Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold463
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 186999
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 1 of 2
Found at i:68 original size:21 final size:23
Alignment explanation
Indices: 44--93 Score: 70
Period size: 20 Copynumber: 2.3 Consensus size: 23
34 TGCAATTAAA
44 AAAAATTTTAAATTTT-TACA-T
1 AAAAATTTTAAATTTTATACATT
*
65 AAAAA-TTTAAATTTTATATATT
1 AAAAATTTTAAATTTTATACATT
87 AAAAATT
1 AAAAATT
94 AAACCATGCA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 10 0.40
21 8 0.32
22 6 0.24
23 1 0.04
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (23 bp):
AAAAATTTTAAATTTTATACATT
Found at i:11790 original size:13 final size:13
Alignment explanation
Indices: 11772--11796 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
11762 CAATTCAAGT
11772 ATGTATCGATACA
1 ATGTATCGATACA
11785 ATGTATCGATAC
1 ATGTATCGATAC
11797 TGAGTGAGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:11876 original size:19 final size:20
Alignment explanation
Indices: 11852--11895 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
11842 AGTGTGTGTT
11852 GATACTAAG-AACATGTATC
1 GATACTAAGCAACATGTATC
* *
11871 GATACTAAGCAATATGTATT
1 GATACTAAGCAACATGTATC
11891 GATAC
1 GATAC
11896 ATTTGAGTGT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.30
Consensus pattern (20 bp):
GATACTAAGCAACATGTATC
Found at i:12529 original size:22 final size:21
Alignment explanation
Indices: 12485--12529 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
12475 AATTTAGTAT
* * *
12485 TCCCCTTTAATAAATTTTTTC
1 TCCCCCTTAATAAATTATCTC
12506 TCCCCCTTAATAAAGTTATCTC
1 TCCCCCTTAATAAA-TTATCTC
12528 TC
1 TC
12530 TTTTAAAACT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.24, C:0.29, G:0.02, T:0.44
Consensus pattern (21 bp):
TCCCCCTTAATAAATTATCTC
Found at i:18431 original size:3 final size:3
Alignment explanation
Indices: 18423--18468 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
18413 CGAGTCAACT
* * *
18423 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TTA TCT TCA TCG TCA T
1 TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA TCA T
18469 TGATGGTTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.28, C:0.30, G:0.02, T:0.39
Consensus pattern (3 bp):
TCA
Found at i:20153 original size:32 final size:33
Alignment explanation
Indices: 20112--20174 Score: 110
Period size: 32 Copynumber: 1.9 Consensus size: 33
20102 TGCTAGTTTT
20112 ATGTATCGATACTAAG-AACATGTATCGATATA
1 ATGTATCGATACTAAGCAACATGTATCGATATA
*
20144 ATGTATCGATACTAAGCAATATGTATCGATA
1 ATGTATCGATACTAAGCAACATGTATCGATA
20175 CATCTAGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 16 0.55
33 13 0.45
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.32
Consensus pattern (33 bp):
ATGTATCGATACTAAGCAACATGTATCGATATA
Found at i:25854 original size:10 final size:10
Alignment explanation
Indices: 25811--25881 Score: 60
Period size: 9 Copynumber: 7.2 Consensus size: 10
25801 AATTTACGTG
25811 AATAAATAATGA
1 AATAAAT-AT-A
*
25823 AATAAA-ATG
1 AATAAATATA
*
25832 ATTAAAT-TA
1 AATAAATATA
25841 AATAAATATA
1 AATAAATATA
25851 AAT-AATATA
1 AATAAATATA
*
25860 AATAATTATA
1 AATAAATATA
25870 AA-AATATATA
1 AATAA-ATATA
25880 AA
1 AA
25882 ATTAATTTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
9 23 0.47
10 20 0.41
12 6 0.12
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (10 bp):
AATAAATATA
Found at i:25885 original size:18 final size:19
Alignment explanation
Indices: 25839--25877 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
25829 ATGATTAAAT
*
25839 TAAATAAATATAAATAATA
1 TAAATAATTATAAATAATA
25858 TAAATAATTATAAA-AATA
1 TAAATAATTATAAATAATA
25876 TA
1 TA
25878 TAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 6 0.32
19 13 0.68
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
TAAATAATTATAAATAATA
Found at i:28367 original size:16 final size:16
Alignment explanation
Indices: 28314--28367 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
28304 ACTTGATATG
28314 TTTAAATTTAAAA-TA
1 TTTAAATTTAAAATTA
28329 TTTAAATTTAAAATTA
1 TTTAAATTTAAAATTA
***
28345 AAAAAATTTAAAATTA
1 TTTAAATTTAAAATTA
28361 TTTAAAT
1 TTTAAAT
28368 ATAATATAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 13 0.41
16 19 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
TTTAAATTTAAAATTA
Found at i:29093 original size:2 final size:2
Alignment explanation
Indices: 29086--29114 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
29076 CAGACCAGAC
29086 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
29115 ATTTTAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
CT
Found at i:29913 original size:16 final size:16
Alignment explanation
Indices: 29892--29927 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
29882 TTATCTTTTT
29892 ATTTAAATTATTTTAA
1 ATTTAAATTATTTTAA
29908 ATTTAAATTATTTTAA
1 ATTTAAATTATTTTAA
29924 ATTT
1 ATTT
29928 TAAAATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (16 bp):
ATTTAAATTATTTTAA
Found at i:29927 original size:7 final size:7
Alignment explanation
Indices: 29901--29943 Score: 50
Period size: 7 Copynumber: 5.9 Consensus size: 7
29891 TATTTAAATT
29901 ATTTTAA
1 ATTTTAA
*
29908 ATTTAAA
1 ATTTTAA
29915 TTATTTTAA
1 --ATTTTAA
29924 ATTTTAA
1 ATTTTAA
*
29931 AATTTAA
1 ATTTTAA
29938 ATTTTA
1 ATTTTA
29944 TTTTAGATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
7 24 0.80
9 6 0.20
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATTTTAA
Found at i:30480 original size:25 final size:25
Alignment explanation
Indices: 30459--30509 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
30449 AAGTAAATAT
* *
30459 AAATTAATGTGTTACATTTAAAAAA
1 AAATTAATCTGTTACATCTAAAAAA
*
30484 AAATTAGTCTGTTACATCTAAAAAA
1 AAATTAATCTGTTACATCTAAAAAA
30509 A
1 A
30510 TCATTACAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (25 bp):
AAATTAATCTGTTACATCTAAAAAA
Found at i:30648 original size:17 final size:16
Alignment explanation
Indices: 30626--30660 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
30616 ACCAACAATT
*
30626 TTTTATTTTTTTCTTTA
1 TTTTATTTTGTT-TTTA
30643 TTTTATTTTGTTTTTA
1 TTTTATTTTGTTTTTA
30659 TT
1 TT
30661 AGATTTAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.11, C:0.03, G:0.03, T:0.83
Consensus pattern (16 bp):
TTTTATTTTGTTTTTA
Found at i:31468 original size:13 final size:13
Alignment explanation
Indices: 31450--31474 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
31440 TGGATGTTAT
31450 ATTATTTAATTTA
1 ATTATTTAATTTA
31463 ATTATTTAATTT
1 ATTATTTAATTT
31475 TTCTAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
ATTATTTAATTTA
Found at i:33326 original size:10 final size:10
Alignment explanation
Indices: 33308--33337 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
33298 TTTTTAATTT
33308 TTTAAATTAA
1 TTTAAATTAA
*
33318 TTTATATTAA
1 TTTAAATTAA
33328 TTTAAATTAA
1 TTTAAATTAA
33338 CTCTCAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (10 bp):
TTTAAATTAA
Found at i:37448 original size:37 final size:36
Alignment explanation
Indices: 37400--37489 Score: 90
Period size: 37 Copynumber: 2.4 Consensus size: 36
37390 TTATTCGGTT
* * * * *
37400 TAAAATTTTATTTTTTATTATTTTTATTTAAATTATA
1 TAAAATATTATTTTTGAATATTTATATTT-AATTAAA
*
37437 TAAAATATTATTATTGAATATTTATATTTAATTAAA
1 TAAAATATTATTTTTGAATATTTATATTTAATTAAA
37473 TAATAAATATATATTTT
1 T-A-AAATAT-TATTTT
37490 AATTTTATTT
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
36 7 0.16
37 25 0.58
38 6 0.14
39 5 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (36 bp):
TAAAATATTATTTTTGAATATTTATATTTAATTAAA
Found at i:37497 original size:36 final size:35
Alignment explanation
Indices: 37419--37501 Score: 84
Period size: 36 Copynumber: 2.3 Consensus size: 35
37409 ATTTTTTATT
*
37419 ATTTT-TATTTAAATTATATAAAATATTATTATTGA
1 ATTTTATATTT-AATTAAATAAAATATTATTATTGA
37454 ATATTTATATTTAATTAAATAATAAATATATATT-TT-A
1 AT-TTTATATTTAATTAAAT-A-AAATAT-TATTATTGA
37491 ATTTTAT-TTTA
1 ATTTTATATTTA
37502 TGATAAAATA
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
35 6 0.14
36 15 0.36
37 9 0.21
38 8 0.19
39 4 0.10
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.55
Consensus pattern (35 bp):
ATTTTATATTTAATTAAATAAAATATTATTATTGA
Found at i:37526 original size:18 final size:19
Alignment explanation
Indices: 37500--37538 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37490 AATTTTATTT
*
37500 TATGAT-AAAATATTTTGA
1 TATGATAAAAATATTTCGA
*
37518 TATGTTAAAAATATTTCGA
1 TATGATAAAAATATTTCGA
37537 TA
1 TA
37539 GTATGTGCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.44, C:0.03, G:0.10, T:0.44
Consensus pattern (19 bp):
TATGATAAAAATATTTCGA
Found at i:39942 original size:13 final size:13
Alignment explanation
Indices: 39924--39953 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
39914 TTGTTGAGTA
39924 AGTTCATGATTTT
1 AGTTCATGATTTT
39937 AGTTCATGATTTT
1 AGTTCATGATTTT
39950 AGTT
1 AGTT
39954 ATATATGTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.17, T:0.53
Consensus pattern (13 bp):
AGTTCATGATTTT
Found at i:40585 original size:20 final size:20
Alignment explanation
Indices: 40560--40626 Score: 57
Period size: 20 Copynumber: 3.4 Consensus size: 20
40550 GAATTATATC
40560 GATACATTTTTCAATGTATT
1 GATACATTTTTCAATGTATT
****
40580 GATACA-TAAGAAAT-TATAT
1 GATACATTTTTCAATGTAT-T
*
40599 CGATACATTTTTCAATGTATC
1 -GATACATTTTTCAATGTATT
40620 GATACAT
1 GATACAT
40627 AAGAAATTAT
Statistics
Matches: 34, Mismatches: 9, Indels: 8
0.67 0.18 0.16
Matches are distributed among these distances:
18 3 0.09
19 5 0.15
20 19 0.56
21 4 0.12
22 3 0.09
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.40
Consensus pattern (20 bp):
GATACATTTTTCAATGTATT
Found at i:40600 original size:40 final size:40
Alignment explanation
Indices: 40551--40647 Score: 176
Period size: 40 Copynumber: 2.4 Consensus size: 40
40541 TTCTGGAAGG
*
40551 AATTATATCGATACATTTTTCAATGTATTGATACATAAGA
1 AATTATATCGATACATTTTTCAATGTATCGATACATAAGA
40591 AATTATATCGATACATTTTTCAATGTATCGATACATAAGA
1 AATTATATCGATACATTTTTCAATGTATCGATACATAAGA
*
40631 AATTATATTGATACATT
1 AATTATATCGATACATT
40648 CTCATTCTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.40
Consensus pattern (40 bp):
AATTATATCGATACATTTTTCAATGTATCGATACATAAGA
Found at i:40643 original size:20 final size:20
Alignment explanation
Indices: 40580--40646 Score: 64
Period size: 20 Copynumber: 3.4 Consensus size: 20
40570 TCAATGTATT
40580 GATACATAAGAAATTATATC
1 GATACATAAGAAATTATATC
**** *
40600 GATACATTTTTCAA-TGTATC
1 GATACA-TAAGAAATTATATC
*
40620 GATACATAAGAAATTATATT
1 GATACATAAGAAATTATATC
40640 GATACAT
1 GATACAT
40647 TCTCATTCTA
Statistics
Matches: 34, Mismatches: 11, Indels: 4
0.69 0.22 0.08
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.36
Consensus pattern (20 bp):
GATACATAAGAAATTATATC
Found at i:48598 original size:78 final size:79
Alignment explanation
Indices: 48491--48750 Score: 285
Period size: 79 Copynumber: 3.3 Consensus size: 79
48481 GGTGTTCCAG
* ** *
48491 AAATAAAATCGAGGTTGGAGTATCTCCTCGGAAATAACATGGTTGGAGTATCCCTGATTAT-AAA
1 AAATAAAATCGAGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCTGATTGTAAAA
48555 AATCGATATTTTGA
66 AATCGATATTTTGA
* * * *
48569 AAATGAAATTGAGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTGTAAAA
1 AAATAAAATCGAGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCTGATTGTAAAA
*
48634 AATCGATGATTTAG-
66 AATCGAT-ATTTTGA
** * * ** *
48648 AAATAAGGT-TAGGGTTGAAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCT-ATTGTGA
1 AAATAAAATCGA-GGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTAT-CCCTGATTGTAA
* * *
48711 AAAATTGGTGTTTTGA
64 AAAATCGATATTTTGA
*
48727 AAATAAAATCGAAGTTGGAGTATC
1 AAATAAAATCGAGGTTGGAGTATC
48751 TCCGATTGTG
Statistics
Matches: 148, Mismatches: 28, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
78 58 0.39
79 81 0.55
80 9 0.06
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (79 bp):
AAATAAAATCGAGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCTGATTGTAAAA
AATCGATATTTTGA
Found at i:48759 original size:51 final size:50
Alignment explanation
Indices: 48689--48815 Score: 157
Period size: 51 Copynumber: 2.5 Consensus size: 50
48679 AAATAACGGG
* * *
48689 GTTGGAGTATCCCCTATTGTGAAAAATTGGTGTTTT-GAAAATAAAATCGAA
1 GTTGGAGTAT-CCCAATTGTGAAAAATTGGTATTTTAG-AAATAAAACCGAA
* **
48740 GTTGGAGTATCTCCGATTGTGAAAAATTGGTATTTTAGAAATAAAACCGGG
1 GTTGGAGTATC-CCAATTGTGAAAAATTGGTATTTTAGAAATAAAACCGAA
48791 GTTGGAGTATCCCTAATTGTGAAAA
1 GTTGGAGTATCCC-AATTGTGAAAA
48816 TTTAAAAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
50 3 0.04
51 63 0.94
52 1 0.01
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.32
Consensus pattern (50 bp):
GTTGGAGTATCCCAATTGTGAAAAATTGGTATTTTAGAAATAAAACCGAA
Found at i:51123 original size:13 final size:13
Alignment explanation
Indices: 51105--51133 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
51095 AAAATGCCTG
51105 AATGTATCGATAC
1 AATGTATCGATAC
51118 AATGTATCGATAC
1 AATGTATCGATAC
51131 AAT
1 AAT
51134 AAGCAATGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:51142 original size:20 final size:18
Alignment explanation
Indices: 51117--51171 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 18
51107 TGTATCGATA
51117 CAATGTATCGATACAATAAG
1 CAATGTATCGATACAAT--G
51137 CAATGTATCGATACAATG
1 CAATGTATCGATACAATG
51155 CAAAATGTATCGATACA
1 C--AATGTATCGATACA
51172 TCTAGGTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.06
20 31 0.94
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.25
Consensus pattern (18 bp):
CAATGTATCGATACAATG
Found at i:55051 original size:20 final size:20
Alignment explanation
Indices: 55004--55078 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
54994 AAAAAGACAT
*
55004 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
55023 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
55044 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
55064 AATGTATCGATACAT
1 AATGTATCGATACAT
55079 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:55072 original size:40 final size:39
Alignment explanation
Indices: 55001--55078 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
54991 GTTAAAAAGA
* *
55001 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
55040 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
55079 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:55568 original size:45 final size:46
Alignment explanation
Indices: 55451--55575 Score: 144
Period size: 49 Copynumber: 2.7 Consensus size: 46
55441 GAGATGAGAG
** *
55451 AAGTGCCAATGTGCCAATTCAAAGCCAGCGACATTGGGCTAAGGGAA
1 AAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAA-GGAA
* *
55498 AAGTGGACCAATGTGCTGACTCAAGGCCAGCGACATTGGGCTTA-GAA
1 AAGT-G-CCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGAA
* * *
55545 AGGTGCCAATATGCTGATTCAAGGCTAGCGA
1 AAGTGCCAATGTGCTGATTCAAGGCCAGCGA
55576 TATCGGACTT
Statistics
Matches: 67, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
45 23 0.34
46 1 0.01
47 10 0.15
48 1 0.01
49 32 0.48
ACGTcount: A:0.31, C:0.21, G:0.29, T:0.19
Consensus pattern (46 bp):
AAGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGGCTAAGGAA
Found at i:55661 original size:32 final size:32
Alignment explanation
Indices: 55606--56435 Score: 1171
Period size: 32 Copynumber: 25.9 Consensus size: 32
55596 AAAATGGTGA
* *
55606 TTTGAAA-AGGGTTGCCACTGACTTGCGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
*
55638 TTTTAAATAGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
**
55670 TTTGAAA-AGGGTTGCCACTAACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
* *
55702 TTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
* * *
55734 TTTGGAATGGGTAGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
*
55766 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
* * *
55798 TTTTAAA-AGGGTTTCCACCAACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
*
55830 TTTGAAA-AGGGTTTCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
* *
55862 TTTGGAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
*
55894 TTTGAAA-AGGGTTACCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
55926 TTTGAAA-ATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
* *
55958 TTTGAAATGGGTTGCCACCGACTTTTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
*
55990 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
56022 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
* *
56054 TTTGAAATGGGTTGCTACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
* * *
56086 TTTGGAATGGGTTGCCATCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
56118 TTTGAAA-ATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
56150 TTTGAAA-ATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
*
56182 TTTGAAA-ATTGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
* *
56214 TTTGAAATGGGTTGCCACCGACTTTTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
*
56246 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
56278 TTTGAAA-ATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
56310 TTTGAAA-ATGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
*
56342 TTTGAAA-ATTGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATA-GGTTGCCACCGACTTGTGTGGGC
*
56374 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
*
56406 TTTGAAATGGGTTGCCACCGACTTGTGTGG
1 TTTGAAATAGGTTGCCACCGACTTGTGTGG
56436 ATTTTAAAAG
Statistics
Matches: 737, Mismatches: 50, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
31 1 0.00
32 735 1.00
33 1 0.00
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (32 bp):
TTTGAAATAGGTTGCCACCGACTTGTGTGGGC
Found at i:55715 original size:64 final size:64
Alignment explanation
Indices: 55606--56435 Score: 1297
Period size: 64 Copynumber: 13.0 Consensus size: 64
55596 AAAATGGTGA
* * * *
55606 TTTGAAAAGGGTTGCCACTGACTTGCGTGGGCTTTTAAATAGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
** *
55670 TTTGAAAAGGGTTGCCACTAACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTATGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
55734 TTTGGAATGGGTAGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * * *
55798 TTTTAAAAGGGTTTCCACCAACTTGTGTGGGCTTTGAAAAGGGTTTCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
55862 TTTGGAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAGGGTTACCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
55926 TTTGAAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTTTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
55990 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATAGGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * *
56054 TTTGAAATGGGTTGCTACCGACTTGTGTGGGCTTTGGAATGGGTTGCCATCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
56118 TTTGAAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAAAT-GGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
** *
56182 TTTGAAAATTGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTTTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
56246 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAAAT-GGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
* *
56310 TTTGAAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAAAT-TGTTGCCACCGACTTGTGTGGGC
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
*
56374 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
1 TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
56436 ATTTTAAAAG
Statistics
Matches: 706, Mismatches: 56, Indels: 8
0.92 0.07 0.01
Matches are distributed among these distances:
63 8 0.01
64 691 0.98
65 7 0.01
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (64 bp):
TTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:55770 original size:96 final size:96
Alignment explanation
Indices: 55606--56435 Score: 1296
Period size: 96 Copynumber: 8.6 Consensus size: 96
55596 AAAATGGTGA
* * * * *
55606 TTTGAAAAGGGTTGCCACTGACTTGCGTGGGCTTTTAAATAGGTTGCCACCGACTTGTGTGGGCT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCT
* **
55671 TTGAAAAGGGTTGCCACTAACTTGTGTGGGC
66 TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * *
55702 TTTGAAATGGGTTGCCACCGACTTATGTGGGCTTTGGAATGGGTAGCCACCGACTTGTGTGGGCT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCT
55767 TTGAAATGGGTTGCCACCGACTTGTGTGGGC
66 TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* * * * * *
55798 TTTTAAAAGGGTTTCCACCAACTTGTGTGGGCTTTGAAAAGGGTTTCCACCGACTTGTGTGGGCT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCT
*
55863 TTGGAATGGGTTGCCACCGACTTGTGTGGGC
66 TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
55894 TTTGAAAAGGGTTACCACCGACTTGTGTGGGCTTTGAAAAT-GGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
*
55958 TTTGAAATGGGTTGCCACCGACTTTTGTGGGC
65 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
*
55990 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATAGGTTGCCACCGACTTGTGTGGGCT
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCT
*
56055 TTGAAATGGGTTGCTACCGACTTGTGTGGGC
66 TTGAAATGGGTTGCCACCGACTTGTGTGGGC
* *
56086 TTTGGAATGGGTTGCCATCGACTTGTGTGGGCTTTGAAAAT-GGTTGCCACCGACTTGTGTGGGC
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
56150 TTTGAAAAT-GGTTGCCACCGACTTGTGTGGGC
65 TTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
* *
56182 TTTGAAAAT-TGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTTTGTGGGC
1 TTTG-AAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGC
56246 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
65 TTTGAAATGGGTTGCCACCGACTTGTGTGGGC
56278 TTTGAAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAAAT-GGTTGCCACCGACTTGTGTGGG
1 TTTG-AAATGGGTTGCCACCGACTTGTGTGGGCTTTG-AAATGGGTTGCCACCGACTTGTGTGGG
*
56341 CTTTGAAAAT-TGTTGCCACCGACTTGTGTGGGC
64 CTTTG-AAATGGGTTGCCACCGACTTGTGTGGGC
56374 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
1 TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGG
56436 ATTTTAAAAG
Statistics
Matches: 681, Mismatches: 42, Indels: 22
0.91 0.06 0.03
Matches are distributed among these distances:
95 20 0.03
96 639 0.94
97 22 0.03
ACGTcount: A:0.18, C:0.18, G:0.32, T:0.32
Consensus pattern (96 bp):
TTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCT
TTGAAATGGGTTGCCACCGACTTGTGTGGGC
Found at i:56505 original size:27 final size:27
Alignment explanation
Indices: 56439--57707 Score: 1795
Period size: 27 Copynumber: 47.3 Consensus size: 27
56429 TGTGTGGATT
* *
56439 TTAAAAGAGTGCCACGGAGTTGTGGATT
1 TTAAAAGGGTGCCACGGAGTTGTGGA-C
*
56467 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
56494 TTAAAAAGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56521 TTAAAAGGGATGCTACGGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
56549 TT---A---TGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
56570 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
56597 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56624 TTAAAAGGGTGCCACGGAGTTGTAGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
56651 TTAAAAGGATGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56678 TTAAAAGGGATGCCACGGAGTTGTGTAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
56706 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
56733 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56760 -TAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
56786 TTAAAAGAGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
** * *
56813 TTAAAAGATATGCCATGGAGTTATGGAC
1 TTAAAAG-GGTGCCACGGAGTTGTGGAC
56841 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56868 TTAAAAGGGTGCCACGGAGTTGTGGTC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
56895 TTAAAAGGGATGCCACAGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
56923 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
56950 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
** *
56977 TTAAAAGAATGCCACGGAGTTGTAGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
57004 TTTAAAAGGATGCCACGAAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
57032 TT---A---TGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
57053 TTAAAAGGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
*
57081 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57108 TTAAAAGGTTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57135 TTAAAAGGGTTCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
57162 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
**
57189 TTAAAAGAATGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
57216 TTTAAAAGGATGCCACGAAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
57244 TT---A---TGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57265 TTAAAAGGGTGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57292 TTAAAATGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57319 TTAAAAGGGATGCCACGAAGTTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
*
57347 TTAAATGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
57374 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57401 TTTAAAAGGGTGTCACGGAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
** *
57429 TTAAAAGAATGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
57456 TTAAAAGGGTGCCAC-GAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
57482 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
57509 TAAAAAGGGTGCCACAGAGTTGTAGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
** *
57536 TTTAAAAGGGTGCCACAAAGTTATGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57564 TTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* * * *
57591 TTAAAATAGATGCCACAGAGTTATGGAC
1 TTAAAA-GGGTGCCACGGAGTTGTGGAC
*
57619 TTAAAAGGGTGCCACGGAGTTGTGGAT
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
* *
57646 TTAAAAGGGATGCCACGAAATTGTGGAC
1 TTAAAAGGG-TGCCACGGAGTTGTGGAC
57674 TTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57701 TTTAAAG
1 TTAAAAG
57708 AGGTCACAGT
Statistics
Matches: 1120, Mismatches: 89, Indels: 65
0.88 0.07 0.05
Matches are distributed among these distances:
21 57 0.05
24 5 0.00
25 1 0.00
26 51 0.05
27 694 0.62
28 312 0.28
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (27 bp):
TTAAAAGGGTGCCACGGAGTTGTGGAC
Found at i:56506 original size:55 final size:54
Alignment explanation
Indices: 56439--57707 Score: 1795
Period size: 55 Copynumber: 23.6 Consensus size: 54
56429 TGTGTGGATT
* * *
56439 TTAAAAGAGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
56494 TTAAAAAGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCTACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
56549 TT---A---TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
*
56597 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTAGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
56651 TTAAAAGGATGCCACGAAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGTAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
56706 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * *
56760 -TAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
** * *
56813 TTAAAAGATATGCCATGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAG-GGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* *
56868 TTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGATGCCACAGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
56923 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
** * * *
56977 TTAAAAGAATGCCACGGAGTTGTAGACTTTAAAAGGATGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC
57032 TT---A---TGCCACGGAGTTGTGGACTTAAAAGGGATGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
* *
57081 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGTTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
*
57135 TTAAAAGGGTTCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
** * *
57189 TTAAAAGAATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC
*
57244 TT---A---TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* *
57292 TTAAAATGGTGCCACGGAGTTGTGGACTTAAAAGGGATGCCACGAAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
*
57347 TTAAATGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* ** *
57401 TTTAAAAGGGTGTCACGGAGTTGTGGACTTAAAAGAATGCCACAGAGTTGTGGAC
1 -TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
57456 TTAAAAGGGTGCCAC-GAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
* * * ** *
57509 TAAAAAGGGTGCCACAGAGTTGTAGACTTTAAAAGGGTGCCACAAAGTTATGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGTGCCACGGAGTTGTGGAC
* * * * *
57564 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAATAGATGCCACAGAGTTATGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA-GGGTGCCACGGAGTTGTGGAC
* * *
57619 TTAAAAGGGTGCCACGGAGTTGTGGATTTAAAAGGGATGCCACGAAATTGTGGAC
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TGCCACGGAGTTGTGGAC
*
57674 TTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
57708 AGGTCACAGT
Statistics
Matches: 1097, Mismatches: 85, Indels: 64
0.88 0.07 0.05
Matches are distributed among these distances:
48 55 0.05
49 80 0.07
51 2 0.00
52 4 0.00
53 99 0.09
54 343 0.31
55 514 0.47
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (54 bp):
TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC
Found at i:56727 original size:82 final size:81
Alignment explanation
Indices: 56439--57707 Score: 1795
Period size: 82 Copynumber: 15.8 Consensus size: 81
56429 TGTGTGGATT
* * * *
56439 TTAAAAGAGTGCCACGGAGTTGTGGATTTTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAAGGT
1 TTAAAAGGGTGCCACGGAGTTGTGGA-CTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
*
56504 GCCACGGAGTTGTGGTC
65 GCCACGGAGTTGTGGAC
*
56521 TTAAAAGGGATGCTACGGAGTTGTGGACTT---A---TGCCACGGAGTTGTGGACTTAAAAGGGT
1 TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
56580 GCCACGGAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
* *
56597 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTAGACTTAAAAGGATG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
*
56662 CCACGAAGTTGTGGAC
66 CCACGGAGTTGTGGAC
*
56678 TTAAAAGGGATGCCACGGAGTTGTGTACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
1 TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
56743 GCCACGGAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
* * * **
56760 -TAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGAGTGCCACAGAGTTGTGGACTTAAAAGATAT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG-GGT
* *
56824 GCCATGGAGTTATGGAC
65 GCCACGGAGTTGTGGAC
*
56841 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGTCTTAAAAGGGAT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-T
*
56906 GCCACAGAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
**
56923 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAATG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
*
56988 CCACGGAGTTGTAGAC
66 CCACGGAGTTGTGGAC
* *
57004 TTTAAAAGGATGCCACGAAGTTGTGGACTT---A---TGCCACGGAGTTGTGGACTTAAAAGGGA
1 -TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-
57063 TGCCACGGAGTTGTGGAC
64 TGCCACGGAGTTGTGGAC
* * *
57081 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAAGGTTGCCACGGAGTTGTGGACTTAAAAGGGTT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
57146 CCACGGAGTTGTGGAC
66 CCACGGAGTTGTGGAC
** *
57162 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGAATGCCACGGAGTTGTGGACTTTAAAAGGAT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGT
*
57227 GCCACGAAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
* *
57244 TT---A---TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGAAGTTGTGGACTTAAAATGGTG
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
57303 CCACGGAGTTGTGGAC
66 CCACGGAGTTGTGGAC
* *
57319 TTAAAAGGGATGCCACGAAGTTGTGGACTTAAATGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
1 TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
57384 GCCACGGAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
* ** *
57401 TTTAAAAGGGTGTCACGGAGTTGTGGACTTAAAAGAATGCCACAGAGTTGTGGACTTAAAAGGGT
1 -TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGT
57466 GCCAC-GAGTTGTGGAC
65 GCCACGGAGTTGTGGAC
* * *
57482 TTAAAAGGGTGCCACGGAGTTGTGGACTAAAAAGGGTGCCACAGAGTTGTAGACTTTAAAAGGGT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGAC-TTAAAAGGGT
** *
57547 GCCACAAAGTTATGGAC
65 GCCACGGAGTTGTGGAC
* * * * *
57564 TTAAAAGGGTGCCACAGAGTTGTGGACTTAAAATAGATGCCACAGAGTTATGGACTTAAAAGGGT
1 TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAA-GGGTGCCACGGAGTTGTGGACTTAAAAGGGT
*
57629 GCCACGGAGTTGTGGAT
65 GCCACGGAGTTGTGGAC
* * *
57646 TTAAAAGGGATGCCACGAAATTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTAAAG
1 TTAAAAGGG-TGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAG
57708 AGGTCACAGT
Statistics
Matches: 1063, Mismatches: 92, Indels: 64
0.87 0.08 0.05
Matches are distributed among these distances:
75 45 0.04
76 144 0.14
77 17 0.02
78 2 0.00
79 4 0.00
80 97 0.09
81 185 0.17
82 506 0.48
83 63 0.06
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (81 bp):
TTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTG
CCACGGAGTTGTGGAC
Found at i:57039 original size:21 final size:21
Alignment explanation
Indices: 57013--57055 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
57003 CTTTAAAAGG
57013 ATGCCACGAAGTTGTGGACTT
1 ATGCCACGAAGTTGTGGACTT
*
57034 ATGCCACGGAGTTGTGGACTT
1 ATGCCACGAAGTTGTGGACTT
57055 A
1 A
57056 AAAGGGATGC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (21 bp):
ATGCCACGAAGTTGTGGACTT
Found at i:57251 original size:21 final size:21
Alignment explanation
Indices: 57225--57294 Score: 77
Period size: 21 Copynumber: 3.0 Consensus size: 21
57215 CTTTAAAAGG
57225 ATGCCACGAAGTTGTGGACTT
1 ATGCCACGAAGTTGTGGACTT
*
57246 ATGCCACGGAGTTGTGGACTT
1 ATGCCACGAAGTTGTGGACTT
57267 AAAAGGGTGCCACGAAGTTGTGGACTT
1 ---A---TGCCACGAAGTTGTGGACTT
57294 A
1 A
57295 AAATGGTGCC
Statistics
Matches: 41, Mismatches: 2, Indels: 9
0.79 0.04 0.17
Matches are distributed among these distances:
21 20 0.49
24 2 0.05
27 19 0.46
ACGTcount: A:0.26, C:0.17, G:0.31, T:0.26
Consensus pattern (21 bp):
ATGCCACGAAGTTGTGGACTT
Found at i:58740 original size:12 final size:12
Alignment explanation
Indices: 58723--58756 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
58713 AGGGTGAAAA
58723 GGTTTTTTTTTT
1 GGTTTTTTTTTT
58735 GGTTTTTTTTTT
1 GGTTTTTTTTTT
*
58747 TGTTTTTTTT
1 GGTTTTTTTT
58757 AGGATTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (12 bp):
GGTTTTTTTTTT
Found at i:62826 original size:9 final size:9
Alignment explanation
Indices: 62812--62836 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
62802 AAATAATGAT
62812 CGAAACCGA
1 CGAAACCGA
62821 CGAAACCGA
1 CGAAACCGA
62830 CGAAACC
1 CGAAACC
62837 AATGACCGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.36, G:0.20, T:0.00
Consensus pattern (9 bp):
CGAAACCGA
Found at i:66200 original size:20 final size:20
Alignment explanation
Indices: 66153--66227 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
66143 AAAAAGACAT
*
66153 AATGTATCGATACATT-GTA
1 AATGTATCGATACATTCATA
*
66172 GAATATATCGATACATTCATA
1 -AATGTATCGATACATTCATA
* * * *
66193 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTCATA
66213 AATGTATCGATACAT
1 AATGTATCGATACAT
66228 CAAGGTAAAA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
20 43 0.96
21 2 0.04
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCATA
Found at i:66221 original size:40 final size:39
Alignment explanation
Indices: 66150--66227 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
66140 GTTAAAAAGA
* *
66150 CATAATGTATCGATACATTGTAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
66189 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
66228 CAAGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.35
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:68590 original size:15 final size:15
Alignment explanation
Indices: 68552--68593 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
68542 TTATGTTAAC
*
68552 TAAAAATTTAT-ATT
1 TAAAAATTTATAATA
*
68566 TAATATATTTATAATA
1 TAA-AAATTTATAATA
68582 TAAAAATTTATA
1 TAAAAATTTATA
68594 TATTATCACG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
14 3 0.13
15 15 0.65
16 5 0.22
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
TAAAAATTTATAATA
Found at i:70453 original size:31 final size:31
Alignment explanation
Indices: 70401--70459 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
70391 AATATATAAA
* *
70401 TATGTTAAAATTTAATAAAATAAATTATCAT
1 TATGTAAAAAATTAATAAAATAAATTATCAT
*
70432 TATGTAAAAAATT-ATATAAATAATTTAT
1 TATGTAAAAAATTAATA-AAATAAATTAT
70460 AATATTTTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 3 0.12
31 21 0.88
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (31 bp):
TATGTAAAAAATTAATAAAATAAATTATCAT
Found at i:72124 original size:2 final size:2
Alignment explanation
Indices: 72117--72166 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
72107 CACGAATCTT
72117 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
72159 TA TA TA TA
1 TA TA TA TA
72167 AAATATTTAG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:72906 original size:24 final size:24
Alignment explanation
Indices: 72854--72914 Score: 63
Period size: 24 Copynumber: 2.6 Consensus size: 24
72844 TTATTATAGT
* *
72854 ATTTTCAA-TAAAAATATCGTGAA
1 ATTTTAAATTAAAAATATAGTGAA
* *
72877 ATTTTAATTTAAAAATATTAGTGAT
1 ATTTTAAATTAAAAATA-TAGTGAA
72902 A-TTTAAATTAAAA
1 ATTTTAAATTAAAA
72915 TGTGTTATAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
23 6 0.19
24 19 0.61
25 6 0.19
ACGTcount: A:0.49, C:0.03, G:0.07, T:0.41
Consensus pattern (24 bp):
ATTTTAAATTAAAAATATAGTGAA
Found at i:74129 original size:12 final size:13
Alignment explanation
Indices: 74112--74140 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
74102 TAATTCAATT
74112 AAAACAAAAAAA-
1 AAAACAAAAAAAC
74124 AAAACAAAAAAAC
1 AAAACAAAAAAAC
74137 AAAA
1 AAAA
74141 ATGAGAGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.90, C:0.10, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAACAAAAAAAC
Found at i:77038 original size:21 final size:21
Alignment explanation
Indices: 76988--77038 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
76978 ATTAAATATA
76988 AAATAA-TAATTAAAATAAAT
1 AAATAATTAATTAAAATAAAT
* * *
77008 -ATTAATTTAATTAATATTAAT
1 AAATAA-TTAATTAAAATAAAT
77029 AAATAATTAA
1 AAATAATTAA
77039 ATTTAATAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
19 4 0.17
21 16 0.67
22 4 0.17
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AAATAATTAATTAAAATAAAT
Found at i:77041 original size:27 final size:25
Alignment explanation
Indices: 77001--77056 Score: 78
Period size: 27 Copynumber: 2.2 Consensus size: 25
76991 TAATAATTAA
77001 AATAAATATTAATTTAATTAATA-TT
1 AATAAATATTAATTTAA-TAATATTT
77026 AATAAATAATTAAATTTAATAATATTT
1 AATAAAT-ATT-AATTTAATAATATTT
77053 AATA
1 AATA
77057 TAAAATATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
25 7 0.25
26 8 0.29
27 13 0.46
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (25 bp):
AATAAATATTAATTTAATAATATTT
Found at i:77050 original size:41 final size:41
Alignment explanation
Indices: 76956--77058 Score: 99
Period size: 38 Copynumber: 2.6 Consensus size: 41
76946 AATTATTTTT
* *
76956 TTAAATTTAATAAAAATAATATATTAAATATAAAATAATAA
1 TTAAATTTAATAATATTAATATATTAAATATAAAATAATAA
* * *
76997 TTAAA-AT-A-AATATTAATTTAATT-AATAT-TAATAAATAA
1 TTAAATTTAATAATATTAATAT-ATTAAATATAAAAT-AATAA
77035 TTAAATTTAATAATATTTAATATA
1 TTAAATTTAATAATA-TTAATATA
77059 AAATATCAAA
Statistics
Matches: 49, Mismatches: 7, Indels: 12
0.72 0.10 0.18
Matches are distributed among these distances:
37 3 0.06
38 23 0.47
39 5 0.10
40 2 0.04
41 10 0.20
42 6 0.12
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (41 bp):
TTAAATTTAATAATATTAATATATTAAATATAAAATAATAA
Found at i:77063 original size:17 final size:17
Alignment explanation
Indices: 76960--77063 Score: 61
Period size: 17 Copynumber: 5.9 Consensus size: 17
76950 ATTTTTTTAA
76960 ATTTAATA-AAAATAAT
1 ATTTAATATAAAATAAT
76976 ATATTAAATATAAAATAAT
1 AT-TT-AATATAAAATAAT
* * *
76995 AATTAAAAT-AAATATT
1 ATTTAATATAAAATAAT
*
77011 AATTTAATTAATATTAATAAAT
1 -ATTTAA-T-ATA-AAAT-AAT
* **
77033 AATTAA-ATTTAATAAT
1 ATTTAATATAAAATAAT
77049 ATTTAATATAAAATA
1 ATTTAATATAAAATA
77064 TCAAACGTAT
Statistics
Matches: 66, Mismatches: 12, Indels: 19
0.68 0.12 0.20
Matches are distributed among these distances:
16 16 0.24
17 21 0.32
18 8 0.12
19 11 0.17
21 8 0.12
22 2 0.03
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTTAATATAAAATAAT
Found at i:77961 original size:29 final size:29
Alignment explanation
Indices: 77916--77972 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
77906 TTTATATTTT
77916 AAAATATATTTTATAATTAA-AATTAAATA
1 AAAATATATTTTATAATTAATAA-TAAATA
77945 AAAATAT-TTTTATTAATTAATAATAAAT
1 AAAATATATTTTA-TAATTAATAATAAAT
77973 TCGTACTACC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 5 0.19
29 19 0.73
30 2 0.08
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (29 bp):
AAAATATATTTTATAATTAATAATAAATA
Found at i:80230 original size:35 final size:34
Alignment explanation
Indices: 80184--80353 Score: 194
Period size: 35 Copynumber: 5.1 Consensus size: 34
80174 AAATGAAGGC
80184 ATGGGCATGGAATAAAAAAATGAAGGCATAATATG
1 ATGGGCATGGAATAAAAAAATGAAGGCATAA-ATG
* *
80219 ATGGGCATGGAATATAAAAATGAAGGCATGGAATG
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AAATG
* *
80254 ATGGGTATGGAATATAAAAATGAAGGC-------
1 ATGGGCATGGAATAAAAAAATGAAGGCATAAATG
80281 ATGGGCATGGAATAAAAAAATGAAGGCATAATATG
1 ATGGGCATGGAATAAAAAAATGAAGGCATAA-ATG
* *
80316 ATGGGCATGGAAT-AAAAATTGAAGGCATGGAATG
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AAATG
80350 ATGG
1 ATGG
80354 ATAGAAAGGA
Statistics
Matches: 118, Mismatches: 7, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
27 25 0.21
34 21 0.18
35 71 0.60
36 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (34 bp):
ATGGGCATGGAATAAAAAAATGAAGGCATAAATG
Found at i:80285 original size:62 final size:61
Alignment explanation
Indices: 80219--80345 Score: 193
Period size: 62 Copynumber: 2.1 Consensus size: 61
80209 GCATAATATG
* * *
80219 ATGGGCATGGAATATAAAAATGAAGGCATGGA-ATGATGGGTATGGAATATAAAAATGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AATATGATGGGCATGGAATA-AAAAATGAAGGC
*
80281 ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAATTGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAAATGAAGGC
80342 ATGG
1 ATGG
80346 AATGATGGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
61 16 0.27
62 44 0.73
ACGTcount: A:0.44, C:0.06, G:0.30, T:0.20
Consensus pattern (61 bp):
ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAAATGAAGGC
Found at i:80303 original size:97 final size:96
Alignment explanation
Indices: 80151--80353 Score: 379
Period size: 97 Copynumber: 2.1 Consensus size: 96
80141 AAAAAAACAC
80151 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
1 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
80216 ATGATGGGCATGGAATATAAAAATGAAGGCAT
66 ATGATGGGCATGGAATA-AAAAATGAAGGCAT
*
80248 GGAATGATGGGTATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
1 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
*
80313 ATGATGGGCATGGAATAAAAATTGAAGGCAT
66 ATGATGGGCATGGAATAAAAAATGAAGGCAT
80344 GGAATGATGG
1 GGAATGATGG
80354 ATAGAAAGGA
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
96 23 0.22
97 81 0.78
ACGTcount: A:0.44, C:0.05, G:0.30, T:0.20
Consensus pattern (96 bp):
GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
ATGATGGGCATGGAATAAAAAATGAAGGCAT
Found at i:81696 original size:79 final size:79
Alignment explanation
Indices: 81563--82149 Score: 1012
Period size: 79 Copynumber: 7.4 Consensus size: 79
81553 GTTAAGTTTC
* *
81563 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
81628 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * *
81642 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
81707 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
81721 TCAATTTTTCATAATCGAGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
81786 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * *
81800 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCTAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
81865 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * *
81879 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
81944 TTATTTCTAAAACA
66 TTATTTCTAAAACA
*
81958 TCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
82023 TTATTTCTAAAACA
66 TTATTTCTAAAACA
*
82037 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
82102 TTATTTCTAAAACA
66 TTATTTCTAAAACA
*
82116 TCAATTTTTCATAATCGGGGATACTCTAACCCCG
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCG
82150 ATTTTATTTT
Statistics
Matches: 478, Mismatches: 30, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 478 1.00
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.32
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:82157 original size:51 final size:52
Alignment explanation
Indices: 82081--82201 Score: 165
Period size: 52 Copynumber: 2.3 Consensus size: 52
82071 TTATTTCCGA
* *
82081 GGGGATACTCCAACCCCGGTTTTA-TTTCTAAAACATCAATTTTT-CATAATC
1 GGGGATACTCTAACCCCGATTTTATTTTCTAAAACA-CAATTTTTCCATAATC
* * **
82132 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACTGTTTTTCCATAATC
1 GGGGATACTCTAACCCCGATTTTATTTTCTAAAACACAATTTTTCCATAATC
82184 GGGGATACTCTAACCCCG
1 GGGGATACTCTAACCCCG
82202 TTATTATCTC
Statistics
Matches: 62, Mismatches: 6, Indels: 3
0.87 0.08 0.04
Matches are distributed among these distances:
51 28 0.45
52 34 0.55
ACGTcount: A:0.26, C:0.24, G:0.15, T:0.35
Consensus pattern (52 bp):
GGGGATACTCTAACCCCGATTTTATTTTCTAAAACACAATTTTTCCATAATC
Found at i:88400 original size:61 final size:61
Alignment explanation
Indices: 88294--89490 Score: 1414
Period size: 61 Copynumber: 20.3 Consensus size: 61
88284 TTAGCCATTC
** *
88294 CAGTCCTCAAAGAGCAGGATGCCTTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACC-CT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88355 CTAGTCCTCAAAGAGCAGGACGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-CT
1 C-AGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
88416 CTAGTCCTCAAAGAGCAGGACGGCTTT-TCCTTTTAAAGCCCACACAAGTTGGTAGCACCCTTT
1 C-AGTCCTCAAAGAGCAGGA-TGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
*
88479 -AGTCCTCAAAGAGCAGGATGCCTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * *
88540 -AGTCCTCAAAGAGCAGGACGCCTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACC-CT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88599 CTAGTCCTCAAAGAGCAGGATGCCTTCGCCTTTCAAAGCCCACACAAGTTGGTGGCACCCTTT
1 C-AGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * *
88662 -AGTCCTCAAAGAGCAGGACGCCTTT-TCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88722 CAATCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88783 CAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88838 CAATCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
88899 CAGTCCTCAAAGAGCAGGA------CGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
88954 CAATCCTCAAAGAGCAGGATGTCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
89015 CAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
89070 CAATCCTCAAAGAGCAGGATGCATTT-TCCTTTTAAAGCCCACACAAATTGGTGGCACCTTT
1 CAGTCCTCAAAGAGCAGGATGC-TTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
89131 CAGTCCTCAAAGAGCAGGA-----T-GCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
89186 CAATCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGATGGTGGCA-TTTT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
89246 CCAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACA-AAGTTGGTGGCACTTTT
1 -CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * *
89301 CAATCCTCAAAGAGCAGGATGCCTTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACCATT
1 CAGTCCTCAAAGAGCAGGATG-CTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* **
89362 CAGTCCTCAAAGAGCAGGA------CGCCTTTTAAAGCCCACACAAGGTGGTGGCATTTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* *
89417 CAGTCCTCAAAGAGCAGGA------CGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTT
1 CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
89472 -AGTCCTCAAAGAGCAGGAT
1 CAGTCCTCAAAGAGCAGGAT
89491 ACTCTCTCTT
Statistics
Matches: 1010, Mismatches: 72, Indels: 114
0.84 0.06 0.10
Matches are distributed among these distances:
54 47 0.05
55 303 0.30
59 1 0.00
60 29 0.03
61 597 0.59
62 31 0.03
63 2 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (61 bp):
CAGTCCTCAAAGAGCAGGATGCTTTCGCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:88844 original size:116 final size:116
Alignment explanation
Indices: 88322--89489 Score: 1702
Period size: 116 Copynumber: 10.0 Consensus size: 116
88312 ATGCCTTTTT
** * * *
88322 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CCTCTAGTCCTCAAAGAGCAGGACG-CTTTCGCC
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AATCCTCAAAGAGCAGGATGCCTTT-TCC
*
88385 TTTTAAAGCCCACACAAGTTGGTGGCACC-CTCTAGTCCTCAAAGAGCAGGACGG
64 TTTTAAAGCCCACACAAGTTGGTGGCACCTTTC-AGTCCTCAAAGAGCAGGAC-G
* * *
88439 CTTTTCCTTTTAAAGCCCACACAAGTTGGTAGCACCCTTT-AGTCCTCAAAGAGCAGGATGCCTT
1 -----CCTTTTAAAGCCCACACAAGTTGGTGGCA-CTTTTCAATCCTCAAAGAGCAGGATGCCTT
**
88503 CGCCTTTTAAAGCCCACACAAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAGGACGCCTTCG
60 TTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGA------CG
** * **
88566 CCTTTTAAAGCCCACACAAGTTGGTGGCAC-CCTCTAGTCCTCAAAGAGCAGGATGCCTTCGCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AATCCTCAAAGAGCAGGATGCCTTTTCCT
*
88630 TTCAAAGCCCACACAAGTTGGTGGCACCCTTT-AGTCCTCAAAGAGCAGGACG
65 TTTAAAGCCCACACAAGTTGGTGGCA-CCTTTCAGTCCTCAAAGAGCAGGACG
88682 CCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTT
1 CC---T--TTT-AAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTT
88747 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
60 TTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
*
88804 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
88869 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
*
88920 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGTCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
88985 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* *
89036 CCTTTCAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCATTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
* *
89101 TTAAAGCCCACACAAATTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
89152 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
* *
89217 TTAAAGCCCACACAAGATGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGACG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACG
*
89268 CCTTTCAAAGCCCACA-AAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
*
89332 TTAAAGCCCACACAAGTTGGTGGCACCATTCAGTCCTCAAAGAGCAGGACG
66 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
* * * *
89383 CCTTTTAAAGCCCACACAAGGTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCC-TTT-C--
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
*
89444 --AAAGCCCACACAAGTTGGTGGCATCTTT-AGTCCTCAAAGAGCAGGA
66 TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGA
89490 TACTCTCTCT
Statistics
Matches: 981, Mismatches: 41, Indels: 61
0.91 0.04 0.06
Matches are distributed among these distances:
109 18 0.02
110 26 0.03
114 1 0.00
115 114 0.12
116 498 0.51
117 2 0.00
119 2 0.00
120 1 0.00
121 9 0.01
122 298 0.30
123 8 0.01
124 2 0.00
127 1 0.00
128 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (116 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAATCCTCAAAGAGCAGGATGCCTTTTCCTT
TTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACG
Found at i:89212 original size:27 final size:27
Alignment explanation
Indices: 89128--89213 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
89118 TGGTGGCACC
*
89128 TTTCAGTCCTCAAAGAGCAGGATGCCT
1 TTTCAATCCTCAAAGAGCAGGATGCCT
* * **
89155 TTTAAAGCC-CACACA-AGTTGG-TGGCACT
1 TTTCAATCCTCA-A-AGAGCAGGAT-GC-CT
89183 TTTCAATCCTCAAAGAGCAGGATGCCT
1 TTTCAATCCTCAAAGAGCAGGATGCCT
89210 TTTC
1 TTTC
89214 CTTTTAAAGC
Statistics
Matches: 43, Mismatches: 9, Indels: 14
0.65 0.14 0.21
Matches are distributed among these distances:
26 3 0.07
27 20 0.47
28 17 0.40
29 3 0.07
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.28
Consensus pattern (27 bp):
TTTCAATCCTCAAAGAGCAGGATGCCT
Found at i:89653 original size:150 final size:150
Alignment explanation
Indices: 89363--89688 Score: 400
Period size: 150 Copynumber: 2.1 Consensus size: 150
89353 GGCACCATTC
* **
89363 AGTCCTCAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGGTGGTGGCATTTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGGTGGTGGCATCCTTCAGTCCTCAAA
89428 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTAGTCCTCAAAGAGCAGGATA-
66 GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTAGTCCTCAAAGAGCAGGA-AC
89492 CTC-TCTCTTCTCTCAC-CC-TTT
130 CTCTTCTC-TC-CT-ACGCCTTTT
*
89513 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA-CCTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGGTGGTGGCATCCTTCAGTCCTCAAA
89577 GAGCAGGACGCCTTTTCCATTTTAAAGCCCACACAAGTTGGTGGCA-CTTCCTAGTCCTCAAAGA
66 GAGCAGGACGCC-TTT-C-----AAAGCCCACACAAGTTGGTGGCATCTT--TAGTCCTCAAAGA
* *
89641 GCAGG-A-C-GTTCTCTCCTTTCGCCTTTT
122 GCAGGAACCTCTTCTCTCC-TACGCCTTTT
*
89668 TGTCCTCAAAGAGCAGGACGC
1 AGTCCTCAAAGAGCAGGACGC
89689 TCTCTCCTTT
Statistics
Matches: 156, Mismatches: 7, Indels: 21
0.85 0.04 0.11
Matches are distributed among these distances:
149 25 0.16
150 50 0.32
151 1 0.01
153 2 0.01
154 5 0.03
155 32 0.21
156 23 0.15
157 18 0.12
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (150 bp):
AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGGTGGTGGCATCCTTCAGTCCTCAAA
GAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATCTTTAGTCCTCAAAGAGCAGGAACC
TCTTCTCTCCTACGCCTTTT
Found at i:89684 original size:39 final size:39
Alignment explanation
Indices: 89630--89722 Score: 168
Period size: 39 Copynumber: 2.4 Consensus size: 39
89620 GCACTTCCTA
*
89630 GTCCTCAAAGAGCAGGACGTTCTCTCCTTTCGCCTTTTT
1 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
89669 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
1 GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
*
89708 GTCCTCAAGGAGCAG
1 GTCCTCAAAGAGCAG
89723 TAAGCCTTTT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
39 52 1.00
ACGTcount: A:0.17, C:0.31, G:0.20, T:0.31
Consensus pattern (39 bp):
GTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTTTT
Found at i:89781 original size:60 final size:60
Alignment explanation
Indices: 89708--89843 Score: 175
Period size: 60 Copynumber: 2.3 Consensus size: 60
89698 TCGCCTTTTT
* * * *
89708 GTCCTCAAGGAGCAGTAAGCCTTTTCTTTT-AAAGCCCACACAAGTTGGTGACACTCTCCA
1 GTCCTCAAAGAGCAGGAAG-CTTTTCTTTTCAAAGACCACACAAGTTAGTGACACTCTCCA
* * * * *
89768 GTCCTCAAAGAGCAGGACGCTTTTCTTTTCAAAGACCACACTAGTTAGTGGCACTTTTCA
1 GTCCTCAAAGAGCAGGAAGCTTTTCTTTTCAAAGACCACACAAGTTAGTGACACTCTCCA
89828 GTCCTCAAAGAGCAGG
1 GTCCTCAAAGAGCAGG
89844 GCACACTTCT
Statistics
Matches: 66, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
59 10 0.15
60 56 0.85
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (60 bp):
GTCCTCAAAGAGCAGGAAGCTTTTCTTTTCAAAGACCACACAAGTTAGTGACACTCTCCA
Found at i:90955 original size:35 final size:34
Alignment explanation
Indices: 90909--91078 Score: 194
Period size: 35 Copynumber: 5.1 Consensus size: 34
90899 AAATGAAGGC
90909 ATGGGCATGGAATAAAAAAATGAAGGCATAATATG
1 ATGGGCATGGAATAAAAAAATGAAGGCATAA-ATG
* *
90944 ATGGGCATGGAATATAAAAATGAAGGCATGGAATG
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AAATG
* *
90979 ATGGGTATGGAATATAAAAATGAAGGC-------
1 ATGGGCATGGAATAAAAAAATGAAGGCATAAATG
91006 ATGGGCATGGAATAAAAAAATGAAGGCATAATATG
1 ATGGGCATGGAATAAAAAAATGAAGGCATAA-ATG
* *
91041 ATGGGCATGGAAT-AAAAATTGAAGGCATGGAATG
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AAATG
91075 ATGG
1 ATGG
91079 ATAGAAAGGA
Statistics
Matches: 118, Mismatches: 7, Indels: 21
0.81 0.05 0.14
Matches are distributed among these distances:
27 25 0.21
34 21 0.18
35 71 0.60
36 1 0.01
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (34 bp):
ATGGGCATGGAATAAAAAAATGAAGGCATAAATG
Found at i:91010 original size:62 final size:61
Alignment explanation
Indices: 90944--91070 Score: 193
Period size: 62 Copynumber: 2.1 Consensus size: 61
90934 GCATAATATG
* * *
90944 ATGGGCATGGAATATAAAAATGAAGGCATGGA-ATGATGGGTATGGAATATAAAAATGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGCAT-AATATGATGGGCATGGAATA-AAAAATGAAGGC
*
91006 ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAATTGAAGGC
1 ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAAATGAAGGC
91067 ATGG
1 ATGG
91071 AATGATGGAT
Statistics
Matches: 60, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
61 16 0.27
62 44 0.73
ACGTcount: A:0.44, C:0.06, G:0.30, T:0.20
Consensus pattern (61 bp):
ATGGGCATGGAATAAAAAAATGAAGGCATAATATGATGGGCATGGAATAAAAAATGAAGGC
Found at i:91028 original size:97 final size:96
Alignment explanation
Indices: 90876--91078 Score: 379
Period size: 97 Copynumber: 2.1 Consensus size: 96
90866 AAAAAAACAC
90876 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
1 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
90941 ATGATGGGCATGGAATATAAAAATGAAGGCAT
66 ATGATGGGCATGGAATA-AAAAATGAAGGCAT
*
90973 GGAATGATGGGTATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
1 GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
*
91038 ATGATGGGCATGGAATAAAAATTGAAGGCAT
66 ATGATGGGCATGGAATAAAAAATGAAGGCAT
91069 GGAATGATGG
1 GGAATGATGG
91079 ATAGAAAGGA
Statistics
Matches: 104, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
96 23 0.22
97 81 0.78
ACGTcount: A:0.44, C:0.05, G:0.30, T:0.20
Consensus pattern (96 bp):
GGAATGATGGGCATGGAATATAAAAATGAAGGCATGGGCATGGAATAAAAAAATGAAGGCATAAT
ATGATGGGCATGGAATAAAAAATGAAGGCAT
Found at i:92478 original size:79 final size:79
Alignment explanation
Indices: 92345--92931 Score: 960
Period size: 79 Copynumber: 7.4 Consensus size: 79
92335 ATTAAGTTTC
* *
92345 TCAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
*
92410 TTATTTCTAAAATA
66 TTATTTCTAAAACA
* * *
92424 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGCT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
92489 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
92503 TCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
92568 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* * * *
92582 -CTAATTTTTCATAATCGGGGATATTCCAACCCCGTTATTTTCGAGGGAATACTCAAACCCCGGT
1 TC-AATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGT
*
92646 TTTATTTCTAAAATA
65 TTTATTTCTAAAACA
* * * *
92661 TTAATTTTTCACAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCTGGCT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
92726 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
92740 TCAATTTTTCATAATCGGGGATACTCCAATCTCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
92805 TTATTTCTAAAACA
66 TTATTTCTAAAACA
* *
92819 CCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATT
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
92884 TTATTTCTAAAACA
66 TTATTTCTAAAACA
*
92898 TCAATTTTTCATAATCGGGGATACTCTAACCCCG
1 TCAATTTTTCATAATCGGGGATACTCCAACCCCG
92932 ATTTTATTTT
Statistics
Matches: 471, Mismatches: 35, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
78 1 0.00
79 470 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (79 bp):
TCAATTTTTCATAATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGGTT
TTATTTCTAAAACA
Found at i:92939 original size:51 final size:52
Alignment explanation
Indices: 92863--92983 Score: 174
Period size: 52 Copynumber: 2.3 Consensus size: 52
92853 TTATTTCCGA
*
92863 GGGGATACTCCAACCCCGATTTTA-TTTCTAAAACATCAATTTTT-CATAATC
1 GGGGATACTCTAACCCCGATTTTATTTTCTAAAACA-CAATTTTTCCATAATC
* * **
92914 GGGGATACTCTAACCCCGATTTTATTTTTTAGAACACTGTTTTTCCATAATC
1 GGGGATACTCTAACCCCGATTTTATTTTCTAAAACACAATTTTTCCATAATC
92966 GGGGATACTCTAACCCCG
1 GGGGATACTCTAACCCCG
92984 TTATTATCTT
Statistics
Matches: 63, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
51 29 0.46
52 34 0.54
ACGTcount: A:0.27, C:0.24, G:0.14, T:0.35
Consensus pattern (52 bp):
GGGGATACTCTAACCCCGATTTTATTTTCTAAAACACAATTTTTCCATAATC
Found at i:95105 original size:51 final size:51
Alignment explanation
Indices: 95025--95244 Score: 264
Period size: 51 Copynumber: 4.3 Consensus size: 51
95015 ATTTTTCATC
* * * * * *
95025 TCGGGGATACTCCAA-TCCCGGTTTCATTTCCAAAACATCAATTTTTCTTAA
1 TCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACCCATTTTCCATAA
** * *
95076 TCGGGGATACTTTAACTCTGATTTTATTTCTAAAACACCCATTTTCCATAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCCATTTTCCATAA
* *
95127 TTGGGGATACTCCAACTCCGATTTTATTTCTAAAACACCCATTTTCCATAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCCATTTTCCATAA
* * *
95178 TTGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTT-CACAA
1 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCCA-TTTTCCATAA
*
95229 TCGGGGATATTCCAAC
1 TCGGGGATACTCCAAC
95245 CCCGTTATCT
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
51 143 0.97
52 5 0.03
ACGTcount: A:0.29, C:0.25, G:0.12, T:0.35
Consensus pattern (51 bp):
TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCCATTTTCCATAA
Found at i:95429 original size:79 final size:78
Alignment explanation
Indices: 95180--95471 Score: 381
Period size: 79 Copynumber: 3.7 Consensus size: 78
95170 TTCCATAATT
* * * * * *
95180 GGGGATACTCCAACTCCGATTTTATTTCCAAAACACCGACTTTTCACAATCGGGGATATTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC-AATTTTCACAATCGGGGATACTCCAAC
*
95245 CCCGTTATCTTCGA
65 CCCGTTATTTTCGA
* * * * *
95259 GGGGACACTCCAACCCTGGTTTTATTTCTAAAACATCAATTTT-TC-ATCGGGGATTCTCTAACC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCACAATCGGGGATACTCCAACC
* *
95322 CTGTTATTTTTGA
66 CCGTTATTTTCGA
*
95335 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAAATTTTCATAATCGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATC-AATTTTCACAATCGGGGATACTCCAAC
95400 CCCGTTATTTTCGA
65 CCCGTTATTTTCGA
* * *
95414 GGGGATACTCGAACCCCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATA
1 GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATT-TTCACAATCGGGGATA
95472 TTTCAACGCC
Statistics
Matches: 183, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
76 60 0.33
77 7 0.04
78 9 0.05
79 107 0.58
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.32
Consensus pattern (78 bp):
GGGGATACTCCAACCCCGGTTTTATTTCTAAAACATCAATTTTCACAATCGGGGATACTCCAACC
CCGTTATTTTCGA
Found at i:95549 original size:28 final size:30
Alignment explanation
Indices: 95513--95589 Score: 108
Period size: 28 Copynumber: 2.7 Consensus size: 30
95503 ATTTTTCACA
* *
95513 ATCGAGGATACTCCAACCTCGTTA-TTTC-
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
95541 ATCGGGGATACTCCAACCCCGTTACTTTCG
1 ATCGGGGATACTCCAACCCCGTTACTTTCG
95571 A--GGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
95590 ACTTTATTTC
Statistics
Matches: 45, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 40 0.89
29 4 0.09
30 1 0.02
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.25
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTACTTTCG
Found at i:95621 original size:237 final size:236
Alignment explanation
Indices: 95300--95801 Score: 573
Period size: 237 Copynumber: 2.1 Consensus size: 236
95290 AACATCAATT
* * * * * ** *
95300 TTTCATCGGGGATTCTCTAACCCTGTTATTTTTGAGGGGATACTCCAACCCCGGTTTTATTTCTA
1 TTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCA
* * * *
95365 AAACATCAAATTTTCATAATCGGGGATACTCCAACCCCGTTATTTTCGA-GGGGATACTCGAACC
66 AAACATCAAATTTTCATAATCGGGGATACTCCAACCCCATGATTTTC-ATGAGGATACTCCAACC
** * * *
95429 CCGGTTTTATTTCTAAAACACCAATTCTCCACAATCGGGGATATTTCAACGCC-GATTTTATTTC
130 CCGACTTTATTTCTAAAACACCAATTCTCCACAATCGGGGACACTTCAAC-CCTG-TCTTATTTC
*
95493 CAAAACACTAATTTTTCACAATCGAGGATACTCCAACCTCGTTA
193 CAAAACACTAATTTTTCACAATCGAGGATACTCCAACCCCGTTA
95537 TTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCA
1 TTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCA
* ** * *
95602 AAATAT-TGATTTCTCATAATTGGGGATACTCCAACCCCATGATTTTCATGAGGATACTCCAATC
66 AAACATCAAATTT-TCATAATCGGGGATACTCCAACCCCATGATTTTCATGAGGATACTCCAACC
* * * * * * * *
95666 CCGACTTTATTTTTGAAACATCTATTTTCTATAATCGGGGACACTTCAACCCTTGTCTTATTTCT
130 CCGACTTTATTTCTAAAACACCAATTCTCCACAATCGGGGACACTTCAACCC-TGTCTTATTTCC
* * * * * *
95731 AAATCATTGATTTTTCACAATCGGGGATTCTCTAACCCCGTTA
194 AAAACACTAATTTTTCACAATCGAGGATACTCCAACCCCGTTA
95774 TTT--TCGAGGAGATACTCCAACCCCGTTA
1 TTTCATCG-GG-GATACTCCAACCCCGTTA
95802 TTATCTCTAA
Statistics
Matches: 222, Mismatches: 37, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
235 3 0.01
236 9 0.04
237 209 0.94
238 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (236 bp):
TTTCATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCA
AAACATCAAATTTTCATAATCGGGGATACTCCAACCCCATGATTTTCATGAGGATACTCCAACCC
CGACTTTATTTCTAAAACACCAATTCTCCACAATCGGGGACACTTCAACCCTGTCTTATTTCCAA
AACACTAATTTTTCACAATCGAGGATACTCCAACCCCGTTA
Found at i:95657 original size:107 final size:107
Alignment explanation
Indices: 95465--95668 Score: 248
Period size: 107 Copynumber: 1.9 Consensus size: 107
95455 CTCCACAATC
* * * * *
95465 GGGGATATTTCAACGCCGATTTTATTTCCAAAACACTAATTTTTCACAATCGAGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAAC
* * * *
95530 CTCGTTATTTCATCGGGGATACTCCAACCCCGTTACTTTCGA
66 CCCATGATTTCATCGAGGATACTCCAACCCCGTTACTTTCGA
* * * * * *
95572 GGGGATACTCCAACCCCGACTTTATTTCCAAAATATTGATTTCTCATAATTGGGGATACTCCAAC
1 GGGGATACTCCAACCCCGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAAC
*
95637 CCCATGATTTTCAT-GAGGATACTCCAATCCCG
66 CCCATGA-TTTCATCGAGGATACTCCAACCCCG
95669 ACTTTATTTT
Statistics
Matches: 80, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
107 74 0.93
108 6 0.08
ACGTcount: A:0.27, C:0.26, G:0.15, T:0.31
Consensus pattern (107 bp):
GGGGATACTCCAACCCCGACTTTATTTCCAAAACACTAATTTCTCACAATCGAGGATACTCCAAC
CCCATGATTTCATCGAGGATACTCCAACCCCGTTACTTTCGA
Found at i:95700 original size:79 final size:79
Alignment explanation
Indices: 95541--95717 Score: 198
Period size: 79 Copynumber: 2.2 Consensus size: 79
95531 TCGTTATTTC
* * * *
95541 ATCGGGGATACTCCAACCCCGTTACTTTCGAGGGGATACTCCAACCCCGACTTTATTTCCAAAAT
1 ATCGGGGATACTCCAACCCCATGACTTTCGAGAGGATACTCCAACCCCGACTTTATTTCCAAAAC
95606 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* * * ***
95620 ATTGGGGATACTCCAACCCCATGATTTTC-ATGAGGATACTCCAATCCCGACTTTATTTTTGAAA
1 ATCGGGGATACTCCAACCCCATGACTTTCGA-GAGGATACTCCAACCCCGACTTTATTTCCAAAA
95684 CATCT-ATTT-TCTATA
65 CAT-TGATTTCTC-ATA
* *
95699 ATCGGGGACACTTCAACCC
1 ATCGGGGATACTCCAACCC
95718 TTGTCTTATT
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
78 3 0.04
79 78 0.95
80 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCATGACTTTCGAGAGGATACTCCAACCCCGACTTTATTTCCAAAAC
ATTGATTTCTCATA
Found at i:97883 original size:4 final size:4
Alignment explanation
Indices: 97874--97908 Score: 52
Period size: 4 Copynumber: 8.2 Consensus size: 4
97864 TATTTTGAGG
97874 TATT TATT TATT TATT TATT TATT TGATT TGATT T
1 TATT TATT TATT TATT TATT TATT T-ATT T-ATT T
97909 GTTTTATCGT
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 21 0.70
5 9 0.30
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (4 bp):
TATT
Found at i:102102 original size:39 final size:39
Alignment explanation
Indices: 102048--102126 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
102038 TTGAAATTTA
102048 ATAACTAATATAATATATACTTTAAAGTTTAGGCATCAT
1 ATAACTAATATAATATATACTTTAAAGTTTAGGCATCAT
102087 ATAACTAATATAATATATACTTTAAAGTTTAGGCATCAT
1 ATAACTAATATAATATATACTTTAAAGTTTAGGCATCAT
102126 A
1 A
102127 CATGCTATTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.38
Consensus pattern (39 bp):
ATAACTAATATAATATATACTTTAAAGTTTAGGCATCAT
Found at i:106509 original size:113 final size:114
Alignment explanation
Indices: 106265--106602 Score: 552
Period size: 113 Copynumber: 3.0 Consensus size: 114
106255 TAGTACATAT
* *
106265 CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGCTATGGGTACTTTGCAGATTCCAG
1 CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGGTATGGGTACTTTGCTGATTCCAG
* * *
106330 CATACCCATGCTTCAGAGAAGAAAATGAAAGAAGATGGAAGAATAATAT
66 CATACCCATGCTTCAGAGAAGAGAATGAAAGAAGAAGGAAGAATAATAC
106379 CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGGTATGGGTACTTTGCTGATTCC-G
1 CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGGTATGGGTACTTTGCTGATTCCAG
106443 CATACCCATGCTTCAGAGAAGAGAATGAAAGAAGAAGGAAGAATAATAC
66 CATACCCATGCTTCAGAGAAGAGAATGAAAGAAGAAGGAAGAATAATAC
* **
106492 CTAGATGTACCCAACGTGTACTCGTACCGAATACATACCAGGTGCGGGTACTTTGCTGATTCCAG
1 CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGGTATGGGTACTTTGCTGATTCCAG
* * * * *
106557 CATGCCAATGCTTCAAAGAAGAGAATGAAAGAAAAAGGAAAAATAA
66 CATACCCATGCTTCAGAGAAGAGAATGAAAGAAGAAGGAAGAATAA
106603 GTTCGTTTAA
Statistics
Matches: 210, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
113 107 0.51
114 103 0.49
ACGTcount: A:0.37, C:0.20, G:0.21, T:0.21
Consensus pattern (114 bp):
CTAGATGTACCCAACGTGTACTCGAACCGAATACATACCAGGTATGGGTACTTTGCTGATTCCAG
CATACCCATGCTTCAGAGAAGAGAATGAAAGAAGAAGGAAGAATAATAC
Found at i:106843 original size:22 final size:22
Alignment explanation
Indices: 106795--106843 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
106785 TAAAGGATAA
*
106795 AATTTAATAAATTTAAAATTTT
1 AATTTAATAAATTTAAAATTAT
*
106817 AATTTAA-ATAATTTTAAATTAT
1 AATTTAATA-AATTTAAAATTAT
*
106839 GATTT
1 AATTT
106844 TATGTATATT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (22 bp):
AATTTAATAAATTTAAAATTAT
Found at i:107229 original size:2 final size:2
Alignment explanation
Indices: 107222--107278 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
107212 TTTTTGAAAT
107222 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
*
107264 TA TA TA TG TA TA TA T
1 TA TA TA TA TA TA TA T
107279 GAAGTTATAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 53 1.00
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:107542 original size:11 final size:11
Alignment explanation
Indices: 107512--107554 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
107502 CATATTTTTA
107512 TAATTAAAT-T
1 TAATTAAATAT
107522 TAATTAAAATAT
1 TAATT-AAATAT
*
107534 TAATTAAATAA
1 TAATTAAATAT
107545 TAATTTAAAT
1 TAA-TTAAAT
107555 CGAACTGCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 5 0.17
11 12 0.41
12 12 0.41
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
TAATTAAATAT
Found at i:112897 original size:14 final size:15
Alignment explanation
Indices: 112872--112900 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
112862 AATAATTTAC
112872 TATTTAAATAGTAAT
1 TATTTAAATAGTAAT
112887 TATTT-AATAGTAAT
1 TATTTAAATAGTAAT
112901 GATCAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (15 bp):
TATTTAAATAGTAAT
Found at i:113169 original size:16 final size:16
Alignment explanation
Indices: 113150--113180 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
113140 TTTAAAATCC
*
113150 AAATCATTTTGAGTTT
1 AAATAATTTTGAGTTT
113166 AAATAATTTTGAGTT
1 AAATAATTTTGAGTT
113181 CAAAAAATTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.13, T:0.48
Consensus pattern (16 bp):
AAATAATTTTGAGTTT
Found at i:113189 original size:16 final size:16
Alignment explanation
Indices: 113155--113189 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
113145 AATCCAAATC
* *
113155 ATTTTGAGTTTAAATA
1 ATTTTGAGTTCAAAAA
113171 ATTTTGAGTTCAAAAA
1 ATTTTGAGTTCAAAAA
113187 ATT
1 ATT
113190 ATTTAATTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.46
Consensus pattern (16 bp):
ATTTTGAGTTCAAAAA
Found at i:113295 original size:169 final size:169
Alignment explanation
Indices: 113013--113344 Score: 583
Period size: 169 Copynumber: 2.0 Consensus size: 169
113003 TTATTTTAGG
*
113013 AAAAAATTATTTAATTATAAATTCAATTATTTTTATTTTATTATTGAATTCAGGTTACTACAAAT
1 AAAAAATTATTTAATTACAAATTCAATTATTTTTATTTTATTATTGAATTCAGGTTACTACAAAT
* * *
113078 TTATAATCGAGTTAGTCTCAAGTTGAGTCATTCTAAGTTTGAATCAATTTAAATTTAATTCATTT
66 TTATAATCGAGTTAGTCCCAAGTTGAGTAATTCTAAGTTTGAATCAATTTAAATTTAACTCATTT
* *
113143 AAAATCCAAATCATTTTGAGTTTAAATAATTTTGAGTTC
131 AAAATCCAAATCATTTCGAGTTCAAATAATTTTGAGTTC
**
113182 AAAAAATTATTTAATTACAAATTCAATTATTTTTATTTTATTATTGAATTTTGGTTACTACAAAT
1 AAAAAATTATTTAATTACAAATTCAATTATTTTTATTTTATTATTGAATTCAGGTTACTACAAAT
*
113247 TTATAATCGAGTTAGTCCCAAGTTGAGTAATTCTAAGTTTGGATCAATTTAAATTTAACTCATTT
66 TTATAATCGAGTTAGTCCCAAGTTGAGTAATTCTAAGTTTGAATCAATTTAAATTTAACTCATTT
113312 AAAATCCAAATCATTTCGAGTTCAAATAATTTT
131 AAAATCCAAATCATTTCGAGTTCAAATAATTTT
113345 AAATTTAAAT
Statistics
Matches: 154, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
169 154 1.00
ACGTcount: A:0.37, C:0.10, G:0.09, T:0.44
Consensus pattern (169 bp):
AAAAAATTATTTAATTACAAATTCAATTATTTTTATTTTATTATTGAATTCAGGTTACTACAAAT
TTATAATCGAGTTAGTCCCAAGTTGAGTAATTCTAAGTTTGAATCAATTTAAATTTAACTCATTT
AAAATCCAAATCATTTCGAGTTCAAATAATTTTGAGTTC
Found at i:113371 original size:16 final size:16
Alignment explanation
Indices: 113335--113371 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
113325 TTTCGAGTTC
*
113335 AAATAATTTTAAATTT
1 AAATTATTTTAAATTT
113351 AAATTATTTTAAATTT
1 AAATTATTTTAAATTT
113367 AAATT
1 AAATT
113372 TTTACGAGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
AAATTATTTTAAATTT
Found at i:113419 original size:23 final size:21
Alignment explanation
Indices: 113358--113411 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 21
113348 TTTAAATTAT
*
113358 TTTAAATTTAAATTTTTACGAG
1 TTTAAATTT-AATTTTGACGAG
* *
113380 TTTAAGTTTTTAATTTTGATGAG
1 TTTAA--ATTTAATTTTGACGAG
113403 TTTAAATTT
1 TTTAAATTT
113412 GAACTTTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 15 0.58
24 3 0.12
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (21 bp):
TTTAAATTTAATTTTGACGAG
Found at i:113493 original size:3 final size:3
Alignment explanation
Indices: 113485--113533 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
113475 ACTCTTACCC
* *
113485 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA GTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
113533 T
1 T
113534 CGACTTTTCT
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:114186 original size:14 final size:13
Alignment explanation
Indices: 114153--114190 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
114143 TCGAATTAAC
114153 TTAAAT-TAAAAA
1 TTAAATATAAAAA
*
114165 TTAAATATAAAAT
1 TTAAATATAAAAA
114178 TTAAAATATAAAA
1 TT-AAATATAAAA
114191 CAATTAAACT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 6 0.26
13 7 0.30
14 10 0.43
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
TTAAATATAAAAA
Found at i:114425 original size:21 final size:18
Alignment explanation
Indices: 114382--114422 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
114372 ATAGTTTTTT
*
114382 TTAATCTTTTGATCATTA
1 TTAATCTTTTGACCATTA
114400 TTAATCTTTTGACCATTA
1 TTAATCTTTTGACCATTA
114418 TTAAT
1 TTAAT
114423 AATGATTTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.05, T:0.54
Consensus pattern (18 bp):
TTAATCTTTTGACCATTA
Found at i:114455 original size:52 final size:51
Alignment explanation
Indices: 114346--114457 Score: 138
Period size: 52 Copynumber: 2.2 Consensus size: 51
114336 AATGGTGCAT
** *
114346 GATTAATCTTTTGACCATTATTAATAATAGTTTTTTTTAATCTTTTGATCAT
1 GATTAATCTTTTGACCATTATTAATAATAGTTTTTTTTAA-CTAATGATCAA
*
114398 TATTAATCTTTTGACCATTATTAATAAT-GATTTTTTTTAA-TAATGATCAAAA
1 GATTAATCTTTTGACCATTATTAATAATAG-TTTTTTTTAACTAATGATC--AA
114450 GATTAATC
1 GATTAATC
114458 GTGCACCATT
Statistics
Matches: 52, Mismatches: 5, Indels: 6
0.83 0.08 0.10
Matches are distributed among these distances:
50 6 0.12
51 1 0.02
52 45 0.87
ACGTcount: A:0.34, C:0.09, G:0.07, T:0.50
Consensus pattern (51 bp):
GATTAATCTTTTGACCATTATTAATAATAGTTTTTTTTAACTAATGATCAA
Found at i:114646 original size:12 final size:13
Alignment explanation
Indices: 114610--114647 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
114600 AGTTTAATTG
*
114610 TTTTATATTTTAAA
1 TTTTATA-TTTAAT
114624 TTTTATATTTAAT
1 TTTTATATTTAAT
114637 TTTTA-ATTTAA
1 TTTTATATTTAA
114648 GTTAATTCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 6 0.26
13 10 0.43
14 7 0.30
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTTATATTTAAT
Found at i:115284 original size:3 final size:3
Alignment explanation
Indices: 115278--115325 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
115268 ATACTACTAC
115278 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
115326 GGGTAAGAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:115494 original size:32 final size:32
Alignment explanation
Indices: 115445--115515 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
115435 AATTAAAAAC
* * * *
115445 TTAAACTCGTAAAAATTTTAATTTAAAATTAT
1 TTAAATTCGTAAAAATTTAAATTTAAAATAAA
*
115477 TTAAATTCG-AAATAATTTAAATTTTAAATAAA
1 TTAAATTCGTAAA-AATTTAAATTTAAAATAAA
115509 TTAAATT
1 TTAAATT
115516 TAAATTAATC
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
31 3 0.09
32 30 0.91
ACGTcount: A:0.49, C:0.04, G:0.03, T:0.44
Consensus pattern (32 bp):
TTAAATTCGTAAAAATTTAAATTTAAAATAAA
Found at i:115505 original size:16 final size:16
Alignment explanation
Indices: 115454--115520 Score: 66
Period size: 16 Copynumber: 4.3 Consensus size: 16
115444 CTTAAACTCG
*
115454 TAAA-AATTTTAATTT
1 TAAATAATTTAAATTT
* * *
115469 AAAATTATTTAAATTC
1 TAAATAATTTAAATTT
*
115485 GAAATAATTTAAATTT
1 TAAATAATTTAAATTT
*
115501 TAAATAAATTAAA-TT
1 TAAATAATTTAAATTT
115516 TAAAT
1 TAAAT
115521 TAATCCAACT
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
15 10 0.24
16 32 0.76
ACGTcount: A:0.52, C:0.01, G:0.01, T:0.45
Consensus pattern (16 bp):
TAAATAATTTAAATTT
Found at i:115704 original size:2 final size:2
Alignment explanation
Indices: 115697--115725 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
115687 TCCCAAATGA
115697 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
115726 ATTATATTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:116474 original size:16 final size:16
Alignment explanation
Indices: 116432--116478 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
116422 AAAATAAATC
116432 AAATTTAAAAT-ATCTT
1 AAATTTAAAATGA-CTT
*
116448 AAACCTT-AAATGACTT
1 AAA-TTTAAAATGACTT
116464 AAATTTAAAATGACT
1 AAATTTAAAATGACT
116479 CGAATAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 2 0.08
16 21 0.81
17 3 0.12
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.36
Consensus pattern (16 bp):
AAATTTAAAATGACTT
Found at i:117820 original size:79 final size:79
Alignment explanation
Indices: 117720--117893 Score: 192
Period size: 79 Copynumber: 2.2 Consensus size: 79
117710 AATAAGACAA
* * * * *
117720 GGGTTGAAGTGTCCCCGATTAT-AGAAAAT-AGATGTTTCAAAAATAAAGTCGGGATTGAAGTAT
1 GGGTTGGAGTATCCCCAATTATGAG-AAATCA-ATATTTCAAAAATAAAGCCGGGATTGAAGTAT
*
117783 CCCCGT-GAAAATAATG
64 CCCC-TCGAAAATAACG
* * * *
117799 GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCC
1 GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTCAAAAATAAAGCCGGGATTGAAGTATCC
* *
117864 CCTCGGAAGTAACG
66 CCTCGAAAATAACG
117878 GGGTTGGAGTATCCCC
1 GGGTTGGAGTATCCCC
117894 GATGAAATAA
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.01
79 76 0.95
80 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (79 bp):
GGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTCAAAAATAAAGCCGGGATTGAAGTATCC
CCTCGAAAATAACG
Found at i:117888 original size:28 final size:28
Alignment explanation
Indices: 117848--117919 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
117838 GAAATAAAGC
** *
117848 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
117876 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
117904 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
117920 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:118021 original size:51 final size:51
Alignment explanation
Indices: 117913--118023 Score: 132
Period size: 51 Copynumber: 2.2 Consensus size: 51
117903 ACGAGGTTGG
* * * *
117913 AGTATCCTCGATTGTGAAAAATTAGTGTTTTGGAAATAAAATCAAAGTTGA
1 AGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAAAGTTCA
* * * * **
117964 AATATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCAGGGTTCA
1 AGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAAAGTTCA
118015 AGTATCCCC
1 AGTATCCCC
118024 TCAAAAATAA
Statistics
Matches: 49, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 49 1.00
ACGTcount: A:0.35, C:0.14, G:0.21, T:0.31
Consensus pattern (51 bp):
AGTATCCCCGATTGTGAAAAATTAGTGTTTTAGAAATAAAACCAAAGTTCA
Found at i:118076 original size:237 final size:237
Alignment explanation
Indices: 117634--118137 Score: 604
Period size: 237 Copynumber: 2.1 Consensus size: 237
117624 TTTTGGAGAT
* * * * *
117634 AATAACAGGGTTTGAGTATCCCCTCA-AAAATAACGGGGTTGGAGAATCCCCGATTGTGAAAAAT
1 AATAACGGGGTTGGAGTATCCCC-GATGAAATAACGAGGTTGGAGAATCCCCGATTGTGAAAAAT
* * * * *
117698 CGATGATTTAGAAATAAGACAAGGGTTGAAGTGTCCCCGATTATAGAAAATAGATGTTTCAAAAA
65 AGATGATTTAGAAATAAAACAAGAGTTGAAATATCCCCGATTATAGAAAATAGATGTTTCAAAAA
** * * * *
117763 TAAAGTCGGGATTGAAGTATCCCCGTGAAAATAATGGGGTTGGAGTATCCCCAATTATGAGAAAT
130 TAAAACCGGGATTCAAGTATCCCCGTAAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAAT
* * *
117828 CAATATTTTAGAAATAAAGCCGGGGTTGGAGTATCCCCTCGGA
195 CAATATTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAA
* * *
117871 AGTAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGTATCCTCGATTGTGAAAAATT
1 AATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGAATCCCCGATTGTGAAAAA-T
* * * * * * * * *
117936 AG-TGTTTTGGAAATAAAATCAA-AGTTGAAATATCCCCGATTGTGGAGAATTGGTGTTTTAGAA
65 AGATGATTTAGAAATAAAA-CAAGAGTTGAAATATCCCCGATTATAGAAAATAGATGTTTCAAAA
**
117999 ATAAAACCAGGG-TTCAAGTATCCCC-TCAAAAATAACGGGGTTGGAGTATCCCTGATTATGAAA
129 ATAAAACC-GGGATTCAAGTATCCCCGT-AAAAATAACGGGGTTGGAGTATCCCCAATTATGAAA
** *
118062 AATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAA
192 AATCAATATTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAA
118108 AATAACGGGGTTGGAGTATCCCCGATGAAA
1 AATAACGGGGTTGGAGTATCCCCGATGAAA
118138 AATTGATGTT
Statistics
Matches: 225, Mismatches: 37, Indels: 10
0.83 0.14 0.04
Matches are distributed among these distances:
236 2 0.01
237 215 0.96
238 8 0.04
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (237 bp):
AATAACGGGGTTGGAGTATCCCCGATGAAATAACGAGGTTGGAGAATCCCCGATTGTGAAAAATA
GATGATTTAGAAATAAAACAAGAGTTGAAATATCCCCGATTATAGAAAATAGATGTTTCAAAAAT
AAAACCGGGATTCAAGTATCCCCGTAAAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATC
AATATTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAA
Found at i:118098 original size:79 final size:79
Alignment explanation
Indices: 117966--118257 Score: 351
Period size: 79 Copynumber: 3.7 Consensus size: 79
117956 AAAGTTGAAA
* * * * * * *
117966 TATCCCCGATTGTGGAGAATTGGTGTTTTAGAAATAAAACCAGGGTTCAAGTATCCCCTCAAAAA
1 TATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAAAA
118031 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
*
118045 TATCCCTGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAAAA
1 TATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAAAA
118110 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
* * * * * *
118124 TATCCCCG---ATGAAAAATTGATGTTTTAGAAATAAAATCGAGATTGGAGTGTCCCCTCGAAGA
1 TATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAAAA
118186 TAACGGGGTTGGAG
66 TAACGGGGTTGGAG
* * * * * *
118200 TATCCCCGATTGTG-AAAAGTCAGTGTTTT-GAAAATAAAATCGGAGTTGGAGTATCCCC
1 TATCCCCGATTATGAAAAATTGA-TGTTTTAG-AAATAAAACCGGGGTTCGAGTATCCCC
118258 GATTATGGAA
Statistics
Matches: 186, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
76 70 0.38
78 7 0.04
79 109 0.59
ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27
Consensus pattern (79 bp):
TATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCGGGGTTCGAGTATCCCCTCGAAAA
TAACGGGGTTGGAG
Found at i:118253 original size:51 final size:49
Alignment explanation
Indices: 118193--118471 Score: 294
Period size: 51 Copynumber: 5.5 Consensus size: 49
118183 AGATAACGGG
* *
118193 GTTGGAGTATCCCCGATTGTGAAAAGTCAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTATGAAAA-T-GGTGTTTTGAAAATAAAATCGGA
118244 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTT-AGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTAT-GAAAAT-GGTGTTTTGA-AAATAAAATCGGA
* * * *
118295 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGGA
1 GTTGGAGTATCCCCGATTATG-AAAA-TGGTGTTTTGAAAATAAAATCGGA
* *
118346 GTTGGAGTATCCCCGATTATGGAAAATGGGTGTTTT-AGAACTAAAATCAGA
1 GTTGGAGTATCCCCGATTAT-GAAAAT-GGTGTTTTGA-AAATAAAATCGGA
* * * * *
118397 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAACCGGA
1 GTTGGAGTATCCCCGATTATG-AAAA-TGGTGTTTTGAAAATAAAATCGGA
* *
118448 ATTGGAGTATCCCCGA-GATGAAAA
1 GTTGGAGTATCCCCGATTATGAAAA
118472 ATCTAAAAAT
Statistics
Matches: 194, Mismatches: 23, Indels: 24
0.80 0.10 0.10
Matches are distributed among these distances:
49 4 0.02
50 6 0.03
51 176 0.91
52 8 0.04
ACGTcount: A:0.34, C:0.11, G:0.26, T:0.28
Consensus pattern (49 bp):
GTTGGAGTATCCCCGATTATGAAAATGGTGTTTTGAAAATAAAATCGGA
Found at i:118369 original size:102 final size:102
Alignment explanation
Indices: 118193--118463 Score: 436
Period size: 102 Copynumber: 2.7 Consensus size: 102
118183 AGATAACGGG
** * * * *
118193 GTTGGAGTATCCCCGATTGTG-AAAAGTCAGTGTTTTGAAAATAAAATCGGAGTTGGAGTATCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGA-TGTTTTGGAAATGAAATCGGAGTTGGAGTATCCC
*
118257 CGATTATGGAAAATGGGTGTTTTAGAAATAAAATCGGA
65 CGATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGA
118295 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGGAGTTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGGAGTTGGAGTATCCCC
*
118360 GATTATGGAAAATGGGTGTTTTAGAACTAAAATCAGA
66 GATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGA
* *
118397 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAACCGGAATTGGAGTATCCCC
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGGAGTTGGAGTATCCCC
118462 GA
66 GA
118464 GATGAAAAAT
Statistics
Matches: 158, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
102 152 0.96
103 6 0.04
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.29
Consensus pattern (102 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTGGAAATGAAATCGGAGTTGGAGTATCCCC
GATTATGGAAAATGGGTGTTTTAGAAATAAAATCAGA
Found at i:120850 original size:13 final size:13
Alignment explanation
Indices: 120832--120857 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
120822 ACAAAGATCG
120832 ATGTATCGATACA
1 ATGTATCGATACA
120845 ATGTATCGATACA
1 ATGTATCGATACA
120858 TCGAATAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:121906 original size:61 final size:60
Alignment explanation
Indices: 121823--122132 Score: 360
Period size: 61 Copynumber: 5.3 Consensus size: 60
121813 GTGTTTCCCA
* *
121823 CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGAAAAGGCGTCCTG
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA-AAAAGGCGTCCTG
* * *
121884 CCCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAA-GCATCCTG
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-AAAAA-AAAGGCGTCCTG
* * *
121945 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCGTCTTG
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA--AAAAGGCGTCCTG
* * * *
122006 CTCTTTGAGGAATG-AAGGTGCCACCAGCTTATATGGGCTTT-----AAAAGGCGTCCTG
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCCTG
*
122060 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTG-----AAAGGCATCCTG
1 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCCTG
122115 CTCTTTGAGGACT-AAAGG
1 CTCTTTGAGGACTGAAAGG
122133 GTGAAAGGAG
Statistics
Matches: 219, Mismatches: 23, Indels: 21
0.83 0.09 0.08
Matches are distributed among these distances:
54 29 0.13
55 48 0.22
59 4 0.02
60 25 0.11
61 106 0.48
62 7 0.03
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (60 bp):
CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAAAAAGGCGTCCTG
Found at i:122096 original size:115 final size:118
Alignment explanation
Indices: 121823--122107 Score: 398
Period size: 122 Copynumber: 2.4 Consensus size: 118
121813 GTGTTTCCCA
*
121823 CTCTTTGAGGACTGAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAA-GAAAAGGCGTCCTGCCC
1 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAAAAGGCGTCCTGCCC
* * *
121887 TTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCATCCTG
65 TTTGAGGAATGGAAGGTGCCACCAACTTATATGGGCTTT--AAAAAG--AGCATCCTG
* * *
121945 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCTTGCTCT
1 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCCT
* *
122010 TTGAGGAAT-GAAGGTGCCACCAGCTTATATGGGCTTT-AAAAG-GCGTCCTG
66 TTGAGGAATGGAAGGTGCCACCAACTTATATGGGCTTTAAAAAGAGCATCCTG
* *
122060 CTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGG
1 CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGG
122108 CATCCTGCTC
Statistics
Matches: 151, Mismatches: 11, Indels: 9
0.88 0.06 0.05
Matches are distributed among these distances:
115 53 0.35
118 5 0.03
121 29 0.19
122 64 0.42
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (118 bp):
CTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCCCT
TTGAGGAATGGAAGGTGCCACCAACTTATATGGGCTTTAAAAAGAGCATCCTG
Found at i:123216 original size:1 final size:1
Alignment explanation
Indices: 123212--123269 Score: 62
Period size: 1 Copynumber: 58.0 Consensus size: 1
123202 TTTTATTCTC
* * * * * *
123212 TTTTTTTCTTTTTGTTTTTTTGTTTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
123270 AAAAAAGAAT
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.90
Consensus pattern (1 bp):
T
Found at i:123223 original size:8 final size:8
Alignment explanation
Indices: 123220--123266 Score: 76
Period size: 8 Copynumber: 5.6 Consensus size: 8
123210 TCTTTTTTTC
123220 TTTTTGTT
1 TTTTTGTT
123228 TTTTTGTTTT
1 TTTTTG--TT
123238 TTTTTGTT
1 TTTTTGTT
123246 TTTTTGTT
1 TTTTTGTT
123254 TTTTTGTT
1 TTTTTGTT
123262 TTTTT
1 TTTTT
123267 TTTAAAAAAG
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
8 29 0.78
10 8 0.22
ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89
Consensus pattern (8 bp):
TTTTTGTT
Found at i:123241 original size:18 final size:18
Alignment explanation
Indices: 123215--123268 Score: 83
Period size: 18 Copynumber: 2.9 Consensus size: 18
123205 TATTCTCTTT
123215 TTTTCTTTTTGTTTTTTTG
1 TTTT-TTTTTGTTTTTTTG
123234 TTTTTTTTTGTTTTTTTG
1 TTTTTTTTTGTTTTTTTG
123252 TTTTTTTGTT-TTTTTTT
1 TTTTTTT-TTGTTTTTTT
123269 TAAAAAAGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
18 28 0.82
19 6 0.18
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (18 bp):
TTTTTTTTTGTTTTTTTG
Found at i:123241 original size:26 final size:25
Alignment explanation
Indices: 123212--123269 Score: 98
Period size: 26 Copynumber: 2.3 Consensus size: 25
123202 TTTTATTCTC
*
123212 TTTTTTTCTTTTTGTTTTTTTGTTT
1 TTTTTTTTTTTTTGTTTTTTTGTTT
123237 TTTTTTGTTTTTTTGTTTTTTTGTTT
1 TTTTTT-TTTTTTTGTTTTTTTGTTT
123263 TTTTTTT
1 TTTTTTT
123270 AAAAAAGAAT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.90
Consensus pattern (25 bp):
TTTTTTTTTTTTTGTTTTTTTGTTT
Found at i:131879 original size:126 final size:126
Alignment explanation
Indices: 131737--131974 Score: 341
Period size: 126 Copynumber: 1.9 Consensus size: 126
131727 CCTTATGATT
* * ***
131737 TAAACAAATATTAATCATTTTTAATCTTTTATATTTCTATGGGTATTCATAGGGGTATAAAAGAT
1 TAAACAAATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCATAAAAGTATAAAAGAT
* * ** *
131802 TTAAAAAAATTTTTGTATTTTTTTGGGTTTCCATTAAGGTACGAAATTTTTTTTTCAAATA
66 TTAAAAAAATTTTTATATCTTTGCGGGTTTCCATTAAGGTACAAAATTTTTTTTTCAAATA
* *
131863 TAAATAAATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCGTAAAAGTATAAAAGAT
1 TAAACAAATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCATAAAAGTATAAAAGAT
* * *
131928 TTCAAAAACTTTTTATATCTTTGCGGGTTTTCATTAAGGTACAAAAT
66 TTAAAAAAATTTTTATATCTTTGCGGGTTTCCATTAAGGTACAAAAT
131975 GATACTTTTT
Statistics
Matches: 97, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
126 97 1.00
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.45
Consensus pattern (126 bp):
TAAACAAATATTAATCATTTTTAATCTTTTATATTCCTATGGGTATCCATAAAAGTATAAAAGAT
TTAAAAAAATTTTTATATCTTTGCGGGTTTCCATTAAGGTACAAAATTTTTTTTTCAAATA
Found at i:142413 original size:15 final size:15
Alignment explanation
Indices: 142393--142425 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
142383 TAAAGGACAG
142393 GAGATG-ACACCTATC
1 GAGATGAACACCTA-C
142408 GAGATGAACACCTAC
1 GAGATGAACACCTAC
142423 GAG
1 GAG
142426 TCCCTTGCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.15
Consensus pattern (15 bp):
GAGATGAACACCTAC
Found at i:145188 original size:42 final size:42
Alignment explanation
Indices: 145124--145534 Score: 303
Period size: 42 Copynumber: 9.8 Consensus size: 42
145114 CTTTTTGCAA
* * * * *
145124 ACTTCTTCATCTTTCTTTTGCCCGTTGGC-CTAGACTCTGGAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTC-AGACCCAGGAG
* *
145166 ACTTCTTCATCTTTCGTCTGCCCGTCAGC-CTAAACCCAGGAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTC-AGACCCAGGAG
* * * * * *
145208 ACTTCTTCATCTTTTG-CTTGTCTGTCGGCTTAGACTCAAGAG
1 ACTTCTTCATCTTTCGTC-TGCCCGTCGGCTCAGACCCAGGAG
** * * * * *
145250 ACTTCTTCATCTTTCGTCTTTCTGTCGACTCAGACCAAAGAA
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAGGAG
* ** * * *
145292 ACTTCCTTTATCAATCGTCTGCCCATCAGCTCAGACCCGGGAG
1 ACTT-CTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAGGAG
* * **
145335 ACTTCTTCATCTTTCATCTGCCTGTCGGCTCAGACCTGGGAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAGGAG
* *
145377 AGTTCTTCA-CTTTCGTCTGCCCGTCGGCTCAGACTC-GAGAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAG-GAG
*
145418 ACTTCTTCATCTTTCGTCTGCCCATCGGCTCAGACCCTA-GAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCC-AGGAG
** * * * * * * *
145460 ACTTCTTCATCAATCGTTTTCCCGTCGGTTTAAACTCAGGGG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAGGAG
* ** * *
145502 AGTTCTTCATCCATCGTCTACCCGTCAGCTCAG
1 ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAG
145535 TCTCGGAAGA
Statistics
Matches: 291, Mismatches: 69, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
40 1 0.00
41 36 0.12
42 224 0.77
43 30 0.10
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (42 bp):
ACTTCTTCATCTTTCGTCTGCCCGTCGGCTCAGACCCAGGAG
Found at i:146858 original size:167 final size:165
Alignment explanation
Indices: 146489--147319 Score: 767
Period size: 167 Copynumber: 5.0 Consensus size: 165
146479 AAAATTTTTT
* * * * *
146489 AAATATTATCATTTATTTCATATTAAATCAGCTCTAAAAAATTAATTCATTTTCATTAGTCTTTG
1 AAATATTATCATTTATTTCATATTAAATCA-TTTTCAAAAATTAATTCATTTTCATGAGT-TTTT
* * * * * *
146554 AATTTTTTCCTTGACATTTCTC-TTTTCCTGAAATAC-GATATTTTT-TACTCCGTAAATTTTTT
64 AATTTTTTTCTTGAAACTTCCCTTTTTTCTAAAATACAG-T-TTTTTCTACTCCGTAAATTTTTT
*
146616 TGAGGGGA-GTTTCTTGGTTTTTAATTTTTAAATTTCATC
127 TG-GGGGATTTTTCTTGGTTTTTAATTTTTAAATTTCATC
* * *
146655 AAATATTATCATTTATTTCATATTAAATAAATTTTCAAAAATTAATTCATTTTCATGAATTTTTT
1 AAATATTATCATTTATTTCATATTAAAT-CATTTTCAAAAATTAATTCATTTTCATGAGTTTTTA
146720 A-TTTTTTCTTTGAAACTTCCCTTTTTTCTAAAATACAGTTTTTTCTACTCCGTAAATTTTTTTG
65 ATTTTTTTC-TTGAAACTTCCCTTTTTTCTAAAATACAGTTTTTTCTACTCCGTAAATTTTTTTG
* * *
146784 GTGGGCTTTTTCTTGGTTTTTCATTTTTAAATTTCATA
129 G-GGGATTTTTCTTGGTTTTTAATTTTTAAATTTCATC
* * * *
146822 AAACATTATCATTTATTTCATATTAAGTCCATTTTCAAAAATTAATTCATTTTAATGAGTTTCTA
1 AAATATTATCATTTATTTCATATTAAAT-CATTTTCAAAAATTAATTCATTTTCATGAGTTTTTA
* * * ** * *
146887 ATTTTTTTCCTGAAAC-TCTCCTTTTTTTTGAAATATGGTGTTTTCTACTCTGTAAATTTTTTTA
65 ATTTTTTTCTTGAAACTTC-CCTTTTTTCTAAAATACAGTTTTTTCTACTCCGTAAATTTTTTT-
*
146951 GGGAGATTTTTCTTGGTTTTTAATTTTTAAATTTCATC
128 GGGGGATTTTTCTTGGTTTTTAATTTTTAAATTTCATC
* * * * * *
146989 AAATATTATCATTTATTTCATATTAAATACGTTTCCAAAATTTCATTGATTTT-ATTGATTTTTT
1 AAATATTATCATTTATTTCATATTAAAT-CATTTTCAAAAATTAATTCATTTTCA-TGA-GTTTT
* * *
147053 TATTTTTTGATTTTTTTTCTTGAAACTAT-CATTTTTTC-AAAATACGGTATTTTCTACTCCGTA
63 TA-------A-TTTTTTTCTTGAAACT-TCCCTTTTTTCTAAAATACAGTTTTTTCTACTCCGTA
* * *
147116 AACTTTTTTGGAGGGATTTTTCTCGGTTTTAAATTTTTAAAATTT-ATC
119 AATTTTTTTGG-GGGATTTTTCTTGGTTTTTAATTTTT-AAATTTCATC
* * * * *
147164 AAATATAATTATTTGATTT-ATATTAAAT-ATTTTTAAAAAATTAACTCATTTTCATGAGTTTTG
1 AAATATTATCATTT-ATTTCATATTAAATCA-TTTTCAAAAATTAATTCATTTTCATGAGTTTTT
* * * * ** * *
147227 GATTTTTTTATTGAAA-TT-CCTTTTTTTTATAAGCCTAG--TTTTCTTCTCCATAAATTTTTTT
64 AATTTTTTTCTTGAAACTTCCCTTTTTTCTAAAATAC-AGTTTTTTCTACTCCGTAAATTTTTTT
* **
147288 AGGGGGATTTTTCTTGGTGTAAAATTTTTAAA
128 -GGGGGATTTTTCTTGGTTTTTAATTTTTAAA
147320 ACTCATCTAA
Statistics
Matches: 552, Mismatches: 83, Indels: 64
0.79 0.12 0.09
Matches are distributed among these distances:
162 3 0.01
163 51 0.09
164 13 0.02
165 33 0.06
166 91 0.16
167 212 0.38
168 14 0.03
173 4 0.01
174 21 0.04
175 78 0.14
176 31 0.06
178 1 0.00
ACGTcount: A:0.28, C:0.11, G:0.09, T:0.52
Consensus pattern (165 bp):
AAATATTATCATTTATTTCATATTAAATCATTTTCAAAAATTAATTCATTTTCATGAGTTTTTAA
TTTTTTTCTTGAAACTTCCCTTTTTTCTAAAATACAGTTTTTTCTACTCCGTAAATTTTTTTGGG
GGATTTTTCTTGGTTTTTAATTTTTAAATTTCATC
Found at i:147060 original size:7 final size:8
Alignment explanation
Indices: 147034--147068 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
147024 CAAAATTTCA
147034 TTGATTTT
1 TTGATTTT
147042 ATTGATTTT
1 -TTGATTTT
*
147051 TTTATTTT
1 TTGATTTT
147059 TTGATTTT
1 TTGATTTT
147067 TT
1 TT
147069 TTCTTGAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
8 16 0.67
9 8 0.33
ACGTcount: A:0.14, C:0.00, G:0.09, T:0.77
Consensus pattern (8 bp):
TTGATTTT
Found at i:147064 original size:16 final size:17
Alignment explanation
Indices: 147037--147069 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
147027 AATTTCATTG
147037 ATTTTATTGATTTTTTT
1 ATTTTATTGATTTTTTT
147054 ATTTT-TTGATTTTTTT
1 ATTTTATTGATTTTTTT
147070 TCTTGAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.15, C:0.00, G:0.06, T:0.79
Consensus pattern (17 bp):
ATTTTATTGATTTTTTT
Found at i:152979 original size:15 final size:15
Alignment explanation
Indices: 152959--153020 Score: 61
Period size: 15 Copynumber: 3.8 Consensus size: 15
152949 AATTTTTATA
152959 AATTTAAATTAATTT
1 AATTTAAATTAATTT
152974 AATTTAAATTATTATTT
1 AATTTAAATTA--ATTT
* *
152991 AATAATAAAAATAATATT
1 AAT--TTAAATTAAT-TT
153009 AATTTAAATTAA
1 AATTTAAATTAA
153021 ATTATAAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
15 11 0.29
16 7 0.18
17 9 0.24
18 5 0.13
19 6 0.16
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTTAAATTAATTT
Found at i:156970 original size:2 final size:2
Alignment explanation
Indices: 156963--157018 Score: 105
Period size: 2 Copynumber: 28.5 Consensus size: 2
156953 AGATGTTGAC
156963 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
157004 AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT A
157019 AAACACTATT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:162481 original size:7 final size:8
Alignment explanation
Indices: 162469--162553 Score: 54
Period size: 7 Copynumber: 10.6 Consensus size: 8
162459 ATAATAAAAC
162469 TATTAA-A
1 TATTAATA
162476 TATTAATA
1 TATTAATA
*
162484 TAATACATA
1 TATTA-ATA
162493 TATTAA-A
1 TATTAATA
*
162500 T-GTAATA
1 TATTAATA
162507 TATTAATTA
1 TATTAA-TA
162516 TATTTAAATA
1 TA-TT-AATA
162526 TATT-ATA
1 TATTAATA
*
162533 TTATAAATA
1 -TATTAATA
*
162542 T-TTATTA
1 TATTAATA
162549 TATTA
1 TATTA
162554 TTTTTTATAT
Statistics
Matches: 61, Mismatches: 7, Indels: 19
0.70 0.08 0.22
Matches are distributed among these distances:
6 3 0.05
7 18 0.30
8 16 0.26
9 16 0.26
10 6 0.10
11 2 0.03
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (8 bp):
TATTAATA
Found at i:162496 original size:24 final size:23
Alignment explanation
Indices: 162449--162543 Score: 77
Period size: 24 Copynumber: 4.0 Consensus size: 23
162439 TCAGTGTATC
* *
162449 AAATATAAATATAATAAAACTATT
1 AAATATTAATATAATAATA-TATT
162473 AAATATTAATATAATACATATATT
1 AAATATTAATATAATA-ATATATT
* *
162497 AAAT-GTAATATATTAATTATATTT
1 AAATATTAATATAATAA-TATA-TT
* *
162521 AAATATATTATATTATAA-ATATT
1 AAATAT-TAATATAATAATATATT
162544 TATTATATTA
Statistics
Matches: 58, Mismatches: 8, Indels: 11
0.75 0.10 0.14
Matches are distributed among these distances:
22 1 0.02
23 15 0.26
24 32 0.55
25 2 0.03
26 8 0.14
ACGTcount: A:0.54, C:0.02, G:0.01, T:0.43
Consensus pattern (23 bp):
AAATATTAATATAATAATATATT
Done.