Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold464
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 258458
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.34
File 1 of 3
Found at i:15 original size:1 final size:1
Alignment explanation
Indices: 10--45 Score: 63
Period size: 1 Copynumber: 36.0 Consensus size: 1
1 GTGGTGGGT
*
10 GGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
46 TGTTTTGCAT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.00, C:0.00, G:0.97, T:0.03
Consensus pattern (1 bp):
G
Found at i:32 original size:21 final size:21
Alignment explanation
Indices: 6--45 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
1 GTGGT
6 GGGTGGGGGGGGGGGGGGGGG
1 GGGTGGGGGGGGGGGGGGGGG
27 GGGTGGGGGGGGGGGGGGG
1 GGGTGGGGGGGGGGGGGGG
46 TGTTTTGCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.00, C:0.00, G:0.95, T:0.05
Consensus pattern (21 bp):
GGGTGGGGGGGGGGGGGGGGG
Found at i:5280 original size:8 final size:8
Alignment explanation
Indices: 5267--5305 Score: 53
Period size: 8 Copynumber: 4.9 Consensus size: 8
5257 TATTTTTTAT
5267 AATAAAAA
1 AATAAAAA
5275 AATAAAAA
1 AATAAAAA
5283 AA-AAAAA
1 AATAAAAA
*
5290 ATTAAAAAA
1 AAT-AAAAA
5299 AATAAAA
1 AATAAAA
5306 GTTTATCAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
7 6 0.22
8 14 0.52
9 7 0.26
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (8 bp):
AATAAAAA
Found at i:5289 original size:14 final size:15
Alignment explanation
Indices: 5270--5305 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
5260 TTTTTATAAT
5270 AAAAAAA-TAAAAAA
1 AAAAAAATTAAAAAA
5284 AAAAAAATTAAAAAA
1 AAAAAAATTAAAAAA
*
5299 AATAAAA
1 AAAAAAA
5306 GTTTATCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAAAAATTAAAAAA
Found at i:12482 original size:18 final size:18
Alignment explanation
Indices: 12460--12507 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
12450 AAATGTGATC
12460 AATTTATTAATATAA-TT
1 AATTTATTAATATAATTT
*
12477 ATATTTATAAATATAATTT
1 A-ATTTATTAATATAATTT
12496 AATTT-TTAATAT
1 AATTTATTAATAT
12508 TTATAATTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 7 0.26
18 17 0.63
19 3 0.11
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATTTATTAATATAATTT
Found at i:13774 original size:146 final size:144
Alignment explanation
Indices: 13444--14279 Score: 827
Period size: 146 Copynumber: 5.8 Consensus size: 144
13434 TATTTTTAAA
* * * * *
13444 GTATGATTATAT-A-TTTAAATTTTTAATATATAAATTATTTTTATTTATAAAAATTTAAATTTG
1 GTATGATTATATGAGTTTAAA-TTTTAAGATATAATTTATTTTTATTTGTAGAAATTTAAATTTA
* * * *
13507 TTTTTAT---T-TGATTATATGAGTTTAAATTTTTAAGGTATTATTTATCTTTATTTTTTA-AGG
65 TTTTT-TGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTA-TTTGTAGAAG
13567 TTTAAATTTTAAATTTATTTTTG
128 TTTAAA-TTT--A--T-TTTTTG
* * * * *
13590 ATATAATTATATGAGTTTAAATTTTGAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTA
1 GTATGATTATATGAGTTTAAATTTT-AAGATATAATTTATTTTTATTTGTAGAAATTTAAATTTA
13655 TTTTTTGGGTATGATTATACT-AGTTTAAATTTTTGAAGGTATAATTTATTTTTATTTGTAGAAG
65 TTTTTTGGGTATGATTATA-TGAGTTTAAATTTTT-AAGGTATAATTTATTTTTATTTGTAGAAG
13719 TTTTAAATTTATTTTTTG
128 -TTTAAATTTATTTTTTG
* * * * *
13737 GTTTGATTATATAAGTTTAAATTTTAAGGTATAATTTAATTTTATTTGTATAAATTTAAATTTAT
1 GTATGATTATATGAGTTTAAATTTTAAGATATAATTTATTTTTATTTGTAGAAATTTAAATTTAT
* *
13802 TTTTTGGGTATGATTATATGAGTTTAAATTTTAAAGGTATAATTTATTTTTATTTGT-GAAAGCT
66 TTTTTGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTATTTGTAG-AAGTT
13866 TAAATTT-TATTTTTG
130 TAAATTTAT-TTTTTG
** * * * * *
13881 GATACAATTATACGAGTTTAAATTTTTGAAGTTATAAATTATTTTTATTTATA-AAAGTTTAAAG
1 G-TATGATTATATGAGTTTAAA-TTTT-AAGATATAATTTATTTTTATTTGTAGAAA-TTTAAAT
* * ** * * *
13945 TTATTTTTT-GATTTGATTATACAAGTTTAAAATTTTAAGGTATTATTTATCTTTATTTGTAGAA
62 TTATTTTTTGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTATTTGTAGAA
*
14009 GTTTAAATTTGTTTTTTAG
127 GTTTAAATTTATTTTTT-G
* * * * * *
14028 GTAT-AGTAATACGAATTTAAATTTTAAGATATCATTT-TTTTTGTTTGTAGAAATTTAAATTTG
1 GTATGA-TTATATGAGTTTAAATTTTAAGATATAATTTATTTTTATTTGTAGAAATTTAAATTTA
* * * * * * * *
14091 TATTTAGAGTATGATTATACGAGCTTAAATTTTTAAGGTATAATTCATTTTTATTTGTAAAAGAT
65 TTTTTTGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTATTTGTAGAAGTT
14156 TAAATTTATTTTTTG
130 TAAATTTATTTTTTG
* * * * * * *
14171 TTTTGATTATACGAGTTTAATTTTTAAGATATTATTTGTTTATTATTTGTAGAAGTTTAAATTTA
1 GTATGATTATATGAGTTTAAATTTTAAGATATAATTTATTT-TTATTTGTAGAAATTTAAATTTA
** * *
14236 TTTTTAAGGTATTATTATATGAGTTTAAATTTTTAGGGTATAAT
65 TTTTTTGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAAT
14280 GAGTTTAAAT
Statistics
Matches: 579, Mismatches: 84, Indels: 55
0.81 0.12 0.08
Matches are distributed among these distances:
143 53 0.09
144 92 0.16
145 105 0.18
146 155 0.27
147 73 0.13
148 44 0.08
150 2 0.00
151 26 0.04
152 23 0.04
153 6 0.01
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.54
Consensus pattern (144 bp):
GTATGATTATATGAGTTTAAATTTTAAGATATAATTTATTTTTATTTGTAGAAATTTAAATTTAT
TTTTTGGGTATGATTATATGAGTTTAAATTTTTAAGGTATAATTTATTTTTATTTGTAGAAGTTT
AAATTTATTTTTTG
Found at i:13794 original size:20 final size:19
Alignment explanation
Indices: 13765--13803 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
13755 AAATTTTAAG
*
13765 GTATAATTTAATTTTATTT
1 GTATAATTTAAATTTATTT
13784 GTATAAATTTAAATTTATTT
1 GTAT-AATTTAAATTTATTT
13804 TTTGGGTATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
GTATAATTTAAATTTATTT
Found at i:13806 original size:72 final size:72
Alignment explanation
Indices: 13444--14279 Score: 709
Period size: 72 Copynumber: 11.5 Consensus size: 72
13434 TATTTTTAAA
** * * * *
13444 GTATGATTATAT-A-TTTAAATTTTTAATATATAAATTATTTTTATTTATAAAAATTTAAATTTG
1 GTATGATTATATGAGTTTAAA-TTTTAAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTA
*
13507 TTTTTAT-
65 TTTTTTTG
* * *
13514 -T-TGATTATATGAGTTTAAATTTTTAAGGTATTATTTATCTTTATTTTTTAAGGTTTAAATTTT
1 GTATGATTATATGAGTTTAAA-TTTTAAGGTATAATTTATTTTTA-TTTGT-A-G---AAA-TTT
13577 AAATTTA--TTTTTG
58 AAATTTATTTTTTTG
* * ** * *
13590 ATATAATTATATGAGTTTAAATTTTGAAAATATGATTTATTTTTATTTGTAGAAGTTTAAATTTA
1 GTATGATTATATGAGTTTAAATTTT-AAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTA
*
13655 TTTTTTGG
65 TTTTTTTG
*
13663 GTATGATTATACT-AGTTTAAATTTTTGAAGGTATAATTTATTTTTATTTGTAGAAGTTTTAAAT
1 GTATGATTATA-TGAGTTTAAA-TTTT-AAGGTATAATTTATTTTTATTTGTAGAA-ATTTAAAT
13727 TTA-TTTTTTG
62 TTATTTTTTTG
* * * *
13737 GTTTGATTATATAAGTTTAAATTTTAAGGTATAATTTAATTTTATTTGTATAAATTTAAATTTAT
1 GTATGATTATATGAGTTTAAATTTTAAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTAT
*
13802 TTTTTGG
66 TTTTTTG
*
13809 GTATGATTATATGAGTTTAAATTTTAAAGGTATAATTTATTTTTATTTGT-GAAAGCTTAAATTT
1 GTATGATTATATGAGTTTAAATTTT-AAGGTATAATTTATTTTTATTTGTAGAAA-TTTAAATTT
*
13873 -TATTTTTG
64 ATTTTTTTG
** * * * * *
13881 GATACAATTATACGAGTTTAAATTTTTGAAGTTATAAATTATTTTTATTTATA-AAAGTTTAAAG
1 G-TATGATTATATGAGTTTAAA-TTTT-AAGGTATAATTTATTTTTATTTGTAGAAA-TTTAAAT
13945 TTA-TTTTTTG
62 TTATTTTTTTG
* * ** * * * *
13955 ATTTGATTATACAAGTTTAAAATTTTAAGGTATTATTTATCTTTATTTGTAGAAGTTTAAATTTG
1 GTATGATTATATGAGTTT-AAATTTTAAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTA
*
14020 TTTTTTAG
65 TTTTTTTG
* * * * * *
14028 GTAT-AGTAATACGAATTTAAATTTTAAGATATCATTT-TTTTTGTTTGTAGAAATTTAAATTT-
1 GTATGA-TTATATGAGTTTAAATTTTAAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTA
* * *
14090 GTATTTAG
65 TTTTTTTG
* * * *
14098 AGTATGATTATACGAGCTTAAATTTTTAAGGTATAATTCATTTTTATTTGTA-AAAGATTAAATT
1 -GTATGATTATATGAGTTTAAA-TTTTAAGGTATAATTTATTTTTATTTGTAGAAA-TTTAAATT
14162 TA-TTTTTTG
63 TATTTTTTTG
* * * * * * * *
14171 TTTTGATTATACGAGTTTAATTTTTAAGATATTATTTGTTTATTATTTGTAGAAGTTTAAATTTA
1 GTATGATTATATGAGTTTAAATTTTAAGGTATAATTTATTT-TTATTTGTAGAAATTTAAATTTA
**
14236 TTTTTAAG
65 TTTTTTTG
* *
14244 GTATTATTATATGAGTTTAAATTTTTAGGGTATAAT
1 GTATGATTATATGAGTTTAAA-TTTTAAGGTATAAT
14280 GAGTTTAAAT
Statistics
Matches: 624, Mismatches: 102, Indels: 76
0.78 0.13 0.09
Matches are distributed among these distances:
68 9 0.01
69 2 0.00
70 31 0.05
71 78 0.12
72 166 0.27
73 158 0.25
74 111 0.18
75 15 0.02
76 4 0.01
77 18 0.03
78 32 0.05
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.54
Consensus pattern (72 bp):
GTATGATTATATGAGTTTAAATTTTAAGGTATAATTTATTTTTATTTGTAGAAATTTAAATTTAT
TTTTTTG
Found at i:13822 original size:219 final size:214
Alignment explanation
Indices: 13444--14268 Score: 914
Period size: 219 Copynumber: 3.8 Consensus size: 214
13434 TATTTTTAAA
* ** *
13444 GTATGATTATA-TA-TTTAAATTTTTAATATATAAATTATTTTTATTTATAAAAATTTAAATTT-
1 GTATGATTATACGAGTTTAAATTTTTAAGGTATAAATTATTTTTATTTATAAAAGTTTAAATTTA
* ** *
13506 GTTTTT-ATTTGATTATATGAGTTTAAATTTTTAAGGTATTATTTATCTTTATTTTTTAAGGTTT
66 TTTTTTGATTTGATTATACAAGTTTAAA-TTTTAAGGTATTATTTATCTTTA-TTTGT-A-G---
* *
13570 AAATTTTAAATTTA-TTTTT-GATATAATTATATGAGTTTAAATTTTGAAAATATGATTTATTTT
124 AAA-TTTAAATTTATTTTTTAGGTAT-ATTATATGAGTTTAAATTTT-AAAATATAATTTATTTT
13633 TATTTGTAGAAGTTTAAATTTATTTTTTGG
186 TATTTGTAGAAGTTTAAATTT-TTTTTTGG
* * * *
13663 GTATGATTATACTAGTTTAAATTTTTGAAGGTATAATTTATTTTTATTTGTAGAAGTTTTAAATT
1 GTATGATTATACGAGTTTAAATTTTT-AAGGTATAAATTATTTTTATTTATAAAAG-TTTAAATT
* * * *
13728 TATTTTTTGGTTTGATTATATAAGTTTAAATTTTAAGGTATAATTTAAT-TTTATTTGTATAAAT
64 TATTTTTTGATTTGATTATACAAGTTTAAATTTTAAGGTATTATTT-ATCTTTATTTGTAGAAAT
* *
13792 TTAAATTTATTTTTTGGGTATGATTATATGAGTTTAAATTTTAAAGGTATAATTTATTTTTATTT
128 TTAAATTTATTTTTTAGGTAT-ATTATATGAGTTTAAATTTTAAA-ATATAATTTATTTTTATTT
*
13857 GT-GAAAGCTTAAATTTTATTTTTGG
191 GTAG-AAGTTTAAATTTT-TTTTTGG
* ** * *
13882 ATACAATTATACGAGTTTAAATTTTTGAAGTTATAAATTATTTTTATTTATAAAAGTTTAAAGTT
1 GTATGATTATACGAGTTTAAATTTTT-AAGGTATAAATTATTTTTATTTATAAAAGTTTAAATTT
*
13947 ATTTTTTGATTTGATTATACAAGTTTAAAATTTTAAGGTATTATTTATCTTTATTTGTAGAAGTT
65 ATTTTTTGATTTGATTATACAAGTTT-AAATTTTAAGGTATTATTTATCTTTATTTGTAGAAATT
* * * * * * *
14012 TAAATTTGTTTTTTAGGTATAGTAATACGAATTTAAATTTTAAGATATCATTT-TTTTTGTTTGT
129 TAAATTTATTTTTTAGGTATA-TTATATGAGTTTAAATTTTAAAATATAATTTATTTTTATTTGT
* * * *
14076 AGAAATTTAAATTTGTATTTAGA
193 AGAAGTTTAAATTT-TTTTTTGG
* * *
14099 GTATGATTATACGAGCTTAAATTTTTAAGGTAT-AATTCATTTTTATTTGTAAAAGATTAAATTT
1 GTATGATTATACGAGTTTAAATTTTTAAGGTATAAATT-ATTTTTATTTATAAAAGTTTAAATTT
* * * * * * *
14163 ATTTTTTGTTTTGATTATACGAGTTTAATTTTTAAGATATTATTTGTTTATTATTTGTAGAAGTT
65 ATTTTTTGATTTGATTATACAAGTTTAAATTTTAAGGTATTATTTATCT-TTATTTGTAGAAATT
*
14228 TAAATTTATTTTTAAGGTATTATTATATGAGTTTAAATTTT
129 TAAATTTATTTTTTAGGTA-TATTATATGAGTTTAAATTTT
14269 TAGGGTATAA
Statistics
Matches: 522, Mismatches: 64, Indels: 43
0.83 0.10 0.07
Matches are distributed among these distances:
215 23 0.04
216 101 0.19
217 58 0.11
218 57 0.11
219 188 0.36
220 2 0.00
221 11 0.02
222 24 0.05
223 13 0.02
224 24 0.05
225 21 0.04
ACGTcount: A:0.33, C:0.02, G:0.12, T:0.54
Consensus pattern (214 bp):
GTATGATTATACGAGTTTAAATTTTTAAGGTATAAATTATTTTTATTTATAAAAGTTTAAATTTA
TTTTTTGATTTGATTATACAAGTTTAAATTTTAAGGTATTATTTATCTTTATTTGTAGAAATTTA
AATTTATTTTTTAGGTATATTATATGAGTTTAAATTTTAAAATATAATTTATTTTTATTTGTAGA
AGTTTAAATTTTTTTTTGG
Found at i:14284 original size:97 final size:96
Alignment explanation
Indices: 14183--14372 Score: 244
Period size: 98 Copynumber: 2.0 Consensus size: 96
14173 TTGATTATAC
* *
14183 GAGTTT-AATTTTT-AA-GATATTATTTGTTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGG
1 GAGTTTAAATTTTTGAATG-TATAATTTATTT-TTATTTGTAGAAGTTTAAATTTATTTTT-AGG
* * *
14245 TATT-ATTATATGAGTTTAAATTTTTAGGGTATAAT
63 T-TTGATTATACGAATTT-AATTTTTAGAGTATAAT
* *
14280 GAGTTTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAATTTTAAATTTATTTTTTGGTTT
1 GAGTTTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTAGGTTT
14345 GATTATACGAATTTAATTTTTAGAGTAT
66 GATTATACGAATTTAATTTTTAGAGTAT
14373 TATTTATTTT
Statistics
Matches: 82, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
96 15 0.18
97 20 0.24
98 34 0.41
99 12 0.15
100 1 0.01
ACGTcount: A:0.31, C:0.01, G:0.14, T:0.55
Consensus pattern (96 bp):
GAGTTTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTAGGTTT
GATTATACGAATTTAATTTTTAGAGTATAAT
Found at i:14301 original size:25 final size:24
Alignment explanation
Indices: 14254--14304 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
14244 GTATTATTAT
*
14254 ATGAGTTTAAATTTTTAGGGTATA
1 ATGAGTTTAAATTTTTAAGGTATA
*
14278 ATGAGTTTAAATTTTTGAATGTATA
1 ATGAGTTTAAATTTTT-AAGGTATA
14303 AT
1 AT
14305 TTATTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (24 bp):
ATGAGTTTAAATTTTTAAGGTATA
Found at i:14384 original size:25 final size:24
Alignment explanation
Indices: 14360--14482 Score: 69
Period size: 24 Copynumber: 5.0 Consensus size: 24
14350 TACGAATTTA
14360 ATTTTTAGAGTATTATTTATTTTT
1 ATTTTTAGAGTATTATTTATTTTT
* * *
14384 ATTTGTAGAAGT-TTA--AATTTGT
1 ATTTTTAG-AGTATTATTTATTTTT
*
14406 -TTTTTAG-GTATGATTATACAATTTTT
1 ATTTTTAGAGTATTATT-T---ATTTTT
*
14432 AATTTTTAGAGTATAATTTATTTTT
1 -ATTTTTAGAGTATTATTTATTTTT
*
14457 ATTTGTAGAAGT-TTAAATTTATTTTT
1 ATTTTTAG-AGTATT--ATTTATTTTT
14483 TAGATACGAT
Statistics
Matches: 75, Mismatches: 10, Indels: 26
0.68 0.09 0.23
Matches are distributed among these distances:
19 2 0.03
20 2 0.03
21 6 0.08
22 5 0.07
24 18 0.24
25 12 0.16
26 15 0.20
28 8 0.11
29 7 0.09
ACGTcount: A:0.29, C:0.01, G:0.11, T:0.59
Consensus pattern (24 bp):
ATTTTTAGAGTATTATTTATTTTT
Found at i:14408 original size:26 final size:25
Alignment explanation
Indices: 14374--14482 Score: 77
Period size: 26 Copynumber: 4.4 Consensus size: 25
14364 TTAGAGTATT
14374 ATTTATTTTTATTTGTAGAAGTTTAA
1 ATTTATTTTTATTTGTAG-AGTTTAA
* **
14400 ATTTGTTTTT-TAGGTATGA-TTATACA
1 ATTTATTTTTATTTGTA-GAGTT-TA-A
* * *
14426 A--T-TTTTAATTTTTAGAGTAT-A
1 ATTTATTTTTATTTGTAGAGTTTAA
14447 ATTTATTTTTATTTGTAGAAGTTTAA
1 ATTTATTTTTATTTGTAG-AGTTTAA
14473 ATTTATTTTT
1 ATTTATTTTT
14483 TAGATACGAT
Statistics
Matches: 62, Mismatches: 11, Indels: 20
0.67 0.12 0.22
Matches are distributed among these distances:
21 2 0.03
23 8 0.13
24 18 0.29
25 11 0.18
26 23 0.37
ACGTcount: A:0.29, C:0.01, G:0.11, T:0.59
Consensus pattern (25 bp):
ATTTATTTTTATTTGTAGAGTTTAA
Found at i:14448 original size:169 final size:169
Alignment explanation
Indices: 14115--14448 Score: 492
Period size: 170 Copynumber: 2.0 Consensus size: 169
14105 TTATACGAGC
*
14115 TTAAATTTTTAAGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGTTTTGATTA
1 TTAAATTTTTAAGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGGTTTGATTA
* *
14180 TACGAGTTTAATTTTTAAGATATTATTTGTTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGG
66 TACGAATTTAATTTTTAAGATATTATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGG
* ** *
14245 TATTATTATATGAGTTTAAATTTTTAGGGTATAATGAGT
131 TATGATTATACAAGTTTAAATTTTTAGAGTATAATGAGT
* * * **
14284 TTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAATTTTAAATTTATTTTTTGGTTTGATT
1 TTAAATTTTT-AAGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGGTTTGATT
* *
14349 ATACGAATTTAATTTTT-AGAGTATTATTTATTT-TTATTTGTAGAAGTTTAAATTTGTTTTTTA
65 ATACGAATTTAATTTTTAAGA-TATTATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAA
* *
14412 GGTATGATTATACAATTTTTAATTTTTAGAGTATAAT
129 GGTATGATTATACAAGTTTAAATTTTTAGAGTATAAT
14449 TTATTTTTAT
Statistics
Matches: 147, Mismatches: 16, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
169 72 0.49
170 75 0.51
ACGTcount: A:0.31, C:0.01, G:0.12, T:0.55
Consensus pattern (169 bp):
TTAAATTTTTAAGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGGTTTGATTA
TACGAATTTAATTTTTAAGATATTATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGG
TATGATTATACAAGTTTAAATTTTTAGAGTATAATGAGT
Found at i:14464 original size:73 final size:72
Alignment explanation
Indices: 14281--14760 Score: 522
Period size: 73 Copynumber: 6.6 Consensus size: 72
14271 GGGTATAATG
* * *
14281 AGTTTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAATTTTAAATTTATTTTTT-GGTTT
1 AGTTTAAATTTTT-AA-GTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATAT
14345 GATTATACGA
64 GATTATAC-A
* * *
14355 A-TTT-AATTTTTAGAGTATTATTTATTTTTATTTGTAGAAGTTTAAATTTGTTTTTTAGGTATG
1 AGTTTAAATTTTTA-AGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATATG
14418 ATTATACA
65 ATTATACA
* * *
14426 ATTTTTAATTTTTAGAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATACG
1 AGTTTAAATTTTTA-AGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATATG
14491 ATTATACA
65 ATTATACA
* * * * * *
14499 AGTTTAAATTGTTGAAAGTATAATTTATTTTTATTT-CAGGAGTTTGAATCTATTTTTTGGATAT
1 AGTTTAAATT-TT-TAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATAT
14563 GATTATACA
64 GATTATACA
* * * * * *
14572 AGTTTAAATTTGTAAGGAATTATTTATCTTTATTTGTAAAAGTTTAAATTTGTTTTTTAGATATG
1 AGTTTAAATTTTTAA-GTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATATG
* *
14637 ATTTTACG
65 ATTATACA
* * * * * *
14645 AG-CTAAACTTTTAA-TACATTATTTATTTTTGTTTGTAGAAGTTTATATTTATTTTTTTGATAT
1 AGTTTAAATTTTTAAGT--ATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATAT
*
14708 AATTATACA
64 GATTATACA
* *
14717 AGTTTAAATTTTGTAAGCTATAATTTATTTCTATTTGTAAAAGT
1 AGTTTAAATTTT-TAAG-TATAATTTATTTTTATTTGTAGAAGT
14761 ATTATACAAG
Statistics
Matches: 342, Mismatches: 50, Indels: 28
0.81 0.12 0.07
Matches are distributed among these distances:
71 44 0.13
72 97 0.28
73 152 0.44
74 47 0.14
75 1 0.00
76 1 0.00
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (72 bp):
AGTTTAAATTTTTAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATTTATTTTTTAGATATGA
TTATACA
Found at i:14505 original size:242 final size:242
Alignment explanation
Indices: 14061--14508 Score: 591
Period size: 242 Copynumber: 1.9 Consensus size: 242
14051 TTAAGATATC
* * *
14061 ATTTTTTTTGTTTGTAGAAATTTAAATTTGTATTTAGAGTATGATTATACGAGCTTAAATTTTTA
1 ATTTTTTTTATTTGTAGAAATTTAAATTTATATTTAGAGTATGATTATACGAGATTAAATTTTTA
* * *
14126 AGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGTTTTGATTATACGAGTTTAA
66 AGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGGTATGATTATACAAGTTTAA
* * * ** *
14191 TTTTTAAGATATTATTTGTTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGGTATTATTATAT
131 TTTTTAAGATATAATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGATACGATTATAC
*
14256 GAGTTTAAATTTTTAGGGTATAATGAGTTTAAATTTTTGAATGTATA
196 AAGTTTAAATTTTTAGGGTATAATGAGTTTAAATTTTTGAATGTATA
* * * * *
14303 ATTTATTTTTATTTGTAGAATTTTAAATTTATTTTTTG-GTTTGATTATACGA-ATTTAATTTTT
1 ATTT-TTTTTATTTGTAGAAATTTAAATTTATATTTAGAGTATGATTATACGAGATTAAATTTTT
* * * * * *
14366 -AGAGTATTATTTATTTTTATTTGTAGAAGTTTAAATTTGTTTTTTAGGTATGATTATACAATTT
65 AAG-GTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTT-GGTATGATTATACAA-GT
*
14430 TTAATTTTT-AGAGTATAATTTATTT-TTATTTGTAGAAGTTTAAATTTATTTTTTAGATACGAT
127 TTAATTTTTAAGA-TATAATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGATACGAT
14493 TATACAAGTTTAAATT
191 TATACAAGTTTAAATT
14509 GTTGAAAGTA
Statistics
Matches: 176, Mismatches: 25, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
240 2 0.01
241 46 0.26
242 80 0.45
243 48 0.27
ACGTcount: A:0.31, C:0.02, G:0.12, T:0.54
Consensus pattern (242 bp):
ATTTTTTTTATTTGTAGAAATTTAAATTTATATTTAGAGTATGATTATACGAGATTAAATTTTTA
AGGTATAATTCATTTTTATTTGTAAAAGATTAAATTTATTTTTTGGTATGATTATACAAGTTTAA
TTTTTAAGATATAATTTATTTATTATTTGTAGAAGTTTAAATTTATTTTTAAGATACGATTATAC
AAGTTTAAATTTTTAGGGTATAATGAGTTTAAATTTTTGAATGTATA
Found at i:14523 original size:218 final size:217
Alignment explanation
Indices: 14281--14760 Score: 594
Period size: 218 Copynumber: 2.2 Consensus size: 217
14271 GGGTATAATG
* * * *
14281 AGTTTAAATTTTTGAATGTATAATTTATTTTTATTTGTAGAATTTTAAATTTATTTTTTGG-TTT
1 AGTTTAAA-TTTTGAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATCTATTTTTTGGATAT
* * * *
14345 GATTATACGAA-TTT-AATTT-TTAGAGTATTATTTATTTTTATTTGTAGAAGTTTAAATTTGTT
65 GATTATAC-AAGTTTAAATTTGTAAG-GAATTATTTATCTTTATTTGTAAAAGTTTAAATTTGTT
* ** * *
14407 TTTTAGGTATGATTATACAATTTTTAATTTTTAGAGT-ATAATTTATTTTTATTTGTAGAAGTTT
128 TTTTAGATATGATTATACAA-GCTAAACTTTTA-A-TAATAATTTATTTTTATTTGTAGAAGTTT
*
14471 AAATTTATTTTTTAGATACGATTATACA
190 AAATTTATTTTTTAGATACAATTATACA
* * *
14499 AGTTTAAATTGTTGAAAGTATAATTTATTTTTATTT-CAGGAGTTTGAATCTATTTTTTGGATAT
1 AGTTTAAATT-TTGAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATCTATTTTTTGGATAT
14563 GATTATACAAGTTTAAATTTGTAAGGAATTATTTATCTTTATTTGTAAAAGTTTAAATTTGTTTT
65 GATTATACAAGTTTAAATTTGTAAGGAATTATTTATCTTTATTTGTAAAAGTTTAAATTTGTTTT
* * * * *
14628 TTAGATATGATTTTACGAGCTAAACTTTTAATACATTATTTATTTTTGTTTGTAGAAGTTTATAT
130 TTAGATATGATTATACAAGCTAAACTTTTAATA-ATAATTTATTTTTATTTGTAGAAGTTTAAAT
* *
14693 TTATTTTTTTGATATAATTATACA
194 TTATTTTTTAGATACAATTATACA
* * *
14717 AGTTTAAATTTTGTAAGCTATAATTTATTTCTATTTGTAAAAGT
1 AGTTTAAATTTTGAAAG-TATAATTTATTTTTATTTGTAGAAGT
14761 ATTATACAAG
Statistics
Matches: 224, Mismatches: 29, Indels: 17
0.83 0.11 0.06
Matches are distributed among these distances:
216 1 0.00
217 30 0.13
218 129 0.58
219 61 0.27
220 3 0.01
ACGTcount: A:0.31, C:0.03, G:0.12, T:0.54
Consensus pattern (217 bp):
AGTTTAAATTTTGAAAGTATAATTTATTTTTATTTGTAGAAGTTTAAATCTATTTTTTGGATATG
ATTATACAAGTTTAAATTTGTAAGGAATTATTTATCTTTATTTGTAAAAGTTTAAATTTGTTTTT
TAGATATGATTATACAAGCTAAACTTTTAATAATAATTTATTTTTATTTGTAGAAGTTTAAATTT
ATTTTTTAGATACAATTATACA
Found at i:16296 original size:166 final size:165
Alignment explanation
Indices: 16053--16421 Score: 400
Period size: 166 Copynumber: 2.2 Consensus size: 165
16043 TTTCATCAGA
* * * * * * *
16053 AATCTATACATTAATCACATTTATTCAAAAATAAAATCCATGCATTAGTTCTATTTTTGAATTCC
1 AATCTATGCATTAATAACATTTATTCCAAAACAAAATCCATACATGAGTTCCATTTTTGAATTCC
**** * * * * * * *
16118 AATCCATGTATTAGTTTAATTCTTACAGTTTGATATTTACAATCCATTCATTAGTTTTGTCAACT
66 AATCCATGTATTAACCAAATTCTTACAGTCTAATATCTACAATCCATGCATTAATCTTATCAACT
*
16183 TCTTTCACATTC-GCAA-GAATTTGATTCCTATCAAG
131 TCTTTCACA-TCAG-AATAAATTTGATTCCTATCAAG
* * * *
16218 AATTTATGCATTAATAACATTTATTCCAAAACATAATTCATACATGAGTTCCATTTTTTGAATTT
1 AATCTATGCATTAATAACATTTATTCCAAAACAAAATCCATACATGAGTTCCA-TTTTTGAATTC
* *** * *
16283 CAATCCATGTATTAACCAAATTTTTGTTGTCTAATATCTATAATCCATGCATTAATCTTATCAAT
65 CAATCCATGTATTAACCAAATTCTTACAGTCTAATATCTACAATCCATGCATTAATCTTATCAAC
*
16348 TTCTTTTACATCAGAATAAATTTGATTCCTATCAAG
130 TTCTTTCACATCAGAATAAATTTGATTCCTATCAAG
* * *
16384 AATCTATGCATTAATTACATTTACTCCAAAACAGAATC
1 AATCTATGCATTAATAACATTTATTCCAAAACAAAATC
16422 TATGCATTAG
Statistics
Matches: 166, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
165 47 0.28
166 119 0.72
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (165 bp):
AATCTATGCATTAATAACATTTATTCCAAAACAAAATCCATACATGAGTTCCATTTTTGAATTCC
AATCCATGTATTAACCAAATTCTTACAGTCTAATATCTACAATCCATGCATTAATCTTATCAACT
TCTTTCACATCAGAATAAATTTGATTCCTATCAAG
Found at i:16910 original size:166 final size:166
Alignment explanation
Indices: 16638--17038 Score: 502
Period size: 166 Copynumber: 2.4 Consensus size: 166
16628 TTTCATTAGA
* * ** *
16638 AATCTATGCATTAATCACATTTATTCAAAAACAAAATCCATGCATTAATCCCATTTTTTAAATTC
1 AATCTATGCATTAATCACATTTATTCCAAAACAAAATCCATGCATTAATCTCATTTTTCGAATTT
* * * * * * * * *
16703 CAATCCATGTATTAGTCTAATTCTTTCAGTCTGACATTTACAATCCATTCATTAGTCTTGTCAAC
66 CAATACATGCATTAGCCAAATTCTTTCAGTCTAACATTTACAATACATGCATTAATCTTATCAAC
* *
16768 TTTTTTCACATCAGAA-AGAATTTGATTCTTATCAAG
131 TTCTTTCACATCAGAATA-AATTTGATTCCTATCAAG
* * * * * *
16804 AATTTATGCATTAATCATATTTATTCCAAAACAAAATCCATACATGAGTCTTATTTTTCGAATTT
1 AATCTATGCATTAATCACATTTATTCCAAAACAAAATCCATGCATTAATCTCATTTTTCGAATTT
* *
16869 CAATACATGCATTAGCCAAATTTTTATC-GTCTAATATTTACAATACATGCATTAATCTTATCAA
66 CAATACATGCATTAGCCAAATTCTT-TCAGTCTAACATTTACAATACATGCATTAATCTTATCAA
* *
16933 CTTCTTTCATATCATAATAAATTTGATTCCTATCAAG
130 CTTCTTTCACATCAGAATAAATTTGATTCCTATCAAG
* *
16970 AATCTATGCATTAATCACATTTATTCC-AAACAAAATCTATGCATTAATCTCATCTTTCGAATTT
1 AATCTATGCATTAATCACATTTATTCCAAAACAAAATCCATGCATTAATCTCATTTTTCGAATTT
*
17034 TAATA
66 CAATA
17039 AAAAATTTAT
Statistics
Matches: 198, Mismatches: 35, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
165 35 0.18
166 160 0.81
167 3 0.02
ACGTcount: A:0.35, C:0.19, G:0.06, T:0.40
Consensus pattern (166 bp):
AATCTATGCATTAATCACATTTATTCCAAAACAAAATCCATGCATTAATCTCATTTTTCGAATTT
CAATACATGCATTAGCCAAATTCTTTCAGTCTAACATTTACAATACATGCATTAATCTTATCAAC
TTCTTTCACATCAGAATAAATTTGATTCCTATCAAG
Found at i:19497 original size:33 final size:33
Alignment explanation
Indices: 19435--19500 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
19425 TTGTTACAAG
*
19435 TAATATATCAATACAATTCATCATGTATCGATA
1 TAATATATCAATACAATTCATCATATATCGATA
*
19468 TAATATATCGATAC-ATT-ATACCATATATCGATA
1 TAATATATCAATACAATTCAT--CATATATCGATA
19501 CAAACAGTGA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
31 2 0.07
32 3 0.10
33 24 0.83
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (33 bp):
TAATATATCAATACAATTCATCATATATCGATA
Found at i:19576 original size:19 final size:19
Alignment explanation
Indices: 19531--19584 Score: 90
Period size: 20 Copynumber: 2.8 Consensus size: 19
19521 ACTGTCAATT
*
19531 TCATGTATCGATACAATTA
1 TCATGTATCGATACAATGA
19550 TCCATGTATCGATACAATGA
1 T-CATGTATCGATACAATGA
19570 TCATGTATCGATACA
1 TCATGTATCGATACA
19585 TAGTATCAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 2
0.92 0.03 0.06
Matches are distributed among these distances:
19 15 0.45
20 18 0.55
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (19 bp):
TCATGTATCGATACAATGA
Found at i:19614 original size:33 final size:32
Alignment explanation
Indices: 19555--19618 Score: 92
Period size: 33 Copynumber: 2.0 Consensus size: 32
19545 AATTATCCAT
* * *
19555 GTATCGATACAATGATCATGTATCGATACATA
1 GTATCAATACAAAGATAATGTATCGATACATA
19587 GTATCAATACAAAGCATAATGTATCGATACAT
1 GTATCAATACAAAG-ATAATGTATCGATACAT
19619 CTGGGTATGT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 12 0.43
33 16 0.57
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (32 bp):
GTATCAATACAAAGATAATGTATCGATACATA
Found at i:22123 original size:13 final size:13
Alignment explanation
Indices: 22105--22131 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22095 ATAGTAACCT
22105 ATGTATCGATACA
1 ATGTATCGATACA
22118 ATGTATCGATACA
1 ATGTATCGATACA
22131 A
1 A
22132 GGAATGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:29491 original size:13 final size:13
Alignment explanation
Indices: 29473--29497 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29463 CAAAGATCAG
29473 TGTATCGATACAA
1 TGTATCGATACAA
29486 TGTATCGATACA
1 TGTATCGATACA
29498 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:29578 original size:32 final size:32
Alignment explanation
Indices: 29535--29635 Score: 166
Period size: 32 Copynumber: 3.1 Consensus size: 32
29525 GGCAGTAGCT
* *
29535 TACATTGTATCGATACAAAACTTATGTATTGA
1 TACATTGTATCGATACAACACTTATGTATCGA
*
29567 TACATTATATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
29599 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
29632 TACA
1 TACA
29636 AATCGTTGAA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:29598 original size:19 final size:19
Alignment explanation
Indices: 29540--29636 Score: 83
Period size: 19 Copynumber: 5.7 Consensus size: 19
29530 TAGCTTACAT
*
29540 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
29559 TGTATTGAT---ACA-TTA
1 TGTATCGATACAACACTTA
29574 --TATCGATACAACACTTA
1 TGTATCGATACAACACTTA
29591 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
29604 TGTATCGATACAACACTTTA
1 TGTATCGATACAACAC-TTA
29624 TGTATCGATACAA
1 TGTATCGATACAA
29637 ATCGTTGAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 25
0.69 0.03 0.28
Matches are distributed among these distances:
13 15 0.24
14 1 0.02
15 3 0.05
16 11 0.18
17 3 0.05
19 16 0.26
20 13 0.21
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.35
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:31937 original size:13 final size:13
Alignment explanation
Indices: 31919--31944 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31909 CAATTTTTTG
31919 TGTATCGATACAT
1 TGTATCGATACAT
31932 TGTATCGATACAT
1 TGTATCGATACAT
31945 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:31959 original size:32 final size:33
Alignment explanation
Indices: 31899--31962 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
31889 TACAAGCCAA
** *
31899 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
31932 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
31963 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:33952 original size:13 final size:13
Alignment explanation
Indices: 33934--33958 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33924 ATTGAAGTAA
33934 TGTATCGATACAT
1 TGTATCGATACAT
33947 TGTATCGATACA
1 TGTATCGATACA
33959 ATCTGGAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:34558 original size:23 final size:24
Alignment explanation
Indices: 34513--34559 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
34503 CAAAGAATTG
*
34513 AACACAAATTCAATTAAGCACAAA
1 AACACAAATTCAATTAAGAACAAA
34537 AACACAAA-TCAATTGAA-AACAAA
1 AACACAAATTCAATT-AAGAACAAA
34560 TTTTCAACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.62, C:0.19, G:0.04, T:0.15
Consensus pattern (24 bp):
AACACAAATTCAATTAAGAACAAA
Found at i:37641 original size:13 final size:13
Alignment explanation
Indices: 37623--37648 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37613 CAATTTTTTG
37623 TGTATCGATACAT
1 TGTATCGATACAT
37636 TGTATCGATACAT
1 TGTATCGATACAT
37649 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:37663 original size:32 final size:33
Alignment explanation
Indices: 37603--37666 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
37593 TACAAGCCAA
** *
37603 TGTATCGATACAATTTTTTGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
37636 TGTATCGATAC-ATACTTGGTGTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
37667 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:38763 original size:33 final size:32
Alignment explanation
Indices: 38720--38788 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 32
38710 CCGTTACAAG
38720 CAATGCATCGATACAATTCAT-CATGTATCAATA
1 CAATGCATCGATAC-ATT-ATACATGTATCAATA
* *
38753 CAATGTATCGATACATTATACCATGTATCGATA
1 CAATGCATCGATACATTATA-CATGTATCAATA
38786 CAA
1 CAA
38789 ACAGTGATAG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 2 0.06
32 3 0.09
33 27 0.84
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.30
Consensus pattern (32 bp):
CAATGCATCGATACATTATACATGTATCAATA
Found at i:38773 original size:20 final size:20
Alignment explanation
Indices: 38750--38787 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
38740 TCATGTATCA
38750 ATACAATGTATCGATACATT
1 ATACAATGTATCGATACATT
*
38770 ATACCATGTATCGATACA
1 ATACAATGTATCGATACA
38788 AACAGTGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (20 bp):
ATACAATGTATCGATACATT
Found at i:38861 original size:19 final size:19
Alignment explanation
Indices: 38821--38873 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
38811 TGATTTAATA
38821 TATCGATACAATTGTCCATG
1 TATCGATACAA-TGTCCATG
38841 TATCGATACAATGAT-CATG
1 TATCGATACAATG-TCCATG
*
38860 TATCGATATAATGT
1 TATCGATACAATGT
38874 ATTGATACAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
18 1 0.03
19 18 0.58
20 12 0.39
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.36
Consensus pattern (19 bp):
TATCGATACAATGTCCATG
Found at i:38899 original size:33 final size:32
Alignment explanation
Indices: 38838--38900 Score: 90
Period size: 32 Copynumber: 1.9 Consensus size: 32
38828 ACAATTGTCC
* *
38838 ATGTATCGATACAATGATCATGTATCGATATA
1 ATGTATCGATACAAAGATAATGTATCGATATA
*
38870 ATGTATTGATACAAAGCATAATGTATCGATA
1 ATGTATCGATACAAAG-ATAATGTATCGATA
38901 CATCTGGGTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 14 0.52
33 13 0.48
ACGTcount: A:0.40, C:0.11, G:0.16, T:0.33
Consensus pattern (32 bp):
ATGTATCGATACAAAGATAATGTATCGATATA
Found at i:39705 original size:20 final size:22
Alignment explanation
Indices: 39662--39709 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
39652 AAATAGTAAT
*
39662 TTATTAAAAAGTAAACTATATA
1 TTATGAAAAAGTAAACTATATA
39684 TTATGAAAAAGTAAA-T-TATA
1 TTATGAAAAAGTAAACTATATA
39704 TTATGA
1 TTATGA
39710 GTTTTAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 1 0.04
22 14 0.56
ACGTcount: A:0.52, C:0.02, G:0.08, T:0.38
Consensus pattern (22 bp):
TTATGAAAAAGTAAACTATATA
Found at i:42860 original size:2 final size:2
Alignment explanation
Indices: 42855--42885 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
42845 TATTATAAAT
*
42855 AC AC AC AC AT AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
42886 TATATATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:42924 original size:16 final size:16
Alignment explanation
Indices: 42905--42935 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
42895 ATATATATAT
42905 ATATATACACACACAC
1 ATATATACACACACAC
*
42921 ATATATGCACACACA
1 ATATATACACACACA
42936 TAAAGAAGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.29, G:0.03, T:0.19
Consensus pattern (16 bp):
ATATATACACACACAC
Found at i:42926 original size:2 final size:2
Alignment explanation
Indices: 42885--42911 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
42875 ACACACACAC
42885 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
42912 CACACACACA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:43139 original size:4 final size:4
Alignment explanation
Indices: 43130--43159 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
43120 ATCACATCTT
43130 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
43160 TTTAAAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:44132 original size:20 final size:19
Alignment explanation
Indices: 44080--44135 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
44070 TTAAAAATTA
*
44080 ATTTTATATAACAAAT-TA-
1 ATTTTATA-AATAAATATAG
*
44098 ATTTTATATATAAATATAG
1 ATTTTATAAATAAATATAG
44117 ATTTTAATAAATAAATATA
1 ATTTT-ATAAATAAATATA
44136 TTAAAAATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
17 5 0.16
18 10 0.31
19 5 0.16
20 12 0.38
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (19 bp):
ATTTTATAAATAAATATAG
Found at i:44139 original size:16 final size:16
Alignment explanation
Indices: 44119--44159 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
44109 AAATATAGAT
44119 TTTAATAAATAA-ATA
1 TTTAATAAATAACATA
44134 TATTAA-AAATAACATA
1 T-TTAATAAATAACATA
44150 TTATAATAAA
1 TT-TAATAAA
44160 AATATACTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 8 0.36
16 11 0.50
17 3 0.14
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TTTAATAAATAACATA
Found at i:44188 original size:32 final size:30
Alignment explanation
Indices: 44119--44188 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
44109 AAATATAGAT
* * *
44119 TTTAATAA-ATAAATATATTAAAAATAACA
1 TTTAATAATAAAAATATATCAAAAATAAAA
44148 TATT-ATAATAAAAATATACTCAAAAATAATAA
1 T-TTAATAATAAAAATATA-TCAAAAATAA-AA
44180 TTTAATAAT
1 TTTAATAAT
44189 TTACTTTTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
29 5 0.15
30 10 0.30
31 11 0.33
32 7 0.21
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (30 bp):
TTTAATAATAAAAATATATCAAAAATAAAA
Found at i:44335 original size:16 final size:16
Alignment explanation
Indices: 44316--44375 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
44306 ATTCGAACAT
*
44316 GAAAAAACTCAAATCC
1 GAAAAAGCTCAAATCC
*
44332 GAAAAAGCTCGAATCC
1 GAAAAAGCTCAAATCC
*
44348 -AAATAAGCTCAAACCC
1 GAAA-AAGCTCAAATCC
*
44364 GAATAAG-TCAAA
1 GAAAAAGCTCAAA
44376 CTAGAAAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
15 8 0.22
16 27 0.73
17 2 0.05
ACGTcount: A:0.52, C:0.23, G:0.12, T:0.13
Consensus pattern (16 bp):
GAAAAAGCTCAAATCC
Found at i:50256 original size:2 final size:2
Alignment explanation
Indices: 50251--50288 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
50241 ATAGTGTGTG
50251 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
50289 GACACGCACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:55582 original size:13 final size:13
Alignment explanation
Indices: 55564--55588 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55554 CATAAAGTGT
55564 TGTATCGATACAA
1 TGTATCGATACAA
55577 TGTATCGATACA
1 TGTATCGATACA
55589 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:55586 original size:33 final size:33
Alignment explanation
Indices: 55544--55610 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
55534 TTCAACGATT
55544 TGTATCGATACATAAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
*** *
55577 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTGTTGTATCGATACAA
55610 T
1 T
55611 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAGTGTTGTATCGATACAA
Found at i:55669 original size:13 final size:13
Alignment explanation
Indices: 55651--55675 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
55641 ATCACTTAAA
55651 TGTATCGATACAT
1 TGTATCGATACAT
55664 TGTATCGATACA
1 TGTATCGATACA
55676 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:55740 original size:52 final size:52
Alignment explanation
Indices: 55684--55812 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
55674 CACTGATCTT
* *
55684 TGTATCGATACATGCAGGAAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
**
55736 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTCAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
55788 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
55813 TCATATTTCG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:60317 original size:16 final size:16
Alignment explanation
Indices: 60298--60336 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
60288 TTTTTAATTG
60298 ATTTTAAGTTTAGATT
1 ATTTTAAGTTTAGATT
*
60314 ATTTTAGGTTTAGATT
1 ATTTTAAGTTTAGATT
60330 ATTTTAA
1 ATTTTAA
60337 ATTCTAGTTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.13, T:0.56
Consensus pattern (16 bp):
ATTTTAAGTTTAGATT
Found at i:62056 original size:14 final size:15
Alignment explanation
Indices: 62032--62061 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
62022 ATATGAGAGA
62032 ATTATAATATTATAT
1 ATTATAATATTATAT
62047 ATTA-AATATTATAT
1 ATTATAATATTATAT
62061 A
1 A
62062 ACATTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 11 0.73
15 4 0.27
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATATTATAT
Found at i:62076 original size:24 final size:25
Alignment explanation
Indices: 62034--62085 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
62024 ATGAGAGAAT
* * *
62034 TATAATATTATATA-TTAAATATTA
1 TATAACATTATATAGTAAAATATAA
*
62058 TATAACATTATTTAGTAAAATATAA
1 TATAACATTATATAGTAAAATATAA
62083 TAT
1 TAT
62086 TATAATATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (25 bp):
TATAACATTATATAGTAAAATATAA
Found at i:68463 original size:19 final size:19
Alignment explanation
Indices: 68439--68523 Score: 92
Period size: 19 Copynumber: 4.7 Consensus size: 19
68429 TAGCTTACAT
68439 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
*
68458 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
*
68477 TGTATCGATAC---A---G
1 TGTATCGATACAAAACTTA
*
68490 TGTATCGATACAACACTTTA
1 TGTATCGATACAAAAC-TTA
68510 TGTATCGATACAAA
1 TGTATCGATACAAA
68524 TCGTTGAAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
13 11 0.20
16 2 0.04
19 29 0.53
20 13 0.24
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:68495 original size:13 final size:13
Alignment explanation
Indices: 68477--68501 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
68467 ACAACACTTA
68477 TGTATCGATACAG
1 TGTATCGATACAG
68490 TGTATCGATACA
1 TGTATCGATACA
68502 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:68499 original size:32 final size:33
Alignment explanation
Indices: 68458--68521 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 33
68448 ACAAAACTTA
68458 TGTATCGATACAACAC-TTATGTATCGATACAG
1 TGTATCGATACAACACTTTATGTATCGATACAG
68490 TGTATCGATACAACACTTTATGTATCGATACA
1 TGTATCGATACAACACTTTATGTATCGATACA
68522 AATCGTTGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 16 0.52
33 15 0.48
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (33 bp):
TGTATCGATACAACACTTTATGTATCGATACAG
Found at i:69445 original size:158 final size:149
Alignment explanation
Indices: 69368--71131 Score: 855
Period size: 140 Copynumber: 12.6 Consensus size: 149
69358 AGGAATGTTG
* *
69368 AAGATGAAGGTGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
** ** **
69433 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAG
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
*
69498 GCCAGCTATATTGGACTTC
131 GCCAGCCATATTGGACTTC
*
69517 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--GGA-GG----T--GC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* ** * ** * **
69573 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATATGCTGATTCAA
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGA-CAAAATGCCAATATGCTGAGGCAA
*
69638 GGCCAGCGATATTGGACTT-
130 GGCCAGCCATATTGGACTTC
* * * * * * *
69657 AA-AT----GTGCCAATGTGATGATTCAAGGCCAGCTACATTAGACTTAAAGAT-G--AATGTGT
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* * ** * * * **
69714 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-----GTGCCAATGTGTTGATTCAAG
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
* * *
69774 GCCAGCGACATTGGACTTA
131 GCCAGCCATATTGGACTTC
* * * * *
69793 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTCAAGAT-G--AAGGTGC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* * ** * ** * **
69854 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--GAGGTGCCAATGTGCTGATTCAAG
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
* *
69914 GCCAGCGATATTGGACTTA
131 GCCAGCCATATTGGACTTC
* * * * *
69933 AAGATGGCAAATGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA---C-AAGG
1 AAGAT-G--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATG
* * * * ** * ** **
69994 TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGATGAAGGTGCCAATATGCTGATT
63 CGCCAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGA-CAAAATGCCAATATGCTGAGG
*
70059 CAAGGCCAGCGATATTGGACTT-
127 CAAGGCCAGCCATATTGGACTTC
* * * * * *
70081 --G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G--AAGGTGT
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* * ** * **
70138 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAATG------TGCCAATGTGCTGATTCAA
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAA-GACAAAATGCCAATATGCTGAGGCAA
* * * *
70197 GGCCAGCTACATTAGACTTA
130 GGCCAGCCATATTGGACTTC
* *
70217 AAGATGAATGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A--G---AT--GC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* ** ** *
70273 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACAAAGGCGCCAATATGCTGAT
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTT--AA-A-GACAAA-ATGCCAATATGCTGAG
* * * *
70338 TCAAGGCTAGCGATATTGGACTTA
126 GCAAGGCCAGCCATATTGGACTTC
* *
70362 AAGATTAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--GGA-GG----T--GC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* ** * * * **
70418 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGTCAATATGCTGATTCAA
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGA-CAAAATGCCAATATGCTGAGGCAA
* * *
70483 GGCCAACGATATTGGGCTT-
130 GGCCAGCCATATTGGACTTC
* * * * *
70502 ---A--AAGGTGCCAATGTGCTGATTCAAGACCAGCTACT-TTGGACTTAAAGAT-G--AAGGTG
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTAAAGATGGCAAATGCG
* * * * ** * * **
70558 TCAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAG-----GTGCCAATGTGCTGATTCAA
65 CCAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAA
* * * *
70618 GGCCATCTACATTGGACTTA
130 GGCCAGCCATATTGGACTTC
* * *
70638 AAGATGAAGGTACCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT-AA-A-GG----T--GC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* ** ** **
70694 CAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAGACAAGGTGCCAATATGCTGATTCAAG
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
* *
70759 GCCAGCTATATTAGACTT-
131 GCCAGCCATATTGGACTTC
* * * * * *
70777 ---A--AAGGTGCCAATATGCTGATTCAAGGCCAACTACATTGGACTTAAAGAT-G--AAGGTGT
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* * * ** * * **
70834 TAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAG-----GTGCCAATGTGCTGATTCAAG
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
* * *
70894 GCCAGCGACATTGGACTTA
131 GCCAGCCATATTGGACTTC
* * *
70913 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT-AA-A-GG----T--GC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
* * ** ** * **
70968 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGGTAAAGGTGCCAATATGCTGATTCAA
66 CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAA-ATGCCAATATGCTGAGGCAA
*
71033 GGCCAGCGATATTGGACTT-
130 GGCCAGCCATATTGGACTTC
* * * * * * *
71052 --G--GAA-GTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAAAT---AAAGGTGC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
*
71109 CAATATGCTGATTCAAGGCCAGC
66 CAATGTGCTGATTCAAGGCCAGC
71132 TATATTGGAC
Statistics
Matches: 1378, Mismatches: 139, Indels: 204
0.80 0.08 0.12
Matches are distributed among these distances:
134 71 0.05
135 316 0.23
136 10 0.01
137 14 0.01
138 7 0.01
139 10 0.01
140 364 0.26
141 285 0.21
142 6 0.00
143 44 0.03
144 41 0.03
145 117 0.08
146 5 0.00
147 2 0.00
149 86 0.06
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (149 bp):
AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGC
CAATGTGCTGATTCAAGGCCAGCGACATTAAACTTAAAGACAAAATGCCAATATGCTGAGGCAAG
GCCAGCCATATTGGACTTC
Found at i:69546 original size:49 final size:49
Alignment explanation
Indices: 69368--71144 Score: 1910
Period size: 43 Copynumber: 38.0 Consensus size: 49
69358 AGGAATGTTG
* *
69368 AAGATGAAGGTGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
69417 AAGATGGCAAATGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGAT-G--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
69469 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
69517 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
69565 --G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
69609 AAGATGAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * * *
69657 AA-AT----GTGCCAATGTGATGATTCAAGGCCAGCTACATTAGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
69701 AAGATGAATGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
69749 ---A--AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
69793 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTC
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
69841 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
69889 --G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
69933 AAGATGGCAAATGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGAT-G--AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
69985 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
70033 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70081 --G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
70125 AAGATGAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
70173 AA-AT----GTGCCAATGTGCTGATTCAAGGCCAGCTACATTAGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
70217 AAGATGAATGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70265 AA-A-G-A--TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-A
* *
70310 AAGATGACAAAGGCGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTA
1 AAGATG---AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
*
70362 AAGATTAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70410 --G--G-AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
70454 AAGATGAAAGTGTCAATATGCTGATTCAAGGCCAACGATATTGGGCTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70502 ---A--AAGGTGCCAATGTGCTGATTCAAGACCAGCTACT-TTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGA-TATTGGACTTA
* *
70546 AAGATGAAGGTGTCAATATGCTAATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
70594 ---A--AAGGTGCCAATGTGCTGATTCAAGGCCATCTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70638 AAGATGAAGGTACCAATATGTTGATTCAAGGCCAGCGATATTGGGCTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70686 ---A--AAGGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70730 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTAGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70777 ---A--AAGGTGCCAATATGCTGATTCAAGGCCAACTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
**
70821 AAGATGAAGGTGTTAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
70869 ---A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
70913 AAGA-CAAGGTGCCAATATGCTGATTCAAGGCCAACTATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
70960 ---A--AAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* *
71004 AAGGTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * * *
71052 --G--GAA-GTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
* * *
71096 AAAATAAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTA
1 AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
71145 GAAGGGTTGC
Statistics
Matches: 1461, Mismatches: 165, Indels: 204
0.80 0.09 0.11
Matches are distributed among these distances:
43 549 0.38
44 12 0.01
45 12 0.01
46 11 0.01
47 12 0.01
48 212 0.15
49 526 0.36
50 1 0.00
51 1 0.00
52 92 0.06
53 33 0.02
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (49 bp):
AAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA
Found at i:69603 original size:92 final size:92
Alignment explanation
Indices: 69374--71149 Score: 2062
Period size: 92 Copynumber: 19.0 Consensus size: 92
69364 GTTGAAGATG
* * * * *
69374 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGATATTGGACTTAAAGATGGCAAATGCGCCAATGT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-G--AAGGTGCCAATAT
*
69439 GCTGATTCAAGGCCAGCGACATTGGACTTAAAGA
63 GCTGATTCAAGGCCAGCGATATTGGACTT----A
* * * *
69473 CAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTCAAGATGAAGGTGCCAATATGC
1 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGC
*
69538 TGATTCAAGGCCAGCGATATTGGACTTG
65 TGATTCAAGGCCAGCGATATTGGACTTA
* * *
69566 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGTCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
69631 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * * * *
69658 AATGTGCCAATGTGATGATTCAAGGCCAGCTACATTAGACTTAAAGATGAATGTGTCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
69723 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* *
69750 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGACTTAAAGA-CAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
69814 GATTCAAGGCCAGCTATATTGGACTTCAAGA
66 GATTCAAGGCCAGCGATATTGGACTT----A
* * *
69845 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
69904 CTGATTCAAGGCCAGCGATATTGGACTTAA
64 CTGATTCAAGGCCAGCGATATTGGACTT-A
*
69934 AGATGGCAAATGCGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-CAAGGTGCC
1 A-A-GG----T--GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCC
*
69998 AATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGA
58 AATATGCTGATTCAAGGCCAGCGATATTGGACTT----A
* * *
70037 TGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
* *
70096 CTGATTCAAGGCCAGCTACATTGGACTTAAAGA
64 CTGATTCAAGGCCAGCGATATTGGACTT----A
* * * *
70129 TGAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-AT----GTGCCAATGTG
1 --AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATG
* * *
70188 CTGATTCAAGGCCAGCTACATTAGACTTAA
64 CTGATTCAAGGCCAGCGATATTGGACTT-A
* * *
70218 AGATGAATGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A-G-A--TGCCAAT
1 A-A-G---GTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAAT
* * *
70277 GTGCTGATTCAAGGCCAGCTACATTGGACTTAAAAGATGACA
61 ATGCTGATTCAAGGCCAGCGATATTGGAC-T------T---A
* * * * *
70319 AAGGCGCCAATATGCTGATTCAAGGCTAGCGATATTGGACTTAAAGATTAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
70384 GATTCAAGGCCAGCGATATTGGACTTG
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * *
70411 GAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAAGTGTCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* *
70476 GATTCAAGGCCAACGATATTGGGCTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * *
70503 AAGGTGCCAATGTGCTGATTCAAGACCAGCTACTTTGGACTTAAAGATGAAGGTGTCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
70568 AATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * *
70595 AAGGTGCCAATGTGCTGATTCAAGGCCATCTACATTGGACTTAAAGATGAAGGTACCAATATGTT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
70660 GATTCAAGGCCAGCGATATTGGGCTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* *
70687 AAGGTGCCAATGTGCTAATTCAAGGCCAGCGACATTGGACTTAAAGA-CAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* *
70751 GATTCAAGGCCAGCTATATTAGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * **
70778 AAGGTGCCAATATGCTGATTCAAGGCCAACTACATTGGACTTAAAGATGAAGGTGTTAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
70843 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
*
70870 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA-CAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
* *
70934 GATTCAAGGCCAACTATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
* * * *
70961 AAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGGTAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
71026 GATTCAAGGCCAGCGATATTGGACTTGG
66 GATTCAAGGCCAGCGATATTGGACTT-A
* * * *
71054 AA-GTGCCAATGTGCTGATTTAAGGCCAGCTACATTGGACTTAAAAATAAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
*
71118 GATTCAAGGCCAGCTATATTGGACTTA
66 GATTCAAGGCCAGCGATATTGGACTTA
71145 GAAGG
1 -AAGG
71150 GTTGCCACCA
Statistics
Matches: 1496, Mismatches: 125, Indels: 117
0.86 0.07 0.07
Matches are distributed among these distances:
87 2 0.00
88 2 0.00
89 5 0.00
91 203 0.14
92 958 0.64
93 5 0.00
94 2 0.00
95 37 0.02
96 36 0.02
97 114 0.08
98 2 0.00
99 4 0.00
100 85 0.06
101 3 0.00
102 33 0.02
103 3 0.00
104 1 0.00
105 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26
Consensus pattern (92 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGCCAATATGCT
GATTCAAGGCCAGCGATATTGGACTTA
Found at i:69753 original size:22 final size:22
Alignment explanation
Indices: 69728--69795 Score: 52
Period size: 22 Copynumber: 3.1 Consensus size: 22
69718 ATGCTGATTC
69728 AAGGCCAGCGATATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
** * *
69750 AAGGTGCCAATG-TGTT-GA-TTC
1 AA-G-GCCAGCGATATTGGACTTA
*
69771 AAGGCCAGCGACATTGGACTTA
1 AAGGCCAGCGATATTGGACTTA
69793 AAG
1 AAG
69796 ACAAGGTGCC
Statistics
Matches: 32, Mismatches: 9, Indels: 10
0.63 0.18 0.20
Matches are distributed among these distances:
19 5 0.16
20 3 0.09
21 6 0.19
22 9 0.28
23 4 0.12
24 5 0.16
ACGTcount: A:0.31, C:0.18, G:0.28, T:0.24
Consensus pattern (22 bp):
AAGGCCAGCGATATTGGACTTA
Found at i:70802 original size:21 final size:21
Alignment explanation
Indices: 70734--70802 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
70724 GACTTAAAGA
70734 CAAGGTGCCAATATGCTGATT
1 CAAGGTGCCAATATGCTGATT
* **
70755 CAA-G-GCCAGCTATATTAGACTT
1 CAAGGTGCCA-ATATGCT-GA-TT
*
70777 AAAGGTGCCAATATGCTGATT
1 CAAGGTGCCAATATGCTGATT
70798 CAAGG
1 CAAGG
70803 CCAACTACAT
Statistics
Matches: 35, Mismatches: 8, Indels: 10
0.66 0.15 0.19
Matches are distributed among these distances:
19 4 0.11
20 5 0.14
21 11 0.31
22 6 0.17
23 5 0.14
24 4 0.11
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (21 bp):
CAAGGTGCCAATATGCTGATT
Found at i:70964 original size:22 final size:22
Alignment explanation
Indices: 70939--71007 Score: 54
Period size: 22 Copynumber: 3.2 Consensus size: 22
70929 ATGCTGATTC
70939 AAGGCCAACTATATTGGACTTA
1 AAGGCCAACTATATTGGACTTA
* ** *
70961 AAGGTGCCAA-TGTGCT-GA-TTC
1 AA-G-GCCAACTATATTGGACTTA
*
70982 AAGGCCAACTACATTGGACTTA
1 AAGGCCAACTATATTGGACTTA
71004 AAGG
1 AAGG
71008 TAAAGGTGCC
Statistics
Matches: 33, Mismatches: 9, Indels: 10
0.63 0.17 0.19
Matches are distributed among these distances:
19 5 0.15
20 3 0.09
21 6 0.18
22 10 0.30
23 4 0.12
24 5 0.15
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (22 bp):
AAGGCCAACTATATTGGACTTA
Found at i:71186 original size:33 final size:32
Alignment explanation
Indices: 71142--71243 Score: 154
Period size: 32 Copynumber: 3.2 Consensus size: 32
71132 TATATTGGAC
71142 TTAGA-AGGGTTGCCACCAACTTGTGTGGGCT
1 TTAGAGAGGGTTGCCACCAACTTGTGTGGGCT
*
71173 TTAGAGAGTGGTTGCCACCGACTTGTGTGGGCT
1 TTAGAGAG-GGTTGCCACCAACTTGTGTGGGCT
*
71206 TTAGAG-GGGATTGCCACCAACTTATGTGGGCT
1 TTAGAGAGGG-TTGCCACCAACTTGTGTGGGCT
71238 TTAGAG
1 TTAGAG
71244 GAAAAGGATG
Statistics
Matches: 65, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
31 7 0.11
32 29 0.45
33 29 0.45
ACGTcount: A:0.20, C:0.18, G:0.33, T:0.29
Consensus pattern (32 bp):
TTAGAGAGGGTTGCCACCAACTTGTGTGGGCT
Found at i:71267 original size:65 final size:64
Alignment explanation
Indices: 71137--71272 Score: 152
Period size: 65 Copynumber: 2.1 Consensus size: 64
71127 CCAGCTATAT
* ** * * *
71137 TGGAC-TTAGAAGGGTTGCCACCAACTTGTGTGGGCTTTAGAGAGTGGTTGCCACCGACTTGTG
1 TGGACTTTAGAAGGGTTGCCACCAACTTATGTGGGCTTTAGAGAAAGGATGCCACAGACGTGTG
* *
71200 TGGGCTTTAGAGGGGATTGCCACCAACTTATGTGGGCTTTAGAGGAAAAGGATGCCACAGA-GT-
1 TGGACTTTAGAAGGG-TTGCCACCAACTTATGTGGGCTTTAGA-G-AAAGGATGCCACAGACGTG
71263 TG
63 TG
71265 TGGACTTT
1 TGGACTTT
71273 GAAAAGAAAA
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
63 4 0.07
64 8 0.13
65 35 0.58
66 2 0.03
67 11 0.18
ACGTcount: A:0.22, C:0.17, G:0.33, T:0.28
Consensus pattern (64 bp):
TGGACTTTAGAAGGGTTGCCACCAACTTATGTGGGCTTTAGAGAAAGGATGCCACAGACGTGTG
Found at i:71290 original size:34 final size:33
Alignment explanation
Indices: 71245--71765 Score: 400
Period size: 34 Copynumber: 15.8 Consensus size: 33
71235 GCTTTAGAGG
*
71245 AAAAGGATGCCACAGAGTTGTGGACTTTGAAAAGA
1 AAAAGG-TGCCACGGAGTTGTGGACTTT-AAAAGA
* * *
71280 AAAAGGTGCCATGGAGTTATGGAC-TTAGAAGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTA-AAAGA
* *
71313 AAAATAGTGCCACGAAGTTGTAGG-CTTTAAAAAGA
1 AAAA-GGTGCCACGGAGTTGT-GGACTTT-AAAAGA
* * *
71348 AAAAGGTGCGACAGAGTTGTGGAC-TTAGAAGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTA-AAAGA
* * *
71381 ACAAGGATGCCACAGAGTTGTGGACTTAAAAAGGA
1 AAAAGG-TGCCACGGAGTTGTGGACTTTAAAA-GA
* *
71416 ACAAGGATGCCACGGAGTTATGGAC-TTAAAAGGA
1 AAAAGG-TGCCACGGAGTTGTGGACTTTAAAA-GA
* * *
71450 ACAAGGTGCCACGGAGGTGTGGGC-TTAAAAGGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAA--GA
*
71484 AAAAGGGTGCCACGGAG-TGTGGAC-TTAAAAGG
1 AAAA-GGTGCCACGGAGTTGTGGACTTTAAAAGA
71516 AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAA-GA
* **
71550 AAAAGATGCCATAGAGTTGTGGAC-TTAAAAGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAA-GA
* * * *
71583 ACAAGGTGCCATGGAGGTGTGGGC-TTAAAAGGGA
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAA--GA
* *
71617 AAAAGGGTGCCACGGAGTCGTGGAC-CTAAAAG-
1 AAAA-GGTGCCACGGAGTTGTGGACTTTAAAAGA
* *
71649 ----GGTGCCACGGAGTTGTGG-GTTTTAAA-A
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGA
*
71676 AGAA--TGCCACGGAGTTGTGGACTTTGAAAAGA
1 AAAAGGTGCCACGGAGTTGTGGACTTT-AAAAGA
* *
71708 AAAAGGTGCCACGGAGTCGTGGACTTT-GAAG-
1 AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGA
* * *
71739 AAAAGATGCCACTGAGTCGTGGACTTT
1 AAAAGGTGCCACGGAGTTGTGGACTTT
71766 GGAAAGAGAT
Statistics
Matches: 405, Mismatches: 53, Indels: 60
0.78 0.10 0.12
Matches are distributed among these distances:
27 21 0.05
29 16 0.04
30 3 0.01
31 40 0.10
32 21 0.05
33 85 0.21
34 140 0.35
35 78 0.19
36 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.20
Consensus pattern (33 bp):
AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGA
Found at i:71364 original size:102 final size:100
Alignment explanation
Indices: 71245--71764 Score: 468
Period size: 102 Copynumber: 5.3 Consensus size: 100
71235 GCTTTAGAGG
* * *
71245 AAAAGGATGCCACAGAGTTGTGGACTTTGAAAA-GAAAAAGGTGCCATGGAGTTATGGACTTAGA
1 AAAAGG-TGCCACAGAGTTGTGGAC-TT-AAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAA
* * *
71309 AGGAAAAATAGTGCCACGAAGTTGTAGG-CTTTAAAAAGA
63 AGGAAAAA-GGTGCCACGGAGTTGT-GGACTTTAAAAGGA
* * * *
71348 AAAAGGTGCGACAGAGTTGTGGACTTAGAAGGAACAAGGATGCCACAGAGTTGTGGACTTAAAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGG-TGCCACGGAGTTGTGGACTT-AAAA
* *
71413 GGAACAAGGATGCCACGGAGTTATGGAC-TTAAAAGGA
64 GGAAAAAGG-TGCCACGGAGTTGTGGACTTTAAAAGGA
* * * *
71450 ACAAGGTGCCACGGAGGTGTGGGCTTAAAAGGGAAAAAGGGTGCCACGGAG-TGTGGACTTAAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAA-GGAAAAA-GGTGCCACGGAGTTGTGGACTTAAAA
71514 GG-AAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
64 GGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
* * * * * *
71550 AAAAGATGCCATAGAGTTGTGGACTTAAAAGGAACAAGGTGCCATGGAGGTGTGGGCTTAAAAGG
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAAA-G
* *
71615 GAAAAAGGGTGCCACGGAGTCGTGGAC-CTAAAA-G-
65 GAAAAA-GGTGCCACGGAGTTGTGGACTTTAAAAGGA
* ** * *
71649 ----GGTGCCACGGAGTTGTGGGTTTTAAA--AAGAA--TGCCACGGAGTTGTGGACTTTGAAAA
1 AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGAC-TT-AAAA
* *
71706 -GAAAAAGGTGCCACGGAGTCGTGGACTTT-GAA-G-
64 GGAAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
* * *
71739 AAAAGATGCCACTGAGTCGTGGACTT
1 AAAAGGTGCCACAGAGTTGTGGACTT
71765 TGGAAAGAGA
Statistics
Matches: 348, Mismatches: 50, Indels: 47
0.78 0.11 0.11
Matches are distributed among these distances:
90 23 0.07
91 22 0.06
92 2 0.01
93 8 0.02
94 17 0.05
95 20 0.06
98 11 0.03
99 35 0.10
100 44 0.13
101 24 0.07
102 97 0.28
103 43 0.12
104 2 0.01
ACGTcount: A:0.35, C:0.13, G:0.33, T:0.19
Consensus pattern (100 bp):
AAAAGGTGCCACAGAGTTGTGGACTTAAAAGGAAAAAGGTGCCACGGAGTTGTGGACTTAAAAGG
AAAAAGGTGCCACGGAGTTGTGGACTTTAAAAGGA
Found at i:71705 original size:29 final size:29
Alignment explanation
Indices: 71624--71824 Score: 129
Period size: 30 Copynumber: 6.7 Consensus size: 29
71614 GGAAAAAGGG
* **
71624 TGCCACGGAGTCGTGGAC-CT-AAAAGGG
1 TGCCACGGAGTCGTGGACTTTGAAAAGAA
* ** *
71651 TGCCACGGAGTTGTGGGTTTTAAAAAGAA
1 TGCCACGGAGTCGTGGACTTTGAAAAGAA
*
71680 TGCCACGGAGTTGTGGACTTTGAAAAGAAAAA
1 TGCCACGGAGTCGTGGACTTTGAAAAG---AA
*
71712 GGTGCCACGGAGTCGTGGACTTTGAAGAAAAGA
1 --TGCCACGGAGTCGTGGACTTTGAA-AAGA-A
* *
71745 TGCCACTGAGTCGTGGACTTTGGAAAGAGA
1 TGCCACGGAGTCGTGGACTTTGAAAAGA-A
* * * *
71775 TGCCACTGAATTGTGGATTTTGAGACAAG-A
1 TGCCACGGAGTCGTGGACTTTGA-A-AAGAA
* **
71805 TGTCACTAAGTCGTGGACTT
1 TGCCACGGAGTCGTGGACTT
71825 AAAAAAGAGA
Statistics
Matches: 140, Mismatches: 23, Indels: 19
0.77 0.13 0.10
Matches are distributed among these distances:
27 15 0.11
28 1 0.01
29 29 0.21
30 40 0.29
31 23 0.16
32 6 0.04
33 1 0.01
34 23 0.16
35 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.31, T:0.24
Consensus pattern (29 bp):
TGCCACGGAGTCGTGGACTTTGAAAAGAA
Found at i:71762 original size:65 final size:63
Alignment explanation
Indices: 71644--71772 Score: 161
Period size: 65 Copynumber: 2.0 Consensus size: 63
71634 TCGTGGACCT
* * * * *
71644 AAAAGGGTGCCACGGAGTTGTGGGTTTTAAAAAGAATGCCACGGAGTTGTGGACTTTGAAAAG
1 AAAAAGGTGCCACGGAGTCGTGGCTTTAAAAAAGAATGCCACGGAGTCGTGGACTTTGAAAAG
* *
71707 AAAAAGGTGCCACGGAGTCGTGGACTTTGAAGAAAAG-ATGCCACTGAGTCGTGGACTTTGGAAA
1 AAAAAGGTGCCACGGAGTCGTGG-CTTT-AA-AAAAGAATGCCACGGAGTCGTGGACTTTGAAAA
71771 G
63 G
71772 A
1 A
71773 GATGCCACTG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
63 21 0.38
64 3 0.05
65 27 0.48
66 5 0.09
ACGTcount: A:0.33, C:0.13, G:0.33, T:0.22
Consensus pattern (63 bp):
AAAAAGGTGCCACGGAGTCGTGGCTTTAAAAAAGAATGCCACGGAGTCGTGGACTTTGAAAAG
Found at i:71778 original size:30 final size:30
Alignment explanation
Indices: 71673--71824 Score: 144
Period size: 30 Copynumber: 4.9 Consensus size: 30
71663 GTGGGTTTTA
* *
71673 AAAAGAATGCCACGGAGTTGTGGACTTTGAAAAG
1 AAAAG-ATGCCACTGAGTCGTGGACTTTG---AG
* *
71707 AAAAAGGTGCCACGGAGTCGTGGACTTTGAAG
1 -AAAAGATGCCACTGAGTCGTGGACTTTG-AG
71739 AAAAGATGCCACTGAGTCGTGGACTTTG-G
1 AAAAGATGCCACTGAGTCGTGGACTTTGAG
* * *
71768 AAAGAGATGCCACTGAATTGTGGATTTTGAG
1 AAA-AGATGCCACTGAGTCGTGGACTTTGAG
* * *
71799 ACAAGATGTCACTAAGTCGTGGACTT
1 AAAAGATGCCACTGAGTCGTGGACTT
71825 AAAAAAGAGA
Statistics
Matches: 102, Mismatches: 13, Indels: 9
0.82 0.10 0.07
Matches are distributed among these distances:
29 4 0.04
30 40 0.39
31 29 0.28
32 3 0.03
34 21 0.21
35 5 0.05
ACGTcount: A:0.32, C:0.14, G:0.30, T:0.24
Consensus pattern (30 bp):
AAAAGATGCCACTGAGTCGTGGACTTTGAG
Found at i:72861 original size:15 final size:16
Alignment explanation
Indices: 72836--72870 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
72826 CTCACCAAAA
*
72836 TTTTCTGTTTTGTTTT
1 TTTTCTGTTTTCTTTT
72852 TTTTCT-TTTTCTTTT
1 TTTTCTGTTTTCTTTT
72867 TTTT
1 TTTT
72871 TGTGTTTGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.67
16 6 0.33
ACGTcount: A:0.00, C:0.09, G:0.06, T:0.86
Consensus pattern (16 bp):
TTTTCTGTTTTCTTTT
Found at i:80131 original size:52 final size:52
Alignment explanation
Indices: 79982--80110 Score: 222
Period size: 52 Copynumber: 2.5 Consensus size: 52
79972 CGAAATATGA
*
79982 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
* * *
80034 AAATTTGCCTGTATGTATCGATATATTTTATAGTGTATCGATACATCTAGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
80086 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
80111 AAGATCAGTG
Statistics
Matches: 71, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 71 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAGGC
Found at i:80210 original size:13 final size:13
Alignment explanation
Indices: 80192--80216 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80182 ACAAAACTTA
80192 TGTATCGATACAG
1 TGTATCGATACAG
80205 TGTATCGATACA
1 TGTATCGATACA
80217 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:80214 original size:32 final size:33
Alignment explanation
Indices: 80168--80236 Score: 113
Period size: 32 Copynumber: 2.1 Consensus size: 33
80158 GGCAGTAGCT
*
80168 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACAGTGTATCGATACAAAACTTTATGTATCGA
*
80200 TACAGTGTATCGATACAACACTTTATGTATCGA
1 TACAGTGTATCGATACAAAACTTTATGTATCGA
80233 TACA
1 TACA
80237 AATCGTTGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
32 19 0.56
33 15 0.44
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.33
Consensus pattern (33 bp):
TACAGTGTATCGATACAAAACTTTATGTATCGA
Found at i:83109 original size:18 final size:18
Alignment explanation
Indices: 83086--83132 Score: 78
Period size: 18 Copynumber: 2.7 Consensus size: 18
83076 GCTTGGCTAT
83086 TTATTTTTATGTCATTTA
1 TTATTTTTATGTCATTTA
83104 TTATTTTTATGTCATTTA
1 TTATTTTTATGTCATTTA
*
83122 TT-TTTCTATGT
1 TTATTTTTATGT
83133 TATGTCATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (18 bp):
TTATTTTTATGTCATTTA
Found at i:87151 original size:40 final size:40
Alignment explanation
Indices: 87070--87161 Score: 116
Period size: 40 Copynumber: 2.3 Consensus size: 40
87060 CACAATTTGC
* *
87070 ATCGATACATTTTGCATTGTATCGATACATTGCTCATTGT
1 ATCGATACATTCTGCATTGTATCGATACATTGCTCAATGT
*
87110 ATCGATACATTACT-CATTGTATCGATACATT-TTACAATGT
1 ATCGATACATT-CTGCATTGTATCGATACATTGCT-CAATGT
*
87150 ATCGATATATTC
1 ATCGATACATTC
87162 AGGCATTTTT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
39 2 0.04
40 43 0.93
41 1 0.02
ACGTcount: A:0.29, C:0.17, G:0.12, T:0.41
Consensus pattern (40 bp):
ATCGATACATTCTGCATTGTATCGATACATTGCTCAATGT
Found at i:87156 original size:20 final size:20
Alignment explanation
Indices: 87070--87140 Score: 108
Period size: 20 Copynumber: 3.5 Consensus size: 20
87060 CACAATTTGC
*
87070 ATCGATACATT-TTGCATTGT
1 ATCGATACATTACT-CATTGT
*
87090 ATCGATACATTGCTCATTGT
1 ATCGATACATTACTCATTGT
87110 ATCGATACATTACTCATTGT
1 ATCGATACATTACTCATTGT
87130 ATCGATACATT
1 ATCGATACATT
87141 TTACAATGTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
20 47 0.98
21 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.13, T:0.41
Consensus pattern (20 bp):
ATCGATACATTACTCATTGT
Found at i:89535 original size:51 final size:51
Alignment explanation
Indices: 89504--89623 Score: 134
Period size: 51 Copynumber: 2.4 Consensus size: 51
89494 AATTTTTCTT
* * *
89504 AATCG-GGAATACTCCAACTCCGATTTTATTTCTAAAGCATCGATTTACCGC
1 AATCGAGG-ATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTACCGC
* * ** *
89555 AATCGAGGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTTCAC
1 AATCGAGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTACCGC
* *
89606 AATTGGGGATACTCCAAC
1 AATCGAGGATACTCCAAC
89624 CCATTATTTC
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 56 0.97
52 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.12, T:0.31
Consensus pattern (51 bp):
AATCGAGGATACTCCAACTCCGATTTTATTTCCAAAACATCAATTTACCGC
Found at i:89671 original size:28 final size:26
Alignment explanation
Indices: 89610--89680 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 26
89600 TTTCACAATT
89610 GGGGATACTCCAACCCATTATTTCATC
1 GGGGATACTCCAACCCATTATTTCA-C
*
89637 GGGGATACTCCAACCTCGTTATTTC-C
1 GGGGATACTCCAACC-CATTATTTCAC
89663 GAGGAGATACTCCAACCC
1 G-GG-GATACTCCAACCC
89681 CGGCTTTATA
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
26 2 0.05
27 18 0.45
28 20 0.50
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (26 bp):
GGGGATACTCCAACCCATTATTTCAC
Found at i:89754 original size:28 final size:27
Alignment explanation
Indices: 89715--89790 Score: 93
Period size: 28 Copynumber: 2.7 Consensus size: 27
89705 TTTTTTCATA
*
89715 ATCGGGGGTACTCCAACCTCGTTATTT
1 ATCGGGGATACTCCAACCTCGTTATTT
89742 CATCGGGGATACTCCAATCC-CGTTATTT
1 -ATCGGGGATACTCCAA-CCTCGTTATTT
89770 -TCGAGGGAATACTCCAACCTC
1 ATCG-GGG-ATACTCCAACCTC
89791 AGCTTTATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
26 3 0.07
27 5 0.12
28 33 0.77
29 2 0.05
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCTCGTTATTT
Found at i:89867 original size:107 final size:109
Alignment explanation
Indices: 89596--89889 Score: 418
Period size: 107 Copynumber: 2.7 Consensus size: 109
89586 TCAAAACACC
* * * *
89596 AATTTTTCACAATTGGGGATACTCCAA-CCCATTATTTCATCGGGGATACTCCAA-CCTCGTTAT
1 AATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCC-CGTTAT
* * *
89659 TTCCGA-GGAGATACTCCAACCCCGGCTTTATATCTAAAAATGTTG
65 TTTCGAGGGA-ATACTCCAACCCCAGCTTTATATCTAAAAATATTG
** *
89704 TTTTTTTCATAATCGGGGGTACTCCAACCTCGTTATTTCATCGGGGATACTCCAATCCCGTTATT
1 AATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTATT
*
89769 TTCGAGGGAATACTCCAACCTCAGCTTTATATCT-AAAATATT-
66 TTCGAGGGAATACTCCAACCCCAGCTTTATATCTAAAAATATTG
*
89811 AATTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATACTCCAATCCCGTTATT
1 AATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTATT
*
89876 TTCGAGGGGATACT
66 TTCGAGGGAATACT
89890 TAAACCCCGA
Statistics
Matches: 167, Mismatches: 16, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
107 74 0.44
108 29 0.17
109 59 0.35
110 5 0.03
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.33
Consensus pattern (109 bp):
AATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAATCCCGTTATT
TTCGAGGGAATACTCCAACCCCAGCTTTATATCTAAAAATATTG
Found at i:89968 original size:107 final size:107
Alignment explanation
Indices: 89561--89956 Score: 406
Period size: 107 Copynumber: 3.7 Consensus size: 107
89551 CCGCAATCGA
* * * * *
89561 GGATACTCCAACTCCGATTTTATTTTCAAAACACCAATTTTTCACAATTGGGGATACTCCAA-CC
1 GGATACTCCAACCCCGACTTTATATCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
* *
89625 CATTATTTCATCGGGGATACTCCAA-CCTCGTTATTTCCGAGG
66 CGTTATTTCATCGGGGATACTCCAATCC-CGTTATTTTCGAGG
* * * **** * *
89667 AGATACTCCAACCCCGGCTTTATATCTAAAA-ATGTTGTTTTTTTCATAATCGGGGGTACTCCAA
1 GGATACTCCAACCCCGACTTTATATCCAAAACA---CCAATTTTTCACAATCGGGGATACTCCAA
*
89731 CCTCGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGG
63 CCCCGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGG
* * * * ** * *
89776 GAATACTCCAACCTC-AGCTTTATATCTAAAATATTAATTTTTCATAATCGGGGGTACTCCAACC
1 GGATACTCCAACCCCGA-CTTTATATCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
*
89840 CCGTTATGTCATCGGGGATACTCCAATCCCGTTATTTTCGAGG
65 CCGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGG
** * * * *
89883 GGATACTTAAACCCCGATTTTAT-TCCCAAAACACCAGTTTTTTACAATCGGGGATACTCCAATC
1 GGATACTCCAACCCCGACTTTATAT-CCAAAACACCAATTTTTCACAATCGGGGATACTCCAACC
*
89947 TCGTTATTTC
65 CCGTTATTTC
89957 CAAGGGGATA
Statistics
Matches: 239, Mismatches: 42, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
105 1 0.00
106 25 0.10
107 123 0.51
108 23 0.10
109 64 0.27
110 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (107 bp):
GGATACTCCAACCCCGACTTTATATCCAAAACACCAATTTTTCACAATCGGGGATACTCCAACCC
CGTTATTTCATCGGGGATACTCCAATCCCGTTATTTTCGAGG
Found at i:89981 original size:79 final size:79
Alignment explanation
Indices: 89850--90041 Score: 249
Period size: 79 Copynumber: 2.4 Consensus size: 79
89840 CCGTTATGTC
* *
89850 ATCGGGGATACTCCAATCCCGTTATTTTCGAGGGGATACTTAAACCCCGATTTTATTCCCAAAAC
1 ATCGGGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTAAACCCCGATTTTATTCCCAAAAC
* *
89915 ACCAGTTTTTTACA
66 ACCAATTTTCTACA
* * * * *
89929 ATCGGGGATACTCCAATCTCGTTATTTCCAAGGGGATACTTCAACCCCGATTTTATTTCTAAAAT
1 ATCGGGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTAAACCCCGATTTTATTCCCAAAAC
89994 ACCAATTTTCTACA
66 ACCAATTTTCTACA
* * *
90008 ATCGGAGATATTCCAACTCCGGTTTTATTTCCAA
1 ATCGGGGATACTCCAA-TCCCG--TTATTTCCAA
90042 AACACCAATT
Statistics
Matches: 97, Mismatches: 13, Indels: 3
0.86 0.12 0.03
Matches are distributed among these distances:
79 84 0.87
80 3 0.03
82 10 0.10
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.33
Consensus pattern (79 bp):
ATCGGGGATACTCCAATCCCGTTATTTCCAAGGGGATACTTAAACCCCGATTTTATTCCCAAAAC
ACCAATTTTCTACA
Found at i:90049 original size:51 final size:51
Alignment explanation
Indices: 89963--90077 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 51
89953 TTTCCAAGGG
* * *
89963 GATACTTCAACCCCGATTTTATTTCTAAAATACCAA-TTTTCTACAATCGGA
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTC-ACAATCGGA
* * * *
90014 GATATTCCAACTCCGGTTTTATTTCCAAAACACCAATTTTTCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGA
90065 GATACTCCAACCC
1 GATACTCCAACCC
90078 TATTATTTTC
Statistics
Matches: 54, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 49 0.91
52 5 0.09
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTTTCACAATCGGA
Found at i:96359 original size:60 final size:60
Alignment explanation
Indices: 96248--96570 Score: 444
Period size: 60 Copynumber: 5.4 Consensus size: 60
96238 TAGCCCTTCC
* * * *
96248 AGTCCTCAAAGATCATGACGCTTTTTTCTTTTCAAAGCCCACA-AGAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTT-AAAGCCCACACA-AGTTGGTGGCACCTTT
96309 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
96369 AGTCCTCAAAGAGCAGGACGC-----CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
1 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
* * * *
96424 AGTCCTCAAAGAGCATGATGCCTTTTCCTTTTAAAGCCCACATAAGTTGGTGGCACCCTTT
1 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCA-CCTTT
* * * *
96485 AGTCCTCAAAGAGCAGGACGCCTTATCC-TTCAAAGCCCACACAAGTTGGTGGCACCTCCT
1 AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCT-TT
96545 AGTCCTCAAAGAGCAGGACGCATTTT
1 AGTCCTCAAAGAGCAGGACGCATTTT
96571 ATTTTCCTCT
Statistics
Matches: 237, Mismatches: 17, Indels: 17
0.87 0.06 0.06
Matches are distributed among these distances:
55 52 0.22
59 3 0.01
60 123 0.52
61 59 0.25
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (60 bp):
AGTCCTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:96456 original size:115 final size:116
Alignment explanation
Indices: 96275--96570 Score: 470
Period size: 115 Copynumber: 2.5 Consensus size: 116
96265 ACGCTTTTTT
*
96275 CTTTTCAAAGCCCACA-AGAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCATTTTCCTT
1 CTTTTTAAAGCCCACACA-AGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCATTTTCCTT
96339 TTAAAGCCCACACAAGTTGGTGGCA-CCTTTAGTCCTCAAAGAGCAGGACGC
65 TTAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC
* * *
96390 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCATGATGCCTTTTCCTTT
1 CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCATTTTCCTTT
*
96455 TAAAGCCCACATAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC
66 TAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC
*
96506 CTTATCCTTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCTCAAAGAGCAGGACGCATTTT
1 CTT-T--TT-AAAGCCCACACAAGTTGGTGGCACCT-TTAGTCCTCAAAGAGCAGGACGCATTTT
96571 ATTTTCCTCT
Statistics
Matches: 165, Mismatches: 9, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
115 82 0.50
116 30 0.18
117 1 0.01
119 2 0.01
120 26 0.16
121 24 0.15
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (116 bp):
CTTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAAAGAGCAGGACGCATTTTCCTTT
TAAAGCCCACACAAGTTGGTGGCACCCTTTAGTCCTCAAAGAGCAGGACGC
Found at i:96554 original size:176 final size:176
Alignment explanation
Indices: 96248--96570 Score: 517
Period size: 176 Copynumber: 1.8 Consensus size: 176
96238 TAGCCCTTCC
* * *
96248 AGTCCTCAAAGATCATGACGCTTTTTTCTTTTCAAAGCCCACAAGAGTTGGTGGCACCTTTAGTC
1 AGTCCTCAAAGAGCATGACGCCTTTTCCTTTTCAAAGCCCACAAGAGTTGGTGGCACCTTTAGTC
* * *
96313 CTCAAAGAGCAGGACGCATTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACCTTTAGTCCTCAA
66 CTCAAAGAGCAGGACGCATTATCCTTTCAAAGCCCACACAAGTTGGTGGCACCTCTAGTCCTCAA
*
96378 AGAGCAGGACGCCTTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
131 AGAGCAGGACGCATTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
*
96424 AGTCCTCAAAGAGCATGATGCCTTTTCCTTTT-AAAGCCCACATA-AGTTGGTGGCACCCTTTAG
1 AGTCCTCAAAGAGCATGACGCCTTTTCCTTTTCAAAGCCCACA-AGAGTTGGTGGCA-CCTTTAG
*
96487 TCCTCAAAGAGCAGGACGCCTTATCC-TTCAAAGCCCACACAAGTTGGTGGCACCTCCTAGTCCT
64 TCCTCAAAGAGCAGGACGCATTATCCTTTCAAAGCCCACACAAGTTGGTGGCACCT-CTAGTCCT
96551 CAAAGAGCAGGACGCATTTT
128 CAAAGAGCAGGACGCATTTT
96571 ATTTTCCTCT
Statistics
Matches: 135, Mismatches: 9, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
175 49 0.36
176 86 0.64
ACGTcount: A:0.26, C:0.27, G:0.20, T:0.27
Consensus pattern (176 bp):
AGTCCTCAAAGAGCATGACGCCTTTTCCTTTTCAAAGCCCACAAGAGTTGGTGGCACCTTTAGTC
CTCAAAGAGCAGGACGCATTATCCTTTCAAAGCCCACACAAGTTGGTGGCACCTCTAGTCCTCAA
AGAGCAGGACGCATTTTTAAAGCCCACACAAGTTGGTGGCACCTTT
Found at i:96607 original size:43 final size:43
Alignment explanation
Indices: 96546--96737 Score: 251
Period size: 43 Copynumber: 4.4 Consensus size: 43
96536 GCACCTCCTA
* *
96546 GTCCTCAAAGAGCAGGACGCATTTTATTTTCCTCTTCCCCCTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCTTT
* *
96589 GTCCTCAAAGAGCAGGACGCACTTCA-TTTCCTTCTTTTCCCTTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCC-TC--TTCCCCTTT
* *
96634 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCTTT
* * *
96677 ATCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTT
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCTTT
* *
96720 GTCCTAAAAAAGCAGGAC
1 GTCCTCAAAGAGCAGGAC
96738 ACGTTCCATC
Statistics
Matches: 133, Mismatches: 12, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
42 5 0.04
43 90 0.68
45 33 0.25
46 5 0.04
ACGTcount: A:0.21, C:0.29, G:0.14, T:0.35
Consensus pattern (43 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCTTT
Found at i:96662 original size:88 final size:88
Alignment explanation
Indices: 96546--96810 Score: 299
Period size: 88 Copynumber: 3.0 Consensus size: 88
96536 GCACCTCCTA
* * *
96546 GTCCTCAAAGAGCAGGACGCATTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCAC
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCCTCAAAGAGCAGGACGCAC
96611 TTCATTTCCTTCTTTTCCCTTTT
66 TTCATTTCCTTCTTTTCCCTTTT
* *
96634 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTATCCTCAAAGAGCAGGACGCAC
1 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCCTCAAAGAGCAGGACGCAC
* *
96699 TTTATTT--TCCTTTTCTCC-TTT
66 TTCATTTCCTTCTTTTC-CCTTTT
* * * * * *
96720 GTCCTAAAAAAGCAGGA--CACGTTCCATCCCCTT-CTTTTCTCCTTTTGTCCTCAAAGAGTAGG
1 GTCCTCAAAGAGCAGGACGCAC-TT-TAT---TTTCCTTTTC-CCCTTTGTCCTCAAAGAGCAGG
*
96782 ACGCACTTCATTTCCTTCTTTTCTCTTTT
60 ACGCACTTCATTTCCTTCTTTTCCCTTTT
96811 AAAGCCCACA
Statistics
Matches: 149, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
84 3 0.02
85 2 0.01
86 27 0.18
87 2 0.01
88 72 0.48
89 32 0.21
90 1 0.01
91 10 0.07
ACGTcount: A:0.19, C:0.30, G:0.13, T:0.38
Consensus pattern (88 bp):
GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCCCCTTTGTCCTCAAAGAGCAGGACGCAC
TTCATTTCCTTCTTTTCCCTTTT
Found at i:96796 original size:131 final size:130
Alignment explanation
Indices: 96547--96798 Score: 364
Period size: 131 Copynumber: 1.9 Consensus size: 130
96537 CACCTCCTAG
* * *
96547 TCCTCAAAGAGCAGGACGCATTTTATTTTCCTCTTCCCCCTTGTCCTCAAAGAGCAGGACGCACT
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTAAAAAAGCAGGAC-CACT
** *
96612 TCATTTCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTT
65 TCATCCCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCCTTT
96677 A
130 A
* * *
96678 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTTTTCTCCTTTGTCCTAAAAAAGCAGGA-CACGT
1 TCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTAAAAAAGCAGGACCAC-T
*
96742 TCCATCCCCTTCTTTTCTCCTTTTGTCCTCAAAGAGTAGGACGCACTTCA-TTTCCTT
65 T-CATCCCCTTCTTTTC-CCTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTT
96799 CTTTTCTCTT
Statistics
Matches: 108, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
129 3 0.03
130 2 0.02
131 73 0.68
132 30 0.28
ACGTcount: A:0.20, C:0.30, G:0.13, T:0.37
Consensus pattern (130 bp):
TCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTCCCCCTTGTCCTAAAAAAGCAGGACCACTT
CATCCCCTTCTTTTCCCTTTTGTCCTCAAAGAGCAGGACGCACTTCATTTTCCTTTTCTCCTTTA
Found at i:97159 original size:122 final size:122
Alignment explanation
Indices: 96962--97193 Score: 308
Period size: 122 Copynumber: 1.9 Consensus size: 122
96952 AGCAGGACGC
* *
96962 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACACCTTTTCCTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAGGACACCTTTTCCTT
* **
97027 TCAAAACCCACATAAGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGCATGATGCTTTCT
66 TCAAAACCCACACAAGTTGGTAACACTTTTT-AGTCCTCAAAGAGCATGATGCTTTCT
* * * *
97084 CTTTGTAAAGCCCACACAAGTTGGTGGCAC-CTTCTAGTCCTCAAATAGCGGGACGCC-TTTCTT
1 CTTT-TAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAGGACACCTTTTC-C
* * *
97147 TTTCAAAGCCCACACGAGTTGGTAACACTTTTTAGTCCTTAAAGAGC
64 TTTCAAAACCCACACAAGTTGGTAACACTTTTTAGTCCTCAAAGAGC
97194 GGGATGCACT
Statistics
Matches: 95, Mismatches: 12, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
121 4 0.04
122 61 0.64
123 30 0.32
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (122 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTCTTCTAGTCCTCAAAGAGCAGGACACCTTTTCCTT
TCAAAACCCACACAAGTTGGTAACACTTTTTAGTCCTCAAAGAGCATGATGCTTTCT
Found at i:97197 original size:61 final size:61
Alignment explanation
Indices: 96962--97193 Score: 256
Period size: 61 Copynumber: 3.8 Consensus size: 61
96952 AGCAGGACGC
* *
96962 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCTAGTCCTCAAAGAGTAGGACACCTTT-T
1 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-TAGTCCTCAAAGAGCAGGACGCCTTTCT
* * * * *
97023 CCTTTCAAAACCCACATAAGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGCATGATG-CTTTCT
1 -CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTT-AGTCCTCAAAGAGCAGGACGCCTTTCT
* * * *
97084 CTTTGTAAAGCCCACACAAGTTGGTGGCACCTTCTAGTCCTCAAATAGCGGGACGCCTTTCT
1 CTTT-TAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTCT
* ** *
97146 -TTTTCAAAGCCCACACGAGTTGGTAACACTTTTTAGTCCTTAAAGAGC
1 CTTTT-AAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGC
97194 GGGATGCACT
Statistics
Matches: 141, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
60 10 0.07
61 97 0.69
62 34 0.24
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (61 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTTAGTCCTCAAAGAGCAGGACGCCTTTCT
Found at i:97246 original size:42 final size:42
Alignment explanation
Indices: 97181--97319 Score: 172
Period size: 42 Copynumber: 3.3 Consensus size: 42
97171 ACACTTTTTA
* *
97181 GTCCTTAAAGAGCGGGATGCACTTTATTTTCCTCTTTCCTTT
1 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCCTTT
* * * *
97223 GTCCTCAAAGAGCAGGATACACTTCA-TTCCCATTTTTCTCTTTT
1 GTCCTCAAAGAGCAGGATGCACTTTATTTTCC-TCTTTC-C-TTT
* *
97267 GTCCTCAAAGAGCAGGACGCACTTTATTTTCCTCTTTCTTTT
1 GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCCTTT
97309 GTCCTCAAAGA
1 GTCCTCAAAGA
97320 ACATGACGCA
Statistics
Matches: 81, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
41 4 0.05
42 41 0.51
43 1 0.01
44 31 0.38
45 4 0.05
ACGTcount: A:0.21, C:0.26, G:0.14, T:0.39
Consensus pattern (42 bp):
GTCCTCAAAGAGCAGGATGCACTTTATTTTCCTCTTTCCTTT
Found at i:97472 original size:40 final size:41
Alignment explanation
Indices: 97373--97474 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
97363 GCAAGACGTA
* * **
97373 CTCTTTTCACTTTGTCCTCAAGAAGCAGGACACTTTTTTTTT
1 CTCTTTTC-CTTTGTCCTCAAGAAGCAAGACACTATTTCGTT
* * *
97415 CTTTTTTCCTTTTTCCTCAAGGAGCAAGAC-CTATTTCGTT
1 CTCTTTTCCTTTGTCCTCAAGAAGCAAGACACTATTTCGTT
*
97455 CTCTATTCCTTTGTCCTCAA
1 CTCTTTTCCTTTGTCCTCAA
97475 AAAGTGGTGT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
40 24 0.48
41 19 0.38
42 7 0.14
ACGTcount: A:0.18, C:0.26, G:0.11, T:0.45
Consensus pattern (41 bp):
CTCTTTTCCTTTGTCCTCAAGAAGCAAGACACTATTTCGTT
Found at i:97811 original size:13 final size:13
Alignment explanation
Indices: 97793--97817 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97783 ACATAAGTGT
97793 TGTATCGATACAG
1 TGTATCGATACAG
97806 TGTATCGATACA
1 TGTATCGATACA
97818 TCGATCGTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAG
Found at i:97837 original size:33 final size:32
Alignment explanation
Indices: 97774--97837 Score: 85
Period size: 32 Copynumber: 2.0 Consensus size: 32
97764 AAACAGTAAA
*
97774 TGTATCGATACATAAGTGTTGTATCGATACAG
1 TGTATCGATACATAAGTGTTATATCGATACAG
*
97806 TGTATCGATACAT-CGATCGTTATATCGATACA
1 TGTATCGATACATAAG-T-GTTATATCGATACA
97838 TCTAGGAAGT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 1 0.04
32 14 0.50
33 13 0.46
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTATATCGATACAG
Found at i:97882 original size:20 final size:19
Alignment explanation
Indices: 97857--97929 Score: 83
Period size: 20 Copynumber: 3.7 Consensus size: 19
97847 TTTACCCAGA
97857 TGTATCGATACATTTTGCAT
1 TGTATCGATACATTTT-CAT
* **
97877 TGTATCGATATATGCTCAT
1 TGTATCGATACATTTTCAT
*
97896 TGTATCGATACATTTTACAA
1 TGTATCGATACATTTT-CAT
*
97916 TGTATCAATACATT
1 TGTATCGATACATT
97930 CAGGCATTTT
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
19 16 0.36
20 28 0.64
ACGTcount: A:0.30, C:0.15, G:0.12, T:0.42
Consensus pattern (19 bp):
TGTATCGATACATTTTCAT
Found at i:100136 original size:51 final size:51
Alignment explanation
Indices: 100081--100200 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
100071 AATTTTTCCT
*
100081 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAGCA-TCGATTTACCAC
1 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACT-GATTTACCAC
* * * * *
100132 AATCGGGGATACTCCAGCTCCGATTTTATTTTTAAAACACTGATTTTCTAT
1 AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTGATTTACCAC
*
100183 AATCAGGGATACTCCAAC
1 AATCGGGGATACTCCAAC
100201 CCCGTTATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
51 59 0.98
52 1 0.02
ACGTcount: A:0.30, C:0.23, G:0.14, T:0.33
Consensus pattern (51 bp):
AATCGGGGATACTCCAACTCCGATTTTATTTCTAAAACACTGATTTACCAC
Found at i:100312 original size:27 final size:28
Alignment explanation
Indices: 100273--100340 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 28
100263 TAATCGGGGG
* *
100273 TACTCTAACCCCGTTATTTCAGCGGG-A
1 TACTCCAACCCCGTTATTTCAGAGGGAA
* *
100300 TACTCCAATCCCGTTATTTCTGAGGGAA
1 TACTCCAACCCCGTTATTTCAGAGGGAA
100328 TACTCCAACCCCG
1 TACTCCAACCCCG
100341 ATTTTATTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
27 22 0.63
28 13 0.37
ACGTcount: A:0.24, C:0.32, G:0.16, T:0.28
Consensus pattern (28 bp):
TACTCCAACCCCGTTATTTCAGAGGGAA
Found at i:100387 original size:51 final size:51
Alignment explanation
Indices: 100327--100441 Score: 194
Period size: 51 Copynumber: 2.3 Consensus size: 51
100317 TTCTGAGGGA
* * *
100327 ATACTCCAACCCCGATTTTATTTCTAAAATACCAATTTTTCACAATCGGGG
1 ATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGG
*
100378 ATACTCCAACTCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGG
1 ATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGG
100429 ATACTCCAACCCC
1 ATACTCCAACCCC
100442 ATTATTTACG
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 59 1.00
ACGTcount: A:0.31, C:0.30, G:0.09, T:0.30
Consensus pattern (51 bp):
ATACTCCAACCCCGATTTTATTTCCAAAACACCAATTTCTCACAATCGGGG
Found at i:100456 original size:79 final size:78
Alignment explanation
Indices: 100373--100592 Score: 273
Period size: 79 Copynumber: 2.8 Consensus size: 78
100363 TTTTCACAAT
*
100373 CGGGGATACTCCAACTCCGATTTTATTTCCAAAACACCAA-TTTCTCACAATCGGGGATACTCCA
1 CGGGGATACTCCAAC-CCGATTTTATTTCCAAAACACCAATTTTCT-ATAATCGGGGATACTCCA
100437 ACCCCATTATTTAC-G
64 ACCCCATTATTT-CTG
* * * * * *
100452 CGGGGATACTCCAACCCCGATTTTATTTTCAAAATATCGATTTTCTATAATCAGGGATAGTCCAA
1 CGGGGATACTCCAA-CCCGATTTTATTTCCAAAACACCAATTTTCTATAATCGGGGATACTCCAA
*
100517 CCCTATTATTTCTG
65 CCCCATTATTTCTG
* ***
100531 AGGGGATACTCCAACCTCGATTTTATTTCTGGAACACCAATTTTCTATAATCGGGGATACTC
1 CGGGGATACTCCAACC-CGATTTTATTTCCAAAACACCAATTTTCTATAATCGGGGATACTC
100593 TAGCCCCGTT
Statistics
Matches: 119, Mismatches: 18, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
78 3 0.03
79 110 0.92
80 6 0.05
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.32
Consensus pattern (78 bp):
CGGGGATACTCCAACCCGATTTTATTTCCAAAACACCAATTTTCTATAATCGGGGATACTCCAAC
CCCATTATTTCTG
Found at i:102192 original size:20 final size:20
Alignment explanation
Indices: 102167--102343 Score: 147
Period size: 20 Copynumber: 8.8 Consensus size: 20
102157 TTTTCACAAT
102167 TTGTATCGATACATTGTTCA
1 TTGTATCGATACATTGTTCA
*
102187 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
102207 TTGTATCGATACATTCTGGGTTTACCCA
1 TTGTATCGATACA-T-T--G-TT---CA
*
102235 GATGTATCGATACATT-TTGCA
1 -TTGTATCGATACATTGTT-CA
*
102256 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
102276 TTGTATCGAT--A-----CA
1 TTGTATCGATACATTGTTCA
*
102289 TTGTATCGATACATTGCTCA
1 TTGTATCGATACATTGTTCA
102309 TTGTATCGATACATT-TTACA
1 TTGTATCGATACATTGTT-CA
*
102329 ATGTATCGATACATT
1 TTGTATCGATACATT
102344 CAGGCATTTT
Statistics
Matches: 131, Mismatches: 8, Indels: 36
0.75 0.05 0.21
Matches are distributed among these distances:
13 12 0.09
15 1 0.01
18 1 0.01
19 1 0.01
20 91 0.69
21 4 0.03
22 1 0.01
23 2 0.02
24 1 0.01
25 1 0.01
27 1 0.01
28 3 0.02
29 12 0.09
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.41
Consensus pattern (20 bp):
TTGTATCGATACATTGTTCA
Found at i:102296 original size:33 final size:33
Alignment explanation
Indices: 102254--102323 Score: 140
Period size: 33 Copynumber: 2.1 Consensus size: 33
102244 ATACATTTTG
102254 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
102287 CATTGTATCGATACATTGCTCATTGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATA
102320 CATT
1 CATT
102324 TTACAATGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.27, C:0.19, G:0.14, T:0.40
Consensus pattern (33 bp):
CATTGTATCGATACATTGCTCATTGTATCGATA
Found at i:102311 original size:53 final size:53
Alignment explanation
Indices: 102185--102343 Score: 177
Period size: 53 Copynumber: 3.1 Consensus size: 53
102175 ATACATTGTT
*** **
102185 CATTGTATCGATACATTGCTCATTGTATCGATACATTCTGGGTT-TA-C-CCA
1 CATTGTATCGATACATTGCTCATTGTATCGATACATTCTACATTGTATCGATA
* *
102235 GA-TGTATCGATACATT-TTGCATTGTATCGATACATTGCT-CATTGTATCGATA
1 CATTGTATCGATACATTGCT-CATTGTATCGATACATT-CTACATTGTATCGATA
* *
102287 CATTGTATCGATACATTGCTCATTGTATCGATACATTTTACAATGTATCGATA
1 CATTGTATCGATACATTGCTCATTGTATCGATACATTCTACATTGTATCGATA
102340 CATT
1 CATT
102344 CAGGCATTTT
Statistics
Matches: 91, Mismatches: 10, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
48 1 0.01
49 33 0.36
50 5 0.05
51 1 0.01
52 3 0.03
53 47 0.52
54 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.15, T:0.40
Consensus pattern (53 bp):
CATTGTATCGATACATTGCTCATTGTATCGATACATTCTACATTGTATCGATA
Found at i:102323 original size:13 final size:13
Alignment explanation
Indices: 102274--102304 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
102264 ATACATTGCT
102274 CATTGTATCGATA
1 CATTGTATCGATA
102287 CATTGTATCGATA
1 CATTGTATCGATA
102300 CATTG
1 CATTG
102305 CTCATTGTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (13 bp):
CATTGTATCGATA
Found at i:104827 original size:28 final size:28
Alignment explanation
Indices: 104794--104867 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
104784 TTTCACAATT
**
104794 GGGGATACTCTAACCCCGTTATTTCATC
1 GGGGATACTCTAACCCCGTTATTTCAGA
* * * *
104822 GGGGATACTCCAACCTCGTTGTTTCCGA
1 GGGGATACTCTAACCCCGTTATTTCAGA
104850 GGGGATACTCTAACCCCG
1 GGGGATACTCTAACCCCG
104868 GCTTTATATC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 38 1.00
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.27
Consensus pattern (28 bp):
GGGGATACTCTAACCCCGTTATTTCAGA
Found at i:104939 original size:28 final size:28
Alignment explanation
Indices: 104900--104974 Score: 116
Period size: 28 Copynumber: 2.7 Consensus size: 28
104890 TTTTTTCATA
*
104900 ATCGGGGGTACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
104928 ATCGGGGATACTCCAACCCCGTTATTTC
1 ATCGGGGATACTCCAACCCCGTTATTTC
*
104956 -TGAGGGGATACTCCAACCC
1 AT-CGGGGATACTCCAACCC
104975 TGGCTTTATA
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
27 1 0.02
28 43 0.98
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.25
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCCCGTTATTTC
Found at i:104961 original size:109 final size:107
Alignment explanation
Indices: 104781--105162 Score: 448
Period size: 107 Copynumber: 3.6 Consensus size: 107
104771 TAAAACACCA
* * * * * *
104781 ATTTTTCACAATTGGGGATACTCTAACCCCGTTATTTCATCGGGGATACTCCAACCTCGTTGTTT
1 ATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTT
* *
104846 CCGAGGGGATACTCTAACCCCGGCTTTATATCTAAAA-ATGTT
66 CCGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATAT-TG
104888 ATTTTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTAT
1 A--TTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTAT
* *
104953 TTCTGAGGGGATACTCCAACCCTGGCTTTATATCTAAAATATTG
64 TTCCGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATATTG
* * *
104997 ATTTTTCATAATCGGGGGTACTCCAACCCCGTTATGTCATCGGGGATAATCCAATCCCGTTATTT
1 ATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTT
* * ** * * **
105062 CCGAAGGGATACTCCAACCCTGATTTTAT-TCCCAAAACA-CC
66 CCGAGGGGATACTCCAACCCCGGCTTTATAT-CTAAAATATTG
* * * **
105103 AGTTTTTCACAATCGGGGATACTCCAATCCCGTTATTTC-TAAAGGGATACTCCAACCCCG
1 A-TTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCAT-CGGGGATACTCCAACCCCG
105163 ATTTTATTTC
Statistics
Matches: 240, Mismatches: 29, Indels: 12
0.85 0.10 0.04
Matches are distributed among these distances:
106 3 0.01
107 141 0.59
109 94 0.39
110 2 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (107 bp):
ATTTTTCATAATCGGGGGTACTCCAACCCCGTTATTTCATCGGGGATACTCCAACCCCGTTATTT
CCGAGGGGATACTCCAACCCCGGCTTTATATCTAAAATATTG
Found at i:105162 original size:28 final size:29
Alignment explanation
Indices: 105118--105176 Score: 84
Period size: 28 Copynumber: 2.0 Consensus size: 29
105108 TTCACAATCG
*
105118 GGGATACTCCAATCCCG-TTATTTCTAAA
1 GGGATACTCCAACCCCGTTTATTTCTAAA
105146 GGGATACTCCAACCCCGATTTTATTTCTAAA
1 GGGATACTCCAACCCCG--TTTATTTCTAAA
105177 ATACCAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 16 0.59
31 11 0.41
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.32
Consensus pattern (29 bp):
GGGATACTCCAACCCCGTTTATTTCTAAA
Found at i:105166 original size:79 final size:79
Alignment explanation
Indices: 105035--105227 Score: 251
Period size: 79 Copynumber: 2.4 Consensus size: 79
105025 CCGTTATGTC
* *
105035 ATCGGGGATAATCCAATCCCGTTATTTCCGAAGGGATACTCCAACCCTGATTTTATTCCCAAAAC
1 ATCGGGGATAATCCAATCCCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTCCCAAAAC
* *
105100 ACCAGTTTTTCACA
66 ACCAATTTTCCACA
* * * * *
105114 ATCGGGGATACTCCAATCCCGTTATTTCTAAAGGGATACTCCAACCCCGATTTTATTTCTAAAAT
1 ATCGGGGATAATCCAATCCCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTCCCAAAAC
105179 ACCAATTTTCCACA
66 ACCAATTTTCCACA
* * *
105193 ATCGGAGATATTCCAACTCCGGTTTTATTTCCAAA
1 ATCGGGGATAATCCAA-TCCCG--TTATTTCCAAA
105228 ACACCAATGT
Statistics
Matches: 98, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 84 0.86
80 4 0.04
82 10 0.10
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (79 bp):
ATCGGGGATAATCCAATCCCGTTATTTCCAAAGGGATACTCCAACCCCGATTTTATTCCCAAAAC
ACCAATTTTCCACA
Found at i:105219 original size:51 final size:51
Alignment explanation
Indices: 105148--105262 Score: 160
Period size: 51 Copynumber: 2.3 Consensus size: 51
105138 TTTCTAAAGG
* *
105148 GATACTCCAACCCCGATTTTATTTCTAAAATACCAAT-TTTCCACAATCGGA
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATGTTT-CACAATCGGA
* * * *
105199 GATATTCCAACTCCGGTTTTATTTCCAAAACACCAATGTTTCACAATCGGG
1 GATACTCCAACCCCGATTTTATTTCCAAAACACCAATGTTTCACAATCGGA
105250 GATACTCCAACCC
1 GATACTCCAACCC
105263 TGTTATTTTC
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
51 52 0.95
52 3 0.05
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.30
Consensus pattern (51 bp):
GATACTCCAACCCCGATTTTATTTCCAAAACACCAATGTTTCACAATCGGA
Found at i:105767 original size:33 final size:33
Alignment explanation
Indices: 105730--105796 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
105720 TTCAACGATT
105730 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
105763 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
105796 T
1 T
105797 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:105768 original size:13 final size:13
Alignment explanation
Indices: 105750--105774 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105740 CATAAAATGT
105750 TGTATCGATACAA
1 TGTATCGATACAA
105763 TGTATCGATACA
1 TGTATCGATACA
105775 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:105857 original size:13 final size:13
Alignment explanation
Indices: 105839--105863 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
105829 ATTACTCACA
105839 TGTATCGATACAT
1 TGTATCGATACAT
105852 TGTATCGATACA
1 TGTATCGATACA
105864 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:106000 original size:52 final size:52
Alignment explanation
Indices: 105872--105991 Score: 222
Period size: 52 Copynumber: 2.3 Consensus size: 52
105862 CACTGATCTT
*
105872 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
105924 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
105976 TGTATCGATACATGCA
1 TGTATCGATACATGCA
105992 AATAAATTTT
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:111460 original size:100 final size:100
Alignment explanation
Indices: 111287--111490 Score: 345
Period size: 100 Copynumber: 2.0 Consensus size: 100
111277 TCCGTTCATA
* *
111287 TAAATTAATTCACTTTAGATGTTCATTGTATAATTACCTTAATCTTCAGTAAGTAATTGACTCCA
1 TAAATTAATTCACTTTAGACGTTCATTGTATAATTACCTTAATCTTCAGTAAGTAATTAACTCCA
*
111352 TATTTATAACTTGTATACTTTAATATTTCAAAGAT
66 TATTTATAACTTATATACTTTAATATTTCAAAGAT
*
111387 TAAATTAATTCACTTTAGACGTTCATTGTGTAATTACCTTAATCTTCAGTAAGTAATTAACTCCA
1 TAAATTAATTCACTTTAGACGTTCATTGTATAATTACCTTAATCTTCAGTAAGTAATTAACTCCA
* * *
111452 TGTTTATAACTTATGTACTTTAATATTTCAAAGGT
66 TATTTATAACTTATATACTTTAATATTTCAAAGAT
111487 TAAA
1 TAAA
111491 GCTTCTAGAA
Statistics
Matches: 97, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 97 1.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (100 bp):
TAAATTAATTCACTTTAGACGTTCATTGTATAATTACCTTAATCTTCAGTAAGTAATTAACTCCA
TATTTATAACTTATATACTTTAATATTTCAAAGAT
Found at i:112126 original size:17 final size:17
Alignment explanation
Indices: 112104--112148 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
112094 AATTCTGTAT
112104 TATTTATTTAGGATAAA
1 TATTTATTTAGGATAAA
* *
112121 TATTTAATTT-TGTTAAA
1 TATTT-ATTTAGGATAAA
112138 TATTTATTTAG
1 TATTTATTTAG
112149 ACAAGAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
16 4 0.17
17 15 0.65
18 4 0.17
ACGTcount: A:0.36, C:0.00, G:0.09, T:0.56
Consensus pattern (17 bp):
TATTTATTTAGGATAAA
Found at i:113176 original size:13 final size:13
Alignment explanation
Indices: 113158--113182 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
113148 CATAAAATGT
113158 TGTATCGATACAA
1 TGTATCGATACAA
113171 TGTATCGATACA
1 TGTATCGATACA
113183 TATTTGTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:113180 original size:33 final size:33
Alignment explanation
Indices: 113138--113207 Score: 106
Period size: 33 Copynumber: 2.1 Consensus size: 33
113128 TTCAACGATT
113138 TGTATCGATACATAAAATG-TTGTATCGATACAA
1 TGTATCGATACAT-AAATGTTTGTATCGATACAA
**
113171 TGTATCGATACATATTTGTTTGTATCGATACAA
1 TGTATCGATACATAAATGTTTGTATCGATACAA
113204 TGTA
1 TGTA
113208 AGCTACTGCC
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
32 3 0.09
33 31 0.91
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (33 bp):
TGTATCGATACATAAATGTTTGTATCGATACAA
Found at i:113409 original size:52 final size:52
Alignment explanation
Indices: 113281--113401 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
113271 CACTGATCTT
* *
113281 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGACCAGATGTATCGATACACTATAAAA
*
113333 TGTATCGATACATGCAGGCAAATTTGACCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGACCAGATGTATCGATACACTATAAAA
113385 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
113402 ATAAATTTTC
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 66 1.00
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGACCAGATGTATCGATACACTATAAAA
Found at i:117202 original size:67 final size:68
Alignment explanation
Indices: 117076--117202 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 68
117066 ATTGGGTTTT
* * * *
117076 AAAGATGATGAAGGTGCCACTATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
117141 AGA
66 AGA
* * * * *
117144 AAAG-TGATAAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAATGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGA
117203 GAAAAAGGAT
Statistics
Matches: 50, Mismatches: 9, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
67 46 0.92
68 4 0.08
ACGTcount: A:0.37, C:0.13, G:0.25, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGGCCAACAATATTGGACTTAAAGATGAAGATG
AGA
Done.