Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold465
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 646967
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32
File 1 of 4
Found at i:11248 original size:14 final size:14
Alignment explanation
Indices: 11229--11277 Score: 73
Period size: 14 Copynumber: 3.6 Consensus size: 14
11219 CCTTCTCTTC
11229 AAAAAAAAAAAA-A
1 AAAAAAAAAAAACA
11242 AAAAAAAAAAAACA
1 AAAAAAAAAAAACA
*
11256 AAAAAAACAAAACA
1 AAAAAAAAAAAACA
*
11270 AAGAAAAA
1 AAAAAAAA
11278 GAGAGAAAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
13 12 0.38
14 20 0.62
ACGTcount: A:0.92, C:0.06, G:0.02, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAACA
Found at i:11293 original size:1 final size:1
Alignment explanation
Indices: 11229--11277 Score: 62
Period size: 1 Copynumber: 49.0 Consensus size: 1
11219 CCTTCTCTTC
* * * *
11229 AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAACAAAACAAAGAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11278 GAGAGAAAAG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
1 40 1.00
ACGTcount: A:0.92, C:0.06, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:12344 original size:55 final size:54
Alignment explanation
Indices: 12259--12992 Score: 1075
Period size: 55 Copynumber: 13.3 Consensus size: 54
12249 TCCGCTTTTT
*
12259 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
12314 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
*
12369 AGTCCTCAAAGAGCAGGACACCTTTTAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACC-TTTAAAGCCCACACAAGTTGGTGGCACCTTT-C
*
12424 AGTCCTCAACGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
12479 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
12534 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA--TTGTCC
1 AGTCCTCAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTT-T-C
12589 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
12644 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
*
12699 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
* *
12754 AGTCCTCAAAGAACAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTT-C
12809 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
12864 ATTCCCCAAAGAGCAAGGACACTTTTCAAAGCCCACACAAGTGGGTGGCACCTTTC
1 AGTCCTCAAAGAGC-AGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
12920 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
* *
12975 ACTCCTCAATGAGCAGGA
1 AGTCCTCAAAGAGCAGGA
12993 TACAATTTAT
Statistics
Matches: 635, Mismatches: 27, Indels: 34
0.91 0.04 0.05
Matches are distributed among these distances:
53 2 0.00
54 14 0.02
55 555 0.87
56 62 0.10
57 2 0.00
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (54 bp):
AGTCCTCAAAGAGCAGGACACCTTTAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:12541 original size:165 final size:165
Alignment explanation
Indices: 12259--12992 Score: 1183
Period size: 165 Copynumber: 4.4 Consensus size: 165
12249 TCCGCTTTTT
*
12259 AGTCCCCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
*
12324 GAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAGGA
66 GAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGA
*
12387 CACCTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
129 CACCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
12424 AGTCCTCAACGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAA
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
12489 GAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
66 GAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
*
12554 CCTTTCAAAGCCCACACAAGTTGGTGGCATTGTCC
131 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
*
12589 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCCCAAA
1 AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
12654 GAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
66 GAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
12719 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
131 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
12754 AGTCCTCAAAGAACAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCA
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCA
* *
12817 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCATTCCCCAAAGAGCAAGG
64 AAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGC-AGG
* * *
12882 ACACTTTTCAAAGCCCACACAAGTGGGTGGCACCTTT-C
128 ACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
* * * * *
12920 AGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACGAGTTGGTGGCACTTTTTACTCCTCAA
1 AGTCCTCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAA
*
12984 TGAGCAGGA
65 AGAGCAGGA
12993 TACAATTTAT
Statistics
Matches: 540, Mismatches: 22, Indels: 13
0.94 0.04 0.02
Matches are distributed among these distances:
164 5 0.01
165 427 0.79
166 101 0.19
167 7 0.01
ACGTcount: A:0.29, C:0.30, G:0.20, T:0.20
Consensus pattern (165 bp):
AGTCCTCAAAGAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAA
GAGCAGGACACCTCTTAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACA
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:13607 original size:17 final size:17
Alignment explanation
Indices: 13585--13618 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13575 GATAAAGTGT
13585 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
13602 TTGAAAAAAAAAAAAAA
1 TTGAAAAAAAAAAAAAA
13619 AATTTAAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (17 bp):
TTGAAAAAAAAAAAAAA
Found at i:13649 original size:21 final size:21
Alignment explanation
Indices: 13625--13681 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
13615 AAAAAATTTA
13625 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
13646 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
13667 AATGTATCGATACAT
1 AATGTATCGATACAT
13682 CCTACAAATG
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:13761 original size:19 final size:19
Alignment explanation
Indices: 13737--13804 Score: 85
Period size: 19 Copynumber: 3.9 Consensus size: 19
13727 AATTCAACAA
13737 TTTGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
13756 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
13771 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
*
13788 ATTGTATCGATACATAA
1 TTTGTATCGATACATAA
13805 TTAGCTACTG
Statistics
Matches: 43, Mismatches: 0, Indels: 12
0.78 0.00 0.22
Matches are distributed among these distances:
13 11 0.26
15 2 0.05
17 2 0.05
19 28 0.65
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:13776 original size:13 final size:13
Alignment explanation
Indices: 13758--13782 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13748 ACATAAGTTT
13758 TGTATCGATACAA
1 TGTATCGATACAA
13771 TGTATCGATACA
1 TGTATCGATACA
13783 TAAGTATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:13780 original size:32 final size:32
Alignment explanation
Indices: 13739--13801 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
13729 TTCAACAATT
*
13739 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTATTGTATCGATACAA
13771 TGTATCGATACATAAGTATTGTATCGATACA
1 TGTATCGATACATAAGTATTGTATCGATACA
13802 TAATTAGCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTATTGTATCGATACAA
Found at i:13862 original size:13 final size:13
Alignment explanation
Indices: 13844--13869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13834 CATTTTTCTG
13844 TGTATCGATACAT
1 TGTATCGATACAT
13857 TGTATCGATACAT
1 TGTATCGATACAT
13870 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:13866 original size:33 final size:33
Alignment explanation
Indices: 13824--13890 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
13814 GCCAAGGAAA
***
13824 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
13857 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
13890 T
1 T
13891 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:16376 original size:27 final size:28
Alignment explanation
Indices: 16337--16412 Score: 93
Period size: 27 Copynumber: 2.8 Consensus size: 28
16327 TTTCTTCACA
* *
16337 ATCGGGGACACTCCAACCCCGTTA-ATC
1 ATCGAGGATACTCCAACCCCGTTATATC
*
16364 ATCGAGGATACTCCAACCCCGTTATTTC
1 ATCGAGGATACTCCAACCCCGTTATATC
*
16392 -TGAGAGGATACTCCAACCCCG
1 AT-CGAGGATACTCCAACCCCG
16413 ACTTTATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 23 0.53
28 20 0.47
ACGTcount: A:0.26, C:0.34, G:0.18, T:0.21
Consensus pattern (28 bp):
ATCGAGGATACTCCAACCCCGTTATATC
Found at i:16407 original size:28 final size:27
Alignment explanation
Indices: 16346--16412 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 27
16336 AATCGGGGAC
*
16346 ACTCCAACCCCGTTAATCATCGAGGAT
1 ACTCCAACCCCGTTAATCATAGAGGAT
*
16373 ACTCCAACCCCGTTATTTC-TGAGAGGAT
1 ACTCCAACCCCGTTA-ATCAT-AGAGGAT
16401 ACTCCAACCCCG
1 ACTCCAACCCCG
16413 ACTTTATTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 16 0.44
28 20 0.56
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.22
Consensus pattern (27 bp):
ACTCCAACCCCGTTAATCATAGAGGAT
Found at i:16459 original size:79 final size:79
Alignment explanation
Indices: 16364--16542 Score: 349
Period size: 79 Copynumber: 2.3 Consensus size: 79
16354 CCCGTTAATC
*
16364 ATCGAGGATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCCCGACTTTATTTTCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCCCGACTTTATTTTCAAAAT
16429 ATCGATTTTTCATA
66 ATCGATTTTTCATA
16443 ATCGGGGATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCCCGACTTTATTTTCAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCCCGACTTTATTTTCAAAAT
16508 ATCGATTTTTCATA
66 ATCGATTTTTCATA
16522 ATCGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
16543 ATTTTATTTT
Statistics
Matches: 99, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 99 1.00
ACGTcount: A:0.28, C:0.27, G:0.15, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTCTGAGAGGATACTCCAACCCCGACTTTATTTTCAAAAT
ATCGATTTTTCATA
Found at i:16552 original size:51 final size:51
Alignment explanation
Indices: 16476--16644 Score: 203
Period size: 51 Copynumber: 3.3 Consensus size: 51
16466 ATTTCTGAGA
* * *
16476 GGATACTCCAACCCCGACTTTATTTTCAAAATATCGATTTTTCATAATCGG
1 GGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATCGG
* * * *
16527 GGATACTCCAACCCCGATTTTATTTTCACAACACCAATTTCTCCTTTAATCGG
1 GGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTT-TTC-ATAATCGG
** * * *
16580 GGATACTCCAATTCCGATTTTATTTCCAAAAATACCAATTTTTCACAATCGA
1 GGATACTCCAACCCCGATTTTATTTTC-AAAATACCAATTTTTCATAATCGG
16632 GGATACTCCAACC
1 GGATACTCCAACC
16645 TCGTTATTTC
Statistics
Matches: 97, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
51 35 0.36
52 18 0.19
53 33 0.34
54 11 0.11
ACGTcount: A:0.30, C:0.27, G:0.10, T:0.33
Consensus pattern (51 bp):
GGATACTCCAACCCCGATTTTATTTTCAAAATACCAATTTTTCATAATCGG
Found at i:16663 original size:28 final size:28
Alignment explanation
Indices: 16627--16708 Score: 87
Period size: 28 Copynumber: 2.9 Consensus size: 28
16617 ATTTTTCACA
*
16627 ATCGAGGATACTCCAACCTCGTTATTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
16655 ATCGGGGATACTCCAACCCCGTTACTTC
1 ATCGGGGATACTCCAACCTCGTTATTTC
* *
16683 --CGAAGGAACACTCCAACCTCGTTATT
1 ATCG--GGGATACTCCAACCTCGTTATT
16709 ATCTCCAAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
26 2 0.04
28 43 0.96
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.27
Consensus pattern (28 bp):
ATCGGGGATACTCCAACCTCGTTATTTC
Found at i:20697 original size:21 final size:21
Alignment explanation
Indices: 20673--20716 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
20663 TAATATTCTT
* *
20673 GAAAAGAAATTAAGTGAATTA
1 GAAAAGAAAATAAATGAATTA
20694 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAATAAATGAATTA
20715 GA
1 GA
20717 GGAAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.20
Consensus pattern (21 bp):
GAAAAGAAAATAAATGAATTA
Found at i:20724 original size:21 final size:21
Alignment explanation
Indices: 20673--20731 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 21
20663 TAATATTCTT
** *
20673 GAAAAGAAATTAAGTGAATTA
1 GAAAAGAAAAGAAATGAATTA
*
20694 GAAAAGAAAATAAATGAATTA
1 GAAAAGAAAAGAAATGAATTA
*
20715 GAGGAA-AAAAGAAATGA
1 GA-AAAGAAAAGAAATGA
20732 GTTACAAGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 31 0.94
22 2 0.06
ACGTcount: A:0.63, C:0.00, G:0.20, T:0.17
Consensus pattern (21 bp):
GAAAAGAAAAGAAATGAATTA
Found at i:24095 original size:20 final size:21
Alignment explanation
Indices: 24070--24126 Score: 82
Period size: 20 Copynumber: 2.8 Consensus size: 21
24060 AAAACCCTTA
24070 AAAGTATCGATACATAATT-C
1 AAAGTATCGATACATAATTGC
*
24090 AAAGTATCGATACAT-GTTGC
1 AAAGTATCGATACATAATTGC
*
24110 AATGTATCGATACATAA
1 AAAGTATCGATACATAA
24127 AAAAGATGTA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (21 bp):
AAAGTATCGATACATAATTGC
Found at i:24201 original size:19 final size:18
Alignment explanation
Indices: 24177--24240 Score: 66
Period size: 20 Copynumber: 3.7 Consensus size: 18
24167 TAGCCAAACT
24177 TGTATCGATACACAAAATA
1 TGTATCGATACACAAAA-A
24196 TGTATCGAT--AC---AA
1 TGTATCGATACACAAAAA
24209 TGTATCGATACACAAAAAA
1 TGTATCGATACAC-AAAAA
24228 TTGTATCGATACA
1 -TGTATCGATACA
24241 TTGGCTTGTA
Statistics
Matches: 38, Mismatches: 0, Indels: 13
0.75 0.00 0.25
Matches are distributed among these distances:
13 10 0.26
14 1 0.03
15 2 0.05
17 2 0.05
19 11 0.29
20 12 0.32
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (18 bp):
TGTATCGATACACAAAAA
Found at i:24213 original size:13 final size:13
Alignment explanation
Indices: 24195--24220 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24185 TACACAAAAT
24195 ATGTATCGATACA
1 ATGTATCGATACA
24208 ATGTATCGATACA
1 ATGTATCGATACA
24221 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:24218 original size:32 final size:33
Alignment explanation
Indices: 24177--24240 Score: 112
Period size: 32 Copynumber: 2.0 Consensus size: 33
24167 TAGCCAAACT
*
24177 TGTATCGATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
24209 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
24241 TTGGCTTGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
32 18 0.60
33 12 0.40
ACGTcount: A:0.44, C:0.16, G:0.12, T:0.28
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:26229 original size:21 final size:21
Alignment explanation
Indices: 26196--26245 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
26186 TTGCAAGTTG
*
26196 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
26218 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
26239 AAATAAA
1 AAATAAA
26246 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:28063 original size:15 final size:15
Alignment explanation
Indices: 28043--28073 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
28033 TAAAAATGTC
*
28043 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
28058 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
28073 C
1 C
28074 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:30160 original size:20 final size:20
Alignment explanation
Indices: 30135--30199 Score: 72
Period size: 20 Copynumber: 3.6 Consensus size: 20
30125 GGAAATTCAA
30135 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
*
30155 TGTATCGATACA-------A
1 TGTATCGATACATTTTTCTT
30168 TGTATCGATACATTTTTCTT
1 TGTATCGATACATTTTTCTT
30188 TGTATCGATACA
1 TGTATCGATACA
30200 ATGTATCGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 14
0.69 0.04 0.27
Matches are distributed among these distances:
13 12 0.33
20 24 0.67
ACGTcount: A:0.26, C:0.15, G:0.12, T:0.46
Consensus pattern (20 bp):
TGTATCGATACATTTTTCTT
Found at i:30173 original size:13 final size:13
Alignment explanation
Indices: 30155--30179 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30145 CATTTTTCTT
30155 TGTATCGATACAA
1 TGTATCGATACAA
30168 TGTATCGATACA
1 TGTATCGATACA
30180 TTTTTCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:30174 original size:33 final size:33
Alignment explanation
Indices: 30132--30212 Score: 162
Period size: 33 Copynumber: 2.5 Consensus size: 33
30122 TCTGGAAATT
30132 CAATGTATCGATACATTTTTCTTTGTATCGATA
1 CAATGTATCGATACATTTTTCTTTGTATCGATA
30165 CAATGTATCGATACATTTTTCTTTGTATCGATA
1 CAATGTATCGATACATTTTTCTTTGTATCGATA
30198 CAATGTATCGATACA
1 CAATGTATCGATACA
30213 CTGTATCGAT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 48 1.00
ACGTcount: A:0.30, C:0.16, G:0.12, T:0.42
Consensus pattern (33 bp):
CAATGTATCGATACATTTTTCTTTGTATCGATA
Found at i:30206 original size:13 final size:13
Alignment explanation
Indices: 30188--30225 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
30178 CATTTTTCTT
30188 TGTATCGATACAA
1 TGTATCGATACAA
*
30201 TGTATCGATACAC
1 TGTATCGATACAA
30214 TGTATCGATACA
1 TGTATCGATACA
30226 GGGGGATTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:30380 original size:20 final size:20
Alignment explanation
Indices: 30337--30382 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
30327 AAATCTTTTG
30337 CAAAATACTTGTTTTTCACTT
1 CAAAATACTTGTTTTTCAC-T
*
30358 CAAATTACTTCGTTTTTCA-T
1 CAAAATACTT-GTTTTTCACT
30378 CAAAA
1 CAAAA
30383 CCAGCATCAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 5 0.23
21 9 0.41
22 8 0.36
ACGTcount: A:0.33, C:0.20, G:0.04, T:0.43
Consensus pattern (20 bp):
CAAAATACTTGTTTTTCACT
Found at i:32712 original size:20 final size:19
Alignment explanation
Indices: 32657--32712 Score: 76
Period size: 20 Copynumber: 2.8 Consensus size: 19
32647 AAAACCCTTA
*
32657 AAAGTATCGATACATAATTC
1 AAAGTATCGATACAT-GTTC
32677 AAAGTATCGATACATGTTGC
1 AAAGTATCGATACATGTT-C
*
32697 AATGTATCGATACATG
1 AAAGTATCGATACATG
32713 AAAAAGATGT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.30
Consensus pattern (19 bp):
AAAGTATCGATACATGTTC
Found at i:32800 original size:13 final size:13
Alignment explanation
Indices: 32782--32807 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32772 TACACAAAAT
32782 ATGTATCGATACA
1 ATGTATCGATACA
32795 ATGTATCGATACA
1 ATGTATCGATACA
32808 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32807 original size:32 final size:33
Alignment explanation
Indices: 32764--32827 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 33
32754 TAGCCAAACT
* *
32764 TGTATCTATACACAAAATA-TGTATCGATACAA
1 TGTATCGATACACAAAAAATTGTATCGATACAA
32796 TGTATCGATACACAAAAAATTGTATCGATACA
1 TGTATCGATACACAAAAAATTGTATCGATACA
32828 TTGGCTTGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 17 0.59
33 12 0.41
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.30
Consensus pattern (33 bp):
TGTATCGATACACAAAAAATTGTATCGATACAA
Found at i:41663 original size:20 final size:21
Alignment explanation
Indices: 41616--41668 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
41606 GCCAATCACC
*
41616 TGTATCGATACATTCTTTGTA
1 TGTATCGATACATTCTTGGTA
*
41637 AGTATCGATACA-T-TTGGTCA
1 TGTATCGATACATTCTTGGT-A
41657 TGTATCGATACA
1 TGTATCGATACA
41669 ATGTATCGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 4 0.14
20 13 0.46
21 11 0.39
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (21 bp):
TGTATCGATACATTCTTGGTA
Found at i:41674 original size:13 final size:13
Alignment explanation
Indices: 41656--41680 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
41646 ACATTTGGTC
41656 ATGTATCGATACA
1 ATGTATCGATACA
41669 ATGTATCGATAC
1 ATGTATCGATAC
41681 TGTGCATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:41713 original size:20 final size:19
Alignment explanation
Indices: 41690--41728 Score: 69
Period size: 20 Copynumber: 2.0 Consensus size: 19
41680 CTGTGCATTA
41690 TGTATCGATACATTTGAAGG
1 TGTATCGATACATTT-AAGG
41710 TGTATCGATACATTTAAGG
1 TGTATCGATACATTTAAGG
41729 GTTTTGACCT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.36
Consensus pattern (19 bp):
TGTATCGATACATTTAAGG
Found at i:46915 original size:13 final size:13
Alignment explanation
Indices: 46897--46922 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
46887 CAATTTTTTG
46897 TGTATCGATACAT
1 TGTATCGATACAT
46910 TGTATCGATACAT
1 TGTATCGATACAT
46923 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:49538 original size:13 final size:13
Alignment explanation
Indices: 49520--49558 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
49510 ATAATCACCC
49520 TGTATCGATACAA
1 TGTATCGATACAA
49533 TGTATCGATACAA
1 TGTATCGATACAA
49546 TGTATCGATACAA
1 TGTATCGATACAA
49559 AGAAAAATGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:55755 original size:13 final size:13
Alignment explanation
Indices: 55737--55762 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
55727 CAATTTTTTG
55737 TGTATCGATACAT
1 TGTATCGATACAT
55750 TGTATCGATACAT
1 TGTATCGATACAT
55763 ACTTGCTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:62434 original size:17 final size:18
Alignment explanation
Indices: 62402--62450 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
62392 ATTTATTTTT
62402 TAAAATCTATATTTG-TATA
1 TAAAAT-TA-ATTTGTTATA
62421 TAAAATTAATTTGTTATA
1 TAAAATTAATTTGTTATA
*
62439 AAAAATTAATTT
1 TAAAATTAATTT
62451 TTAAATATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 5 0.18
18 17 0.61
19 6 0.21
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (18 bp):
TAAAATTAATTTGTTATA
Found at i:62440 original size:16 final size:19
Alignment explanation
Indices: 62402--62441 Score: 59
Period size: 16 Copynumber: 2.3 Consensus size: 19
62392 ATTTATTTTT
62402 TAAAATCTATATTTGTATA
1 TAAAATCTATATTTGTATA
62421 TAAAAT-TA-ATTTGT-TA
1 TAAAATCTATATTTGTATA
62437 TAAAA
1 TAAAA
62442 AATTAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 6 0.29
18 2 0.10
19 6 0.29
ACGTcount: A:0.47, C:0.03, G:0.05, T:0.45
Consensus pattern (19 bp):
TAAAATCTATATTTGTATA
Found at i:63386 original size:22 final size:22
Alignment explanation
Indices: 63361--63404 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
63351 TAAAGCTCAT
*
63361 GATATAATTTACTTTTTGATAA
1 GATATAATATACTTTTTGATAA
63383 GATATAATATACTTTTTGATAA
1 GATATAATATACTTTTTGATAA
63405 ATTACTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.48
Consensus pattern (22 bp):
GATATAATATACTTTTTGATAA
Found at i:63682 original size:16 final size:16
Alignment explanation
Indices: 63645--63683 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
63635 AGTTTCTTTC
*
63645 AGGTTTAGGCTATTTT
1 AGGTTTGGGCTATTTT
*
63661 AAGTTTGGGCTATTTT
1 AGGTTTGGGCTATTTT
*
63677 GGGTTTG
1 AGGTTTG
63684 AGTTTCTTGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.15, C:0.05, G:0.31, T:0.49
Consensus pattern (16 bp):
AGGTTTGGGCTATTTT
Found at i:64664 original size:13 final size:13
Alignment explanation
Indices: 64646--64670 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
64636 CATTATGCTT
64646 TGTATCGATACAA
1 TGTATCGATACAA
64659 TGTATCGATACA
1 TGTATCGATACA
64671 TGCACAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:64684 original size:20 final size:19
Alignment explanation
Indices: 64655--64692 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
64645 TTGTATCGAT
64655 ACAATGTATCGATACATGC
1 ACAATGTATCGATACATGC
64674 ACAATTGTATCGATACATG
1 ACAA-TGTATCGATACATG
64693 AAATTGGTAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.37, C:0.18, G:0.16, T:0.29
Consensus pattern (19 bp):
ACAATGTATCGATACATGC
Found at i:66288 original size:210 final size:209
Alignment explanation
Indices: 65916--66416 Score: 564
Period size: 210 Copynumber: 2.4 Consensus size: 209
65906 GGGCTAGAGC
* * * * *
65916 TTCCCCAAAGATAAAATTATGAAAATATTTAGGAAGAAAAAGAAAATATGATTCTTTTATGAAGA
1 TTCCCCAAAAATAAAATTATGAAAATATTTA-GAACAAAGAGAAAATTTGATTCTTTTATAAAGA
* * * * *
65981 ATGAGGTTGGAGTATCCCCTCGAAGTAGTAGGGAAGGAGTTTCTCATGAAGATAAAATTATGAAA
65 ATGACGTTAGAGTATCCACTAGAAGTAGTAGGGAAGGAGTTTCTCATGAAGATAAAATTATAAAA
** * *
66046 ACATTTAAAGACAAAGAAAAAATTTGATTTTTTATAAAGAATGAGGTT-AAAGTTTC-TCCCTGG
130 ACATTTAAAGACAAAGAAAAAATTTGATTTTTTATAAAGAACAAGGTTGAAA-TATCATCCC-AG
*
66109 AGTAGTAGGGTTGGAGT
193 AGTAGTAGGGTTCGAGT
* * * *
66126 TTCCCTAAAAATAAAATTATAAAAATATTTAGCAATAAAGAGAAAATTTGATTCTTTTATAAAGG
1 TTCCCCAAAAATAAAATTATGAAAATATTTAG-AACAAAGAGAAAATTTGATTCTTTTATAAAGA
* ** *
66191 ATGACGTTAGAGTATCCTATTAG-AGTAGT-GAGGTTGGAGTTT-TCCCTGAAGATAAAATTATA
65 ATGACGTTAGAGTATCC-ACTAGAAGTAGTAG-GGAAGGAGTTTCT-CATGAAGATAAAATTATA
** * * **
66253 AAAACATTTAGGGACAAAGAAAAAATTTGATTTTTTATGAAGAACAAGGTTGGAATATCATTTCA
127 AAAACATTTAAAGACAAAGAAAAAATTTGATTTTTTATAAAGAACAAGGTTGAAATATCATCCCA
*
66318 GAGTAGTGGGGTTCGAGT
192 GAGTAGTAGGGTTCGAGT
* * * *
66336 TTCCCCAAAAATAAAATTATGAAAATATTTAAGGACAAAGAGAAAATTTAATTTTTTTATGAAGA
1 TTCCCCAAAAATAAAATTATGAAAATATTT-AGAACAAAGAGAAAATTTGATTCTTTTATAAAGA
* *
66401 ACG-GGTTAGAGTATCC
65 ATGACGTTAGAGTATCC
66417 CCTCTGAGTA
Statistics
Matches: 245, Mismatches: 39, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
209 15 0.06
210 222 0.91
211 8 0.03
ACGTcount: A:0.41, C:0.09, G:0.20, T:0.31
Consensus pattern (209 bp):
TTCCCCAAAAATAAAATTATGAAAATATTTAGAACAAAGAGAAAATTTGATTCTTTTATAAAGAA
TGACGTTAGAGTATCCACTAGAAGTAGTAGGGAAGGAGTTTCTCATGAAGATAAAATTATAAAAA
CATTTAAAGACAAAGAAAAAATTTGATTTTTTATAAAGAACAAGGTTGAAATATCATCCCAGAGT
AGTAGGGTTCGAGT
Found at i:66366 original size:104 final size:104
Alignment explanation
Indices: 65902--66449 Score: 494
Period size: 105 Copynumber: 5.2 Consensus size: 104
65892 TGTTTGGAAA
* * * * * *
65902 AGTGGGGCTAGAGCTTCCCCAAAGATAAAATTATGAAAATATTTAGGAAGAAA-AAGAAAATATG
1 AGTGGGGTTGGAGTTTCCCCAAAGATAAAATTATGAAAATATTTAGGGACAAAGAA-AAAATTTG
* *
65966 ATTCTTTTATGAAGAATGAGGTTGGAGTATCCCCTC-GAAGT
65 ATT-TTTTATGAAGAATGAGGTTAGAGTATCCTCTCAG-AGT
* ** * * **
66007 AGTAGGGAAGGAGTTT-CTCATGAAGATAAAATTATGAAAACATTTAAAGACAAAGAAAAAATTT
1 AGTGGGGTTGGAGTTTCCCCA--AAGATAAAATTATGAAAATATTTAGGGACAAAGAAAAAATTT
* * * * *
66071 GATTTTTTATAAAGAATGAGGTTAAAGT-TTCTCCCTGGAGT
64 GATTTTTTATGAAGAATGAGGTTAGAGTATCCTCTC-AGAGT
* * * * ** * *
66112 AGTAGGGTTGGAGTTTCCCTAAAAATAAAATTATAAAAATATTTAGCAATAAAGAGAAAATTTGA
1 AGTGGGGTTGGAGTTTCCCCAAAGATAAAATTATGAAAATATTTAGGGACAAAGAAAAAATTTGA
* * * * *
66177 TTCTTTTATAAAGGATGACGTTAGAGTATCCTATTAGAGT
66 TT-TTTTATGAAGAATGAGGTTAGAGTATCCTCTCAGAGT
* ** * *
66217 AGTGAGGTTGGAGTTTTCCCTGAAGATAAAATTATAAAAACATTTAGGGACAAAGAAAAAATTTG
1 AGTGGGGTTGGAG-TTTCCCCAAAGATAAAATTATGAAAATATTTAGGGACAAAGAAAAAATTTG
** * * * *
66282 ATTTTTTATGAAGAACAAGGTTGGAATATCATTTCAGAGT
65 ATTTTTTATGAAGAATGAGGTTAGAGTATCCTCTCAGAGT
* * * * *
66322 AGTGGGGTTCGAGTTTCCCCAAAAATAAAATTATGAAAATATTTAAGGACAAAGAGAAAATTTAA
1 AGTGGGGTTGGAGTTTCCCCAAAGATAAAATTATGAAAATATTTAGGGACAAAGAAAAAATTTGA
* * *
66387 TTTTTTTATGAAGAACG-GGTTAGAGTATCCCCTCTGAGT
66 -TTTTTTATGAAGAATGAGGTTAGAGTATCCTCTCAGAGT
* *
66426 AGTGGGGTTAGAGTTTCCTCAAAG
1 AGTGGGGTTGGAGTTTCCCCAAAG
66450 TCAAAAAATT
Statistics
Matches: 356, Mismatches: 77, Indels: 21
0.78 0.17 0.05
Matches are distributed among these distances:
104 126 0.35
105 138 0.39
106 90 0.25
107 2 0.01
ACGTcount: A:0.39, C:0.09, G:0.21, T:0.30
Consensus pattern (104 bp):
AGTGGGGTTGGAGTTTCCCCAAAGATAAAATTATGAAAATATTTAGGGACAAAGAAAAAATTTGA
TTTTTTATGAAGAATGAGGTTAGAGTATCCTCTCAGAGT
Found at i:68905 original size:21 final size:21
Alignment explanation
Indices: 68881--68933 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
68871 CTTAGAAATA
*
68881 TGTATCGATACTTCATGAACT
1 TGTATTGATACTTCATGAACT
*
68902 TGTATTGACACTTCATGAACT
1 TGTATTGATACTTCATGAACT
68923 TGTATTGATAC
1 TGTATTGATAC
68934 ATAAGTTTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGTATTGATACTTCATGAACT
Found at i:68945 original size:13 final size:13
Alignment explanation
Indices: 68927--68955 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
68917 TGAACTTGTA
68927 TTGATACATAAGT
1 TTGATACATAAGT
68940 TTGATACATAAGT
1 TTGATACATAAGT
68953 TTG
1 TTG
68956 TGTATCAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (13 bp):
TTGATACATAAGT
Found at i:77132 original size:38 final size:37
Alignment explanation
Indices: 77090--77170 Score: 99
Period size: 37 Copynumber: 2.2 Consensus size: 37
77080 GCACCCTAGA
*
77090 GAGATAGGGAACATAAAGATATACCATGTCAAGCACTT
1 GAGATAGGGAAAAT-AAGATATACCATGTCAAGCACTT
** * * *
77128 GAGATAGGGAAAATTGGGTATTCCGTGTCAAGCACTT
1 GAGATAGGGAAAATAAGATATACCATGTCAAGCACTT
77165 GAGATA
1 GAGATA
77171 TACCGACACA
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
37 24 0.65
38 13 0.35
ACGTcount: A:0.37, C:0.14, G:0.26, T:0.23
Consensus pattern (37 bp):
GAGATAGGGAAAATAAGATATACCATGTCAAGCACTT
Found at i:83118 original size:79 final size:78
Alignment explanation
Indices: 83013--83237 Score: 240
Period size: 79 Copynumber: 2.8 Consensus size: 78
83003 CCCTCGGAAT
*
83013 ACAGGGTT-AGAGTATCCTCGAGATGAAAAATTTAATATTTTCGAAATAAAAAGGGAGTTGGAGT
1 ACAGGGTTGA-AGTATCCACGAGATGAAAAATTTAATATTTTCGAAATAAAAAGGG-GTTGGAGT
83077 ATCTCCTCGA-AAATA
64 ATCTCCT-GAGAAATA
* * * * * *
83092 ACGGGGTTGAAGTGTCCATGAGATGAAAAATTTAATATTTTAGAGATAAAAGTGGGGTTGGAGTA
1 ACAGGGTTGAAGTATCCACGAGATGAAAAATTTAATATTTTCGAAATAAAA-AGGGGTTGGAGTA
*
83157 TCTCCTTAGAAATA
65 TCTCCTGAGAAATA
* * * ** * *
83171 ATAGGGTTGGAGTATCCCCGAGATGAAGCATTTAATA-TTTCAAAAATAAAAATGGGGTTTGAGT
1 ACAGGGTTGAAGTATCCACGAGATGAAAAATTTAATATTTTC-GAAATAAAAA-GGGGTTGGAGT
83235 ATC
64 ATC
83238 CCCGAGATTA
Statistics
Matches: 120, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
78 4 0.03
79 112 0.93
80 4 0.03
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (78 bp):
ACAGGGTTGAAGTATCCACGAGATGAAAAATTTAATATTTTCGAAATAAAAAGGGGTTGGAGTAT
CTCCTGAGAAATA
Found at i:83235 original size:51 final size:51
Alignment explanation
Indices: 83173--83290 Score: 155
Period size: 51 Copynumber: 2.3 Consensus size: 51
83163 TAGAAATAAT
* ** *
83173 AGGGTTGGAGTATCCCCGAGATGAAGCATTTAATATTTCAAAAATAAAAAT
1 AGGGTTTGAGTATCCCCGAGATGAAAAATTTAATATTTCAAAAATAAAAAC
* * * * *
83224 GGGGTTTGAGTATCCCCGAGATTAAAAATTTAATTTTTTAGAAATAAAAAC
1 AGGGTTTGAGTATCCCCGAGATGAAAAATTTAATATTTCAAAAATAAAAAC
83275 AGGGTTTGAGTATCCC
1 AGGGTTTGAGTATCCC
83291 TTTGGAATTG
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 57 1.00
ACGTcount: A:0.37, C:0.12, G:0.20, T:0.31
Consensus pattern (51 bp):
AGGGTTTGAGTATCCCCGAGATGAAAAATTTAATATTTCAAAAATAAAAAC
Found at i:86472 original size:51 final size:52
Alignment explanation
Indices: 86396--86531 Score: 186
Period size: 51 Copynumber: 2.7 Consensus size: 52
86386 TTTTAACTAG
* *
86396 ATGTATCGATACATTGAATAATGTATCGATACATC-TGGGTAAAAAGTCAGA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTTGGGTAAAAAGACAGA
* *
86447 ATGTATAGATACATTGAAAAATGTATCGATACA-CTTGGGTAAAAAGACATA
1 ATGTATCGATACATTGAAAAATGTATCGATACATCTTGGGTAAAAAGACAGA
* * * *
86498 ATGTATCGATACATTCATACATGTATCAATACAT
1 ATGTATCGATACATTGAAAAATGTATCGATACAT
86532 TGAAAAATGT
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
50 1 0.01
51 73 0.99
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (52 bp):
ATGTATCGATACATTGAAAAATGTATCGATACATCTTGGGTAAAAAGACAGA
Found at i:86523 original size:20 final size:19
Alignment explanation
Indices: 86494--86551 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 19
86484 GGTAAAAAGA
86494 CATAATGTATCGATACATT
1 CATAATGTATCGATACATT
*
86513 CATACATGTATCAATACATT
1 CATA-ATGTATCGATACATT
* *
86533 GAAAAATGTATCGATACAT
1 -CATAATGTATCGATACAT
86552 CTGGGTAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
19 4 0.12
20 27 0.82
21 2 0.06
ACGTcount: A:0.41, C:0.16, G:0.10, T:0.33
Consensus pattern (19 bp):
CATAATGTATCGATACATT
Found at i:86602 original size:72 final size:72
Alignment explanation
Indices: 86454--86634 Score: 276
Period size: 72 Copynumber: 2.5 Consensus size: 72
86444 AGAATGTATA
* *
86454 GATACATTGAAAAATGTATCGATACA-CTTGGGT-AAAAAGACATAATGTATCGATACATTCATA
1 GATACATTGAAAAATGTATCGATACATC-TGGGTAAAAAAGACAGAATGTATCGATACATTCACA
*
86517 CATGTATC
65 CATGCATC
* *
86525 AATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGATAGAATGTATCGATACATTCACAC
1 GATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGACAGAATGTATCGATACATTCACAC
86590 ATGCATC
66 ATGCATC
* *
86597 GATACATTAAAAAATGTATCGATAGATCTGGGTAAAAA
1 GATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
86635 TGTGACTTTT
Statistics
Matches: 100, Mismatches: 8, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
71 30 0.30
72 70 0.70
ACGTcount: A:0.43, C:0.13, G:0.16, T:0.28
Consensus pattern (72 bp):
GATACATTGAAAAATGTATCGATACATCTGGGTAAAAAAGACAGAATGTATCGATACATTCACAC
ATGCATC
Found at i:86617 original size:20 final size:20
Alignment explanation
Indices: 86569--86620 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
86559 AAAAAGATAG
* *
86569 AATGTATCGATACATTCACA
1 AATGTATCGATACATTAAAA
* *
86589 CATGCATCGATACATTAAAA
1 AATGTATCGATACATTAAAA
86609 AATGTATCGATA
1 AATGTATCGATA
86621 GATCTGGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (20 bp):
AATGTATCGATACATTAAAA
Found at i:87582 original size:28 final size:28
Alignment explanation
Indices: 87542--88042 Score: 551
Period size: 28 Copynumber: 17.5 Consensus size: 28
87532 CACTAACTTG
*
87542 TGTGGGCTTTGAAAGAGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
87570 TGTGGGCTTTGAAAGGGTATGCCACTGACT
1 TGTGGGCTTTGAAAGGG--TGCCACTGACT
*
87600 TGTAGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
87628 TGTGGGCTTTGAAGGGGTACCACTGAC-
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
87655 TGTGGGCTTT-AGAAGGGTGCCACTGATTT
1 TGTGGGCTTTGA-AAGGGTGCCACTGA-CT
*
87684 GTGTGGGCTTTGAAAGGGTATGCCACTAACT
1 -TGTGGGCTTTGAAAGGG--TGCCACTGACT
*
87715 TGTGGGCTTTGAAAGGGTGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* *
87743 TGTGGGCTTTGAAAGGGCGCCATTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
** * *
87771 TGTGGTTTTTTG-AAGAGATGCCACTCACT
1 TGTGG-GCTTTGAAAG-GGTGCCACTGACT
* *
87800 TGTGGACTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
87828 TGTGGGCTTTGAAAGGGTGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
*
87856 TGTGGGCTTTGAAAGGATGCCACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* ** *
87884 TGTGGTCTTTTG-AAGAGACGCCATTGACT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACT
*
87913 TGTGGGCTTTGAAAGGATGCCATGACTCTGACT
1 TGTGGGCTTTGAAAGGGTGCC---A--CTGACT
* ** *
87946 TCTGGGCTTTGAAAATGTGCTACTGACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
87974 TGTGGGCTTTGAAAAGGTACCACTAACT
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
* * *
88002 TGTGGGCTTTGAAAGGATGTCACTGACC
1 TGTGGGCTTTGAAAGGGTGCCACTGACT
88030 TGTGGGCTTTGAA
1 TGTGGGCTTTGAA
88043 GAGATGAACA
Statistics
Matches: 406, Mismatches: 47, Indels: 40
0.82 0.10 0.08
Matches are distributed among these distances:
26 1 0.00
27 22 0.05
28 246 0.61
29 45 0.11
30 60 0.15
31 3 0.01
32 8 0.02
33 21 0.05
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACT
Found at i:87694 original size:85 final size:85
Alignment explanation
Indices: 87542--88042 Score: 525
Period size: 85 Copynumber: 5.8 Consensus size: 85
87532 CACTAACTTG
* *
87542 TGTGGGCTTTGAAAGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTATGCCACTGACT-TGTAGG
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGG--TGCCACTGACTGTGTGGG
87606 CTTTGAAAGGGTGCCACTGACT
64 CTTTGAAAGGGTGCCACTGACT
* * *
87628 TGTGGGCTTTGAAGGGGTACCACTGAC-TGTGGGCTTT-AGAAGGGTGCCACTGATTTGTGTGGG
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGA-AAGGGTGCCACTGA-CTGTGTGGG
*
87691 CTTTGAAAGGGTATGCCACTAACT
64 CTTTGAAAGGG--TGCCACTGACT
* * * **
87715 TGTGGGCTTTGAAAGGGTGCCATTGACTTGTGGGCTTTGAAAGGGCGCCATTGACT-TGTGGTTT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTGTGTGG-GC
* *
87779 TTTG-AAGAGATGCCACTCACT
65 TTTGAAAG-GGTGCCACTGACT
* *
87800 TGTGGACTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACT-TGTGGGCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTGTGTGGGCT
*
87864 TTGAAAGGATGCCACTGACT
66 TTGAAAGGGTGCCACTGACT
* ** * *
87884 TGTGGTCTTTTG-AAGAGACGCCATTGACTTGTGGGCTTTGAAAGGATGCCA-TGACTCTGACTT
1 TGTGGGC-TTTGAAAG-GGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGA--CTG---T
* ** *
87947 CTGGGCTTTGAAAATGTGCTACTGACT
59 GTGGGCTTTGAAAGGGTGCCACTGACT
* * * * * *
87974 TGTGGGCTTTGAAAAGGTACCACTAACTTGTGGGCTTTGAAAGGATGTCACTGAC-CTGTGGGCT
1 TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTGTGTGGGCT
88038 TTGAA
66 TTGAA
88043 GAGATGAACA
Statistics
Matches: 352, Mismatches: 43, Indels: 42
0.81 0.10 0.10
Matches are distributed among these distances:
83 9 0.03
84 42 0.12
85 136 0.39
86 34 0.10
87 40 0.11
88 23 0.07
89 34 0.10
90 34 0.10
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.31
Consensus pattern (85 bp):
TGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTGTGTGGGCT
TTGAAAGGGTGCCACTGACT
Found at i:87855 original size:113 final size:115
Alignment explanation
Indices: 87549--88042 Score: 606
Period size: 113 Copynumber: 4.3 Consensus size: 115
87539 TTGTGTGGGC
*
87549 TTTGAA-AGAGTGCCACTGACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTAGGCTTTGAA
1 TTTGAAGAGA-TGCCACTGACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAA
* * *
87613 AGGGTGCCACTGACTTGTGGGCTTTGAAGGGGTACCACTGAC-TGTGGGCT
65 AGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGTCT
* * * *
87663 TTAGAAG-GGTGCCACTGATTTGTGTGGGCTTTGAAAGGGTATGCCACTAACTTGTGGGCTTTGA
1 TTTGAAGAGATGCCACTGA-CT-TGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGA
* * * *
87727 AAGGGTGCCATTGACTTGTGGGCTTTGAAAGGGCGCCATTGACTTGTGGTTT
64 AAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGTCT
* *
87779 TTTGAAGAGATGCCACTCACTTGTGGACTTTGAAA-GG-ATGCCACTGACTTGTGGGCTTTGAAA
1 TTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAA
*
87842 GGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTGTGGTCT
66 GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGTCT
* * * * * *
87892 TTTGAAGAGACGCCATTGACTTGTGGGCTTTGAAAGGATGCCATGACTCTGACTTCTGGGCTTTG
1 TTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGG--G-TATGCCACTGACTTGTGGGCTTTG
** * * * * *
87957 AAAATGTGCTACTGACTTGTGGGCTTTGAAAAGGTACCACTAACTTGTGGGC-
63 AAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGTCT
* *
88009 TTTGAA-AGGATGTCACTGACCTGTGGGCTTTGAA
1 TTTGAAGA-GATGCCACTGACTTGTGGGCTTTGAA
88043 GAGATGAACA
Statistics
Matches: 327, Mismatches: 42, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
113 110 0.34
114 10 0.03
115 91 0.28
116 15 0.05
117 37 0.11
118 64 0.20
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (115 bp):
TTTGAAGAGATGCCACTGACTTGTGGGCTTTGAAAGGGTATGCCACTGACTTGTGGGCTTTGAAA
GGGTGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGTCT
Found at i:89316 original size:21 final size:21
Alignment explanation
Indices: 89292--89360 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
89282 TTTGGACCTC
*
89292 TTTTTTGTTTGTTTGTTTGTT
1 TTTTTTGTTTGTTTCTTTGTT
* * *
89313 TTTTTTGTTTTTTTCCTTGGT
1 TTTTTTGTTTGTTTCTTTGTT
* * *
89334 TTTTTTCTTGGTTTTTTTTGTT
1 TTTTTTGTTTG-TTTCTTTGTT
89356 TTTTT
1 TTTTT
89361 GCTTTTTTCG
Statistics
Matches: 37, Mismatches: 10, Indels: 1
0.77 0.21 0.02
Matches are distributed among these distances:
21 25 0.68
22 12 0.32
ACGTcount: A:0.00, C:0.04, G:0.14, T:0.81
Consensus pattern (21 bp):
TTTTTTGTTTGTTTCTTTGTT
Found at i:89326 original size:12 final size:12
Alignment explanation
Indices: 89293--89360 Score: 50
Period size: 12 Copynumber: 5.6 Consensus size: 12
89283 TTGGACCTCT
89293 TTTTTGTTTGTTTG
1 TTTTT-TTT-TTTG
89307 TTTGTTTTTTTTG
1 TTT-TTTTTTTTG
**
89320 TTTTTTTCCTTG
1 TTTTTTTTTTTG
* *
89332 GTTTTTTTCTTG
1 TTTTTTTTTTTG
*
89344 --GTTTTTTTTG
1 TTTTTTTTTTTG
89354 TTTTTTT
1 TTTTTTT
89361 GCTTTTTTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
10 8 0.18
12 21 0.48
13 7 0.16
14 6 0.14
15 2 0.05
ACGTcount: A:0.00, C:0.04, G:0.15, T:0.81
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:101482 original size:20 final size:20
Alignment explanation
Indices: 101457--101505 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
101447 TCCCAGATGA
101457 ATCGATACAAAG-ATCAATGT
1 ATCGATACAAAGAAT-AATGT
**
101477 ATCGATACATTGAATAATGT
1 ATCGATACAAAGAATAATGT
101497 ATCGATACA
1 ATCGATACA
101506 TTTCCTTGGC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (20 bp):
ATCGATACAAAGAATAATGT
Found at i:106792 original size:20 final size:19
Alignment explanation
Indices: 106766--106840 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 19
106756 AAAAAGTCAG
106766 AATGTATCGATACATTGAA
1 AATGTATCGATACATTGAA
* * *
106785 GGATGTATTGATACATTCATA
1 -AATGTATCGATACATTGA-A
* *
106806 CATGTATCAATACATTGAAA
1 AATGTATCGATACATTG-AA
106826 AATGTATCGATACAT
1 AATGTATCGATACAT
106841 CTGGGTAAAA
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
20 42 0.95
21 2 0.05
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (19 bp):
AATGTATCGATACATTGAA
Found at i:106862 original size:31 final size:31
Alignment explanation
Indices: 106826--106902 Score: 154
Period size: 31 Copynumber: 2.5 Consensus size: 31
106816 TACATTGAAA
106826 AATGTATCGATACATCTGGGTAAAAAGACAG
1 AATGTATCGATACATCTGGGTAAAAAGACAG
106857 AATGTATCGATACATCTGGGTAAAAAGACAG
1 AATGTATCGATACATCTGGGTAAAAAGACAG
106888 AATGTATCGATACAT
1 AATGTATCGATACAT
106903 TCATACATGT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 46 1.00
ACGTcount: A:0.42, C:0.13, G:0.21, T:0.25
Consensus pattern (31 bp):
AATGTATCGATACATCTGGGTAAAAAGACAG
Found at i:106914 original size:20 final size:20
Alignment explanation
Indices: 106888--106942 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
106878 AAAAAGACAG
*
106888 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
106908 CATGTATCGATTCATTGAAA
1 AATGTATCGATACATTCAAA
106928 AATGTATCGATACAT
1 AATGTATCGATACAT
106943 ATAGGTAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.35
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:106932 original size:71 final size:71
Alignment explanation
Indices: 106857--107024 Score: 291
Period size: 71 Copynumber: 2.4 Consensus size: 71
106847 AAAAAGACAG
* * *
106857 AATGTATCGATACATCTGGGTAAAAAGACAGAATGTATCGATACATTCATACATGTATCGATTCA
1 AATGTATCGATACATCTAGGTAAAAAGACAGAATGTATCGATACATTCATACACGTATCGATACA
106922 TTGAAA
66 TTGAAA
*
106928 AATGTATCGATACATATAGGTAAAAAGACAGAATGTATCGATACATTCATACACGTATCGATACA
1 AATGTATCGATACATCTAGGTAAAAAGACAGAATGTATCGATACATTCATACACGTATCGATACA
106993 TTGAAA
66 TTGAAA
*
106999 AATGTATCGATAGATCTAGGTAAAAA
1 AATGTATCGATACATCTAGGTAAAAA
107025 TATGACTTTT
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
71 91 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.28
Consensus pattern (71 bp):
AATGTATCGATACATCTAGGTAAAAAGACAGAATGTATCGATACATTCATACACGTATCGATACA
TTGAAA
Found at i:106963 original size:102 final size:102
Alignment explanation
Indices: 106787--106973 Score: 329
Period size: 102 Copynumber: 1.8 Consensus size: 102
106777 ACATTGAAGG
* * *
106787 ATGTATTGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATCTGGGTAAAAA
1 ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATATAGGTAAAAA
106852 GACAGAATGTATCGATACATCTGGGTAAAAAGACAGA
66 GACAGAATGTATCGATACATCTGGGTAAAAAGACAGA
* *
106889 ATGTATCGATACATTCATACATGTATCGATTCATTGAAAAATGTATCGATACATATAGGTAAAAA
1 ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATATAGGTAAAAA
106954 GACAGAATGTATCGATACAT
66 GACAGAATGTATCGATACAT
106974 TCATACACGT
Statistics
Matches: 80, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
102 80 1.00
ACGTcount: A:0.42, C:0.13, G:0.17, T:0.29
Consensus pattern (102 bp):
ATGTATCGATACATTCATACATGTATCAATACATTGAAAAATGTATCGATACATATAGGTAAAAA
GACAGAATGTATCGATACATCTGGGTAAAAAGACAGA
Found at i:107005 original size:20 final size:20
Alignment explanation
Indices: 106959--107010 Score: 68
Period size: 20 Copynumber: 2.6 Consensus size: 20
106949 AAAAAGACAG
*
106959 AATGTATCGATACATTCATA
1 AATGTATCGATACATTCAAA
* * *
106979 CACGTATCGATACATTGAAA
1 AATGTATCGATACATTCAAA
106999 AATGTATCGATA
1 AATGTATCGATA
107011 GATCTAGGTA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.13, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTCAAA
Found at i:117601 original size:13 final size:13
Alignment explanation
Indices: 117583--117610 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
117573 ATACAAAGAT
117583 CAATGTATCGATA
1 CAATGTATCGATA
117596 CAATGTATCGATA
1 CAATGTATCGATA
117609 CA
1 CA
117611 TTTGAGTAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:118662 original size:43 final size:43
Alignment explanation
Indices: 118600--118736 Score: 159
Period size: 43 Copynumber: 3.1 Consensus size: 43
118590 CTTAAGGATG
*
118600 AAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTA
* * * *
118643 AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAA
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG-TTTTA
*
118687 AGATGAAGATGCCAATGTGCTGATTCAAGG-CAGCGGCATTGGTTTTA
1 A-A-G--G-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTA
118734 AAG
1 AAG
118737 ATGACAAAGG
Statistics
Matches: 78, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
43 35 0.45
44 4 0.05
45 2 0.03
46 2 0.03
47 4 0.05
48 11 0.14
49 20 0.26
ACGTcount: A:0.29, C:0.16, G:0.28, T:0.27
Consensus pattern (43 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTA
Found at i:118794 original size:192 final size:193
Alignment explanation
Indices: 118457--118829 Score: 502
Period size: 192 Copynumber: 1.9 Consensus size: 193
118447 CGAAGAATGA
* *
118457 CAATGTGCTGATTCATGGCCAAGCGACATTTAGACTTAAAGAAAAATGCCAATGTGCTGAGGCAA
1 CAATATGCTGATTCAAGGCCAAGCGACATTTAGACTTAAAGAAAAATGCCAATGTGCTGAGGCAA
* ** * *
118522 GGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGCCAATATGCTGATTCAAGGCCAATGATATT
66 GGCCAGCGACATTGGGCTTAAGAATGACAAAGACGCCAATATGCTGATTCAAGGCCAACGATATT
* *
118587 GGACTTAAGGATGAAGGTGCCAATGTGTTGATTCAAGGCCAGCGACATTGGTTTTAAAGGTGC
131 GGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAAAGGTGC
* * * **
118650 CAATATGCTGATTCAAGGCC-AGCGATA-TTGGACTTAAAGATGAAGATGCCAATGTGCTGATTC
1 CAATATGCTGATTCAAGGCCAAGCGACATTTAGACTTAAAGA--AAAATGCCAATGTGCTGAGGC
* ** * * *
118713 AAGG-CAGCGGCATTGGTTTTAA-AGATGACAAAGGCGTCAATATGCTGATTCAAGGCCAGCGAT
64 AAGGCCAGCGACATTGGGCTTAAGA-ATGACAAAGACGCCAATATGCTGATTCAAGGCCAACGAT
*
118776 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGG
128 ATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGG
118830 ACTTAAGGAT
Statistics
Matches: 156, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
191 13 0.08
192 103 0.66
193 40 0.26
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (193 bp):
CAATATGCTGATTCAAGGCCAAGCGACATTTAGACTTAAAGAAAAATGCCAATGTGCTGAGGCAA
GGCCAGCGACATTGGGCTTAAGAATGACAAAGACGCCAATATGCTGATTCAAGGCCAACGATATT
GGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTTTTAAAGGTGC
Found at i:118841 original size:49 final size:49
Alignment explanation
Indices: 118457--118845 Score: 373
Period size: 49 Copynumber: 8.0 Consensus size: 49
118447 CGAAGAATGA
* * **
118457 CAATGTGCTGATTCATGGCCAAGCGACATTTAGACTTAAAGA--AAAATGC
1 CAATGTGCTGATTCAAGGCC-AGCGACA-TTGGACTTAAAGATGAAGGTGC
** * * * *
118506 CAATGTGCTGAGGCAAGGCCAGCGACATTGGGCTTAGGAATGTTAAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTA--AA-GATGAAGGTGC
* ** * *
118558 CAATATGCTGATTCAAGGCCAATGATATTGGACTTAAGGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
118607 CAATGTGTTGATTCAAGGCCAGCGACATTGG--TT----TTAAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* * *
118650 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGATGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* ** * *
118699 CAATGTGCTGATTCAAGG-CAGCGGCATTGGTTTTAAAGATGACAAAGGCGT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATG---AAGGTGC
* *
118750 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
* *
118799 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTAAGGATGAAGGT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGT
118846 CCCCACATGT
Statistics
Matches: 277, Mismatches: 48, Indels: 30
0.78 0.14 0.08
Matches are distributed among these distances:
43 36 0.13
45 2 0.01
47 9 0.03
48 26 0.09
49 127 0.46
50 2 0.01
51 21 0.08
52 54 0.19
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (49 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAAGGTGC
Found at i:121233 original size:20 final size:21
Alignment explanation
Indices: 121208--121262 Score: 67
Period size: 20 Copynumber: 2.7 Consensus size: 21
121198 TAAAACACAG
* **
121208 AATGTATCGATATAATGAA-A
1 AATGTATCGATACAAACAATA
*
121228 AATGTATCGAAACAAACAATA
1 AATGTATCGATACAAACAATA
121249 AATGTATCGATACA
1 AATGTATCGATACA
121263 TTTCCTTAGC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 15 0.52
21 14 0.48
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.25
Consensus pattern (21 bp):
AATGTATCGATACAAACAATA
Found at i:125452 original size:155 final size:154
Alignment explanation
Indices: 125172--125480 Score: 395
Period size: 155 Copynumber: 2.0 Consensus size: 154
125162 ATGAAAACGT
* * * *
125172 CTCTAAGGGATACCTTCGACGTAGAAGTACTTGATACCGCTGAAGAACTTAAAAAGGATTTAGAT
1 CTCTAAGGGATACCTTCGACGTAGAAGTACTCGATACCGCTAAAGAACTTAAAAAGGATTAAAAT
* * *
125237 GGGACGAACCTATCCTAAATACCCACCTTCGGCATAAAAGCAAACCCCATGATAACCTAGGACTC
66 GGGACGAACCTATCCTAAATACCCACATTCAGCATAAAAGCAAACCCCATGACAACCTAGGACTC
*
125302 GGTTCTAGAAAATTACCAAAATGC
131 GGTTCTAGAAAATTACAAAAATGC
* * * * *
125326 CTCTAA-GGATATCTTCGACGTAGAAGTGCTCGATATCTCTAAAGGACTTAAAAAGGATTACAAA
1 CTCTAAGGGATACCTTCGACGTAGAAGTACTCGATACCGCTAAAGAACTTAAAAAGGATT--AAA
* * * * ** *
125390 ATGGGATGAACCTATCCTAAATACCCACATTCAGCATTAAAGCAGACTCGGTGACAATCTAGGAC
64 ATGGGACGAACCTATCCTAAATACCCACATTCAGCATAAAAGCAAACCCCATGACAACCTAGGAC
* *
125455 TTGGTTCTAGAAAGTTACAAAAATGC
129 TCGGTTCTAGAAAATTACAAAAATGC
125481 TCTTGAGGGA
Statistics
Matches: 131, Mismatches: 22, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
153 46 0.35
154 6 0.05
155 79 0.60
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (154 bp):
CTCTAAGGGATACCTTCGACGTAGAAGTACTCGATACCGCTAAAGAACTTAAAAAGGATTAAAAT
GGGACGAACCTATCCTAAATACCCACATTCAGCATAAAAGCAAACCCCATGACAACCTAGGACTC
GGTTCTAGAAAATTACAAAAATGC
Found at i:127252 original size:10 final size:10
Alignment explanation
Indices: 127237--127294 Score: 55
Period size: 10 Copynumber: 5.7 Consensus size: 10
127227 AATCCCACCA
127237 TTTTTCTATT
1 TTTTTCTATT
*
127247 TTTTTCTTTT
1 TTTTTCTATT
*
127257 TTCTTTCTCTT
1 TT-TTTCTATT
127268 TTTTTCCT-TT
1 TTTTT-CTATT
* *
127278 TTTTTCCAAT
1 TTTTTCTATT
127288 TTTTTCT
1 TTTTTCT
127295 CAAAGTTTCT
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
9 1 0.03
10 28 0.70
11 11 0.28
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTCTATT
Found at i:127263 original size:21 final size:20
Alignment explanation
Indices: 127237--127294 Score: 71
Period size: 21 Copynumber: 2.9 Consensus size: 20
127227 AATCCCACCA
127237 TTTTTCTATTTTTTTCTTTT
1 TTTTTCTATTTTTTTCTTTT
* *
127257 TTCTTTCTCTTTTTTTCCTTT
1 TT-TTTCTATTTTTTTCTTTT
* *
127278 TTTTTCCAATTTTTTCT
1 TTTTTCTATTTTTTTCT
127295 CAAAGTTTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 13 0.42
21 18 0.58
ACGTcount: A:0.05, C:0.17, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTCTATTTTTTTCTTTT
Found at i:127281 original size:11 final size:10
Alignment explanation
Indices: 127237--127283 Score: 58
Period size: 10 Copynumber: 4.6 Consensus size: 10
127227 AATCCCACCA
*
127237 TTTTTCTATT
1 TTTTTCTTTT
127247 TTTTTCTTTT
1 TTTTTCTTTT
*
127257 TTCTTTCTCTT
1 TT-TTTCTTTT
*
127268 TTTTTCCTTT
1 TTTTTCTTTT
127278 TTTTTC
1 TTTTTC
127284 CAATTTTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
10 23 0.72
11 9 0.28
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:127461 original size:24 final size:24
Alignment explanation
Indices: 127417--127462 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
127407 CATTTTCCCT
*
127417 CCTTTTTTATTCTTTTCTTTTATG
1 CCTTTTTTATTCTTGTCTTTTATG
*
127441 CCTTTTTT-TTGTTGTCATTTTA
1 CCTTTTTTATTCTTGTC-TTTTA
127463 GGACTGGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.32
24 13 0.68
ACGTcount: A:0.09, C:0.15, G:0.07, T:0.70
Consensus pattern (24 bp):
CCTTTTTTATTCTTGTCTTTTATG
Found at i:129712 original size:73 final size:73
Alignment explanation
Indices: 129586--129730 Score: 193
Period size: 73 Copynumber: 2.0 Consensus size: 73
129576 GGCCTAAGTT
* * * *
129586 GACGGGCAGATAAAGGATAAAGAAGTCTCCCAGGTCTGAGCTGACAAGCAGACAAAAGATGAAGA
1 GACGGGCAGACAAAAGATAAAGAAGTCTCCAAGATCTGAGCTGACAAGCAGACAAAAGATGAAGA
129651 AGTCTCTC
66 AGTCTCTC
* * * * *
129659 GACGGGCAGGCAAAAGATGAAGAAGTCTTCCAAGAT-TGAGCTGATAGGGAGACAAAAGATGAAG
1 GACGGGCAGACAAAAGATAAAGAAGTC-TCCAAGATCTGAGCTGACAAGCAGACAAAAGATGAAG
129723 AAGTCTCT
65 AAGTCTCT
129731 GAGTCTGAGC
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
73 56 0.90
74 6 0.10
ACGTcount: A:0.39, C:0.17, G:0.29, T:0.16
Consensus pattern (73 bp):
GACGGGCAGACAAAAGATAAAGAAGTCTCCAAGATCTGAGCTGACAAGCAGACAAAAGATGAAGA
AGTCTCTC
Found at i:129765 original size:83 final size:84
Alignment explanation
Indices: 129670--129852 Score: 221
Period size: 83 Copynumber: 2.2 Consensus size: 84
129660 ACGGGCAGGC
* *
129670 AAAA-GATGAAGAAGTCTTCCAAGATTGAGCTGA-TAGGGAGACAAAAGATGAAGAAGTCT-CTG
1 AAAAGGATGAAGAAGTCTCCCAAGATTAAGCTGACTA-GGAGACAAAAGATGAAGAAGTCTCCTG
* * *
129732 AGTCTGAGCCGATGGGCAAA
65 AGTCTAAACCGACGGGCAAA
* * * *
129752 AAAAGGATGAAGAAGTCTCCCAAGTTTAAGCTGACTAGTAGACAATAGATGAAGAAGTCTCCTGG
1 AAAAGGATGAAGAAGTCTCCCAAGATTAAGCTGACTAGGAGACAAAAGATGAAGAAGTCTCCTGA
*
129817 GTCTAAACCGACGGGCAGA
66 GTCTAAACCGACGGGCAAA
* *
129836 CAAAGG-TGAAAAAGTCT
1 AAAAGGATGAAGAAGTCT
129853 GCCGAGTCTG
Statistics
Matches: 86, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
82 4 0.05
83 57 0.66
84 25 0.29
ACGTcount: A:0.39, C:0.15, G:0.27, T:0.19
Consensus pattern (84 bp):
AAAAGGATGAAGAAGTCTCCCAAGATTAAGCTGACTAGGAGACAAAAGATGAAGAAGTCTCCTGA
GTCTAAACCGACGGGCAAA
Found at i:129895 original size:125 final size:125
Alignment explanation
Indices: 129708--129980 Score: 316
Period size: 125 Copynumber: 2.2 Consensus size: 125
129698 GCTGATAGGG
* * * **
129708 AGACAAAAGATGAAGAAGTCTCTGAGTCTGAGCCGATGGGCAAAAAAAGGATGAAGAAGTCTCCC
1 AGACAAAAGATGAAAAAGTCTCCGAGTCTGAGCCAATGGGCAAAAAAAGGACAAAGAAGTCTCCC
* * * * *
129773 AAGT-TTAAGCTGACTAGTAGACAATAGATGAAGAAGTCTCCTGGGTCTAAACCGACGGGC
66 -AGTGTTAAGCTGACGAGCAGACAAAAGATGAAAAAGTCTCCCGGGTCTAAACCGACGGGC
* * *
129833 AGAC-AAAGGTGAAAAAGTCTGCCGAGTCTGAGCCAATGGGTAAACAAAGGACAAAGAAGTCTCC
1 AGACAAAAGATGAAAAAGTCT-CCGAGTCTGAGCCAATGGGCAAAAAAAGGACAAAGAAGTCTCC
* * * * ** **
129897 CAGTGTTAAGCTGACGGGCAGAGAAAAGATGAAAAAGTCTCCCGGGTTTGAGTCGACAAGC
65 CAGTGTTAAGCTGACGAGCAGACAAAAGATGAAAAAGTCTCCCGGGTCTAAACCGACGGGC
*
129958 AGACAAAAGATGAAGAAGTCTCC
1 AGACAAAAGATGAAAAAGTCTCC
129981 CAGGTCTAAG
Statistics
Matches: 122, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
124 17 0.14
125 91 0.75
126 14 0.11
ACGTcount: A:0.38, C:0.18, G:0.27, T:0.17
Consensus pattern (125 bp):
AGACAAAAGATGAAAAAGTCTCCGAGTCTGAGCCAATGGGCAAAAAAAGGACAAAGAAGTCTCCC
AGTGTTAAGCTGACGAGCAGACAAAAGATGAAAAAGTCTCCCGGGTCTAAACCGACGGGC
Found at i:130069 original size:42 final size:41
Alignment explanation
Indices: 129658--130226 Score: 252
Period size: 42 Copynumber: 13.7 Consensus size: 41
129648 AGAAGTCTCT
** *
129658 CGACGGGCAGGCAAAAGATGAAGAAGTCTTCCAAGAT-TGAGC
1 CGACGGGCAAACAAAAGATGAAGAAGTC-TCCGAG-TCTGAGC
* * * *
129700 TGATAGGG-AGACAAAAGATGAAGAAGTCTCTGAGTCTGAGC
1 CGA-CGGGCAAACAAAAGATGAAGAAGTCTCCGAGTCTGAGC
* * * *
129741 CGATGGGCAAA-AAAAGGATGAAGAAGTCTCCCAAGTTTAAGC
1 CGACGGGCAAACAAAA-GATGAAGAAGTCT-CCGAGTCTGAGC
* ** * * * * * *
129783 TGACTAGTAGACAATAGATGAAGAAGTCTCCTGGGTCTAAAC
1 CGACGGGCAAACAAAAGATGAAGAAGTCTCC-GAGTCTGAGC
* * *
129825 CGACGGGCAGAC-AAAGGTGAAAAAGTCTGCCGAGTCTGAGC
1 CGACGGGCAAACAAAAGATGAAGAAGTCT-CCGAGTCTGAGC
* * * * ** * * *
129866 CAATGGGTAAACAAAGGACAAAGAAGTCTCCCAGTGTTAAGC
1 CGACGGGCAAACAAAAGATGAAGAAGTCTCCGAGT-CTGAGC
* * * * * * *
129908 TGACGGGCAGAGAAAAGATGAAAAAGTCTCCCGGGTTTGAGT
1 CGACGGGCAAACAAAAGATGAAGAAGTCT-CCGAGTCTGAGC
** * * *
129950 CGACAAGCAGACAAAAGATGAAGAAGTCTCCCAGGTCTAAG-
1 CGACGGGCAAACAAAAGATGAAGAAGTCTCCGA-GTCTGAGC
* * * *
129991 CAACGAGCAAACAAAAGGT-AATGAAATCTCCTGAGTCTGAGC
1 CGACGGGCAAACAAAAGATGAA-GAAGTCTCC-GAGTCTGAGC
* * * *
130033 CGGCAGGCAAACAAAAGATGAAGAAGTCTCTCGAGTCTAAGT
1 CGACGGGCAAACAAAAGATGAAGAAGTCTC-CGAGTCTGAGC
* * * * * * * ** * *
130075 CGACAGACAGACAAAGGATAAAAAAGTTTTTTGGGTCTGAAC
1 CGACGGGCAAACAAAAGATGAAGAAG-TCTCCGAGTCTGAGC
* * * *
130117 CGATGGGCAAA-AAAAGATAAAGAAGTCTCTCAAGTCTGAGT
1 CGACGGGCAAACAAAAGATGAAGAAGTCTC-CGAGTCTGAGC
* * * * * *
130158 CGAGGGGCAAAAAAAAGATTAAAAAGTCTCCCAGGTCTAAGC
1 CGACGGGCAAACAAAAGATGAAGAAGTCTCCGA-GTCTGAGC
* * * *
130200 TGATGGGTAGACAAAAGATGAAGAAGT
1 CGACGGGCAAACAAAAGATGAAGAAGT
130227 TTCCACAGTC
Statistics
Matches: 384, Mismatches: 122, Indels: 42
0.70 0.22 0.08
Matches are distributed among these distances:
40 12 0.03
41 122 0.32
42 235 0.61
43 15 0.04
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (41 bp):
CGACGGGCAAACAAAAGATGAAGAAGTCTCCGAGTCTGAGC
Found at i:130384 original size:42 final size:42
Alignment explanation
Indices: 130338--130513 Score: 142
Period size: 42 Copynumber: 4.2 Consensus size: 42
130328 AAGGATAAAT
* * *
130338 AAGTCTCTCGAGTCAGAGCCTACGGTTAGACAAAAGATGAAG
1 AAGTCTCCCGAGTCAGAGCCTACGGTCAGACAAAAGATGAAA
* * * * * * *
130380 AAGTCTCTCGAGTCTGAGTCGATGGGCAGACAAAAGATAAAA
1 AAGTCTCCCGAGTCAGAGCCTACGGTCAGACAAAAGATGAAA
* * *
130422 AAGTCTCCCAATTCTA-AGCCCATA-GGT-AGACAAAAGATGAAG
1 AAGTCTCCCGAGTC-AGAG-CC-TACGGTCAGACAAAAGATGAAA
* * * * *
130464 AAGTCTCCCGGGTCTGAGCCAACGATCAGAAAAAAGATGAAA
1 AAGTCTCCCGAGTCAGAGCCTACGGTCAGACAAAAGATGAAA
130506 AAGTCTCC
1 AAGTCTCC
130514 AGGGTCAAAG
Statistics
Matches: 103, Mismatches: 25, Indels: 12
0.74 0.18 0.09
Matches are distributed among these distances:
40 1 0.01
41 4 0.04
42 94 0.91
43 3 0.03
44 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.23, T:0.18
Consensus pattern (42 bp):
AAGTCTCCCGAGTCAGAGCCTACGGTCAGACAAAAGATGAAA
Found at i:130677 original size:83 final size:83
Alignment explanation
Indices: 130506--130760 Score: 288
Period size: 83 Copynumber: 3.1 Consensus size: 83
130496 AAAGATGAAA
* * *
130506 AAGTCTCCAGGGTCAAAGCCGACAGGCAGACT-AAGAGT-A-AAGTCTCTAGGGTCAAAGCCGAC
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGA-TAAGAAGTCTCCAGGGTCAAAGCCGAT
130568 AAGCAGACTAAAGGTAAAG
65 AAGCAGACTAAAGGTAAAG
* * *
130587 AATTCTCCAAGTTCAAAGCCGACAGGCACACTAAAGATAAAGAAGTCTCCAGGGTC-AAGCCGAT
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGAT-AAGAAGTCTCCAGGGTCAAAGCCGAT
*
130651 AAGCAGACTGAAGGTAAAG
65 AAGCAGACTAAAGGTAAAG
* * * * *
130670 AAGTCTCCAAGGTCAAAGCCAATAGGCAGACTAAGGGTGAAGAAGTCTCTCA-GCTCAAAGCCGA
1 AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGAT-AAGAAGTCTC-CAGGGTCAAAGCCGA
* *
130734 TAGGCAGAC-AAAGAGTGAAG
64 TAAGCAGACTAAAG-GTAAAG
*
130754 GAGTCTC
1 AAGTCTC
130761 TTGAGTCAAA
Statistics
Matches: 147, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
81 29 0.20
82 4 0.03
83 73 0.50
84 41 0.28
ACGTcount: A:0.38, C:0.21, G:0.26, T:0.15
Consensus pattern (83 bp):
AAGTCTCCAAGGTCAAAGCCGACAGGCAGACTAAAGATAAGAAGTCTCCAGGGTCAAAGCCGATA
AGCAGACTAAAGGTAAAG
Found at i:130713 original size:125 final size:122
Alignment explanation
Indices: 130496--130752 Score: 297
Period size: 125 Copynumber: 2.1 Consensus size: 122
130486 CGATCAGAAA
* * *
130496 AAAGATGAAAAAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGAGTAAAGTCTCTAGGGTCAA
1 AAAGATGAAAAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTAAGAGTAAAGTCTCCAAGGTCAA
* * *
130561 AGCCGACAAGCAGACTAAAGGTAAAGAATTCTC-CAAGTTCAAAGCCGACAGGCACAC
66 AGCCAACAAGCAGACTAAAGGTAAAGAAGTCTCTC-AGCTCAAAGCCGACAGGCACAC
*
130618 TAAAGAT-AAAGAAGTCTCCAGGGTC-AAGCCGATAAGCAGACTGAAG-GTAAAGAAGTCTCCAA
1 -AAAGATGAAA-AAGTCTCCAGGGTCAAAGCCGACAAGCAGACT-AAGAGT--A-AAGTCTCCAA
* * * * * *
130680 GGTCAAAGCCAATAGGCAGACTAAGGGTGAAGAAGTCTCTCAGCTCAAAGCCGATAGGCAGAC
60 GGTCAAAGCCAACAAGCAGACTAAAGGTAAAGAAGTCTCTCAGCTCAAAGCCGACAGGCACAC
130743 AAAGAGTGAA
1 AAAGA-TGAA
130753 GGAGTCTCTT
Statistics
Matches: 113, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
122 20 0.18
123 23 0.20
124 6 0.05
125 61 0.54
126 3 0.03
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.14
Consensus pattern (122 bp):
AAAGATGAAAAAGTCTCCAGGGTCAAAGCCGACAAGCAGACTAAGAGTAAAGTCTCCAAGGTCAA
AGCCAACAAGCAGACTAAAGGTAAAGAAGTCTCTCAGCTCAAAGCCGACAGGCACAC
Found at i:130761 original size:42 final size:41
Alignment explanation
Indices: 130506--131022 Score: 345
Period size: 42 Copynumber: 12.4 Consensus size: 41
130496 AAAGATGAAA
* * *
130506 AAGTCTCCAGGGTCAAAGCCGACAGGCAGACTAAGAGT--A-
1 AAGTCTCCA-GGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* * *
130545 AAGTCTCTAGGGTCAAAGCCGACAAGCAGACTAAA-GGTAAAG
1 AAGTCTCCA-GGTCAAAGCCGATAGGCAGAC-AAAGGGTAAAG
* * * * *
130587 AATTCTCCAAGTTCAAAGCCGACAGGCACACTAAA-GATAAAG
1 AAGTCTCC-AGGTCAAAGCCGATAGGCAGAC-AAAGGGTAAAG
* *
130629 AAGTCTCCAGGGTC-AAGCCGATAAGCAGACTGAA-GGTAAAG
1 AAGTCTCCA-GGTCAAAGCCGATAGGCAGAC-AAAGGGTAAAG
* * *
130670 AAGTCTCCAAGGTCAAAGCCAATAGGCAGACTAAGGGTGAAG
1 AAGTCTCC-AGGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* * *
130712 AAGTCTCTCAGCTCAAAGCCGATAGGCAGACAAAGAGTGAAG
1 AAGTCTC-CAGGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* ** * * *
130754 GAGTCTCTTGAGTCAAAGCTGAT-GAGTAAACAAAGGGTAAAG
1 AAGTCTCCAG-GTCAAAGCCGATAG-GCAGACAAAGGGTAAAG
* * * * * * *
130796 AAGTCTCTCGGGTCAAAGCCAATACGCAAAAAAAGTGTAAAA
1 AAGTCTC-CAGGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* * * *
130838 AAATCTCTCAGGTCAAAGCTGA-CGGACAGACATAGGGTGAAAG
1 AAGTCTC-CAGGTCAAAGCCGATAGG-CAGACAAAGGGT-AAAG
* * * *
130881 -AGTCTCCCGTGTCAAAGCTGATGGGCAAACAAAGGGTAAAG
1 AAGTCTCCAG-GTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* * * * *
130922 GAGTCTCCTAGGTCAAAGCTGATGGGTAGACAAAGGGTGAAG
1 AAGTCTCC-AGGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
* * *
130964 GAGTCTCCTAGGTCAAAGCCAATGGGCAGACAAAGGGTGAAAG
1 AAGTCTCC-AGGTCAAAGCCGATAGGCAGACAAAGGGT-AAAG
131007 -AGTCTCCGAGGTCAAA
1 AAGTCTCC-AGGTCAAA
131023 CTCAACCAAT
Statistics
Matches: 388, Mismatches: 69, Indels: 39
0.78 0.14 0.08
Matches are distributed among these distances:
39 31 0.08
40 2 0.01
41 47 0.12
42 296 0.76
43 12 0.03
ACGTcount: A:0.38, C:0.19, G:0.27, T:0.16
Consensus pattern (41 bp):
AAGTCTCCAGGTCAAAGCCGATAGGCAGACAAAGGGTAAAG
Found at i:130977 original size:126 final size:125
Alignment explanation
Indices: 130663--131169 Score: 395
Period size: 126 Copynumber: 4.0 Consensus size: 125
130653 GCAGACTGAA
* * *
130663 GGTAAAGAAGTCTCCAAGGTCAAAGCCAATAGGCAGACTAAGGGTGAAGAAGTCTCTCAGCTCAA
1 GGTAAAGAAGTCTCCTAGGTCAAAGCCAATAGGCAGACAAAGGGTGAAGAAGTCTCTCAGGTCAA
* * ** *
130728 AGCCGATAGGCAGACAAAGAGTGAAGGAGTCTCTTGAGTCAAAGCTGATGAGTAAACAAAG
66 AGCCGA-AGGCAGACAAAGGGTGAAAGAGTCTCCCGAGTCAAAGCTGATGAGCAAACAAAG
* * * * * * * *
130789 GGTAAAGAAGTCT-CTCGGGTCAAAGCCAATACGCAAAAAAAGTGTAAAAAAATCTCTCAGGTCA
1 GGTAAAGAAGTCTCCT-AGGTCAAAGCCAATAGGCAGACAAAGGGTGAAGAAGTCTCTCAGGTCA
* * * * *
130853 AAGCTGACGGACAGACATAGGGTGAAAGAGTCTCCCGTGTCAAAGCTGATGGGCAAACAAAG
65 AAGCCGAAGG-CAGACAAAGGGTGAAAGAGTCTCCCGAGTCAAAGCTGATGAGCAAACAAAG
* ** * * *
130915 GGTAAAGGAGTCTCCTAGGTCAAAGCTGATGGGTAGACAAAGGGTGAAGGAGTCTC-CTAGGTCA
1 GGTAAAGAAGTCTCCTAGGTCAAAGCCAATAGGCAGACAAAGGGTGAAGAAGTCTCTC-AGGTCA
* *
130979 AAGCC-AATGGGCAGACAAAGGGTGAAAGAGTCT-CCGAGGTCAAA-CTCA--ACCAATAGACAA
65 AAGCCGAA--GGCAGACAAAGGGTGAAAGAGTCTCCCGA-GTCAAAGCTGATGAGC-A-A-ACAA
131039 AG
124 AG
* * * ** * * * * *
131041 GGTGAAGGAGTCT-CTTGAGTCAAAGCCAACGGGCAGACAAAAGTTGAAGGAA-TCTCCCACGTT
1 GGTAAAGAAGTCTCCTAG-GTCAAAGCCAATAGGCAGACAAAGGGTGAA-GAAGTCTCTCAGGTC
* * * * * * * *
131104 AAAGCC-AACGGGTAGTCAAAGGGTGAAAGAGTCTCTCGGGTCAAAGTTGATGGGTAGACAAAG
64 AAAGCCGAA--GGCAGACAAAGGGTGAAAGAGTCTCCCGAGTCAAAGCTGATGAGCAAACAAAG
131167 GGT
1 GGT
131170 GAAGGGAATA
Statistics
Matches: 300, Mismatches: 64, Indels: 34
0.75 0.16 0.09
Matches are distributed among these distances:
123 1 0.00
124 1 0.00
125 15 0.05
126 271 0.90
127 11 0.04
128 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (125 bp):
GGTAAAGAAGTCTCCTAGGTCAAAGCCAATAGGCAGACAAAGGGTGAAGAAGTCTCTCAGGTCAA
AGCCGAAGGCAGACAAAGGGTGAAAGAGTCTCCCGAGTCAAAGCTGATGAGCAAACAAAG
Found at i:131163 original size:84 final size:84
Alignment explanation
Indices: 130671--131174 Score: 361
Period size: 84 Copynumber: 6.0 Consensus size: 84
130661 AAGGTAAAGA
* ** * * * * *
130671 AGTCTCCAAGGTCAAAGCCAATAGGCAGACTAAGGGTG-AAGAAGTCTCTCAGCTCAAAGCCGAT
1 AGTCTCCCAGGTCAAAGCCAACGGGTAGACAAAGGGTGAAAG-AGTCTCTCGGGTCAAAGCCAAT
* *
130735 AGGCAGACAAAGAGTGAAGG
65 GGGCAGACAAAGGGTGAAGG
** ** * * *
130755 AGTCT-CTTGAGTCAAAGCTGATGAGTAAACAAAGGGT-AAAGAAGTCTCTCGGGTCAAAGCCAA
1 AGTCTCCCAG-GTCAAAGCCAACGGGTAGACAAAGGGTGAAAG-AGTCTCTCGGGTCAAAGCCAA
** * * * * **
130818 TACGCAAAAAAAGTGTAAAAA
64 TGGGCAGACAAAGGGTGAAGG
* * ** ** * * * **
130839 AATCTCTCAGGTCAAAGCTGACGGACAGACATAGGGTGAAAGAGTCTCCCGTGTCAAAGCTGATG
1 AGTCTCCCAGGTCAAAGCCAACGGGTAGACAAAGGGTGAAAGAGTCTCTCGGGTCAAAGCCAATG
* *
130904 GGCAAACAAAGGGTAAAGG
66 GGCAGACAAAGGGTGAAGG
* ** * * *
130923 AGTCTCCTAGGTCAAAGCTGATGGGTAGACAAAGGGTGAAGGAGTCTC-CTAGGTCAAAGCCAAT
1 AGTCTCCCAGGTCAAAGCCAACGGGTAGACAAAGGGTGAAAGAGTCTCTC-GGGTCAAAGCCAAT
*
130987 GGGCAGACAAAGGGTGAAAG
65 GGGCAGACAAAGGGTGAAGG
* *** * * * *
131007 AGTCTCCGAGGTCAAA-CTCAACCAATAGACAAAGGGTGAAGGAGTCTCTTGAGTCAAAGCCAAC
1 AGTCTCCCAGGTCAAAGC-CAACGGGTAGACAAAGGGTGAAAGAGTCTCTCGGGTCAAAGCCAAT
* *
131071 GGGCAGACAAAAGTTGAAGG
65 GGGCAGACAAAGGGTGAAGG
* * * * ***
131091 AATCTCCCACGTTAAAGCCAACGGGTAGTCAAAGGGTGAAAGAGTCTCTCGGGTCAAAGTTGATG
1 AGTCTCCCAGGTCAAAGCCAACGGGTAGACAAAGGGTGAAAGAGTCTCTCGGGTCAAAGCCAATG
*
131156 GGTAGACAAAGGGTGAAGG
66 GGCAGACAAAGGGTGAAGG
131175 GAATATAGGG
Statistics
Matches: 326, Mismatches: 86, Indels: 16
0.76 0.20 0.04
Matches are distributed among these distances:
83 4 0.01
84 316 0.97
85 6 0.02
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (84 bp):
AGTCTCCCAGGTCAAAGCCAACGGGTAGACAAAGGGTGAAAGAGTCTCTCGGGTCAAAGCCAATG
GGCAGACAAAGGGTGAAGG
Found at i:131172 original size:42 final size:42
Alignment explanation
Indices: 130680--131172 Score: 298
Period size: 42 Copynumber: 11.7 Consensus size: 42
130670 AAGTCTCCAA
* * * *
130680 GGTCAAAGCCAATAGGCAGACTAAGGGTG-AAGAAGTCTCTCA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAG-AGTCTCTCG
* * * * *
130722 GCTCAAAGCCGATAGGCAGACAAAGAGTGAAGGAGTCTCTTG
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* * * * *
130764 AGTCAAAGCTGATGAGTAAACAAAGGGT-AAAGAAGTCTCTCG
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAG-AGTCTCTCG
* ** * * * * * * *
130806 GGTCAAAGCCAATACGCAAAAAAAGTGTAAAAAAATCTCTCA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* * * * *
130848 GGTCAAAGCTGACGGACAGACATAGGGTGAAAGAGTCTCCCG
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* * * *
130890 TGTCAAAGCTGATGGGCAAACAAAGGGT-AAAGGAGTCTC-CTA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAA-GAGTCTCTC-G
* * * *
130932 GGTCAAAGCTGATGGGTAGACAAAGGGTGAAGGAGTCTC-CTA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTC-G
*
130974 GGTCAAAGCCAATGGGCAGACAAAGGGTGAAAGAGTCTC-CG
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* ***** * *
131015 AGGTCAAA-CTCAACCAATAGACAAAGGGTGAAGGAGTCTCTTG
1 -GGTCAAAGC-CGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* * * * * * * * *
131058 AGTCAAAGCCAACGGGCAGACAAAAGTTGAAGGAATCTCCCA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
* * * * * *
131100 CGTTAAAGCCAACGGGTAGTCAAAGGGTGAAAGAGTCTCTCG
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
** *
131142 GGTCAAAGTTGATGGGTAGACAAAGGGTGAA
1 GGTCAAAGCCGATGGGCAGACAAAGGGTGAA
131173 GGGAATATAG
Statistics
Matches: 348, Mismatches: 93, Indels: 20
0.75 0.20 0.04
Matches are distributed among these distances:
41 8 0.02
42 331 0.95
43 9 0.03
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.17
Consensus pattern (42 bp):
GGTCAAAGCCGATGGGCAGACAAAGGGTGAAAGAGTCTCTCG
Found at i:133639 original size:304 final size:303
Alignment explanation
Indices: 133229--134070 Score: 678
Period size: 305 Copynumber: 2.8 Consensus size: 303
133219 TACAAAATGA
* * ** * * *
133229 GATGAACCTATCCTAAATACTCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAG
1 GATGAACCTATCCTAAATACACCCT-TTGGCATAAAAGCGAACCCGATGACAACCTAGGACTGAG
* * ** * *
133294 TTTTAGAAAATTACAAAAATGTTCTTAGGGGATACCTTTGACATA-AAGTACCCGGCA-CTCTTA
65 TTCTAAAAAATTACAAAAATACTCTTAAGGGATACCTTTGAC-TAGAAGTACCCGACATC-CTTA
* *
133357 AAGGACTTAAAAAGGA-TA-A-AA-GGATGAACCTATCCTAAATGCACACCTTTGA-CATAAAAG
128 AAGGACTTAAAAAGGATTACAGAAGGGATGAACCTATCCTAAATACACA-CTTTCAGCATAAAAG
* * * * * * * *
133417 TGGACTCGGTGACGATCTAGGAGTTAGTT-TATAAAAATTATGAAAATGCCT-CTAGGGGATATC
192 CGGACTCGATGACAACCTAGGACTTAGTTCTA-AAAAATTA-CAAAAGGCCTCCTAGGGGATACC
* ** * *
133480 ATCGATGTAAAAGTATCTCGGTAACTC-TAAAGGACTTAAAAAG-ATAGAGATGG
255 ATCAACAT-AAAGTA-CCCGG-AACTCTTAAAGGACTTAAAAAGAATA-A-A-AG
* *
133533 GATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAACTCGATGACAACCTAGGACTCGA
1 GATGAACCTATCCTAAATACAC-CCTTTGGCATAAAAGCGAACCCGATGACAACCTAGGACT-GA
* * * * *
133598 -TTCTAAAAAATTACCAAAATACTCTTAAGGGATATCTTTGACTAGAAGTGCTCGATATCCTTAA
64 GTTCTAAAAAATTACAAAAATACTCTTAAGGGATACCTTTGACTAGAAGTACCCGACATCCTTAA
* * *
133662 AGGACTTAAAAATGATTACAGAATGGGATGAACCTATCCTAAATACCCACTTTCAGCATTAAAGC
129 AGGACTTAAAAAGGATTACAGAA-GGGATGAACCTATCCTAAATACACACTTTCAGCATAAAAGC
* * * *
133727 GGACTCGATGACAACCTAGGACTTAGTTCTAGAAAATTACAAAAGGGCTCCTAGGGGATACCTTT
193 GGACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACAAAAGGCCTCCTAGGGGATACCATC
*
133792 AACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATAAAAG
258 AACATAAAGTACCCGGAACTCTTAAAGGACTTAAAAAGAATAAAAG
* * * * *
133838 GATGAACCTATCCTAAATGCACACCTTTGGCATAAAAG-TAGACCCGGTGACGACCTAGGAGTTG
1 GATGAACCTATCCTAAATACAC-CCTTTGGCATAAAAGCGA-ACCCGATGACAACCTAGGA-CTG
* * ** * * * * * * ** *
133902 -GTTTTGAAAAATTATGAAAATGC-CTCTAGGGGATATCATCGA-TGCAAAAGTATCCCGGTA-A
63 AGTTCTAAAAAATTACAAAAATACTCT-TAAGGGATACCTTTGACT--AGAAGTA-CCCGACATC
* * * * * * *
133963 CTCTAAAGGACTTAAAAA-TATTAGAGATGGGATGAACCTATCCTAAATACCCACATTCGGTATA
124 CT-TAAAGGACTTAAAAAGGATTACAGAAGGGATGAACCTATCCTAAATACACACTTTCAGCATA
* * * * *
134027 AAAG-GGAACCCGATGACGACCTAAGAGTTGGTTCTAAAAAATTA
188 AAAGCGG-ACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTA
134071 TGAAAATGCC
Statistics
Matches: 439, Mismatches: 76, Indels: 45
0.78 0.14 0.08
Matches are distributed among these distances:
303 2 0.00
304 120 0.27
305 156 0.36
306 21 0.05
307 43 0.10
308 21 0.05
309 74 0.17
310 2 0.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.25
Consensus pattern (303 bp):
GATGAACCTATCCTAAATACACCCTTTGGCATAAAAGCGAACCCGATGACAACCTAGGACTGAGT
TCTAAAAAATTACAAAAATACTCTTAAGGGATACCTTTGACTAGAAGTACCCGACATCCTTAAAG
GACTTAAAAAGGATTACAGAAGGGATGAACCTATCCTAAATACACACTTTCAGCATAAAAGCGGA
CTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACAAAAGGCCTCCTAGGGGATACCATCAAC
ATAAAGTACCCGGAACTCTTAAAGGACTTAAAAAGAATAAAAG
Found at i:133727 original size:155 final size:151
Alignment explanation
Indices: 133029--134070 Score: 749
Period size: 155 Copynumber: 6.8 Consensus size: 151
133019 CCATCGATGT
*
133029 AAAGTACTCGATACTCTTAAAGGACTTAAAAATGACTT-AG-ATTGGATGAACCTATCCTAAATA
1 AAAGTACTCGATAC-CTTAAAGGACTTAAAAA-GA-TTAAGAATGGGATGAACCTATCCTAAATA
** * * * *
133092 CTCGTCTTTGGCATAAAAGCGGACCCGATGACAACCTAGGAC-TCGATTCTAAAGAATTACCAAA
63 C-CCACTTTAGCATAAAAGCGGACTCGATGACAACCTAGGACTTAG-TTCTAAAAAATTACCAAA
*
133156 ATACCGTTAAGGGATATCTTTGACGTA
126 ATACC-TTAAGGGATATCTTTGACATA
* * * * *
133183 AAAGTGCTCGATATCCCTAAAAGACTTACAAAAGATTACAAAATGAGATGAACCTATCCTAAATA
1 AAAGTACTCGATA-CCTTAAAGGACTTA-AAAAGATTA-AGAATGGGATGAACCTATCCTAAATA
* * * * * * *
133248 CTCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAGTTTTAGAAAATTACAAAAA
63 CCCACT-TTAGCATAAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACCAAAA
** * *
133313 TGTTCTTAGGGGATACCTTTGACAT-
127 T-ACCTTAAGGGATATCTTTGACATA
* ** *
133338 AAAGTACCCGGCACTCTTAAAGGACTTAAAAAGGA-TAA-AA--GGATGAACCTATCCTAAATGC
1 AAAGTACTCGATAC-CTTAAAGGACTTAAAAA-GATTAAGAATGGGATGAACCTATCCTAAATAC
* * * * * * **
133399 ACACCTTT-GACATAAAAGTGGACTCGGTGACGATCTAGGAGTTAGTT-TATAAAAATTATGAAA
64 CCA-CTTTAG-CATAAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTA-AAAAATTACCAAA
* * * * **
133462 ATGCCTCTAGGGGATATCATCGATGTA
126 ATACCT-TAAGGGATATCTTTGACATA
* *
133489 AAAGTATCTCGGTAACTCTAAAGGACTTAAAAAGA-T-AGAGATGGGATGAACCTATCCTAAATA
1 AAAGTA-CTCGATACCT-TAAAGGACTTAAAAAGATTAAGA-ATGGGATGAACCTATCCTAAATA
* * * *
133552 CCCGCCTTTGGCATAAAAGCGAACTCGATGACAACCTAGGAC-TCGATTCTAAAAAATTACCAAA
63 CCC-ACTTTAGCATAAAAGCGGACTCGATGACAACCTAGGACTTAG-TTCTAAAAAATTACCAAA
133616 ATACTCTTAAGGGATATCTTTGAC-TA
126 ATAC-CTTAAGGGATATCTTTGACATA
* *
133642 GAAGTGCTCGATATCCTTAAAGGACTTAAAAATGATTACAGAATGGGATGAACCTATCCTAAATA
1 AAAGTACTCGATA-CCTTAAAGGACTTAAAAA-GATTA-AGAATGGGATGAACCTATCCTAAATA
* *
133707 CCCACTTTCAGCATTAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAGAAAATTA-CAAAA
63 CCCACTTT-AGCATAAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACCAAAA
** * * * *
133771 GGGCTCCTAGGGGATACCTTTAACAT-
127 -TAC-CTTAAGGGATATCTTTGACATA
* ** * * *
133797 AAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATAA-AA--GGATGAACCTATCCTAAATGCA
1 AAAGTACTCGATAC-CTTAAAGGACTTAAAAAGATTAAGAATGGGATGAACCTATCCTAAATACC
* ** * * * * * * * ** *
133859 CACCTTTGGCATAAAAGTAGACCCGGTGACGACCTAGGAGTTGGTTTTGAAAAATTATGAAAATG
65 CA-CTTTAGCATAAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACCAAAATA
* * * ***
133924 CCTCTAGGGGATATCATCGATGCA
129 CCT-TAAGGGATATCTTTGACATA
* * * *
133948 AAAGTATCCCGGTAACTCTAAAGGACTTAAAAATATT-AGAGATGGGATGAACCTATCCTAAATA
1 AAAGTA-CTCGATACCT-TAAAGGACTTAAAAAGATTAAGA-ATGGGATGAACCTATCCTAAATA
** * * * * * *
134012 CCCACATTCGGTATAAAAG-GGAACCCGATGACGACCTAAGAGTTGGTTCTAAAAAATTA
63 CCCAC-TTTAGCATAAAAGCGG-ACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTA
134071 TGAAAATGCC
Statistics
Matches: 712, Mismatches: 128, Indels: 95
0.76 0.14 0.10
Matches are distributed among these distances:
149 6 0.01
150 153 0.21
151 31 0.04
152 70 0.10
153 17 0.02
154 128 0.18
155 211 0.30
156 93 0.13
157 3 0.00
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (151 bp):
AAAGTACTCGATACCTTAAAGGACTTAAAAAGATTAAGAATGGGATGAACCTATCCTAAATACCC
ACTTTAGCATAAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAAAAAATTACCAAAATACC
TTAAGGGATATCTTTGACATA
Found at i:133848 original size:459 final size:461
Alignment explanation
Indices: 132989--134070 Score: 1651
Period size: 459 Copynumber: 2.4 Consensus size: 461
132979 CTAAGTTCAA
* * * *
132989 GAAAAATTATGAAAATGCCCCTAAGGGATACCATCGATGT-AAAGTA-CTCGAT-ACTCTTAAAG
1 GAAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGTAAAAGTATCTCGGTAACTC-TAAAG
* * * * *
133051 GACTTAAAAATGACT-TAGATTGGATGAACCTATCCTAAATACTCGTCTTTGGCATAAAAGCGGA
65 GACTTAAAAA-GACTAGAGATGGGATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAA
*
133115 CCCGATGACAACCTAGGACTCGATTCTAAAGAATTACCAAAATACCGTTAAGGGATATCTTTGAC
129 CCCGATGACAACCTAGGACTCGATTCTAAAAAATTACCAAAATACCGTTAAGGGATATCTTTGAC
133180 GTAAAAGTGCTCGATATCCCTAAAAGACTTACAAAAGATTACAAAATGAGATGAACCTATCCTAA
194 GTAAAAGTGCTCGATATCCCTAAAAGACTTACAAAAGATTACAAAATGAGATGAACCTATCCTAA
* *
133245 ATACTCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAGTTTTAGAAAATTACAA
259 ATACCCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAGTTCTAGAAAATTACAA
* * * * *
133310 AAATGTTCTTAGGGGATACCTTTGACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGGATA
324 AAAGGCTCCTAGGGGATACCTTTAACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATA
* * *
133375 AAAGGATGAACCTATCCTAAATGCACACCTTTGACATAAAAGTGGACTCGGTGACGATCTAGGAG
389 AAAGGATGAACCTATCCTAAATGCACACCTTTGACATAAAAGTAGACCCGGTGACGACCTAGGAG
133440 TTAGTTTAT
454 TTAGTTT-T
133449 -AAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGTAAAAGTATCTCGGTAACTCTAAAGG
1 GAAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGTAAAAGTATCTCGGTAACTCTAAAGG
*
133513 ACTTAAAAAGA-TAGAGATGGGATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAACT
66 ACTTAAAAAGACTAGAGATGGGATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAACC
133577 CGATGACAACCTAGGACTCGATTCTAAAAAATTACCAAAATACTC-TTAAGGGATATCTTTGAC-
131 CGATGACAACCTAGGACTCGATTCTAAAAAATTACCAAAATAC-CGTTAAGGGATATCTTTGACG
* * * * *
133640 TAGAAGTGCTCGATATCCTTAAAGGACTTA-AAAATGATTACAGAATGGGATGAACCTATCCTAA
195 TAAAAGTGCTCGATATCCCTAAAAGACTTACAAAA-GATTACAAAATGAGATGAACCTATCCTAA
* *
133704 ATACCCACTTTCAGCATTAAAGCGGACTCGATGACAACCTAGGACTTAGTTCTAGAAAATTACAA
259 ATACCCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAGTTCTAGAAAATTACAA
*
133769 AAGGGCTCCTAGGGGATACCTTTAACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATA
324 AAAGGCTCCTAGGGGATACCTTTAACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATA
*
133834 AAAGGATGAACCTATCCTAAATGCACACCTTTGGCATAAAAGTAGACCCGGTGACGACCTAGGAG
389 AAAGGATGAACCTATCCTAAATGCACACCTTTGACATAAAAGTAGACCCGGTGACGACCTAGGAG
*
133899 TTGGTTTT
454 TTAGTTTT
* *
133907 GAAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGCAAAAGTATCCCGGTAACTCTAAAGG
1 GAAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGTAAAAGTATCTCGGTAACTCTAAAGG
* * * * * * *
133972 ACTTAAAAATATTAGAGATGGGATGAACCTATCCTAAATACCCACATTCGGTATAAAAGGGAACC
66 ACTTAAAAAGACTAGAGATGGGATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAACC
* * * * *
134037 CGATGACGACCTAAGAGTTGGTTCTAAAAAATTA
131 CGATGACAACCTAGGACTCGATTCTAAAAAATTA
134071 TGAAAATGCC
Statistics
Matches: 569, Mismatches: 45, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
458 5 0.01
459 350 0.62
460 189 0.33
461 21 0.04
462 4 0.01
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.25
Consensus pattern (461 bp):
GAAAAATTATGAAAATGCCTCTAGGGGATATCATCGATGTAAAAGTATCTCGGTAACTCTAAAGG
ACTTAAAAAGACTAGAGATGGGATGAACCTATCCTAAATACCCGCCTTTGGCATAAAAGCGAACC
CGATGACAACCTAGGACTCGATTCTAAAAAATTACCAAAATACCGTTAAGGGATATCTTTGACGT
AAAAGTGCTCGATATCCCTAAAAGACTTACAAAAGATTACAAAATGAGATGAACCTATCCTAAAT
ACCCACTCTCAGCATTAAAGCGGACCCGATGACAACCTAGGACTTAGTTCTAGAAAATTACAAAA
AGGCTCCTAGGGGATACCTTTAACATAAAGTACCCGGCACTCTTAAAGGACTTAAAAAGAATAAA
AGGATGAACCTATCCTAAATGCACACCTTTGACATAAAAGTAGACCCGGTGACGACCTAGGAGTT
AGTTTT
Found at i:135084 original size:166 final size:167
Alignment explanation
Indices: 134663--135085 Score: 468
Period size: 167 Copynumber: 2.5 Consensus size: 167
134653 ATAGAGGCAG
* *
134663 TTCAAGAGAAAAAATTCAAAATTTC-TGAACATAAATTAATTTTTCAAAATTGATTTAATATGAA
1 TTCAAGAGAAAAAATTCAAAA-CTCATGAA-ATAAATTAATTTTTCAAAATTGATTTAATATAAA
* * * *
134727 TTAAATAATAATATTTTATGAAGTTTAAAAATTAAAAACCAATAAAAATTTCCTCGAAAAAATTT
64 TTAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAATAAAAAATGCCTCGAAAAAATTT
* * *
134792 ACGAAGTAGAAAACTCAGTTTTTCGAGAAAAAAGGGCAT
129 ACGAAGAAGAAAACTCAGTATTTCGAGAAAAAAGAGCAT
* * * * * * *
134831 TGCAA-AGAAAAACTCCAAAACTTATAAAAATGAATTAATTTTTTAAAATTGATTTAATATAAAT
1 TTCAAGAGAAAAAATTCAAAACTCAT-GAAATAAATTAATTTTTCAAAATTGATTTAATATAAAT
* * *
134895 TAAATGATAAAATTTGATGAATTTTAAAAATTAAAAA-CTATAAAAAATGCTCTCGAAAAAATTT
65 TAAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAATAAAAAATGC-CTCGAAAAAATTT
* *
134959 ACGGAA-AAGAAAACTCTGTAATTT-GA-AAACAAGAAG-AT
129 AC-GAAGAAGAAAACTCAGT-ATTTCGAGAAAAAAG-AGCAT
* * * *
134997 TTCAAGA-AAAAAATTCAAAACTCATGCAAATAAATAAATTTTTGAAAACTAATTTAATAGT-AA
1 TTCAAGAGAAAAAATTCAAAACTCATG-AAATAAATTAATTTTTCAAAATTGATTTAATA-TAAA
*
135060 TTAAATAATAATATTTGGTGAATTTT
64 TTAAATAATAATATTTGATGAATTTT
135086 GATGTTTGGA
Statistics
Matches: 212, Mismatches: 34, Indels: 20
0.80 0.13 0.08
Matches are distributed among these distances:
166 90 0.42
167 110 0.52
168 12 0.06
ACGTcount: A:0.50, C:0.08, G:0.09, T:0.32
Consensus pattern (167 bp):
TTCAAGAGAAAAAATTCAAAACTCATGAAATAAATTAATTTTTCAAAATTGATTTAATATAAATT
AAATAATAATATTTGATGAATTTTAAAAATTAAAAACCAATAAAAAATGCCTCGAAAAAATTTAC
GAAGAAGAAAACTCAGTATTTCGAGAAAAAAGAGCAT
Found at i:136887 original size:15 final size:15
Alignment explanation
Indices: 136867--136897 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
136857 TTTTCACAAA
*
136867 AAGTCCACACGAGCT
1 AAGTCCACACAAGCT
136882 AAGTCCACACAAGCT
1 AAGTCCACACAAGCT
136897 A
1 A
136898 GTGGCACCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.16, T:0.13
Consensus pattern (15 bp):
AAGTCCACACAAGCT
Found at i:137351 original size:13 final size:13
Alignment explanation
Indices: 137333--137357 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
137323 CATGGCATAT
137333 TGTATCGATACAA
1 TGTATCGATACAA
137346 TGTATCGATACA
1 TGTATCGATACA
137358 TGATGAATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:138228 original size:29 final size:29
Alignment explanation
Indices: 138183--139396 Score: 528
Period size: 29 Copynumber: 41.7 Consensus size: 29
138173 ACATCCCCAA
*
138183 TGGCATC-CTTTTCAAAGTCCACAACTTTG
1 TGGCATCTCTTTT-AAAGTCCACAACTCTG
* *
138212 TGCCATCTCTTTTAAAGTCCACTACT-TCG
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
*
138241 TGGCATCTCTTTTAAAGTCCACAACT-TCA
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
* * *
138270 TGGCACCTTTTTCTTTAAAGTCCACAACTCCG
1 TGGCA--TCTCT-TTTAAAGTCCACAACTCTG
* **
138302 TGGCA-CCCTTTT-AAGTCCACAACTCCA
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
138329 TTGCATC-CTTTCAAAGTCCACAACTCTG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
*
138357 TGGCATCTCTTTTAAAGTCCACAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
138386 TGGCA-CATTTTTCTTCAAAGTCCATAACTCTG
1 TGGCATC--TCTT-TT-AAAGTCCACAACTCTG
* * * * *
138418 TGGAACCT-TTTTTAAGTCCGCAACTCTA
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * * *
138446 TTGCA-CCCTTTCAAAGTCCACAACTCTA
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
138474 TAGCATCTCTTTTAAAGTCCACAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * * *
138503 TGGCATATTTTCTTCAAAGTCCATAACTCTA
1 TGGCATCTCTT-TT-AAAGTCCACAACTCTG
* *
138534 TGGCA-CCCTTGT-AAGTCCACAACT-TCG
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
* * **
138561 TGGCA-CCCTTTCAAAGTCCACAACTCCA
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
138589 TGGCATCTCTTTTTAAGTCCATAACTCTG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * *
138618 TGGCACCTTTTTCTTAAAGTCCACAGCT-TAG
1 TGGCATC-TCTT-TTAAAGTCCACAACTCT-G
* * *
138649 TGGCATCTCTTCTCAAAGTCCATAACTCAG
1 TGGCATCTCTT-TTAAAGTCCACAACTCTG
* * **
138679 TGGCACCTTTTTTAAAGTCCATGACT-TAG
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
*
138708 TGGCATCTCTTTCAAAGTCCACAACT-TAG
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
* *
138737 TGGCATC-CTTTTCAAAGTCCACAATTCCG
1 TGGCATCTCTTTT-AAAGTCCACAACTCTG
* *
138766 TGGCATCTCTTTTGAAGTCCATAACT-TCG
1 TGGCATCTCTTTTAAAGTCCACAACTCT-G
* * * *
138795 TGGCACCTTTTTCTTCAAAGTCCATAACTCCG
1 TGGCATC-TCTT-TT-AAAGTCCACAACTCTG
* * *
138827 TGGCA-CCCTTTT-AAGTCCAAAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * * *
138854 TGGCA-CCCTTCT-AAGTCTACAACTCTA
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
138881 TGGCA-CCCTTTT-AAGTCCACAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * * * * *
138908 TGGGA-CCCTTTCAAAGTACATAACTTTG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
**
138936 TGGCAATC-CTTTT-AAGTCCACAACTCAA
1 TGGC-ATCTCTTTTAAAGTCCACAACTCTG
*
138964 TGGCACTTTTTTCTTTTAAAGTCCACAACTCTG
1 TGGCA----TCTCTTTTAAAGTCCACAACTCTG
* *
138997 TGGCA-CCCTTTTAAA-TCTGA-AACT-TCG
1 TGGCATCTCTTTTAAAGTC-CACAACTCT-G
* *
139024 TGGCACCATTTTTTTTAAAGTCCACAACT-TCG
1 TGG---CATCTCTTTTAAAGTCCACAACTCT-G
* **
139056 TGGCA-CCCTTTT-AAGTCCGA-AACTCCA
1 TGGCATCTCTTTTAAAGTCC-ACAACTCTG
* * * * **
139083 TGGCACTTTTTTCTTTTTATGTTCACAACTCCA
1 TGGCA----TCTCTTTTAAAGTCCACAACTCTG
* * * *
139116 TGGCA-CCCTTTT-AAGTCTATAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* * *
139143 TGGCACCTTTTTCTTTTAAAGTCTACAACTC-A
1 TGGCA----TCTCTTTTAAAGTCCACAACTCTG
* **
139175 T-G-ATACCCTTTTAAA-TCCACAACTCCA
1 TGGCAT-CTCTTTTAAAGTCCACAACTCTG
* * **
139202 TGGCACCTTTTTCTATTTTAGAGTCCACAACTCCA
1 TGGCA------TCTCTTTTAAAGTCCACAACTCTG
* * * *
139237 TAGCACCT-TTTTAAGGTCCACAACTCCG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
*
139265 TGGCACCT-TTTTAAAAGTCCACAACTCTG
1 TGGCATCTCTTTT-AAAGTCCACAACTCTG
* * *
139294 TGGCA--TATGTT-AAGTCCATAACTCTG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
139320 TGGCA-CCCTTTTTAAAGCCCACAACTTCT-
1 TGGCATCTC-TTTTAAAGTCCACAAC-TCTG
* * * *
139349 TGGCA-CCCTTTTAAAGCCCACAAGTCGG
1 TGGCATCTCTTTTAAAGTCCACAACTCTG
* *
139377 TGGCAACCTCTTATAAAGTC
1 TGGC-ATCTCTTTTAAAGTC
139397 TATACAGGTC
Statistics
Matches: 924, Mismatches: 174, Indels: 173
0.73 0.14 0.14
Matches are distributed among these distances:
26 31 0.03
27 167 0.18
28 183 0.20
29 259 0.28
30 71 0.08
31 56 0.06
32 86 0.09
33 47 0.05
34 7 0.01
35 17 0.02
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (29 bp):
TGGCATCTCTTTTAAAGTCCACAACTCTG
Found at i:138632 original size:232 final size:230
Alignment explanation
Indices: 138241--139332 Score: 787
Period size: 232 Copynumber: 4.7 Consensus size: 230
138231 CACTACTTCG
*
138241 TGGCATCTCTTTTAAAGTCCACAACTTC-ATGGCACCTTTTTCTTTAAAGTCCACAACTCCGTGG
1 TGGCATCTCTTTTAAAGTCCACAAC-TCAATGGCA-CTTTTTCTTCAAAGTCCACAACTCCGTGG
* * * * *
138305 CACCCTTTTAAGTCCACAACTCCATTGCATCCTTTCAAAGTCCACAACTCTGTGGCATCTCTTTT
64 CACCCTTTTAAGTCCACAACTTCGTGGCACCCTTTCAAAGTCCACAACTCCGTGGCATCTCTTTT
* * * *
138370 AAAGTCCACAACTCCGTGGCACATTTTTCTTCAAAGTCCATAACTCTGTGGAACCTTTTTTAAGT
129 TAAGTCCAAAACTCCGTGGCACCTTTTTCTTCAAAGTCCACAACTCTGTGGAACCTTTTTTAAGT
* * *
138435 CCGCAACTCTATTGCACCCTTTCAAAGTCCACAACTCTA
194 CCACAACTC-ATGGCACCCTTTCAAAGTCCATAACT-TA
* ** * **
138474 TAGCATCTCTTTTAAAGTCCACAACTCCGTGGCA-TATTTTCTTCAAAGTCCATAACTCTATGGC
1 TGGCATCTCTTTTAAAGTCCACAACTCAATGGCACT-TTTTCTTCAAAGTCCACAACTCCGTGGC
* *
138538 ACCCTTGTAAGTCCACAACTTCGTGGCACCCTTTCAAAGTCCACAACTCCATGGCATCTCTTTTT
65 ACCCTTTTAAGTCCACAACTTCGTGGCACCCTTTCAAAGTCCACAACTCCGTGGCATCTCTTTTT
* * * * * **
138603 AAGTCCATAACTCTGTGGCACCTTTTTCTT-AAAGTCCACAGCT-TAGTGGCATCTCTTCTCAAA
130 AAGTCCAAAACTCCGTGGCACCTTTTTCTTCAAAGTCCACAACTCT-GTGG-AAC-CTTTTTTAA
* * * *
138666 GTCCATAACTCAGTGGCACCTTTTTTAAAGTCCATGACTTA
192 GTCCACAACTCA-TGGCACC-CTTTCAAAGTCCATAACTTA
* * * ** *
138707 GTGGCATCTCTTTCAAAGTCCACAACTTAGTGGCA-TCCTT-TTCAAAGTCCACAATTCCGTGGC
1 -TGGCATCTCTTTTAAAGTCCACAACTCAATGGCACTTTTTCTTCAAAGTCCACAACTCCGTGGC
* * * *
138770 ATCTCTTTTGAAGTCCATAACTTCGTGGCACCTTTTTCTTCAAAGTCCATAACTCCGTGGCA-C-
65 A-CCCTTTT-AAGTCCACAACTTCGTGGCACC---CT-TTCAAAGTCCACAACTCCGTGGCATCT
* * * * * *
138833 CCTTTTAAGTCCAAAACTCCGTGGCACC-----CTTCTAAGTCTACAACTCTATGGCACC-CTTT
124 CTTTTTAAGTCCAAAACTCCGTGGCACCTTTTTCTTCAAAGTCCACAACTCTGTGGAACCTTTTT
* * * *
138892 TAAGTCCACAACTCCGTGGGACCCTTTCAAAGTACATAACTTTG
189 TAAGTCCACAACT-CATGGCACCCTTTCAAAGTCCATAAC-TTA
* *
138936 TGGCAATC-CTTTT-AAGTCCACAACTCAATGGCACTTTTTTCTTTTAAAGTCCACAACTCTGTG
1 TGGC-ATCTCTTTTAAAGTCCACAACTCAATGGCAC-TTTTTC-TTCAAAGTCCACAACTCCGTG
* * * * *
138999 GCACCCTTTTAAATCTGA-AACTTCGTGGCACCATTTTTTTTAAAGTCCACAACTTCGTGGCA-C
63 GCACCCTTTTAAGTC-CACAACTTCGTGGCACC----CTTTCAAAGTCCACAACTCCGTGGCATC
* * * * ** * * ** * *
139062 -CCTTTTAAGTCCGAAACTCCATGGCACTTTTTTCTTTTTATGTTCACAACTCCATGGCACC-CT
123 TCTTTTTAAGTCCAAAACTCCGTGGCACCTTTTTC-TTCAAAGTCCACAACTCTGTGGAACCTTT
* * * * * * *
139125 TTTAAGTCTATAACTCCGTGGCACCTTTTTCTTTTAAAGTCTACAACTCA
187 TTTAAGTCCACAACT-CATGGCACC-----CTTTCAAAGTCCATAACTTA
* * * * *
139175 T-G-ATACCCTTTTAAA-TCCACAACTCCATGGCACCTTTTTCTATTTTAGAGTCCACAACTCCA
1 TGGCAT-CTCTTTTAAAGTCCACAACTCAATGGCA-CTTTTTC---TTCAAAGTCCACAACTCCG
* * * * * *
139237 TAGCACCTTTTTAAGGTCCACAACTCCGTGGCACCTTTTTAAAAGTCCACAACTCTGTGGCA--T
61 TGGCACCCTTTTAA-GTCCACAACTTCGTGGCACC-CTTTCAAAGTCCACAACTCCGTGGCATCT
* * * *
139300 -ATGTTAAGTCCATAACTCTGTGGCACCCTTTTT
124 CTTTTTAAGTCCAAAACTCCGTGGCA-CCTTTTT
139333 AAAGCCCACA
Statistics
Matches: 696, Mismatches: 117, Indels: 87
0.77 0.13 0.10
Matches are distributed among these distances:
227 18 0.03
228 21 0.03
229 91 0.13
230 15 0.02
231 41 0.06
232 146 0.21
233 60 0.09
234 67 0.10
235 45 0.06
236 27 0.04
237 22 0.03
238 80 0.11
239 5 0.01
240 43 0.06
241 15 0.02
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (230 bp):
TGGCATCTCTTTTAAAGTCCACAACTCAATGGCACTTTTTCTTCAAAGTCCACAACTCCGTGGCA
CCCTTTTAAGTCCACAACTTCGTGGCACCCTTTCAAAGTCCACAACTCCGTGGCATCTCTTTTTA
AGTCCAAAACTCCGTGGCACCTTTTTCTTCAAAGTCCACAACTCTGTGGAACCTTTTTTAAGTCC
ACAACTCATGGCACCCTTTCAAAGTCCATAACTTA
Found at i:138973 original size:81 final size:80
Alignment explanation
Indices: 138282--139007 Score: 230
Period size: 88 Copynumber: 8.4 Consensus size: 80
138272 GCACCTTTTT
* * * * * * * *
138282 CTTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATTGCATCCTTTCAAAGTC
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGTACAAAACTCCGTGGCA-CCCTTCTAAGTC
**
138347 CACAACTCTGTGGCATC
65 CACAACTCAATGGCA-C
* * * * * * *
138364 TCTTTTAAAGTCCACAACTCCGTGGCACATTTTTCTTCAAAGTCCATAACTCTGTGGAACCTTTT
1 -CTTTT-AAGTCCACAACTCCGTGGCAC-----CCTTTAAAGTACAAAACTCCGTGGCACC-CTT
* * * *
138429 TTAAGTCCGCAACTCTATTGCACC
58 CTAAGTCCACAACTCAATGGCA-C
* ** * * * * **
138453 CTTTCAAAGTCCACAACTCTATAGCATCTCTTTTAAAGTCCACAACTCCGTGGCATATTTTCTTC
1 CTTT-TAAGTCCACAACTCCGTGGCA-C-CCTTTAAAGTACAAAACTCCGTGGC--A--CCCTTC
* * *
138518 AAAGTCCATAACTCTATGGCACC
59 TAAGTCCACAACTCAATGGCA-C
* * * * * * *
138541 CTTGTAAGTCCACAACTTCGTGGCACCCTTTCAAAGTCCACAACTCCATGGCATCTCTTTTTAAG
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTT-AAAGTACAAAACTCCGTGGCA-C-CCTTCTAAG
* **
138606 TCCATAACTCTGTGGCAC
63 TCCACAACTCAATGGCAC
* ** * * * * *
138624 CTTTTTCTTAAAGTCCACAGCTTAGTGGCATCTCTTCTCAAAGTCCATAACTCAGTGGCACCTTT
1 C---TT-TT-AAGTCCACAACTCCGTGGCA-CCCTT-T-AAAGTACAAAACTCCGTGGCACC-CT
* ** * *
138689 TTTAAAGTCCATGACTTAGTGGCATC
57 TCT-AAGTCCACAACTCAATGGCA-C
* ** * * * * * *
138715 TCTTTCAAAGTCCACAACTTAGTGGCATCCTTTTCAAAGTCCACAATTCCGTGGCATCTCTTTTG
1 -CTTT-TAAGTCCACAACTCCGTGGCA-CCCTTT-AAAGTACAAAACTCCGTGGCA-CCCTTCT-
* *
138780 AAGTCCATAACTTC-GTGGCAC
60 AAGTCCACAAC-TCAATGGCAC
* * *
138801 CTTTTTCTTCAAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCAAAACTCCGTGGCACCCTTCT
1 C---TT-TT--AAGTCCACAACTCCGTGGCACCCTTTAAAGTACAAAACTCCGTGGCACCCTTCT
* *
138866 AAGTCTACAACTCTATGGCACC
60 AAGTCCACAACTCAATGGCA-C
* * ** * *
138888 CTTTTAAGTCCACAACTCCGTGGGACCCTTTCAAAGTACATAACTTTGTGGCAATCCTTTTAAGT
1 CTTTTAAGTCCACAACTCCGTGGCACCCTTT-AAAGTACAAAACTCCGTGGC-ACCCTTCTAAGT
138953 CCACAACTCAATGGCAC
64 CCACAACTCAATGGCAC
*
138970 TTTTTTCTTTTAAAGTCCACAACTCTGTGGCACCCTTT
1 ------CTTTT-AAGTCCACAACTCCGTGGCACCCTTT
139008 TAAATCTGAA
Statistics
Matches: 502, Mismatches: 95, Indels: 86
0.73 0.14 0.13
Matches are distributed among these distances:
81 24 0.05
82 16 0.03
83 33 0.07
84 45 0.09
85 27 0.05
86 37 0.07
87 65 0.13
88 117 0.23
89 82 0.16
90 54 0.11
91 1 0.00
92 1 0.00
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.32
Consensus pattern (80 bp):
CTTTTAAGTCCACAACTCCGTGGCACCCTTTAAAGTACAAAACTCCGTGGCACCCTTCTAAGTCC
ACAACTCAATGGCAC
Found at i:139040 original size:31 final size:32
Alignment explanation
Indices: 138945--139067 Score: 93
Period size: 32 Copynumber: 4.0 Consensus size: 32
138935 GTGGCAATCC
* **
138945 TTTT-AAGTCCACAAC-TCAATGGCACTTTTTT
1 TTTTAAAGTCCACAACTTC-GTGGCACCATTTT
*
138976 CTTTTAAAGTCCACAAC-TCTGTGGCACC----C
1 -TTTTAAAGTCCACAACTTC-GTGGCACCATTTT
*
139005 TTTTAAA-TCTGA-AACTTCGTGGCACCATTTT
1 TTTTAAAGTC-CACAACTTCGTGGCACCATTTT
*
139036 TTTTAAAGTCCACAACTTCGTGGCACCCTTTT
1 TTTTAAAGTCCACAACTTCGTGGCACCATTTT
139068 AAGTCCGAAA
Statistics
Matches: 74, Mismatches: 8, Indels: 18
0.74 0.08 0.18
Matches are distributed among these distances:
27 13 0.18
28 10 0.14
31 8 0.11
32 24 0.32
33 19 0.26
ACGTcount: A:0.24, C:0.26, G:0.12, T:0.37
Consensus pattern (32 bp):
TTTTAAAGTCCACAACTTCGTGGCACCATTTT
Found at i:139122 original size:60 final size:60
Alignment explanation
Indices: 138219--139276 Score: 618
Period size: 60 Copynumber: 18.0 Consensus size: 60
138209 TTGTGCCATC
* * * * *
138219 TCTTTTAAAGTCCACTACTTCGTGGCATCTCTTTTAAAGTCCACAACTTCATGGCACCTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACCTTTT
* *
138281 TC-TTTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATTGCATCC--TT
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCA-CCTTTT
** * * *
138339 TC----AAAGTCCACAACTCTGTGGCATCTCTTTTAAAGTCCACAACTCCGTGGCACATTTT
1 TCTTTTAAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACCTTTT
* * ** * * * * *
138397 TC-TTCAAAGTCCATAACTCTGTGGAACCTTTTTTAAGTCCGCAACTCTATTGCACC----
1 TCTTTTAAAGTCCACAACTCCATGGCACC-CTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * * *
138453 -CTTTCAAAGTCCACAACTCTATAGCATCTCTTTTAAAGTCCACAACTCCGTGGCA--TATTT
1 TCTTTTAAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACCT-TTT
* * * * * *
138513 TC-TTCAAAGTCCATAACTCTATGGCACCCTTGTAAGTCCACAACTTCGTGGCACC----
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * **
138568 -CTTTCAAAGTCCACAACTCCATGGCATCTCTTTTTAAGTCCATAACTCTGTGGCACCTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCA-C-CCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * * *
138629 TC--TTAAAGTCCACAGCT-TAGTGGCATCTCTTCTCAAAGTCCATAACT-CAGTGGCACC---T
1 TCTTTTAAAGTCCACAACTCCA-TGGCA-CCCTT-T-TAAGTCCACAACTCCA-TGGCACCTTTT
** * * * *
138687 T-TTTTAAAGTCCATGACT-TAGTGGCATCTCTTTCAAAGTCCACAACT-TAGTGGCATCC-TTT
1 TCTTTTAAAGTCCACAACTCCA-TGGCA-CCCTTT-TAAGTCCACAACTCCA-TGGCA-CCTTTT
* * * * * *
138748 TC----AAAGTCCACAATTCCGTGGCATCTCTTTTGAAGTCCATAACTTCGTGGCACCTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACCTTTT
* * * * *
138806 TC-TTCAAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCAAAACTCCGTGGCACC----
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * * *
138861 -CTTCT-AAGTCTACAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGGACC----
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * *** * * *
138915 -CTTTCAAAGTACATAACTTTGTGGCAATCCTTTTAAGTCCACAACTCAATGGCACTTTTT
1 TCTTTTAAAGTCCACAACTCCATGGC-ACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
** * * * * *
138975 TCTTTTAAAGTCCACAACTCTGTGGCACCCTTTTAAATCTGA-AACTTCGTGGCACCATTT
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTC-CACAACTCCATGGCACCTTTT
* * *
139035 T-TTTTAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCGA-AACTCCATGGCACTTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCC-ACAACTCCATGGCACCTTTT
* * * * * *
139094 TCTTTTTATGTTCACAACTCCATGGCACCCTTTTAAGTCTATAACTCCGTGGCACCTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* ** *
139154 TCTTTTAAAGTCTACAACT-CATGATACCCTTTTAAATCCACAACTCCATGGCACCTTTT
1 TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
* * * *
139213 TCTATTTTAGAGTCCACAACTCCATAGCACCTTTTTAAGGTCCACAACTCCGTGGCACCTTTT
1 TC--TTTTAAAGTCCACAACTCCATGGCACCCTTTTAA-GTCCACAACTCCATGGCACCTTTT
139276 T
1 T
139277 AAAAGTCCAC
Statistics
Matches: 801, Mismatches: 134, Indels: 121
0.76 0.13 0.11
Matches are distributed among these distances:
54 48 0.06
55 58 0.07
56 57 0.07
57 60 0.07
58 93 0.12
59 161 0.20
60 163 0.20
61 123 0.15
62 15 0.02
63 23 0.03
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.34
Consensus pattern (60 bp):
TCTTTTAAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCATGGCACCTTTT
Found at i:139145 original size:119 final size:118
Alignment explanation
Indices: 138221--139298 Score: 676
Period size: 116 Copynumber: 9.2 Consensus size: 118
138211 GTGCCATCTC
* * * *
138221 TTTT-AAAGTCCACTACTTCGTGGCATCTCTTTTAAAGTCCACAACTTCATGGCACCTTTTTC-T
1 TTTTCAAAGTCCACAACTTCGTGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACTTTTTTCTT
* * * *
138284 TTAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCCATTGCATCC---
64 TTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCA-CCTTT
* * *
138337 -TTTCAAAGTCCACAAC-TCTGTGGCATCTCTTTTAAAGTCCACAACTCCGTGGCACATTTTTC-
1 TTTTCAAAGTCCACAACTTC-GTGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACTTTTTTCT
** * ** * * * ** *
138399 TTCAAAGTCCATAACTCTGTGGAACCTTTTTTAAGTCCGCAACTCTATTGCACC---
63 TTTTAAGTCCACAACTCCATGGCACC-CTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * * *
138453 CTTTCAAAGTCCACAAC-TCTATAGCATCTCTTTTAAAGTCCACAACTCCGTGGCA-TATTTTC-
1 TTTTCAAAGTCCACAACTTC-GTGGCA-CCCTTTT-AAGTCCACAACTCCATGGCACTTTTTTCT
** * * * *
138515 TTCAAAGTCCATAACTCTATGGCACCCTTGTAAGTCCACAACTTCGTGGCACC---
63 TTTTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * * ** *
138568 CTTTCAAAGTCCACAACTCCATGGCATCTCTTTTTAAGTCCATAACTCTGTGGCACCTTTTTC--
1 TTTTCAAAGTCCACAACTTCGTGGCA-C-CCTTTTAAGTCCACAACTCCATGGCACTTTTTTCTT
* * * * * * *
138631 TTAAAGTCCACAGCT-TAGTGGCATCTCTTCTCAAAGTCCATAACTCAGTGGCACC-TT
64 TTTAAGTCCACAACTCCA-TGGCA-CCCTT-T-TAAGTCCACAACTCCGTGGCACCTTT
** * * * * *
138688 TTTT-AAAGTCCATGACTTAGTGGCATCTCTTTCAAAGTCCACAACT-TAGTGGCA-----TCCT
1 TTTTCAAAGTCCACAACTTCGTGGCA-CCCTTT-TAAGTCCACAACTCCA-TGGCACTTTTTTCT
* * * * * *
138746 TTTCAAAGTCCACAATTCCGTGGCATCTCTTTTGAAGTCCATAACTTCGTGGCACCTTT
63 TTT-TAAGTCCACAACTCCATGGCA-CCCTTTT-AAGTCCACAACTCCGTGGCACCTTT
* * * * *
138805 TTCTTCAAAGTCCATAACTCCGTGGCACCCTTTTAAGTCCAAAACTCCGTGGCAC------CCTT
1 TT-TTCAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACTTTTTTCTTT
* * * *
138864 CTAAGTCTACAACTCTATGGCACCCTTTTAAGTCCACAACTCCGTGGGACC---
65 TTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTT
* * * * * *
138915 CTTTCAAAGTACATAACTTTGTGGCAATCCTTTTAAGTCCACAACTCAATGGCACTTTTTTCTTT
1 TTTTCAAAGTCCACAACTTCGTGGC-ACCCTTTTAAGTCCACAACTCCATGGCACTTTTTTCTTT
* ** * * *
138980 TAAAGTCCACAACTCTGTGGCACCCTTTTAAATCTGA-AACTTCGTGGCACCATTT
65 TTAAGTCCACAACTCCATGGCACCCTTTTAAGTC-CACAACTCCGTGGCACC-TTT
*
139035 TTTTTAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCGA-AACTCCATGGCACTTTTTTCTTT
1 TTTTCAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCC-ACAACTCCATGGCACTTTTTTCTTT
* * * *
139099 TTATGTTCACAACTCCATGGCACCCTTTTAAGTCTATAACTCCGTGGCACCTTTT
65 TTAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACC-TTT
* * * ** * *
139154 TCTTTTAAAGTCTACAAC-TCATGATACCCTTTTAAATCCACAACTCCATGGCACCTTTTTCTAT
1 T-TTTCAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACTTTTTTCT-T
* *
139218 TTTAGAGTCCACAACTCCATAGCACCTTTTTAAGGTCCACAACTCCGTGGCACC--T
64 TTTA-AGTCCACAACTCCATGGCACCCTTTTAA-GTCCACAACTCCGTGGCACCTTT
*
139273 TTTTAAAAGTCCACAAC-TCTGTGGCA
1 TTTTCAAAGTCCACAACTTC-GTGGCA
139299 TATGTTAAGT
Statistics
Matches: 788, Mismatches: 129, Indels: 87
0.78 0.13 0.09
Matches are distributed among these distances:
109 20 0.03
110 26 0.03
113 19 0.02
114 10 0.01
115 100 0.13
116 188 0.24
117 117 0.15
118 48 0.06
119 174 0.22
120 44 0.06
121 24 0.03
122 18 0.02
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (118 bp):
TTTTCAAAGTCCACAACTTCGTGGCACCCTTTTAAGTCCACAACTCCATGGCACTTTTTTCTTTT
TAAGTCCACAACTCCATGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTTT
Found at i:139210 original size:26 final size:27
Alignment explanation
Indices: 139155--139371 Score: 73
Period size: 28 Copynumber: 7.6 Consensus size: 27
139145 GCACCTTTTT
* *
139155 CTTTTAAAGTCTACAACTCATGATACC
1 CTTTTAAAGTCCACAACTCATGACACC
*
139182 CTTTTAAA-TCCACAACTCCATGGCACC
1 CTTTTAAAGTCCACAACT-CATGACACC
*
139209 TTTTTCTATTTTAGAGTCCACAACTCCAT-AGCACC
1 -----C--TTTTAAAGTCCACAACT-CATGA-CACC
* * * *
139244 TTTTTAAGGTCCACAACTCCGTGGCACC
1 CTTTTAAAGTCCACAACT-CATGACACC
* * * *
139272 TTTTTAAAAGTCCACAACTCTGTGGCA-T
1 CTTTT-AAAGTCCACAACTC-ATGACACC
* * * * *
139300 ATGTT-AAGTCCATAACTCTGTGGCACC
1 CTTTTAAAGTCCACAACTC-ATGACACC
* * *
139327 CTTTTTAAAGCCCACAACTTCTTGGCACC
1 C-TTTTAAAGTCCACAAC-TCATGACACC
*
139356 CTTTTAAAGCCCACAA
1 CTTTTAAAGTCCACAA
139372 GTCGGTGGCA
Statistics
Matches: 152, Mismatches: 21, Indels: 33
0.74 0.10 0.16
Matches are distributed among these distances:
26 27 0.18
27 15 0.10
28 49 0.32
29 35 0.23
30 2 0.01
32 1 0.01
34 6 0.04
35 17 0.11
ACGTcount: A:0.28, C:0.29, G:0.12, T:0.31
Consensus pattern (27 bp):
CTTTTAAAGTCCACAACTCATGACACC
Found at i:139257 original size:28 final size:29
Alignment explanation
Indices: 139223--139291 Score: 104
Period size: 28 Copynumber: 2.4 Consensus size: 29
139213 TCTATTTTAG
139223 AGTCCACAACTCCATAGCACCTTTTT-AA
1 AGTCCACAACTCCATAGCACCTTTTTAAA
* * *
139251 GGTCCACAACTCCGTGGCACCTTTTTAAA
1 AGTCCACAACTCCATAGCACCTTTTTAAA
139280 AGTCCACAACTC
1 AGTCCACAACTC
139292 TGTGGCATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
28 23 0.64
29 13 0.36
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.26
Consensus pattern (29 bp):
AGTCCACAACTCCATAGCACCTTTTTAAA
Found at i:139323 original size:55 final size:56
Alignment explanation
Indices: 139247--139353 Score: 148
Period size: 55 Copynumber: 1.9 Consensus size: 56
139237 TAGCACCTTT
*
139247 TTAAGGTCCACAACTCCGTGGCA-CCTTTTTAAAAGTCCACAAC-TCTGTGGCATATG
1 TTAAGGTCCACAACTCCGTGGCACCCTTTTT-AAAGCCCACAACTTCT-TGGCATATG
* *
139303 TTAA-GTCCATAACTCTGTGGCACCCTTTTTAAAGCCCACAACTTCTTGGCA
1 TTAAGGTCCACAACTCCGTGGCACCCTTTTTAAAGCCCACAACTTCTTGGCA
139354 CCCTTTTAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
55 32 0.70
56 14 0.30
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (56 bp):
TTAAGGTCCACAACTCCGTGGCACCCTTTTTAAAGCCCACAACTTCTTGGCATATG
Found at i:139462 original size:31 final size:31
Alignment explanation
Indices: 139349--139703 Score: 332
Period size: 31 Copynumber: 11.5 Consensus size: 31
139339 CACAACTTCT
*
139349 TGGC-ACCCTTTTAAAG-CC-CACAAGTCGG
1 TGGCAACCCTTCTAAAGCCCACACAAGTCGG
* * * * * *
139377 TGGCAACCTCTTATAAAGTCTATACAGGTCAG
1 TGGCAACC-CTTCTAAAGCCCACACAAGTCGG
* * *
139409 TGGCAACACTTTCTGAAGCCCACACAAGTTGG
1 TGGCAAC-CCTTCTAAAGCCCACACAAGTCGG
* *
139441 TGGCAA-CTTTCCTAAAGCCCACATAAGTCGG
1 TGGCAACCCTT-CTAAAGCCCACACAAGTCGG
*
139472 TGGCAACCCTTTTAAAGCCCACACAAGTCGG
1 TGGCAACCCTTCTAAAGCCCACACAAGTCGG
* * *
139503 TGGTAACCC-T-T--A-CCCATACATGTCGG
1 TGGCAACCCTTCTAAAGCCCACACAAGTCGG
*
139529 TGGCAACCCTTCTCTAAAGCCCACACAAGTCAG
1 TGGCAACCC-T-TCTAAAGCCCACACAAGTCGG
*
139562 TGGCAAACCCTTCTAAAGCCCACACAAGTCGA
1 TGGC-AACCCTTCTAAAGCCCACACAAGTCGG
* *
139594 TGGCAACCCTTCTAAAGTCCACACAAGTCGA
1 TGGCAACCCTTCTAAAGCCCACACAAGTCGG
* * *
139625 TGGCACCCCTTCTGAAGCCCACACAAGTCGA
1 TGGCAACCCTTCTAAAGCCCACACAAGTCGG
* * *
139656 TGGTAACCCTATCAAAAGCCTACACAAGTCGG
1 TGGCAACCCT-TCTAAAGCCCACACAAGTCGG
*
139688 TGGCATCTCCTTCTAA
1 TGGCAAC-CCTTCTAA
139704 GCTTATGGTC
Statistics
Matches: 268, Mismatches: 42, Indels: 30
0.79 0.12 0.09
Matches are distributed among these distances:
26 20 0.07
27 1 0.00
28 4 0.01
29 5 0.02
30 14 0.05
31 112 0.42
32 87 0.32
33 20 0.07
34 5 0.02
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.21
Consensus pattern (31 bp):
TGGCAACCCTTCTAAAGCCCACACAAGTCGG
Found at i:139527 original size:26 final size:26
Alignment explanation
Indices: 139458--139539 Score: 83
Period size: 26 Copynumber: 3.0 Consensus size: 26
139448 TTTCCTAAAG
*
139458 CCCACATAAGTCGGTGGCAACCCTTTTAAA
1 CCCACACAAGTCGGTGGCAACCC--TT--A
*
139488 GCCCACACAAGTCGGTGGTAACCCTTA
1 -CCCACACAAGTCGGTGGCAACCCTTA
* *
139515 CCCATACATGTCGGTGGCAACCCTT
1 CCCACACAAGTCGGTGGCAACCCTT
139540 CTCTAAAGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
26 22 0.48
27 1 0.02
29 2 0.04
31 21 0.46
ACGTcount: A:0.26, C:0.33, G:0.20, T:0.22
Consensus pattern (26 bp):
CCCACACAAGTCGGTGGCAACCCTTA
Found at i:139598 original size:122 final size:120
Alignment explanation
Indices: 139398--139623 Score: 319
Period size: 122 Copynumber: 1.9 Consensus size: 120
139388 TATAAAGTCT
* ** *
139398 ATACAGGTCAGTGGCAACACTTTCTGAAGCCCACACAAGTTGGTGGCAACTTTCCTAAAGCCCAC
1 ATACAGGTCAGTGGCAACACTTTCTAAAGCCCACACAAGTCAGTGGCAACCTTCCTAAAGCCCAC
* * *
139463 ATAAGTCGGTGGCAACCCTTTTAAAGCCCACACAAGTCGGTGGTAACCCTTACCC
66 ACAAGTCGATGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGTAACCCTTACCC
* * *
139518 ATACATGTCGGTGGCAACCCTTCTCTAAAGCCCACACAAGTCAGTGGCAAACCCTT-CTAAAGCC
1 ATACAGGTCAGTGGCAACACTT-TCTAAAGCCCACACAAGTCAGTGGC-AA-CCTTCCTAAAGCC
*
139582 CACACAAGTCGATGGCAACCCTTCTAAAGTCCACACAAGTCG
63 CACACAAGTCGATGGCAACCCTTCTAAAGCCCACACAAGTCG
139624 ATGGCACCCC
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
120 19 0.21
121 22 0.24
122 48 0.52
123 3 0.03
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.20
Consensus pattern (120 bp):
ATACAGGTCAGTGGCAACACTTTCTAAAGCCCACACAAGTCAGTGGCAACCTTCCTAAAGCCCAC
ACAAGTCGATGGCAACCCTTCTAAAGCCCACACAAGTCGGTGGTAACCCTTACCC
Found at i:140038 original size:155 final size:155
Alignment explanation
Indices: 139768--140059 Score: 379
Period size: 155 Copynumber: 1.9 Consensus size: 155
139758 TTTGAGTCCA
* *
139768 ATGTTGCTAGCCTTAAATTAGCACATTAGCACTCTTCTCGTTTCTAAATCCAATGTCATTGGCCT
1 ATGTTGCTAGCCTTAAATCAGCACATTAGCACTCTTCTCATTTCTAAATCCAATGTCATTGGCCT
* * * *
139833 TGAATCAGCATATAGGCACCTTTGCCATCTTTAAGTCCGATATCGCTGGCCTTAAATTAGCATAT
66 TGAATCACCATATAGGCACCTTTGCCATCTTTAAGTCCAACATCGCTGGCCTTAAATTAGCAAAT
*
139898 TTGCACTTTCACATTTTTAAGCTTG
131 TGGCACTTTCACATTTTTAAGCTTG
* * * * * * *
139923 ATGTTGCTAGCCTTAAATCAGCACATTGGCATTCTTTTTATTTTTAAGTCCAATGTCATTGGCTT
1 ATGTTGCTAGCCTTAAATCAGCACATTAGCACTCTTCTCATTTCTAAATCCAATGTCATTGGCCT
* * * * * * *
139988 TGAATCACCATATTGGCA-TTTTTCTTATCTTTAAGTCTAACGTCGCTGGCCTTGAATTAGCAAA
66 TGAATCACCATATAGGCACCTTTGC-CATCTTTAAGTCCAACATCGCTGGCCTTAAATTAGCAAA
140052 TTGGCACT
130 TTGGCACT
140060 CTTCTCATAT
Statistics
Matches: 115, Mismatches: 21, Indels: 2
0.83 0.15 0.01
Matches are distributed among these distances:
154 4 0.03
155 111 0.97
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (155 bp):
ATGTTGCTAGCCTTAAATCAGCACATTAGCACTCTTCTCATTTCTAAATCCAATGTCATTGGCCT
TGAATCACCATATAGGCACCTTTGCCATCTTTAAGTCCAACATCGCTGGCCTTAAATTAGCAAAT
TGGCACTTTCACATTTTTAAGCTTG
Found at i:140043 original size:52 final size:52
Alignment explanation
Indices: 139932--140062 Score: 129
Period size: 52 Copynumber: 2.5 Consensus size: 52
139922 GATGTTGCTA
* * * * *
139932 GCCTTAAATCAGCACATTGGCATTCTTTTTATTTTTAAGTCCAATGTCATTG
1 GCCTTGAATCACCACATTGGCATTCTTTTTATCTTTAAGTCCAACGTCACTG
* * * *
139984 GCTTTGAATCACCATATTGGCATT-TTTCTTATCTTTAAGTCTAACGTCGCTG
1 GCCTTGAATCACCACATTGGCATTCTTT-TTATCTTTAAGTCCAACGTCACTG
* * * *
140036 GCCTTGAATTAGCAAATTGGCACTCTT
1 GCCTTGAATCACCACATTGGCATTCTT
140063 CTCATATTTA
Statistics
Matches: 63, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
51 3 0.05
52 58 0.92
53 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (52 bp):
GCCTTGAATCACCACATTGGCATTCTTTTTATCTTTAAGTCCAACGTCACTG
Found at i:140708 original size:20 final size:20
Alignment explanation
Indices: 140666--140719 Score: 74
Period size: 20 Copynumber: 2.6 Consensus size: 20
140656 TTCAACAATT
*
140666 TGTATCGATACGTTAAGGCAA
1 TGTATCGATAC-ATAAGGCAA
140687 TGTATCGATACATAAGTG-AA
1 TGTATCGATACATAAG-GCAA
140707 TGTATCGATACAT
1 TGTATCGATACAT
140720 GACCATGTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 19 0.61
21 12 0.39
ACGTcount: A:0.35, C:0.13, G:0.20, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGGCAA
Found at i:140771 original size:20 final size:20
Alignment explanation
Indices: 140746--140877 Score: 88
Period size: 20 Copynumber: 6.5 Consensus size: 20
140736 GGAAAGAAAT
*
140746 TGTATCGATACATTTTTCAA
1 TGTATCGATACATTTTTAAA
***
140766 TGTATCGATACA-TAAAAAA
1 TGTATCGATACATTTTTAAA
*
140785 TTGTATCGATACATTTTTTAA
1 -TGTATCGATACATTTTTAAA
***
140806 TGTATCGATACA-TAAGAAA
1 TGTATCGATACATTTTTAAA
* * * *
140825 TTGTATTGATACATTTCTCAT
1 -TGTATCGATACATTTTTAAA
* *
140846 TGTATTGATACATTTTGGGAAA
1 TGTATCGATACATTTT--TAAA
140868 TGTATCGATA
1 TGTATCGATA
140878 TGTTTTACAA
Statistics
Matches: 83, Mismatches: 23, Indels: 10
0.72 0.20 0.09
Matches are distributed among these distances:
19 6 0.07
20 62 0.75
21 5 0.06
22 10 0.12
ACGTcount: A:0.35, C:0.11, G:0.14, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTTTTAAA
Found at i:140794 original size:40 final size:40
Alignment explanation
Indices: 140742--140858 Score: 180
Period size: 40 Copynumber: 2.9 Consensus size: 40
140732 TTTTGGAAAG
140742 AAATTGTATCGATACATTTTTCAATGTATCGATACATAAA
1 AAATTGTATCGATACATTTTTCAATGTATCGATACATAAA
* *
140782 AAATTGTATCGATACATTTTTTAATGTATCGATACATAAG
1 AAATTGTATCGATACATTTTTCAATGTATCGATACATAAA
* * * *
140822 AAATTGTATTGATACATTTCTCATTGTATTGATACAT
1 AAATTGTATCGATACATTTTTCAATGTATCGATACAT
140859 TTTGGGAAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 70 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.41
Consensus pattern (40 bp):
AAATTGTATCGATACATTTTTCAATGTATCGATACATAAA
Found at i:144292 original size:20 final size:21
Alignment explanation
Indices: 144267--144308 Score: 77
Period size: 20 Copynumber: 2.0 Consensus size: 21
144257 AAATCAATAT
144267 ATTCACTTATT-TATCGATAC
1 ATTCACTTATTGTATCGATAC
144287 ATTCACTTATTGTATCGATAC
1 ATTCACTTATTGTATCGATAC
144308 A
1 A
144309 AATTATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.43
Consensus pattern (21 bp):
ATTCACTTATTGTATCGATAC
Found at i:146343 original size:16 final size:18
Alignment explanation
Indices: 146297--146347 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
146287 GAAATTAAAA
*
146297 TCAAAAGTCAACGATAAG
1 TCAAAAGTCAACTATAAG
*
146315 TGAAAAGTCAACTATAAG
1 TCAAAAGTCAACTATAAG
146333 -CAAAA-TCAACTATAA
1 TCAAAAGTCAACTATAA
146348 AAAGGTAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
16 10 0.33
17 4 0.13
18 16 0.53
ACGTcount: A:0.53, C:0.16, G:0.12, T:0.20
Consensus pattern (18 bp):
TCAAAAGTCAACTATAAG
Found at i:148574 original size:59 final size:58
Alignment explanation
Indices: 148459--148622 Score: 204
Period size: 59 Copynumber: 2.8 Consensus size: 58
148449 GGTCTTCTGT
* * *
148459 ATAACCAACTAGAGTGGACTTAACAGAAACTAAACTACCAACTCTACTAGCTTTCCAC
1 ATAACCGACTAGAGTAGACTTAACAGAAAATAAACTACCAACTCTACTAGCTTTCCAC
* * * *
148517 ATAACCGACTAGAGTAGACTTAATAAGAAAATAAATTGCCAACTCTACTAG-TCTTCCAT
1 ATAACCGACTAGAGTAGACTTAA-CAGAAAATAAACTACCAACTCTACTAGCT-TTCCAC
* * *
148576 ATAACCGGCTAGAGCAAACTTAACAGAAAACTAAACTACCAACTCTA
1 ATAACCGACTAGAGTAGACTTAACAGAAAA-TAAACTACCAACTCTA
148623 TCGGTCTCTC
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
58 28 0.31
59 62 0.69
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.23
Consensus pattern (58 bp):
ATAACCGACTAGAGTAGACTTAACAGAAAATAAACTACCAACTCTACTAGCTTTCCAC
Found at i:148639 original size:59 final size:59
Alignment explanation
Indices: 148476--148668 Score: 182
Period size: 59 Copynumber: 3.3 Consensus size: 59
148466 ACTAGAGTGG
* * * * * *
148476 ACTTAACAG-AAACTAAACTACCAACTCTACTAGCTTTC-CACATAACCGACTAGAGTAG
1 ACTTAACAGAAAACTAAACTACCAACTCTA-TCGGTCTCTCACATAACCGGCTAGAGCAA
* * * * *
148534 ACTTAATAAGAAAA-TAAATTGCCAACTCTA-CTAGTCT-TCCATATAACCGGCTAGAGCAA
1 ACTTAA-CAGAAAACTAAACTACCAACTCTATC-GGTCTCT-CACATAACCGGCTAGAGCAA
* *
148593 ACTTAACAGAAAACTAAACTACCAACTCTATCGGTCTCTCACATAACCAGCTAAAGCAA
1 ACTTAACAGAAAACTAAACTACCAACTCTATCGGTCTCTCACATAACCGGCTAGAGCAA
*
148652 ACTTATCA-AAAACTAAA
1 ACTTAACAGAAAACTAAA
148669 TCGCTAACTA
Statistics
Matches: 108, Mismatches: 19, Indels: 16
0.76 0.13 0.11
Matches are distributed among these distances:
58 23 0.21
59 80 0.74
60 5 0.05
ACGTcount: A:0.42, C:0.25, G:0.09, T:0.23
Consensus pattern (59 bp):
ACTTAACAGAAAACTAAACTACCAACTCTATCGGTCTCTCACATAACCGGCTAGAGCAA
Found at i:151985 original size:52 final size:52
Alignment explanation
Indices: 151900--152024 Score: 223
Period size: 52 Copynumber: 2.4 Consensus size: 52
151890 ATATGAAAAG
* *
151900 TTGCTTGCATGTATCGATACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
*
151952 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
152004 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
152025 AAGACGTGTA
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 70 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAAT
Found at i:156039 original size:166 final size:162
Alignment explanation
Indices: 155787--156108 Score: 434
Period size: 166 Copynumber: 2.0 Consensus size: 162
155777 AAAAGGAAAA
*
155787 TTTCAAGGAAAAAATTCAAAAACTCATGAAAATAATTTTTGAAAAATAATTTAATATGAATTAAA
1 TTTCAAGGAAAAAATTCAAAAACTCATGAAAATAATTTTTGAAAAATAACTTAATATGAATTAAA
* * * *
155852 TCATGATATTTTATGAATTTTAAAAATTAAAAACCAATGAAAATCC-TCCCAAAAGAATTTACAA
66 TAATAATATTTGATAAATTTTAAAAATTAAAAACCAATGAAAATCCTTCCCAAAA-AATTTACAA
*
155916 AGAAGAAAATTTCATATTTCGAAAAAATAGGAG
130 AGAAGAAAACTTCATATTTCGAAAAAATAGGAG
* *
155949 TTTCAAGG-AAAAATTCAAAAA-TCCATGAAAATGAATGAATTTTTGAAAACTAACTTGATATGA
1 TTTCAAGGAAAAAATTCAAAAACT-CATG--AA--AAT-AATTTTTGAAAAATAACTTAATATGA
* * *
156012 ATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAATGAGAATCCTTTCGAAAAAATT
60 ATTAAATAATAATATTTGATAAATTTTAAAAATTAAAAACCAATGAAAATCCTTCCCAAAAAATT
** *
156077 TACGGAGAAGAAAACTTCGTATTTCGAAAAAA
125 TACAAAGAAGAAAACTTCATATTTCGAAAAAA
156109 AAGAAAAATT
Statistics
Matches: 139, Mismatches: 14, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
160 1 0.01
161 17 0.12
162 8 0.06
163 2 0.01
165 3 0.02
166 102 0.73
167 6 0.04
ACGTcount: A:0.50, C:0.09, G:0.10, T:0.30
Consensus pattern (162 bp):
TTTCAAGGAAAAAATTCAAAAACTCATGAAAATAATTTTTGAAAAATAACTTAATATGAATTAAA
TAATAATATTTGATAAATTTTAAAAATTAAAAACCAATGAAAATCCTTCCCAAAAAATTTACAAA
GAAGAAAACTTCATATTTCGAAAAAATAGGAG
Found at i:157272 original size:60 final size:60
Alignment explanation
Indices: 157205--157978 Score: 244
Period size: 60 Copynumber: 12.8 Consensus size: 60
157195 CAAGCGAGGT
* * **
157205 AAGATTTGATCAAATATAGTCAAATGAAGAAAGACTTGACCGAATGTAG-TCAAGCAGGGC
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAA-CAGGGC
* * * * *
157265 AATATTTGATCGAGTATAATCAAATGAAGAAAGACTTGACTGAATACAGTTGAACAGGGT
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAACAGGGC
* * * * * *
157325 AAGATTTGATCGAGTATAGTCAAAT-AAGGATAGTCTTGACCAAATAAAGTTGAACAGGGT
1 AAGATTTGATCGAGTATAGTCAAATGAA-GAAAGACTTGACCGAATACAGTTCAACAGGGC
** * * ** * ** * *
157385 AAGATTTGATTAAGTATAGT-AAATG-AGGATGGTTTCGACCGAATATAGTAAAAAAGGATC
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTT-GACCGAATACAGTTCAACAGG-GC
* * * * ** *
157445 -AGATTTAATCGAGTACAGTCAAATGATGAAAGACTTCATTGAATACAG-TCAAGCAAGGGTG
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAA-C-AGGG-C
* * * * * * * * * *
157506 AA-ATTTGTTCGAAT-TCAGTCAAACGAGGAAGGTCTTGATCGAATATAG-TCAAGAGGGGT
1 AAGATTTGATCGAGTAT-AGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAACA-GGGC
* * * * * * *
157565 GAGATTTGA-CTGAGTACAGTCAAAT-ATGGAAAGACTTGACTGAATACAGTTAAGTGACCGTG-
1 AAGATTTGATC-GAGTATAGTCAAATGA-AGAAAGACTTGACCGAATACAGTTCA---ACAGGGC
* * * * * * * * * *
157627 AA-ATTTGATTGAATACAGTTAAATGAGGAAGGTCTTGACCGAATATAG-TCAAGAGGGGT
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAACA-GGGC
* * ** * * * * *
157686 AAGATTTGATTGAGTACAGTCAAATGTGGAAATACTTGACTGAATATAGTT-AAGTGAGGGTG
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAA--CAGGG-C
* * * * * * * * * *
157748 AA-ATTTGACCAAATACAATCAAAT-AACGATAGTA-TTGACCGAACACA-ATCAAAAGGGGT
1 AAGATTTGATCGAGTATAGTCAAATGAA-GAAAG-ACTTGACCGAATACAGTTCAACA-GGGC
* * * ** * *
157807 AAGATTTGATTGAGTACAGTCAAATGAGGAAAGACTTGATTGAATACCGTT-AAGCGAGGGTG
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAA-C-AGGG-C
* * * * * * * ** *
157869 AA-ATTTGATCGAATACAATTAAATG-AGAAAGGTCTTGATCGCATACAGTT-AAGTGGGGT
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAA-GACTTGACCGAATACAGTTCAA-CAGGGC
* * * * *
157928 AAGATTTAACCGAGTACAATCAAATGAGGAAAGACTTGACCGAATACAGTT
1 AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTT
157979 GAGAGGGATG
Statistics
Matches: 526, Mismatches: 144, Indels: 88
0.69 0.19 0.12
Matches are distributed among these distances:
57 1 0.00
58 6 0.01
59 52 0.10
60 284 0.54
61 169 0.32
62 11 0.02
63 2 0.00
64 1 0.00
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (60 bp):
AAGATTTGATCGAGTATAGTCAAATGAAGAAAGACTTGACCGAATACAGTTCAACAGGGC
Found at i:157558 original size:61 final size:58
Alignment explanation
Indices: 157485--157917 Score: 173
Period size: 61 Copynumber: 7.2 Consensus size: 58
157475 AGACTTCATT
*
157485 GAATACAGTCAAGCAAGGGTGAAATTTGTTCGAATTCAGTCAAACGAGGAAGGTCTTGATC
1 GAATACAGTCAAG-AAGGGTGAAATTTGTTCGAATACAGTCAAA-GAGGAAGGTCTTGA-C
* * * * * * * *
157546 GAATATAGTCAAGAGGGGTGAGATTTG-ACTGAGTACAGTCAAATATGGAAAGACTTGAC
1 GAATACAGTCAAGAAGGGTGAAATTTGTTC-GAATACAGTCAAAGA-GGAAGGTCTTGAC
* * ** *
157605 TGAATACAGTTAAGTGACCGTGAAATTTGATT-GAATACAGTTAAATGAGGAAGGTCTTGACC
1 -GAATACAGTCAAG-AAGGGTGAAATTTG-TTCGAATACAGTCAAA-GAGGAAGGTCTTGA-C
* * * * *
157667 GAATATAGTCAAGAGGGGT-AAGATTTGATT-GAGTACAGTCAAATGTGGAA-ATACTTGAC
1 GAATACAGTCAAGAAGGGTGAA-ATTTG-TTCGAATACAGTCAAA-GAGGAAGGT-CTTGAC
* * * ** * * * * *
157726 TGAATATAGTTAAGTGAGGGTGAAATTTGACCAAATACAATCAAATAACGATA-GTATTGACC
1 -GAATACAGTCAAG-AAGGGTGAAATTTGTTCGAATACAGTCAAA-GAGGA-AGGTCTTGA-C
* * * * * *
157788 GAACACAATCAA-AAGGG-GTAAGATTTGATT-GAGTACAGTCAAATGAGGAAAGACTTGATT
1 GAATACAGTCAAGAAGGGTG-AA-ATTTG-TTCGAATACAGTCAAA-GAGGAAGGTCTTGA-C
* * * * * * *
157848 GAATACCGTTAAGCGAGGGTGAAATTTGATCGAATACAATTAAATGAGAAAGGTCTTGATC
1 GAATACAGTCAAG-AAGGGTGAAATTTGTTCGAATACAGTCAAA-GAGGAAGGTCTTGA-C
*
157909 GCATACAGT
1 GAATACAGT
157918 TAAGTGGGGT
Statistics
Matches: 272, Mismatches: 76, Indels: 48
0.69 0.19 0.12
Matches are distributed among these distances:
58 1 0.00
59 14 0.05
60 121 0.44
61 122 0.45
62 13 0.05
63 1 0.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.26
Consensus pattern (58 bp):
GAATACAGTCAAGAAGGGTGAAATTTGTTCGAATACAGTCAAAGAGGAAGGTCTTGAC
Found at i:157628 original size:121 final size:122
Alignment explanation
Indices: 157175--157978 Score: 633
Period size: 121 Copynumber: 6.7 Consensus size: 122
157165 CAGATAAGGA
* * * * * * * *
157175 AAGG-CTTGATCGAATACAATCAAGCGAGGTAAGATTTGA-TCAAATATAGTCAAATGA-AGAAA
1 AAGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACT-GAGTACAGTCAAATGATGGAAA
* ** * * * * *
157237 GACTTGACCGAATGTAGTCAAGC-AGGG-CAATATTTGATCGAGTATAATCAAATGAAG
65 GACTTGACTGAATACAGTTAAGCGAGGGTGAA-ATTTGATCGAATACAATCAAATGAGG
* * * * * * * *
157294 AAAGACTTGACTGAATACAGTTGAACA-GGGTAAGATTTGA-TCGAGTATAGTCAAAT-AAGGAT
1 AAGGTCTTGACCGAATACAG-TCAAGAGGGGTAAGATTTGACT-GAGTACAGTCAAATGATGGAA
* ** * * * *
157356 AGTCTTGACCAAATAAAGTTGAA-C-AGGGT-AAGATTTGAT-TAAGTATAGT-AAATGAGG
64 AGACTTGACTGAATACAGTT-AAGCGAGGGTGAA-ATTTGATCGAA-TACAATCAAATGAGG
* * * * * * * *
157413 ATGGT-TTCGACCGAATATAGTAAAAAAGGATCAGATTT-AATCGAGTACAGTCAAATGAT-GAA
1 AAGGTCTT-GACCGAATACAGTCAAGAGGGGTAAGATTTGACT-GAGTACAGTCAAATGATGGAA
* * * * * * * *
157475 AGACTTCATTGAATACAGTCAAGCAAGGGTGAAATTTGTTCGAATTCAGTCAAACGAGG
64 AGACTTGACTGAATACAGTTAAGCGAGGGTGAAATTTGATCGAATACAATCAAATGAGG
* * *
157534 AAGGTCTTGATCGAATATAGTCAAGAGGGGTGAGATTTGACTGAGTACAGTCAAAT-ATGGAAAG
1 AAGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGATGGAAAG
* ** * * *
157598 ACTTGACTGAATACAGTTAAGTGACCGTGAAATTTGATTGAATACAGTTAAATGAGG
66 ACTTGACTGAATACAGTTAAGCGAGGGTGAAATTTGATCGAATACAATCAAATGAGG
* * *
157655 AAGGTCTTGACCGAATATAGTCAAGAGGGGTAAGATTTGATTGAGTACAGTCAAATG-TGGAAAT
1 AAGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGATGGAAAG
* * * * * *
157719 ACTTGACTGAATATAGTTAAGTGAGGGTGAAATTTGACCAAATACAATCAAATAACG
66 ACTTGACTGAATACAGTTAAGCGAGGGTGAAATTTGATCGAATACAATCAAATGAGG
* * * * *
157776 ATA-GTATTGACCGAACACAATCAAAAGGGGTAAGATTTGATTGAGTACAGTCAAATGA-GGAAA
1 A-AGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGATGGAAA
* * * *
157839 GACTTGATTGAATACCGTTAAGCGAGGGTGAAATTTGATCGAATACAATTAAATGAGA
65 GACTTGACTGAATACAGTTAAGCGAGGGTGAAATTTGATCGAATACAATCAAATGAGG
* * * * * * *
157897 AAGGTCTTGATCGCATACAGTTAAGTGGGGTAAGATTTAACCGAGTACAATCAAATGA-GGAAAG
1 AAGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGATGGAAAG
*
157961 ACTTGACCGAATACAGTT
66 ACTTGACTGAATACAGTT
157979 GAGAGGGATG
Statistics
Matches: 552, Mismatches: 111, Indels: 42
0.78 0.16 0.06
Matches are distributed among these distances:
118 9 0.02
119 64 0.12
120 93 0.17
121 381 0.69
122 5 0.01
ACGTcount: A:0.39, C:0.11, G:0.24, T:0.26
Consensus pattern (122 bp):
AAGGTCTTGACCGAATACAGTCAAGAGGGGTAAGATTTGACTGAGTACAGTCAAATGATGGAAAG
ACTTGACTGAATACAGTTAAGCGAGGGTGAAATTTGATCGAATACAATCAAATGAGG
Done.