATAATGGAGACTGTTACGA
* * * * * *
1076869 GAATCAATGCTTGTCTTCTTTATGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGA
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
* *
1076934 TTTCCATGCAAAA-AAAATCATTAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
66 TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
* * *
1076998 AATCACAAAATGAATGAAGATCATTACTAGAATCCATATTTGTCTAATTTGAGGCATGAACTTAG
131 AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
* * * * * *
1077063 ACTTTACAAAAATTAGTGGGAA-AAATACCTTTCTTGCGAAGCCAAAACATTAATATAGCGTATC
196 ACTTTACAAAAATTGGTGGGAAGAAA-GCCTTTCTT-CGAA-CCAAAGCATCAATATCGTGTATC
* * * * * * *
1077127 CTAATGGGAAGACTATGTTTATGGTGCCTAGTCCCAAAGAAAATGGTGATTGGTATGACTATTCA
258 CTTATGAGAAGACTATGTTTATGGTGCCTAATCCGAAA-AGATTGG-GATTAGTATGACTATTCA
* * * * *
1077192 CGTGTGTCTTATTTAAGAGAAAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAGAAGCTTTTCT
321 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACT-ATGGAAAGAAAAGCTTTTCT
* * * * *
1077256 TAAGACACCAAAGCAACAATGTCATGTTTCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCCT
385 TCA-ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCTAATCCT
1077321 GAAAATAATGGAGA-TGGTTACGA
449 GAAAATAATGGAGACT-GTTACGA
* * * * * *
1077344 GCATCGATGCTTGTATTATTTAAGGTATGAACATTGATTTTA-AGAAAGATAGGTCAAAGAAAAG
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAA-ATAGGGCAAAGAAAAG
* * * * * *
1077408 ATTTTCATGCAAAAGAAAATCATTAATATCGTTTATCCTAATAAGGAGAATGTGTTTACAGTTCC
65 ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* * * *
1077473 AAATCCCAAAATGCATGAATATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAGC-T
130 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTT
* * *
1077537 AGACTTTAAAAAAATTGGTGGGAAGAAACCCTTTCTTGCGAAATCAAAGCATCAATATCGTGTAT
194 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-CG-AACCAAAGCATCAATATCGTGTAT
* * * ** * *
1077602 CCTTATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATAGTAATTAGTGTGAGTATTC
257 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAG-ATTGGGATTAGTATGACTATTC
* * *
1077667 ATGTTTGTCTTATTTAAGAGACGAACTTTGATTATATCAAAAAC-AGTGGAAGGAAAAGCTTTTC
320 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTA-TGGAAAGAAAAGCTTTTC
* * *
1077731 TTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCAC-AGTC
384 TT-CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC-CTAATC
* * * *
1077795 TTGAAAAGAATGGAGACTGTTATGG
447 CTGAAAATAATGGAGACTGTTACGA
* * * * *
1077820 GAATAGATGCTTGTCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
* * * *
1077885 TTTCC-TAGCAAAAGAAAATCTTCAATATCAATTATCCTAATAAGGAGAATCTGTTTATAGTGCC
66 TTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
1077949 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAAGC-T
130 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAA-CTT
* * *
1078013 AGACTTTAAAAAAATTGGTGGGAAGAAACCCTTTCTTGCGAAATCAAAGCATCAATATCGTGTAT
194 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-CG-AACCAAAGCATCAATATCGTGTAT
* * * ** * *
1078078 CCTTATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAATAGTAATTAGTGTGAGTATTC
257 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAG-ATTGGGATTAGTATGACTATTC
* * * *
1078143 ATGTTTGTCTTATTTAAGAGACGAACTTTGATTATATAAAAAAC-AGTGGAAGGAAAAGCTTTTC
320 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTA-TGGAAAGAAAAGCTTTTC
* * *
1078207 TTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCAC-AGTC
384 TT-CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC-CTAATC
* * * *
1078271 TTGAAAAGAATGGAGACTGTTATGG
447 CTGAAAATAATGGAGACTGTTACGA
* * * * *
1078296 GAATAGATGCTTGTCTAATTTAAGAGATAAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
1 GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
* * * *
1078361 TTTCC-TAGCAAAAGAAAATCTTCAATATCAATTATCCTAATAAGGAGAATCTGTTTATAGTGCC
66 TTTCCAT-GCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
* **
1078425 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCATAAACTTA
130 TAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA
* ** * * *
1078490 GACTATACAAAAATTGGTGGGGGGAAAGCCTTTCTTACAGAACCACAGCATCAATATTGTTTATC
195 GACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-C-GAACCAAAGCATCAATATCGTGTATC
* * * * *
1078555 TTTTTGAGAAGACTATGTTTCTAGTGCCTAATCTTGAAAAGAATTGGGATTAGTATGACTATTCA
258 CTTATGAGAAGACTATGTTTATGGTGCCTAATC-CGAAAAG-ATTGGGATTAGTATGACTATTCA
* * * **
1078620 AGTTTGCCTTATTTAAGAGATAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTT
321 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCTTTTCTT
* * * *
1078685 CAACACCAAAGCATCAATGTCATGTGTCCTAAT-AAAGGAATGTGTTTTAGGTT-CTGGATCCTA
386 CAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCT-AATCCTG
**
1078748 AAAATAATGGAGACCATTACGA
450 AAAATAATGGAGACTGTTACGA
* * * * *
1078770 GCATC-AGTGCTTGCCTTATTTAAAGGATGAACTTTGGTTTTTAT-GAAAATAGGGCATAGAAAA
1 GAATCGA-TGCTTGTCTTATTTAAGGGATGAACTTT-GATTTTATGGAAAATAGGGCAAAGAAAA
* * * * * * *
1078833 GATTTCAACGTAAAAGAAAATCATCCATAACATTTATCCTAATGAGTAGGATGTGTTTATAGTGC
64 GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
* * *
1078898 CTAATCACAAAATGAATAAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCCCGAACTT
129 CTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTT
* * * * * * *
1078963 AGACTTTACAAATATTGGTAGGAGGAAAGCCTTTCTTGTGAAACCAAAGTATCAATATCTTTTAT
194 AGACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTT-CG-AACCAAAGCATCAATATCGTGTAT
* * *
1079028 CCTTTTGAGAAGACTATGTTTATAGCGCCTAATCCTGAAAAGAATTGGGATTAGTATGACTATTC
257 CCTTATGAGAAGACTATGTTTATGGTGCCTAATCC-GAAAAG-ATTGGGATTAGTATGACTATTC
* *
1079093 AAGTTTGTCTTATTTAAGAGACAAACTTTGATTCTAT-AAAAAATGATGGAAAGAAAAGCTTTTC
320 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACT-ATGGAAAGAAAAGCTTTTC
* * *
1079157 TTCGACACCAAAGCATCAATGTCTTGTATCCTAATAAAGGGAATGTGTTTTAGGTT-CTCAATCC
384 TTCAACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCT-AATCC
* *
1079221 T-AAAAGTAATGGAGACAGTTACAA
448 TGAAAA-TAATGGAGACTGTTACGA
* *
1079245 GCATCCATGCTTGTCTTATT
1 GAATCGATGCTTGTCTTATT
1079265 GATGAAAACT
Statistics
Matches: 3290, Mismatches: 400, Indels: 196
0.85 0.10 0.05
Matches are distributed among these distances:
446 82 0.02
447 167 0.05
448 122 0.04
450 4 0.00
455 4 0.00
456 1 0.00
457 3 0.00
458 1 0.00
459 2 0.00
460 1 0.00
462 1 0.00
463 2 0.00
464 1 0.00
465 2 0.00
466 1 0.00
467 55 0.02
469 2 0.00
470 1 0.00
472 17 0.01
473 262 0.08
474 806 0.24
475 400 0.12
476 1328 0.40
477 25 0.01
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.32
Consensus pattern (471 bp):
GAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTATGGAAAATAGGGCAAAGAAAAGA
TTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCT
AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAG
ACTTTACAAAAATTGGTGGGAAGAAAGCCTTTCTTCGAACCAAAGCATCAATATCGTGTATCCTT
ATGAGAAGACTATGTTTATGGTGCCTAATCCGAAAAGATTGGGATTAGTATGACTATTCATGTTT
GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACTATGGAAAGAAAAGCTTTTCTTCAACA
CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCTAATCCTGAAAATA
ATGGAGACTGTTACGA
Found at i:1078107 original size:158 final size:159
Alignment explanation
Indices: 1076478--1078525 Score: 454
Period size: 159 Copynumber: 12.9 Consensus size: 159
1076468 AAAAGAAAAT
* ** ** * *
1076478 CATCAATATCATTTATCCTAATGAGGGGAACGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CAAAATGAATGAAG
* * *
1076543 ATCATTAGT-AGAATCCATGTTTGTCTCATTTAAG-GCAC-AAACTTAGA-TGTTACAAAAATTG
65 ATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAG-ACGAAGCTTAGACT-TTAAAAAAATTG
* ** *
1076604 GTGGGAACAAAGGCTTTCTTGCGAAA-CTAAG
128 GTGGGAAGAAACCCTTTCTTGCGAAATCAAAG
* ** * * * **
1076635 CATCAATATCGTGTATCCTTTTGAGAAGATTATGTTTATGGTGCCTAATGCTGAAAA-GAATGGG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAAT-C-CAAAATGAATGAA
* * ** ** * * * * *
1076699 GATTAGTA-TGACTATTTATGTTTGTCTTATTTAAGAGAC-AAACTTTGA-ATCAACCAAAAA-T
64 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTTTAA--AAAAATT
** * * * *
1076760 GGTGTAAAGAAAAGCTTTTCTTACGACA-CTAAAG
127 GGTGGGAAG-AAACCCTTTCTTGCGAAATC-AAAG
* * * * * *
1076794 CATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTT-TAGGTTCCTGATCCTGAAAA-GAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATATATTTAT-GGTGCCTAATCC--AAAATGAATG
* ** * * * * * * * * *
1076856 GAGATTGTTAC-AAGAATCAATGCTTGTCTTC-TTTATGGGATGAA-CTTTGATTTTAAGGAAAA
62 AAGATCATTACTGAGAATCCATGTTTGTC-TCATTTAAGAGACGAAGCTTAGACTTTAA-AAAAA
** ** ** * ** *
1076918 TAAG-GCAAAGGAAA-GATTTCCATGC-AAAAAAAAT
125 TTGGTGGGAA-GAAACCCTTT-CTTGCGAAATCAAAG
* * * * * * *
1076952 CATTAATATTATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CAAAATGAATGAAG
* * * * * *
1077017 ATCATTACT-AGAATCCATATTTGTCTAATTTGAG-GCATGAA-CTTAGACTTTACAAAAATTAG
65 ATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAG-ACGAAGCTTAGACTTTAAAAAAATTGG
* ** *
1077079 TGGGAA-AAATACCTTTCTTGCGAAGCCAAAA
129 TGGGAAGAAA-CCCTTTCTTGCGAAATCAAAG
* * * * * * * *
1077110 CATTAATAT-AGCGTATCCTAATGGGAAGACTATGTTTATGGTGCCTAGTCCCAAAGA-AAATGG
1 CATCAATATCA-TGTATCCTAATGAGAAGAATATATTTATGGTGCCTAAT-CCAAA-ATGAATGA
* *** ** * * * * * * * *
1077173 TGATTGGTA-TGACTATTCACGTGTGTCTTATTTAAGAGA-AAAACTTTGA-TTCTATCAAAAA-
63 AGATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTT-TA-AAAAAAT
* * * ** * *
1077234 TGGTGGAAAGAGAAGCTTTTCTTAAGACACCAAAG
126 TGGTGGGAAGA-AACCCTTTCTTGCGAAATCAAAG
* * * * * * * * * *
1077269 CAACAATGTCATGTTTCCTAATGA-AGGGAATGTGTTTTTGGTTCCCAATCCTGAAAAT-AATGG
1 CATCAATATCATGTATCCTAATGAGA-AGAATATATTTATGGTGCCTAATCC--AAAATGAATGA
** * * * * * * * *
1077332 AGATGGTTAC-GAGCATCGATGCTTGTATTATTTAAG-GTATGAA-CATT-GATTTTAAGAAAGA
63 AGATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAG-ACGAAGC-TTAGACTTTAA-AAAAA
* ** *** * * ** *
1077393 TAGGT-CAAAGAAAAGATTTTCATGCAAAAGAAAAT
125 TTGGTGGGAAG-AAACCCTTTCTTGCGAAATCAAAG
* * * * * * * ** * * * *
1077428 CATTAATATCGTTTATCCTAATAAGGAGAATGTGTTTACAGTTCCAAATCCCAAAATGCATGAAT
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAAT-CCAAAATGAATGAAG
*
1077493 ATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACGAAGC-TAGACTTTAAAAAAATTGG
65 ATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAG-ACGAAGCTTAGACTTTAAAAAAATTGG
1077555 TGGGAAGAAACCCTTTCTTGCGAAATCAAAG
129 TGGGAAGAAACCCTTTCTTGCGAAATCAAAG
* * * *
1077586 CATCAATATCGTGTATCCTTATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAAT--AG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCC-AAAATGAATGAAG
* * * * * * *
1077649 -TAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACGAA-CTTTGA-TTATATCAAAAA-
65 ATCATTA--CTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTT-TA-AAAAAAT
** * * *
1077710 CAGT-GGAAGGAAAAGCTTTTCTTGC-AACACCAAAG
126 TGGTGGGAA-G-AAACCCTTTCTTGCGAA-ATCAAAG
* * * * * * * * *
1077745 CATCAATGTCATGTAACCTAATGA-AGGGAATGTGTTTTTGGTTCAC-AGTCTTGAAAA-GAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATATATTTATGGTGC-CTAATC--CAAAATGAATG
* * * ** * * * * * * *
1077807 GAGA-CTGTTA-TGGGAATAGATGCTTGTCTAATTTAAGAGA-TAAACTTTGATTTTAAGGAAAA
62 AAGATC-ATTACTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTTTAA-AAAAA
* ** *** * * ** *
1077869 TAGG-GCAAAGAAAAGATTTCCTAGCAAAAGAAAAT
125 TTGGTGGGAAGAAACCCTTT-CTTGCGAAATCAAAG
* * * * * *
1077904 CTTCAATATCAAT-TATCCTAATAAGGAGAATCTGTTTATAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATC-ATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CAAAATGAATGAA
*
1077968 GATCATTACT-AGAATCCATGTTTGTCTCATTTGAG-GCACGAAGC-TAGACTTTAAAAAAATTG
64 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAG-ACGAAGCTTAGACTTTAAAAAAATTG
1078030 GTGGGAAGAAACCCTTTCTTGCGAAATCAAAG
128 GTGGGAAGAAACCCTTTCTTGCGAAATCAAAG
* * * *
1078062 CATCAATATCGTGTATCCTTATGAGAAGACTATATTTATGGTGCCTAATCCTAAAAAGAAT--AG
1 CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCC-AAAATGAATGAAG
* * * * * *
1078125 -TAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACGAA-CTTTGA-TTATATAAAAAA-
65 ATCATTA--CTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTT-TA-AAAAAAT
** * * *
1078186 CAGT-GGAAGGAAAAGCTTTTCTTGC-AACACCAAAG
126 TGGTGGGAA-G-AAACCCTTTCTTGCGAA-ATCAAAG
* * * * * * * * *
1078221 CATCAATGTCATGTAACCTAATGA-AGGGAATGTGTTTTTGGTTCAC-AGTCTTGAAAA-GAATG
1 CATCAATATCATGTATCCTAATGAGA-AGAATATATTTATGGTGC-CTAATC--CAAAATGAATG
* * * ** * * * * * * *
1078283 GAGA-CTGTTA-TGGGAATAGATGCTTGTCTAATTTAAGAGA-TAAACTTTGATTTTAAGGAAAA
62 AAGATC-ATTACTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTTTAA-AAAAA
* ** *** * * ** *
1078345 TAGG-GCAAAGAAAAGATTTCCTAGCAAAAGAAAAT
125 TTGGTGGGAAGAAACCCTTT-CTTGCGAAATCAAAG
* * * * * *
1078380 CTTCAATATCAAT-TATCCTAATAAGGAGAATCTGTTTATAGTGCCTAATCACAAAATGAATGAA
1 CATCAATATC-ATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATC-CAAAATGAATGAA
* * * *
1078444 GATCATTACT-AGAATCCATGTTTGTCTCATTTAAG-G-CATAAACTTAGACTATACAAAAATTG
64 GATCATTACTGAGAATCCATGTTTGTCTCATTTAAGAGAC-GAAGCTTAGACTTTAAAAAAATTG
** *
1078506 GTGGGGGGAAAGCCTTTCTT
128 GTGGGAAGAAACCCTTTCTT
1078526 ACAGAACCAC
Statistics
Matches: 1360, Mismatches: 400, Indels: 261
0.67 0.20 0.13
Matches are distributed among these distances:
155 10 0.01
156 9 0.01
157 130 0.10
158 468 0.34
159 671 0.49
160 62 0.05
161 4 0.00
162 6 0.00
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.31
Consensus pattern (159 bp):
CATCAATATCATGTATCCTAATGAGAAGAATATATTTATGGTGCCTAATCCAAAATGAATGAAGA
TCATTACTGAGAATCCATGTTTGTCTCATTTAAGAGACGAAGCTTAGACTTTAAAAAAATTGGTG
GGAAGAAACCCTTTCTTGCGAAATCAAAG
Found at i:1078278 original size:159 final size:158
Alignment explanation
Indices: 1077568--1078731 Score: 478
Period size: 159 Copynumber: 7.3 Consensus size: 158
1077558 GAAGAAACCC
* * * * * * * *
1077568 TTTCTTGCGAA-ATCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTATATTTATGGTGCC
1 TTTCTTGC-AACACCAAAGCATCAATATCATGTAACCTAATGAAG-GGAATGTGTTTATGGTGCC
* * *
1077631 TAATCCTAAAAAGAATAGTAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTT
64 TAATCTTGAAAAGAATAGTAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTTT
*
1077696 GATTATATCAAAAACAGTGGAAGGAAAAGCT
129 GATT-TATAAAAAACAGTGGAAGGAAAAGCT
* * *
1077727 TTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCAC-
1 TTTCTTGCAACACCAAAGCATCAATATCATGTAACCTAATGAAGGGAATGTGTTTATGGTGC-CT
* * * * * ** * * **
1077791 AGTCTTGAAAAGAAT-GGAGACT-GTTATGGGAATAGATGCTTGTCTAATTTAAGAGATAAACTT
65 AATCTTGAAAAGAATAGTA-ATTAG-TGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTT
* * *
1077854 TGATTT-TAAGGAAAATAG-GGCAAAGAAAAGAT
128 TGATTTATAA--AAAACAGTGG-AAGGAAAAGCT
* * * ** * * * * *
1077886 TTCCTAGCAAAAGAAAATCTTCAATATCAAT-TATCCTAAT-AAGGAGAATCTGTTTATAGTGCC
1 TTTCTTGCAACACCAAAGCATCAATATC-ATGTAACCTAATGAAGG-GAATGTGTTTATGGTGCC
** * * * * *
1077949 TAATC-ACAAAATGAATGAAGATCATTA--CT-AGAATCCATGTTTGTCTCATTTGAG-GCACGA
64 TAATCTTGAAAA-GAAT--AG-TAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAG-ACGA
* ** * *
1078009 AGC-TAGACTTTA-AAAAAATTGGTGGGAA-G-AAACCC
124 A-CTTTGA-TTTATAAAAAA-CAGT-GGAAGGAAAAGCT
* * * * * * * *
1078044 TTTCTTGCGAA-ATCAAAGCATCAATATCGTGTATCCTTATG-AGAAGACTATATTTATGGTGCC
1 TTTCTTGC-AACACCAAAGCATCAATATCATGTAACCTAATGAAG-GGAATGTGTTTATGGTGCC
* * *
1078107 TAATCCTAAAAAGAATAGTAATTAGTGTGAGTATTCATGTTTGTCTTATTTAAGAGACGAACTTT
64 TAATCTTGAAAAGAATAGTAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTTT
1078172 GATTATATAAAAAACAGTGGAAGGAAAAGCT
129 GATT-TATAAAAAACAGTGGAAGGAAAAGCT
* * *
1078203 TTTCTTGCAACACCAAAGCATCAATGTCATGTAACCTAATGAAGGGAATGTGTTTTTGGTTCAC-
1 TTTCTTGCAACACCAAAGCATCAATATCATGTAACCTAATGAAGGGAATGTGTTTATGGTGC-CT
* * * * * ** * * **
1078267 AGTCTTGAAAAGAAT-GGAGACT-GTTATGGGAATAGATGCTTGTCTAATTTAAGAGATAAACTT
65 AATCTTGAAAAGAATAGTA-ATTAG-TGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTT
* * *
1078330 TGATTT-TAAGGAAAATAG-GGCAAAGAAAAGAT
128 TGATTTATAA--AAAACAGTGG-AAGGAAAAGCT
* * * ** * * * * *
1078362 TTCCTAGCAAAAGAAAATCTTCAATATCAAT-TATCCTAAT-AAGGAGAATCTGTTTATAGTGCC
1 TTTCTTGCAACACCAAAGCATCAATATC-ATGTAACCTAATGAAGG-GAATGTGTTTATGGTGCC
** * * * * **
1078425 TAATC-ACAAAATGAATGAAGATCATTA--CT-AGAATCCATGTTTGTCTCATTTAAG-GCATAA
64 TAATCTTGAAAA-GAAT--AG-TAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAG-ACGA
* * ** * * *
1078485 ACTTAGA-CTATACAAAAATTGGTGG-GGGGAAAGCC
124 ACTTTGATTTATA-AAAAA-CAGTGGAAGGAAAAGCT
* * ** * * * ** * * * * *
1078520 TTTCTTACAGA-ACCACAGCATCAATATTGTTTATCTTTTTG-AGAAGACTATGTTTCTAGTGCC
1 TTTCTTGCA-ACACCAAAGCATCAATATCATGTAACCTAATGAAG-GGAATGTGTTTATGGTGCC
* ** * ** * * **
1078583 TAATCTTGAAAAGAATTGGGATTAGTATGACTATTCAAGTTTGCCTTATTTAAGAGATAAACTTT
64 TAATCTTGAAAAGAATAGTAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTTT
* * *
1078648 GATTCTATCAAAAACGGTGGAAAGAAAAGCT
129 GATT-TATAAAAAACAGTGGAAGGAAAAGCT
* ** *
1078679 TTTCTT-CAACACCAAAGCATCAATGTCATGTGTCCTAAT-AAAGGAATGTGTTT
1 TTTCTTGCAACACCAAAGCATCAATATCATGTAACCTAATGAAGGGAATGTGTTT
1078732 TAGGTTCTGG
Statistics
Matches: 732, Mismatches: 199, Indels: 150
0.68 0.18 0.14
Matches are distributed among these distances:
155 9 0.01
156 3 0.00
157 25 0.03
158 245 0.33
159 416 0.57
160 26 0.04
161 2 0.00
162 6 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (158 bp):
TTTCTTGCAACACCAAAGCATCAATATCATGTAACCTAATGAAGGGAATGTGTTTATGGTGCCTA
ATCTTGAAAAGAATAGTAATTAGTGTGAGAATTCATGTTTGTCTTATTTAAGAGACGAACTTTGA
TTTATAAAAAACAGTGGAAGGAAAAGCT
Found at i:1081572 original size:475 final size:473
Alignment explanation
Indices: 1079963--1081670 Score: 2144
Period size: 475 Copynumber: 3.6 Consensus size: 473
1079953 TCATCACTTA
* * * *
1079963 TTTAATGGATGAACTTTGATTTTTAGGAAAATAGGGCAAAGAAAAGATGTCCATGTAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * *
1080028 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATTGTGCCAAATCACAAAATTAAAGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * * *
1080093 AATCATTACTAGAATCCATGTTTGTCACCTTTGAAGCATGAACTTAGACTTTACAAAAATTGGTA
131 GATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
* * * * *
1080158 GGAAGAAACCCTTTCTTACGAAACCAAAGCATCAATATCGTGTATCCTGATGAGAAGACTTTGTT
196 GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATATT
* * * * *
1080223 TATGGTGCCTAATCCAAAAATGAATAGGGATTAGTATGAGTATTCATGTTTATCTTATTTAAAAG
261 TATGGTGCCTAATCTAAAAA-GAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAG
* *
1080288 ACAAACTTTGATTTTATCAAAAACT-ATGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
325 ACAAACTTTGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
* * *
1080352 TGTCATGTAACCTAAAGAAGGGAATGTGTTTTAGGTTCCTAATCATGAAAATAATGGAGACTGTT
389 TGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCC-AATCTTGAAAATAATGGAGACTGTT
* * *
1080417 ACGACAATTGATGTTTGTCTT
453 ACGAGAATCGATGCTTGTCTT
* * * *
1080438 ATTTAAGGGGTGAACTTTGA-TTTATGGAAAATAGGGCAAAGAAAAGATTTCCAAGCGAAAGAAA
1 -TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
* ** * *
1080502 ATCATCAATATCATTAATCCTAGGGTGGAGAATTTGTTTATAGTGCCTAATCACAAAATGAATGA
65 ATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA
* * * * ** *
1080567 GGATCATTACTAGAATCCTTGTTTGTCACATTTG-GGTCACGAAGTCAGACTTTTTAAAAAATGG
130 AGATCATTACTAGAATCCATGTTTGTCACATTTGAGG-CACGAACTTAGACTTTACAAAAATTGG
* * * * *
1080631 TGGGAAGAAAGTCTTTCCTGTGAAACCAAAGCATCAATATCGTGTATACTTATGAGAATACTATA
194 TGGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATA
* * *
1080696 TTTATGGTGCCTAATCTCAAAAAGAATGGGGATTAGTATGACTATTCT-TGTTTGTCCTATTTCA
259 TTTATGGTGCCTAATCT-AAAAAGAATGGGGATTAGTATGAGTATT-TATGTTTGTCTTATTTAA
* * * ** *
1080760 GTGGCAAACTTTGATTCTATCGAAAATGGTGGAAAGAACAA-CAATTCTTGCGACACCAAAGCAT
322 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAA-AAGCTTTTCTTGCAACACCAAAGCAT
* * * ** * * * * *
1080824 -AAAGTCATGTCTCCTAATGAAGGGTATGCATTTTCGGTTCCCAAACTTGAAAAGACTAGAGACT
386 CAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTT-CCAATCTTGAAAATAATGGAGACT
1080888 GTTACGAGAATCGATGCTTGTCTT
450 GTTACGAGAATCGATGCTTGTCTT
* * ** *
1080912 ATTAAGGGGTGAACTTTG-TTTTGTGGAAAATAGGGTAAAGAAAAGATTTCCATGCAAAAGAAAA
1 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
* * * *
1080976 TCATCAATCTCATTTATCCTAATGAGGGGGACGTGTTTATAGTGCCTAATCACAAAATGAATGAA
66 TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * * *
1081041 GATCACTAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGA-TGTTACAAAAATTGGT
131 GATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACT-TTACAAAAATTGGT
* * * * *
1081105 GGGAAGAAAGCCTTTCTTGCAAAAACAAAGCATCAATATCGTGTATCCTTTTGAGAAGATTATGT
195 GGGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATAT
* *
1081170 TTATGGTGCCTAATGCTGAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTTTTATTTAAGA
260 TTATGGTGCCTAAT-CTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGA
* * * * ** *
1081235 GACAAACTTTGAATCAACCAAAAATGGTGTAAAGAAAAGCTTTTCTCACAACACCAAAGCATCAC
324 GACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAA
* * *
1081300 TGTCATGTATCCTAATGATGGGAATGTGTTTTAGGTTCTCGATCTTGAAAATAATGGAGATTGTT
389 TGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTC-CAATCTTGAAAATAATGGAGACTGTT
*
1081365 ACGAGAATCGATGGTTGTCTT
453 ACGAGAATCGATGCTTGTCTT
* *
1081386 CTTTATA-GGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGGAAAGATTTCCATGCAAAA-AA
1 -TTTA-AGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAA
* * *
1081449 AGTCATCAATATTATTTATCCTAATGAAGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
64 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
* * *
1081514 AAGATCATTACTAGAATCCATATTTGTCTA-ATTTGAGGCATGAACTTAGACTTTACAAAAATTA
129 AAGATCATTACTAGAATCCATGTTTGTC-ACATTTGAGGCACGAACTTAGACTTTACAAAAATTG
* * * *
1081578 GTGGGAA-AAATGCCTTTCTTGCGAAGCCAAGGCATCAATATCGTATATCCTTATGAGTAGACTA
193 GTGGGAAGAAA-GCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTA
*
1081642 TATTTATGGTGCCTAATCCGAAAAAGAAT
257 TATTTATGGTGCCTAAT-CTAAAAAGAAT
1081671 AGTGAACTTT
Statistics
Matches: 1041, Mismatches: 171, Indels: 41
0.83 0.14 0.03
Matches are distributed among these distances:
472 4 0.00
473 320 0.31
474 149 0.14
475 506 0.49
476 62 0.06
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (473 bp):
TTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAA
TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
GATCATTACTAGAATCCATGTTTGTCACATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTG
GGAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATCGTGTATCCTTATGAGAAGACTATATT
TATGGTGCCTAATCTAAAAAGAATGGGGATTAGTATGAGTATTTATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATCAATG
TCATGTATCCTAATGAAGGGAATGTGTTTTAGGTTCCAATCTTGAAAATAATGGAGACTGTTACG
AGAATCGATGCTTGTCTT
Found at i:1088868 original size:18 final size:18
Alignment explanation
Indices: 1088845--1088951 Score: 56
Period size: 21 Copynumber: 5.3 Consensus size: 18
1088835 ATGTTCTTCT
1088845 CTCCTCCTCCTATCATCC
1 CTCCTCCTCCTATCATCC
*
1088863 CTCCT-CTCTCTATTATCTCTC
1 CTCCTCCTC-CTATCA--TC-C
1088884 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
*
1088905 CTCCTATCTCTACTATC-TCTC
1 CTCC--TC-CTCCTATCATC-C
1088926 CTGTCTCTCCTCCTATCATCC
1 C--TC-CTCCTCCTATCATCC
1088947 CTCCT
1 CTCCT
1088952 TTCTCTTCTT
Statistics
Matches: 69, Mismatches: 4, Indels: 32
0.66 0.04 0.30
Matches are distributed among these distances:
17 3 0.04
18 13 0.19
19 4 0.06
20 6 0.09
21 22 0.32
22 6 0.09
23 4 0.06
24 8 0.12
25 3 0.04
ACGTcount: A:0.10, C:0.48, G:0.02, T:0.40
Consensus pattern (18 bp):
CTCCTCCTCCTATCATCC
Found at i:1088900 original size:42 final size:42
Alignment explanation
Indices: 1088848--1088966 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1088838 TTCTTCTCTC
* *
1088848 CTCCTCCTATCATCCCTCCTCTCTCTATTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1088890 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
* * *
1088932 CTCCTCCTATCATCCCTCCTTTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1088967 TTGAGGGCTA
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.09, C:0.45, G:0.02, T:0.44
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
Found at i:1088907 original size:12 final size:11
Alignment explanation
Indices: 1088881--1088956 Score: 52
Period size: 12 Copynumber: 6.9 Consensus size: 11
1088871 TCTATTATCT
*
1088881 CTCCTGTCTCTC
1 CTCCTATCTC-C
1088893 CTCCTATCATCC
1 CTCCTATC-TCC
1088905 CTCCTATCT--
1 CTCCTATCTCC
*
1088914 CTACTATCT--
1 CTCCTATCTCC
*
1088923 CTCCTGTCTCTC
1 CTCCTATCTC-C
1088935 CTCCTATCATCC
1 CTCCTATC-TCC
*
1088947 CTCCTTTCTC
1 CTCCTATCTC
1088957 TTCTTTCTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
9 15 0.28
11 3 0.06
12 31 0.58
13 4 0.08
ACGTcount: A:0.09, C:0.47, G:0.03, T:0.41
Consensus pattern (11 bp):
CTCCTATCTCC
Found at i:1091547 original size:475 final size:475
Alignment explanation
Indices: 1090584--1092401 Score: 2207
Period size: 475 Copynumber: 3.8 Consensus size: 475
1090574 GTTCTCATAA
* * * *
1090584 GAAGAAAGCCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTCAT-GGAAGACT-TGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTTATAAGAAGACTATGTTT
* * *
1090647 ATGGTGCCTAAT-CTCAAAAAGAGTGGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAG
66 ATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAG
* *
1090711 ACAAAATTTGATTCTATCAAAAACGGTGGAAAGAAAAGC-TTTCTTGCGACACCAAAGCATCAAT
130 ACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAAA
* * * * *
1090775 GTTATGTATCCTAATC-AAGGGACTGTGTTTTAGGTTCACAATCCTGAAAATAATGGAGACTGTT
195 GTCATGTATCCTAA-CGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAGACTATT
* * *
1090839 ACGAGTATCGATGGC-TATCTTATTTAAGGTATGAACATTGATTTTAAGGAAAATAGGGCAAAGA
259 ACGAGAATCGAT-GCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
1090903 AAAGATTTTCACGCAAAAGAAAATCATCAATATCATTTATCCTAAGGAGGAGAATGTGTTTATAG
323 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
1090968 TGCCTAATCACAAAAT-GATTGAAGATCTTTACTAGAATCCTTGTTTGTCACATTTGAGTCACGA
388 TGCCTAATCACAAAATGGA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGA
* * * *
1091032 ACTCAAACTTGATGAAAATTGGTGG
452 ACTTAGACTTTAAG-AAATTGGTGG
* * * * * *
1091057 AAAGAAAGTCTTTCTTGTGAAACCAAAGTATCAATATCCTGTATACC-TATAAGAACACTACGTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTAT-CCTTATAAGAAGACTATGTT
*** * * * *
1091121 TATGGTGCCTAAT-CTCGAAAAGAATATAGATTAGTGTGACTATTCTTGTTTGTCCTATTTCAGA
65 TATGGTGCCTAATCCT-GAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGA
* *
1091185 GGCAAACTTTGATTCTATCGAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAA
129 GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAA
* * * * * *
1091250 AGTCATGTATCCTAACGAAGGGTATGTGATTTT-GGTTCCCAAACTTGAAAAGACTAGAGACTAC
194 AGTCATGTATCCTAACGAAGGGAATGTG-TTTTAGGTTCCCAATCCTGAAAATAATAGAGACTAT
* * *
1091314 TACAAGAATCGATGCTTATCTTATTTAAGGGA-GAACTTTGATTTTATGAAAAATAGGGCAAAGA
258 TACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * **
1091378 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGGGGACATGTTTATAG
323 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
* * * *
1091443 TGCCTAATCTCAAAATGGATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACAAA
388 TGCCTAATCACAAAATGGATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGAA
1091508 CTTAGACTTTACAGAAATTGGTGG
453 CTTAGACTTTA-AGAAATTGGTGG
* * * *
1091532 GAAGAAACCCTTTCTTGCGAAACCAAAGAATCAATATCGTGTATCCTTTTGAGAAGACTATGTTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTTATAAGAAGACTATGTTT
** *
1091597 ATGGCACCTAATCCTGAAAAGAATGGGGAATAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
66 ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
* * * *
1091662 CAAACTTTGAATCTATCAAAAATGGTGTAAAGAAAAGCATTTCTTACGACACCAAAGCATCAATA
131 CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAA-A
* * * ** * *
1091727 -TCATGTATCCTAATGAAGGGAATGT-TTTCTAGGTTCTCGATCCTGAAAATAAGGGATG-TTGT
195 GTCATGTATCCTAACGAAGGGAATGTGTTT-TAGGTTCCCAATCCTGAAAATAATAGA-GACTAT
* * * *
1091789 TACGAGAATCGATGCTTGTCTT-CTTAATAGGATGAACTTTGATTTTAAGGAAAATATGGCAAAG
258 TACGAGAATCGATGCTTATCTTATTTAA-GGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAG
* * *
1091853 GAAAGATTTCCATGCAAAAAAAAAAATTCATCAATATCATTTATCCTACTGAGGAGAATGTGTTT
322 AAAAGATTTCCATGC--AAAAGAAAA-TCATCAATATCATTTATCCTAATGAGGAGAATGTGTTT
*
1091918 ATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACA
384 ATAGTGCCTAATCACAAAATGGATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACA
* * *
1091983 TGAAGTTAGACTTTATAAAAATTGGTGG
449 CGAACTTAGACTTTA-AGAAATTGGTGG
* * *
1092011 GAAGAAAGCCATTCTTGCGAAACCAAAGCT-TCAATATCGTGTATCCTTGTAGGAAGACTATGTT
1 GAAGAAAGCCTTTCTTGCGAAACCAAAG-TATCAATATCGTGTATCCTTATAAGAAGACTATGTT
* * * * * * *
1092075 TATGGTGCCTAATCCTGAAAAGAATGGGGATTGGCT-CGACTCTTTATTTTTCTATTATTTAAGA
65 TATGGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATGACTATTCATGTTTGTCTTATTTAAGA
* * * * ** *
1092139 GCCAATCTTTGATTCTATAAAAAAACGGGGGAAAGAAAAGTTTTTCTTGCGACACCAACGCATCA
129 GACAAACTTTGATTCTAT-CAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCA
* * * * * * * *
1092204 ATGTCATGTATCTTAAGGAAGAGAATGTGATCTAGGTTCCTAATCCTAAAAATAATAGAGACTAT
193 AAGTCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAGACTAT
* * * * * * *
1092269 TATGAGAATTGATGCTTTTCTTATTTAAGTGATGAATTTTGATTATAAGGAAAA-CGGGCAAAG-
258 TACGAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGA
* * *
1092332 AAAGATTTCCATGCAAAAGAAAATGATCAATAACATTTACCCTAATGAGGAGAATGTGTTTATAG
323 AAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAG
1092397 TGCCT
388 TGCCT
1092402 GATGACAACC
Statistics
Matches: 1141, Mismatches: 177, Indels: 52
0.83 0.13 0.04
Matches are distributed among these distances:
473 43 0.04
474 15 0.01
475 525 0.46
476 152 0.13
477 4 0.00
478 22 0.02
479 249 0.22
480 126 0.11
481 5 0.00
ACGTcount: A:0.35, C:0.15, G:0.19, T:0.31
Consensus pattern (475 bp):
GAAGAAAGCCTTTCTTGCGAAACCAAAGTATCAATATCGTGTATCCTTATAAGAAGACTATGTTT
ATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATGACTATTCATGTTTGTCTTATTTAAGAGA
CAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCTTGCGACACCAAAGCATCAAAG
TCATGTATCCTAACGAAGGGAATGTGTTTTAGGTTCCCAATCCTGAAAATAATAGAGACTATTAC
GAGAATCGATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAATAGGGCAAAGAAAA
GATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGC
CTAATCACAAAATGGATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGACACGAACTT
AGACTTTAAGAAATTGGTGG
Found at i:1094217 original size:9 final size:9
Alignment explanation
Indices: 1094205--1094265 Score: 56
Period size: 9 Copynumber: 7.1 Consensus size: 9
1094195 CTCTCTCTAT
1094205 TATCTCTCC
1 TATCTCTCC
1094214 TATCTCTCC
1 TATCTCTCC
* *
1094223 T-CCTAT-C
1 TATCTCTCC
*
1094230 -ATCCCTCC
1 TATCTCTCC
*
1094238 TATCTCTAC
1 TATCTCTCC
1094247 TATCTCTCC
1 TATCTCTCC
*
1094256 TGTCTCTCC
1 TATCTCTCC
1094265 T
1 T
1094266 CCTATCATCC
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
7 3 0.08
8 4 0.10
9 33 0.82
ACGTcount: A:0.11, C:0.44, G:0.02, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1094225 original size:12 final size:12
Alignment explanation
Indices: 1094210--1094244 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
1094200 TCTATTATCT
1094210 CTCCTATCTCTC
1 CTCCTATCTCTC
1094222 CTCCTATCATC-C
1 CTCCTATC-TCTC
1094234 CTCCTATCTCT
1 CTCCTATCTCT
1094245 ACTATCTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
11 2 0.10
12 17 0.81
13 2 0.10
ACGTcount: A:0.11, C:0.49, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1094232 original size:42 final size:42
Alignment explanation
Indices: 1094177--1094295 Score: 184
Period size: 42 Copynumber: 2.8 Consensus size: 42
1094167 TTCTTCTCTC
* *
1094177 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1094219 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTGTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
* *
1094261 CTCCTCCTATCATCCCTCCTCTCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCT
1094296 TTGAGGGCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 70 1.00
ACGTcount: A:0.09, C:0.46, G:0.02, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTCTCTCTACTATCTCTCCTATCT
Found at i:1094237 original size:24 final size:24
Alignment explanation
Indices: 1094201--1094286 Score: 85
Period size: 24 Copynumber: 3.8 Consensus size: 24
1094191 CCTCCTCTCT
* *
1094201 CTATTATCTCTCCTATCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
1094225 CTATCATCCCTCCTA--TCT-CTA
1 CTATCATCCCTCCTATCTCTCCTC
*
1094246 CTATC-T--CTCCTGTCTCTCCTC
1 CTATCATCCCTCCTATCTCTCCTC
*
1094267 CTATCATCCCTCCTCTCTCT
1 CTATCATCCCTCCTATCTCT
1094287 TCTTTCTCTT
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
18 5 0.10
20 4 0.08
21 14 0.28
22 4 0.08
24 23 0.46
ACGTcount: A:0.12, C:0.45, G:0.01, T:0.42
Consensus pattern (24 bp):
CTATCATCCCTCCTATCTCTCCTC
Found at i:1100704 original size:476 final size:475
Alignment explanation
Indices: 1099762--1101616 Score: 2001
Period size: 476 Copynumber: 3.9 Consensus size: 475
1099752 GATGGTTGTT
* * * * * * *
1099762 TTTATTGTGCATAATCACAAAATGAATGAAGATCATTGCTGGAATCCATGTTTG-C-AAAT-GAG
1 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAG
* * * *
1099824 GCACGAACTTAGGCTTTA-ACAAAATTGGTGGGAAGAAAGCCTTTCTTGCAAAACTAAAGCATCA
66 TCACGAACTTAGACTTTACA-AAAATTGGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATCA
* ** * * * *** ** *
1099888 ACATTGTGTATCCTTATGAGAAGACTTTGCACATGGTATCTAA-TCT---CA-AA-----A--AG
130 ATATCATGTATACTTATGAGAATACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAG
* * * * * * *
1099941 TATGAGTATTCATGTTTGTCTTTTTTAAG-GGATAAACTTTGAATCAATCAAAAACGGTGTAAAG
195 TATGACTATTC-TTTTTGTCTTATTTAAGAGG-CAAACTTTGATTCTATCAAAAACAGTGTAAAG
* * * *
1100005 AAAAGCTTTTCTTACGACACCAAAGCGTCGATGTCATGTATCCTAATCAAGGGAATGTGCTTTAG
258 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * *
1100070 GTTCCCAATCCTGAAAATAATAGG-GACTATT-CGAGCATCGATGCTTGTCTAATTTAAGGTG-T
323 GTTCCCAATCCTGAAAATAAT-GGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGG-GAT
** * * * *
1100132 GAACATTGATTTTAAGGAAAATAGGTTAAAGTAAAGATTTCTATGCAAAATAAAATCATTAATAT
386 GAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATAAATAT
*
1100197 CATTTATCCTAATAAGGAGAATGTG
451 CATTTATCCTAATGAGGAGAATGTG
* *
1100222 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCTTGTTTGTCACATTGGAG
1 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAG
* * * * *
1100287 TCACGAACTCAAATTTTATGAAAAA-TGGTGGGAAGAAAGTCTTTCTTGCCAAACCAAAGCATCA
66 TCACGAACTTAGACTTTA-CAAAAATTGGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATCA
* *
1100351 ATATCATGTATGCTTATGAGAATACTATGTTTATGCTGCCTAATTCTGAAAAGAATGGGGATTAG
130 ATATCATGTATACTTATGAGAATACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAG
* * *
1100416 TATGACTATTCTTATTTGTCCTATTTCAGAGGCAAACTTTGATTTTATCAAAAACAGTAG-AAAG
195 TATGACTATTCTT-TTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGT-GTAAAG
* ** * * *
1100480 AAAAGCATTTCTTGTGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGTATGCGTTTTTG
258 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
* * * * * * * *
1100545 GTTCCTAAACTTGAAAAGACTGGAGACTGTTACCAGAATC-ACTGCTTGTCTTATTTATGGGGTG
323 GTTCCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGA-TGCTTGTCTTATTTAAGGGATG
* * * *
1100609 AACATTGATTTTATGGAAAATAGGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATAAATATT
387 AACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATAAATATC
*
1100674 ATTTATCCTAATGAGGAGGATGTG
452 ATTTATCCTAATGAGGAGAATGTG
* * *
1100698 TTTATAGTGCCTAATCAAAAAAAGAATGAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGA-
1 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAG
*
1100762 TGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGTCTTTCTTGCAAAACCAAAGCATCA
66 T-CACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATCA
* * * *
1100827 ATATCGTGTATACTTATGAGAATACTATGTTTATGGTGCCTAA-TCTCGGAAAGAATAGTGATTA
130 ATATCATGTATACTTATGAGAATACTATGTTTATGGTGCCTAATTCT-GAAAAGAATGGGGATTA
* * * * * **
1100891 GTATGAATATTCTTTTTTTTCTTATTTAAGAGACAAACTTTGAATCTATTAAAAATGGTGTAAAG
194 GTATGACTATTC-TTTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGTAAAG
*
1100956 AAAAGCTTTTCTTACGACACCAAAGTATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
258 AAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAG
** * * * *
1101021 GTTCCTGATCCTGAAAATAATGGAGATTGTTAAGAGAATCGATGCTTGTCTTCTTTATGGGATGA
323 GTTCCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * * * * *
1101086 ACTTTAATTTTAAGAAAAATAAGGCAAAGGAAATATTTCCTTGCAAAAAAAAAAATCATCAATAT
388 ACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC--AAAAGAAAATCATAAATAT
*
1101151 CATTTATCATAATGAGGAGAATGTG
451 CATTTATCCTAATGAGGAGAATGTG
* ** * *
1101176 TTTATAGTGCCTAACCCCAAAATGAATGAAAATCATTACTAGAATCCATGTTTGTCTCATTTGAA
1 TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCA-TTGGA
* * * *
1101241 G-C-CTGAACTTAGACTCTACAAAAATTGGTGGAAAGAAAGCCTTTCTTGCAAAACCAAAGCTTC
65 GTCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATC
* * * *
1101304 AATATCATGTATCCTTATCG-GAAGACTATGTTTATGGTGCCTAATCCTGAATAGAATGGGGATT
129 AATATCATGTATACTTAT-GAGAATACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATT
* * * * * * * *
1101368 GGTTTGACTCTTCATTTTTGTGTTATTTAAGA-GCTGAGCTTTGATTCTATCAAAAA-ATGGGGG
193 AGTATGACTATTC-TTTTTGTCTTATTTAAGAGGC-AAACTTTGATTCTATCAAAAACA--GTGT
* ** * *
1101431 AAATAAAAGCTTTTCTTGTGACACCAATGCATCAATGTCATGTAT-CTAAAAGAAGGGAATGTGT
254 AAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTGT
* * *
1101495 TTTAGGTTCCCAATCCTGAAAAATAATGGAGACTGTTATGAGAATTGATGCTTCTCTTATTTAAG
318 TTTAGGTTCCCAATCCTG-AAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAG
** * * * *
1101560 GGATGAATTTTGACTATAAGGAAAAT-GGGCCAGGAAAAGATTTCCATGCAAAAGAAA
382 GGATGAACATTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAA
1101617 CTTGAAAGCT
Statistics
Matches: 1161, Mismatches: 192, Indels: 67
0.82 0.14 0.05
Matches are distributed among these distances:
460 48 0.04
461 1 0.00
462 2 0.00
463 83 0.07
464 7 0.01
465 1 0.00
467 1 0.00
468 2 0.00
473 1 0.00
474 3 0.00
475 138 0.12
476 463 0.40
477 12 0.01
478 242 0.21
479 96 0.08
480 61 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (475 bp):
TTTATAGTGCCTAATCAAAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTGGAG
TCACGAACTTAGACTTTACAAAAATTGGTGGGAAGAAAGTCTTTCTTGCAAAACCAAAGCATCAA
TATCATGTATACTTATGAGAATACTATGTTTATGGTGCCTAATTCTGAAAAGAATGGGGATTAGT
ATGACTATTCTTTTTGTCTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAGTGTAAAGAAA
AGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTAGGTT
CCCAATCCTGAAAATAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAACA
TTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTCCATGCAAAAGAAAATCATAAATATCATTT
ATCCTAATGAGGAGAATGTG
Found at i:1102384 original size:20 final size:20
Alignment explanation
Indices: 1102359--1102411 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
1102349 ATTTGAAGTA
1102359 ATGTATCGATACAAT-T-CATC
1 ATGTATCGATACAATGTGC--C
1102379 ATGTATCGATACAATGTGCC
1 ATGTATCGATACAATGTGCC
1102399 ATGTATCGATACA
1 ATGTATCGATACA
1102412 TACAGTGGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
20 29 0.94
21 1 0.03
22 1 0.03
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACAATGTGCC
Found at i:1113839 original size:9 final size:9
Alignment explanation
Indices: 1113827--1113887 Score: 65
Period size: 9 Copynumber: 7.1 Consensus size: 9
1113817 CTCTCTCTAT
1113827 TATCTCTCC
1 TATCTCTCC
1113836 TATCTCTCC
1 TATCTCTCC
* *
1113845 T-CCTAT-C
1 TATCTCTCC
*
1113852 -ATCCCTCC
1 TATCTCTCC
*
1113860 TATCTCTAC
1 TATCTCTCC
1113869 TATCTCTCC
1 TATCTCTCC
1113878 TATCTCTCC
1 TATCTCTCC
1113887 T
1 T
1113888 CCTATCATCC
Statistics
Matches: 41, Mismatches: 8, Indels: 6
0.75 0.15 0.11
Matches are distributed among these distances:
7 3 0.07
8 4 0.10
9 34 0.83
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (9 bp):
TATCTCTCC
Found at i:1113847 original size:12 final size:12
Alignment explanation
Indices: 1113832--1113908 Score: 71
Period size: 12 Copynumber: 6.9 Consensus size: 12
1113822 TCTATTATCT
1113832 CTCCTATCTCTC
1 CTCCTATCTCTC
1113844 CTCCTATCATC-C
1 CTCCTATC-TCTC
1113856 CTCCTA--TCT-
1 CTCCTATCTCTC
*
1113865 CTACTA--TCT-
1 CTCCTATCTCTC
1113874 CTCCTATCTCTC
1 CTCCTATCTCTC
1113886 CTCCTATCATC-C
1 CTCCTATC-TCTC
1113898 CTCCTATCTCT
1 CTCCTATCTCT
1113909 TCTTTCTCTT
Statistics
Matches: 56, Mismatches: 2, Indels: 14
0.78 0.03 0.19
Matches are distributed among these distances:
9 15 0.27
11 5 0.09
12 32 0.57
13 4 0.07
ACGTcount: A:0.13, C:0.47, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:1113854 original size:42 final size:42
Alignment explanation
Indices: 1113799--1113917 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
1113789 TTCTTCTCTC
* * *
1113799 CTCCTCCTGTCATCCCTCCTCTCTCTATTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1113841 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
* *
1113883 CTCCTCCTATCATCCCTCCTATCTCTTCTTTCTCT
1 CTCCTCCTATCATCCCTCCTATCTCTACTATCTCT
1113918 TTGAGGACTG
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 72 1.00
ACGTcount: A:0.11, C:0.45, G:0.01, T:0.43
Consensus pattern (42 bp):
CTCCTCCTATCATCCCTCCTATCTCTACTATCTCTCCTATCT
Found at i:1114675 original size:20 final size:20
Alignment explanation
Indices: 1114647--1114693 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
1114637 AAATGCTGGT
*
1114647 TATTTTTTCCTCTCTTTTTG
1 TATTCTTTCCTCTCTTTTTG
* * *
1114667 TATTCTTTCTTTTTTTTTTG
1 TATTCTTTCCTCTCTTTTTG
1114687 TATTCTT
1 TATTCTT
1114694 GAAAAAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.06, C:0.15, G:0.04, T:0.74
Consensus pattern (20 bp):
TATTCTTTCCTCTCTTTTTG
Found at i:1115984 original size:606 final size:606
Alignment explanation
Indices: 1114830--1116044 Score: 2206
Period size: 606 Copynumber: 2.0 Consensus size: 606
1114820 TGATACCAAT
*
1114830 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGATGTGGATTTCTAACATTAAACA
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGATGTGGATTTCTAACAATAAACA
1114895 GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAATAACAAAATGGAATAAATTAGA
66 GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAATAACAAAATGGAATAAATTAGA
*
1114960 GATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAAAGATCGCCACAAGAGTCTT
131 GATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAAAGATCACCACAAGAGTCTT
1115025 GGCCTCTTGATAAGATCCAGAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAA
196 GGCCTCTTGATAAGATCCAGAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAA
1115090 ATGAGTTTAATCTGCAAATATGAATGTCTGCCCCCCCTCCAAATATGTTTACAAGAGCTTATATA
261 ATGAGTTT-ATCTGCAAATATGAATG-CTGCCCCCCCTCCAAATATGTTTACAAGAGCTTATATA
*
1115155 TGCCCTCATAAGCCATTGTTAACACAAACCCTAAGGGCTTATTATGCTAACAGGCCCAACACTTA
324 TGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGCTTATTATGCTAACAGGCCCAACACTTA
*
1115220 GGTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
389 CGTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCC
1115285 TTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCA
454 TTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCA
1115350 ATTAACTAGCTTGGGCTCCTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
519 ATTAACTAGCTTGGGCTCCTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCATCT
1115415 TCTCTAGGTCTTCCTTTATCCTC
584 TCTCTAGGTCTTCCTTTATCCTC
1115438 TGATGACAACCATGAACCAAGGTTGCCT-AATAATGATCTTGA-GATGGATTTCTAACAATAAAC
1 TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGATG-TGGATTTCTAACAATAAAC
*
1115501 AGAATTATTGATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAAATAACAAAATGGAATAGAATT
65 AGAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAG-AAAAAATAACAAAATGGAATA-AATT
* *
1115566 AGAGATGGAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAATGATCACCACAAGAGT
128 AGAGATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAAAGATCACCACAAGAGT
1115631 CTTGGCCTCTTGATAAGATCCAGAAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
193 CTTGGCCTCTTGATAAGATCCAG-AAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACA
* *
1115696 CAAAATGTGTTT-TCTGCAAATATGAATG-T-CCCCCCCTCCAAATCTGTTTACAAGAGCTTATA
257 CAAAATGAGTTTATCTGCAAATATGAATGCTGCCCCCCCTCCAAATATGTTTACAAGAGCTTATA
*
1115758 TATGCCCTCATAAGCCATAGTTAACACAAACCCTAAGGGGCTTATTATGCTAACAGGCCCAACTC
322 TATGCCCTCATAAGCCATAGTTAACACAAACCCTAA-GGGCTTATTATGCTAACAGGCCCAACAC
*
1115823 TTACTTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGG
386 TTACGTAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGG
*
1115888 CCCTTTATTACAAAATAACCCAAGTCCTAATTGAATCCATTGGAGCCCATATCTTCCAAATATAT
451 CCCTTTATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATAT
* *
1115953 GCAATTAACTAGCTTGGGCTCTTCTAACTCCAGATTGGGTCTACTTTCAAATAGGCCAGCAACCA
516 GCAATTAACTAGCTTGGGCTCCTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCA
1116018 TCTTCTCTAGGTCTTCCTTTATCCTC
581 TCTTCTCTAGGTCTTCCTTTATCCTC
1116044 T
1 T
1116045 TTGCCTTTGC
Statistics
Matches: 588, Mismatches: 14, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
605 67 0.11
606 246 0.42
607 69 0.12
608 65 0.11
609 89 0.15
610 52 0.09
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (606 bp):
TGATGACAACCATGAACCAAGGTTGCCTAAATAATGATCTTGATGTGGATTTCTAACAATAAACA
GAATTATTAATGCAAGAACAGAAATTGAAAGAAGCAGAAAAAATAACAAAATGGAATAAATTAGA
GATGAAGGATGGCGCCACAATCACAAGATTGATAAGCCAAAAGGAAAGATCACCACAAGAGTCTT
GGCCTCTTGATAAGATCCAGAAAATTGGCTCACTCAAGAACCTAAGAATCACACTCTCACACAAA
ATGAGTTTATCTGCAAATATGAATGCTGCCCCCCCTCCAAATATGTTTACAAGAGCTTATATATG
CCCTCATAAGCCATAGTTAACACAAACCCTAAGGGCTTATTATGCTAACAGGCCCAACACTTACG
TAAACCCAAATAACAAGTTTTTATGCTAAATAAAGCCCAAAGCAAGTCACAACCAGCAGGCCCTT
TATTACAAAATAACCCAAGTCCTAATTCAATCCATTGGAGCCCATATCTTCCAAATATATGCAAT
TAACTAGCTTGGGCTCCTCTAACTCCAAATTGGGTCTACTTTCAAATAGGCCAGCAACCATCTTC
TCTAGGTCTTCCTTTATCCTC
Found at i:1116199 original size:92 final size:92
Alignment explanation
Indices: 1116038--1116219 Score: 301
Period size: 92 Copynumber: 2.0 Consensus size: 92
1116028 GTCTTCCTTT
* * * *
1116038 ATCCTCTTTGCCTTTGCCCTCGTTATTGGTCCTTGAAATCCTTCCAACGCCTTCAGGTCTTTGTC
1 ATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTA
1116103 TTCAATGGACCTTCCTTGGTTTTCATC
66 TTCAATGGACCTTCCTTGGTTTTCATC
* *
1116130 ATCCTCTTTGCCTTTGCCCTTGTCATTGGTCCTTGAAACCCTTCCAATGCCTTCAGGTCATTGTA
1 ATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTA
*
1116195 TTCAATGGACCTTGCTTGGTTTTCA
66 TTCAATGGACCTTCCTTGGTTTTCA
1116220 ACAACTTGTT
Statistics
Matches: 83, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
92 83 1.00
ACGTcount: A:0.14, C:0.29, G:0.16, T:0.41
Consensus pattern (92 bp):
ATCCTCTTTGCCTTTGCCCTCGTCATTGGTCCTTGAAACCCTTCCAACGCCTTCAGGTCATTGTA
TTCAATGGACCTTCCTTGGTTTTCATC
Found at i:1117873 original size:13 final size:13
Alignment explanation
Indices: 1117855--1117879 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1117845 CAATTCATCA
1117855 TGTATCGATACAT
1 TGTATCGATACAT
1117868 TGTATCGATACA
1 TGTATCGATACA
1117880 ATGATACAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1118028 original size:22 final size:20
Alignment explanation
Indices: 1118002--1118055 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
1117992 CATCTGGGTG
*
1118002 TGTATCAATACAATGAACATAA
1 TGTATCGATACAA--AACATAA
*
1118024 TGTATCGATACAAAGCATAA
1 TGTATCGATACAAAACATAA
1118044 TGTATCGATACA
1 TGTATCGATACA
1118056 TCTGGGTCTG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 18 0.60
22 12 0.40
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (20 bp):
TGTATCGATACAAAACATAA
Found at i:1118697 original size:15 final size:15
Alignment explanation
Indices: 1118677--1118711 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
1118667 AACCATCAAA
1118677 GATGATGAAGATAAT
1 GATGATGAAGATAAT
*
1118692 GATGATGATGATAAT
1 GATGATGAAGATAAT
1118707 GATGA
1 GATGA
1118712 AGTTGACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.29, T:0.29
Consensus pattern (15 bp):
GATGATGAAGATAAT
Found at i:1127642 original size:13 final size:13
Alignment explanation
Indices: 1127624--1127649 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1127614 CAATTTTTTG
1127624 TGTATCGATACAT
1 TGTATCGATACAT
1127637 TGTATCGATACAT
1 TGTATCGATACAT
1127650 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:1130049 original size:21 final size:21
Alignment explanation
Indices: 1130025--1130071 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
1130015 TTTGATGCTG
1130025 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
1130045 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
1130066 ATTTTG
1 ATTTTG
1130072 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:1130210 original size:13 final size:13
Alignment explanation
Indices: 1130192--1130230 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 13
1130182 ATAATCACCC
*
1130192 TGTATCGATACAG
1 TGTATCGATACAA
1130205 TGTATCGATACAA
1 TGTATCGATACAA
1130218 TGTATCGATACAA
1 TGTATCGATACAA
1130231 AGAAAAATGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1130241 original size:20 final size:20
Alignment explanation
Indices: 1130216--1130294 Score: 77
Period size: 20 Copynumber: 3.7 Consensus size: 20
1130206 GTATCGATAC
1130216 AATGTATCGATACAAAGAAA
1 AATGTATCGATACAAAGAAA
*
1130236 AATGTATCGATACATAGAATTTCCA
1 AATGTATCGATACAAAGAA-----A
* *
1130261 GATGTATCGATACACAGAAA
1 AATGTATCGATACAAAGAAA
*
1130281 CATGTATCGATACA
1 AATGTATCGATACA
1130295 TTTTGGACAT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
20 32 0.64
25 18 0.36
ACGTcount: A:0.44, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
AATGTATCGATACAAAGAAA
Found at i:1132290 original size:15 final size:15
Alignment explanation
Indices: 1132270--1132300 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
1132260 ATTTCGTTTG
*
1132270 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
1132285 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
1132300 G
1 G
1132301 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:1134133 original size:21 final size:21
Alignment explanation
Indices: 1134104--1134148 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
1134094 AAGTTTTCAT
*
1134104 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
1134124 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
1134146 TTT
1 TTT
1134149 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:1137668 original size:476 final size:474
Alignment explanation
Indices: 1136750--1138447 Score: 2052
Period size: 476 Copynumber: 3.6 Consensus size: 474
1136740 CACTCCTCAT
* *
1136750 TAGGAAAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTACTTTCCTTAA
* * *** **
1136815 AATCAAAGTTCATCCCTTAAATAAGACAAGAATCGGTTCTTGTAACAATCTCCATTCCATCCT-A
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATT--ATTTTCA
* * * *
1136879 -GATTGGGAACCAAAAACACATTTCCTTCATTAGGATACTTGAAATTGATGCTTTGGTGTCGCAA
129 GGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAA
* ** * * * * * * * *
1136943 GAAAAGGTTTTCACTCCACCGTTTCTAATAAAATCAAAGCTTACCTCTTAAACATGACAAACATG
194 GAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATG
* * * *
1137008 AATAGTCATACTAATCCCCTTTATTTTTAGGATTAGGCACCATAAACATAGTCTTCTCA-TAAGT
259 AATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAAG-
* * * * *
1137072 ATACAAGATATTGGTGCTTTGGTTTCACAAGAAAGG-TTATTTTCCCACCAA-TTTTAGTAAACT
323 ATACGAGATATTGATG-TTTGGTTTCGCAAGAAAGGCAT-TTTTCCCACCAATTTTTA-TAAAGT
* ** * * * * * * *
1137135 CTAACTTTGTGCCATAAATAAAATAAACATGGATTCTCA-TAGTGATCTTCATTCATTTTATTAC
385 CTAAGTTCATGCCTTAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTATGAT
* *
1137199 TAGGCATTATAAACACATTCTCTTTAG
449 TAAGCACTATAAACACATTCTC-TTAG
* * *
1137226 TAGGATAAATGATATTGACGATTTTTTTTTGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTACTTTCCTTAA
*
1137291 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGG
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTCAGG
* * *
1137356 ATTGGGAACCCAAAACAGATTCCCTTCAATA-GAGTACATGACATTGATGCTTTGGTGTCGCAAG
131 ATTGGGAACCTAAAACACATTCCCTTCATTAGGA-TACATGACATTGATGCTTTGGTGTCGCAAG
* * *
1137420 AAAAGCTTTTTTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTTTTAAATAAGACAAACATGA
195 AAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGA
* * * * * *
1137485 ATAGTCATACTAATCACCATTCTTTTCGGGACTGGGCCCCATAAACATAGTTTTCACATTAAGAT
260 ATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAAGAT
* * * *
1137550 ATGTGATATTGATGTTTAGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTATGATGTCTAA
325 ACGAGATATTGATGTTT-GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGTCTAA
* * * * * * *
1137615 GTTCATGCCTTAAACGAGACAAATATGCATTCTAGTAATTATATTCTTTCATTTTATGATTAAGT
389 GTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGC
* *
1137680 ACTATAAACACATTCTGCTCAA
454 ACTATAAACACATTCT-CTTAG
* * * *
1137702 TAGGATAAAT-ATTATTGATGATTTTC-TTT-CACATAGAAATCTATTCCTTGCCCTATTTTCCT
1 TAGGATAAATGA-TATTGATGATTTTCTTTTGCAC-GA-AAATCTTTTCTTTGCCCTACTTTCCT
* * * **
1137764 TAAAGTCAAAGTTCATCCCATAAATAAGACAAGCATCGATCCTCGTAACAATCTCCATTATTTTC
63 TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTC
* * * *
1137829 AGGATTGGGAACCTAAAATACATTCCTTTCGTTAGGATACATGACATTAATGCTTTGGTGTCGCA
128 AGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCA
* * *
1137894 AAAAAAGCTTTT-TTTCCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAACCA
193 AGAAAAGCTTTTCTTT-CCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACA
* * * * *
1137958 AGAATACTCATACCAATCCCCATTCTTTTCAAGATTAGGCACCATAAACATAGTCTT-ATCTTTA
257 TGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCA-CATTA
* * * * * * *
1138022 GGATACGCGGTATTGATGTTTTGGTTTCGCAAGAATGGCATTTTTCGCTCCAATTTTTGTAAAGT
321 AGATACGAGATATTGATG-TTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGT
* * **
1138087 CTAAGTTCATGCCTCAAATGAGACAAACATGGATTCTAGCAATGATCTTCATTCATTTCGTGATT
385 CTAAGTTCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATT
1138152 AAGCACTATAAACACATTCTCCTTAG
450 AAGCACTATAAACACATTCT-CTTAG
* * * * *
1138178 TCGGATAAAAGATATTGATGATTTTCTTTTGCATGGAAATCTTTTTTTTGCCCTACTTTCCTTAA
1 TAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTACTTTCCTTAA
* * * *
1138243 AATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTTAAAATAGTCTCCATTATTTTCAGG
66 AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTCAGG
** * *
1138308 ATTGGGAACCTAAAACACATTTTCTTCATTAGGATACATGACATTGATGCTTTCGTGTCGTAAGA
131 ATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
* * *
1138373 AAAGCTTTTCTTTGCATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
196 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
1138438 TAGTCATACT
261 TAGTCATACT
1138448 GTTAGGATCT
Statistics
Matches: 1038, Mismatches: 164, Indels: 40
0.84 0.13 0.03
Matches are distributed among these distances:
474 6 0.01
475 16 0.02
476 991 0.95
477 23 0.02
478 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (474 bp):
TAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTACTTTCCTTAA
AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAATCTCCATTATTTTCAGG
ATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGA
AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAA
TAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCACATTAAGATA
CGAGATATTGATGTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTTTATAAAGTCTAAGT
TCATGCCTTAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
TATAAACACATTCTCTTAG
Found at i:1139897 original size:365 final size:365
Alignment explanation
Indices: 1139227--1139959 Score: 1430
Period size: 365 Copynumber: 2.0 Consensus size: 365
1139217 CAAACACTAG
*
1139227 CCTACTTAGAGGCAATTCTTGTTTGTATAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
1 CCTACTTAGAGGCAATTCTTGTTTGTAGAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
1139292 GTCATAATCTCCTAAGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
66 GTCATAATCTCCTAAGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
*
1139357 TTCAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
131 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
1139422 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
196 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
1139487 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
261 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
1139552 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
326 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
1139592 CCTACTTAGAGGCAATTCTTGTTTGTAGAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
1 CCTACTTAGAGGCAATTCTTGTTTGTAGAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
*
1139657 GTCATAATCTCCTAGGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
66 GTCATAATCTCCTAAGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
1139722 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
131 TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
1139787 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
196 GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
*
1139852 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTTTTTTGCACCAAAT
261 ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
1139917 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
326 CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
1139957 CCT
1 CCT
1139960 CTCGGTTTAT
Statistics
Matches: 364, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
365 364 1.00
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (365 bp):
CCTACTTAGAGGCAATTCTTGTTTGTAGAATTTTTTTGTTTACATAAGGTTGTGTTCAACCTTGA
GTCATAATCTCCTAAGAACTTGGGATACAGTTCTTGGAGAGATTGAGAGGTTGTTATCTTAGCCT
TTAAAAGATAAGGTTTGTAAGGTTATACCTTTGCCTTAAAGGTAATCAATTCTTGTAGTGAATTG
GATAACCACTCGATGAGGAAGTATCGAAGAGAGAGGACATAGGTACCAGATTGGATCAAACCTCT
ATAAACTCTTGTGTCGAGCATTTCTTCCTTAATCTTTTTATCTTTCAAATTCTTTTGCACCAAAT
CTTCAAAACACTCAAAATTCAAAAAGAACCAATTCACCCT
Found at i:1142192 original size:20 final size:19
Alignment explanation
Indices: 1142138--1142192 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 19
1142128 AAAACCCTTA
*
1142138 AAAGTATCGATACACAATTC
1 AAAGTATCGATACA-TATTC
1142158 AAAGTATCGATACATATTGC
1 AAAGTATCGATACATATT-C
*
1142178 AATGTATCGATACAT
1 AAAGTATCGATACAT
1142193 GAAAAAGATG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
19 3 0.09
20 29 0.91
ACGTcount: A:0.42, C:0.16, G:0.13, T:0.29
Consensus pattern (19 bp):
AAAGTATCGATACATATTC
Found at i:1142269 original size:19 final size:18
Alignment explanation
Indices: 1142245--1142308 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
1142235 TAGCCAAACT
1142245 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
1142264 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
1142277 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
1142296 TTGTATCGATACA
1 -TGTATCGATACA
1142309 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:1142281 original size:13 final size:13
Alignment explanation
Indices: 1142263--1142288 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1142253 TACACAAAAT
1142263 ATGTATCGATACA
1 ATGTATCGATACA
1142276 ATGTATCGATACA
1 ATGTATCGATACA
1142289 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1142286 original size:32 final size:33
Alignment explanation
Indices: 1142245--1142308 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
1142235 TAGCCAAACT
*
1142245 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1142277 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1142309 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1142809 original size:34 final size:35
Alignment explanation
Indices: 1142746--1142812 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1142736 CTAAGTGATT
1142746 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
1142782 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
1142813 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:1147574 original size:19 final size:18
Alignment explanation
Indices: 1147550--1147613 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
1147540 TAGCCAAACT
1147550 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
1147569 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
1147582 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
1147601 TTGTATCGATACA
1 -TGTATCGATACA
1147614 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:1147586 original size:13 final size:13
Alignment explanation
Indices: 1147568--1147593 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1147558 TACACAAAAT
1147568 ATGTATCGATACA
1 ATGTATCGATACA
1147581 ATGTATCGATACA
1 ATGTATCGATACA
1147594 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1147591 original size:32 final size:33
Alignment explanation
Indices: 1147550--1147613 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
1147540 TAGCCAAACT
*
1147550 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
1147582 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
1147614 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:1148114 original size:34 final size:35
Alignment explanation
Indices: 1148051--1148117 Score: 102
Period size: 37 Copynumber: 1.9 Consensus size: 35
1148041 CTAAGTGATT
1148051 GAGAGGTTCTATCTTAGCCTTTGAAAAAGATAGAGA
1 GAGAGGTTCTATCTTAGCCTTTG-AAAAGATAGAGA
1148087 GAGAGGTTTCTATCTTAGCC-TTG-AAAGATAG
1 GAGAGG-TTCTATCTTAGCCTTTGAAAAGATAG
1148118 TGTTGTAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
34 8 0.27
36 9 0.30
37 13 0.43
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (35 bp):
GAGAGGTTCTATCTTAGCCTTTGAAAAGATAGAGA
Found at i:1152186 original size:31 final size:31
Alignment explanation
Indices: 1152104--1152281 Score: 153
Period size: 31 Copynumber: 5.6 Consensus size: 31
1152094 TCTTTTCTAT
* *
1152104 GTCCACGACTTAGTGGCATCCTTTTCTT-CAAA
1 GTCCATGACTCAGTGGCAT-CTTTT-TTCCAAA
* ** *
1152136 ATCCACAACTCAGTGGCATCTCTTTTCCAAA
1 GTCCATGACTCAGTGGCATCTTTTTTCCAAA
* *
1152167 GTTCATGACTCAGTAGCATCTTTTCTT-CAAA
1 GTCCATGACTCAGTGGCATCTTTT-TTCCAAA
* *
1152198 GTCCATGACTTAGTGGCATTTTTTTTCCTCAAA
1 GTCCATGACTCAGTGGCATCTTTTTT-C-CAAA
* *
1152231 GTCCACGACTCAGTGGCATCTTTTTTTTTCAAA
1 GTCCATGACTCAGTGGCATC--TTTTTTCCAAA
* *
1152264 GTCCACGACTCCGTGGCA
1 GTCCATGACTCAGTGGCA
1152282 CCCTTTAAAG
Statistics
Matches: 120, Mismatches: 19, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
30 4 0.03
31 50 0.42
32 18 0.15
33 42 0.35
35 6 0.05
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (31 bp):
GTCCATGACTCAGTGGCATCTTTTTTCCAAA
Found at i:1152230 original size:33 final size:33
Alignment explanation
Indices: 1152104--1152281 Score: 179
Period size: 33 Copynumber: 5.5 Consensus size: 33
1152094 TCTTTTCTAT
* *
1152104 GTCCACGACTTAGTGGCA-TCCTTTTCTTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * *
1152136 ATCCACAACTCAGTGGCATCTCTTTTC--CAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * *
1152167 GTTCATGACTCAGTAGCA--TCTTTTCTTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
* * * *
1152198 GTCCATGACTTAGTGGCATTTTTTTTCCTCAAA
1 GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
*
1152231 GTCCACGACTCAGTGGCATCTT-TTTTTTTCAAA
1 GTCCACGACTCAGTGGCAT-TTCTTTTCTTCAAA
*
1152264 GTCCACGACTCCGTGGCA
1 GTCCACGACTCAGTGGCA
1152282 CCCTTTAAAG
Statistics
Matches: 120, Mismatches: 20, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
29 7 0.06
31 36 0.30
32 15 0.12
33 60 0.50
34 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.15, T:0.35
Consensus pattern (33 bp):
GTCCACGACTCAGTGGCATTTCTTTTCTTCAAA
Found at i:1152352 original size:33 final size:32
Alignment explanation
Indices: 1152310--1152616 Score: 205
Period size: 33 Copynumber: 9.9 Consensus size: 32
1152300 TTTGTGGCAT
1152310 CCTTTTAAGTCCACAACTCCGTGGCACCTTGTC
1 CCTTTTAAGTCCACAACTCCGTGGCACCTT-TC
* *
1152343 CCTTTTAAGTCCACAACTCCATGGCATCTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTC
* ** *
1152376 CTTTTTAAGTCCACAACTCTATGGCACCTTGTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTT-TC
* *
1152409 CCTTTTAAGTCCACAACTCCGTAGCACCTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTC
* * ** *
1152441 CTTTTTACGTCCATGACTCTGTGGCA-----C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTC
* *
1152468 CCTTTTAAGCCCATAACTCCGTGGCACTCTTTTTC
1 CCTTTTAAGTCCACAACTCCGTGGCAC-C--TTTC
* *
1152503 CC-TTTAAGTCCATAACTCAGTGGCA-----C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTC
* * *
1152529 CCTTTTAAATCCATAACTCTGTGGCA-----C
1 CCTTTTAAGTCCACAACTCCGTGGCACCTTTC
* *
1152556 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTCCGTGGCA-CCTTTC
* * * *
1152589 CCTTTTAAGCCCATAAGTCAGTGGCACC
1 CCTTTTAAGTCCACAACTCCGTGGCACC
1152617 CCTTTCAAAG
Statistics
Matches: 222, Mismatches: 35, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
26 3 0.01
27 66 0.30
32 26 0.12
33 100 0.45
34 24 0.11
35 3 0.01
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (32 bp):
CCTTTTAAGTCCACAACTCCGTGGCACCTTTC
Found at i:1152387 original size:66 final size:66
Alignment explanation
Indices: 1152312--1152529 Score: 236
Period size: 66 Copynumber: 3.4 Consensus size: 66
1152302 TGTGGCATCC
* *
1152312 TTTTAAGTCCACAACTCCGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCATGGCATCTTTTCC
1 TTTTAAGTCCACAACTCTGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTTCC
1152377 T
66 T
* * * *
1152378 TTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTAGCACCTTTT-C
1 TTTTAAGTCCACAACTCTGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTTCC
1152442 T
66 T
* ** * *
1152443 TTTTACGTCCATGACTCTGTGGCA------CCCTTTTAAGCCCATAACTCCGTGGCACTCTTTTT
1 TTTTAAGTCCACAACTCTGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCA-TC-TTTT
1152502 CC-
64 CCT
* * *
1152504 CTTTAAGTCCATAACTCAGTGGCACC
1 TTTTAAGTCCACAACTCTGTGGCACC
1152530 CTTTTAAATC
Statistics
Matches: 128, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
59 23 0.18
60 1 0.01
61 24 0.19
62 1 0.01
65 22 0.17
66 57 0.45
ACGTcount: A:0.20, C:0.32, G:0.13, T:0.35
Consensus pattern (66 bp):
TTTTAAGTCCACAACTCTGTGGCACCTTGTCCCTTTTAAGTCCACAACTCCGTGGCATCTTTTCC
T
Found at i:1152405 original size:27 final size:27
Alignment explanation
Indices: 1152262--1152588 Score: 143
Period size: 27 Copynumber: 11.0 Consensus size: 27
1152252 TTTTTTTTCA
* * *
1152262 AAGTCCACGACTCCGTGGCACCCTTTA
1 AAGTCCACAACTCCGTGGCACCTTTTT
* **
1152289 AAGCCCACAACTTTGTGGCATCC-TTTT
1 AAGTCCACAACTCCGTGGCA-CCTTTTT
1152316 AAGTCCACAACTCCGTGGCACCTTGTCCCTTTT
1 AAGTCCACAACTCCGTGGCACC---T---TTTT
*
1152349 AAGTCCACAACTCCATGGCATCTTTTCCTTTTT
1 AAGTCCACAACTCCGTGGCA------CCTTTTT
**
1152382 AAGTCCACAACTCTATGGCACCTTGTTCCTTTT
1 AAGTCCACAACTCCGTGGCACC----T--TTTT
*
1152415 AAGTCCACAACTCCGTAGCACCTTTTCTTTTT
1 AAGTCCACAACTCCGTGGCA-C----CTTTTT
* ** * *
1152447 ACGTCCATGACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
* *
1152474 AAGCCCATAACTCCGTGGCACTCTTTTTCCCTTT
1 AAGTCCACAACTCCGTGGCAC-C---TT---TTT
* * *
1152508 AAGTCCATAACTCAGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
* * * *
1152535 AAATCCATAACTCTGTGGCACCCTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
*
1152562 AAGTCCACAACTCCGTGGCATCTTTTT
1 AAGTCCACAACTCCGTGGCACCTTTTT
1152589 CCTTTTAAGC
Statistics
Matches: 234, Mismatches: 34, Indels: 64
0.70 0.10 0.19
Matches are distributed among these distances:
26 2 0.01
27 110 0.47
28 3 0.01
30 1 0.00
31 3 0.01
32 19 0.08
33 68 0.29
34 24 0.10
36 1 0.00
38 1 0.00
39 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.33
Consensus pattern (27 bp):
AAGTCCACAACTCCGTGGCACCTTTTT
Found at i:1152527 original size:61 final size:60
Alignment explanation
Indices: 1152342--1152561 Score: 194
Period size: 61 Copynumber: 3.6 Consensus size: 60
1152332 GGCACCTTGT
* * * * *
1152342 CCCTTTTAAGTCCACAACTCCATGGCATC-TTTTCCTTTTTAAGTCCACAACTCTA-TGGCA
1 CCCTTTTAAGTCCATAACTCCGTGGCACCTTTTTCC-CTTTAAGTCCATAACTC-AGTGGCA
* * ** * * *
1152402 CCTTGTTCCTTTTAAGTCCACAACTCCGTAGCACC-TTTTCTTTTTACGTCCATGACTCTGTGGC
1 -C-----CCTTTTAAGTCCATAACTCCGTGGCACCTTTTTCCCTTTAAGTCCATAACTCAGTGGC
1152466 A
60 A
*
1152467 CCCTTTTAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAGTGGCA
1 CCCTTTTAAGTCCATAACTCCGTGGCAC-CTTTTTCCCTTTAAGTCCATAACTCAGTGGCA
* * *
1152528 CCCTTTTAAATCCATAACTCTGTGGCACCCTTTT
1 CCCTTTTAAGTCCATAACTCCGTGGCACCTTTTT
1152562 AAGTCCACAA
Statistics
Matches: 131, Mismatches: 20, Indels: 17
0.78 0.12 0.10
Matches are distributed among these distances:
59 24 0.18
60 6 0.05
61 51 0.39
64 1 0.01
65 19 0.15
66 30 0.23
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (60 bp):
CCCTTTTAAGTCCATAACTCCGTGGCACCTTTTTCCCTTTAAGTCCATAACTCAGTGGCA
Found at i:1152531 original size:26 final size:27
Alignment explanation
Indices: 1152505--1152617 Score: 118
Period size: 27 Copynumber: 4.0 Consensus size: 27
1152495 TCTTTTTCCC
1152505 TTTAAGTCCATAACTCAGTGGCACCCT
1 TTTAAGTCCATAACTCAGTGGCACCCT
* *
1152532 TTTAAATCCATAACTCTGTGGCACCCT
1 TTTAAGTCCATAACTCAGTGGCACCCT
* *
1152559 TTTAAGTCCACAACTCCGTGGCATCTTTTTCCT
1 TTTAAGTCCATAACTCAGTGGCA-C-----CCT
* *
1152592 TTTAAGCCCATAAGTCAGTGGCACCC
1 TTTAAGTCCATAACTCAGTGGCACCC
1152618 CTTTCAAAGC
Statistics
Matches: 71, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
27 47 0.66
28 1 0.01
32 1 0.01
33 22 0.31
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (27 bp):
TTTAAGTCCATAACTCAGTGGCACCCT
Found at i:1152620 original size:88 final size:88
Alignment explanation
Indices: 1152378--1152621 Score: 292
Period size: 88 Copynumber: 2.7 Consensus size: 88
1152368 ATCTTTTCCT
** * * * * * *
1152378 TTTTAAGTCCACAACTCTATGGCACCTTGTTCCTTTTAAGTCCACAACTCCGTAGCACCTTTTCT
1 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACC----CC
** *
1152443 TTTTACGTCCATGACTCTGTGGCACCC
62 TTTTAAATCCATAACTCTGTGGCACCC
* * *
1152470 TTTTAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTAAGTCCATAACTCAGTGGCA-CCCTTT
1 TTTTAAGTCCACAACTCCGTGGCA-TCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTT
1152534 TAAATCCATAACTCTGTGGCACCC
65 TAAATCCATAACTCTGTGGCACCC
* *
1152558 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGCCCATAAGTCAGTGGCACCCCTTT
1 TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTT
1152622 CAAAGCCCAC
Statistics
Matches: 131, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
87 30 0.23
88 53 0.40
92 21 0.16
93 27 0.21
ACGTcount: A:0.21, C:0.31, G:0.13, T:0.35
Consensus pattern (88 bp):
TTTTAAGTCCACAACTCCGTGGCATCTTTTTCCTTTTAAGTCCATAACTCAGTGGCACCCCTTTT
AAATCCATAACTCTGTGGCACCC
Found at i:1152648 original size:28 final size:29
Alignment explanation
Indices: 1152595--1152689 Score: 106
Period size: 29 Copynumber: 3.3 Consensus size: 29
1152585 TTTTCCTTTT
* *
1152595 AAGCCCATAAGTCAGTGGCACCCCTTTC-A
1 AAGCCCACAAGTCAGTGGCA-ACCTTTCAA
1152624 AAGCCCACAAGTCAGTGGCAACC-TTCAA
1 AAGCCCACAAGTCAGTGGCAACCTTTCAA
* **
1152652 AAGCACACAAGTTGGT-GCAACCTTTTCAA
1 AAGCCCACAAGTCAGTGGCAACC-TTTCAA
1152681 AAGCCCACA
1 AAGCCCACA
1152690 CAAGTTGGTG
Statistics
Matches: 57, Mismatches: 6, Indels: 6
0.83 0.09 0.09
Matches are distributed among these distances:
27 9 0.16
28 16 0.28
29 32 0.56
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.18
Consensus pattern (29 bp):
AAGCCCACAAGTCAGTGGCAACCTTTCAA
Found at i:1152775 original size:49 final size:49
Alignment explanation
Indices: 1152706--1153134 Score: 391
Period size: 49 Copynumber: 8.8 Consensus size: 49
1152696 GGTGGCATCT
*
1152706 TCTTCTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
1 TCTT-TAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* *
1152756 TCTTTAAGACCAATGTCGCTGGCCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * *
1152804 TCTTTAAAACCCAATGTCGCTGGCCTTGAATCAGCACATTGG------TA
1 TCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
*
1152848 ----TAAG-CCTAATATCGCTGGCCTTGAATCAGCATATTGGCACC-TTG
1 TCTTTAAGACC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * * ** **
1152892 TCTTTAAGACCAATGTCACTGGCCTTGAATCAGCACATCAGCACCTCAACCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT---TTA
* * * *
1152944 TCTTTAAGCCCAATATCGCTGACCTTGAATCAGCATATTGGCA-CGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* * * * * *
1152992 TCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACAATGGTACCTTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
* *
1153041 TCTTTAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTCGTCA
1 TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT--T-A
* * * * *
1153093 TCTTTAAAACCCAATATTGTTGGCCGTGAATCAGCGTATTGG
1 TCTTTAAGA-CCAATATCGCTGGCCTTGAATCAGCATATTGG
1153135 TCCTTTTATC
Statistics
Matches: 313, Mismatches: 45, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
38 2 0.01
39 28 0.09
40 3 0.01
44 2 0.01
48 82 0.26
49 118 0.38
50 4 0.01
51 1 0.00
52 44 0.14
53 29 0.09
ACGTcount: A:0.26, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
TCTTTAAGACCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTA
Found at i:1152936 original size:48 final size:48
Alignment explanation
Indices: 1152855--1153086 Score: 266
Period size: 48 Copynumber: 4.7 Consensus size: 48
1152845 GTATAAGCCT
* ** *
1152855 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCC
* * ** *
1152903 AATGTCACTGGCCTTGAATCAGCACATCAGCACCTCAACCATCTTTAAGCCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCT----CATCTTTAAGTCC
* * *
1152955 AATATCGCTGACCTTGAATCAGCATATTGGCACGTCATCTTTAAGTCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCC
* * *
1153003 AATGTCGCTGGCCTTGAATCAGCACAATGGTACCTTCATCTTTAAGTCC
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCC
* *
1153052 AATATTGCTGGCCTTGAATCAGCATATTGGCACCT
1 AATATCGCTGGCCTTGAATCAGCACATTGGCACCT
1153087 TCGTCATCTT
Statistics
Matches: 152, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
48 71 0.47
49 43 0.28
52 38 0.25
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (48 bp):
AATATCGCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCC
Found at i:1153021 original size:100 final size:97
Alignment explanation
Indices: 1152848--1153086 Score: 327
Period size: 100 Copynumber: 2.4 Consensus size: 97
1152838 CACATTGGTA
* **
1152848 TAAGCCTAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCACTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
1152913 GCCTTGAATCAGCAC-ATCAGCACCTCAACCATCTT
66 GCCTTGAATCAGCACAAT-AGCACCT---CCATCTT
* * * *
1152948 TAAGCCCAATATCGCTGACCTTGAATCAGCATATTGGCACGTCATCTTTAAGTCCAATGTCGCTG
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
* * *
1153013 GCCTTGAATCAGCACAATGGTACCTTCATCTT
66 GCCTTGAATCAGCACAATAGCACCTCCATCTT
* *
1153045 TAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCT
1 TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCT
1153087 TCGTCATCTT
Statistics
Matches: 124, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
97 44 0.35
100 78 0.63
101 2 0.02
ACGTcount: A:0.26, C:0.27, G:0.17, T:0.29
Consensus pattern (97 bp):
TAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTCATCTTTAAGACCAATGTCACTG
GCCTTGAATCAGCACAATAGCACCTCCATCTT
Found at i:1153710 original size:19 final size:19
Alignment explanation
Indices: 1153686--1153748 Score: 84
Period size: 19 Copynumber: 3.6 Consensus size: 19
1153676 AAATAGTAAC
1153686 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1153705 TGTATCGAT--ATAA----
1 TGTATCGATACATAAGTGT
1153718 TGTATCGATACATAAGTGT
1 TGTATCGATACATAAGTGT
1153737 TGTATCGATACA
1 TGTATCGATACA
1153749 ATGTATCGTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 9 0.24
15 4 0.11
17 4 0.11
19 21 0.55
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (19 bp):
TGTATCGATACATAAGTGT
Found at i:1153727 original size:32 final size:32
Alignment explanation
Indices: 1153686--1153765 Score: 135
Period size: 32 Copynumber: 2.5 Consensus size: 32
1153676 AAATAGTAAC
*
1153686 TGTATCGATACATAAGTGTTGTATCGATATAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
1153718 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
*
1153750 TGTATCGTTACA-AAGT
1 TGTATCGATACATAAGT
1153766 TACTGCCAAG
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 4 0.09
32 42 0.91
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:1157436 original size:13 final size:13
Alignment explanation
Indices: 1157418--1157443 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
1157408 TATACCAAGT
1157418 ATGTATCGATACA
1 ATGTATCGATACA
1157431 ATGTATCGATACA
1 ATGTATCGATACA
1157444 CCAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:1157441 original size:32 final size:33
Alignment explanation
Indices: 1157400--1157463 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
1157390 TAGCCAAACT
* **
1157400 TGTATCGATATACCAAGTA-TGTATCGATACAA
1 TGTATCGATACACCAAAAATTGTATCGATACAA
1157432 TGTATCGATACACCAAAAATTGTATCGATACA
1 TGTATCGATACACCAAAAATTGTATCGATACA
1157464 TTGGCTTGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 16 0.57
33 12 0.43
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACCAAAAATTGTATCGATACAA
Found at i:1158941 original size:13 final size:13
Alignment explanation
Indices: 1158919--1158958 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
1158909 ACAATGTTCT
1158919 TTGTATCGATACA
1 TTGTATCGATACA
*
1158932 TTGTACCGATACA
1 TTGTATCGATACA
* *
1158945 ATATATCGATACA
1 TTGTATCGATACA
1158958 T
1 T
1158959 GGGTTACTAT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.35
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1160452 original size:33 final size:33
Alignment explanation
Indices: 1160410--1160473 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 33
1160400 CGAGAGTTGA
*
1160410 TCACTTCACTTTCGCAGCACATGAATGAGCACT
1 TCACTTCACTCTCGCAGCACATGAATGAGCACT
* *
1160443 TCACTTCACTCTCGTAGCACATGGATGAGCA
1 TCACTTCACTCTCGCAGCACATGAATGAGCA
1160474 TTTTAGTGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.27
Consensus pattern (33 bp):
TCACTTCACTCTCGCAGCACATGAATGAGCACT
Found at i:1161423 original size:13 final size:13
Alignment explanation
Indices: 1161405--1161431 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
1161395 TCATTATGCT
1161405 TTGTATCGATACA
1 TTGTATCGATACA
1161418 TTGTATCGATACA
1 TTGTATCGATACA
1161431 T
1 T
1161432 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:1161440 original size:19 final size:20
Alignment explanation
Indices: 1161416--1161471 Score: 87
Period size: 19 Copynumber: 2.9 Consensus size: 20
1161406 TGTATCGATA
*
1161416 CATTGTATCGATACATG-TT
1 CATTGTATCGATACATGCAT
1161435 CATTGTATCGATACATGCAT
1 CATTGTATCGATACATGCAT
*
1161455 AATTGTATCGATACATG
1 CATTGTATCGATACATG
1161472 AAATTGGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
19 17 0.50
20 17 0.50
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (20 bp):
CATTGTATCGATACATGCAT
Found at i:1161461 original size:20 final size:19
Alignment explanation
Indices: 1161412--1161477 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 19
1161402 GCTTTGTATC
1161412 GATACATTGTATCGATACAT
1 GATA-ATTGTATCGATACAT
* *
1161432 GTTCATTGTATCGATACAT
1 GATAATTGTATCGATACAT
1161451 GCATAATTGTATCGATACAT
1 G-ATAATTGTATCGATACAT
1161471 GA-AATTG
1 GATAATTG
1161478 GAAGTAGCTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
18 5 0.12
19 17 0.41
20 19 0.46
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (19 bp):
GATAATTGTATCGATACAT
Found at i:1163094 original size:151 final size:151
Alignment explanation
Indices: 1162886--1163185 Score: 458
Period size: 151 Copynumber: 2.0 Consensus size: 151
1162876 AGTTTGTGCC
* * * *
1162886 TCAAATGAGATAAATATGGATTCTCGTAACGATCTTCATTCATTTTATGATTAAGCACTATTAAC
1 TCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAAC
1162951 ACATTCTCCTCAGTAGGATAAATA-ATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
66 ACATTCTCCTCAGTAGGATAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
*
1163015 CCTATTTTTCTTAAAATCAATA
130 CCTATTTTCCTTAAAATCAATA
* * * *
1163037 TCAAATTAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAAC
1 TCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * * *
1163102 ATATTTTCTTTAGTAGGATAAATAGAATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATAGAATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
*
1163167 CTATTTTCCTTAGAATCAA
131 CTATTTTCCTTAAAATCAA
1163186 AGTTCATCCC
Statistics
Matches: 134, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
151 133 0.99
152 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (151 bp):
TCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTCTCCTCAGTAGGATAAATAGAATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAAATCAATA
Found at i:1163614 original size:627 final size:627
Alignment explanation
Indices: 1162417--1163661 Score: 1750
Period size: 627 Copynumber: 2.0 Consensus size: 627
1162407 GCCTCAATCA
*
1162417 AGACAAACTTGGATTCTAGTAATGATGCTCTTTCATTTTATGATTAGGCACTATAAACAAATTCT
1 AGACAAACTTGGATTCTAGTAATGATGCTCTTTCATTTTATGATTAAGCACTATAAACAAATTCT
* * * * *
1162482 CCTCAATATGATAAATAGTATTGATGATTTTCTTTTGCATGAAAATTTTTTCTTTGCCTTATTTT
66 CCTCAATAGGATAAATAGAATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTT
* *
1162547 CCTTAAAGTCAAAGTTCACCCCATAAATAAGACAAGCATAAATCCTCATAATCGTCTCCATTTGT
131 CCTTAAAGTCAAAGTTCACCCCATAAATAAGACAAGCATAAATCCTCATAAACGTCTCAATTTGT
*
1162612 TTCAAGATTGGGAACCTAAAACGCATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
196 TTCAAGATTGGGAACCTAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
* *
1162677 GCAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATTAAAGTTCATCTCTTAAATAAGACAAA
261 ACAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATGAAAGTTCATCTCTTAAATAAGACAAA
* * * **
1162742 CTTGAATACTCCTACTAATCCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTTTCTTT
326 CTTGAATACTCATACCAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCACTTT
* * * * *
1162807 AAGATATGCGAAACTGATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCTACTAATTTTGGTAAAG
391 AAGATACGCGAAACTGATGCTTTGGTTTCGCAAGAAAGACATTTTTCCCACCAATTTTGGTAAAG
* * * ** * *
1162872 TCTAAGTTTGTGCCTCAAATGAGATAAATATGGATTCTCGTAACGATCTTCATTCATTTTATGAT
456 TCTAAGTTCGTGCCTCAAATAAGACAAATAAAGATTCTAGTAACGACCTTCATTCATTTTATGAT
* * * *** *
1162937 TAAGCACTATTAACACATTCTCCTCAGTAGGATAAATAATATTGATGATTTTCTTTTGCATGGAA
521 TAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATAATACAAATGATTTTCTTATGCATGGAA
*
1163002 ATCTTTTCTTTACCCTATTTTTCTTAAAATCAATATCAAATT
586 ATCTTTTCTTTACCCTATTTTCCTTAAAATCAATATCAAATT
*
1163044 AGACAAACATT-GATTCTAGTAATGAT-CTTCTTTCATTTTATGATTAAGCACTATAAACATATT
1 AGACAAAC-TTGGATTCTAGTAATGATGC-TCTTTCATTTTATGATTAAGCACTATAAACAAATT
* * * * *
1163107 TTCTTTAGTAGGATAAATAGAATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATT
64 CTCCTCAATAGGATAAATAGAATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATT
* * * * ** *
1163172 TTCCTTAGAA-TCAAAGTTCATCCCTTAAATAAGATAGGCATCGATTCTCA-AAACAGTCTCAAT
129 TTCCTTA-AAGTCAAAGTTCACCCCATAAATAAGACAAGCATAAATCCTCATAAAC-GTCTCAAT
* * *
1163235 TAT-TTTCAGGATTGGGAACCTAAAACATATTCTTTTCATTAGGATACATGACATTGATGCTTTG
192 T-TGTTTCAAGATTGGGAACCTAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTG
* * **
1163299 GTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATGAAAGTTTTTCTCTTAAATAAG
256 GTGTCACAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATGAAAGTTCATCTCTTAAATAAG
* * *
1163364 ACAAACTTGAATACTCATACCAATCCCCATTCCTTT-CAATATTGGGGACCATAAACATAGTCTT
321 ACAAACTTGAATACTCATACCAATCCCCATT-CTTTCCAAGATTAGGCACCATAAACATAGTCTT
*
1163428 CACTTTAAGATACGC-AATATTGATGCTTTGGTTTCGCAAGAACA-ACATTTTTCCCACCAATTT
385 CACTTTAAGATACGCGAA-ACTGATGCTTTGGTTTCGCAAGAA-AGACATTTTTCCCACCAATTT
* * * *
1163491 TTGTAAAGTTTAAGTTCGTGCCTTAAATAAGACAAATAAAGATTCTAGTAATGACCTTCATTCAT
448 TGGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAATAAAGATTCTAGTAACGACCTTCATTCAT
* * *
1163556 TTTCTGATTAAGAACTATAAACACATTCTCCTCGGTAGGAAAAATGATACAAATGATTTTCTTAT
513 TTTATGATTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATAATACAAATGATTTTCTTAT
*
1163621 GCATGGAAATTTTTTCTTTACCCTATTTTCCTTAAAATCAA
578 GCATGGAAATCTTTTCTTTACCCTATTTTCCTTAAAATCAA
1163662 AGTTCACCCC
Statistics
Matches: 542, Mismatches: 68, Indels: 16
0.87 0.11 0.03
Matches are distributed among these distances:
626 6 0.01
627 526 0.97
628 10 0.02
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.38
Consensus pattern (627 bp):
AGACAAACTTGGATTCTAGTAATGATGCTCTTTCATTTTATGATTAAGCACTATAAACAAATTCT
CCTCAATAGGATAAATAGAATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTATTTT
CCTTAAAGTCAAAGTTCACCCCATAAATAAGACAAGCATAAATCCTCATAAACGTCTCAATTTGT
TTCAAGATTGGGAACCTAAAACACATTCTCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
ACAAGAAAAGCTTTTTTTTCCACCATTTTTGATAGAATGAAAGTTCATCTCTTAAATAAGACAAA
CTTGAATACTCATACCAATCCCCATTCTTTCCAAGATTAGGCACCATAAACATAGTCTTCACTTT
AAGATACGCGAAACTGATGCTTTGGTTTCGCAAGAAAGACATTTTTCCCACCAATTTTGGTAAAG
TCTAAGTTCGTGCCTCAAATAAGACAAATAAAGATTCTAGTAACGACCTTCATTCATTTTATGAT
TAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATAATACAAATGATTTTCTTATGCATGGAA
ATCTTTTCTTTACCCTATTTTCCTTAAAATCAATATCAAATT
Found at i:1165375 original size:951 final size:947
Alignment explanation
Indices: 1163037--1165382 Score: 2891
Period size: 951 Copynumber: 2.5 Consensus size: 947
1163027 AAAATCAATA
* *
1163037 TCAAATTAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAAC
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * *
1163102 ATATTTTCTTTAGTAGGATAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
66 ACATTTTCCTCAGTAGGATAAAT-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
* *
1163166 CCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGATAGGCATCGATTCTCAAAACAGTCT
130 CCTATTTTCCTTA-AATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* *
1163231 CAATTATTTTCAGGATTGGGAACCTAAAACATA-TTCTTTTCATTAGGATACATGACATTGATGC
194 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTC-TTTCATTAAGATACATGACATTGATGC
* * * *
1163295 TTTGGTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATGAAAGTTTTTCTCTTAAA
258 TTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAA
* * * * * * * *
1163360 TAAGACAAACTTGAATACTCATACCAATCCCCATTCCTTTCAATATTGGGGACCATAAACATAGT
323 TAAGACAAACATGAATAGTCATACTAAT-CCCATTCTTTTTAAGATTAGGCACCATAAACATAGT
* * * * * *
1163425 CTTCACTTTAAGATACGCAATATTGATGCTTTGGTTTCGCAAGAACA-ACATTTTTCCCACCAAT
387 CTTCTCATT-AGATATGCAATATTGATGCTTTGGTTTCGTAAGAA-AGGCATTTTT-CCACAAAT
* * * * ** * * ** *
1163489 TTTTGTAAAGTTTAAGTTCGTGCCTTAAATAAGACAAATAAAGATTCTAGTAATGACCTTCATTC
449 TTTAGTAAACTCTAAGTTCATGCCACAAACAAGACAAACAAAGATTCTAGTAACAACCTTCATGC
* *
1163554 ATTTTCTGATTAAGAACTATAAACACATTCTCCTCGGTAGGAAAAATGATACAAATGATTTTCTT
514 ATTTTCTGACTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGATTTTCTT
* * *
1163619 ATGCATGGAAATTTTTTCTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACA
579 ATGCATGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACA
* * * *
1163684 AGCATCGATTCTCTAAATAGTCTCCATTATTTTCAGGACTAGGAACCTCAAACACATTCCTTTCA
644 AGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATTCCCTTCA
* *
1163749 TTAGGATATATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTTTTTCCACTGTTTTTGA
709 TTAGGATACATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACTGTTTTTGA
* *** * *
1163814 TAGAATCAAAATTTTTCTCTTAAAAAAGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTC
774 TAGAATCAAAACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTC
* * *
1163879 AGGATTTGGCACCATAAACATAGTCTTCTCGTAAGGATACACCATATTGATGCTTTGGTTTCATA
839 AGGATTAGGCACCATAAACAAAGTCTTCTCGTAAGGATACACCATATTAATGCTTTGGTTTCATA
* * * ** *
1163944 TGACATTTCTTCCCACCATTTTTTGTAAAATCTACGTTTGTGTC
904 TGACAATTCTTCCCACCATTTCTTGTAAAATCTAAGTTCATGCC
* * *
1163988 TTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-AGACACTATAAA
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAG-CACTATAAA
* * *
1164052 TACATTTTCCTCA-TCAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
65 CACATTTTCCTCAGT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA
* ** *
1164116 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTCTCGTAACAATC
129 CCCTATTTTCCTT-AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTC
** * * *
1164181 TCCAATCCTTCTT-A-GATTGGGAACCAAAAACACATTCCTTTCGTTAAGATACATGACATTGAT
193 T-CAATTATT-TTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGAT
* * * ** * * *
1164244 GCTTTGGGGTCCTAAGAAAAGGTTTTCACTCCACCGTTTCTAATCA-AATCAAAGTTTGCCTCTT
256 GCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGA-CAGAATCAAAGTTTGTCTCTT
* * *
1164308 AAATAGGGCAAACATGAATAGTCATACTAATCCC-TTTTATTTTCAAGATTAGGCACCATAAACA
320 AAATAAGACAAACATGAATAGTCATACTAATCCCATTCT-TTTT-AAGATTAGGCACCATAAACA
* * **
1164372 TAGTCTTCTCATTAG-TATACATGATACTGGCGCTTTGGTTTC-TCAAGAAAGGCATTTTTCCAC
383 TAGTCTTCTCATTAGATATGCA--ATATTGATGCTTTGGTTTCGT-AAGAAAGGCATTTTTCCAC
* * *
1164435 AAATTTTAGTAAACTCTAAGTTCATGCCACAAACCAA-ACAAACATAGATTCTAGTAGCAATCTT
445 AAATTTTAGTAAACTCTAAGTTCATGCCACAAA-CAAGACAAACAAAGATTCTAGTAACAACCTT
* * * * * * ***
1164499 CATGCATTTTGTGGCTAGGCACTATAAACACATTCTCCTTAGTAGGATAAATGATATTGATGATT
509 CATGCATTTTCTGACTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGA-T
* * * * *
1164564 TTTTTTTTGCATGAAAATCTTTACTTTGCCCTATTTTCCTTAAAAT-AGAAGTTCATCCCTTAAA
573 TTTCTTATGCATGAAAATCTTTACTTTACCCTATTTTCCTTAAAATCA-AAGTTCACCCCTCAAA
* * * * * *
1164628 TAAGATAAGCATCGATTCTCAAAACAGTCTCTATTATTTTCAGGATTGGGAACCTAAAACATATT
637 AAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATT
* **
1164693 CCCTTCATTAGGATACATGACATTGATTCTTTGGTGTCGCAAG-AAAAGC-TTTTCTTTCCA-TC
702 CCCTTCATTAGGATACATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACT-
* *
1164755 GTTTTTGATAGAATCAAAGCTCGCCTCTTAAATAAGACAAACATGAATACTCAAACCAATCCCCA
766 GTTTTTGATAGAATCAAAACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCA
* * * ** * *
1164820 TTCTTTTTAGGATTAGTCACCATAAACAAAGTCTTCTCTTTAA-GATATGCGATATTAATGTTTT
831 TTCTTTTCAGGATTAGGCACCATAAACAAAGTCTTCTC-GTAAGGATACACCATATTAATGCTTT
* *
1164884 GGTTTTGCA-A-GACAGGCATT-TTCCCACCGA-TTCTTGTAAAGTTTAAGTTCATGCC
895 GG-TTT-CATATGACA---ATTCTTCCCACC-ATTTCTTGTAAAATCTAAGTTCATGCC
* * * *
1164939 TCAAATTAGACAAACATGGATTCTAGTAACGATATTCATTCATTTTATGATTAAGTATTATAAAC
1 TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
*
1165004 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTTTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
* * *
1165069 CTATTTT-TTGTGAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCAAAACAGTAT
131 CTATTTTCCT-T-AAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
1165133 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCT
194 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCT
* * * *
1165198 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCTCCGTTTTTGACAGAGTCAAAGTTTGTCTTTTAAAT
259 TTGGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAAT
* * * *
1165263 AAGACAAACATGAGTAGTCATACTAATCACCATTCTTTTTAGGACTAGGCACCAAAAACATAGTC
324 AAGACAAACATGAATAGTCATACTAATC-CCATTCTTTTTAAGATTAGGCACCATAAACATAGTC
* * *
1165328 TTTTCATTATGATATGCAATATTGATGTTTTGGTTTCGTAGGAAAGGCATTTTTC
388 TTCTCATTA-GATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTTTC
1165383 TTTTGAGAGA
Statistics
Matches: 1179, Mismatches: 180, Indels: 72
0.82 0.13 0.05
Matches are distributed among these distances:
948 1 0.00
949 131 0.11
950 140 0.12
951 872 0.74
952 25 0.02
953 10 0.01
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (947 bp):
TCAAATTAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTTTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTCA
ATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCTTT
GGTGTCATAAGAAAAGCTTTTCTTTCCACCGTTTTTGACAGAATCAAAGTTTGTCTCTTAAATAA
GACAAACATGAATAGTCATACTAATCCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCTTC
TCATTAGATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTTTCCACAAATTTTAGTA
AACTCTAAGTTCATGCCACAAACAAGACAAACAAAGATTCTAGTAACAACCTTCATGCATTTTCT
GACTAAGAACTATAAACACATTCTCCTCAGTAGGAAAAATGATACAAATGATTTTCTTATGCATG
AAAATCTTTACTTTACCCTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAGCATCG
ATTCTCAAAACAGTCTCCATTATTTTCAGGACTAGGAACCTAAAACACATTCCCTTCATTAGGAT
ACATGACATTAAGGCTTTGGTGTCGCAAGAAAAAGCTTTTTCTTTCCACTGTTTTTGATAGAATC
AAAACTCGCCTCTTAAAAAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTCAGGATTA
GGCACCATAAACAAAGTCTTCTCGTAAGGATACACCATATTAATGCTTTGGTTTCATATGACAAT
TCTTCCCACCATTTCTTGTAAAATCTAAGTTCATGCC
Found at i:1165378 original size:475 final size:475
Alignment explanation
Indices: 1163037--1165380 Score: 2753
Period size: 475 Copynumber: 4.9 Consensus size: 475
1163027 AAAATCAATA
* * *
1163037 TCAAATTAGACAAACATTGATTCTAGTAATGATCTTCTTTCATTTTATGATTAAGCACTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * * *
1163102 ATATTTTCTTTAGTAGGATAAATAGA-ATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
66 ACATTCTCCTCAGTAGGATAAAT-GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTAC
* * *
1163166 CCTATTTTCCTTAGAATCAAAGTTCATCCCTTAAATAAGATAGGCATCGATTCTCAAAACAGTCT
130 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* *
1163231 CAATTATTTTCAGGATTGGGAACCTAAAACATATTCTTTTCATTAGGATACATGACATTGATGCT
195 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * * *
1163296 TTGGTGTCATAAGAAAAGCTTTTTTTTCCACCGTTTTTGATAGAATGAAAGTTTTTCTCTTAAAT
260 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * * * ** * *
1163361 AAGACAAACTTGAATACTCATACCAATCCCCATTCCTTTCAATATTGGGGACCATAAACATAGTC
325 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* * * * *
1163426 TTCACTTTAAGATACGCAATATTGATGCTTTGGTTTCGCAAGAACA-ACATTTTTCCCACCAATT
390 TTCTCATTAAGATATGCAATATTGATGCTTTGGTTTCGTAAGAA-AGGCA-TTTTCCCACCAATT
* *
1163490 TTTGTAAAGTTTAAGTTCGTGCC
453 TTTGTAAAGTCTAAGTTCATGCC
* * * * * *
1163513 TTAAATAAGACAAATAAAGATTCTAGTAATGACCTTCATTCATTTTCTGATTAAGAACTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* * *** * *
1163578 ACATTCTCCTCGGTAGGAAAAATGATACAAATGATTTTCTTATGCATGGAAATTTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
* * * * *
1163643 CTATTTTCCTTAAAATCAAAGTTCACCCCTCAAAAAAGACAAGCATCGATTCTCTAAATAGTCTC
131 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTC
* * * * * * *
1163708 CATTATTTTCAGGACTAGGAACCTCAAACACATTCCTTTCATTAGGATATATGACATTAAGGCTT
196 AATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
* * * * *
1163773 TGGTGTCGCAAGAAAAAGCTTTTTTTTTCCACTGTTTTTGATAGAATCAAAATTTTTCTCTTAAA
261 TGGTGTCGTAAG-AAAAGC-TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAA
* * * *
1163838 AAAGACAAACATGAATAGTCAAACTAATCCCCATTCTTTTCAGGATTTGGCACCATAAACATAGT
324 TAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGT
* ** * * * *
1163903 CTTCTC-GTAAGGATACACCATATTGATGCTTTGGTTTCATATG--A--CATTTCTTCCCACCAT
389 CTTCTCATTAA-GATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCA-TT-TTCCCACCAA
* * ** *
1163963 TTTTTGTAAAATCTACGTTTGTGTC
451 TTTTTGTAAAGTCTAAGTTCATGCC
* * *
1163988 TTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT-AGACACTATAAA
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAG-CACTATAAA
* * * *
1164052 TACATTTTCCTCA-TCAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
65 CACATTCTCCTCAGT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTA
* ** *
1164116 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTCTCGTAACAATC
129 CCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTC
** * * *
1164181 TCCAATCCTTCTT-A-GATTGGGAACCAAAAACACATTCCTTTCGTTAAGATACATGACATTGAT
194 T-CAATTATT-TTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGAT
* * * ** * * *
1164244 GCTTTGGGGTCCTAAGAAAAGGTTTTCACTCCACCGTTTCTAATCA-AATCAAAGTTTGCCTCTT
257 GCTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT-AGAATCAAAGTTTGTCTCTT
* * ** * * *
1164308 AAATAGGGCAAACATGAATAGTCATACTAATCCCTTTTATTTTCAAGATTAGGCACCATAAACAT
321 AAATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACAT
* * ** *
1164373 AGTCTTCTCATT-AG-TATACATGATACTGGCGCTTTGGTTTC-TCAAGAAAGGCATTTTTCCAC
386 AGTCTTCTCATTAAGATATGCA--ATATTGATGCTTTGGTTTCGT-AAGAAAGGCATTTTCCCAC
* * *
1164435 AAATTTTAGTAAACTCTAAGTTCATGCC
448 CAATTTTTGTAAAGTCTAAGTTCATGCC
* * *** * * ** *
1164463 ACAAACCAA-ACAAACATAGATTCTAGTAGCAATCTTCATGCATTTTGTGGCTAGGCACTATAAA
1 TCAAA-TAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAA
* * * * *
1164527 CACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTTTTTTTGCATGAAAATCTTTACTTTG
65 CACATTCTCCTCAGTAGGATAAATGATATTGATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTA
*
1164592 CCCTATTTTCCTTAAAAT-AGAAGTTCATCCCTTAAATAAGATAAGCATCGATTCTCAAAACAGT
129 CCCTATTTTCCTTAAAATCA-AAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGT
* * * *
1164656 CTCTATTATTTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACATGACATTGATT
193 CTCAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATG
* * * * *
1164721 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAAAGCTCGCCTCTTAA
258 CTTTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAA
* * * * *
1164786 ATAAGACAAACATGAATACTCAAACCAATCCCCATTCTTTTTAGGATTAGTCACCATAAACAAAG
323 ATAAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAG
* * * * * * * *
1164851 TCTTCTCTTTAAGATATGCGATATTAATGTTTTGGTTTTGCAAGACAGGCATTTTCCCACCGATT
388 TCTTCTCATTAAGATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTTCCCACCAATT
* *
1164916 CTTGTAAAGTTTAAGTTCATGCC
453 TTTGTAAAGTCTAAGTTCATGCC
* * * * * *
1164939 TCAAATTAGACAAACATGGATTCTAGTAACGATATTCATTCATTTTATGATTAAGTATTATAAAC
1 TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
1165004 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
* * * *
1165069 CTATTTT-TTGTGAAATCAAAGTTCATCCCTTAAATAAGACAAGCTTCGATTCTCAAAACAGTAT
131 CTATTTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCT
* *
1165133 CAATTATTTTCAGGATTGGGAACCTAAAACACATTTCTTTCATTAAGATACATGACATTGATGCT
195 CAATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCT
* * * *
1165198 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCTCCGTTTTTGACAGAGTCAAAGTTTGTCTTTTAAAT
260 TTGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT
* * * *
1165263 AAGACAAACATGAGTAGTCATACTAATCACCATTCTTTTTAGGACTAGGCACCAAAAACATAGTC
325 AAGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTC
* * * *
1165328 TTTTCATTATGATATGCAATATTGATGTTTTGGTTTCGTAGGAAAGGCATTTT
390 TTCTCATTAAGATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTT
1165381 TCTTTTGAGA
Statistics
Matches: 1568, Mismatches: 268, Indels: 65
0.82 0.14 0.03
Matches are distributed among these distances:
471 4 0.00
472 2 0.00
473 115 0.07
474 18 0.01
475 660 0.42
476 621 0.40
477 15 0.01
478 133 0.08
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (475 bp):
TCAAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAACAGTCTC
AATTATTTTCAGGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTT
TGGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
AGACAAACATGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCT
TCTCATTAAGATATGCAATATTGATGCTTTGGTTTCGTAAGAAAGGCATTTTCCCACCAATTTTT
GTAAAGTCTAAGTTCATGCC
Found at i:1166884 original size:919 final size:926
Alignment explanation
Indices: 1165414--1167878 Score: 3091
Period size: 919 Copynumber: 2.6 Consensus size: 926
1165404 TCCAGTAATG
* * *
1165414 GTCTTCATTCATTTTGTGATTAGGTACTATAAACACATTCTCCTCA-TTAGAATAAATGATATTG
1 GTCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCAGTAAG-ATAAATGATATTG
* * * *
1165478 ACGATTTTCTTTTGCATAAAAATCTTTTTTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCT
65 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCT
* * * * * * *
1165543 TAATTAGGACGAGAATCAATTCTCGTAACAATCTCCATTCCTTCCCATGATTAGGAACCAAAAAC
130 TAAATAAGACAAGAATCGATTCTCATAACAATCTCCATTCCTTCCCAAGATTGGGAACCAAAAAC
* * * *
1165608 ACATTCCCTTCTTTAGGATACATGACATTAATGC-TTTGGTGTCGCAAGAATAGCTTTTTCTTTC
195 ACATTTCCTTCTTTAGGATACATGACATTGATGCTTTTGG-GTCGCAAGAAAAGCTTTTTCTTTT
* *
1165672 CACCGTTTTTTATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACTTGAACACTCATACCAATC
259 CACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCAATC
* * * *
1165737 CCAATC-TTTCTAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATATGCGAAATTGATTT
324 ACATTCTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
* * * * *
1165801 TTTGGTTTCACAAGAAAGGCATTTTTCCTACTAATTTTTGTAAAGTCTAACATCT-TGCCTCGAA
388 TTTGGTTTCGCAAGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAA-GTTTATGCCTCAAA
* * * * * *
1165865 TGAGACAAAAATGGATTCTCGTAACGACCTTCATTCATTTTGTGATTAACCACTCTAAACACATT
452 TGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATT
* ** * *
1165930 ATCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTAAATGGAAATCTTTTCTTTTCCCTTTT
517 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATT
** * * *
1165995 TTCCTTAAAATCAAAATTCATCCTTTAAATAAGACAAGCGTCCATTCTCAAAATAGTCTCCATAA
582 TTCCTTAAAATCAAAATTCATCCAATAAATAAGACAAGCATCCATCCTCAAAACAGTCTCCATAA
* * * *
1166060 TTTTCAGGATTGGGAACCGAAAACACCTTCCCTTTATTAGGATACATGACATTGATGCTTTGCT-
647 TTTTCAGGATTGGGAACCGAAAACACATTCCCTTCATTAGGATACACGACATTAATGCTTTGCTG
* * *
1166124 T-C-CACCGTTTTTGA-AGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCTTACC
712 TACTCACCGTTTTTGATAGAATCAAAGTTCACCTCTCAAATAAGACAAACATGAATACTCCTACC
* *
1166186 AATCCCCATTTCTTT-CAGGATTAGGCACCATAAACATAGTCTTCTTTTTAAGATACGCGATATT
777 AATCCCCA-TTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATT
* * **
1166250 GATGTTTTGGCTTT-GCAAGAAAGGGATTTTTCCCTC-C-AATTTTTGTAAAGTTTAAGTTCATG
841 GATGTTTTGG-TTTCACAAGAAAGGCA-TTTT-CCTCACTAATTTTTGTAAAGCCTAAGTTCATG
*
1166312 CCTCAAATGAGACAAACATGG-AT
903 CCTCAAATGAGACAAAAATGGTAT
** *
1166335 -TCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCGAAGTAAGATAAATAATATTGA
1 GTCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCAGTAAGATAAATGATATTGA
* *
1166399 TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCTTT
66 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTT
* * * * ** * *
1166464 AAATAAGACAAGCATCGATTCTTAAAACAATCTCCATT-ATTTTCAGGATTGGGAACCTAAAACA
131 AAATAAGACAAGAATCGATTCTCATAACAATCTCCATTCCTTCCCAAGATTGGGAACCAAAAACA
* * *
1166528 CATTTCCTTCATTAGGATACATGACATTGATGCTTTTGGGTTGTAAGAAAAGC-TTTTCTTTTCA
196 CATTTCCTTCTTTAGGATACATGACATTGATGCTTTTGGGTCGCAAGAAAAGCTTTTTCTTTTCA
** * * * * * * *
1166592 TTGTTTTTGATAGGATTAAAGTTTGTCTCTTAAATAAGACAAACATCAATAGTCATACTAATCAA
261 CCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCAATC-A
* * * * * *
1166657 CATTCTTTTCGGGACTAGGCACCATAAACATAGTCTACTCATT-AGAGTACGTGATATTGATGTT
325 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGA-TACGCGAAATTGATGTT
* ** *
1166721 TTGGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGGGAAGTCTTAGTTTATGCCTC-AATC
389 TTGGTTTCGCAAGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT-
** ** * * * *
1166785 GAGACAAACTTGGATTCGAATAATGATGTTCTTTCATTTTATTG-TTAGGCACTATAAACATATT
453 GAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTA-TGATTAAGCACTATAAACACATT
* * * * * *
1166849 CTCCTCAATATGATAAAT-AGTATTGATGATTTTCTTTTGCACGAAAATTTTTTCTTTGCCCTAT
517 CTCCTCAGTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTAT
* * * *** *
1166913 TTTCCTTAAAGTCAAAGTTCATCCAATAAATAAGACAAGCATCGATCCTTGTAACAGTCTCCATT
581 TTTCCTTAAAATCAAAATTCATCCAATAAATAAGACAAGCATCCATCCTCAAAACAGTCTCCATA
* *
1166978 ATTTTCAGGATTGGGAACCTAAAACATATTCCCTTCATTAGGATACACGACATTAATGCTTTGCT
646 ATTTTCAGGATTGGGAACCGAAAACACATTCCCTTCATTAGGATACACGACATTAATGCTTTGCT
* *
1167043 GTCGCAAGAAAAGCTTTTTTCACCGTTTTTGATAGAATTAAAGTTCGCCTCTCAAATAAGACAAA
711 GT---------A-C-----TCACCGTTTTTGATAGAATCAAAGTTCACCTCTCAAATAAGACAAA
* * *
1167108 CTTGAATACTCCTACCGATCCCCATTCTTTCCTGGATTAGGCACCATAAACATAGTCTTCTCTTT
761 CATGAATACTCCTACCAATCCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTT
* *
1167173 AAGATATGCGAAATTGATGTTTTGGTTTCACAAGAAAGGCATTTTCGTCACTAATTTTTGTAAAG
826 AAGATACGCGAAATTGATGTTTTGGTTTCACAAGAAAGGCATTTTCCTCACTAATTTTTGTAAAG
**
1167238 CCTAAGTTTGTGCCTCAAATGAGACAAAAATGGATTCTTTTAAT
891 CCTAAGTTCATGCCTCAAATGAGACAAAAATGG-------T-AT
* * * *
1167282 GGTCTTCATTCATTTTATGATTAAGCACAATAAACACATTCTCTTCAGTAGGATAAATGATATTG
1 -GTCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCAGTAAGATAAATGATATTG
* *
1167347 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACCTTCCTTAAAATCAAAGTTTATCCCT
65 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCT
* * * * **
1167412 TATATATGATAAGAATCGATTCTCATAACAAACTGTATTCCTTCCCAAGATTGGGAACCAAAAAC
130 TAAATAAGACAAGAATCGATTCTCATAACAATCTCCATTCCTTCCCAAGATTGGGAACCAAAAAC
* *
1167477 ACA-TTCCTCTCTTTAGGATACATGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTTCTTTT
195 ACATTTCCT-TCTTTAGGATACATGACATTGATGCTTTTGGGTCGCAAGAAAAGCTTTTTCTTTT
* *
1167541 CACCGTTTTTTATAGAATCAAAGTATGTCTCTTAAATAAGACAAACTTGAATACTCCTACCAATC
259 CACCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCAAT-
* *
1167606 CTCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
323 CACATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
*
1167671 TTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
388 TTTGGTTTCGCAAGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
1167736 GAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTC
453 GAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTC
* * *
1167801 TCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACCCTAATT
518 TCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTT
*
1167866 TCCTGAAAATCAA
583 TCCTTAAAATCAA
1167879 TATCAAATTA
Statistics
Matches: 1297, Mismatches: 196, Indels: 72
0.83 0.13 0.05
Matches are distributed among these distances:
918 71 0.05
919 367 0.28
920 155 0.12
921 3 0.00
931 1 0.00
936 3 0.00
937 26 0.02
938 155 0.12
947 2 0.00
949 152 0.12
950 65 0.05
951 289 0.22
952 8 0.01
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.37
Consensus pattern (926 bp):
GTCTTCATTCATTTTGTGATTAAGCACTATAAACACATTCTCCTCAGTAAGATAAATGATATTGA
TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTT
AAATAAGACAAGAATCGATTCTCATAACAATCTCCATTCCTTCCCAAGATTGGGAACCAAAAACA
CATTTCCTTCTTTAGGATACATGACATTGATGCTTTTGGGTCGCAAGAAAAGCTTTTTCTTTTCA
CCGTTTTTTATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACTTGAATACTCATACCAATCAC
ATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGTTTT
GGTTTCGCAAGAAAGGCATTTTTCCCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAATGAG
ACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCTCC
TCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTATTTTCC
TTAAAATCAAAATTCATCCAATAAATAAGACAAGCATCCATCCTCAAAACAGTCTCCATAATTTT
CAGGATTGGGAACCGAAAACACATTCCCTTCATTAGGATACACGACATTAATGCTTTGCTGTACT
CACCGTTTTTGATAGAATCAAAGTTCACCTCTCAAATAAGACAAACATGAATACTCCTACCAATC
CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
TTTGGTTTCACAAGAAAGGCATTTTCCTCACTAATTTTTGTAAAGCCTAAGTTCATGCCTCAAAT
GAGACAAAAATGGTAT
Found at i:1167687 original size:478 final size:474
Alignment explanation
Indices: 1166126--1167878 Score: 2233
Period size: 473 Copynumber: 3.7 Consensus size: 474
1166116 GCTTTGCTTC
* *
1166126 CACCGTTTTTGA-AGAATCAAAGTTCATCTCTTAAATAAGACAAACATGAATACTCTTACCAATC
1 CACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
* *
1166190 CCCATTTCTTT-CAGGATTAGGCACCATAAACATAGTCTTCTTTTTAAGATACGCGATATTGATG
66 CCCA-TTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
* * * * * *
1166254 TTTTGGCTTT-GCAAGAAAGGGATTTTTCCCTCCAATTTTTGTAAAGTTTAAGTTCATGCCTCAA
130 TTTTGG-TTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAA
* *
1166318 ATGAGACAAACATGG--------AT--TCTTCATTCATTTTGTGATTAAGCACTATAAACACATT
194 ATGAGACAAAAATGGATTCTATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATT
** * * *
1166373 CTCCGAAGTAAGATAAATAATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACT
259 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACT
* *
1166438 TTCCTTAAAATCAAAGTTCATCCTTTAAATAAGACAAGCATCGATTCTTAAAACAATCTCCATTA
324 TTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTA
*
1166503 TTTTCAGGATTGGGAACCTAAAACACATTTCCT-TCATTAGGATACATGACATTGATGCTTTTGG
389 TTTTCAGGATTGGGAACCTAAAACACA-TTCCTCTCATTAGGATACATGACATTGATGC-TTTGT
* *
1166567 GTTGTAAGAAAAGCTTTTCTTTT
452 GTCGCAAGAAAAGCTTTTCTTTT
** * * * * * * *
1166590 CATTGTTTTTGATAGGATTAAAGTTTGTCTCTTAAATAAGACAAACATCAATAGTCATACTAATC
1 CACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
** * * * * * * *
1166655 AACATTCTTTTCGGGACTAGGCACCATAAACATAGTCTACTCATT-AGAGTACGTGATATTGATG
66 CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGA-TACGCGAAATTGATG
* * ** *
1166719 TTTTGGTTTCGCAAGGAAGGCATTTTTCCCACTAATTTTTGGGAAGTCTTAGTTTATGCCTC-AA
130 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
** * * * * *
1166783 TCGAGACAAACTTGGATTCGAATAATGATGTTCTTTCATTTTATTG-TTAGGCACTATAAACATA
195 T-GAGACAAAAATGGATTC-TATAATGATCTTCATTCATTTTA-TGATTAAGCACTATAAACACA
* * * *
1166847 TTCTCCTCAATATGATAAAT-AGTATTGATGATTTTCTTTTGCACGAAAATTTTTTCTTTGCCCT
257 TTCTCCTCAGTAGGATAAATGA-TATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCT
* * * * * *
1166911 ATTTTCCTTAAAGTCAAAGTTCATCCAATAAATAAGACAAGCATCGATCCTTGTAACAGTCTCCA
321 ACTTTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCA
* * *
1166976 TTATTTTCAGGATTGGGAACCTAAAACATATTCC-CTTCATTAGGATACACGACATTAATGCTTT
386 TTATTTTCAGGATTGGGAACCTAAAACACATTCCTC-TCATTAGGATACATGACATTGATGCTTT
1167040 GCTGTCGCAAGAAAAGC--TT-TTTT
450 G-TGTCGCAAGAAAAGCTTTTCTTTT
* * * * *
1167063 CACCGTTTTTGATAGAATTAAAGTTCGCCTCTCAAATAAGACAAACTTGAATACTCCTACCGATC
1 CACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
* *
1167128 CCCATTCTTTCCTGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATATGCGAAATTGATGT
66 CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
* * *
1167193 TTTGGTTTCACAAGAAAGGCA-TTTTCGTCACTAATTTTTGTAAAGCCTAAGTTTGTGCCTCAAA
131 TTTGGTTTCGCAAGAAAGGCATTTTTC-TCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
* * *
1167257 TGAGACAAAAATGGATTCTTTTAATGGTCTTCATTCATTTTATGATTAAGCACAATAAACACATT
195 TGAGACAAAAATGGATTC-TATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATT
* *
1167322 CTCTTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACC
259 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACT
* * * * * * * * **
1167387 TTCCTTAAAATCAAAGTTTATCCCTTATATATGATAAGAATCGATTCTCATAACAAACTGTATTC
324 TTCCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATT-
* ** * * *
1167452 CTTCCCAAGATTGGGAACCAAAAACACATTCCTCTCTTTAGGATACATGACATTGATGCTTTAGT
388 ATTTTCAGGATTGGGAACCTAAAACACATTCCTCTCATTAGGATACATGACATTGATGCTTT-GT
1167517 GTCGCAAGAAAAGCTTTTTCTTTT
452 GTCGCAAGAAAAGC-TTTTCTTTT
* *
1167541 CACCGTTTTTTATAGAATCAAAGTAT-GTCTCTTAAATAAGACAAACTTGAATACTCCTACCAAT
1 CACCGTTTTTGATAGAATCAAAGT-TCGTCTCTTAAATAAGACAAACATGAATACTCCTACCAAT
*
1167605 CCTCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
65 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATG
1167670 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
130 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAA
1167735 TGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATT
195 TGAGACAAAAATGGATTCT-ATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATT
* * *
1167800 CTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCAT-AGAAATCTTTTCTTTACCCTAA
259 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTAC
*
1167864 TTTCCTGAAAATCAA
323 TTTCCTTAAAATCAA
1167879 TATCAAATTA
Statistics
Matches: 1106, Mismatches: 146, Indels: 60
0.84 0.11 0.05
Matches are distributed among these distances:
464 25 0.02
465 150 0.14
472 7 0.01
473 310 0.28
474 77 0.07
475 11 0.01
476 204 0.18
477 6 0.01
478 310 0.28
479 6 0.01
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
CACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATAAGACAAACATGAATACTCCTACCAATC
CCCATTCTTTCCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGATACGCGAAATTGATGT
TTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTATGCCTCAAAT
GAGACAAAAATGGATTCTATAATGATCTTCATTCATTTTATGATTAAGCACTATAAACACATTCT
CCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACTTT
CCTTAAAATCAAAGTTCATCCATTAAATAAGACAAGCATCGATTCTTATAACAATCTCCATTATT
TTCAGGATTGGGAACCTAAAACACATTCCTCTCATTAGGATACATGACATTGATGCTTTGTGTCG
CAAGAAAAGCTTTTCTTTT
Found at i:1167825 original size:158 final size:157
Alignment explanation
Indices: 1167185--1167983 Score: 431
Period size: 160 Copynumber: 5.1 Consensus size: 157
1167175 GATATGCGAA
* * * ** * *
1167185 ATTGATG-TTTTGGTTTCACAAGAAAGGCATTTTCGTCACTAATTTTTGTAAAGCCTAAGTTTGT
1 ATTGATGATTTT-GTTTCGCAAGAAAAGCTTTTTC-TCACTAATTTTTGTAAAATCAAAGTTTAT
** * * *
1167249 GCCTCAAATGAGACAAAAATGGATTCTTTTAATGGTCTTCATTCATTTTATGATTAAGCACAATA
64 GCCTCAAATGAGACAAAAATGGATTCTCATAACGATCTTCATTCATTTTATGATTAAGCACCATA
1167314 AACACATTCT-CTTCAGTAGGATAAATGAT
129 AACACATTCTCCTT-AGTAGGATAAATGAT
* * * * * * * **
1167343 ATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTACCTTCCT-TAAAATCAAAGTTTA
1 ATTGATGATTTTGTTTCGCAAGAAAAGCTTTT-TCT-CACTA-ATTTTTGTAAAATCAAAGTTTA
* * * * * * * * * ** * ** *
1167407 TCCCTTATAT-ATGATAAGAATCGATTCTCATAACAAACTGT-ATTCCTTCCCAAGATTGGGAAC
63 TGCCTCAAATGA-GACAAAAATGGATTCTCATAACGATCT-TCATTCATT-TTATGATTAAGCAC
* * *
1167470 CAAAAACACATTCCTCTCTT--TAGGATACATGAC
125 CATAAACACATT-CTC-CTTAGTAGGATAAATGAT
* * * *** * *
1167503 ATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTTCTTTTCACCGTTTTTTATAGAATCAAAG--TA
1 ATTGATGATTTTGTTTCGCAAGAAAAGCTTTTTC---TCACTAATTTTTGTAAAATCAAAGTTTA
* * ** * * * * * * * * *
1167566 TGTCTCTTAAATAAGACAAACTTGAATACTCCTACCAATCCTCATTC-TTTCCAGGATTAGGCAC
63 TG-C-CTCAAATGAGACAAAAATGGATTCTCATAACGATCTTCATTCATTT-TATGATTAAGCAC
* * * *** *
1167630 CATAAACATAGTCTTCTCTT--TAAGATACGCGAA
125 CATAAACACATTC-TC-CTTAGTAGGATAAATGAT
* * *
1167663 ATTGATG-TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGTAAAGTCTAAGTTTAT
1 ATTGATGATTTT-GTTTCGCAAGAAAAGC-TTTTTCTCACTAATTTTTGTAAAATCAAAGTTTAT
* *
1167727 GCCTCAAATGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATA
64 GCCTCAAATGAGACAAAAATGGATTCTCATAACGATCTTCATTCATTTTATGATTAAGCACCATA
1167792 AACACATTCTCCTTAGTAGGATAAATGAT
129 AACACATTCTCCTTAGTAGGATAAATGAT
* * * * * *
1167821 ATTGATGATTTTCTTTTGCATAG-AAATCTTTTCTTTACCCTAATTTCCTG-AAAATC-AA---T
1 ATTGATGATTTTGTTTCGCA-AGAAAAGCTTTT-TCT-CACTAATTT-TTGTAAAATCAAAGTTT
* * ** *
1167880 A----TCAAATTAGACAAACATGGATTCTTGTAAAGATCTTCATTCATTTTATGATTAAGC-CCT
62 ATGCCTCAAATGAGACAAAAATGGATTCTCATAACGATCTTCATTCATTTTATGATTAAGCACC-
* *
1167940 ATAAACATATTCTCCTCAGTAGGATAAATGAT
126 ATAAACACATTCTCCTTAGTAGGATAAATGAT
1167972 ATTGATGATTTT
1 ATTGATGATTTT
1167984 CTTTTGCATG
Statistics
Matches: 482, Mismatches: 126, Indels: 73
0.71 0.19 0.11
Matches are distributed among these distances:
150 1 0.00
151 93 0.19
155 2 0.00
156 3 0.01
157 6 0.01
158 118 0.24
159 82 0.17
160 126 0.26
161 46 0.10
162 2 0.00
163 3 0.01
ACGTcount: A:0.32, C:0.17, G:0.13, T:0.37
Consensus pattern (157 bp):
ATTGATGATTTTGTTTCGCAAGAAAAGCTTTTTCTCACTAATTTTTGTAAAATCAAAGTTTATGC
CTCAAATGAGACAAAAATGGATTCTCATAACGATCTTCATTCATTTTATGATTAAGCACCATAAA
CACATTCTCCTTAGTAGGATAAATGAT
Found at i:1167915 original size:151 final size:151
Alignment explanation
Indices: 1167730--1168029 Score: 501
Period size: 151 Copynumber: 2.0 Consensus size: 151
1167720 AGTTTATGCC
*
1167730 TCAAATGAGACAAAAATGGATTCTCATAATGATCTTCATTCATTTTATGATTAAGCACTATAAAC
1 TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
*
1167795 ACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
1167860 CTAATTTCCTGAAAATCAATA
131 CTAATTTCCTGAAAATCAATA
* * ** *
1167881 TCAAATTAGACAAACATGGATTCTTGTAAAGATCTTCATTCATTTTATGATTAAGCCCTATAAAC
1 TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
* *
1167946 ATATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC
66 ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
* *
1168011 CTATTTTCCTTAAAATCAA
131 CTAATTTCCTGAAAATCAA
1168030 AGTTCATATC
Statistics
Matches: 138, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
151 138 1.00
ACGTcount: A:0.34, C:0.16, G:0.11, T:0.39
Consensus pattern (151 bp):
TCAAATGAGACAAAAATGGATTCTCATAAAGATCTTCATTCATTTTATGATTAAGCACTATAAAC
ACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATAGAAATCTTTTCTTTACC
CTAATTTCCTGAAAATCAATA
Found at i:1168965 original size:33 final size:33
Alignment explanation
Indices: 1168911--1168973 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
1168901 TGGGACAATG
** *
1168911 TATCGATACAATTCGTTATGTATTGATACATTA
1 TATCGATACAATTCGCCATGTATCGATACATTA
1168944 TATCGATACAATGT-GCCATGTATCGATACA
1 TATCGATACAAT-TCGCCATGTATCGATACA
1168974 AACAGTATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
33 25 0.96
34 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (33 bp):
TATCGATACAATTCGCCATGTATCGATACATTA
Found at i:1169028 original size:20 final size:19
Alignment explanation
Indices: 1169003--1169095 Score: 82
Period size: 20 Copynumber: 4.7 Consensus size: 19
1168993 CTGCTAGTTT
* *
1169003 CATGTATCGATACAATTATG
1 CATGTATCGATACAATGA-A
1169023 CATGTATCGATACAATGAA
1 CATGTATCGATACAATGAA
1169042 CATGTATCGATACAA--AA
1 CATGTATCGATACAATGAA
* *
1169059 CATAATGTATCGATACATCTGGA
1 C---ATGTATCGATACA-ATGAA
*
1169082 TATGTATCGATACA
1 CATGTATCGATACA
1169096 TACAAGGGTT
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
17 3 0.05
19 15 0.24
20 43 0.69
23 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAA
Found at i:1170202 original size:159 final size:158
Alignment explanation
Indices: 1169557--1172220 Score: 658
Period size: 159 Copynumber: 16.8 Consensus size: 158
1169547 TTCGTGCCTC
* ** ** * * * * * *
1169557 AAATTAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTC-TGATTAGGAACTATTAACG
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAACA
* * ** * * * * *
1169621 CATTCAT-CTTAGTAGGATA-AACATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTACC
66 CATTC-TCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT-CC
* * * *
1169684 TTATTTTCCTTTAAATCAAAGTTCACCCCTT
129 CTACTTT-CTTAAAATCAAAGTTCATCCCTT
* * * * * * * *
1169715 AAA-AATGACAAGCATCGATTCTCA-AAACAGTCTCCATT-ATTTTCAAGATTGGGAACC-TAAA
1 AAATAA-GACAAACATTGATTCT-AGTAATAATCTCCATTCATTTTCGAGATTAGGCACCAT-AA
* * * * * * * * **
1169776 ATACATTC-CCTTTACTAGGATACATGACATTGAGGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
63 ACACATTCTCC-TCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT
* ** **
1169840 CCACTA-TTT-TTGATAGAATCAAATTTTTTTTCTT
127 CC-CTACTTTCTT-A-A-AATCAAAGTTCATCCCTT
* * **
1169874 AAATAAGATAAACA-TGA--ATAGTCAAACTAATC-CCTATTTTTTTTC-AGGATTAGGCACCAT
1 AAATAAGACAAACATTGATTCTAGT--AA-TAATCTCC-ATTCATTTTCGA-GATTAGGCACCAT
* * ** * * * * **
1169934 AAACATAGTCTTTTCATAAGGATACACGATATTGATG-CTTTGCTTT-CATATGTATGAG--TTT
61 AAACACATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCA-A-G-AAAAGCTTTT
* * * * * * * *
1169995 CTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCTC
123 CTTTCC-CTACTTTCT-TAAAATCAAAGTTCATCCCTT
* * * *
1170033 AAATGAGACAAACATTGATTATAGTAATAATCTTCATTCATTTT-GTGATTAGGCACCATAAACA
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAACA
* * * * *
1170097 TATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT-CCC
1170162 TACTTTCCTTAAAATCAAAGTTCATCCCTT
130 TACTTT-CTTAAAATCAAAGTTCATCCCTT
** * * * * * * * *
1170192 AAATAAGACAAGA-ATCAATTCTCGTAACAATCTCCATTC-CTTCCTAGATTGGGAACCAAAAAC
1 AAATAAGACAA-ACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAAC
* * * * * * * **
1170255 ATATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCACT-C
65 ACATTCTCC-TCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTTCC
1170318 C-ACCGTTTCTAATAAAATCAAAGTT--TGCCTCTT
129 CTA-C-TTTCT--TAAAATCAAAGTTCAT-CC-CTT
* * * * *
1170351 AAATAGGACAAACA-TGAATAGTC-A-TACTAATC-CCCTTTATTTTCAAGATTAGGCACCATAA
1 AAATAAGACAAACATTG-AT--TCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAA
* * * * * * * * * * * * *
1170412 ACATAGTCTTCTCATAAGTATACACGATATTGGTGCTTTGGATTCGTAAG-AAAGGTTTT-TTTC
63 ACACATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTTC
* * * * **
1170475 CC-ACCAATTATTATAAACTCTAAGTTCATGCCAC
128 CCTA-C-TTTCTTA-AAA-TCAAAGTTCATCCCTT
* * * * * *** * * * * * * *
1170509 AAACAAAACAAACGTAGATTATAGCGGTGATCTTCATCCATTTT-GTGACTAGACACTATAAACA
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAACA
* * * ** **
1170573 CATTCTCCTTAGTAGGATAAATGATATTGATGATTTT-TTTTGCTTGAAAATTTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT-CCC
* * *
1170637 TATTTTCCCTAAAATCAAAGTTCATCCCTC
130 TACTTT-CTTAAAATCAAAGTTCATCCCTT
* * * * * *
1170667 AAATAAGACAAGCATCGATTCT--TAAAAGAGTCTCCATT-ATTTTCAAGATTGGGAACCCA-AA
1 AAATAAGACAAACATTGATTCTAGTAATA-A-TCTCCATTCATTTTCGAGATTAGGCA-CCATAA
* * * * **
1170728 ACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTT
63 ACACATTCTCC-TCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT
*
1170792 -CC-ACCGTTT-TTGATAGAATCAAAGTTCA-CCTTT
127 CCCTA-C-TTTCTT-A-A-AATCAAAGTTCATCCCTT
* * * * ** * *
1170825 GAAACAAGAAAAAGA-TGAATACTCA-TACCAATCCCCAGTC-TTTTC-AGGATTAGGCACCATA
1 -AAATAAGACAAACATTG-ATTCT-AGTAATAATCTCCATTCATTTTCGA-GATTAGGCACCATA
* * * * * *** * *
1170886 AACATAGTCTTCTCTTTATGATATGCGATATTGATG-TTTTGGTTTCGCAAGAAAGGCATTTTC-
62 AACACATTCTCCTCATTAGGATACATGATATTGATGATTTT-GTTTTGCAAGAAAAGC-TTTTCT
* * * * * * * *
1170949 --CCACCAATTTTTGTGAAGTCTAAGTTCATGCCTC
125 TTCC-CTACTTTCT-TAAAATCAAAGTTCATCCCTT
* * * * * ** * * * *
1170983 AATTTAGGCAAACATGGATTCTTGTAACGATCTTCATTCAATTT--ATGATTAGGCACTATACAC
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGA-GATTAGGCACCATAAAC
* * * * * *
1171046 ACATTCTCCTCAGTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACC
65 ACATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT-CC
* * *
1171111 CTATTTTTTGTAAAATCGAAGTTCATCCCTT
129 CTACTTTCT-TAAAATCAAAGTTCATCCCTT
* * * * * * * *
1171142 AAATAAGACAAGCATTGATTCTCA-AAACAGTCTCAATT-ATTTTCAAGATTGGGAACC-TAAAA
1 AAATAAGACAAACATTGATTCT-AGTAATAATCTCCATTCATTTTCGAGATTAGGCACCAT-AAA
* * * * * ***
1171204 CACATTC-CTTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTT-
64 CACATTCTC-CTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTTC
* ** *
1171267 CCTTCGTTT-TTGATAGAATCAAAGTTTGTCTCTT
128 CCTAC-TTTCTT-A-A-AATCAAAGTTCATCCCTT
* * * * *
1171301 AAATAAGACAAACA-TGAGTAGTC-A-TACTAATCACCTTTC-TTTTCGAGACTAGGCACCAAAA
1 AAATAAGACAAACATTGA-T--TCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAA
* * * * * * ** * * * * *
1171362 AGATAGTCTTCTCACTATGATATGTAATATTGATG-TTTTGGTTTCGCAAGAAAGGCATTT-TTC
63 ACACATTCTCCTCATTAGGATACATGATATTGATGATTTT-GTTTTGCAAGAAAAGCTTTTCTTT
* * * * * * * *
1171425 CCACCAATTTCCATGAAGT-ATAAGTCCTTGCCTT
127 CC-CTACTTT-CTTAAAATCA-AAGTTCATCCCTT
* * * * ** * * * *
1171459 AGATGAGACAAAAATGGATTCTAGTAACGATCTTCATTCATTTTTTG-G-TTAAGCACTAT-AAC
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCA-TTTTCGAGATTAGGCACCATAAAC
* * * * * * *
1171521 ACCTTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCCTAG-AAATCTTTTCTTTAG
65 ACATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTG-CAAGAAAAGCTTTTCTTT-C
* *
1171585 CCTATTTTCTTTAAAATCAAAGTTCATCCCTC
128 CCTACTTTC-TTAAAATCAAAGTTCATCCCTT
* * * * * * * * *
1171617 AAAAAAGCCAAGCATCGATTCTCA-AAATAGTCTCCATT-ATTTTCCAGATTGGGAACC-TAAAA
1 AAATAAGACAAACATTGATTCT-AGTAATAATCTCCATTCATTTTCGAGATTAGGCACCAT-AAA
* * * * *
1171679 CACATTC-CCTTCATTAGGATACATGACTA-TGAGGCTTTGGTGTTACAAGAAAAGCTTTTCTTT
64 CACATTCTCC-TCATTAGGATACATGA-TATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT
* * * *
1171742 -CC-ACTGTTTTTGATAGAATCAAAATTTATCTCTT
127 CCCTACT-TTCTT-A-A-AATCAAAGTTCATCCCTT
* * * * *
1171776 AAATAAGACAAAC-TTGAATAGTC-A-TACTAATCCCCATTCTTTTTAG-GATTAGGTACCA-AA
1 AAATAAGACAAACATTG-AT--TCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAA
* * * * * * * * **
1171836 A-ACGTGGTCTTCTAATAAGGATACACGATATTGGT-ACTTTGGTTT-CATATG-AAAGGGTTTC
63 ACACAT--TCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCA-A-GAAAAGCTTTTC
* * * * * *
1171897 ATCCCACTAGTTTTTGTAAAATCTAAGTTCA-CGCCTCA
124 TTTCC-CTACTTTCT-TAAAATCAAAGTTCATC-CCT-T
* * * * * *
1171935 AAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACA
1 AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAACA
** * * * * * *
1171999 CATTCTTTTCACTAGGATAAATGATATTAATGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCC
66 CATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTT-CCC
1172062 TACCTTTCTTAAAATCAAAGTTCATCCCTT
130 TA-CTTTCTTAAAATCAAAGTTCATCCCTT
* * * * * * * ** * * * *
1172092 AAATATGACAGGA-ATCGATTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGAACCAAAAAC
1 AAATAAGACA-AACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAAC
* * * * * *
1172156 AC-TT-TCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCTTT
65 ACATTCTCCTC-A-TTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGC-TTTTCTTT
1172219 CC
127 CC
1172221 ACTGTTTTTT
Statistics
Matches: 1759, Mismatches: 565, Indels: 362
0.65 0.21 0.13
Matches are distributed among these distances:
155 1 0.00
156 28 0.02
157 213 0.12
158 532 0.30
159 834 0.47
160 114 0.06
161 31 0.02
162 6 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
AAATAAGACAAACATTGATTCTAGTAATAATCTCCATTCATTTTCGAGATTAGGCACCATAAACA
CATTCTCCTCATTAGGATACATGATATTGATGATTTTGTTTTGCAAGAAAAGCTTTTCTTTCCCT
ACTTTCTTAAAATCAAAGTTCATCCCTT
Found at i:1170845 original size:475 final size:474
Alignment explanation
Indices: 1169365--1172444 Score: 3281
Period size: 475 Copynumber: 6.5 Consensus size: 474
1169355 GATCCTAACA
* * *
1169365 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * ** * * * * ****
1169430 -CCTTATTCTTTGCAATAGTAGGGACCATAAACATAGTCTGCTCTTTAAG-ATAGGTAATATTGA
66 CCCCT-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATACACGATATTGA
* *** * * ** *
1169493 TGTTTTGGTTTCGTAAGAAAAACATTTTTCCCACCAATTTTTCTAAAGTCTATTTTCGTGCCTCA
129 TGCTTTGGTTTCGTAAG-AAAGGTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCA
* * * * *
1169558 AATTAGACAAACA-AGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGGA-ACTATTAACG
193 AATAAGACAAACATA-GATTCTAGTAATGATCTTCATTCATTTTGTGATTA-GACACTATAAACA
* * * * *
1169621 CATTCAT-CTTAGTAGGATAAA-CATATTGATGATTTTCTTTTGTATGGAAATCTTTTCTTTACC
256 CATTC-TCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * *
1169684 TTATTTTCCTTTAAATCAAAGTTCACCCCTTAAA-AATGACAAGCATCGATTCTCAAAACAGTCT
320 CTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAA-GACAAGCATCGATTCTCAAAA-AGTCT
* * * *
1169748 CCATTATTTTCAAGATTGGGAACCTAAAATACATTCCCTTTACTAGGATACATGACATTGAGGCT
383 CCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
1169813 TTGGTGTCACAAGAAAAGCTTTTCTTT
448 TTGGTGTCACAAGAAAAGCTTTTCTTT
** * * * * *
1169840 CCACTATTTTTGATAGAATCAAATTTTTTTTCTTAAATAAGATAAACATGAATAGTCAAACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * *
1169905 CCCTATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTTTCATAAGGATACACGATATTGAT
66 CCC-CTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGAT
* * * * * * *
1169970 GCTTTGCTTTCATATGTATGAGTTTCTTCCCACCAATTTTTGTAAAATCTAAGTTCGTGCCTCAA
130 GCTTTGGTTTCGTAAGAAAG-GTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAA
* * * * * * *
1170035 ATGAGACAAACATTGATTATAGTAATAATCTTCATTCATTTTGTGATTAGGCACCATAAACATAT
194 ATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACAT
* * *
1170100 TCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCACGAAAATCTTTTCTTTGCCCTAC
259 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * *
1170165 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCAATTCTCGTAACAA-TCTCCAT
324 TTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC--AAAAAGTCTCCAT
** * * * *
1170229 TCCTTCCTAGATTGGGAACCAAAAACATATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
387 TATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
* * **
1170294 TGTCGCAAGAAAAGGTTTTCACT
452 TGTCACAAGAAAAGCTTTTCTTT
* * * ** *
1170317 CCACCGTTTCTAATAAAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * *
1170382 CCCCTTTATTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGGTG
66 CCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
* * * * *
1170447 CTTTGGATTCGTAAGAAAGGTTTTTTTCCCACCAATTATTATAAACTCTAAGTTCATGCCACAAA
131 CTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAA
* * * * *** * *
1170512 CAAAACAAACGTAGATTATAGCGGTGATCTTCATCCATTTTGTGACTAGACACTATAAACACATT
195 TAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATT
* * *
1170577 CTCCTTAGTAGGATAAATGATATTGATGATTTT-TTTTGCTTGAAAATTTTTTCTTTGCCCTATT
260 CTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATT
* * *
1170641 TTCCCTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTTAAAAGAGTCTCCATTA
325 TTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCTCCATTA
*
1170706 TTTTCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
389 TTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG
1170771 TCACAAGAAAAGCTTTTCTTT
454 TCACAAGAAAAGCTTTTCTTT
* * * * * * *
1170792 CCACCGTTTTTGATAGAATCAAAGTTCACCT-TTGAAACAAGAAAAAGATGAATACTCATACCAA
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTT-AAATAAGACAAACATGAATAGTCATACTAA
** * * **
1170856 TCCCCAGTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTA-TGATATGCGATATTGA
65 TCCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGT-ATACACGATATTGA
* * ** * *
1170920 TGTTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTGTGAAGTCTAAGTTCATGCCTCAA
129 TGCTTTGGTTTCGTAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAA
* * * * * * * * * *
1170985 TTTAGGCAAACATGGATTCTTGTAACGATCTTCATTCAATTTATGATTAGGCACTATACACACAT
194 ATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACAT
* *
1171050 TCTCCTCAGTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTACCCTAT
259 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTAT
* * * *
1171115 TTT-TTGTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCAAAACAGTCTCAAT
324 TTTCCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCTCCAT
*
1171179 TATTTTCAAGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACATGACATTGATGCTTTGG
387 TATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
*
1171244 TGTCATAAGAAAAGCTTTTCTTT
452 TGTCACAAGAAAAGCTTTTCTTT
** * *
1171267 CCTTCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * **
1171332 CACCTTTCTTTTC-GAGACTAGGCACCAAAAAGATAGTCTTCTCACTATGATATGTA--ATATTG
66 CCCCTTTCTTTTCAG-GATTAGGCACCATAAACATAGTCTTCTCA-TAAG-TATACACGATATTG
* * * *** * * * * * *
1171394 ATGTTTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTCCATGAAGTATAAGTCCTTGCCTT
128 ATGCTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTC
* * * * * * *
1171459 AGATGAGACAAAAATGGATTCTAGTAACGATCTTCATTCATTTTTTGGTTA-AGCACTAT-AACA
192 AAATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGA-CACTATAAACA
* *
1171522 CCTTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCCT-AGAAATCTTTTCTTTAG-
256 CATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGA-AAATCTTTTCTTT-GC
* * * *
1171585 CCTATTTTCTTTAAAATCAAAGTTCATCCCTCAAAAAAGCCAAGCATCGATTCTCAAAATAGTCT
319 CCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAA-AGTCT
* *
1171650 CCATTATTTTCCAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC-TATGAGGC
383 CCATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT-TGATGC
*
1171714 TTTGGTGTTACAAGAAAAGCTTTTCTTT
447 TTTGGTGTCACAAGAAAAGCTTTTCTTT
* * *
1171742 CCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * * * * * *
1171807 CCCCATTCTTTTTAGGATTAGGTACCAAAAACGTGGTCTTCTAATAAGGATACACGATATTGGTA
66 CCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
* * ** * * *
1171872 CTTTGGTTTCATATGAAAGGGTTTCATCCCACTAGTTTTTGTAAAATCTAAGTTCACGCCTCAAA
131 CTTTGGTTTCGTAAGAAA-GGTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTC-AA
* *
1171937 ATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
194 ATAAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACAT
** * * *
1172002 TCTTTTCACTAGGATAAATGATATTAATGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCCTAC
259 TCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA-
* * * *
1172065 CTTT-CTTAAAATCAAAGTTCATCCCTTAAATATGACAGGAATCGATTCTCGTAACAAA--CTCC
323 TTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTC--AA-AAAGTCTCC
* ** * * *
1172127 ATTCCTTCCCAAGATTGGGAACCAAAAACAC-TTTCC-TCTATTTAGGATACATGACATTGACGC
385 ATT-ATTTTCAAGATTGGGAACCTAAAACACATTCCCTTC-A-TTAGGATACATGACATTGATGC
*
1172190 TTTGGTGTCGCAAGAAAAGCTTTTTCTTT
447 TTTGGTGTCACAAGAAAAGC-TTTTCTTT
* * * * * * * * *
1172219 CCACTGTTTTTTATAGAATCAGAGTGT-T-TCTTAAATAAGACAAACTTGAACACTCCTACCAAT
1 CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
* * * * * ** * *
1172282 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAA-AATACGTGAAATTTAT
66 CCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATACACGATATTGAT
* * * * * * *
1172346 GTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTG-AAAAGCCTAAGTTCGTGCCTCA
130 GCTTTGGTTTCGTAAGAAAGG-TTTTTTCCCACCAATTTTTGTAAAA-TCTAAGTTCATGCCTCA
* * * *
1172410 AATGAGACAAA-ATGGATTCTCGTAAAGATCTTCAT
193 AATAAGACAAACATAGATTCTAGTAATGATCTTCAT
1172445 ATTGATGATT
Statistics
Matches: 2179, Mismatches: 376, Indels: 102
0.82 0.14 0.04
Matches are distributed among these distances:
473 27 0.01
474 145 0.07
475 1154 0.53
476 554 0.25
477 290 0.13
478 6 0.00
479 3 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
CCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATAGTCATACTAAT
CCCCTTTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGATG
CTTTGGTTTCGTAAGAAAGGTTTTTTCCCACCAATTTTTGTAAAATCTAAGTTCATGCCTCAAAT
AAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGACACTATAAACACATTC
TCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT
TCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATCGATTCTCAAAAAGTCTCCATTATT
TTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC
ACAAGAAAAGCTTTTCTTT
Found at i:1171325 original size:950 final size:941
Alignment explanation
Indices: 1169369--1172444 Score: 3627
Period size: 950 Copynumber: 3.2 Consensus size: 941
1169359 CTAACACCAC
*
1169369 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAAT-CCT
1 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCC
* * * * * * *
1169433 TATTCTTTGCAATAGTAGGGACCATAAACATAGTCTGCTCTTTAAG-ATAGGTAATATTGATGTT
66 T-TTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATA--CAATATTGATGTT
** * ** * *
1169497 TTGGTTTCGTAAGAAAAACATTTTTCCCACCAATTTTTCTAAAGTCTATTTTCGTGCCTCAAATT
127 TTGGTTTCGTAAGAAAGGCATTTTTCCCACCAA-TTTTATAAAGTCTAAGTTCATGCCTCAAATA
* *
1169562 AGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGGA-ACTATTAACGCATTC
191 AGACAAACTA-GATTCTAGTAACGATCTTCATTCATTTTCTGATTA-GACACTA-TAACACATTC
* * * *
1169626 AT-CTTAGTAGGATAAA-CATATTGATGATTTTCTTTTG-TATGGAAATCTTTTCTTTACCTTAT
253 -TCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCT-TGAAAATCTTTTCTTTGCCCTAT
* * *
1169688 TTTCCTTTAAATCAAAGTTCACCCCTTAAAAATGACAAGCATCGATTCTCAAAACAGTCTCCATT
316 TTTCCTTAAAATCAAAGTTCATCCCTCAAAAA-GACAAGCATCGATTCTCAAAACAGTCTCCATT
* * *
1169753 ATTTTCAAGATTGGGAACCTAAAATACATTCCCTTTACTAGGATACATGACATTGAGGCTTTGGT
380 ATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTGGT
* * * *
1169818 GTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAATTTTTTTTCTTAAATAAGAT
445 GTCACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA-TTTATCT-TTAAATAAGAA
* * * *
1169883 AAACATGAATAGTCAAACTAATCCCTATTTTTTTTCAGGATTAGGCACCATAAACATAGTCTTTT
508 AAACATGAATAGTCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCT
* * * *
1169948 CATAAGGATACACGATATTGATGCTTTGCTTTCATATGTATGAGTTTCTTCCCACCAATTTTTGT
572 CATAAGGATACACGATATTGATGCTTTGGTTTCATATGAAAG-GATT-TTCCCACCAATTTTTGT
* * * *
1170013 AAAATCTAAGTTCGTGCCTCAAATGAGACAAACATTGATTATAGTAATAATCTTCATTCATTTTG
635 AAAATCTAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTG
* * * *
1170078 TGATTAGGCACCATAAACATATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCAC
700 TGATTAGGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCAT
*
1170143 GAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATC
765 GAAAATCTTTTCTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATC
* * * * *
1170208 AATTCTCGTAACAATCTCCATTCCTTCCTAGATTGGGAACCAAAAACATATTCCCTTCATTAGGA
830 GATTCTCGTAACAATCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGA
* **
1170273 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGGTTTTCACTCCA
895 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * * *
1170320 CCGTTTCTAATAAAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCC
1 -CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCC
* * *
1170385 CTTTATTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACACGATATTGGTGCTT
65 CTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACA--ATATTGATGTTT
* ** * * *
1170450 TGGATTCGTAAGAAAGGTTTTTTTCCCACCAATTATTATAAACTCTAAGTTCATGCCACAAACAA
128 TGGTTTCGTAAGAAAGGCATTTTTCCCACCAATT-TTATAAAGTCTAAGTTCATGCCTCAAATAA
* * **** * * *
1170515 AACAAACGTAGATTATAGCGGTGATCTTCATCCATTTTGTGACTAGACACTATAAACACATTCTC
192 GACAAAC-TAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGACACTAT-AACACATTCTC
*
1170580 CTTAGTAGGATAAATGATATTGATGATTTT-TTTTGCTTGAAAATTTTTTCTTTGCCCTATTTTC
255 CTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTC
* * *
1170644 CCTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCGATTCTTAAAAGAGTCTCCATTATTT
320 CTTAAAATCAAAGTTCATCCCTCAAA-AAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTT
* *
1170709 TCAAGATTGGGAACCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
384 TCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCA
* * * * *
1170774 CAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTCACCTTTGAAACAAGAAAAAG
449 CAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAA-TTTATCTTT-AAATAAGAAAAAC
* * * * *
1170839 ATGAATACTCATACCAATCCCCAGTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTA
512 ATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAA
* ** * ** * * *
1170904 TGATATGCGATATTGATGTTTTGGTTTCGCAAGAAAGGCATTTTCCCACCAATTTTTGTGAAGTC
577 GGATACACGATATTGATGCTTTGGTTTCATATGAAAGG-ATTTTCCCACCAATTTTTGTAAAATC
* * * * * * * *
1170969 TAAGTTCATGCCTCAATTTAGGCAAACATGGATTCTTGTAACGATCTTCATTCAATTTATGATTA
641 TAAGTTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * *
1171034 GGCACTATACACACATTCTCCTCAGTAGGGTAAATGATATTGATGATTTTCTTTTGCATGAAAAT
706 GGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAAT
* * * * *
1171099 CTTTTCTTTACCCTA-TTTTTTGTAAAATCGAAGTTCATCCCTTAAATAAGACAAGCATTGATTC
771 CTTTTCTTTGCCCTACTTTTCT-TAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTC
** * * * * *
1171163 TCAAAACAGTCTCAATTATTTTCAAGATTGGGAACCTAAAACACATTCCTTTCATTAGGATACAT
835 TCGTAACAATCTCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACAT
** *
1171228 GACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTCTTTCCTT
900 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC-A
* * * *
1171271 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAGTAGTCATACTAATCACC
1 CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCC
* * * * * **
1171336 TTTCTTTTCGAGACTAGGCACCAAAAAGATAGTCTTCTCACTATGATATGTAATATTGATGTTTT
66 TTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCA-TAAG-TATACAATATTGATGTTTT
* * * * * * * * *
1171401 GGTTTCGCAAGAAAGGCATTTTTCCCACCAATTTCCATGAAGTATAAGTCCTTGCCTTAGATGAG
129 GGTTTCGTAAGAAAGGCATTTTTCCCACCAATTT-TATAAAGTCTAAGTTCATGCCTCAAATAAG
* * * * *
1171466 ACAAAAATGGATTCTAGTAACGATCTTCATTCATTTTTTGGTTA-AGCACTATAACACCTTCTCC
193 AC-AAACTAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGA-CACTATAACACATTCTCC
* *
1171530 TCAGTAGGATAAATGATATTGATGATTTTCTTTTGCCT-AGAAATCTTTTCTTTAG-CCTATTTT
256 TTAGTAGGATAAATGATATTGATGATTTTCTTTTGCTTGA-AAATCTTTTCTTT-GCCCTATTTT
* * *
1171593 CTTTAAAATCAAAGTTCATCCCTCAAAAAAGCCAAGCATCGATTCTCAAAATAGTCTCCATTATT
319 CCTTAAAATCAAAGTTCATCCCTC-AAAAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATT
*
1171658 TTCCAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC-TATGAGGCTTTGGTGT
383 TTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT-TGAGGCTTTGGTGT
* *
1171722 TACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATAAGACAA
447 CACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATC-AAATTTATCT-TTAAATAAGAAAA
* * * * * * *
1171787 ACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATTAGGTACCAAAAACGTGGTCTTCTAAT
510 ACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCAT
* * * * *
1171852 AAGGATACACGATATTGGTACTTTGGTTTCATATGAAAGGGTTTCATCCCACTAGTTTTTGTAAA
575 AAGGATACACGATATTGATGCTTTGGTTTCATATGAAAGGATTT--TCCCACCAATTTTTGTAAA
*
1171917 ATCTAAGTTCACGCCTCAAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTG
638 ATCTAAGTTCATGCCTC-AAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTG
** * *
1171982 ATTAGGCACTATAAACACATTCTTTTCACTAGGATAAATGATATTAATGA-TTT-TTTTGCATGG
702 ATTAGGCACTATAAACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCATGA
* * *
1172045 AAATCTTTTCTTTGCCCTACCTTTCTTAAAATCAAAGTTCATCCCTTAAATATGACAGGAATCGA
767 AAATCTTTTCTTTGCCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGA
* * * *
1172110 TTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGAACCAAAAACACTTTCCTCT-ATTTAGGA
832 TTCTCGTAACAATCTCCATT-CTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCA-TTAGGA
*
1172174 TACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCTTTCCA
895 TACATGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTCCA
* * * * * *
1172222 CTGTTTTTTATAGAATCAGAG--TGTTTCTTAAATAAGACAAACTTGAACACTCCTACCAATCCC
1 C-GTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCC
* * * * * * *
1172285 CATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAA-AATACGTGAA-ATTTATGT
65 CTTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC-ATAAGTATAC---AATATTGATGT
* * * * *
1172348 TTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTT-TGAAAAGCCTAAGTTCGTGCCTCAAA
126 TTTGGTTTCGTAAGAAAGGCATTTTTCCCACCAATTTTAT--AAAGTCTAAGTTCATGCCTCAAA
* * * * *
1172412 TGAGACAAAATGGATTCTCGTAAAGATCTTCAT
189 TAAGACAAACTAGATTCTAGTAACGATCTTCAT
1172445 ATTGATGATT
Statistics
Matches: 1787, Mismatches: 295, Indels: 87
0.82 0.14 0.04
Matches are distributed among these distances:
948 3 0.00
949 75 0.04
950 950 0.53
951 202 0.11
952 536 0.30
953 21 0.01
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (941 bp):
CGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCC
TTTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATAAGTATACAATATTGATGTTTTGG
TTTCGTAAGAAAGGCATTTTTCCCACCAATTTTATAAAGTCTAAGTTCATGCCTCAAATAAGACA
AACTAGATTCTAGTAACGATCTTCATTCATTTTCTGATTAGACACTATAACACATTCTCCTTAGT
AGGATAAATGATATTGATGATTTTCTTTTGCTTGAAAATCTTTTCTTTGCCCTATTTTCCTTAAA
ATCAAAGTTCATCCCTCAAAAAGACAAGCATCGATTCTCAAAACAGTCTCCATTATTTTCAAGAT
TGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGAGGCTTTGGTGTCACAAGAAA
AGCTTTTCTTTCCACTGTTTTTGATAGAATCAAATTTATCTTTAAATAAGAAAAACATGAATAGT
CATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACG
ATATTGATGCTTTGGTTTCATATGAAAGGATTTTCCCACCAATTTTTGTAAAATCTAAGTTCATG
CCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAA
ACACATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTG
CCCTACTTTTCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGAATCGATTCTCGTAACAATC
TCCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCTTTCATTAGGATACATGACATTGATGC
TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
Found at i:1172822 original size:422 final size:421
Alignment explanation
Indices: 1172022--1172867 Score: 999
Period size: 422 Copynumber: 2.0 Consensus size: 421
1172012 AGGATAAATG
*
1172022 ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTGCCCTACCTTTCTTAAAATCAAAGTTCAT
1 ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCAT
* * * * ** *
1172087 CCCTTAAATATGACAGGAATCGATTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGAACCAA
66 CCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCAA
*
1172152 AAACACTTTCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
131 AAACACTTCCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
* * * * *
1172217 TTCCACTGTTTTTTATAGAATCAGAGTGTTTCTTAAATAAGACAAACTTGAACACTCCTACCAAT
196 TTCCACCGTTTTTGATAGAATCAAAATGTTTCTTAAATAAGACAAACTTCAACACTCCTACCAAT
* * ** *
1172282 CCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAAAATACGTGAAATTTATG
261 CCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAAAATACACGAAATTGATG
* * * * *
1172347 TTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGAAAAGCCTAAGTTCGTGCCTCAAA
326 CTTTGGTTTCACAAGAAAGG-ATTTATCCCACTAATTTTTGAAAAGCCTAAGTTCGTACCTCAAA
* *
1172412 TGAGACAAA-ATGGATTCTCGTAAAGATCTTC
390 TGAGACAAACATGGATTCTAGTAAAAATCTTC
* * **
1172443 ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTATCCTATTTTTCTTAAAATCAAAGTTCA
1 ATATTAATGA-TTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCA
* * * ** * * * * *
1172508 TCCCTTAAAAAAGGCAAGCATCGATTCCCAAAATAGTCTCCTTTATTTTCC-GGATTGGGAACCT
65 TCCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCA
* * *
1172572 AATACACATTCCCTTTA-TTAGGATACATGAC-TATGAGGCTTTGGTGTCGCAAGAAAAGC-TTT
130 AAAACAC-TTCCCTCTATTTAGGATACATGACAT-TGACGCTTTGGTGTCGCAAGAAAAGCTTTT
* * *
1172634 TCTTTCCACCGTTTTTGATAGAATCAAAATTTACTTCTTAAATAAGACAAACTTCAATAGTCAC-
193 TCTTTCCACCGTTTTTGATAGAATCAAAATGT--TTCTTAAATAAGACAAACTTCAACACTC-CT
* * * * * * *
1172698 ACTAATCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTC-ATAATGATACACGAT
255 ACCAATCCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAA-AATACACGAA
* * * * *
1172762 ATTGATGCTTTGGTTTCATATGAAAAGG-TTTCATCCCCCTAGTTTTTGTAAAA-TCTAAGTTCG
319 ATTGATGCTTTGGTTTCACAAG-AAAGGATTT-ATCCCACTAATTTTTG-AAAAGCCTAAGTTCG
*
1172825 TACCTCAAATGAGACAAACGTGGATTCTAGTAAAAATCTTC
381 TACCTCAAATGAGACAAACATGGATTCTAGTAAAAATCTTC
1172866 AT
1 AT
1172868 TCATTTTGTG
Statistics
Matches: 355, Mismatches: 59, Indels: 20
0.82 0.14 0.05
Matches are distributed among these distances:
420 31 0.09
421 71 0.20
422 222 0.63
423 31 0.09
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.36
Consensus pattern (421 bp):
ATATTAATGATTTTTTTGCATGGAAATCTTTTCTTTACCCTACCTTTCTTAAAATCAAAGTTCAT
CCCTTAAAAAAGACAAGAATCGATTCCCAAAACAAACTCCATTACTTCCCAAGATTGGGAACCAA
AAACACTTCCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTTTTTCT
TTCCACCGTTTTTGATAGAATCAAAATGTTTCTTAAATAAGACAAACTTCAACACTCCTACCAAT
CCCCATTCTTTCCAGAATTAGGCACCATAAACATAGTATTCTCTATAAAATACACGAAATTGATG
CTTTGGTTTCACAAGAAAGGATTTATCCCACTAATTTTTGAAAAGCCTAAGTTCGTACCTCAAAT
GAGACAAACATGGATTCTAGTAAAAATCTTC
Found at i:1173351 original size:478 final size:474
Alignment explanation
Indices: 1172443--1173378 Score: 1090
Period size: 478 Copynumber: 2.0 Consensus size: 474
1172433 AAAGATCTTC
* * *
1172443 ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTATCCTATTTTTCTTAAAATCAAAGTTCA
1 ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTCA
* * * * * * * *
1172508 TCCCTTAAAAAAGGCAAGCATCGATTCCCAAAATAGTCTCCTTTATTTTCCGGATTGGGAACCTA
66 TCCCTTAAAAAAGACAAGCATCAATTCCCAAAACAATCTCCATTACTTCCCAGATTGGGAACCTA
* * *
1172573 ATACACATTCCCTTTATTAGGATACATGACTATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
131 AAACACATTCCCTTTATTAGGATACATGACTATGAGGCTTTCGTGTCGCAAGAAAAGCTTTTCTA
* *
1172638 TCCACCGTTTTTGATAGAATCAAAATTTACTTCTTAAATAAGACAAACTTCAATAGTCACACTAA
196 TCCACCGTTTTTGATAGAATCAAAATTTACTTCTTAAATAAGACAAACTTCAATACTCACACCAA
*
1172703 TCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAATGATACACGATATTGAT
261 TCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAATGATACACGAAATTGAT
* * * * **
1172768 GCTTTGGTTTCATATGAAAAGGTTTCATCCCCCTAGTTTTTGTAAAATCTAAGTTCGTACCTCAA
326 GCTTTGGTTTCACAAGAAAAGGTTT-ATCCCACTAGTTTTTGTAAAATCTAAATTAATACCTCAA
** * * **
1172833 ATGAGACAAACGTGGATTCTAGTAAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACAT
390 ATGAGACAAAAATAGATTCTAGTAAAAACCTTCATTCATTTTGTGATTAAACACTATAAACACAT
1172898 TCTTCTCACTAGGATAAATG
455 TCTTCTCACTAGGATAAATG
* * *
1172918 ATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTG
1 ATATTGATGATTTT-TTTTGCATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTC
* * * * ** *
1172983 ATCCCTTGAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGAA-C
65 ATCCCTTAAAAAAGACAAGCATCAATTCCCAAAACAATCTCCATTACTTCCC-AGATTGGGAACC
*
1173047 TAAAAACACATT-CCTTTCTTTAGGATACATGAC-ATTG-GTGCTTTCGTGTCGCAAGAAAAGCT
129 T-AAAACACATTCCCTTT-ATTAGGATACATGACTA-TGAG-GCTTTCGTGTCGCAAGAAAAGC-
* * * *
1173109 TTTTCTATCCACCGTTTTTGATAGAATC-AAAGTT-CGTCTCTTAAATATGACAAGCTTGAATAC
189 TTTTCTATCCACCGTTTTTGATAGAATCAAAATTTAC-T-TCTTAAATAAGACAAACTTCAATAC
* * *
1173172 TC-CTACCAAT-CGCCA-TTTTTTCTAGGATTAGGCACCATAAACATAGTCTTCTCTTTAA-GGT
252 TCAC-ACCAATCCG-CATTTTTTTC-AGAATTAGGCACCATAAACATAGTCTTCTC-ATAATGAT
* * * * *
1173233 ACGCGAAATTGATGTTTTGGTTTCCCAAG-AATGGCATTT-TCCCTACTAAG-TTTTGTAAAGTC
313 ACACGAAATTGATGCTTTGGTTTCACAAGAAAAGG--TTTATCCC-ACT-AGTTTTTGTAAAATC
* ** **
1173295 TAAATTAATACCTCAGATGAGACAAAAATAGATTCTCA-TAACGACCTTTGTTCATTTTGTGATT
374 TAAATTAATACCTCAAATGAGACAAAAATAGATTCT-AGTAAAAACCTTCATTCATTTTGTGATT
1173359 AAACACTATAAACACATTCT
438 AAACACTATAAACACATTCT
1173379 CATTTGCCGT
Statistics
Matches: 386, Mismatches: 57, Indels: 33
0.81 0.12 0.07
Matches are distributed among these distances:
475 14 0.04
476 92 0.24
477 79 0.20
478 192 0.50
479 9 0.02
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATATTGATGATTTTTTTTGCATGGAAATCTTTTCTTTACCCTACTTTCCTTAAAATCAAAGTTCA
TCCCTTAAAAAAGACAAGCATCAATTCCCAAAACAATCTCCATTACTTCCCAGATTGGGAACCTA
AAACACATTCCCTTTATTAGGATACATGACTATGAGGCTTTCGTGTCGCAAGAAAAGCTTTTCTA
TCCACCGTTTTTGATAGAATCAAAATTTACTTCTTAAATAAGACAAACTTCAATACTCACACCAA
TCCGCATTTTTTTCAGAATTAGGCACCATAAACATAGTCTTCTCATAATGATACACGAAATTGAT
GCTTTGGTTTCACAAGAAAAGGTTTATCCCACTAGTTTTTGTAAAATCTAAATTAATACCTCAAA
TGAGACAAAAATAGATTCTAGTAAAAACCTTCATTCATTTTGTGATTAAACACTATAAACACATT
CTTCTCACTAGGATAAATG
Found at i:1173643 original size:904 final size:890
Alignment explanation
Indices: 1171567--1174125 Score: 3046
Period size: 904 Copynumber: 2.8 Consensus size: 890
1171557 TTCTTTTGCC
* * * * *
1171567 TAGAAATCTTTTCTTTAGCCTATTTTCTTTAAAATCAAAGTTCATCCCTCAAAAAAGCCAAGCAT
1 TAGAAAACTTCTCTTTAGCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCAT
*
1171632 CGATTCTCAAAATAGTCTCCATTATTTTCCA-GATTGGGAACCTAAAACACATTCCCTTCATTAG
66 CGATTCTCAAAATAGTCTCTATTATTTT-CAGGATTGGGAACCTAAAACACATTCCCTTCATTAG
**
1171696 GATACATGACTATGAGGCTTTGGTGTTACAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAAT
130 GATACATGACTATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAAT
*
1171761 CAAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAATCCCCATTCTTTTTAGGATT
195 CAAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAAT-CCCATTCTTTTTA-AATT
* * * * * * * *
1171826 AGGTACCAAAAACGTGGTCTTCTAATAAGGATACACGATATTGGTACTTTGGTTTCATATGAAAG
258 AGGCACCATAAACATAGTCTTCTCATAA-GATACACGATATTGATGCTTTGGTTTCATATGAAAA
* ** *
1171891 GGTTTCATCCCACTAGTTTTTGTAAAATCTAAGTTCACGCCTCAAAATGAGACAAACATAGATTC
322 GGTTTCATCCCCCTAGTTTTTGTAAAATCTAAGTTCGTGCCTC-AAATGAGACAAACATGGATTC
* *
1171956 TAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTTTCACTAGGATAAAT
386 TAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAAT
*
1172021 GATATTAATGA-TTT-TTTTGCATGGAAATCTTTTCTTTGCCCTACCTTT-CTTAAAATCAAAGT
451 GATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA-CTTTCCTTAAAATCAAAGT
* * *
1172083 TCATCCCTTAAATATGAC-AGGAATCGATTCTCGTAACAAACTCCATTCCTTCCCAAGATTGGGA
515 TCATCCCTTAAATAAGACAAGG-ATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGA
* * * * *
1172147 ACCAAAAACACTTTCCTCTATTTAGGATACATGACATTGACGCTTTGGTGTCGCAAGAAAAGCTT
579 ACTAAAAACACATTCCTTTCTTTAGGATACATGACATTG-GGCTTTGGTGTCGCAAGAAAAGCTT
* * * * *
1172212 TTTCTTTCCACTGTTTTTTATAGAATCAGAG-TGTTTCTTAAATAAGACAAACTTGAACACTCCT
643 TTTC-TTCCACCGTTTTTGATAGAATCAAAGTTGTCTCTTAAAT-AGAC-AACTTGAATACTCCT
* * *
1172276 ACCAATCCCCATTCTTTCCAGGATTAGGCACCATAAACATAGTATTCTCTTTAAAATACGTGAAA
705 ACCAATCCCCATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAAATACGCGAAA
* * * * * ** *
1172341 TTTATGTTTTGGTTTCGCAAGAAAGGCATTTTTCTCACTAATTTTTGAAAAGCCTAAGTTCGTGC
769 TTGATGTTTTGGTTTCCCAAGAAAGGCATTTTCCTCACTAAGTTTTGAAAAGCCTAAATTAATAC
* * * **
1172406 CTCAAATGAGACAAAATGGATTCTCGTAAAGATCTTCATATTGATGATTTTTTTTGCA
834 CTCAAATGAGACAAAATAGATTCTCATAAAGATC-TCATATTGATCATTTTTTTAACA
* * * * * *
1172464 TGGAAATCTTTTCTTTATCCTATTTTTCTTAAAATCAAAGTTCATCCCTTAAAAAAGGCAAGCAT
1 TAGAAAACTTCTCTTTAGCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCAT
* * * *
1172529 CGATTCCCAAAATAGTCTCCT-TTATTTTCCGGATTGGGAACCTAATACACATTCCCTTTATTAG
66 CGATTCTCAAAATAGTCT-CTATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAG
*
1172593 GATACATGACTATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
130 GATACATGACTATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAAT
* *
1172658 CAAAATTTA-CTTCTTAAATAAGACAAACTTCAATAGTCACACTAATCCGCATT-TTTTTCAGAA
195 CAAAATTTATC-TCTTAAATAAGACAAACTTGAATAGTCATACTAATCC-CATTCTTTTT-A-AA
1172721 TTAGGCACCATAAACATAGTCTTCTCATAATGATACACGATATTGATGCTTTGGTTTCATATGAA
256 TTAGGCACCATAAACATAGTCTTCTCATAA-GATACACGATATTGATGCTTTGGTTTCATATGAA
* *
1172786 AAGGTTTCATCCCCCTAGTTTTTGTAAAATCTAAGTTCGTACCTCAAATGAGACAAACGTGGATT
320 AAGGTTTCATCCCCCTAGTTTTTGTAAAATCTAAGTTCGTGCCTCAAATGAGACAAACATGGATT
*
1172851 CTAGTAAAAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAA
385 CTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAA
*
1172916 TGATATTGATGATTTTCTTTTGCATGGAAATTTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGT
450 TGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGT
* *
1172981 TGATCCCTTGAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGAA
515 TCATCCCTTAAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGAA
*
1173046 CTAAAAACACATTCCTTTCTTTAGGATACATGACATTGGTGCTTTCGTGTCGCAAGAAAAGCTTT
580 CTAAAAACACATTCCTTTCTTTAGGATACATGACATTGG-GCTTTGGTGTCGCAAGAAAAGCTTT
1173111 TTCTATCCACCGTTTTTGATAGAATCAAAGTTCGTCTCTTAAATATGACAAGCTTGAATACTCCT
644 TTCT-TCCACCGTTTTTGATAGAATCAAAGTT-GTCTCTTAAATA-GACAA-CTTGAATACTCCT
* **
1173176 ACCAATCGCCATTTTTTCTAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAGGTACGCGAAA
705 ACCAATCCCCATTTTTTC-AGGATTAGGCACCATAAACATAGTCTTCTCTTTAAAATACGCGAAA
* * *
1173241 TTGATGTTTTGGTTTCCCAAGAATGGCATTTTCC-CTACTAAGTTTTGTAAAGTCTAAATTAATA
769 TTGATGTTTTGGTTTCCCAAGAAAGGCATTTTCCTC-ACTAAGTTTTGAAAAGCCTAAATTAATA
* * *
1173305 CCTCAGATGAGACAAAAATAGATTCTCATAACGA-C-C-T-TTGTTCATTTTGTGATTAAACA
833 CCTCAAATGAGAC-AAAATAGATTCTCATAAAGATCTCATATTGATCATTTT-T--TT-AACA
* * **
1173364 CTATAAACACATTCTCATTT-GCCGTATTTTCCTTAAAATCAAAATTCATCCCTTAAACCAGACA
1 -TAGAAA-AC-TTCTC-TTTAGCC-TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACA
** * * * * * *
1173428 AGTGTCAATTTTCAAAATAGTCTCTATTATTTTTAGGATCGGGAACCGAAAACACCTTCCCTTCA
61 AGCATCGATTCTCAAAATAGTCTCTATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCA
* * * *
1173493 TTAGGATACATGAC-ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTCCTTTCTATTGTTTTTGAT
126 TTAGGATACATGACTA-TGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGAT
* ** * *
1173557 AGAATCAAAATTCATCTCTTAAATAAGACAAACAAGAATACTCATACCAATCCCAATTCTTTTTA
190 AGAATCAAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAATCCC-ATTCTTTTTA
* * * * * * *
1173622 ATATTGGGGACCATAAACATAGTCTTCTCTTTAAGAT-CTGCAATATCGATGTTTTGGTTTTGC-
254 A-ATTAGGCACCATAAACATAGTCTTCTC-ATAAGATAC-ACGATATTGATGCTTTGG-TTT-CA
* ** * * * * *
1173685 GA-GAAAGACAATTT--TCCTACC-AATTTTTGTAAAGTCTAAGTCCGTGCCTTAAATGAGACAA
314 TATGAAA-A-GGTTTCATCC-CCCTAGTTTTTGTAAAATCTAAGTTCGTGCCTCAAATGAGACAA
* * ** * * * * *
1173746 ATAAGGATTCTAGTAGCGATCTTCATTCATTTTCTGATTAAGAACTATAAACACATTCTCCTCAG
376 ACATGGATTCTAGTAAAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCAC
* * **
1173811 TAGGATAATTGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTACCCTTTTTTCCTTAA
441 TAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAA
* * * * ** * **
1173876 AATCAAAGTTCATCCCTTAAAAAAGATAAGCATCTATTCTCAAAACAATCTCCATT-ATTTTCAA
506 AATCAAAGTTCATCCCTTAAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAA
* * * * * *
1173940 GATTGGGAACCT-AAAACACATTCCCTTCATTAAGATACGTGACATTAAGGCTTTGGTGTCACAA
571 GATTGGGAA-CTAAAAACACATTCCTTTCTTTAGGATACATGACATT-GGGCTTTGGTGTCGCAA
* * * * * * *
1174004 GAAAA--TTTTTCCTTCCACCATTTTGGATAGAATGAAAATTTTTCTCTTAAATACAGCAAATAT
634 GAAAAGCTTTTT-CTTCCACCGTTTTTGATAGAAT-CAAAGTTGTCTCTTAAATAGA-CAACT-T
* * * *
1174067 GAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATGGTCTTCTC
695 GAATACTCCTACCAATCCCCATT-TTTTCAGGATTAGGCACCATAAACATAGTCTTCTC
1174126 ATAAGGATGC
Statistics
Matches: 1441, Mismatches: 174, Indels: 90
0.85 0.10 0.05
Matches are distributed among these distances:
896 109 0.08
897 332 0.23
898 183 0.13
899 14 0.01
900 147 0.10
901 107 0.07
902 13 0.01
903 74 0.05
904 442 0.31
905 16 0.01
906 4 0.00
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.35
Consensus pattern (890 bp):
TAGAAAACTTCTCTTTAGCCTATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGCAT
CGATTCTCAAAATAGTCTCTATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGG
ATACATGACTATGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATC
AAAATTTATCTCTTAAATAAGACAAACTTGAATAGTCATACTAATCCCATTCTTTTTAAATTAGG
CACCATAAACATAGTCTTCTCATAAGATACACGATATTGATGCTTTGGTTTCATATGAAAAGGTT
TCATCCCCCTAGTTTTTGTAAAATCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTA
AAGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTTCTCACTAGGATAAATGATAT
TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCC
CTTAAATAAGACAAGGATCAATTCTCGTAACAATCTCCATTCCTTCCCAAGATTGGGAACTAAAA
ACACATTCCTTTCTTTAGGATACATGACATTGGGCTTTGGTGTCGCAAGAAAAGCTTTTTCTTCC
ACCGTTTTTGATAGAATCAAAGTTGTCTCTTAAATAGACAACTTGAATACTCCTACCAATCCCCA
TTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCTTTAAAATACGCGAAATTGATGTTTTGG
TTTCCCAAGAAAGGCATTTTCCTCACTAAGTTTTGAAAAGCCTAAATTAATACCTCAAATGAGAC
AAAATAGATTCTCATAAAGATCTCATATTGATCATTTTTTTAACA
Found at i:1174281 original size:475 final size:472
Alignment explanation
Indices: 1173388--1175317 Score: 1753
Period size: 475 Copynumber: 4.1 Consensus size: 472
1173378 TCATTTGCCG
* ** ** * * * *
1173388 TATTTTCCTTAAAATCAAAATTCATCCCTTAAACCAGACAAGTGTCAATTTTCAAAATAGTCTCT
1 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCAATTCTCAAAACAATCTCC
* * * * *
1173453 ATTATTTTTAGGATCGGGAACCGAAAACACCTTCCCTTCATTAGGATACATGACATTGATGCTTT
66 ATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* *** *
1173518 GGTGTCGCAAGAAAAGC-TTTCCTTTCTATTGTTTTTGATAGAATCAAAATTCATCTCTTAAATA
131 GGTGTCGCAAGAAAA-CTTTTCC-TTCCA-CCATTTTGATAGAATCAAAATTTATCTCTTAAATA
* * * * * * *
1173582 AGACAAACAAGAATACTCATACCAATCCCAATTCTTTTTAATATTGGGGACCATAAACATAGTCT
193 AG-CAAATATGAATAGTCATACCAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * *
1173647 TCTCTTTAAGATCTGCAATATCGATGTTTTGGTTTTGCGAGAAAGACAATTTTCCTACCAATTTT
257 TCTCTATAAGATCTG-AATATCGATGCTTTCGTTTTGCGAGAAAGACAATTTTCCCACCAAATTT
* * *
1173712 TGTAAAGTCTAAGTCCGTGCCTTAAATGAGACAAATAAGGATTCTAGTAGCGATCTTCATTCATT
321 TGTAAAATCTAAGTCCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATT
*
1173777 TTCTGATTAAGAACTATAAACACATTCTCCTCAGTAGGATAATTGATATTGATGATTTTCTTTTG
386 TTCTGATTAAGAACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTG
1173842 CATGGAAATCTTTTCTTTACCC
451 CATGGAAATCTTTTCTTTACCC
* * * *
1173864 TTTTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGATAAGCATCTATTCTCAAAACAATCTCC
1 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCAATTCTCAAAACAATCTCC
* * * * *
1173929 ATTATTTTCAAGATTGGGAACCTAAAACACATTCCCTTCATTAAGATACGTGACATTAAGGCTTT
66 ATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
* * * *
1173994 GGTGTCACAAGAAAATTTTTCCTTCCACCATTTTGGATAGAATGAAAATTTTTCTCTTAAATACA
131 GGTGTCGCAAGAAAACTTTTCCTTCCACCATTTT-GATAGAATCAAAATTTATCTCTTAAATA-A
* * * *
1174059 GCAAATATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCACCATAAACATGGTCTTC
194 GCAAATATGAATAGTCATACCAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTC
* * *** *
1174124 TC-ATAAGGATGCATG-ATATTGATGCTTTCG-TTT-CATATGAAAG-GGTTTCTTCCCCCCAAA
259 TCTATAA-GAT-C-TGAATATCGATGCTTTCGTTTTGC-GA-GAAAGACAATT-TTCCCACCAAA
* * *
1174184 TTTTGTAAAATCTAAGTTCGTGGCTTAAATGAGATAAACAAGGATTCTAGTAACGATCTTCATTC
318 TTTTGTAAAATCTAAGTCCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTC
1174249 ATTTTCTGATTAAGAACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTT
383 ATTTTCTGATTAAGAACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTT
*
1174314 TTGCATGGAAATCTTTTCTTTGCCC
448 TTGCATGGAAATCTTTTCTTTACCC
* * * * ** *
1174339 TACTTTCCTTAAAATCAAAGCTCATCCCTTAAATAAGACAAGAATCGATTCTCGTAACATTCTCC
1 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCAATTCTCAAAACAATCTCC
**
1174404 A-TACCTTCCCAA-ATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
66 ATTA--TTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * *
1174467 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGATTTTGATAGAATCAAAATTTGTCTCCTAAAT
129 TTGGTGTCGCAAGAAAA-CTTTTCCTTCCACC-ATTTTGATAGAATCAAAATTTATCTCTTAAAT
* * * * *
1174532 ----AAA-A-CAA-AGT--T--GAAT----A----GTTCAAGGTTTGGCACCATAAACATAGTC-
192 AAGCAAATATGAATAGTCATACCAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCT
* * * * ** * * * * * * * *
1174577 T-TCT-TAGGATATGCGATCTTAATGTTTTGGTTTCGCAAGAAAGCCATTTTTCCGACCAATTTT
257 TCTCTATAAGATCTG-AATATCGATGCTTTCGTTTTGCGAGAAAGACAATTTTCCCACCAAATTT
* * * * * * * *
1174640 TGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAAGATGGGTTCTAGTAATGATCTTCTTTCATT
321 TGTAAAATCTAAGTCCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATT
* * ** * * * *
1174705 TTGTGATTAAGTACTATAAACACATTCTTTTCAGCAGAATAAATTATATTAATGATTTTCTTTTG
386 TTCTGATTAAGAACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTG
* *
1174770 CATGGAAATCTGTTTTTTTTGCCC
451 CATGGAAATC--TTTTCTTTACCC
* * * * * * * *
1174794 TATGTTCCTTAAAATCAAAGTTCATCCTTTAAATAGGACAAG-CTTAGATTCTCAAAATAGTCTC
1 TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCA-ATTCTCAAAACAATCTC
* * * * * * * * *
1174858 CACTATTTTTAGGATTAGGAACCTAAAACACTTTCCCTCCATTAGCATACATGACATTGAAGCTT
65 CATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * * * * *
1174923 TAGTGTCGTAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAG-ATACAAAGTTTGTCTCTTAAAT
130 TGGTGTCGCAAGAAAA-CTTTTCCTTCCACC-ATTTTGATAGAAT-CAAAATTTATCTCTTAAAT
* * * * * **
1174987 AAGACAAACATAAATAGTCATACTAATCCCCATTCTTTTCAGGATTAGGCGGCATAAACATAGTC
192 AAG-CAAATATGAATAGTCATACCAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTC
** * * ***
1175052 TTCTC-ATAAGGATACATGACAT-T-GACACTTT-GGTTT-CATATGAAAG-GGTTTCTTCCCAC
256 TTCTCTATAA-GAT-C-TGA-ATATCGATGCTTTCGTTTTGC-GA-GAAAGACAATT-TTCCCAC
* * * * * * * * *
1175111 TAATTTTTGTAATATCTAAGTTCATACCTAAAATGAGACAAACATGGATTCTAGTAATGATCTTC
314 CAAATTTTGTAAAATCTAAGTCCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAACGATCTTC
* * *
1175176 ATTCATTTTGTGATTAAGCACTATAAACACATTCT-CTGCATTAGGATAAATGATATTGATGATT
379 ATTCATTTTCTGATTAAGAACTATAAACACATTCTCCT-CAGTAGGATAAATGATATTGATGATT
* * *
1175240 TTCTTTTGCTTGAAAATCTTTTCTTTTCCC
443 TTCTTTTGCATGGAAATCTTTTCTTTACCC
* * * * *
1175270 TGCTTTT-CTTAAAATCAAAGTTCTTCCCATAAATAAGATAAGAATCAA
1 T-ATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCAA
1175318 AAAACACATT
Statistics
Matches: 1197, Mismatches: 199, Indels: 116
0.79 0.13 0.08
Matches are distributed among these distances:
451 2 0.00
453 153 0.13
454 16 0.01
455 166 0.14
456 26 0.02
460 4 0.00
461 1 0.00
462 2 0.00
463 3 0.00
464 3 0.00
465 1 0.00
466 1 0.00
467 3 0.00
468 3 0.00
469 2 0.00
470 1 0.00
471 4 0.00
473 1 0.00
474 15 0.01
475 400 0.33
476 216 0.18
477 24 0.02
478 145 0.12
479 1 0.00
480 4 0.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.36
Consensus pattern (472 bp):
TATTTTCCTTAAAATCAAAGTTCATCCCTTAAAAAAGACAAGAATCAATTCTCAAAACAATCTCC
ATTATTTTCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
GGTGTCGCAAGAAAACTTTTCCTTCCACCATTTTGATAGAATCAAAATTTATCTCTTAAATAAGC
AAATATGAATAGTCATACCAATCCCAATTCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTC
TATAAGATCTGAATATCGATGCTTTCGTTTTGCGAGAAAGACAATTTTCCCACCAAATTTTGTAA
AATCTAAGTCCGTGCCTTAAATGAGACAAACAAGGATTCTAGTAACGATCTTCATTCATTTTCTG
ATTAAGAACTATAAACACATTCTCCTCAGTAGGATAAATGATATTGATGATTTTCTTTTGCATGG
AAATCTTTTCTTTACCC
Found at i:1176527 original size:476 final size:476
Alignment explanation
Indices: 1175609--1182448 Score: 4724
Period size: 476 Copynumber: 14.3 Consensus size: 476
1175599 GTAATGATCA
* * * * * * *
1175609 TCATACTAATCACCATTCTATTCAGGACTATGCACCATTAACATAGTCTTCTCATTAGGATACAT
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
* * * * *
1175674 GATATTGATGTTTTAGTTTCGCAAGGAAGGCATTCTTCCCACCAATTTTTGTGAAA-TCTAAGCT
66 GATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGT-AAAGTCTAAGTT
* * ** * * *
1175738 CATGCGTTAAACAAGACAAACCTGGATTCTAGTAATGATATTCTTTCATTTTATGATTAAGCACT
130 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACT
* * * * *
1175803 ATAAACATATTCTCCTTAATAAGATAAAT-ATTATTCATGATTTT-TTTTGCACGGAAATCTTTT
195 ATAAACACATTCTCCTCAATAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * ** * * * *
1175866 CTTTGCCCTATTTTCTTTAATGTCAAAGTTCATCCCATAAATAATACCAGCA-TGAATCCTCATA
259 CTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTG-ATTCTCATA
* * * ** * *
1175930 ACAGTCTCCATTATTTTCAGGATTTGGAACCTAAAACACTTTCACTTCATTACAAAACGTGACAT
323 ACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT
* * * * * *
1175995 TGATGCTTTGGTGTCGCAAGACATGCTTTTCATTCCACTGTTTGTGA-CGAAATCAAAGTTTGCC
388 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTTTGCC
**
1176059 TCTTAAATTGGACAAACATGAATAG
452 TCTTAAATAAGACAAACATGAATAG
* * * ** * * * *
1176084 TCATACCAATCCCCATTCTTTTCGGGATGAGGCACTGGAAACATAATATTCTCATAAGCACACAT
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
* * * * * * *
1176149 GACATTGATGCATTGGTTTCCCAAGAATGGCTTTCTTCCCCCCAATTTTTTTAAAGTCTACGTTC
66 GATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
* * * *
1176214 GTGCCTCAAA-GA-ATTCAAACATGGATTCTAATAACGATTTTCATTCATTTTATGATTAAGCAC
131 ATGCCTCAAATGAGA--CAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * * *
1176277 TATAAACACATTCTCCTTAGTAGGATAAATGATATTGATGATTTTCTTTTGGATTGAAATCTTTT
194 TATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * *
1176342 CTTTGCCCTACTTTCCTTAAAATCAAAGTCCATCCCTTAAATAAGATAAGCATTGATCCTCATAA
259 CTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAA
**
1176407 CAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCAATTCATTAGGATACATGACATT
324 CAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* ** * * * * * *
1176472 GATGCTTTGGTGCCATAAGAAAAGATTTTTTTTCCACCATTCTTGATAGAATCAAAGTTCGTCTC
389 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTC
* *
1176537 TTAAATAAGACAAACATAAATAC
454 TTAAATAAGACAAACATGAATAG
* * * * * * * * **
1176560 TGATA-TCAATCCCCATTCTTTTCAAGATTAGGCACCATAATCGTAGTCTTCTCTTTAGTATATG
1 TCATACT-AATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACA
* * * *
1176624 CGATATTGATGTTTTGGTTTCGCAAGAAAGG-TATTTTTCTCACCAATTTTTGTAAAGTCTAAGT
65 TGATATTGATGTATTGGTTTCGCAAGAAAGGCT-TTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * *
1176688 TCATGCCTCAAATGAGACAAACGTGGATTCTAGTAACGATCTTCATTCATTTTGTGATTAAGCAC
129 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * *
1176753 TGTAAACACATTCTCCTCAGTCA-GATAAATGATATT-ACTGATTTT-TGTTTGCGTGGAAATCT
194 TATAAACACATTCTCCTCAAT-AGGATAAATGATATTGA-TGATTTTCT-TTTGCATGGAAATCT
* *
1176815 TTTCTTTGCCCTATTTTCCATAAAATCAAAGTTCATCCCTTAAATAAGACAAGC-TTAGATTCTC
256 TTTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATT-GATTCTC
* * * * * *
1176879 AAAACAATCTCCATTAGTTTCAAGATTGGGAACCTAAAACACATTCCCTTTATTGGGATACATGA
320 ATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGA
* * **
1176944 CATTGA-GCCTTTGGTGTCACGAGAAAAGCTTTTCTTTCCATTGTTTTTGATAGAATCAAAGTTT
385 CATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTT
* * **
1177008 GTCTCTTAAACAAGGTAAACATGAATAG
449 GCCTCTTAAATAAGACAAACATGAATAG
* * * *
1177036 TCATACTAATCCCCATTCTTTTTAAGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACAC
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
* ** * * *
1177101 GATATTGATG-ATTTGCTTTCATATGAAAGTG-TTTCTTCCAACCAATTTTTGTAAAATCTAAGT
66 GATATTGATGTA-TTGGTTTCGCAAGAAAG-GCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * * * *
1177164 TCATTCTTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGTAT
129 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * * * * * * *
1177229 TATAAACTCATTCTCCTCATTAGAATATAA-GGTTTTAATGATTTTTTTTTGC-TCGAAAATCTT
194 TATAAACACATTCTCCTCAATAGGATA-AATGATATTGATGATTTTCTTTTGCAT-GGAAATCTT
* * * * * * *
1177292 TTCTTTGCCCTACTTTCCTTAAAATCAAAGTTTATCTCGTAAATAAGATAAGAATTTATTCTCGT
257 TTCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCAT
* * * ** * * *
1177357 AACAATCTTCATTCCTTCCCA-GATTGGGAAGCAAAAACATATTCCCTTCATTAGGATACATGAC
322 AACAGTCTCCATT-ATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC
* * *** * * * * *
1177421 ATTGATGAC-TTCGTGTCGCAAGAAAAGCATTTAACTCCACCGTTTCTAATAAAATCACAGTTTA
386 ATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTG
* * *
1177485 CCTCTTAGATAGGACAAACATGAATAA
450 CCTCTTAAATAAGACAAACATGAATAG
* * * * *
1177512 TCTTACTAAT-CCCATTTATTTTAAGGATTAGGCACCATAAACGTAGTCTTCTCAAAATCAAAGT
1 TCATACTAATCCCCA-TTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTC---AT--AAG-
* * * ** * * *** *
1177576 TTATCCCATTAGGATAAATGATACTGATAATTTTCTTTTGCATAGAAA-TCTTTCTT-TGTCCTA
59 -GAT-ACA-T--GAT-ATTG--A-TG-T-A-TTGGTTTCGCA-AGAAAGGCTTTCTTCCCACCAA
* * * * * * * * *
1177639 TTTTCCT-TAAAATCAAATTTTATCCCAT-AAATAAGATAAGCATTGATTCTCA-TAAT-AGTCT
111 TTTT--TGTAAAGTCTAAGTTCATGCC-TCAAATGAGACAAACATGGATTCT-AGTAATGA-TCT
* ** * * * * * * * * * *
1177700 ACATTCATTCCAAGATTAGGAACAAAAAACACATTC-CTTGCATTAGGATACATGACATTGATGC
171 TCATTCATTTTATGATTAAGCACTATAAACACATTCTCCT-CAATAGGATAAATGATATTGATGA
** * ** * * * *
1177764 TTTGGTGTCACATGAAAAGCTTTT-TATT--CC-ACCGTTT-GTGACAAAATCAAAGTT--TGCC
235 TTTTCTTTTGCATGGAAATCTTTTCT-TTGCCCTA-C-TTTCCT--TAAAATCAAAGTTCAT-CC
** * ** * * * * * ** * *
1177822 TCTTAAATTGGACAAACA-TGAATAGTGATACCAATCCCCATTCTTTTTGGGATTTGGTACCGT-
294 -CTTAAATAAGACAAGCATTG-ATTCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACC-TA
* * * * * * * * * *
1177885 AAACATAGTAT-TC-TCATAAGGAAACACGATATTGATGCATTGGTTTCCCAAGAAAGGC-TTTC
356 AAACACA-T-TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTC
* ** * * **
1177947 -TTCCTACCAATTTTTG-TA-AAGTCTAACTTTGTGCCTC--AAATGAGACAAACATGGATTC
419 TTTCC-ACC-GTTTTTGATAGAA-TC-AAAGTT-TGCCTCTTAAATAAGACAAACATGAATAG
* * ** *
1178005 TAATAAC-GATCTTCATTCATTTT--GTGATTAAGCACTATAAACA-AGT-TCTCTTCCATAA-G
1 TCAT-ACTAATCCCCATTC-TTTTCAG-GATTAGGCACTATAAACATAGTCT-TC-T-CATAAGG
* * * ** ** *
1178064 ATAAATGATATTGATG-ATT-TTCTTATGCATAG-AATTCTTTTCTTTGC-CCTATTTTCCT-TA
60 ATACATGATATTGATGTATTGGT-TT-CGCA-AGAAAGGC-TTTCTTCCCACCAATTTT--TGTA
* * * * * * * * ** ** *
1178124 AAATCAAAGTTAATCCCTTAAGTAAGACAAGCATCAATTCTCA--AAACAGTCTCCATT-ATTTT
119 AAGTCTAAGTTCATGCCTCAAATGAGACAAACATGGATTCT-AGTAATGA-TCTTCATTCA-TTT
* * * * * ** ** * * * ** ***
1178186 TACGATTGAGAACCTA-AAACAAATTC-CCTTCATTTTGATACTTAACATTGATGCTTTGGTACA
181 TATGATTAAGCA-CTATAAACACATTCTCC-TCAATAGGATAAATGATATTGATGATTTTCTTTT
* * * * * * ** ** * *
1178249 GCAAGAAAAGCTTTT-TTTTCCACCACTTT--TGAGAGAATCAAAGTTTGTTTAC-AAAATAACA
244 GCATGGAAATCTTTTCTTTGCC-CTACTTTCCTTA-A-AATCAAAG-TTCATCCCTTAAATAAGA
* ** * * * * ** * * ** * *
1178310 CAAACA-TGAATAGTCAT-ACTAATCACTATTCTTTTTGGGACTAGGCGCC-ATAAACATAGT-C
305 CAAGCATTG-ATTCTCATAAC-AGTCTCCATTATTTTCAGGATTGGGAACCTA-AAACACATTCC
* ** * * * * * * * * *
1178371 TTCTCATTAGGATATGTGATATTGACGTTTTTGTTTTGCAAGAAAGGC-ATT-TTTCTCACCAAT
367 CT-TCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-CACC-GT
* ** *
1178434 TTTTG-T-GAGGTCTTAGTTCATGCCTC--AAACAAGACAAACATTG-AT--
429 TTTTGATAGA-ATCAAAGTT--TGCCTCTTAAATAAGACAAACA-TGAATAG
* *** * * * *
1178479 TCTAGTAATAATTTTCTTTCATTTT-ATGATTAGGCACTATAAACA-AATTTTCCTCA-ATAGGA
1 TC-A-TACTAATCCCCATTC-TTTTCAGGATTAGGCACTATAAACATAGTCTT-CTCATA-AGGA
** *
1178541 TTA-AT-ATTATTGATGATTTACTTTCCTAAATTCAAAGTTCATCCTTTAAATAAGACAAGCATC
61 -TACATGA-TATTGATG---TA--TTGGT---TTC---G--CA------AGA-AAG----GC-T-
** * * * * ** *
1178604 AATTCTT-AAAACAGTCTCAACTATTGTAAAATCTAAGTTCGTTTCTCAAATGAGACAAACATAG
98 --TTCTTCCCACCAAT-T----T-TTGTAAAGTCTAAGTTCATGCCTCAAATGAGACAAACATGG
* * * * * * *
1178668 ATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTTATGAACTCATTCTTCTCATTAGGA
155 ATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC-TATAAACACATTCTCCTCAATAGGA
* * * * * *
1178733 TATATGGTTTTGATGATTTTCTTTTACTTGAAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCA
219 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTACTTTCCTTAAAATCA
* * * * * * * * * * * *
1178798 AAGTTTATCTCGTAAATAAAATAAGAATCGATTCTCGTAATAATCTCCATTCTTTCCCA-GATTG
284 AAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTATTT-TCAGGATTG
* * * **
1178862 GGAACCAAAAACGCATTCCCTTTATTAGGATACATGACATTGATGAGTTGGTGTCGCAAGAAAAG
348 GGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAG
* * ** * * * * * * *
1178927 CATTCCACTCCATCGTTTCTAATAAAATCACAGTTTGCCTCTTAAATAGGACAAACACGAATAG
413 CTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTTAAATAAGACAAACATGAATAG
* * * * * * * *
1178991 TC-TGACTAAT-CCCATTTATTTTAAGGATTAGGTACCATAAACGTAGTCTTCTTAAAATTG-TA
1 TCAT-ACTAATCCCCA-TTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAA-GGATA
* * * * * *
1179053 CATGAAATTGGTGTTTTGGTTTCGCAAGAAAAGCTTTTTTCCCACCAATTTTTGTGAAGTCTAAG
63 CATGATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * * * * * *
1179118 TTCGTGCCAC-AACGAAACAAACAAGGATTCTAGTAATGATCGTCATTCATTTTGTGACTAAGCA
128 TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCA
* * * * * * * * *
1179182 CTGTAAGCACATTCTCCTTATTAGGATAAATGATACTAATAATTTTATTTTGCATAGAAATC-TT
193 CTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * *
1179246 TCTTTGCCCTATTTTTCTTAAAATCAAAGTTTATCCCATAAATAAGATAAGCATCGATTCTCATA
258 TCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATA
* * * * * * * ** * *
1179311 ACAGTCTACATTCTTTACAAGATTAGGAACCAAAAACTCATTCCCCGCATCAGGAGACATGACAT
323 ACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT
* ** * * * * *
1179376 TGATGCTTTGGTGTCACGTGAAAAGCTTTTCATTCCACCGTTTGTGACAAAATCAAAGTTTGCAT
388 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCT
**
1179441 CTTAAATTGGACAAACATGAATAG
453 CTTAAATAAGACAAACATGAATAG
* * ** * * * * *
1179465 TGATACCAATCCCCATTCTTTTTGGGATTAGGTA-TCGTAAACA-AGTATTCTCATAAGAACACA
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACT-ATAAACATAGTCTTCTCATAAGGATACA
* * * ** *
1179528 TGGTATTGATGCATTGGTTTCCCAAGAAAGGCTTTCTTCCCATTAATTTTTGTAAAGTCTAATTT
65 TGATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * ** * * *
1179593 TATGCCTCAAACGAGACAAACATTGACTCTAGTGGTGATTTTCTTTCATTTTATGATTAGGCACT
130 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACT
* * * * *
1179658 ATAAACAAATTCTCCTCAATACGATTAAT-ATTATCGATGATTTTCTTTTGCATGGAAAGCTTTT
195 ATAAACACATTCTCCTCAATAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTTT
* * * *
1179722 CATTGCCCTACTTTCCTTAAAATCAAAGTTAATCCCTTAAATAAGACAAGCATCGATTCTCAAAA
259 CTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAA
* * * *
1179787 CAGTCTCCATTATTTTTACGATTGAGAACCTAAAACACATTCCCTTCCTTAGGATACATGACATT
324 CAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATT
* * * * * * * **
1179852 GACGCTTTGGTATAGTAAGAAAAGCTTTTTTTTCCACCGTTTTTGAGACG-ATCAAAATTTGTTT
389 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA-GAATCAAAGTTTGCCT
1179916 AC-TAAATAAGACAAACATGAATAG
453 -CTTAAATAAGACAAACATGAATAG
* * * * * ** * **
1179940 TCATACTAATCACTATTCCTTTCGGGACTAGGTGGC-ATAAACATAGTCTTCTCATTAGGATATG
1 TCATACTAATCCCCATTCTTTTCAGGATTAGG-CACTATAAACATAGTCTTCTCATAAGGATACA
* * * * * *
1180004 TGATATTGATGTTTTGGTTTCGCAAGAAATGCATTT-TTCCCACCAACTTTTGTGAGGTCTAAAT
65 TGATATTGATGTATTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAGT
* * * * * *
1180068 TAATGCCTCAAACGAGACAAACATTGATTCTAGTAATGATTTTCTTTCATTTTATGATTAGGCAC
129 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * * * *
1180133 TATAAACAAATTCTCCTCAATAGGATTAAT-ATTTTCTATGATTTTCTTTTGCATGGAAAGCTTT
194 TATAAACACATTCTCCTCAATAGGATAAATGATATT-GATGATTTTCTTTTGCATGGAAATCTTT
* * *
1180197 T-TATT-CCCTTACTTTCCTTAAAATCAAAGTTCATCCCATAAATAAGGCAAGCATTGATTCTTA
258 TCT-TTGCCC-TACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCA
* * * * * *
1180260 AAATAGTCTCTATTATTTTCAGGATTAGGAACCTAAAACACATTTCCTTCATTAGGATACACGAC
321 TAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC
* * *
1180325 ATTGATGCTTCGGTGTC-CTAAGAAAAGCTTTTTTTTTCCATCGTTTTTGAT-GAAATCAAAGTT
386 ATTGATGCTTTGGTGTCGC-AAGAAAAGC-TTTTCTTTCCACCGTTTTTGATAG-AATCAAAGTT
*
1180388 TGCCTCCTAAATAAGACAAACATGAATAG
448 TGCCTCTTAAATAAGACAAACATGAATAG
* * * * * * * *
1180417 TCATAGTAATCACCATTTTTTTCGGGACTATGCACCATAAACATAGTCTTCTCATTAGGATACAT
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
* * * * * **
1180482 GATATTGATGTTTTGGTTTTGCAAGGAAGGCATTT-TTCCCATCAGTTAATGTGAAA-TCTAAGT
66 GATATTGATGTATTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGT-AAAGTCTAAGT
* ** * * *
1180545 TCATGCGTCAAACAAGACAAACATGGATTCTAGTAATGATATTCTTTCATTTTATGATTAGGCAC
129 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * * * *
1180610 TATAAACATATTCTCCTTAATAGGATAACT-ATTATTGATCATTTTCTTTTGCATGAAAATCTTT
194 TATAAACACATTCTCCTCAATAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * ** * *
1180674 TCTTTGCCCTATTTTCTTTAAAGTCAAAGTTCATCCCATAAATAATACAAGCATCAATCCTCGTA
258 TCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATA
* * * * * * * ** *
1180739 ATAGTCTCCATTATTTTCAAGATTTGGAACCTAAAACACATTCACTTCACTAAGACATGTGGCAT
323 ACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACAT
* * * **
1180804 TGATGCTTTCGTGTCGCAAGAAAGGCTTTTCATTCCACCG-TTTT--TAGAATCAAAGTTTGTTT
388 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCT
1180866 CTTAAATAAGACAAACATG---A-
453 CTTAAATAAGACAAACATGAATAG
** ** * * * * * *
1180886 --ATACTAATGACCATT-TGTTTTTGGATTAGGCATTGTAAACATACTATTGTCACAAGGATACA
1 TCATACTAATCCCCATTCT-TTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACA
* * * * *
1180948 TGATATTAATGCATTGGTTTCCCAAGAATGGCTTTCTTCCCACCAACTTTTGTAAAGTCTAAGTT
65 TGATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* * * * * *
1181013 CGTGCCTCAAATGAGATAAACATGGATTCTAGTAACGATCTTCATTCATTATGTGGTTAAGCACT
130 CATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACT
* * * * *
1181078 ATAAACACATTCTCCTTAGTAGGACAAATGATATGGATGATTTTCTTTTGCATGGAAATATTTTC
195 ATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC
* ** * * * *
1181143 TTTGCCCTATTTTCCTTAAAGCCAAAGTTCATCCCTTAAATAATACAAGCATCGATTCTCAAAAT
260 TTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAAC
* * * * * *
1181208 AGTCTCCAATATTTTCAAGATTAGGAGCCCAAAACACATTCCCTTCATTAGGATACCTGACATTG
325 AGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTG
* *
1181273 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCCTTT-CTCCGTTTTTGATAGAATCAAAGTTTGTCTC
390 ATGCTTTGGTGTCGCAAGAAAAGCTTTT-CTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTC
* *
1181337 GTAAAGAAGA-AAACATGAATAG
454 TTAAATAAGACAAACATGAATAG
* * * * * * **
1181359 TCATACTAGTCACCATTCTTTTCAGGACTAGGCCCTATAAACATAGT-ATCTCATTAGGATATGT
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
* * * * * *
1181423 GATATTAATGTTTTGGTTTTGCAAGAAAAGCATTT-TTCCCACCGATTTTTGTGATA-TCTAAGT
66 GATATTGATGTATTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGT-AAAGTCTAAGT
* * * * *
1181486 TCATGCCTCAAACGAAATAAACATGGATTCTAGTAATGATCTTCTTTCATTTTATG-CTAAGCAC
129 TCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCAC
* * * * *
1181550 TATAAACAAATTCTCCTCAATAGGATAAAT-ATTATTGAAGATTTTCTTTCGCACGAAAATCTTT
194 TATAAACACATTCTCCTCAATAGGATAAATGA-TATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * * *
1181614 T-TCTCGCCCTATTTTCCTTAAAGTTAAAGTTCATCCCTTAAATAAGACAAGCATTGATCCTCGT
258 TCT-TTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCAT
*** *
1181678 AACAGTCTCCATT-TTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGACGTATGGCA
322 AACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * *
1181742 TTGATGCTTTGGTGTTGCAGGAGAAGCTTTTCTTTCCACCATTTTTTATAGAATCAAAGTTTGTC
387 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCC
* *
1181807 TCTTAAATAGGACAAACATGAATAC
452 TCTTAAATAAGACAAACATGAATAG
* * * * *
1181832 TCATATTAATCCTCATTCTTTTCAAGATTAGGCACTATAAACATAGTCTTCTCTTTAGTGTATAC
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAG-G-ATAC
* * * * *
1181897 A--ATATTGATGTTTTGGTTTCGTAAGAATGGCATTT-TTCCTACCAATTTTTGTTAAGTCTAAG
64 ATGATATTGATGTATTGGTTTCGCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAGTCTAAG
* * * *
1181959 TTCATGCCTCAAATGAGACAAACATAGATTCTAGTAACGATCTTCATTCATTTTGTGATTAAGTA
128 TTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCA
* * * * *
1182024 CTATAAACACATTCTCCCCAGTCGAATAAATGATATTGTTGATTTTCTTTTGCATGGAAATCTTT
193 CTATAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTT
* * * * *
1182089 TCTTTGCCCTATTTTCCATAAAACCAAAGTTTATCCCTTAAATAAGACAAGC-TTAGATTCTCAA
258 TCTTTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATT-GATTCTCAT
* * * *
1182153 AACAGTCTCCAATATTTTCAAGATTGGGAAACTAAAACACATTTCCTTCATTAGGATACATGACA
322 AACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACA
* * * * * *
1182218 TTGAGGCTTAGGTGTCACAAGAAAAGCTTTTCTTTCCACCGTTTATGCTAGAATCAAAGTTTGTC
387 TTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCC
*
1182283 TCTTAAATAA-AGTAAACATGAATAG
452 TCTTAAATAAGA-CAAACATGAATAG
* * * * *
1182308 TCAAACTAATCCCCATTCTTTTTAGGATTAGGCACCATAAACATAGTCTTCCCATAAGGATACAC
1 TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
** * * * * *
1182373 GATATTGATGCT-TTGGTTTCATATGAAAGGGTTTCTTCCCACCAATTGTTGTAAAATTTAAGTT
66 GATATTGATG-TATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTT
* *
1182437 CGTTCCTCAAAT
130 CATGCCTCAAAT
1182449 AAGGATACAC
Statistics
Matches: 5054, Mismatches: 1057, Indels: 507
0.76 0.16 0.08
Matches are distributed among these distances:
466 7 0.00
467 341 0.07
468 8 0.00
469 7 0.00
470 27 0.01
471 4 0.00
472 108 0.02
473 284 0.06
474 536 0.11
475 660 0.13
476 1910 0.38
477 450 0.09
478 15 0.00
479 5 0.00
480 1 0.00
481 6 0.00
482 10 0.00
483 7 0.00
484 3 0.00
485 4 0.00
486 4 0.00
487 4 0.00
488 3 0.00
489 4 0.00
490 3 0.00
491 8 0.00
492 16 0.00
493 68 0.01
494 218 0.04
495 15 0.00
496 3 0.00
497 2 0.00
499 1 0.00
500 2 0.00
502 3 0.00
503 7 0.00
504 1 0.00
505 3 0.00
507 4 0.00
508 62 0.01
509 144 0.03
510 72 0.01
511 12 0.00
512 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (476 bp):
TCATACTAATCCCCATTCTTTTCAGGATTAGGCACTATAAACATAGTCTTCTCATAAGGATACAT
GATATTGATGTATTGGTTTCGCAAGAAAGGCTTTCTTCCCACCAATTTTTGTAAAGTCTAAGTTC
ATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTA
TAAACACATTCTCCTCAATAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCT
TTGCCCTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGACAAGCATTGATTCTCATAACA
GTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATTGA
TGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGCCTCTT
AAATAAGACAAACATGAATAG
Found at i:1182511 original size:86 final size:86
Alignment explanation
Indices: 1182361--1182532 Score: 281
Period size: 86 Copynumber: 2.0 Consensus size: 86
1182351 TAGTCTTCCC
* * *
1182361 ATAAGGATACACGATATTGATGCTTTGGTTTCATATGAAAGGGTTTCTTCCCACCAATTGTTGTA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTGTTGTA
1182426 AAATTTAAGTTCGTTCCTCAA
66 AAATTTAAGTTCGTTCCTCAA
* *
1182447 ATAAGGATACACGATATTGATGCTTTGGTTTCCCAAGAAAGGCTTTCTTCCCACCAATTTTTGTA
1 ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTGTTGTA
**
1182512 AGGTTTAAGTTCGTTCCTCAA
66 AAATTTAAGTTCGTTCCTCAA
1182533 TGAGACAAAC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (86 bp):
ATAAGGATACACGATATTGATGCTTTGGTTTCACAAGAAAGGCTTTCTTCCCACCAATTGTTGTA
AAATTTAAGTTCGTTCCTCAA
Found at i:1184877 original size:475 final size:472
Alignment explanation
Indices: 1182452--1185969 Score: 3683
Period size: 475 Copynumber: 7.4 Consensus size: 472
1182442 CTCAAATAAG
* * *
1182452 GATACACGATATTGATGCTTTGGTTTCCCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAGGT
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAGT
* * * *
1182516 TTAAGTTCGTTCCTC-AATGAGACAAACATGGATTCTAGTAATGATTTTTATTCATTTTGTGATT
65 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* *** * *
1182580 AAGTACTATAAACACATTCTCCTCCCCATGATAAATGATATTGATGATTTTCTTTTGCCTGGAAA
130 AAGCACTATAAACACATTCTCCTCAATAAGATAAATG-TATTGATGATTTTCTTTTGCATGGAAA
* * * *
1182645 TCTTTTCTTTGCCCATTTTCCTTAAAATTAAAGTTCATCCCTTAAAAAAGACAAGCATCAATTCT
194 TCTTTTCTTTGCCTATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCAATTCT
* * * ** *
1182710 CAAAATAGTCTCCATTATTTTCGGGATTGGGAAATTAAAACACATTCCCTTCACTAGGATACATG
259 CATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATG
* * ** * * * * * *
1182775 ACATTGACGCTTTGGTGTCGCAGGAAAAGCTTTTCACTCCATCGTTTCTAATAAAATCAAAGATT
324 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * ** *
1182840 GCCT-TGTAAATAGGACAAACATGAATAGTC-T-CCTAATCCCCATTCTTTTTGGGTTTAGGCAC
389 GTCTCT-TAAATAAGACAAACATGAATAGTCATACC-AATCCCCATTC-TTTTAAGATTAGGCAC
** * * * **
1182902 TGTAGACATAGTATTCTCAAAA
451 CATAAACATAGTCTTCCCTTAA
* *
1182924 GGATACACGATATTGATGCTTTGGTTTCCCAAGAAAGGC-TTTCTTCCCACCAATTTTTGTAAAG
1 -GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTT-TTCCCACCAATTTTTGTAAAG
* * * *
1182988 TCTAAGTCCGTGCCTCAAATGAGAGAAACATGGATTCTAGTAACGAT-TTGCTTTCATTTTGTGA
64 TCTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTT-CATTCATTTTGTGA
* * * **
1183052 TTAAGCACTATAAACAAATTCTCC-CACCTAGGATAAATGATATTGATGA-TTTCTTTTGCACAG
128 TTAAGCACTATAAACACATTCTCCTCA-ATAAGATAAATG-TATTGATGATTTTCTTTTGCATGG
* * * * *
1183115 AAATCTTGTT-TTGGGCTATTTT-CTTCAAAATCAAAGTTTAACCCTTAAATAAGACAAGCATCA
191 AAATCTT-TTCTTTGCCTATTTTCCTT-AAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCA
* * ** * *
1183178 ATTCTCAAAACAGTCTCTATTATTTTTTGGATTGGTAACCTAAAACATATTCCCTTCATTAGGAT
254 ATTCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGAT
* * * * * *
1183243 ATATGACATTGATGCTTTAGTGTCACAAAAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAA
319 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * * * * * * *
1183308 AGTTTGTTTCTTAAATAAGACAAACATGAATGGTCATGCTAAGCACCATTCTTTTCGAGACTAGG
384 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTT-AAGATTAGG
* *
1183373 CACCATAAACATAGTCTTCTCATTAG
448 CACCATAAACATAGTCTTC-CCTTAA
*** * * *
1183399 GATAGGTGATATTGATGTTTTGGTTTCGCAAGAAAGGCA-TTTTCCCACCAATTTTTGTGAGGTC
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
** * * * *
1183463 TAAGTTCACGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCATCTTTCATTTTATGCTTA
66 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* ** * *
1183528 AGCACTATAAACAAATTCTCCTTGATAGGATAAATGTTATTGATGATTTTCTTTTGCATGAAAAT
131 AGCACTATAAACACATTCTCCTCAATAAGATAAATG-TATTGATGATTTTCTTTTGCATGGAAAT
* * * *
1183593 CTTTTTTTTTTGCCCTATTTTCCTTAAAGTCAAAGTTCATCCCAT-AAATAAGAGAAGCATCGA-
195 C--TTTTCTTTG-CCTATTTTCCTTAAAATCAAAGTTCATCCC-TCAAATAAGACAAGCATCAAT
** * * * *
1183656 TCTTTGTAACAGTCTCCATTTTTTTCAGGATTAGGGAA-CTAAAATAGATTCCCTTCATTAAGAT
256 TC-TCATAACAGTCTCCATTATTTTCAGGATT-GGGAACCTAAAACACATTCCCTTCATTAGGAT
* * * *
1183720 ACATGACATTGATGATTTGATGTCGCAAGAAAAGCTTTTATATT-CACCATTTTTTATAGAATCA
319 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT-TTCCACCATTTTTGATAGAATCA
* * * * *
1183784 AAGTTTGTCTCTTAAGTAAGATAAACATGAATACTCATACTAATCCCCATTATTTTCAAGATTAG
383 AAGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTT-AAGATTAG
* *
1183849 GCACCATAAACAATAAACTTAGTCTTCTCATAA
447 GCACCATAAAC-----A--TAGTCTTCCCTTAA
* * ** * * * * *
1183882 GGATACACGATAATGGTACTTTGGTTTCACTAGAAAGGCTTTTTTCTCGCCAATTTTGGTAAAGT
1 -GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT
* * * *
1183947 CTAAGTTCGTGCCTCAAATGAGACGAACATGGATTCTGGTAATGATCTTCTTTCATTTT-AGATT
65 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* * * * **
1184011 AGGCACAATAAACACATTCTCCTCAAT-AGAATAAATATTATTGATGATATTCTTTTGCATAAAA
130 AAGCACTATAAACACATTCTCCTCAATAAG-ATAAAT-GTATTGATGATTTTCTTTTGCATGGAA
* *
1184075 ATCTTTTCTTTGCCTAATTTTCCTTAAAGTCAAAGTTCATCCCAT-AAAAAAGACAAGCATCAAT
193 ATCTTTTCTTTGCCT-ATTTTCCTTAAAATCAAAGTTCATCCC-TCAAATAAGACAAGCATCAAT
** * * * *** *
1184139 TCTTGTAACTGTCTCTATTATTTTTAGGATTAAAAACCTAAAACAAATTCCCTTCATTAGGATAC
256 TCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATAC
* * * *
1184204 ATGACATTGTTGCTTAGGTGTCGTAAGAAAAGCTTTTCTTTCTACCAGTTTTTGATAGAATCAAA
321 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAA
** * * *
1184269 GTTCATCTCTTAAATAAGACAAACATGAATACTCATGCCAATCCCCATTCTTTCCAAGATTAGGC
385 GTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTT-TAAGATTAGGC
* *
1184334 ATCATAAACATAGTATTCCCTTAA
449 ACCATAAACATAGTCTTCCCTTAA
* *
1184358 TGATACACAATATTGATGTTTTGGTTTCACAAGAAAAGCATTTTTCCCACCAATTTTTGTAAAGT
1 -GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGT
* * *
1184423 CTAAGTTTGTGCCTCAAATGAGACAAACATTGATTCTAGTAATGATCTTCATTCATTTTGGGATT
65 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATT
* * * *
1184488 AGGCA-TAATAAATACATTCTCCTCATTAAGATAAATAGTACT-ATTGATTTTCTTTTGCATGGA
130 AAGCACT-ATAAACACATTCTCCTCAATAAGATAAAT-GTATTGA-TGATTTTCTTTTGCATGGA
* * * **
1184551 AATC-TTTCCTTGCTCTTATTTTCCTTAAAATCAAAGTT-TTCTCTCAAATAAGACAAGCATTGA
192 AATCTTTTCTTTGC-C-TATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCAA
* * * * * * *
1184614 TTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGATCC-ACAAGCACAATCCCTTTAGTAGGAT
255 TTCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACCTA-AAACACATTCCCTTCATTAGGAT
* * *
1184678 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTCTCTTTCCACCATTTTTGATAAAATCAA
319 ACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAA
* * *
1184743 AGTTTGCCTCTTAAATAAGACAAACATGAATAGTTATACCAATCCCCATTCTTTTTAGTATTAGG
384 AGTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTTAAG-ATTAGG
* *
1184808 GACCATAAACATAGTGTTCACCTTAA
448 CACCATAAACATAGTCTTC-CCTTAA
** * * * * **
1184834 GATATTCGATATTGATGTTTTGGTTTCATAAGAAAGACATTTTTTCAATGAATTTTTGTAAAGTC
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
* *
1184899 TAAGTTCTTGCCTCAAATGAGACAAACATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTA
66 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* * * * *
1184964 AGCACTATAAACACATTCTCTTTAGTAGGATAAATGATATTGATGATTTTCTTTTGCAAGGAAAT
131 AGCACTATAAACACATTCTCCTCAATAAGATAAATG-TATTGATGATTTTCTTTTGCATGGAAAT
* * *
1185029 CTTTTCTTTGCTCTACTTTCCTTAAAATCAAAATTCATCCTTCAAATAAGACAAGCATCAATTCT
195 CTTTTCTTTGC-CTATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCAATTCT
* * * * * *
1185094 TAAAACAATCTCCATTATTTTCTGGATTAGGAACCTAAAACACATTCCCATCATTAGGATACATG
259 CATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATG
* * * * * * *
1185159 ACATTGATGGTTTAGTGTCGCAAGAAAAGCTTTTATTTGCATCATTTTTAAAAGAATCAAAGTTT
324 ACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTT
* * * ** * *
1185224 GTCTCTTAAATAAGACAAACATGAATAGTCATACAAATCACCGTTCTTTTCGGGACTAGGCAGCA
389 GTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTT-AAGATTAGGCACCA
* *
1185289 TAAACATAGTCTTCTCATTAG
453 TAAACATAGTCTTC-CCTTAA
** * * ** * *
1185310 GATACGTGATATTGATGTTTTGGTTTCGCAAGGAAGGCATTTTTCCTGCCAACTATTGTGAAA-T
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGT-AAAGT
* * * * * ** *
1185374 CTAAGTTCATGCCTCAAACGAGACGAACTTGGATTCTAAG-AATGATATTGTTTCATTTTATGAT
65 CTAAGTTCGTGCCTCAAATGAGACAAACATGGATTCT-AGTAATGATCTTCATTCATTTTGTGAT
* * * *
1185438 TAAGCACTATGAACATATTCTCCTCAATAAGATAAATATTATTGATGATTTT-TTTTGCATGAAA
129 TAAGCACTATAAACACATTCTCCTCAATAAGATAAAT-GTATTGATGATTTTCTTTTGCATGGAA
* ** * * * **
1185502 ATCTTTTCTTTACCCTATTTTTTTTAAAGTCAAAGTTAATCCCAT-AAGTAAGACAAGCATTGAT
193 ATCTTTTCTTT-GCCTATTTTCCTTAAAATCAAAGTTCATCCC-TCAAATAAGACAAGCATCAAT
* * * * * * *
1185566 CCTCGTAATAGTCTCCATTATTTTCAGGATTGGGAGCCTAAAACACATTCCCTTCGTAAAGATAC
256 TCTCATAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATAC
* *
1185631 AAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATCATTTTTTG-TAGAATCAAA
321 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAGAATCAAA
* * * *
1185695 GTTCGTCTCTTAAATAAGACAAACATGAATACTCATACCAATCCCCATTCTTTCCAGGATTAGGC
385 GTTTGTCTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTT-TAAGATTAGGC
* *
1185760 ACTATAAACATAGTCTTCTCTTTAA
449 ACCATAAACATAGTCTTC-CCTTAA
*** * ** * * *
1185785 GATACGTAAAATTGATGTTTTGGTTTTGCAAGAAAGGCATTTTTCTCACGAATTTTTGTAATGTC
1 GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
* * * *
1185850 TAAGTTCATACCTCAAATGAGACAAAAATGGATTCTAGTAACGATCTTCATTCATTTTGTGATTA
66 TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
* ** *
1185915 AGCACTATAAACACATTCTCCTCAGTTGGATAAATGATATTGATGATTTTTTTTT
131 AGCACTATAAACACATTCTCCTCAATAAGATAAATG-TATTGATGATTTTCTTTT
1185970 ATTAGCTCAA
Statistics
Matches: 2548, Mismatches: 429, Indels: 133
0.82 0.14 0.04
Matches are distributed among these distances:
472 3 0.00
473 396 0.16
474 175 0.07
475 663 0.26
476 611 0.24
477 286 0.11
478 14 0.01
481 7 0.00
482 140 0.05
483 85 0.03
484 95 0.04
485 73 0.03
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (472 bp):
GATACACGATATTGATGTTTTGGTTTCACAAGAAAGGCATTTTTCCCACCAATTTTTGTAAAGTC
TAAGTTCGTGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTGTGATTA
AGCACTATAAACACATTCTCCTCAATAAGATAAATGTATTGATGATTTTCTTTTGCATGGAAATC
TTTTCTTTGCCTATTTTCCTTAAAATCAAAGTTCATCCCTCAAATAAGACAAGCATCAATTCTCA
TAACAGTCTCCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGAC
ATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT
CTCTTAAATAAGACAAACATGAATAGTCATACCAATCCCCATTCTTTTAAGATTAGGCACCATAA
ACATAGTCTTCCCTTAA
Found at i:1186936 original size:50 final size:50
Alignment explanation
Indices: 1186802--1186936 Score: 175
Period size: 50 Copynumber: 2.7 Consensus size: 50
1186792 ATTTCACAAT
* * *
1186802 TGTATTAATACATTCT-TCATTGTATCGATACATTATGGGTTTAACCCAGA
1 TGTATTGATACATT-TATCAATGTATCGATACATTCTGGGTTTAACCCAGA
* * * *
1186852 TGTATCGATACA-TTATTCACTATATCGATACATTCTGGGTTTTACCCAGA
1 TGTATTGATACATTTA-TCAATGTATCGATACATTCTGGGTTTAACCCAGA
1186902 TGTATTGATACATTTATCAATGTATCGATACATTC
1 TGTATTGATACATTTATCAATGTATCGATACATTC
1186937 AAGCATTTTC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 68 0.93
51 3 0.04
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.40
Consensus pattern (50 bp):
TGTATTGATACATTTATCAATGTATCGATACATTCTGGGTTTAACCCAGA
Found at i:1189303 original size:27 final size:28
Alignment explanation
Indices: 1189251--1189303 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
1189241 TTTCTTCATA
1189251 AAACATCGATTTTTCATAATCAGGGGTT
1 AAACATCGATTTTTCATAATCAGGGGTT
1189279 AAACACTC-ATTTTTCATAATC-GGGG
1 AAACA-TCGATTTTTCATAATCAGGGG
1189304 ATACTCCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
27 4 0.17
28 18 0.75
29 2 0.08
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (28 bp):
AAACATCGATTTTTCATAATCAGGGGTT
Found at i:1189523 original size:79 final size:79
Alignment explanation
Indices: 1189300--1189546 Score: 271
Period size: 79 Copynumber: 3.1 Consensus size: 79
1189290 TTTCATAATC
* * * *
1189300 GGGGATACTCCAACCCTGATTTTATTTCTAAAATATCAATTTTTCACAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCTTGGTTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAAC
* *
1189365 CCTATTATTTCAAA
66 CCTATTATTTTAGA
* * * * ** *
1189379 AGGGATACTCTAACCTCGGTTTTATTTCTAAAACACCGATTTTTCACAATCAAGGACACTCCAAC
1 GGGGATACTCCAACCTTGGTTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAAC
*
1189444 CCTATTATTTTTGA
66 CCTATTATTTTAGA
* * ** *
1189458 GGGGATACTCCAACCTTGGTTTTATTTCCAAGACATCGA-TTTTCTATTATCGGGGATACTTCAA
1 GGGGATACTCCAACCTTGGTTTTATTTCTAAAACATCGATTTTTC-ACAATCGGGGATACTCCAA
* * *
1189522 CCTTGTTATTTTCGA
65 CCCTATTATTTTAGA
*
1189537 GGCGATACTC
1 GGGGATACTC
1189547 TAATCCTATT
Statistics
Matches: 137, Mismatches: 30, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
78 5 0.04
79 132 0.96
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.35
Consensus pattern (79 bp):
GGGGATACTCCAACCTTGGTTTTATTTCTAAAACATCGATTTTTCACAATCGGGGATACTCCAAC
CCTATTATTTTAGA
Found at i:1195852 original size:62 final size:62
Alignment explanation
Indices: 1195746--1196322 Score: 617
Period size: 62 Copynumber: 9.4 Consensus size: 62
1195736 CCCCTTTTAG
* * *
1195746 CCCTCTTAGTCCTCAAAGAGC-GAGACACCTTTTCCTTTTTAAAGCCCACACGAGTTGGTAGCA
1 CCCT-TTAGTCCTCAAAGAGCAG-GACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* * ** * *
1195809 -TCTTTGAGTCCTCAAAGAGTAGGACGTTTTTTTCTTTTCAAAGCCCACAAGAGTTGCTAGCA
1 CCCTTT-AGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* * * *
1195871 CCCTTTTA-TCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACATGAATTGGTGGCA
1 CCC-TTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* *
1195933 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAGAGCCCACACGAGTTGGTGGCA
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* * *
1195995 CCCTTTTGTCCTCAAAGAGCAAGG-TGCC----T-TTTTCAAAGCCCACACGAGTTAG-AGGCA
1 CCCTTTAGTCCTCAAAGAGC-AGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTA-GCA
* * * * *
1196052 -CCTTTAGTCCTTAAAGAGCAAGACACATTTTTCTTTTC-AAGCCCACATGAGTTGGT-G-A
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* * *
1196110 CACCTTTAGTCCTCAAAGAGCAAGATGCCTTTTTTCTTTTCAAAGCCCACACGAGTTGGTAACA
1 C-CCTTTAGTCCTCAAAGAGCAGGACGCC-TTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
* * *
1196174 CCCTTTAGTCCTCAAAGAGCAGGATGCCTTTTTCTTTTCAAAGCCCACACGAATTGGTGGCA
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
** * * * ** *
1196236 CCCTTTAGTTTTCAAAGAGCTGGACGCATTTTTCCTTTT-AAAGTCCACGTGAGTTGGTGGCA
1 CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTT-CTTTTCAAAGCCCACACGAGTTGGTAGCA
* *
1196298 CCTTTTAGTCCTCAAGGAGCAGGAC
1 CCCTTTAGTCCTCAAAGAGCAGGAC
1196323 ACACTTTCCT
Statistics
Matches: 434, Mismatches: 59, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
55 2 0.00
56 18 0.04
57 24 0.06
58 2 0.00
59 1 0.00
60 39 0.09
61 22 0.05
62 284 0.65
63 37 0.09
64 5 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (62 bp):
CCCTTTAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTCAAAGCCCACACGAGTTGGTAGCA
Found at i:1196448 original size:42 final size:42
Alignment explanation
Indices: 1196305--1197073 Score: 533
Period size: 42 Copynumber: 18.1 Consensus size: 42
1196295 GCACCTTTTA
* *
1196305 GTCCTCAAGGAGCAGGACACACTTTCCTCATTTCCTTTT-TGCCTTT
1 GTCCTCAAAGAGCAGGACGCAC--T--TCATTTCCTTTTCT-CCTTT
* * *
1196351 GTCCTCAAAGAGCGGGATGCACTTCATTTCCTTCTTTTTCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-T-TTTCTCC-TTT
* * * *
1196396 GTCCTCAAAGAGTAGGGCGCATTTTATTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* * *
1196438 GTCCTTAAAGAGCAGG--GCACATATCATTTTCTTTTCTTCTTT
1 GTCCTCAAAGAGCAGGACGCAC-T-TCATTTCCTTTTCTCCTTT
* ** * * * *
1196480 GTCCTCAAAGAGTAGGGTGCATTTCATTTCCTTTTTTTCCCCTC
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-TTTTCT-CCTTT
* * *
1196524 GTCCTCAAAGAGCAGGACACACTTTATTTCCTTCTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* * * * * * *
1196566 ATCCTCAAAGAGTAAGAAGCACCTCATTTTCTTATTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTT-TTCTCCTTT
* * * *
1196609 GTTCTCAAAGAGTA--A-G-A-TGCCTTT--TTTT-TCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* * * *
1196643 GTCCTCAAAGTGCAGGACACATTTCATTTCCTTTTTTTCCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-TTTTCT-CCTTT
* * ** * *
1196687 ATCCTCAAAGAGTAGGATACACTTTATTTCTTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* **
1196729 GTCCTCAAAGAGCATGACAAACTTCATTTCCTTCTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTT-TTCTCCTTT
* * ** *
1196772 GTCCTCAAAAAGCATGACAAACTTCATTTCCTTTTTCCCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCC-TTTTCTCCTTT
* * * * * **
1196815 GTCCTCAAAGAGCGGGATGTATTTCATTTCCTTTTTTTGTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* *
1196857 GTCCTCTAAGAGCAGGACGCGCTT--TTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* ** * *
1196897 GTCCTCAAAGAGTAGGGTGCATTTCATTTCCTTCTTTTCCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTT-TTCT-CCTTT
* * * *
1196941 GTCTTCAAAGAACAGGACACA-TTTATTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
* * * *
1196982 GTCCTCAAAGAGCAAGACACA-TTCCATTTCCTTCCTTTCCCCATT
1 GTCCTCAAAGAGCAGGACGCACTT-CATTTCC-T--TTTCTCCTTT
* * * *
1197027 GTCCTCAAATAGCAGGACACACTTCATTTCTTTTTTTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
1197069 GTCCT
1 GTCCT
1197074 TGAGGAGTAG
Statistics
Matches: 571, Mismatches: 120, Indels: 68
0.75 0.16 0.09
Matches are distributed among these distances:
34 17 0.03
35 2 0.00
36 3 0.01
38 5 0.01
39 6 0.01
40 35 0.06
41 27 0.05
42 178 0.31
43 127 0.22
44 89 0.16
45 62 0.11
46 20 0.04
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.41
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGACGCACTTCATTTCCTTTTCTCCTTT
Found at i:1196593 original size:86 final size:86
Alignment explanation
Indices: 1196332--1197073 Score: 603
Period size: 86 Copynumber: 8.8 Consensus size: 86
1196322 CACACTTTCC
* * ** * *
1196332 TCATTTCC-T-TTTTGCCTTTGTCCTCAAAGAGCGGGATGCACTTCATTTCCTTCTTTTTCCTTT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCC-T-TTTCTCC-TT
* **
1196395 TGTCCTCAAAGAGTAGGGCGCATT
63 TGTCCTCAAAGAGCAGGAAGCATT
* * * * * * *
1196419 TTATTTCCTT-TTCT-CCTTTGTCCTTAAAGAGCAGGGCACA-TATCATTTTCTTTTCTTCTTTG
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACT-TTATTTCCTTTTCTCCTTTG
* **
1196481 TCCTCAAAGAGTAGGGTGCATT
65 TCCTCAAAGAGCAGGAAGCATT
* * * * *
1196503 TCATTTCCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACACTTTATTTCCTTCTCTCCTTTAT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* * **
1196568 CCTCAAAGAGTAAGAAGCACC
66 CCTCAAAGAGCAGGAAGCATT
* * * * * **
1196589 TCATTTTCTTATTTT-CCTTTGTTCTCAAAGAGTAAGATGC-C----TTT--TTTT-TCCTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
*
1196645 CCTCAAAGTGCAGGACA-CATT
66 CCTCAAAGAGCAGGA-AGCATT
* * * * *
1196666 TCATTTCCTTTTTTTCCCTTTATCCTCAAAGAGTAGGATACACTTTATTTCTTTTTCTCCTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* * *
1196731 CCTCAAAGAGCATGACA-AACT
66 CCTCAAAGAGCAGGA-AGCATT
* * * * * *
1196752 TCATTTCCTTCTTCT-CCTTTGTCCTCAAAAAGCATGACAAACTTCATTTCCTTTTTCCCCTTTG
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCC-TTTTCTCCTTTG
* * *
1196816 TCCTCAAAGAGCGGGATGTATT
65 TCCTCAAAGAGCAGGAAGCATT
** * * *
1196838 TCATTTCCTT-TTTT-TGTTTGTCCTCTAAGAGCAGGACGCGC-TT-TTTCCTTTTCTCCTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* **
1196899 CCTCAAAGAGTAGGGTGCATT
66 CCTCAAAGAGCAGGAAGCATT
* *
1196920 TCATTTCCTTCTTTTCCCTTTGTCTTCAAAGAACAGGACACA-TTTATTTCCTTTTCTCCTTTGT
1 TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
*
1196984 CCTCAAAGAGCAAGACA-CATT
66 CCTCAAAGAGCAGGA-AGCATT
* * * * * * *
1197005 CCATTTCCTTCCTTTCCCCATTGTCCTCAAATAGCAGGACACACTTCATTTCTTTTTTTCCTTTG
1 TCATTTCCTT-CTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTG
1197070 TCCT
65 TCCT
1197074 TGAGGAGTAG
Statistics
Matches: 527, Mismatches: 104, Indels: 48
0.78 0.15 0.07
Matches are distributed among these distances:
77 34 0.06
78 25 0.05
79 1 0.00
80 3 0.01
82 39 0.07
83 12 0.02
84 57 0.11
85 123 0.23
86 171 0.32
87 58 0.11
88 4 0.01
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.42
Consensus pattern (86 bp):
TCATTTCCTTCTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
CCTCAAAGAGCAGGAAGCATT
Found at i:1196652 original size:119 final size:120
Alignment explanation
Indices: 1196509--1196740 Score: 303
Period size: 119 Copynumber: 1.9 Consensus size: 120
1196499 CATTTCATTT
1196509 CCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACACTTT-ATTTCC-TTCTCT-CCTTTATCCT
1 CCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACA-TTTCATTTCCTTTCTCTCCCTTTATCCT
*
1196571 CAAAGAGTAAGA-AGCACCTCATTTTCTTATTT-TCCTTTGTTCTCAAAGAGTAAGATG
65 CAAAGAGTAAGATA-CACCTCA-TTTCTT-TTTCTCCTTTGTCCTCAAAGAGTAAGATG
* * * * * *
1196628 CCTTTTTTTTCCTTTGTCCTCAAAGTGCAGGACACATTTCATTTCCTTTTTTTCCCTTTATCCTC
1 CCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACATTTCATTTCCTTTCTCTCCCTTTATCCTC
* * *
1196693 AAAGAGTAGGATACACTTTATTTCTTTTTCTCCTTTGTCCTCAAAGAG
66 AAAGAGTAAGATACACCTCATTTCTTTTTCTCCTTTGTCCTCAAAGAG
1196741 CATGACAAAC
Statistics
Matches: 98, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
118 3 0.03
119 41 0.42
120 27 0.28
121 26 0.27
122 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (120 bp):
CCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACATTTCATTTCCTTTCTCTCCCTTTATCCTC
AAAGAGTAAGATACACCTCATTTCTTTTTCTCCTTTGTCCTCAAAGAGTAAGATG
Found at i:1196652 original size:163 final size:168
Alignment explanation
Indices: 1196332--1197073 Score: 494
Period size: 163 Copynumber: 4.4 Consensus size: 168
1196322 CACACTTTCC
* * ** * *
1196332 TCATTTCC--TTTTTGCCTTTGTCCTCAAAGAGCGGGATGCACTTCATTTCCTTCTTTTTCCTTT
1 TCATTTCCTTTTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCC-T-TTTCTCC-TT
* * ** ** * * * *
1196395 TGTCCTCAAAGAGTAGGGCGCATTTTATTTCCTT-TTCTCCTTTGTCCTTAAAGAGCAGGGCACA
63 TGTCCTCAAAGAGTAAGACAAACCTCATTTCCTTATTCTCCTTTGTCCTCAAAAAG-A-TG-ACA
* *
1196459 TA-T-CATTT-TCTTTTCTTCTTTGTCCTCAAAGAGTAGGGTGCATT
125 AACTGCATTTCT-TTTTC-CCTTTGTCCTCAAAGAG-AGGGTGCATT
* * * *
1196503 TCATTTCCTTTTTTTCCCCTCGTCCTCAAAGAGCAGGACACACTTTATTTCCTTCTCTCCTTTAT
1 TCATTTCCTTTTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* * * * * *
1196568 CCTCAAAGAGTAAGA-AGCACCTCATTTTCTTATTTTCCTTTGTTCTCAAAGAG-T-A-AGA-TG
66 CCTCAAAGAGTAAGACA-AACCTCATTTCCTTATTCTCCTTTGTCCTCAAAAAGATGACAAACTG
* * ***
1196628 CCTTT-TTTTT-CCTTTGTCCTCAAAGTGCAGGACACATT
130 CATTTCTTTTTCCCTTTGTCCTCAAAGAG-AGGGTGCATT
* * * *
1196666 TCATTTCCTTTTTTTCCCTTTATCCTCAAAGAGTAGGATACACTTTATTTCTTTTTCTCCTTTGT
1 TCATTTCCTTTTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* * * * *
1196731 CCTCAAAGAGCATGACAAACTTCATTTCCTTCTTCTCCTTTGTCCTCAAAAAGCATGACAAACTT
66 CCTCAAAGAGTAAGACAAACCTCATTTCCTTATTCTCCTTTGTCCTCAAAAAG-ATGACAAACTG
* *
1196796 CATTTCCTTTTTCCCCTTTGTCCTCAAAGAGCGGGATGTATT
130 CATTT-CTTTTT-CCCTTTGTCCTCAAAGAGAGGG-TGCATT
* * * *
1196838 TCATTTCCTTTTTTT--GTTTGTCCTCTAAGAGCAGGACGCGC-TT-TTTCCTTTTCTCCTTTGT
1 TCATTTCCTTTTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
* **** ** * * * * * *
1196899 CCTCAAAGAGTAGGGTGCATTTCATTTCCTTCTTTTCCCTTTGTCTTCAAAGAACAGGACACA-T
66 CCTCAAAGAGTAAGACAAACCTCATTTCCTTATTCT-CCTTTGTCCTCAAA-AAGATGACAAACT
** * * ***
1196963 TTATTTCCTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATT
129 GCATTTCTTTTTC-CCTTTGTCCTCAAAGAG-AGGGTGCATT
* * * * * * * *
1197005 CCATTTCCTTCCTTTCCCCATTGTCCTCAAATAGCAGGACACACTTCATTTCTTTTTTTCCTTTG
1 TCATTTCCTT-TTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTG
1197070 TCCT
65 TCCT
1197074 TGAGGAGTAG
Statistics
Matches: 451, Mismatches: 95, Indels: 49
0.76 0.16 0.08
Matches are distributed among these distances:
163 121 0.27
164 1 0.00
165 8 0.02
166 8 0.02
167 36 0.08
168 60 0.13
169 21 0.05
170 73 0.16
171 34 0.08
172 54 0.12
173 35 0.08
ACGTcount: A:0.20, C:0.26, G:0.13, T:0.42
Consensus pattern (168 bp):
TCATTTCCTTTTTTTCCCTTTGTCCTCAAAGAGCAGGACACACTTTATTTCCTTTTCTCCTTTGT
CCTCAAAGAGTAAGACAAACCTCATTTCCTTATTCTCCTTTGTCCTCAAAAAGATGACAAACTGC
ATTTCTTTTTCCCTTTGTCCTCAAAGAGAGGGTGCATT
Found at i:1196720 original size:43 final size:41
Alignment explanation
Indices: 1196631--1197073 Score: 323
Period size: 43 Copynumber: 10.4 Consensus size: 41
1196621 TAAGATGCCT
*
1196631 TTTTTTTCCTTTGTCCTCAAAGTGCAGGACACATTTCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTT-ATTT-C
* * *
1196674 TTTTTTTCCCTTTATCCTCAAAGAGTAGGATACACTTTATTTC
1 TTTTTTT-CCTTTGTCCTCAAAGAGCAGGACACA-TTTATTTC
* * * *
1196717 TTTTTCTCCTTTGTCCTCAAAGAGCATGACAAACTTCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACA-TTTATTT-C
* * * * * *
1196760 TTCTTCTCCTTTGTCCTCAAAAAGCATGACAAACTTCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACA-TTTATTT-C
** * ***
1196803 TTTTTCCCCTTTGTCCTCAAAGAGCGGGATGTATTTCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTT-ATTT-C
* * * **
1196846 TTTTTTT-GTTTGTCCTCTAAGAGCAGGACGCGCTT-TTTC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTATTTC
* * * ***
1196885 CTTTTCTCCTTTGTCCTCAAAGAGTAGGGTGCATTTCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTT-ATTT-C
* * *
1196928 TTCTTTTCCCTTTGTCTTCAAAGAACAGGACACATTTATTTC
1 TT-TTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTATTTC
* * * *
1196970 CTTTTCTCCTTTGTCCTCAAAGAGCAAGACACATTCCATTTCC
1 TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATT-TATTT-C
** * * *
1197013 TTCCTTTCCCCATTGTCCTCAAATAGCAGGACACACTTCATTTC
1 TT--TTTTTCCTTTGTCCTCAAAGAGCAGGACACA-TTTATTTC
1197057 TTTTTTTCCTTTGTCCT
1 TTTTTTTCCTTTGTCCT
1197074 TGAGGAGTAG
Statistics
Matches: 322, Mismatches: 64, Indels: 29
0.78 0.15 0.07
Matches are distributed among these distances:
39 6 0.02
40 24 0.07
41 28 0.09
42 72 0.22
43 100 0.31
44 55 0.17
45 35 0.11
46 2 0.01
ACGTcount: A:0.20, C:0.27, G:0.12, T:0.42
Consensus pattern (41 bp):
TTTTTTTCCTTTGTCCTCAAAGAGCAGGACACATTTATTTC
Found at i:1198039 original size:50 final size:50
Alignment explanation
Indices: 1197924--1198049 Score: 137
Period size: 50 Copynumber: 2.5 Consensus size: 50
1197914 TTGTACTGAT
* * * * *
1197924 ACATTCTTCATTGTATCGATACATTCTGGGTTTAACCTAGATGTATCGAC
1 ACATTATTCAATGTATCGATACATTCTGGGTTTAACCCAGATGCATCAAC
* * * *
1197974 ACATTATTCATTGTATTGATACATTCTGGGTTTTACCCAGATGCATCAAT
1 ACATTATTCAATGTATCGATACATTCTGGGTTTAACCCAGATGCATCAAC
* *
1198024 ATATTCCTT-AATGTATCGATACATTC
1 ACATT-ATTCAATGTATCGATACATTC
1198050 AGGCATTTTC
Statistics
Matches: 64, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 62 0.97
51 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.13, T:0.40
Consensus pattern (50 bp):
ACATTATTCAATGTATCGATACATTCTGGGTTTAACCCAGATGCATCAAC
Found at i:1200560 original size:50 final size:50
Alignment explanation
Indices: 1200484--1200650 Score: 244
Period size: 51 Copynumber: 3.3 Consensus size: 50
1200474 GTTATTTCTA
*
1200484 AGGATACTCTAACCTTGGTTTTATTTCAAAAACATTGATTTTTCACAATTG
1 AGGATACTC-AACCCTGGTTTTATTTCAAAAACATTGATTTTTCACAATTG
* *
1200535 AGGATACTCAACCCTGGTTTTATTTCCAAAATATTGATTTTTCACAATTG
1 AGGATACTCAACCCTGGTTTTATTTCAAAAACATTGATTTTTCACAATTG
* * *
1200585 AGGATACTTCAACCCTGGTTTTATTTCTAAAACATCGATTTTTCACAATCG
1 AGGATAC-TCAACCCTGGTTTTATTTCAAAAACATTGATTTTTCACAATTG
*
1200636 CGGATACTCCAACCC
1 AGGATACT-CAACCC
1200651 CGTTATTTCC
Statistics
Matches: 106, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
50 46 0.43
51 60 0.57
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (50 bp):
AGGATACTCAACCCTGGTTTTATTTCAAAAACATTGATTTTTCACAATTG
Found at i:1200703 original size:130 final size:129
Alignment explanation
Indices: 1200536--1200788 Score: 312
Period size: 130 Copynumber: 2.0 Consensus size: 129
1200526 TCACAATTGA
* * * * * * * *
1200536 GGATACTCAACCCTGGTTTTATTTCCAAAATATTGATTTTTCACAAT-TGAGGATACTTCAAC-C
1 GGATACTCAACCCCGATTTTATTTCCAAAACACTGATTATTCACAATCAG-GGATACTCCAACAT
* *
1200599 CTGGTTTTATTTCTAAAACATCGATTTTTCACAATCGCGGATACTCCAACCCCGTTATTTCCAAG
65 C-GGTTTTATTTCTAAAACATCAATTTTTCACAATCGCGGATACTCCAACCCCATTATTTCCAAG
1200664 G
129 G
**
1200665 GGATACTCCAACCCCGATTTTATTTTTAAAACACTGATTATTCACAATCAGGGATACTCCAACAT
1 GGATACT-CAACCCCGATTTTATTTCCAAAACACTGATTATTCACAATCAGGGATACTCCAACAT
* * * * *
1200730 CGGTTTTATTTCTAAAACATTAATTTTTCACAATTGGGGATACTCTAACTCCATTATTT
65 CGGTTTTATTTCTAAAACATCAATTTTTCACAATCGCGGATACTCCAACCCCATTATTT
1200789 TTGAGGAAAT
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
129 7 0.07
130 95 0.91
131 2 0.02
ACGTcount: A:0.30, C:0.22, G:0.12, T:0.36
Consensus pattern (129 bp):
GGATACTCAACCCCGATTTTATTTCCAAAACACTGATTATTCACAATCAGGGATACTCCAACATC
GGTTTTATTTCTAAAACATCAATTTTTCACAATCGCGGATACTCCAACCCCATTATTTCCAAGG
Found at i:1200727 original size:51 final size:51
Alignment explanation
Indices: 1200664--1200774 Score: 141
Period size: 51 Copynumber: 2.2 Consensus size: 51
1200654 TATTTCCAAG
* * *
1200664 GGGATACTCCAACCCCGATTTTATTTTTAAAACACTGATTATTCACAATCA
1 GGGATACTCCAACACCGATTTTATTTCTAAAACACTAATTATTCACAATCA
* * * * **
1200715 GGGATACTCCAACATCGGTTTTATTTCTAAAACATTAATTTTTCACAATTG
1 GGGATACTCCAACACCGATTTTATTTCTAAAACACTAATTATTCACAATCA
1200766 GGGATACTC
1 GGGATACTC
1200775 TAACTCCATT
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.35
Consensus pattern (51 bp):
GGGATACTCCAACACCGATTTTATTTCTAAAACACTAATTATTCACAATCA
Found at i:1200866 original size:79 final size:79
Alignment explanation
Indices: 1200718--1200885 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
1200708 ACAATCAGGG
* * * *
1200718 ATACTCCAACATCGGTTTTATTTCTAAAACATTAATTTTTCACAATTGGGGATACTCTAACTCCA
1 ATACTCCAACATCAGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCTAACTCCA
* *
1200783 TTATTTTTGAGGAA
66 TTATTCTCGAGGAA
* ** * *
1200797 ATACTCCAACATCAGTTTTGTTTCCAAGGCATCGATTTTTCATAATCGGGGATACTCTAAC-CCT
1 ATACTCCAACATCAGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCTAACTCC-
* **
1200861 GTTATTCTCGAGGGG
65 ATTATTCTCGAGGAA
1200876 ATACTCCAAC
1 ATACTCCAAC
1200886 CCCATTTTTC
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 2 0.03
79 72 0.97
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (79 bp):
ATACTCCAACATCAGTTTTATTTCCAAAACATCAATTTTTCACAATCGGGGATACTCTAACTCCA
TTATTCTCGAGGAA
Found at i:1200896 original size:28 final size:28
Alignment explanation
Indices: 1200844--1200897 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
1200834 TTTCATAATC
* **
1200844 GGGGATACTCTAACCCTGTTATTCTCGA
1 GGGGATACTCCAACCCCATTATTCTCGA
*
1200872 GGGGATACTCCAACCCCATTTTTCTC
1 GGGGATACTCCAACCCCATTATTCTC
1200898 CCTAAAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.31
Consensus pattern (28 bp):
GGGGATACTCCAACCCCATTATTCTCGA
Found at i:1203244 original size:19 final size:21
Alignment explanation
Indices: 1203205--1203245 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
1203195 GTTGCCTTTG
*
1203205 TCCATGCATTTTTTACTATGT
1 TCCATGCATTTTTAACTATGT
1203226 TCCATGCA-TTTTAAC-ATGT
1 TCCATGCATTTTTAACTATGT
1203245 T
1 T
1203246 TAACATCTAG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 6 0.32
21 8 0.42
ACGTcount: A:0.22, C:0.20, G:0.10, T:0.49
Consensus pattern (21 bp):
TCCATGCATTTTTAACTATGT
Found at i:1206647 original size:159 final size:159
Alignment explanation
Indices: 1206480--1207606 Score: 472
Period size: 159 Copynumber: 7.1 Consensus size: 159
1206470 GATCAACCCC
* **
1206480 TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTCCAAGATTAGGAACCAAAAAGT
1 TAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTTTCCAAGATTAGGAACCAAAAACA
* * *
1206545 CATTCTCTTTATTAGGATACATGATATTGATGCTTTTGTTTCACAAGAAAAGCTTTTATTTCCAC
66 CATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTTCCAC
*
1206610 CGTTTTAGATAGAATCAAAGTTTGTCTCT
131 CATTTTAGATAGAATCAAAGTTTGTCTCT
* * * * * * * * *
1206639 TCAGTAAGACAAACAT-GAATACTCAT-ACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAA
1 TAAATAAGACAAACATCG-ATTCTCATAAC-AGTCTCCATTCTTTCCAAGATTAGGAACCAAAAA
* * * * ** * *
1206702 CATACTTTTCTT-ATAAGGATATACAATATTGGTGCTTTGGTTTCACAAG-AAAGACTTTT-TTC
64 CACA-TTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAG-CTTTTCTTT
** * * *
1206764 CCAATAATTTTTG-TA-AACTCTAGGTTTGTC-CT
127 CC-ACCATTTTAGATAGAA-TCAAAGTTTGTCTCT
* * * *** * * *
1206796 ATAAATGAGACAAACATGGATTCT-AGTAA-TGATC-CTCATTCATTT-TGTGATTAGGCACTAT
1 -TAAATAAGACAAACATCGATTCTCA-TAACAG-TCTC-CATTC-TTTCCAAGATTAGGAACCAA
* * * ** ** * * *
1206857 AAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTCC
61 AAACACATTCTCTTCATTAGGATACATGATATTGATG-CTTTGGTTTCACAAGAAAAGCTTTT-C
* * *** * * *
1206922 TTGCC-CTATTTTCCTTAAAATCAAACTTTATCTCT
124 TTTCCACCATTTTAGATAGAATCAAAGTTTGTCTCT
* * * *
1206957 TAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTCCAAGATTGGGAACCAAAAACA
1 TAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTTTCCAAGATTAGGAACCAAAAACA
* * * * *
1207022 CATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGT-AGCAAGAAAAGCTTTTCCTTCCA
66 CATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCA-CAAGAAAAGCTTTTCTTTCCA
**
1207086 TCGTTTTTA-ATAGAATCAAAGTTTG-CATCT
130 -CCATTTTAGATAGAATCAAAGTTTGTC-TCT
* * * * * ** *
1207116 TAAGTAAGACAAACAT-GAATACTCAT-ACTAATCCCCATTATTTTTAAGATTA-GACACCATAA
1 TAAATAAGACAAACATCG-ATTCTCATAAC-AGTCTCCATTCTTTCCAAGATTAGGA-ACCAAAA
** * * * ** * *
1207178 ACTTAGTCT-TGTCATAAGGATACACGATATTGGGGCTTTGGTTTCACAAGAAAGGCTTTT-TTC
63 ACACATTCTCT-TCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTT
* * * *
1207241 CCACTAATTTTTG-TA-AATTCTAAGTTAGT-TCCT
127 CCAC-CATTTTAGATAGAA-TCAAAGTTTGTCT-CT
* * * * * * * * * *
1207274 TAAATGAGACGAACA-CGAATTCT-AGTAA-TGATATATC-TTCATTT-TATGATTAGGCACTAT
1 TAAATAAGACAAACATCG-ATTCTCA-TAACAG-TCT-CCATTC-TTTCCAAGATTAGGAACCAA
* * * * * * * * * ** ** * * *
1207334 AAATATATTCTCCTAAATATGATAAAT-ATTATTAATGATTTTTTTTTGCATGGAAATCTTTTCT
61 AAACACATTCTCTTCATTAGGATACATGA-TATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCT
* * ** * *
1207398 TTGCC-CAATTTTTTG-TA-AAGTCAAAG-TAATCCCA
125 TT-CCACCA-TTTTAGATAGAA-TCAAAGTTTGTCTCT
* * * * * * *
1207432 TAAATAAGACAAGCATCGATTCTCGTAACTA-TCTCCATTATTTTCAGGATTGGGAACCTAAAAC
1 TAAATAAGACAAACATCGATTCTCATAAC-AGTCTCCATTCTTTCCAAGATTAGGAACCAAAAAC
* * * * * *
1207496 ACATTCCCTTCATTAGGATACATGACATAGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTCCCA
65 ACATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTTCCA
* **
1207561 CCA-TTTATGATAGAATCAAAGCTTGTCTAA
130 CCATTTTA-GATAGAATCAAAGTTTGTCTCT
1207591 TAAATAAGACAAACAT
1 TAAATAAGACAAACAT
1207607 GAATACTATG
Statistics
Matches: 694, Mismatches: 210, Indels: 128
0.67 0.20 0.12
Matches are distributed among these distances:
156 3 0.00
157 24 0.03
158 276 0.40
159 283 0.41
160 98 0.14
161 10 0.01
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (159 bp):
TAAATAAGACAAACATCGATTCTCATAACAGTCTCCATTCTTTCCAAGATTAGGAACCAAAAACA
CATTCTCTTCATTAGGATACATGATATTGATGCTTTGGTTTCACAAGAAAAGCTTTTCTTTCCAC
CATTTTAGATAGAATCAAAGTTTGTCTCT
Found at i:1206692 original size:430 final size:429
Alignment explanation
Indices: 1205886--1206743 Score: 1019
Period size: 430 Copynumber: 2.0 Consensus size: 429
1205876 CTCTAAGTTT
* * * * *
1205886 GTGCTTCAAATGAGACAAACATTGATTTTAGTAATGATCTTCTTTCATTTTATGATTAAGTACTA
1 GTGCTACAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTA
* * * ** *
1205951 AAAAGACATTCTTCTCAATAGGATAAATATTATTGTTGATTTTTTTTACACGAAAATCTTTTCTT
66 AAAACACATTCTCCTCAATAGGATAAATATTACTCATGATTTTTTTTACACGAAAATCATTTCTT
* ** * * * * ** *
1206016 TGTCGTACTTTCCTTAAAATCAAAGTTCATCCCTTAAATAAGATAAGAATCGATTCTTGTAATGA
131 TGCCCCACTTTCCTTAAAATCAAAGATCAACCCCTAAATAAGACAAGAATCGATTCTCATAAAGA
* * * *
1206081 TCTCCATTCCTTCCTAGAGTGGGAATCAAAAACACATTCCCTTCTTTAGGATACCTGACATTGAT
196 TCTCCATTCCTTCCAAGAGTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGAT
*
1206146 GCTTTGGTGTCGCAAGAAAAGCTTTTCACTCCACCGTTTCTAATAAAATCAAAGTTTACCTCTTA
261 GCTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCGTTTCTAATAAAATCAAAGTTTACCTCTTA
* * * *
1206211 AATAGGACACACATGAACAGTAATACTAATCCCAATTATATTTAGGATTAGGCACCATAAACATA
326 AATAAGACAAACATGAACACTAATACTAATCCCAATTATATTTAAGATTAGGCACCATAAACATA
* * *
1206276 GTCTTCTCATAAGTATACACGATATTGGTGCTTTGGTTC
391 CTCTTCTCATAAGGATACACAATATTGGTGCTTTGGTTC
**
1206315 GTGCTACAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTTGGCA-TC
1 GTGCTACAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACT-
* ** ** *
1206379 ATAAACACATTCTCCTCTTTAGGATAAATGA-TACTCATGATTTTTTTTTGTATGAAAATCATTT
65 AAAAACACATTCTCCTCAATAGGATAAAT-ATTACTCATGA-TTTTTTTTACACGAAAATCATTT
* *
1206443 CTTTGCCCCATTTTCCTTAAAATCAAAGATCAACCCCTAAATAAGACAAGCATCGATTCTCATAA
128 CTTTGCCCCACTTTCCTTAAAATCAAAGATCAACCCCTAAATAAGACAAGAATCGATTCTCATAA
* * ** * *
1206508 CAG-TCTCCATTCTTTCCAAGATTAGGAACCAAAAAGTCATTCTCTT-TATTAGGATACATGATA
193 -AGATCTCCATTCCTTCCAAGAGTAGGAACCAAAAACACATTCCCTTCT-TTAGGATACATGACA
* * * * *
1206571 TTGATGCTTTTGTTTCACAAGAAAAGCTTTT-ATTTCCACCGTTT-TAGATAGAATCAAAGTTTG
256 TTGATGCTTTGGTGTCACAAGAAAAGCTTTTCA-CTCCACCGTTTCTA-ATAAAATCAAAGTTTA
* * * * * * *
1206634 TCTCTTCAGTAAGACAAACATGAATACTCATACTAATCCCCATT-TTTTTCAAGATTAGGCACCA
319 CCTCTTAAATAAGACAAACATGAACACTAATACTAATCCCAATTATATTT-AAGATTAGGCACCA
* * *
1206698 TAAACATACTTTTCTTATAAGGATATACAATATTGGTGCTTTGGTT
383 TAAACATACTCTTCTCATAAGGATACACAATATTGGTGCTTTGGTT
1206744 TCACAAGAAA
Statistics
Matches: 357, Mismatches: 64, Indels: 15
0.82 0.15 0.03
Matches are distributed among these distances:
428 1 0.00
429 93 0.26
430 262 0.73
431 1 0.00
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (429 bp):
GTGCTACAAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAAGCACTA
AAAACACATTCTCCTCAATAGGATAAATATTACTCATGATTTTTTTTACACGAAAATCATTTCTT
TGCCCCACTTTCCTTAAAATCAAAGATCAACCCCTAAATAAGACAAGAATCGATTCTCATAAAGA
TCTCCATTCCTTCCAAGAGTAGGAACCAAAAACACATTCCCTTCTTTAGGATACATGACATTGAT
GCTTTGGTGTCACAAGAAAAGCTTTTCACTCCACCGTTTCTAATAAAATCAAAGTTTACCTCTTA
AATAAGACAAACATGAACACTAATACTAATCCCAATTATATTTAAGATTAGGCACCATAAACATA
CTCTTCTCATAAGGATACACAATATTGGTGCTTTGGTTC
Found at i:1207218 original size:477 final size:472
Alignment explanation
Indices: 1206322--1207895 Score: 1929
Period size: 477 Copynumber: 3.3 Consensus size: 472
1206312 TTCGTGCTAC
*
1206322 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTTGGCA-TCATAAACA
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACT-ATAAACA
* * * * * *
1206386 CATTCTCCTCTTTAGGATAAATGATACTCATGATTTTTTTTTGTATGAAAATCATTTCTTTGCCC
65 CATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCCTTGCCC
* * *
1206451 CATTTTCCTTAAAATCAAAGATCAA-CCCCTAAATAAGACAAGCATCGATTCTCATAACAGTCTC
130 TATTTTCCTTAAAATCAAA-AT-AATCCCATAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* ** * * *
1206515 CATTCTTTCCAAGATTAGGAACCAAAAAGTCATTCTCTTTATTAGGATACATGATATTGATGCTT
193 CATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTT
* * * *
1206580 TTGTTTCA-CAAGAAAAGCTTTTATTTCCACCG-TTTTAGATAGAATCAAAGTTTGTCTCTTCAG
258 TGGTGT-AGCAAGAAAAGCTTTT-CTTCCACCGTTTTTA-ATAGAATCAAAGTTTG-CTCTTAAG
* *
1206643 TAAGACAAACATGAATACTCATACTAATCCCCATTTTTTTCAAGATTAGGCACCATAAACATACT
319 TAAGACAAACATGAATACTCATACTAATCCCCATTTTTTT-AAGATTAGACACCATAAACATAGT
* * * * * *
1206708 TTTCTTATAAGGATATACAATATTGGTGCTTTGGTTTCACAAGAAAGACTTTTTTCCCAATAATT
383 CTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATT
*
1206773 TTTGTAAACTCTAGGTTTGTCCTAT
448 TTTGTAAACTCTAAGTTTGTCCTAT
* *
1206798 AAATGAGACAAACATGGATTCTAGTAATGATCCTCATTCATTTTGTGATTAGGCACTATAAACAC
1 AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACAC
*
1206863 ATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTTGCATGGAAATCTTTTCCTTGCCC
66 ATTCTCCTCATTAGGATAAATGATATTGATGA-TTTTTTTTTGCATGAAAATCTTTTCCTTGCCC
* * * *
1206928 TATTTTCCTTAAAATCAAACTTTATCTCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
130 TATTTTCCTTAAAATCAAA-ATAATCCCATAAATAAGACAAGCATCGATTCTCGTAACAGTCTCC
* *
1206993 ATTCCTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTT
194 ATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTT
*
1207058 GGTGTAGCAAGAAAAGCTTTTCCTTCCATCGTTTTTAATAGAATCAAAGTTTGCATCTTAAGTAA
259 GGTGTAGCAAGAAAAGCTTTT-CTTCCACCGTTTTTAATAGAATCAAAGTTTGC-TCTTAAGTAA
*
1207123 GACAAACATGAATACTCATACTAATCCCCATTATTTTTAAGATTAGACACCATAAACTTAGTCTT
322 GACAAACATGAATACTCATACTAATCCCCATT-TTTTTAAGATTAGACACCATAAACATAGTCTT
* *
1207188 GTCATAAGGATACACGATATTGGGGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTT
386 CTCATAAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTT
* *
1207253 GTAAATTCTAAGTTAGTTCCT-T
451 GTAAACTCTAAGTTTG-TCCTAT
* * * * *
1207275 AAATGAGACGAACACGAATTCTAGTAATGATATATC-TTCATTTTATGATTAGGCACTATAAATA
1 AAATGAGACAAACATGGATTCTAGTAATGATCT-TCATTCATTTTATGATTAGGCACTATAAACA
* * * * * * *
1207339 TATTCTCCTAAATATGATAAAT-ATTATTAATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCC
65 CATTCTCCTCATTAGGATAAATGA-TATTGATGATTTTTTTTTGCATGAAAATCTTTTCCTTGCC
* * * *
1207403 CAATTTT-TTGTAAAGTCAAAGTAATCCCATAAATAAGACAAGCATCGATTCTCGTAACTA-TCT
129 CTATTTTCCT-TAAAATCAAAATAATCCCATAAATAAGACAAGCATCGATTCTCGTAAC-AGTCT
* * * * *
1207466 CCATTATTTTCAGGATTGGGAACCTAAAACACATTCCCTTCATTAGGATACATGACATAGATGCT
192 CCATTCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCT
* * * * * *
1207531 TTGGTGTCGCAAGAAAAGCTTTTCTTCCCACCATTTATGATAGAATCAAAGCTTG-TCTAATAAA
257 TTGGTGTAGCAAGAAAAGCTTTTCTT-CCACCGTTTTTAATAGAATCAAAGTTTGCTCT--TAAG
* * * * * *
1207595 TAAGACAAACATGAATACT-ATGCCAATCCCCATTCTTTTCAGGATTAGACATCATAAAGATAGT
319 TAAGACAAACATGAATACTCATACTAATCCCCATT-TTTTTAAGATTAGACACCATAAACATAGT
* * * ** *
1207659 CTTCTCTTTAGGATACACGATATTGATATTTTGGTTTCACAAGAAAGGCATTTTTCCCACTAATT
383 CTTCTCATAAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATT
* * * * *
1207724 TTTGTTAAGTATAAGTTTATGCC-AC
448 TTTGTAAACTCTAAGTTTGT-CCTAT
* *
1207749 AAATGA-ATCAAACATGGATTCTAGTAATGATCTTCATTCATTTT-TGGATTAGGCTCCATAAAC
1 AAATGAGA-CAAACATGGATTCTAGTAATGATCTTCATTCATTTTAT-GATTAGGCACTATAAAC
* * * *
1207812 ACATTCTCCACATTAGGATAAATGATATTGA-AAATTTTTTTTGCGTGAAAATC-TTTCCTTTGC
64 ACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCC-TTGC
* * *
1207875 CCTCTTTTTCTTAATATCAAA
128 CCTATTTTCCTTAAAATCAAA
1207896 GTTCATCCCA
Statistics
Matches: 951, Mismatches: 124, Indels: 49
0.85 0.11 0.04
Matches are distributed among these distances:
472 4 0.00
473 44 0.05
474 186 0.20
475 164 0.17
476 139 0.15
477 398 0.42
478 16 0.02
ACGTcount: A:0.33, C:0.18, G:0.13, T:0.36
Consensus pattern (472 bp):
AAATGAGACAAACATGGATTCTAGTAATGATCTTCATTCATTTTATGATTAGGCACTATAAACAC
ATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTTTTGCATGAAAATCTTTTCCTTGCCCT
ATTTTCCTTAAAATCAAAATAATCCCATAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
TCTTTCCAAGATTGGGAACCAAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGG
TGTAGCAAGAAAAGCTTTTCTTCCACCGTTTTTAATAGAATCAAAGTTTGCTCTTAAGTAAGACA
AACATGAATACTCATACTAATCCCCATTTTTTTAAGATTAGACACCATAAACATAGTCTTCTCAT
AAGGATACACGATATTGGTGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCACTAATTTTTGTAAA
CTCTAAGTTTGTCCTAT
Found at i:1208806 original size:476 final size:475
Alignment explanation
Indices: 1207904--1209803 Score: 2157
Period size: 476 Copynumber: 4.0 Consensus size: 475
1207894 AAGTTCATCC
* * * *
1207904 CATTAGGATACATGATATTGATGCTTTGGTGTGGCAAGAAAAACTTTTATTTCCACCGTTTTTGA
1 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * *
1207969 CATAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTT
66 TAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * ** *
1208034 GGGATTAGGCACCGTAAACATAGTATTCTCATAAGGATACACGATATCGATGCTTTGGTTTCCCA
131 GGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCCATGGTTTCACA
* * * * * *
1208099 AGAAAGGCTTTCTTCCCACCAATTTTTGCAAAGTCTAAGTTTGTGGCTCAAATGAGACAAACACG
196 AGAAAAGATTTCTT-CCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * *
1208164 AATTCTAGTAATGATCTTCATTCATTTTGTCATTAGGCACTATAAACACATTCTCCTCATTACGA
260 GATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGA
* * * * * * *
1208229 TAAATGATACTAATGATATTCTTTTGCATGGAAATCTTTTCTTTGCCTTATTCTTCTTAAAATTA
325 TAAATGATATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCA
* * *
1208294 AAGTTCATCCCATAAATAAGACAAGCATTGATTCTCAAAACAATCTCCATTATTTTCAGGATTGG
390 AAGTTCATCCCATAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGATTGG
* *
1208359 GAACCTAAAACAAATTCCTTT
455 GAACCTAAAACACATTCCCTT
* * * *
1208380 CATTAGGATACATGACGTTGATGCTTTGGTGTCTCAAGGAAAGCTTTTCTTTCCACCGTTCTTGA
1 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * *
1208445 TAGAATCAAACTTTGCATCTTAAATAGGATAAACATGAATAGTCATACTAGTCCCCATTCTTTTC
66 TAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * *
1208510 GGGATTAGGCACCACAAACATAGTCTTCTTATTA-GATACACAATATTGGA-GCCATGGTTTCAC
131 GGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATT-GATGCCATGGTTTCAC
* * *** * *
1208573 AAGAAAAGATTTTTTCTCACCAATTTTTGTAAAGTCTAGGTTCCAACCTCAAGTGAGACAATCAT
195 AAGAAAAGATTTCTTC-CACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
1208638 GGATTCTAGCAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTTATTAGA
259 GGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGG
* * * * * * *
1208703 ATAAATGAGATTTACGATTTTTGTTTTGTATAGAAATCTTTTCTTGGCCCTATTTTCCTTAAAAT
324 ATAAATGATATTGACGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAAT
* * ** * **
1208768 CAAAGTTTATCTCC-TAAATAAGACAACCATCAATTCTCATAATAGTCTCCATTCCTTTCAAGAT
388 CAAAGTTCATC-CCATAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGAT
* *
1208832 TGGGAACCAAAAAGACATTCCCTT
452 TGGGAACCTAAAACACATTCCCTT
* * * * *** *
1208856 CATTAGGGTACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTTTTTCTATAATTTTTTA
1 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * * * *
1208921 TAGAATCAAAGTTTGTCTCTTAAAAAAGACTAACATGAATACTCATACTAAT---CATTCTTTTC
66 TAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * ** * *
1208983 TGGATTTGGCACCATAAACATAATCTTCTCA-ATAGGACACATGATATTGACGCCATGGTTTCAT
131 GGGATTAGGCACCATAAACATAGTCTTCTCATA-AGGATACACAATATTGATGCCATGGTTTCAC
* * ***
1209047 AAGAAATATG-TTT-TTCCAACAATTTTTGTAAAGTCTATGTTCGTGTGACAAATGAGACAAACA
195 AAGAAA-A-GATTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
1209110 TGGATTCTAATAATGATCTTCATTCATTTTGGGATTAGGCACTATAAACAAAATTCTCCTCATTA
258 TGGATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAAC-ACATTCTCCTCATTA
* * * *
1209175 GGATAAATGATATTGATC-ATTTT-TTCTTGCATTGAAATCCTTCCTTTGCCCTATTTTTGTTAA
322 GGATAAATGATATTGA-CGATTTTCTT-TTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAA
* * * * *
1209238 AATCAAAGTTCATCCCATGAACAAGACAAGCATGGATTCT-AGTAATAGTCTCCATTATTTTCTA
385 AATCAAAGTTCATCCCATAAATAAGACAAGCATTGATTCTCA-TAACAGTCTCCATTATTTTCAA
* *
1209302 GATTGAGAACCTAAAACACTTTCCCTT
449 GATTGGGAACCTAAAACACATTCCCTT
* * * * * *
1209329 CATTAGGCTCCATGACATTGATGCTTTGCTGTCGCAACAAAAGCTTTACTTTCCATCGTTTTTGA
1 CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
* * *
1209394 TAAAATCAAAGTTTGCCTCTTAAGTAGGACACACATGAATAGTCATACTAATCCCCATTCTTTTC
66 TAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
* * * * * *
1209459 AGGATT-GGCACC-TAAACAAAG-CATTCTCATAAGGATACACGATATTGATG-CTTTGTCTTTA
131 GGGATTAGGCACCATAAACATAGTC-TTCTCATAAGGATACACAATATTGATGCCATGGT-TTCA
* * * * *
1209520 CAAGAAAAGCTTCCTTCCTACCAA-TTTTGTAAAGTCTAAGTTCGTGCCTTAATTGAGACAAATA
194 CAAGAAAAGATTTCTTCC-ACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
1209584 TGGATTCTAGTAAAT-ATTCTTCATTCATTTTGTAATTAGGCACTATAATCAGATTCTCCTCATT
258 TGGATTCTAGT-AATGA-TCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATT
* * * * *
1209648 AGGATAAATCATATTGATGATTTTCTTTTGTATGGAAACCTTTTCTTT-CTCTTATTTTTCTTAA
321 AGGATAAATGATATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTATTTTTCTTAA
* * * * * * *
1209712 AATCAATGTTTATCTCTTAAATAAGACAAGCATTGATTTTCGTAACAGTCTCCATTCTTTTCAAG
385 AATCAAAGTTCATCCCATAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAG
*
1209777 ATTGGGAACC-AATAACACAATCCCTT
450 ATTGGGAACCTAA-AACACATTCCCTT
1209803 C
1 C
1209804 GTCTCTTGAA
Statistics
Matches: 1187, Mismatches: 207, Indels: 62
0.82 0.14 0.04
Matches are distributed among these distances:
472 6 0.01
473 338 0.28
474 280 0.24
475 194 0.16
476 367 0.31
477 2 0.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
CATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGA
TAGAATCAAAGTTTGCCTCTTAAATAGGACAAACATGAATAGTCATACTAATCCCCATTCTTTTC
GGGATTAGGCACCATAAACATAGTCTTCTCATAAGGATACACAATATTGATGCCATGGTTTCACA
AGAAAAGATTTCTTCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCATTAGGAT
AAATGATATTGACGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAA
AGTTCATCCCATAAATAAGACAAGCATTGATTCTCATAACAGTCTCCATTATTTTCAAGATTGGG
AACCTAAAACACATTCCCTT
Found at i:1210078 original size:393 final size:392
Alignment explanation
Indices: 1209421--1210196 Score: 1003
Period size: 393 Copynumber: 2.0 Consensus size: 392
1209411 TCTTAAGTAG
* * * *
1209421 GACACACATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTGGCACCTAAACAAAGCATTCT
1 GACAAACATGAATAGTCATACTAATCACCATTCTTTTCAGAATAGGCACCTAAACAAAGCATTCT
* * *
1209486 CATAAGGATACACGATATTGATGCTTTGTCTTTACAAGAAAAGCTTCCTTCCTACCAATTTTGTA
66 CAAAAGGATACACGATATTGATGCTTTGTCTTTACAAGAAAAGCTTCCTCCCCACCAATTTTGTA
* ** * *
1209551 AAGTCTAAGTTCGTGCCTTAATTGAGACAAATATGGATTCTAGTAAATATTCTTCATTCATTTTG
131 AAGTC--A--TCGTGCCTCAAACGAGACAAACATGGATTCTAGTAAATATTCTTCATTCATTTTA
* * * * * *
1209616 TAATTAGGCACTATAATCAGATTCTCCTCATTAGGATAAATCATATTGATGATTTTCTTTTGTAT
192 TAATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATCATACTGACGATTTTCTATTGCAT
* **
1209681 GGAAACCTTTTCTTTCTCTTATTTTTCT-TAAAATCAATGTTTATCTCTTAAATAAGACAAGCAT
257 GGAAACCTTTTCTTTCCCTTATTTTT-TGTAAAATCAAAATTTATCTCTTAAATAAGACAAGCAT
* * * *
1209745 TGATTTTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACACAATCCCTTCGTCTCT
321 CGATTCTCGTAACAGTCACCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCGTCTCT
1209810 TGAATAA
386 TGAATAA
* *
1209817 GACAAACATGAATAGTCATACTAATCACCATTCTTTTCGAGAATAGGCACCCTAAACATAGTATT
1 GACAAACATGAATAGTCATACTAATCACCATTCTTTTC-AGAATAGGCA-CCTAAACAAAGCATT
** * **
1209882 CTCAAAAGGATACACGATATTGATG-TTT-TCCTTTGTTAA-AAAAGGCTTTCTCCCCACCTTGT
64 CTCAAAAGGATACACGATATTGATGCTTTGT-CTTT-ACAAGAAAA-GCTTCCTCCCCACC--AA
1209944 TTTTGTAAAGTC-T-GTGCCTCAAACGAGACAAACATGGATTCTAGT-AATGA-TCTTCATTCAT
124 TTTTGTAAAGTCATCGTGCCTCAAACGAGACAAACATGGATTCTAGTAAAT-ATTCTTCATTCAT
* **
1210005 TTTATGATTAGAG-ACTATAAACACATTCTCCTCATTAGGATAAATGGTACTGACGATTTTCTAT
188 TTTATAATTAG-GCACTATAAACACATTCTCCTCATTAGGATAAATCATACTGACGATTTTCTAT
* *
1210069 TGCATGGAAATCTTTTCTTTCCCTTATTTTTTGTAAAATCAAAATTTATCTCTTAATTAAGACAA
252 TGCATGGAAACCTTTTCTTTCCCTTATTTTTTGTAAAATCAAAATTTATCTCTTAAATAAGACAA
* * *
1210134 GCATCGATTCTCGTAACTGTCACTATTCTTTTCAAGATTGGGAACCAAAAACACATTCCCTTC
317 GCATCGATTCTCGTAACAGTCACCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTC
1210197 ATTAGGATAC
Statistics
Matches: 330, Mismatches: 40, Indels: 23
0.84 0.10 0.06
Matches are distributed among these distances:
392 1 0.00
393 180 0.55
394 30 0.09
395 1 0.00
396 37 0.11
397 19 0.06
398 50 0.15
400 12 0.04
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (392 bp):
GACAAACATGAATAGTCATACTAATCACCATTCTTTTCAGAATAGGCACCTAAACAAAGCATTCT
CAAAAGGATACACGATATTGATGCTTTGTCTTTACAAGAAAAGCTTCCTCCCCACCAATTTTGTA
AAGTCATCGTGCCTCAAACGAGACAAACATGGATTCTAGTAAATATTCTTCATTCATTTTATAAT
TAGGCACTATAAACACATTCTCCTCATTAGGATAAATCATACTGACGATTTTCTATTGCATGGAA
ACCTTTTCTTTCCCTTATTTTTTGTAAAATCAAAATTTATCTCTTAAATAAGACAAGCATCGATT
CTCGTAACAGTCACCATTCTTTTCAAGATTGGGAACCAAAAACACAATCCCTTCGTCTCTTGAAT
AA
Found at i:1211478 original size:474 final size:473
Alignment explanation
Indices: 1210348--1211555 Score: 1352
Period size: 474 Copynumber: 2.5 Consensus size: 473
1210338 CATTATTCCC
* * *
1210348 ACCAATTTTTGTAAAGTCTAAGTTTGTGCCTCAAAATGAGATGAACATGAATTCTAGTAGTGATC
1 ACCAA-TTTTGTAAAGTCTAAGTTTGTGCCT--AAATGAGATAAACATGGATTCTAGTAATGATC
** * *
1210413 TTCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTTATTAGGATAAATGATATTTATGA
63 TTCATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGA
* * *
1210478 TTTTTGTTTTGTATGAAAATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATCTCCTAA
128 -TTTT-TTTTGTATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAATGTTTATC-CCTAA
* * * * *
1210543 TAAGACAACCATCAATTCCCA-TAATAGTCTCCATTCCTTTCAAGATTGGGAACCAAAAAGACAT
190 TAAGACAAGCATCGATT-CTAGTAATAGTCTCCATTCTTTTCAAGATTGGGAACC-AAAACACAT
** * * *** * ** * *
1210607 TCCCTTCATTAAGGTACATGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTTTTTTCTATAA
253 TCCAATCATTAAGGTACACGACATTGATGCTTTGCTGTCACAACAAAAGCTTTTACTTTCCACAA
* * *
1210672 TTTTTGATAAAATCAAAGTTTGTCTCTTAAAGAAGACTAACATGAATACTCATACTAATCTCTAT
318 TTTTTGATAAAATCAAAGTTTGCCTCTTAAAGAAGACTAACATGAATACTCATACTAATCCCCAT
* * * *
1210737 TCTTTTCAGGATTTGGCACCATAAACATAATCTTCTCATTAGGACACATGATATTGGTGCCTGGT
383 TCTTTTCAGGATTTGGCACCATAAACATAAGCTTCTCATAAGGACACACGATATTGATGCCTGGT
* **
1210802 TTCCTAAGAAAATGTGTTTTTCCAAT
448 TTACTAAGAAAATGTGTCCTTCCAAT
* * *
1210828 A--ATTTTTGTAAAGTCTATGTTCGTGTGAC-AAATGAGATAAACATGGATTCTAGTAATGATCT
1 ACCAATTTTGTAAAGTCTAAGTT--TGTGCCTAAATGAGATAAACATGGATTCTAGTAATGATCT
* * * *
1210890 TCACTCATTTTGGGATTAGGCACTATAAACAAATTCTCCTCATTGGGATAAATGATATTGATCAT
64 TCATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGAT
* * * * *
1210955 TTTTTCTTGCATTGAAATCTTTCCTTTGCCCTATTTTTCTTAAAATCAATGTTCATCCCATGAAC
129 TTTTT-TTGTATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAATGTTTATCCC-T-AAT
* * * * *
1211020 AAGACAAGCATGGATTCTAGTAATAGTCTCCATTATTTTCCAGATTGAGAACCTAAAACACTTTC
191 AAGACAAGCATCGATTCTAGTAATAGTCTCCATTCTTTTCAAGATTGGGAACC-AAAACACATTC
* **
1211085 CAATCATT-AGGCTCCACGACATTGATGCTTTGCTGTCACAACAAAAGC-TTTACTTTCCACCGT
255 CAATCATTAAGG-TACACGACATTGATGCTTTGCTGTCACAACAAAAGCTTTTACTTTCCACAAT
* * * *
1211148 TTTTGATAAAATCAAAGTTTGCCTCTTAAATAGGAC-ACATATGAATAGTCATACTAATCCCCAT
319 TTTTGATAAAATCAAAGTTTGCCTCTTAAAGAAGACTA-ACATGAATACTCATACTAATCCCCAT
* *
1211212 TCTTTTCAGGA-TTGGCACC-TAAACA-AAGCATTCTCATAAGGATACACGATATTGATGCTTTG
383 TCTTTTCAGGATTTGGCACCATAAACATAAGC-TTCTCATAAGGACACACGATATTGATGC-CTG
1211274 GTTTTAC-AAGAAAA-GCT-TCCTT-C-AT
446 G-TTTACTAAGAAAATG-TGTCCTTCCAAT
* * *
1211299 ACCAATTTTGTAAAGTCTAAGTTTGTGCCTTAATTGAGACAAATATGGATTCTAGTAAAT-ATTC
1 ACCAATTTTGTAAAGTCTAAGTTTGTGCC-TAAATGAGATAAACATGGATTCTAGT-AATGA-TC
* * * * * *
1211363 TTCATTCATTTTGTAATTAGGAACTATAATCAGATTCTCCTCATTAGGATAAATCATATTGCTGA
63 TTCATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGA
* *
1211428 TTTTCTTTTGTATGGAAACCTTTTCTTT-CTCCTATTTTTCTTAAAATCAATGTTTATCTCTTAA
128 TTTT-TTTTGTATGGAAATCTTTTCTTTGC-CCTATTTTTCTTAAAATCAATGTTTATC-CCT-A
* * *
1211492 ATAAGACAAGCATTGATTTTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAATAACACA
189 ATAAGACAAGCATCGATTCTAGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAA-AACACA
1211556 ATCCCTTCGT
Statistics
Matches: 611, Mismatches: 95, Indels: 50
0.81 0.13 0.07
Matches are distributed among these distances:
471 8 0.01
472 4 0.01
473 78 0.13
474 187 0.31
475 136 0.22
476 174 0.28
477 17 0.03
478 1 0.00
479 5 0.01
480 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (473 bp):
ACCAATTTTGTAAAGTCTAAGTTTGTGCCTAAATGAGATAAACATGGATTCTAGTAATGATCTTC
ATTCATTTTGTGATTAGGCACTATAAACAAATTCTCCTCATTAGGATAAATGATATTGATGATTT
TTTTTGTATGGAAATCTTTTCTTTGCCCTATTTTTCTTAAAATCAATGTTTATCCCTAATAAGAC
AAGCATCGATTCTAGTAATAGTCTCCATTCTTTTCAAGATTGGGAACCAAAACACATTCCAATCA
TTAAGGTACACGACATTGATGCTTTGCTGTCACAACAAAAGCTTTTACTTTCCACAATTTTTGAT
AAAATCAAAGTTTGCCTCTTAAAGAAGACTAACATGAATACTCATACTAATCCCCATTCTTTTCA
GGATTTGGCACCATAAACATAAGCTTCTCATAAGGACACACGATATTGATGCCTGGTTTACTAAG
AAAATGTGTCCTTCCAAT
Found at i:1211847 original size:393 final size:392
Alignment explanation
Indices: 1211170--1211956 Score: 955
Period size: 393 Copynumber: 2.0 Consensus size: 392
1211160 CAAAGTTTGC
* * * *
1211170 CTCTTAAATAGGACACATATGAATAGTCATACTAATCCCCATTCTTTTCAGGATTGGCACCTAAA
1 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCACCATTCTTTTCAGGATTGGCACCTAAA
* * * *
1211235 CAAAGCATTCTCATAAGGATACACGATATTGATGCTTTGGTTTTACAAGAAAAGCTTCCTTCATA
66 CAAAGCATTCTCAAAAGGATACACGATATTGATGCTTTGCTTTTACAAGAAAAGCTTCCTCCACA
* ** *
1211300 CCAATTTTGTAAAGTCTAAGTTTGTGCCTTAATTGAGACAAATATGGATTCTAGTAAATATTCTT
131 CCAATTTTGTAAAGTCTAA---T-TGCCTCAAACGAGACAAACATGGATTCTAGTAAATATTCTT
* * * *
1211365 CATTCATTTTGTAATTAGGAACTATAATCAGATTCTCCTCATTAGGATAAATCATATTGCTGATT
192 CATTCATTTTATAATTAGGAACTATAAACACATTCTCCTCATTAGGATAAATCATACTGCTGATT
** * * * **
1211430 TTCTTTTGTATGGAAACCTTTTCTTTCTCCTATTTTTCT-TAAAATCAATGTTTATCTCTTAAAT
257 TTCAATTGCATGGAAACATTTTCTTTCCCCTATTTTT-TGTAAAATCAAAATTTATCTCTTAAAT
* * *
1211494 AAGACAAGCATTGATTTTCGTAA-TAGTCTCCATTCTTTTCAAGATTGGGAACC-AATAACACAA
321 AAGACAAGCATCGATTCTCGTAACT-GTCACCATTCTTTTCAAGATTGGGAACCGAA-AACACAA
1211557 TCCCTTCGT
384 TCCCTTCGT
* *
1211566 CTCTTGAATAAGACAAACATGAATAGTCATACTAATCACCATTCTTTTCGGGATTAGGCACCCTA
1 CTCTTAAATAAGACAAACATGAATAGTCATACTAATCACCATTCTTTTCAGGATT-GGCA-CCTA
* * * *
1211631 AACATAGTATTCTCAAAAGGATACACGATATTGATGCTTTGCTTTGGTA-AA-AAAGGCTTTCTC
64 AACAAAGCATTCTCAAAAGGATACACGATATTGATGCTTTGCTTT--TACAAGAAAAGCTTCCTC
* **
1211694 CCCACCTTGTTTTTGTAAAGTCT-A-TGCCTCAAACGAGACAAACATGGATTCTAGT-AATGA-T
127 CACACC--AATTTTGTAAAGTCTAATTGCCTCAAACGAGACAAACATGGATTCTAGTAAAT-ATT
* * ** **
1211755 CTTCATTCCTTTTATGATTAGGGGCTATAAACACATTCTCCTCATTAGGATAAATGGTACTGAC-
189 CTTCATTCATTTTATAATTAGGAACTATAAACACATTCTCCTCATTAGGATAAATCATACTG-CT
*
1211819 GATTTTCAATTGCATGGAAATATTTTCTTTCCCCTATTTTTTGTAAAATCAAAATTTATCTCTTA
253 GATTTTCAATTGCATGGAAACATTTTCTTTCCCCTATTTTTTGTAAAATCAAAATTTATCTCTTA
* * *
1211884 ATTAAGATAAGCATCGATTCTCGTAACTGTCACTATTCTTTTCAAGATTGGGAACCGAAAACACA
318 AATAAGACAAGCATCGATTCTCGTAACTGTCACCATTCTTTTCAAGATTGGGAACCGAAAACACA
*
1211949 TTCCCTTC
383 ATCCCTTC
1211957 ATTAGGATAC
Statistics
Matches: 334, Mismatches: 46, Indels: 25
0.82 0.11 0.06
Matches are distributed among these distances:
392 1 0.00
393 172 0.51
394 32 0.10
396 49 0.15
397 4 0.01
398 58 0.17
399 3 0.01
400 15 0.04
ACGTcount: A:0.31, C:0.19, G:0.13, T:0.36
Consensus pattern (392 bp):
CTCTTAAATAAGACAAACATGAATAGTCATACTAATCACCATTCTTTTCAGGATTGGCACCTAAA
CAAAGCATTCTCAAAAGGATACACGATATTGATGCTTTGCTTTTACAAGAAAAGCTTCCTCCACA
CCAATTTTGTAAAGTCTAATTGCCTCAAACGAGACAAACATGGATTCTAGTAAATATTCTTCATT
CATTTTATAATTAGGAACTATAAACACATTCTCCTCATTAGGATAAATCATACTGCTGATTTTCA
ATTGCATGGAAACATTTTCTTTCCCCTATTTTTTGTAAAATCAAAATTTATCTCTTAAATAAGAC
AAGCATCGATTCTCGTAACTGTCACCATTCTTTTCAAGATTGGGAACCGAAAACACAATCCCTTC
GT
Done.