genome.fa.s467.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold467
Parameters: 2 7 7 80 10 50 1000
Length:  175679

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760--1793	18	2.0	16	88	11	50	82	0	17	0	0.67
2641--2681	21	2.0	21	90	0	64	39	26	4	29	1.77
4067--4112	20	2.3	20	81	7	58	36	4	8	50	1.53
15747--15777	2	15.5	2	93	0	53	51	3	0	45	1.17
23190--23240	20	2.5	20	96	0	93	50	9	7	31	1.64
29426--30014	167	3.6	165	85	5	778	29	8	7	53	1.60
29426--30132	167	4.3	166	82	6	763	29	9	7	52	1.62
30618--30657	20	2.0	19	85	9	53	80	2	15	2	0.93
36679--36882	80	2.6	80	78	6	191	43	11	12	32	1.79
37611--37701	38	2.4	39	82	8	118	20	0	20	58	1.40
41900--41978	33	2.4	33	87	2	106	34	12	17	35	1.88
41933--41958	13	2.0	13	100	0	52	38	15	15	30	1.88
42059--42083	13	1.9	13	100	0	50	36	16	16	32	1.90
42619--42663	22	2.0	22	91	8	74	35	28	0	35	1.58
44351--44391	22	2.0	21	86	13	59	41	4	21	31	1.74
44523--44560	13	2.9	13	96	0	67	34	18	15	31	1.92
50694--50719	13	2.0	13	100	0	52	30	15	15	38	1.88
50819--50843	13	1.9	13	100	0	50	36	16	16	32	1.90
53285--53456	58	3.0	56	76	9	186	27	8	13	50	1.71
55772--55814	16	2.7	16	77	0	50	20	9	16	53	1.70
55820--55863	15	2.8	16	82	3	54	13	15	25	45	1.83
56048--56087	18	2.2	18	86	8	55	50	2	5	42	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56225--56267	11	4.2	10	83	16	61	60	0	0	39	0.97
56226--56266	20	2.0	20	90	9	64	58	0	0	41	0.98
56419--56458	16	2.4	17	84	16	57	37	2	0	60	1.11
56729--56758	16	1.9	15	93	6	51	30	16	0	53	1.44
68560--69041	108	4.5	108	79	5	483	27	18	19	34	1.95
68574--69041	216	2.2	216	85	3	627	28	18	19	33	1.95
69739--69795	14	4.1	14	78	14	57	0	24	1	73	0.92
69753--69808	18	3.1	18	82	10	62	0	32	0	67	0.91
71125--71302	97	1.8	97	83	4	234	31	12	25	29	1.93
71806--71833	10	2.8	10	100	0	56	53	10	17	17	1.72
73373--73402	14	2.1	14	93	0	51	13	23	10	53	1.69
73586--73634	25	2.0	25	87	0	71	18	0	4	77	0.92
73597--73635	18	2.2	18	86	9	53	17	0	0	82	0.68
74566--74785	62	3.6	60	78	6	192	41	13	19	25	1.88
74851--74946	32	3.0	32	83	6	115	23	19	29	27	1.99
74927--75131	61	3.4	60	78	7	202	27	18	26	27	1.98
75145--77923	28	97.5	28	78	7	2075	24	16	28	30	1.96
75145--77926	170	16.3	169	78	7	2072	24	16	28	30	1.96
77479--77672	97	2.0	96	82	8	234	25	14	28	31	1.95
77395--77748	184	1.9	181	79	5	390	25	14	27	32	1.94
81739--81802	26	2.5	26	94	0	110	18	10	21	48	1.79
82308--82452	69	2.1	69	88	0	218	39	11	17	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82368--82579	97	2.2	97	83	4	259	31	11	25	30	1.92
94223--94256	18	2.0	17	88	11	52	76	2	17	2	1.04
99988--100573	108	5.4	107	75	5	432	30	16	17	34	1.93
100121--100572	217	2.1	214	83	2	555	31	17	17	34	1.93
101211--101279	20	3.5	21	79	16	69	0	31	0	68	0.90
101231--101258	14	2.0	14	100	0	56	0	28	0	71	0.86
101423--101455	10	3.3	10	91	0	57	30	0	3	66	1.06
101845--101881	17	2.2	17	95	4	67	0	16	2	81	0.81
101840--101882	17	2.4	18	85	14	63	0	18	2	79	0.85
104003--104040	15	2.3	16	86	13	51	10	15	2	71	1.25
105860--105897	19	2.1	19	95	5	69	23	21	0	55	1.44
111782--111823	9	4.6	9	85	14	50	7	4	0	88	0.64
111781--111822	18	2.3	18	87	4	57	7	4	0	88	0.64
111781--111823	13	3.2	13	87	6	59	6	4	0	88	0.63
111792--111836	21	2.3	19	84	7	54	17	0	0	82	0.68
114426--114473	24	1.9	26	83	8	64	58	10	4	27	1.49
114656--114707	23	2.3	23	90	6	79	46	0	9	44	1.36
116428--116649	122	1.8	120	84	4	302	50	2	10	36	1.52
117847--117898	3	17.7	3	80	4	61	61	3	1	32	1.25
118582--118669	31	2.8	30	74	17	81	52	0	0	47	1.00
118614--118652	19	2.0	20	85	5	53	43	0	0	56	0.99
121545--121730	92	2.0	92	94	0	327	30	19	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122049--122163	20	5.7	20	71	22	73	55	0	0	42	1.11
124386--124450	33	2.0	32	96	3	121	52	10	3	33	1.52
124947--124981	2	17.5	2	100	0	70	51	0	0	48	1.00
125172--125197	2	13.0	2	100	0	52	50	0	0	50	1.00
126259--126311	14	3.9	14	70	25	51	35	0	0	64	0.94
126248--126311	21	3.1	22	82	14	75	37	1	0	60	1.06
126259--126311	19	2.7	19	79	20	65	35	0	0	64	0.94
130961--131001	16	2.6	16	82	17	50	36	4	0	58	1.20
131224--131266	18	2.4	18	88	0	59	39	2	0	58	1.11
141748--141777	10	3.0	10	100	0	60	20	0	40	40	1.52
144500--144524	2	12.5	2	100	0	50	48	0	0	52	1.00
146330--146379	21	2.4	22	80	10	59	44	2	2	52	1.24
146368--146429	30	2.1	30	93	0	106	41	0	1	56	1.09
148376--148454	33	2.4	33	82	4	88	27	25	26	20	1.99
156189--156214	10	2.6	10	100	0	52	19	30	0	50	1.48
158236--158307	36	2.0	36	97	0	135	27	12	16	43	1.84
160826--160866	15	2.7	15	92	0	64	21	2	9	65	1.34
160955--161012	8	7.4	8	76	18	50	32	0	1	65	1.03
164389--164431	22	1.9	23	85	4	61	44	9	13	32	1.76
164636--164683	2	23.5	2	95	4	87	47	0	2	50	1.12
165366--165427	32	1.9	33	90	3	99	37	16	9	37	1.81
168280--168307	14	2.0	14	100	0	56	28	7	14	50	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172820--172871	24	2.2	24	100	0	104	48	7	0	44	1.31
175032--175090	2	29.5	2	100	0	118	0	50	0	49	1.00

Tables:   1

The End!