Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold468
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1127621
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 7
Found at i:3286 original size:37 final size:36
Alignment explanation
Indices: 3245--3331 Score: 131
Period size: 37 Copynumber: 2.4 Consensus size: 36
3235 GTGTTTTTTT
3245 AAAGTGCGATAGCCTCCAAAGAAAAACTTGTTTAATA
1 AAAGTGCGATAGCCTCCAAAGAAAAACTTGTTTAA-A
* *
3282 AAAGTGTGATAGCCTCCAAAGAAAAACTTGTTTCAA
1 AAAGTGCGATAGCCTCCAAAGAAAAACTTGTTTAAA
*
3318 AAAGTGGGA-AGCCT
1 AAAGTGCGATAGCCT
3332 GATTGGGACC
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
35 5 0.11
36 9 0.19
37 33 0.70
ACGTcount: A:0.41, C:0.16, G:0.20, T:0.23
Consensus pattern (36 bp):
AAAGTGCGATAGCCTCCAAAGAAAAACTTGTTTAAA
Found at i:6512 original size:16 final size:16
Alignment explanation
Indices: 6491--6521 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6481 GAAGATTTCT
6491 AAAATAAAAAATAAAG
1 AAAATAAAAAATAAAG
*
6507 AAAATAAGAAATAAA
1 AAAATAAAAAATAAA
6522 CAAAGGAAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (16 bp):
AAAATAAAAAATAAAG
Found at i:18521 original size:86 final size:86
Alignment explanation
Indices: 18376--18549 Score: 312
Period size: 86 Copynumber: 2.0 Consensus size: 86
18366 AAAAATATTT
*
18376 ATTTTAAGTGGGAGTTGATCGTCAAAGCAAATTGCTCACCCAACTTTTTCATGTAGTTATTACAA
1 ATTTTAAGTGGGAGTTGATCGTCAAAGCAAATTCCTCACCCAACTTTTTCATGTAGTTATTACAA
*
18441 AATAGTTGAGAAATAAAAGTC
66 AATAGTTGAAAAATAAAAGTC
* *
18462 ATTTTAAGTGGGGGTTGATCGTCAGAGCAAATTCCTCACCCAACTTTTTCATGTAGTTATTACAA
1 ATTTTAAGTGGGAGTTGATCGTCAAAGCAAATTCCTCACCCAACTTTTTCATGTAGTTATTACAA
18527 AATAGTTGAAAAATAAAAGTC
66 AATAGTTGAAAAATAAAAGTC
18548 AT
1 AT
18550 CGTTGATCTT
Statistics
Matches: 84, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
86 84 1.00
ACGTcount: A:0.36, C:0.14, G:0.17, T:0.33
Consensus pattern (86 bp):
ATTTTAAGTGGGAGTTGATCGTCAAAGCAAATTCCTCACCCAACTTTTTCATGTAGTTATTACAA
AATAGTTGAAAAATAAAAGTC
Found at i:19434 original size:20 final size:19
Alignment explanation
Indices: 19409--19456 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 19
19399 TATGGCATAA
19409 ATATAAATGACACATAA-AAT
1 ATATAAATGA-A-ATAACAAT
*
19429 ATATAACATGAATTAACAAT
1 ATATAA-ATGAAATAACAAT
19449 ATATAAAT
1 ATATAAAT
19457 AACAAAATGA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.20
20 16 0.64
21 4 0.16
ACGTcount: A:0.58, C:0.08, G:0.04, T:0.29
Consensus pattern (19 bp):
ATATAAATGAAATAACAAT
Found at i:22373 original size:13 final size:13
Alignment explanation
Indices: 22333--22399 Score: 64
Period size: 13 Copynumber: 5.9 Consensus size: 13
22323 CCGTTACAAG
22333 CAATGTATCGATA
1 CAATGTATCGATA
22346 CAA--T-TC-AT-
1 CAATGTATCGATA
22354 C-ATGTATCGATA
1 CAATGTATCGATA
22366 CAATGTATCGATA
1 CAATGTATCGATA
22379 C-AT-TAT-G-TA
1 CAATGTATCGATA
22388 CAATGTATCGAT
1 CAATGTATCGAT
22400 GCAAACAGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 20
0.69 0.00 0.31
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 6 0.14
10 7 0.16
11 9 0.20
12 4 0.09
13 16 0.36
ACGTcount: A:0.36, C:0.16, G:0.13, T:0.34
Consensus pattern (13 bp):
CAATGTATCGATA
Found at i:22479 original size:19 final size:19
Alignment explanation
Indices: 22432--22487 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 19
22422 CTGCCAATCT
*
22432 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAC
* *
22452 CATGAATCGATACAATGAG
1 CATGTATCGATACAATGAC
22471 CATGTATCGATACAATG
1 CATGTATCGATACAATG
22488 TATCAATACA
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
19 18 0.56
20 14 0.44
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:23068 original size:21 final size:22
Alignment explanation
Indices: 23042--23092 Score: 86
Period size: 21 Copynumber: 2.4 Consensus size: 22
23032 AGTTTTCATT
23042 TTTCTCCCTCTTAATCAAA-AA
1 TTTCTCCCTCTTAATCAAAGAA
*
23063 TTTCTCCCTCTTAATCAAAGCA
1 TTTCTCCCTCTTAATCAAAGAA
23085 TTTCTCCC
1 TTTCTCCC
23093 CCTTTGTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
21 19 0.68
22 9 0.32
ACGTcount: A:0.25, C:0.33, G:0.02, T:0.39
Consensus pattern (22 bp):
TTTCTCCCTCTTAATCAAAGAA
Found at i:25169 original size:18 final size:20
Alignment explanation
Indices: 25128--25169 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
25118 CTATAGACCC
25128 TAATTCATATCAAACAAGCA
1 TAATTCATATCAAACAAGCA
*
25148 TAATTCAT-TCACACAA-CA
1 TAATTCATATCAAACAAGCA
25166 TAAT
1 TAAT
25170 AAACATCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 6 0.29
19 7 0.33
20 8 0.38
ACGTcount: A:0.48, C:0.21, G:0.02, T:0.29
Consensus pattern (20 bp):
TAATTCATATCAAACAAGCA
Found at i:25206 original size:29 final size:30
Alignment explanation
Indices: 25149--25212 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 30
25139 AAACAAGCAT
*
25149 AATTCATTCACACAACATAATAAACATCAA
1 AATTCATTCACACAACATAACAAACATCAA
*
25179 AATTCATTCA-ACAACAAAGCACAAATCATCAA
1 AATTCATTCACACAACATA--ACAAA-CATCAA
25211 AA
1 AA
25213 ATCACAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 7 0.24
30 10 0.34
31 4 0.14
32 8 0.28
ACGTcount: A:0.55, C:0.23, G:0.02, T:0.20
Consensus pattern (30 bp):
AATTCATTCACACAACATAACAAACATCAA
Found at i:28719 original size:19 final size:19
Alignment explanation
Indices: 28672--28727 Score: 67
Period size: 19 Copynumber: 2.9 Consensus size: 19
28662 CTGCCAATCT
*
28672 CATGTATCGATACAATTGTC
1 CATGTATCGATACAA-TGAC
* * *
28692 CATGAATCGATATAATGAG
1 CATGTATCGATACAATGAC
28711 CATGTATCGATACAATG
1 CATGTATCGATACAATG
28728 TATCAATACA
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 17 0.57
20 13 0.43
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (19 bp):
CATGTATCGATACAATGAC
Found at i:31474 original size:20 final size:20
Alignment explanation
Indices: 31445--31482 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31435 TACCACTATT
*
31445 TGTATTGATACATGGTATAA
1 TGTATCGATACATGGTATAA
*
31465 TGTATCGATACATTGTAT
1 TGTATCGATACATGGTAT
31483 CGAAACATGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.08, G:0.18, T:0.42
Consensus pattern (20 bp):
TGTATCGATACATGGTATAA
Found at i:39074 original size:13 final size:13
Alignment explanation
Indices: 39056--39081 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
39046 ACATTTCTTC
39056 ATGTATCGATACA
1 ATGTATCGATACA
39069 ATGTATCGATACA
1 ATGTATCGATACA
39082 TTTTACCATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:39074 original size:33 final size:33
Alignment explanation
Indices: 39036--39102 Score: 109
Period size: 33 Copynumber: 2.0 Consensus size: 33
39026 GTTACAAGCT
*
39036 ATGTATCGATACATTTCT-TCATGTATCGATACA
1 ATGTATCGATACATTT-TACCATGTATCGATACA
39069 ATGTATCGATACATTTTACCATGTATCGATACA
1 ATGTATCGATACATTTTACCATGTATCGATACA
39102 A
1 A
39103 ATAGTGATAG
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 1 0.03
33 31 0.97
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (33 bp):
ATGTATCGATACATTTTACCATGTATCGATACA
Found at i:39724 original size:19 final size:19
Alignment explanation
Indices: 39702--39760 Score: 52
Period size: 19 Copynumber: 3.2 Consensus size: 19
39692 AAAAAAATAT
39702 TCTCCCCCTTAAACGATTA
1 TCTCCCCCTTAAACGATTA
* **
39721 TCT-CCTCTTAAAAAAAATTA
1 TCTCCCCCTT--AAACGATTA
39741 --TCCCCCTTAAACGATTA
1 TCTCCCCCTTAAACGATTA
39758 TCT
1 TCT
39761 TCTCCCCGTT
Statistics
Matches: 29, Mismatches: 6, Indels: 10
0.64 0.13 0.22
Matches are distributed among these distances:
17 7 0.24
18 6 0.21
19 9 0.31
20 7 0.24
ACGTcount: A:0.32, C:0.31, G:0.03, T:0.34
Consensus pattern (19 bp):
TCTCCCCCTTAAACGATTA
Found at i:39759 original size:17 final size:17
Alignment explanation
Indices: 39704--39759 Score: 58
Period size: 17 Copynumber: 3.1 Consensus size: 17
39694 AAAAATATTC
39704 TCCCCCTTAAACGATTA
1 TCCCCCTTAAACGATTA
* **
39721 TCTCCTCTTAAAAAAAATTA
1 TC-CCCCTT--AAACGATTA
39741 TCCCCCTTAAACGATTA
1 TCCCCCTTAAACGATTA
39758 TC
1 TC
39760 TTCTCCCCGT
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
17 11 0.37
18 5 0.17
19 5 0.17
20 9 0.30
ACGTcount: A:0.34, C:0.30, G:0.04, T:0.32
Consensus pattern (17 bp):
TCCCCCTTAAACGATTA
Found at i:41641 original size:13 final size:13
Alignment explanation
Indices: 41623--41650 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
41613 AATTGTACCT
41623 AATGTATCGATAC
1 AATGTATCGATAC
41636 AATGTATCGATAC
1 AATGTATCGATAC
41649 AA
1 AA
41651 GGAATGTTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (13 bp):
AATGTATCGATAC
Found at i:47766 original size:13 final size:13
Alignment explanation
Indices: 47748--47778 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
47738 ACATTTCTTC
47748 ATGTATCGATACA
1 ATGTATCGATACA
47761 ATGTATCGATACA
1 ATGTATCGATACA
*
47774 TTGTA
1 ATGTA
47779 CCATGAATCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:47789 original size:33 final size:32
Alignment explanation
Indices: 47728--47794 Score: 91
Period size: 33 Copynumber: 2.0 Consensus size: 32
47718 GTTACAAGCT
*
47728 ATGTATCGATACATTTCTTCATGTATCGATACA
1 ATGTATCGATACATTTC-TCATGAATCGATACA
47761 ATGTATCGATACATTGTAC-CATGAATCGATACA
1 ATGTATCGATACATT-T-CTCATGAATCGATACA
47794 A
1 A
47795 ATAGTGATAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
33 29 0.94
34 1 0.03
35 1 0.03
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.34
Consensus pattern (32 bp):
ATGTATCGATACATTTCTCATGAATCGATACA
Found at i:47883 original size:13 final size:13
Alignment explanation
Indices: 47865--47889 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47855 ACATTAAACA
47865 TGTATCGATACAT
1 TGTATCGATACAT
47878 TGTATCGATACA
1 TGTATCGATACA
47890 AAGCAGCATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:49417 original size:22 final size:22
Alignment explanation
Indices: 49392--49433 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
49382 TTTTTTAAGA
49392 TTTGACAAAGGGGGAGAAATGC
1 TTTGACAAAGGGGGAGAAATGC
*
49414 TTTGATAAAGGGGGAGAAAT
1 TTTGACAAAGGGGGAGAAAT
49434 ATGTTTATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.36, T:0.21
Consensus pattern (22 bp):
TTTGACAAAGGGGGAGAAATGC
Found at i:50045 original size:13 final size:13
Alignment explanation
Indices: 50027--50066 Score: 80
Period size: 13 Copynumber: 3.1 Consensus size: 13
50017 TCATTATGCT
50027 TTGTATCAATACA
1 TTGTATCAATACA
50040 TTGTATCAATACA
1 TTGTATCAATACA
50053 TTGTATCAATACA
1 TTGTATCAATACA
50066 T
1 T
50067 GTTCATTGTA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.40
Consensus pattern (13 bp):
TTGTATCAATACA
Found at i:50096 original size:20 final size:19
Alignment explanation
Indices: 50050--50106 Score: 78
Period size: 19 Copynumber: 2.9 Consensus size: 19
50040 TTGTATCAAT
* *
50050 ACATTGTATCAATACATGT
1 ACATTGTATCGATACATGG
*
50069 TCATTGTATCGATACATGG
1 ACATTGTATCGATACATGG
50088 ACAATTGTATCGATACATG
1 AC-ATTGTATCGATACATG
50107 AAATTGGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
19 17 0.52
20 16 0.48
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
ACATTGTATCGATACATGG
Found at i:50177 original size:33 final size:33
Alignment explanation
Indices: 50135--50212 Score: 138
Period size: 33 Copynumber: 2.4 Consensus size: 33
50125 CTACCACTGT
50135 TTGTGTCGATACGTGGTACGATGTATCAATACA
1 TTGTGTCGATACGTGGTACGATGTATCAATACA
*
50168 TTGTGTCGATACGTGGTACGATGTATCGATACA
1 TTGTGTCGATACGTGGTACGATGTATCAATACA
*
50201 TTGTATCGATAC
1 TTGTGTCGATAC
50213 ATGATGAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 43 1.00
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.35
Consensus pattern (33 bp):
TTGTGTCGATACGTGGTACGATGTATCAATACA
Found at i:50207 original size:13 final size:13
Alignment explanation
Indices: 50189--50214 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50179 CGTGGTACGA
50189 TGTATCGATACAT
1 TGTATCGATACAT
50202 TGTATCGATACAT
1 TGTATCGATACAT
50215 GATGAATTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:58378 original size:13 final size:13
Alignment explanation
Indices: 58360--58384 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
58350 CATTATGCTT
58360 TGTATCGATACAA
1 TGTATCGATACAA
58373 TGTATCGATACA
1 TGTATCGATACA
58385 TGCTCATTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:58381 original size:33 final size:32
Alignment explanation
Indices: 58339--58403 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 32
58329 ACACACCTAG
* *
58339 ATGTATCGATACATTATGCTTTGTATCGATACA
1 ATGTATCGATACATGAT-CATTGTATCGATACA
*
58372 ATGTATCGATACATGCTCATTGTATCGATACA
1 ATGTATCGATACATGATCATTGTATCGATACA
58404 TACTCAATTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 14 0.48
33 15 0.52
ACGTcount: A:0.31, C:0.17, G:0.15, T:0.37
Consensus pattern (32 bp):
ATGTATCGATACATGATCATTGTATCGATACA
Found at i:58397 original size:19 final size:20
Alignment explanation
Indices: 58373--58422 Score: 75
Period size: 19 Copynumber: 2.5 Consensus size: 20
58363 ATCGATACAA
*
58373 TGTATCGATACATGCTC-AT
1 TGTATCGATACATACTCAAT
58392 TGTATCGATACATACTCAAT
1 TGTATCGATACATACTCAAT
*
58412 TGTATTGATAC
1 TGTATCGATAC
58423 TTGAAACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.38
Consensus pattern (20 bp):
TGTATCGATACATACTCAAT
Found at i:58479 original size:20 final size:20
Alignment explanation
Indices: 58454--58526 Score: 128
Period size: 20 Copynumber: 3.6 Consensus size: 20
58444 CTAAGTGAAA
**
58454 TGTATCGATACATGAAACAT
1 TGTATCGATACATGAAGGAT
58474 TGTATCGATACATGAAGGAT
1 TGTATCGATACATGAAGGAT
58494 TGTATCGATACATGAAGGAT
1 TGTATCGATACATGAAGGAT
58514 TGTATCGATACAT
1 TGTATCGATACAT
58527 TATGCCCAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (20 bp):
TGTATCGATACATGAAGGAT
Found at i:61181 original size:13 final size:13
Alignment explanation
Indices: 61163--61187 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61153 CATAAAATGT
61163 TGTATCGATACAA
1 TGTATCGATACAA
61176 TGTATCGATACA
1 TGTATCGATACA
61188 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:61185 original size:33 final size:33
Alignment explanation
Indices: 61143--61212 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
61133 TTCAACGATT
61143 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
61176 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
61209 TGTA
1 TGTA
61213 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:61270 original size:13 final size:13
Alignment explanation
Indices: 61252--61276 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
61242 ATTACTCACA
61252 TGTATCGATACAT
1 TGTATCGATACAT
61265 TGTATCGATACA
1 TGTATCGATACA
61277 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:61341 original size:52 final size:52
Alignment explanation
Indices: 61285--61405 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
61275 CACTGATCTT
*
61285 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
61337 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
61389 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
61406 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:69675 original size:30 final size:31
Alignment explanation
Indices: 69576--69759 Score: 196
Period size: 31 Copynumber: 5.9 Consensus size: 31
69566 ATACCTTTTT
*
69576 AAAGTCCACGACTCAGTGGCAATCTCTTC-TC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTTC
*
69607 AAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCATCTTTT-CTTC
69639 AAAGTCCACGACTCAGTGGCAT-TTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTTC
*
69669 AAAGTCCACGACTCAGTGGCATTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
* * * *
69700 AAAGCCCACAACTTC-GTGGCACCTTTTCCTTT
1 AAAGTCCACGAC-TCAGTGGCATCTTTT-CTTC
* * *
69732 AAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGTCCACGACTCAGTGGCA-TCTTTT
69760 TCCCTTTTCA
Statistics
Matches: 135, Mismatches: 9, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
30 31 0.23
31 52 0.39
32 47 0.35
33 5 0.04
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.30
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTTC
Found at i:69735 original size:93 final size:93
Alignment explanation
Indices: 69576--69752 Score: 250
Period size: 93 Copynumber: 1.9 Consensus size: 93
69566 ATACCTTTTT
* * *
69576 AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTAA
1 AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACAACTCAGTGGCACCTTTTCCTTTAA
* *
69641 AGTCCACGACTCAGTGGCATTTTGTCTC
66 AGCCCACAACTCAGTGGCATTTTGTCTC
* *
69669 AAAGTCCACGACTCAGTGGC-ATTTTTTCTTCAAAGCCCACAACTTC-GTGGCACCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCAATCTCTTC-TCAAAGCCCACAAC-TCAGTGGCACCTTTTCCTTT
*
69732 AAAGCCCACAACTCCGTGGCA
64 AAAGCCCACAACTCAGTGGCA
69753 CTCTTTTTCC
Statistics
Matches: 74, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
92 6 0.08
93 66 0.89
94 2 0.03
ACGTcount: A:0.24, C:0.31, G:0.16, T:0.29
Consensus pattern (93 bp):
AAAGTCCACGACTCAGTGGCAATCTCTTCTCAAAGCCCACAACTCAGTGGCACCTTTTCCTTTAA
AGCCCACAACTCAGTGGCATTTTGTCTC
Found at i:69836 original size:40 final size:39
Alignment explanation
Indices: 69791--69937 Score: 140
Period size: 35 Copynumber: 4.0 Consensus size: 39
69781 TCCGTGGCAC
*
69791 CTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTT
1 CTTTTTCTTTTAAAGCCCACAACTC-GTGGCACTCTTTTT
69831 C----T-TTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CTTTTTCTTTTAAAGCCCACAACT-CGTGGCACTCTTTTT
*
69866 -TTTTCCTTTTTAAAGCCCACAACTACGTGGCACTC-TTTT
1 CTTTTTC-TTTTAAAGCCCACAACT-CGTGGCACTCTTTTT
69905 C-----C-TTTAAAGCCCACAACTACGTGGCACTCTTTT
1 CTTTTTCTTTTAAAGCCCACAACT-CGTGGCACTCTTTT
69938 CCTTCCAAAG
Statistics
Matches: 95, Mismatches: 3, Indels: 24
0.78 0.02 0.20
Matches are distributed among these distances:
33 27 0.28
34 3 0.03
35 31 0.33
36 2 0.02
39 4 0.04
40 28 0.29
ACGTcount: A:0.21, C:0.30, G:0.11, T:0.38
Consensus pattern (39 bp):
CTTTTTCTTTTAAAGCCCACAACTCGTGGCACTCTTTTT
Found at i:69844 original size:35 final size:34
Alignment explanation
Indices: 69607--69953 Score: 306
Period size: 32 Copynumber: 10.3 Consensus size: 34
69597 ATCTCTTCTC
* * * *
69607 AAAGTCCACGACTCAGTGGCA-TC-TTTTCCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* * * * *
69639 AAAGTCCACGACTCAGTGGCA-T-TTTGTC--TC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* * * *
69669 AAAGTCCACGACTCAGTGGCA-T-TTTTTC-TTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* *
69700 AAAGCCCACAACTTCGTGGCAC-C-TTTTCCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
69732 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT
69768 CAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTT
1 -AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* *
69802 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTC-TTTT
69837 AAAGCCCACAACTCCGTGGCACTCTTTTTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCACTC----TTTTT-C-TTTT
* *
69877 AAAGCCCACAACTACGTGGCACTC-TTTTCCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* * **
69910 AAAGCCCACAACTACGTGGCACTCTTTTCCTTCC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
69944 AAAGCCCACA
1 AAAGCCCACA
69954 CAAGTCGGTG
Statistics
Matches: 278, Mismatches: 19, Indels: 34
0.84 0.06 0.10
Matches are distributed among these distances:
30 28 0.10
31 24 0.09
32 49 0.18
33 49 0.18
34 32 0.12
35 30 0.11
36 10 0.04
37 22 0.08
39 5 0.02
40 29 0.10
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
Found at i:69898 original size:108 final size:101
Alignment explanation
Indices: 69667--69953 Score: 332
Period size: 108 Copynumber: 2.8 Consensus size: 101
69657 GCATTTTGTC
* * * *
69667 TCAAAGTCCACGACT-CAGTGGCATTTTTTCTTCAAAGCCCACAACT-TCGTGGCACC-TTTTCC
1 TCAAAGCCCACAACTAC-GTGGCACTTTTTCTTTAAAGCCCACAACTCT-GTGGCACCTTTTTCC
69729 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
64 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
*
69767 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTTC
1 TCAAAGCCCACAACTACGTGGCA-CTTTTTC-TTTAAAGCCCACAACTCTGTGGCAC-CTTTTTC
* *
69832 TTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTTTTTCCTTT
63 -CTTTAAAGCCCACAACTCCGTGGCACTC---TTTTTCCCTTT
*
69875 TTAAAGCCCACAACTACGTGGCACTCTTTTCCTTTAAAGCCCACAACTAC-GTGGCA-CTCTTTT
1 TCAAAGCCCACAACTACGTGGCACT-TTTT-CTTTAAAGCCCACAACT-CTGTGGCACCT-TTTT
*
69938 CCTTCCAAAGCCCACA
62 CCTT-TAAAGCCCACA
69954 CAAGTCGGTG
Statistics
Matches: 162, Mismatches: 10, Indels: 23
0.83 0.05 0.12
Matches are distributed among these distances:
100 19 0.12
101 7 0.04
102 22 0.14
103 2 0.01
104 5 0.03
105 27 0.17
106 4 0.02
107 17 0.10
108 57 0.35
109 2 0.01
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (101 bp):
TCAAAGCCCACAACTACGTGGCACTTTTTCTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTT
TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
Found at i:69966 original size:36 final size:33
Alignment explanation
Indices: 69605--69953 Score: 247
Period size: 33 Copynumber: 10.4 Consensus size: 33
69595 CAATCTCTTC
* *
69605 TCAAAGTCCACGACT-CAGTGGCA-TCTTTTCCT
1 TCAAAGCCCACAACTAC-GTGGCACTCTTTTCCT
* * *
69637 TTAAAGTCCACGACT-CAGTGGCA-T-TTTGT-C-
1 TCAAAGCCCACAACTAC-GTGGCACTCTTT-TCCT
* * *
69667 TCAAAGTCCACGACT-CAGTGGCA-T-TTTTTCT
1 TCAAAGCCCACAACTAC-GTGGCACTCTTTTCCT
*
69698 TCAAAGCCCACAACTTCGTGGCAC-CTTTTCCT
1 TCAAAGCCCACAACTACGTGGCACTCTTTTCCT
* *
69730 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
1 TCAAAGCCCACAACTACGTGGCACTC-TTTT-CC--T
* *
69767 TCAAAGCCCACAACTCCGTGGCAC-CTTTTTCTT
1 TCAAAGCCCACAACTACGTGGCACTC-TTTTCCT
* * *
69800 TTAAAGCCCACAACT-CTGTGGCACACTTTTTCTTT
1 TCAAAGCCCACAACTAC-GTGGCACTC-TTTTC-CT
* *
69835 TTAAAGCCCACAACTCCGTGGCACTCTTTTTTTTTCCTTT
1 TCAAAGCCCACAACTACGTGGCACTC-----TTTTCC--T
*
69875 TTAAAGCCCACAACTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTACGTGGCACTCTTTTCCT
*
69908 TTAAAGCCCACAACTACGTGGCACTCTTTTCCT
1 TCAAAGCCCACAACTACGTGGCACTCTTTTCCT
69941 TCCAAAGCCCACA
1 T-CAAAGCCCACA
69954 CAAGTCGGTG
Statistics
Matches: 281, Mismatches: 14, Indels: 42
0.83 0.04 0.12
Matches are distributed among these distances:
29 1 0.00
30 27 0.10
31 23 0.08
32 54 0.19
33 58 0.21
34 21 0.07
35 34 0.12
36 7 0.02
37 24 0.09
39 6 0.02
40 26 0.09
ACGTcount: A:0.22, C:0.32, G:0.13, T:0.33
Consensus pattern (33 bp):
TCAAAGCCCACAACTACGTGGCACTCTTTTCCT
Found at i:70234 original size:47 final size:49
Alignment explanation
Indices: 69980--70769 Score: 879
Period size: 49 Copynumber: 16.1 Consensus size: 49
69970 CTTCTAAGCT
* * *
69980 CAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
70029 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
* * * *
70072 CAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
*
70121 CAATGTAGCTGGCCGTGAATCAGCACATTGGCA-C--CA---TTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
70164 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCA-CTTCTAAG-C
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT-TAAGTC
* * *
70210 TCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
1 -CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
* *
70260 CAATGTAACTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
*
70309 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
*
70356 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
* *
70405 CAACGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
*
70452 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
* *
70499 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCATTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCA-T-CTTTAAGTC
* * * *
70551 CAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTC
* * *
70603 CAATGTAGCTGGCCTTGAATGAGCACATTGACATCCTTTTTCATCATCTTTAAGCC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC----T--TCATCTTTAAGTC
* * * * * *
70659 CAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTTCTCATCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA--------C--CTTCATCTTTAAGTC
* *
70718 CAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
70766 CAAT
1 CAAT
70770 ATCGCTAGCC
Statistics
Matches: 647, Mismatches: 56, Indels: 77
0.83 0.07 0.10
Matches are distributed among these distances:
43 79 0.12
44 2 0.00
45 1 0.00
46 4 0.01
47 171 0.26
48 21 0.03
49 196 0.30
50 6 0.01
51 1 0.00
52 75 0.12
53 6 0.01
54 1 0.00
55 3 0.00
56 35 0.05
57 1 0.00
59 41 0.06
61 1 0.00
63 2 0.00
65 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (49 bp):
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
Found at i:70284 original size:96 final size:94
Alignment explanation
Indices: 69980--70632 Score: 858
Period size: 96 Copynumber: 6.8 Consensus size: 94
69970 CTTCTAAGCT
* * *
69980 CAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
70045 GAATCAGCACATTGGCAC--CTTTAAGTC
66 GAATCAGCACATTGGCACTACTTTAAGTC
* * * * *
70072 CAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCGT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
*
70137 GAATCAGCACATTGGCAC--CATTAAGTC
66 GAATCAGCACATTGGCACTACTTTAAGTC
*
70164 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCA-CTTCTAAG-CTCAATATAGCTGGCC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT-TAAGTC-CAATGTAGCTGGCC
*
70225 TTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
64 TTGAATCAGCACATTGGCA-C--TA-CTTTAAGTC
* *
70260 CAATGTAACTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
70325 GAATCAGCACATTGGCACTCACCTTTAAGTC
66 GAATCAGCACATTGGCACT-A-CTTTAAGTC
* *
70356 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAACGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
70421 GAATCAGCACATTGGCACTCACCTTTAAGTC
66 GAATCAGCACATTGGCACT-A-CTTTAAGTC
*
70452 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
*
70515 GAATCAGCACATTGGCACCTTTAAGTCCATTAAGTC
66 GAATCAGCACATTGGCA-C--T-A---CTTTAAGTC
* * * *
70551 CAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCCAATGTAGCTGGC
*
70616 CTTGAATGAGCACATTG
63 CTTGAATCAGCACATTG
70633 ACATCCTTTT
Statistics
Matches: 510, Mismatches: 28, Indels: 34
0.89 0.05 0.06
Matches are distributed among these distances:
89 4 0.01
90 37 0.07
91 2 0.00
92 119 0.23
94 44 0.09
95 3 0.01
96 175 0.34
97 4 0.01
98 38 0.07
99 43 0.08
100 1 0.00
103 1 0.00
104 39 0.08
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.30
Consensus pattern (94 bp):
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
GAATCAGCACATTGGCACTACTTTAAGTC
Found at i:70445 original size:25 final size:25
Alignment explanation
Indices: 70417--70492 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
70407 ACGTAGCTGG
70417 CCTTGAATCAGCACATTGGCACTCA
1 CCTTGAATCAGCACATTGGCACTCA
* * **
70442 CCTTTAAGTC--CA-A-T-GTAGCTGG
1 CCTTGAA-TCAGCACATTGGCA-CTCA
70464 CCTTGAATCAGCACATTGGCACTCA
1 CCTTGAATCAGCACATTGGCACTCA
70489 CCTT
1 CCTT
70493 TAAGTCCAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
21 4 0.11
22 9 0.25
23 3 0.08
24 3 0.08
25 13 0.36
26 4 0.11
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (25 bp):
CCTTGAATCAGCACATTGGCACTCA
Found at i:70672 original size:56 final size:56
Alignment explanation
Indices: 70490--70754 Score: 246
Period size: 52 Copynumber: 4.8 Consensus size: 56
70480 TGGCACTCAC
* *
70490 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC--TTTAAGTC--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCA-TCAT
* * *
70542 CATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCA-CC-TTTTC--CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
* * * *
70594 CTTTAAGTTCAATGTAGCTGGCCTTGAATGAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
* * * * * *
70650 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCAT-CTTTTCTCATCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTT-TCA---TCAT
* * *
70709 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA-CCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTT
70755 ATCTTTAAGT
Statistics
Matches: 174, Mismatches: 27, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
50 1 0.01
52 75 0.43
53 5 0.03
54 5 0.03
55 5 0.03
56 39 0.22
59 44 0.25
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.34
Consensus pattern (56 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
Found at i:71538 original size:13 final size:13
Alignment explanation
Indices: 71520--71544 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71510 CATAAAATGT
71520 TGTATCGATACAA
1 TGTATCGATACAA
71533 TGTATCGATACA
1 TGTATCGATACA
71545 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:71542 original size:33 final size:33
Alignment explanation
Indices: 71500--71569 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
71490 TTCAACGATT
71500 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
71533 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
71566 TGTA
1 TGTA
71570 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:71627 original size:13 final size:13
Alignment explanation
Indices: 71609--71633 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
71599 ATTACTCACA
71609 TGTATCGATACAT
1 TGTATCGATACAT
71622 TGTATCGATACA
1 TGTATCGATACA
71634 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:71698 original size:52 final size:52
Alignment explanation
Indices: 71642--71762 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
71632 CACTGATCTT
*
71642 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
71694 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
71746 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
71763 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:80006 original size:32 final size:32
Alignment explanation
Indices: 79931--80311 Score: 249
Period size: 33 Copynumber: 11.4 Consensus size: 32
79921 CAAATACCTT
* * *
79931 TTTAAAGTCCACGACTCAGTGGCAATCTCTT-C
1 TTTAAAGCCCACAACTCAGTGGC-ATCTTTTCC
* * *
79963 -TCAAAGTCCACGACTCAGTGGCATCTTTTCC
1 TTTAAAGCCCACAACTCAGTGGCATCTTTTCC
* * *
79994 TTTAAAGTCCACGACTTAGTGGCAT-TTTGT-C
1 TTTAAAGCCCACAACTCAGTGGCATCTTT-TCC
* * * *
80025 -TCAAAGTCCACGACTCAGTGGCAT-TTTTTC
1 TTTAAAGCCCACAACTCAGTGGCATCTTTTCC
* *
80055 TTCAAAGCCCACAACTTC-GTGGCACCTTTTCC
1 TTTAAAGCCCACAAC-TCAGTGGCATCTTTTCC
*
80087 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCC
1 TTTAAAGCCCACAACTCAGTGGCA-TC-TTTT-CC
* * *
80122 TTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCT
1 -TTT-AAAGCCCACAACTCAGTGGCATC-TTTTCC
* * *
80157 TTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 TTTAAAGCCCACAACTCAGTGGCA-TC-TTTTC-C
* *
80192 TTTAAAGCCCACAACTCCGTGGCACTTTTTTTTTTTCC
1 TTTAAAGCCCACAACTCAGTGGCA------TCTTTTCC
80230 TTTTTAAAGCCCACAACT-ACGTGGCACTCTTTTCC
1 --TTTAAAGCCCACAACTCA-GTGGCA-TCTTTTCC
80265 TTTAAAGCCCACAACT-ACGTGGCACTCTTTTCC
1 TTTAAAGCCCACAACTCA-GTGGCA-TCTTTTCC
*
80298 TTCCAAAGCCCACA
1 TT-TAAAGCCCACA
80312 CAAGTCGGTG
Statistics
Matches: 300, Mismatches: 25, Indels: 46
0.81 0.07 0.12
Matches are distributed among these distances:
29 1 0.00
30 32 0.11
31 46 0.15
32 50 0.17
33 56 0.19
34 24 0.08
35 34 0.11
36 9 0.03
37 21 0.07
39 5 0.02
40 22 0.07
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.33
Consensus pattern (32 bp):
TTTAAAGCCCACAACTCAGTGGCATCTTTTCC
Found at i:80033 original size:30 final size:31
Alignment explanation
Indices: 79934--80117 Score: 187
Period size: 31 Copynumber: 5.9 Consensus size: 31
79924 ATACCTTTTT
*
79934 AAAGTCCACGACTCAGTGGCAATCTCTTC-TC
1 AAAGTCCACGACTCAGTGGC-ATCTTTTCTTC
*
79965 AAAGTCCACGACTCAGTGGCATCTTTTCCTTT
1 AAAGTCCACGACTCAGTGGCATCTTTT-CTTC
*
79997 AAAGTCCACGACTTAGTGGCAT-TTTGTC-TC
1 AAAGTCCACGACTCAGTGGCATCTTT-TCTTC
*
80027 AAAGTCCACGACTCAGTGGCATTTTTTCTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTTC
* * * *
80058 AAAGCCCACAACTTC-GTGGCACCTTTTCCTTT
1 AAAGTCCACGAC-TCAGTGGCATCTTTT-CTTC
* * *
80090 AAAGCCCACAACTCCGTGGCACTCTTTT
1 AAAGTCCACGACTCAGTGGCA-TCTTTT
80118 TCCCTTTTCA
Statistics
Matches: 133, Mismatches: 11, Indels: 16
0.83 0.07 0.10
Matches are distributed among these distances:
30 30 0.23
31 52 0.39
32 46 0.35
33 5 0.04
ACGTcount: A:0.23, C:0.30, G:0.16, T:0.31
Consensus pattern (31 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTTC
Found at i:80109 original size:93 final size:96
Alignment explanation
Indices: 79934--80220 Score: 287
Period size: 93 Copynumber: 2.9 Consensus size: 96
79924 ATACCTTTTT
* * * * *
79934 AAAGTCCACGACTCAGTGGCAATCTCTTC-TCAAAGTCCACGACTCAGTGGCATCTTTTCCTTTA
1 AAAGTCCACGACTCAGTGGC-ATTTTTTCTTCAAAGCCCACAACTCAGTGGCACCTTTTCCTTTA
* * **
79998 AAGTCCACGACTTAGTGGCA-TTTTGT-C-TC
65 AAGCCCACAACTCCGTGGCACTTTTGTCCTTC
80027 AAAGTCCACGACTCAGTGGCATTTTTTCTTCAAAGCCCACAACTTC-GTGGCACCTTTTCCTTTA
1 AAAGTCCACGACTCAGTGGCATTTTTTCTTCAAAGCCCACAAC-TCAGTGGCACCTTTTCCTTTA
*
80091 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTC
65 AAGCCCACAACTCCGTGGCACT-TTTGT-CC--TTC
* * * * * * *
80127 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTTCTT
1 AAAGTCCACGACTCAGTGGCA-TTTTTTC-TTCAAAGCCCACAACTCAGTGGCAC-C-TTTTC-C
80192 TTTAAAGCCCACAACTCCGTGGCACTTTT
61 TTTAAAGCCCACAACTCCGTGGCACTTTT
80221 TTTTTTTCCT
Statistics
Matches: 163, Mismatches: 16, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
92 6 0.04
93 65 0.40
94 3 0.02
95 4 0.02
97 1 0.01
100 20 0.12
101 8 0.05
102 21 0.13
103 1 0.01
104 8 0.05
105 26 0.16
ACGTcount: A:0.23, C:0.31, G:0.14, T:0.32
Consensus pattern (96 bp):
AAAGTCCACGACTCAGTGGCATTTTTTCTTCAAAGCCCACAACTCAGTGGCACCTTTTCCTTTAA
AGCCCACAACTCCGTGGCACTTTTGTCCTTC
Found at i:80194 original size:40 final size:39
Alignment explanation
Indices: 80149--80267 Score: 117
Period size: 40 Copynumber: 3.1 Consensus size: 39
80139 TCCGTGGCAC
80149 CTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTT
1 CTTTTTCTTTTAAAGCCCACAACTC-GTGGCACACTTTTT
80189 C----T-TTTTAAAGCCCACAACTCCGTGG--CACTTTTT
1 CTTTTTCTTTTAAAGCCCACAACT-CGTGGCACACTTTTT
* * *
80222 TTTTTTCCTTTTTAAAGCCCACAACTACGTGGCACTCTTTTC
1 CTTTTT-C-TTTTAAAGCCCACAACT-CGTGGCACACTTTTT
80264 CTTT
1 CTTT
80268 AAAGCCCACA
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
33 8 0.12
35 21 0.33
36 2 0.03
37 1 0.02
40 23 0.36
42 9 0.14
ACGTcount: A:0.19, C:0.29, G:0.10, T:0.42
Consensus pattern (39 bp):
CTTTTTCTTTTAAAGCCCACAACTCGTGGCACACTTTTT
Found at i:80202 original size:35 final size:34
Alignment explanation
Indices: 80027--80311 Score: 296
Period size: 33 Copynumber: 8.3 Consensus size: 34
80017 ATTTTGTCTC
* * * *
80027 AAAGTCCACGACTCAGTGGCA-T-TTTTTC-TTC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* *
80058 AAAGCCCACAACTTCGTGGCAC-C-TTTTCCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
80090 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTT--CTTTT
80126 CAAAGCCCACAACTCCGTGGCAC-CTTTTTCTTTT
1 -AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* *
80160 AAAGCCCACAACTCTGTGGCACACTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTC-TTTT
*
80195 AAAGCCCACAACTCCGTGGCACTTTTTTTTTTTCCTTTTT
1 AAAGCCCACAACTCCGTGGCAC----TCTTTTT-C-TTTT
* *
80235 AAAGCCCACAACTACGTGGCACTC-TTTTCCTTT
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
* * **
80268 AAAGCCCACAACTACGTGGCACTCTTTTCCTTCC
1 AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
80302 AAAGCCCACA
1 AAAGCCCACA
80312 CAAGTCGGTG
Statistics
Matches: 220, Mismatches: 18, Indels: 29
0.82 0.07 0.11
Matches are distributed among these distances:
31 22 0.10
32 23 0.10
33 49 0.22
34 32 0.15
35 29 0.13
36 11 0.05
37 22 0.10
39 5 0.02
40 27 0.12
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTT
Found at i:80255 original size:108 final size:101
Alignment explanation
Indices: 80025--80311 Score: 323
Period size: 108 Copynumber: 2.8 Consensus size: 101
80015 GCATTTTGTC
* * * *
80025 TCAAAGTCCACGACT-CAGTGGCATTTTTTCTTCAAAGCCCACAACT-TCGTGGCACC-TTTTCC
1 TCAAAGCCCACAACTAC-GTGGCACTTTTTCTTTAAAGCCCACAACTCT-GTGGCACCTTTTTCC
80087 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
64 TTTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
*
80125 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACACTTTTTC
1 TCAAAGCCCACAACTACGTGGCA-CTTTTTC-TTTAAAGCCCACAACTCTGTGGCAC-CTTTTTC
* * *
80190 TTTTTAAAGCCCACAACTCCGTGGCACTTTTTTTTTTTCCTTT
63 -CTTTAAAGCCCACAACTCCGTGGCAC---TCTTTTTCCCTTT
*
80233 TTAAAGCCCACAACTACGTGGCACTCTTTTCCTTTAAAGCCCACAACTAC-GTGGCA-CTCTTTT
1 TCAAAGCCCACAACTACGTGGCACT-TTTT-CTTTAAAGCCCACAACT-CTGTGGCACCT-TTTT
*
80296 CCTTCCAAAGCCCACA
62 CCTT-TAAAGCCCACA
80312 CAAGTCGGTG
Statistics
Matches: 161, Mismatches: 11, Indels: 23
0.83 0.06 0.12
Matches are distributed among these distances:
100 19 0.12
101 7 0.04
102 22 0.14
103 2 0.01
104 5 0.03
105 25 0.16
106 4 0.02
107 17 0.11
108 58 0.36
109 2 0.01
ACGTcount: A:0.22, C:0.33, G:0.12, T:0.33
Consensus pattern (101 bp):
TCAAAGCCCACAACTACGTGGCACTTTTTCTTTAAAGCCCACAACTCTGTGGCACCTTTTTCCTT
TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTT
Found at i:80400 original size:49 final size:48
Alignment explanation
Indices: 80338--81039 Score: 950
Period size: 49 Copynumber: 14.6 Consensus size: 48
80328 CTTCTAAGCT
* *
80338 CAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
80387 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA---C--CTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
* * *
80430 CAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
*
80479 CAATGTAGCTGGCCGTGAATCAGCACATTGGCAC--CA---TTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
80522 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
80571 CAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-TCA-CTTCTAAG-C
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTT-TAAGTC
* * *
80617 TCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTC
1 -CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
* *
80667 CAATGTAACTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
*
80716 CAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
*
80763 CAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CTTCATCTTTAAGTC
* *
80812 CAACGTAGCTGGCCTTGAATCAGCACATTGGCAC-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
*
80859 CAATGTAGCTGGCCTTGAATCAGCACATTGGCAC-TCACCTTTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
* *
80906 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCATTAAGTC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TTCA-T-CTTTAAGTC
* * * *
80958 CAATATAGCTGGCCTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C--TT-CATCTTTAAGTC
81010 CAATGTAGCTGGCCTTGAATCAGCACATTG
1 CAATGTAGCTGGCCTTGAATCAGCACATTG
81040 ACATCCTTTT
Statistics
Matches: 587, Mismatches: 39, Indels: 51
0.87 0.06 0.08
Matches are distributed among these distances:
43 78 0.13
44 1 0.00
45 1 0.00
46 8 0.01
47 174 0.30
48 7 0.01
49 233 0.40
50 6 0.01
52 74 0.13
53 4 0.01
54 1 0.00
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.30
Consensus pattern (48 bp):
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACTTCATCTTTAAGTC
Found at i:80672 original size:96 final size:96
Alignment explanation
Indices: 80338--81176 Score: 970
Period size: 96 Copynumber: 8.6 Consensus size: 96
80328 CTTCTAAGCT
* * *
80338 CAATATAGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
80403 GAATCAGCACATTGGCA--C--CTTTAAGTC
66 GAATCAGCACATTGGCACTCATCTTTAAGTC
* * * * *
80430 CAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCGT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
80495 GAATCAGCACATTGGCAC-CA---TTAAGTC
66 GAATCAGCACATTGGCACTCATCTTTAAGTC
80522 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
80587 GAATCAGCACATTGGCACTCA-CTTCTAAG-C
66 GAATCAGCACATTGGCACTCATCTT-TAAGTC
* * * *
80617 TCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTTTAAGTCCAATGTAACTGGCCT
1 -CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCT
*
80682 TGACTCAGCACATTGGCACCTTCATCTTTAAGTC
65 TGAATCAGCACATTGGCA-C-TCATCTTTAAGTC
*
80716 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
*
80779 GACTCAGCACATTGGCACCTTCATCTTTAAGTC
66 GAATCAGCACATTGGCA-C-TCATCTTTAAGTC
* *
80812 CAACGTAGCTGGCCTTGAATCAGCACATTGGCA-C-TCACCTTTAAGTCCAATGTAGCTGGCCTT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
*
80875 GAATCAGCACATTGGCACTCACCTTTAAGTC
66 GAATCAGCACATTGGCACTCATCTTTAAGTC
* * *
80906 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCATTAAGTCCAATATAGCTGGC
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACC-TTCA-T-CTTTAAGTCCAATGTAGCTGGC
* * *
80971 CTTGAATCAGCATATCGGCACCTTTTCCATCTTTAAGTT
63 CTTGAATCAGCACATTGGCA-C---T-CATCTTTAAGTC
* * * * *
81010 CAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCATCTTTAAGCCCAATATCGT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC----T--TCATCTTTAAGTCCAATGTAGC
* * *
81075 TGGCCGTGAATCAACATATTGGCATCTTTTCTCATCTTCATCTTTAAGTC
59 TGGCCTTGAATCAGCACATTGG----------CA-C-TCATCTTTAAGTC
* *
81125 CAATGTCGTTGGCCTTGAATCAGCACATTGGCACCTT-ATCTTTAAGTCCAAT
1 CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAAT
81177 ATCGCTAGCC
Statistics
Matches: 666, Mismatches: 44, Indels: 59
0.87 0.06 0.08
Matches are distributed among these distances:
92 165 0.25
93 3 0.00
94 44 0.07
95 4 0.01
96 218 0.33
97 4 0.01
98 38 0.06
99 42 0.06
100 1 0.00
103 1 0.00
104 42 0.06
105 2 0.00
107 14 0.02
108 36 0.05
109 1 0.00
110 3 0.00
114 2 0.00
115 41 0.06
116 2 0.00
118 3 0.00
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (96 bp):
CAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTT
GAATCAGCACATTGGCACTCATCTTTAAGTC
Found at i:80852 original size:25 final size:25
Alignment explanation
Indices: 80824--80899 Score: 63
Period size: 25 Copynumber: 3.2 Consensus size: 25
80814 ACGTAGCTGG
80824 CCTTGAATCAGCACATTGGCACTCA
1 CCTTGAATCAGCACATTGGCACTCA
* * **
80849 CCTTTAAGTC--CA-A-T-GTAGCTGG
1 CCTTGAA-TCAGCACATTGGCA-CTCA
80871 CCTTGAATCAGCACATTGGCACTCA
1 CCTTGAATCAGCACATTGGCACTCA
80896 CCTT
1 CCTT
80900 TAAGTCCAAT
Statistics
Matches: 36, Mismatches: 8, Indels: 14
0.62 0.14 0.24
Matches are distributed among these distances:
21 4 0.11
22 9 0.25
23 3 0.08
24 3 0.08
25 13 0.36
26 4 0.11
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (25 bp):
CCTTGAATCAGCACATTGGCACTCA
Found at i:81085 original size:56 final size:56
Alignment explanation
Indices: 80897--81161 Score: 255
Period size: 52 Copynumber: 4.8 Consensus size: 56
80887 TGGCACTCAC
* *
80897 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-CC--TTTAAGTC--
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCA-TCAT
* * *
80949 CATTAAGTCCAATATAGCTGGCCTTGAATCAGCATATCGGCA-CC-TTTTC--CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
* * *
81001 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCATCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
* * * * * *
81057 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCAT-CTTTTCTCATCTTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTT-TCA---TCAT
* * *
81116 CTTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGGCA-CCTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTT
81162 ATCTTTAAGT
Statistics
Matches: 176, Mismatches: 25, Indels: 17
0.81 0.11 0.08
Matches are distributed among these distances:
50 1 0.01
52 76 0.43
53 5 0.03
54 5 0.03
55 5 0.03
56 40 0.23
59 44 0.25
ACGTcount: A:0.25, C:0.25, G:0.16, T:0.34
Consensus pattern (56 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCATCCTTTTTCATCAT
Found at i:81945 original size:13 final size:13
Alignment explanation
Indices: 81927--81951 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81917 CATAAAATGT
81927 TGTATCGATACAA
1 TGTATCGATACAA
81940 TGTATCGATACA
1 TGTATCGATACA
81952 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:81949 original size:33 final size:33
Alignment explanation
Indices: 81907--81976 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
81897 TTCAACGATT
81907 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
81940 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
81973 TGTA
1 TGTA
81977 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:82034 original size:13 final size:13
Alignment explanation
Indices: 82016--82040 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
82006 ATTACTCACA
82016 TGTATCGATACAT
1 TGTATCGATACAT
82029 TGTATCGATACA
1 TGTATCGATACA
82041 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:82105 original size:52 final size:52
Alignment explanation
Indices: 82049--82169 Score: 224
Period size: 52 Copynumber: 2.3 Consensus size: 52
82039 CACTGATCTT
*
82049 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
*
82101 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
82153 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
82170 TAACTTTTCA
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 67 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:88049 original size:79 final size:79
Alignment explanation
Indices: 87944--88145 Score: 253
Period size: 79 Copynumber: 2.6 Consensus size: 79
87934 GAGATAATAA
* * * ** * *
87944 CGGGGTTGGAGTGTCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATGA
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAAT-A
*
88009 -TTAGGAAATAAAAT
65 TTTAGGAAATAAAAC
* * *
88023 CGGGATTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCTAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATAT
* *
88088 TTTGGAAATAAAGC
66 TTAGGAAATAAAAC
**
88102 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCC
1 CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCC
88146 TCGATGAAAT
Statistics
Matches: 106, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
78 1 0.01
79 105 0.99
ACGTcount: A:0.28, C:0.16, G:0.31, T:0.25
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCAATTATGAAAAATCAATAT
TTAGGAAATAAAAC
Found at i:88158 original size:28 final size:28
Alignment explanation
Indices: 88102--88178 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
88092 GAAATAAAGC
**
88102 CGGGGTTGGAGTATCCCCTCG--GAGGTAA
1 CGGGGTTGGAGTAT--CCTCGATGAAATAA
88130 CGGGGTTGGAGTATCCTCGATGAAATAA
1 CGGGGTTGGAGTATCCTCGATGAAATAA
*
88158 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCTCGAT
88179 TGTGAAATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 5 0.11
28 39 0.89
ACGTcount: A:0.22, C:0.18, G:0.35, T:0.25
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCTCGATGAAATAA
Found at i:88225 original size:52 final size:50
Alignment explanation
Indices: 88161--88556 Score: 253
Period size: 52 Copynumber: 7.6 Consensus size: 50
88151 GAAATAACGA
* * *
88161 GGTTGGAGTATCCTCGATTGTGAAATTTTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTGAAA-ATTGGTG-TTTTGGAAATAAAACCGG
* *
88213 GGTTGGAGTATCCCCGATTAAAG-GAAAATTGGTGTTTTGAAAATGAAACCGG
1 GGTTGGAGTATCCCCGATT---GTGAAAATTGGTGTTTTGGAAATAAAACCGG
* *
88265 GGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTGT-GAAAATTGGTGTTTTGGAAATAAAACCGG
* *** * * *
88316 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGGAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTGTGA-AAATTGGTGTTTTGGAAATAAAACCGG
* ** * * **** * *
88367 GGTTGGAGTATCCCCTCGGA-GGT-AACGGGGTTGGAGTATCCCCAATGAGATAA-TGA
1 GGTTGGAGTAT-CCC-C-GATTGTGAA---AATTGGTGTTTTGGAAAT-A-A-AACCGG
** *
88423 GGTTGGAGTATCCTTGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTGTG-AAAATTGGTG-TTTTGGAAATAAAACCGG
* * * *
88475 AGTTGGAGTATCCCCGATTAAAG-GAAAATTGGTGTTTTGAAAATAAAATCGA
1 GGTTGGAGTATCCCCGATT---GTGAAAATTGGTGTTTTGGAAATAAAACCGG
* *
88527 GGTTGGTGTATCCCCGATTATGAACAATTG
1 GGTTGGAGTATCCCCGATTGTGAA-AATTG
88557 AGAAACTTAA
Statistics
Matches: 265, Mismatches: 54, Indels: 51
0.72 0.15 0.14
Matches are distributed among these distances:
49 1 0.00
50 5 0.02
51 85 0.32
52 107 0.40
53 26 0.10
54 20 0.08
55 5 0.02
56 15 0.06
57 1 0.00
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTGTGAAAATTGGTGTTTTGGAAATAAAACCGG
Found at i:88313 original size:51 final size:50
Alignment explanation
Indices: 88161--88381 Score: 244
Period size: 51 Copynumber: 4.3 Consensus size: 50
88151 GAAATAACGA
* * * * *
88161 GGTTGGAGTATCCTCGATTGTGAAATTTTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAA-ATTAGTG-TTTTGGAAATAAAACCGG
* * * *
88213 GGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATGAAACCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAATTAGTGTTTTGGAAATAAAACCGG
* *
88265 GGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAATTAGTGTTTTGGAAATAAAACCGG
* * * * *
88316 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGGAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGA-AAATTAGTGTTTTGGAAATAAAACCGG
88367 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
88382 TCGGAGGTAA
Statistics
Matches: 145, Mismatches: 20, Indels: 9
0.83 0.11 0.05
Matches are distributed among these distances:
50 2 0.01
51 81 0.56
52 52 0.36
53 6 0.04
54 4 0.03
ACGTcount: A:0.29, C:0.12, G:0.29, T:0.30
Consensus pattern (50 bp):
GGTTGGAGTATCCCCGATTATGAAAATTAGTGTTTTGGAAATAAAACCGG
Found at i:88364 original size:262 final size:262
Alignment explanation
Indices: 88051--88545 Score: 855
Period size: 262 Copynumber: 1.9 Consensus size: 262
88041 TCGGAAATAA
*
88051 CGGGGTTGGAGTATCCCTAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* *
88116 CCCCTCGGAGGTAACGGGGTTGGAGTATCCTCGATGAAATAACGAGGTTGGAGTATCCTCGATTG
66 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCTCGATTG
** *
88181 TGAAATTTTGGTGTTTTTGGAAATAAAATCGGGGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
131 TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
* *
88246 GTTTTGAAAATGAAACCGGGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAA
196 GTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAA
88311 AC
261 AC
* *
88313 CGGGGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAGTAT
1 CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
* * *
88378 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAGATAATGAGGTTGGAGTATCCTTGATTG
66 CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCTCGATTG
88443 TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
131 TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
* *
88508 GTTTTGAAAATAAAATCGAGGTTGGTGTATCCCCGATT
196 GTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCGATT
88546 ATGAACAATT
Statistics
Matches: 218, Mismatches: 15, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
262 218 1.00
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (262 bp):
CGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGAAATAAAGCCGGGGTTGGAGTAT
CCCCTCGGAGGTAACGGGGTTGGAGTATCCCCAATGAAATAACGAGGTTGGAGTATCCTCGATTG
TGAAAAATTGGTGTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGGAAAATTGGT
GTTTTGAAAATAAAACCGAGGTTGGAGTATCCCCGATTGTGGAAAATTAGTGTTTTAGAAATAAA
AC
Found at i:88426 original size:28 final size:28
Alignment explanation
Indices: 88367--88435 Score: 84
Period size: 28 Copynumber: 2.5 Consensus size: 28
88357 ATAAAGCCGG
** * *
88367 GGTTGGAGTATCCCCTCGGAGGTAACGG
1 GGTTGGAGTATCCCCAAGGAGATAACGA
* *
88395 GGTTGGAGTATCCCCAATGAGATAATGA
1 GGTTGGAGTATCCCCAAGGAGATAACGA
88423 GGTTGGAGTATCC
1 GGTTGGAGTATCC
88436 TTGATTGTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.23, C:0.17, G:0.35, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCAAGGAGATAACGA
Found at i:90890 original size:21 final size:21
Alignment explanation
Indices: 90864--90920 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
90854 GTAAACTTCC
90864 TAGATGTATCGATACA-AAGAA
1 TAGATGTATCGATACACAA-AA
90885 TAGATGTATCGATACACAAAA
1 TAGATGTATCGATACACAAAA
*
90906 -AAATGTATCGATACA
1 TAGATGTATCGATACA
90921 TTTCCTTGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 14 0.41
21 18 0.53
22 2 0.06
ACGTcount: A:0.47, C:0.12, G:0.16, T:0.25
Consensus pattern (21 bp):
TAGATGTATCGATACACAAAA
Found at i:90962 original size:13 final size:13
Alignment explanation
Indices: 90944--90995 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
90934 AGCTTCCTAG
90944 CGATACATTGTAT
1 CGATACATTGTAT
90957 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
90976 CGATACATTGTAT
1 CGATACATTGTAT
90989 CGATACA
1 CGATACA
90996 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:90976 original size:19 final size:19
Alignment explanation
Indices: 90952--91037 Score: 76
Period size: 19 Copynumber: 4.7 Consensus size: 19
90942 AGCGATACAT
90952 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
90971 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
90984 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
** *
91003 TGTATCGATACATTTACTGAA
1 TGTATCGATACA-AAACT-TA
91024 TGTATCGATACAAA
1 TGTATCGATACAAA
91038 TTATTGGAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 15
0.73 0.07 0.20
Matches are distributed among these distances:
13 11 0.20
14 1 0.02
16 2 0.04
18 1 0.02
19 23 0.43
20 3 0.06
21 13 0.24
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:90985 original size:32 final size:32
Alignment explanation
Indices: 90944--91016 Score: 137
Period size: 32 Copynumber: 2.3 Consensus size: 32
90934 AGCTTCCTAG
90944 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
90976 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
91008 CGATACATT
1 CGATACATT
91017 TACTGAATGT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:91099 original size:21 final size:22
Alignment explanation
Indices: 91073--91130 Score: 75
Period size: 21 Copynumber: 2.7 Consensus size: 22
91063 GTTGGGACCT
* *
91073 TGTATCGATACATTTGTA-GAA
1 TGTATCGATACATTTGCACAAA
*
91094 TGTATCGATACA-TTCCACAAA
1 TGTATCGATACATTTGCACAAA
91115 TGTATCGATACATTTG
1 TGTATCGATACATTTG
91131 GATAAAAATG
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
20 3 0.10
21 26 0.84
22 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.36
Consensus pattern (22 bp):
TGTATCGATACATTTGCACAAA
Found at i:95393 original size:20 final size:19
Alignment explanation
Indices: 95367--95411 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
95357 CATCCCATGT
95367 AAAAAAAATCAAAAATCAA
1 AAAAAAAATCAAAAATCAA
* *
95386 ATAAAAAAGTCAAAAGTCAA
1 A-AAAAAAATCAAAAATCAA
95406 AAAAAA
1 AAAAAA
95412 TTTTAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 6 0.26
20 17 0.74
ACGTcount: A:0.76, C:0.09, G:0.04, T:0.11
Consensus pattern (19 bp):
AAAAAAAATCAAAAATCAA
Found at i:95421 original size:12 final size:11
Alignment explanation
Indices: 95404--95446 Score: 50
Period size: 12 Copynumber: 3.7 Consensus size: 11
95394 GTCAAAAGTC
95404 AAAAAAAATTTT
1 AAAAAAAA-TTT
**
95416 AAAAAAAAAGT
1 AAAAAAAATTT
95427 AGAAAAAAATTT
1 A-AAAAAAATTT
95439 AAAAAAAA
1 AAAAAAAA
95447 GGCAAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.77, C:0.00, G:0.05, T:0.19
Consensus pattern (11 bp):
AAAAAAAATTT
Found at i:95432 original size:23 final size:24
Alignment explanation
Indices: 95397--95456 Score: 79
Period size: 23 Copynumber: 2.6 Consensus size: 24
95387 TAAAAAAGTC
*
95397 AAAAGTCAAAAAAAATTTTAAAAA
1 AAAAGTCAAAAAAAAATTTAAAAA
*
95421 AAAAGT-AGAAAAAAATTT-AAAA
1 AAAAGTCAAAAAAAAATTTAAAAA
*
95443 AAAAGGCAAAAAAA
1 AAAAGTCAAAAAAA
95457 GAAAAAGAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 9 0.29
23 16 0.52
24 6 0.19
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.15
Consensus pattern (24 bp):
AAAAGTCAAAAAAAAATTTAAAAA
Found at i:95432 original size:24 final size:23
Alignment explanation
Indices: 95397--95456 Score: 79
Period size: 22 Copynumber: 2.6 Consensus size: 23
95387 TAAAAAAGTC
95397 AAAAGTCAAAAAAAATTTTAAAAA
1 AAAAGTCAAAAAAAA-TTTAAAAA
95421 AAAAGT-AGAAAAAAATTT-AAAA
1 AAAAGTCA-AAAAAAATTTAAAAA
*
95443 AAAAGGCAAAAAAA
1 AAAAGTCAAAAAAA
95457 GAAAAAGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
22 15 0.45
23 5 0.15
24 13 0.39
ACGTcount: A:0.73, C:0.03, G:0.08, T:0.15
Consensus pattern (23 bp):
AAAAGTCAAAAAAAATTTAAAAA
Found at i:95482 original size:20 final size:20
Alignment explanation
Indices: 95439--95476 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95429 AAAAAAATTT
95439 AAAAAAAAGGCAAAAAAAGA
1 AAAAAAAAGGCAAAAAAAGA
95459 AAAAGAAAA-GCAAAAAAA
1 AAAA-AAAAGGCAAAAAAA
95477 ACAAAACACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.82, C:0.05, G:0.13, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGGCAAAAAAAGA
Found at i:97307 original size:31 final size:31
Alignment explanation
Indices: 97231--97415 Score: 210
Period size: 31 Copynumber: 5.9 Consensus size: 31
97221 AGCAATCCCT
* *
97231 TTTCAAAAGCCCACACAAGTCGATGGCAACATT
1 TTTCAAAAGCCCACACAAGTCGGTGGCAAC--C
** *
97264 TTTTTAAAGCCCACACAAGTCGGTAGCAACC
1 TTTCAAAAGCCCACACAAGTCGGTGGCAACC
* *
97295 CTTCAAAAGCCCACACAAGTCAGTGGCAACC
1 TTTCAAAAGCCCACACAAGTCGGTGGCAACC
* * *
97326 TTTCAAAAG-CCATACAAGTTGATGGCAACC
1 TTTCAAAAGCCCACACAAGTCGGTGGCAACC
*
97356 TTTCTAAAGCCCACACAAGTCGGTGGCAACCC
1 TTTCAAAAGCCCACACAAGTCGGTGGCAA-CC
* * *
97388 TTTTAAAAGCCCACATAAGTCAGTGGCA
1 TTTCAAAAGCCCACACAAGTCGGTGGCA
97416 TCTCCTTCTA
Statistics
Matches: 127, Mismatches: 23, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
30 25 0.20
31 50 0.39
32 26 0.20
33 26 0.20
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.21
Consensus pattern (31 bp):
TTTCAAAAGCCCACACAAGTCGGTGGCAACC
Found at i:97373 original size:61 final size:60
Alignment explanation
Indices: 97231--97408 Score: 194
Period size: 61 Copynumber: 2.8 Consensus size: 60
97221 AGCAATCCCT
* * *
97231 TTTCAAAAGCCCACACAAGTCGATGGCAACATTTTTTTAAAGCCCACACAAGTCGGTAGCAACC
1 TTTCAAAAGCCCACACAAGTCG-TGGCAAC--CTTTTAAAAG-CCACACAAGTCGATAGCAACC
* * * * *
97295 CTTCAAAAGCCCACACAAGTCAGTGGCAACCTTTCAAAAGCCATACAAGTTGATGGCAACC
1 TTTCAAAAGCCCACACAAGTC-GTGGCAACCTTTTAAAAGCCACACAAGTCGATAGCAACC
* *
97356 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTTAAAAGCCCACATAAGTC
1 TTTCAAAAGCCCACACAAGTC-GTGGCAA-CCTTTTAAAAG-CCACACAAGTC
97409 AGTGGCATCT
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
61 43 0.45
62 17 0.18
63 8 0.08
64 27 0.28
65 1 0.01
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (60 bp):
TTTCAAAAGCCCACACAAGTCGTGGCAACCTTTTAAAAGCCACACAAGTCGATAGCAACC
Found at i:97665 original size:52 final size:52
Alignment explanation
Indices: 97603--97895 Score: 216
Period size: 52 Copynumber: 5.5 Consensus size: 52
97593 TCTGATATCA
* * *
97603 CTAGCTTTGAATCAGCATATTGGCATTGTTATCACTTTTAAGCCCAATGTCG
1 CTAGCCTTGAATCAGCATATTGGCACTCTTATCACTTTTAAGCCCAATGTCG
* * * * * * * *
97655 TTGGCCTTGAATCAACAAATT-GCACGTCTCAAACCATCTCTTTTTAAGTCCAATGTCA
1 CTAGCCTTGAATCAGCATATTGGCAC-TCT-----TATCAC-TTTTAAGCCCAATGTCG
* * * *
97713 CTAGCCTTGAATCAGCATATTAGCACTCTTCTCA-TCTTTAATCCCAATGTTG
1 CTAGCCTTGAATCAGCATATTGGCACTCTTATCACT-TTTAAGCCCAATGTCG
* * * **** * *
97765 CTGGCCTTGAATCAGCATATTGGCACTTTTGTCA-TCTTTAAGTTTGATATCA
1 CTAGCCTTGAATCAGCATATTGGCACTCTTATCACT-TTTAAGCCCAATGTCG
* * *
97817 CTAG-CTTGGAATCAGCATATTGGCACCCTTATCACTTTGAAGCCCAATATCG
1 CTAGCCTT-GAATCAGCATATTGGCACTCTTATCACTTTTAAGCCCAATGTCG
*
97869 CTAGCCTTGAATCAGCACATTGGCACT
1 CTAGCCTTGAATCAGCATATTGGCACT
97896 TTTCTCATCC
Statistics
Matches: 183, Mismatches: 46, Indels: 24
0.72 0.18 0.09
Matches are distributed among these distances:
51 7 0.04
52 127 0.69
53 6 0.03
57 4 0.02
58 35 0.19
59 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.15, T:0.34
Consensus pattern (52 bp):
CTAGCCTTGAATCAGCATATTGGCACTCTTATCACTTTTAAGCCCAATGTCG
Found at i:97799 original size:214 final size:217
Alignment explanation
Indices: 97424--97882 Score: 647
Period size: 214 Copynumber: 2.1 Consensus size: 217
97414 CATCTCCTTC
* * * *
97424 TAAGCCCAATGTCATTGGCCTTAAATCAACACATTAGCACATGTCAAACCATCTCTTTTTAAGTC
1 TAAGCCCAATGTCGTTGGCCTTGAATCAACAAATTAGCACATCTCAAACCATCTCTTTTTAAGTC
* * * *
97489 CAATGTCACTAGGCACTCTAAATAGTATATTAGCACTCTTTTCATTTTTAAACCCAATGTTGTTG
66 CAATGTCACTAGGCACTCTAAATAGCATATTAGCACTCTTCTCATCTTTAAACCCAATGTTGCTG
** *
97554 TTCTTGAATCAACATATTGACACCATTGTCATCTTTAAGTCTGATATCACTAGCTTTGAATCAGC
131 GCCTTGAATCAACATATTGACACCATTGTCATCTTTAAGTCTGATATCACTAGCTTGGAATCAGC
***
97619 ATATTGGCATTGTTATCACTTT
196 ATATTGGCACCCTTATCACTTT
*
97641 TAAGCCCAATGTCGTTGGCCTTGAATCAACAAATT-GCACGTCTCAAACCATCTCTTTTTAAGTC
1 TAAGCCCAATGTCGTTGGCCTTGAATCAACAAATTAGCACATCTCAAACCATCTCTTTTTAAGTC
* *
97705 CAATGTCACTA-GC-CT-TGAATCAGCATATTAGCACTCTTCTCATCTTTAATCCCAATGTTGCT
66 CAATGTCACTAGGCACTCTAAAT-AGCATATTAGCACTCTTCTCATCTTTAAACCCAATGTTGCT
* * ** *
97767 GGCCTTGAATCAGCATATTGGCACTTTTGTCATCTTTAAGTTTGATATCACTAGCTTGGAATCAG
130 GGCCTTGAATCAACATATTGACACCATTGTCATCTTTAAGTCTGATATCACTAGCTTGGAATCAG
97832 CATATTGGCACCCTTATCACTTT
195 CATATTGGCACCCTTATCACTTT
* * * *
97855 GAAGCCCAATATCGCTAGCCTTGAATCA
1 TAAGCCCAATGTCGTTGGCCTTGAATCA
97883 GCACATTGGC
Statistics
Matches: 215, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
213 4 0.02
214 139 0.65
215 2 0.01
216 38 0.18
217 32 0.15
ACGTcount: A:0.28, C:0.24, G:0.14, T:0.35
Consensus pattern (217 bp):
TAAGCCCAATGTCGTTGGCCTTGAATCAACAAATTAGCACATCTCAAACCATCTCTTTTTAAGTC
CAATGTCACTAGGCACTCTAAATAGCATATTAGCACTCTTCTCATCTTTAAACCCAATGTTGCTG
GCCTTGAATCAACATATTGACACCATTGTCATCTTTAAGTCTGATATCACTAGCTTGGAATCAGC
ATATTGGCACCCTTATCACTTT
Found at i:97876 original size:104 final size:102
Alignment explanation
Indices: 97515--97904 Score: 341
Period size: 104 Copynumber: 3.7 Consensus size: 102
97505 TCTAAATAGT
* * * * * * ** * **
97515 ATATTAGCACTCTTTTCATTTTTAAACCCAATGTTGTTGTTCTTGAATCAACATATTGACACCAT
1 ATATTGGCACTCTTATCA-CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACTTT
97580 TGTCATCTTTAAGTCTGATATCACTAGCTTTGAATCAGC
65 TGTCATCTTTAAGTCTGATATCACTAGC-TTGAATCAGC
* * * *
97619 ATATTGGCATTGTTATCACTTTTAAGCCCAATGTCGTTGGCCTTGAATCAACAAATT-GCACGTC
1 ATATTGGCACTCTTATCAC-TTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCAC-T-
**** ** *
97683 TCAAACCATCTCTTTTTAAGTCCAATGTCACTAGCCTTGAATCAGC
63 T-TTGTCA--TC--TTTAAGTCTGATATCACTAG-CTTGAATCAGC
* * * * *
97729 ATATTAGCACTCTTCTCATCTTTAATCCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACTTT
1 ATATTGGCACTCTTATCA-CTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACTTT
*
97794 TGTCATCTTTAAGTTTGATATCACTAGCTTGGAATCAGC
65 TGTCATCTTTAAGTCTGATATCACTAGCTT-GAATCAGC
* * * * *
97833 ATATTGGCACCCTTATCACTTTGAAGCCCAATATCGCTAGCCTTGAATCAGCACATTGGCACTTT
1 ATATTGGCACTCTTATCACTTT-AAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACTTT
*
97898 TCTCATC
65 TGTCATC
97905 CTTATCATTT
Statistics
Matches: 227, Mismatches: 46, Indels: 26
0.76 0.15 0.09
Matches are distributed among these distances:
103 10 0.04
104 128 0.56
106 4 0.02
108 4 0.02
109 1 0.00
110 74 0.33
111 6 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (102 bp):
ATATTGGCACTCTTATCACTTTAAGCCCAATGTCGCTGGCCTTGAATCAACATATTGGCACTTTT
GTCATCTTTAAGTCTGATATCACTAGCTTGAATCAGC
Found at i:98561 original size:20 final size:20
Alignment explanation
Indices: 98522--98575 Score: 81
Period size: 20 Copynumber: 2.6 Consensus size: 20
98512 TTCTATAATT
*
98522 TGTATCAATACAACAAGTGAA
1 TGTATCAATAC-ATAAGTGAA
*
98543 TGTATCGATACATAAGTGAA
1 TGTATCAATACATAAGTGAA
98563 TGTATCAATACAT
1 TGTATCAATACAT
98576 GTTTGAAATG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
20 20 0.67
21 10 0.33
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (20 bp):
TGTATCAATACATAAGTGAA
Found at i:98582 original size:20 final size:20
Alignment explanation
Indices: 98522--98595 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 20
98512 TTCTATAATT
* *
98522 TGTATCAATACAACAAGTGAA
1 TGTATCGATAC-ATAAGTGAA
98543 TGTATCGATACATAAGTGAA
1 TGTATCGATACATAAGTGAA
* ***
98563 TGTATCAATACATGTTTGAAA
1 TGTATCGATACATAAGTG-AA
98584 TGTATCGATACA
1 TGTATCGATACA
98596 AGACCTTTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 22 0.49
21 23 0.51
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:98797 original size:103 final size:101
Alignment explanation
Indices: 98632--98820 Score: 274
Period size: 103 Copynumber: 1.9 Consensus size: 101
98622 TTTGGAAAGA
98632 AAATGTATCGATACATTTTCACTGTACTGATACATTCTGGGTTTTGATCCAAATGTATCGATACA
1 AAATGTATCGATACATTTTCACTGTACTGATACATTCTGGGTTTTGATCCAAATGTATCGATACA
* *
98697 TTCTTCATTATATTGATACATTTTGGGTTTTGATCC
66 TTCTTCAATATATCGATACATTTTGGGTTTTGATCC
* * *
98733 AAATGTATCGATACATTCTTCATTGTA-TCGATATATTCTAGGTTTTTGA-CCTAAATGTATCGA
1 AAATGTATCGATACATT-TTCACTGTACT-GATACATTCT-GGGTTTTGATCC-AAATGTATCGA
*
98796 TACATTCTTCAATGTATCGATACAT
62 TACATTCTTCAATATATCGATACAT
98821 CTAGTTAAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
101 18 0.23
102 19 0.24
103 41 0.53
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.42
Consensus pattern (101 bp):
AAATGTATCGATACATTTTCACTGTACTGATACATTCTGGGTTTTGATCCAAATGTATCGATACA
TTCTTCAATATATCGATACATTTTGGGTTTTGATCC
Found at i:98802 original size:52 final size:51
Alignment explanation
Indices: 98632--98820 Score: 267
Period size: 51 Copynumber: 3.7 Consensus size: 51
98622 TTTGGAAAGA
*
98632 AAATGTATCGATACATT-TTCACTGTA-CTGATACATTCTGGGTTTTGATCC
1 AAATGTATCGATACATTCTTCATTGTATC-GATACATTCTGGGTTTTGATCC
* * *
98682 AAATGTATCGATACATTCTTCATTATATTGATACATTTTGGGTTTTGATCC
1 AAATGTATCGATACATTCTTCATTGTATCGATACATTCTGGGTTTTGATCC
* *
98733 AAATGTATCGATACATTCTTCATTGTATCGATATATTCTAGGTTTTTGA-CC
1 AAATGTATCGATACATTCTTCATTGTATCGATACATTCT-GGGTTTTGATCC
*
98784 TAAATGTATCGATACATTCTTCAATGTATCGATACAT
1 -AAATGTATCGATACATTCTTCATTGTATCGATACAT
98821 CTAGTTAAAT
Statistics
Matches: 124, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
50 17 0.14
51 65 0.52
52 42 0.34
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.42
Consensus pattern (51 bp):
AAATGTATCGATACATTCTTCATTGTATCGATACATTCTGGGTTTTGATCC
Found at i:108970 original size:52 final size:52
Alignment explanation
Indices: 108892--109019 Score: 202
Period size: 52 Copynumber: 2.5 Consensus size: 52
108882 CCCGAAATAT
* *
108892 GAAAATTTGCTTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAG
* *
108944 GAAAATTTGCCTGCCTGTATCGATACATTTTATAGTGTATCGATACATCTAG
1 GAAAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAG
* *
108996 GCAAATTTGCCTACATGTATCGAT
1 GAAAATTTGCCTGCATGTATCGAT
109020 GCAAAGATCA
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 69 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (52 bp):
GAAAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTAG
Found at i:109033 original size:52 final size:52
Alignment explanation
Indices: 108892--109042 Score: 169
Period size: 52 Copynumber: 2.9 Consensus size: 52
108882 CCCGAAATAT
* * *** *
108892 GAAAATTTGCTTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGG
1 GAAAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTAG
* * ***
108944 GAAAATTTGCCTGCCTGTATCGATACATTTTATAGTGTATCGATACATCTAG
1 GAAAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTAG
* *
108996 GCAAATTTGCCTACATGTATCGATGCA-AAGATCAGTGTATCGATACA
1 GAAAATTTGCCTACATGTATCGATACATAAGAT-AGTGTATCGATACA
109043 ATGTATCGAT
Statistics
Matches: 87, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
51 2 0.02
52 85 0.98
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (52 bp):
GAAAATTTGCCTACATGTATCGATACATAAGATAGTGTATCGATACATCTAG
Found at i:109049 original size:13 final size:13
Alignment explanation
Indices: 109031--109055 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
109021 CAAAGATCAG
109031 TGTATCGATACAA
1 TGTATCGATACAA
109044 TGTATCGATACA
1 TGTATCGATACA
109056 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:109122 original size:19 final size:17
Alignment explanation
Indices: 109098--109175 Score: 55
Period size: 13 Copynumber: 4.8 Consensus size: 17
109088 TACCTTACAT
109098 TGTATCGATACAAAACGTA
1 TGTATCGATAC-AAAC-TA
*
109117 TGTATCAATAC--A-T-
1 TGTATCGATACAAACTA
109130 TGTATCGATACAACACTTA
1 TGTATCGATACAA-AC-TA
109149 TGTATCGATAC--A-T-
1 TGTATCGATACAAACTA
109162 TGTATCGATACAAA
1 TGTATCGATACAAA
109176 TCGTTGAAAT
Statistics
Matches: 49, Mismatches: 2, Indels: 20
0.69 0.03 0.28
Matches are distributed among these distances:
13 21 0.43
14 2 0.04
15 1 0.02
16 3 0.06
18 1 0.02
19 21 0.43
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (17 bp):
TGTATCGATACAAACTA
Found at i:109134 original size:32 final size:32
Alignment explanation
Indices: 109093--109175 Score: 139
Period size: 32 Copynumber: 2.6 Consensus size: 32
109083 GGCAGTACCT
109093 TACATTGTATCGATACAAAACGTATGTATCAA
1 TACATTGTATCGATACAAAACGTATGTATCAA
* * *
109125 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACGTATGTATCAA
109157 TACATTGTATCGATACAAA
1 TACATTGTATCGATACAAA
109176 TCGTTGAAAT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACGTATGTATCAA
Found at i:110016 original size:49 final size:49
Alignment explanation
Indices: 109931--110199 Score: 316
Period size: 49 Copynumber: 5.6 Consensus size: 49
109921 CGAAGAATGA
* * * * *
109931 CAATGTGCTGCTTCATGGCCAGCGACATTGATCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
* * ** * *
109980 CAATATGCTGATTCAAAGCCAACGATACCGAACTTAAAGATGAAGATGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
* * **
110029 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
110078 CAATATGCTGATTCAAGGCCAGCGATATTGAACTT--A-A--A-GGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
* * * * *
110121 CAATGTGTTGGTTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGC
1 CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
110170 CAATATGCTGATTCAAGGCCAGCGATATTG
1 CAATATGCTGATTCAAGGCCAGCGATATTG
110200 GATTTAGAAG
Statistics
Matches: 180, Mismatches: 34, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
43 35 0.19
44 1 0.01
45 1 0.01
46 2 0.01
47 1 0.01
48 1 0.01
49 139 0.77
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (49 bp):
CAATATGCTGATTCAAGGCCAGCGATATTGAACTTAAAGATGACGGTGC
Found at i:110104 original size:98 final size:95
Alignment explanation
Indices: 109922--110196 Score: 394
Period size: 98 Copynumber: 2.9 Consensus size: 95
109912 TCGAAGATGC
* * * *
109922 GAAGAATGACAATGTGCTGCTTCATGGCCAGCGACATTGATCTTAAAGATGACGGTGCCAATATG
1 GAAG-ATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATG
* *
109987 CTGATTCAAAGCCAACGATACCGAACTTAAAGA
65 CTGATTCAAGGCCAGCGATACCGAACTT-AA-A
110020 TGAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATG
1 -GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATG
**
110085 CTGATTCAAGGCCAGCGATATTGAACTTAAA
65 CTGATTCAAGGCCAGCGATACCGAACTTAAA
* * *
110116 G--G-TGCCAATGTGTTGGTTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGC
1 GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGC
110178 TGATTCAAGGCCAGCGATA
66 TGATTCAAGGCCAGCGATA
110197 TTGGATTTAG
Statistics
Matches: 165, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
92 76 0.46
93 1 0.01
95 1 0.01
96 1 0.01
97 2 0.01
98 80 0.48
99 4 0.02
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (95 bp):
GAAGATGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGC
TGATTCAAGGCCAGCGATACCGAACTTAAA
Found at i:110171 original size:92 final size:97
Alignment explanation
Indices: 109931--110199 Score: 397
Period size: 92 Copynumber: 2.8 Consensus size: 97
109921 CGAAGAATGA
* *
109931 CAATGTGCTGCTTCATGGCCAGCGACATT-GATCTTAAAGATGACGGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGA-CTTAAAGATGACGGTGCCAATATGCTGATTCA
* * **
109995 AAGCCAACGATACCGAACTTAAAGATGAAGATGC
65 AGGCCAGCGATATTGAACTTAAAGATG-AGATGC
*
110029 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGACGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
110094 GGCCAGCGATATTGAACTT-AA-A-G-G-TGC
66 GGCCAGCGATATTGAACTTAAAGATGAGATGC
* *
110121 CAATGTGTTGGTTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
110186 GGCCAGCGATATTG
66 GGCCAGCGATATTG
110200 GATTTAGAAG
Statistics
Matches: 160, Mismatches: 10, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
92 79 0.49
93 1 0.01
95 1 0.01
96 1 0.01
97 2 0.01
98 75 0.47
99 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (97 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGACGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGAACTTAAAGATGAGATGC
Found at i:110267 original size:28 final size:28
Alignment explanation
Indices: 110227--110589 Score: 389
Period size: 28 Copynumber: 12.6 Consensus size: 28
110217 CACCAACTTG
110227 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
*
110255 TGTGGGCTTTTGAAAAGGGTGCCACTGA-T
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
110284 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
110312 TGTGGGCTTTGGGAGAAGGGTGCCACTGATT
1 TGTGGGCTTT---TGAAGGTTGCCACTGACT
110343 TGTGGGC-TTTGAAAAAGAG-TGCCACTGACT
1 TGTGGGCTTTTG---AAG-GTTGCCACTGACT
110373 TGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* * *
110401 TGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT-TG--AAGGTTGCCACTGACT
110432 TGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
110459 TGTGGGC-TTTGAAAGGTTGCCACTGACT
1 TGTGGGCTTTTG-AAGGTTGCCACTGACT
* * *
110487 TGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTT-TG--AAGGTTGCCACTGACT
*
110518 TGTGGGC-TTTGAAGGTCGCCACTGACT
1 TGTGGGCTTTTGAAGGTTGCCACTGACT
* *
110545 TGTGGGC-TTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTTG--AAGGTTGCCACTGACT
*
110574 TATGGGCTTTTGAAGG
1 TGTGGGCTTTTGAAGG
110590 GTAAGGAATA
Statistics
Matches: 288, Mismatches: 25, Indels: 44
0.81 0.07 0.12
Matches are distributed among these distances:
27 64 0.22
28 73 0.25
29 37 0.13
30 44 0.15
31 70 0.24
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.31
Consensus pattern (28 bp):
TGTGGGCTTTTGAAGGTTGCCACTGACT
Found at i:110388 original size:58 final size:55
Alignment explanation
Indices: 110227--110583 Score: 375
Period size: 58 Copynumber: 6.2 Consensus size: 55
110217 CACCAACTTG
110227 TGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTGA-T
1 TGTGGGC-TTTGAAAGG-TGCCACTGACTTGTGGGCTTTTG--AAGGGTGCCACTGACT
* *
110284 TGTGGGCTTTTG-AAGGTTGCCACTGACTTGTGGGCTTTGGGAGAAGGGTGCCACTGATT
1 TGTGGGC-TTTGAAAGG-TGCCACTGACTTGTGGGCTTT---TGAAGGGTGCCACTGACT
*
110343 TGTGGGCTTTGAAAAAGAGTGCCACTGACTTGTGGGCTTTTGAAGGTTGCCACTGACT
1 TGTGGGCTTTG--AAAG-GTGCCACTGACTTGTGGGCTTTTGAAGGGTGCCACTGACT
* *
110401 TGTGGGCTTTGGGAAAAGGGTGCCACTGATTTGTGGGC-TTTGAAGGTTGCCACTGACT
1 TGTGGGCTTT--G-AAA-GGTGCCACTGACTTGTGGGCTTTTGAAGGGTGCCACTGACT
* *
110459 TGTGGGCTTTGAAAGGTTGCCACTGACTTGTGGGCTTTGGGAAAAGGGTGCCACTGATT
1 TGTGGGCTTTGAAAGG-TGCCACTGACTTGTGGGCTTT-TG--AAGGGTGCCACTGACT
* *
110518 TGTGGGCTTTG-AAGGTCGCCACTGACTTGTGGGC-TTTGAAAAAGATGCCACTGACT
1 TGTGGGCTTTGAAAGGT-GCCACTGACTTGTGGGCTTTTG--AAGGGTGCCACTGACT
*
110574 TATGGGCTTT
1 TGTGGGCTTT
110584 TGAAGGGTAA
Statistics
Matches: 269, Mismatches: 14, Indels: 35
0.85 0.04 0.11
Matches are distributed among these distances:
54 2 0.01
55 20 0.07
56 28 0.10
57 42 0.16
58 94 0.35
59 55 0.20
60 3 0.01
61 24 0.09
62 1 0.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (55 bp):
TGTGGGCTTTGAAAGGTGCCACTGACTTGTGGGCTTTTGAAGGGTGCCACTGACT
Found at i:110503 original size:86 final size:87
Alignment explanation
Indices: 110239--110583 Score: 504
Period size: 86 Copynumber: 3.9 Consensus size: 87
110229 TGGGCTTTTG
* * *
110239 AAGGTTGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTGA-TTGTGGGCTTTTGAAGGTTG
1 AAGGGTGCCACTGATTTGTGGGC-TTTG-AAAGGTTGCCACTGACTTGTGGGCTTTTGAAGGTTG
*
110303 CCACTGACTTGTGGGCTTTGGGAG
64 CCACTGACTTGTGGGCTTTGGGAA
110327 AAGGGTGCCACTGATTTGTGGGCTTTGAAAAAGAG-TGCCACTGACTTGTGGGCTTTTGAAGGTT
1 AAGGGTGCCACTGATTTGTGGGCTTTG--AAAG-GTTGCCACTGACTTGTGGGCTTTTGAAGGTT
110391 GCCACTGACTTGTGGGCTTTGGGAA
63 GCCACTGACTTGTGGGCTTTGGGAA
110416 AAGGGTGCCACTGATTTGTGGGCTTTG-AAGGTTGCCACTGACTTGTGGGC-TTTGAAAGGTTGC
1 AAGGGTGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTGACTTGTGGGCTTTTG-AAGGTTGC
110479 CACTGACTTGTGGGCTTTGGGAA
65 CACTGACTTGTGGGCTTTGGGAA
* * *
110502 AAGGGTGCCACTGATTTGTGGGCTTTG-AAGGTCGCCACTGACTTGTGGGC-TTTGAAAAAGATG
1 AAGGGTGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTGACTTGTGGGCTTTTG--AAGGTTG
*
110565 CCACTGACTTATGGGCTTT
64 CCACTGACTTGTGGGCTTT
110584 TGAAGGGTAA
Statistics
Matches: 244, Mismatches: 7, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
85 5 0.02
86 105 0.43
87 28 0.11
88 35 0.14
89 71 0.29
ACGTcount: A:0.19, C:0.17, G:0.34, T:0.31
Consensus pattern (87 bp):
AAGGGTGCCACTGATTTGTGGGCTTTGAAAGGTTGCCACTGACTTGTGGGCTTTTGAAGGTTGCC
ACTGACTTGTGGGCTTTGGGAA
Found at i:113029 original size:28 final size:27
Alignment explanation
Indices: 112996--113067 Score: 101
Period size: 28 Copynumber: 2.6 Consensus size: 27
112986 GGAATAAAGC
112996 CGGGGTTGGAGTATCCCC-TCGAAAGTAA
1 CGGGGTTGGAGTATCCCCAT-GAAA-TAA
113024 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCC-ATGAAATAA
*
113052 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
113068 TCGATTGTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 36 0.88
29 4 0.10
30 1 0.02
ACGTcount: A:0.25, C:0.19, G:0.33, T:0.22
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCCATGAAATAA
Found at i:113214 original size:51 final size:51
Alignment explanation
Indices: 113055--113225 Score: 198
Period size: 51 Copynumber: 3.3 Consensus size: 51
113045 GAAATAACGA
* * *
113055 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTA-TTTTGAAAATAAAATCGG
* * * * * * *
113107 AGTTGGAGTATCCCCGATAAAAGGAGAAATTGGTGTTGTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGAT--TATGAAAAATTGGTATTTTGAAAATAAAATCGG
* * *
113160 GGTTGGAGTATCCCCGATTATGAAAAATCGATATTTTGAAAATAAAGTCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
113211 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
113226 TCAGAAATAA
Statistics
Matches: 97, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
51 39 0.40
52 16 0.16
53 32 0.33
54 10 0.10
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.29
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTATTTTGAAAATAAAATCGG
Found at i:113271 original size:27 final size:28
Alignment explanation
Indices: 113208--113283 Score: 102
Period size: 27 Copynumber: 2.8 Consensus size: 28
113198 AAAATAAAGT
*
113208 CGGGGTTGGAGTATCCCCTCA-GAAATAA
1 CGGGGTTGGAGTATCCCC-GATGAAATAA
*
113236 CGGGGTTGGAGTATCCCCGATG-ATTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
*
113263 CGGGGTTGGAGTGTCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
113284 TGTGAAGAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
27 25 0.57
28 19 0.43
ACGTcount: A:0.21, C:0.21, G:0.34, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:115758 original size:13 final size:13
Alignment explanation
Indices: 115740--115765 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
115730 ACAAAGATCC
115740 ATGTATCGATACA
1 ATGTATCGATACA
115753 ATGTATCGATACA
1 ATGTATCGATACA
115766 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:115761 original size:33 final size:33
Alignment explanation
Indices: 115719--115785 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
115709 AAAATTTCCA
***
115719 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
115752 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
115785 A
1 A
115786 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:115829 original size:19 final size:18
Alignment explanation
Indices: 115805--115872 Score: 83
Period size: 19 Copynumber: 3.9 Consensus size: 18
115795 CAGTAGCTAA
115805 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
115824 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
115839 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
115856 TTATGTATCGATACAAA
1 TTATGTATCGATACAAA
115873 TTGTTGAATT
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
16 2 0.05
18 4 0.09
19 25 0.58
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:115845 original size:13 final size:13
Alignment explanation
Indices: 115827--115851 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
115817 ACAATACTTA
115827 TGTATCGATACAT
1 TGTATCGATACAT
115840 TGTATCGATACA
1 TGTATCGATACA
115852 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:115849 original size:32 final size:32
Alignment explanation
Indices: 115808--115870 Score: 117
Period size: 32 Copynumber: 2.0 Consensus size: 32
115798 TAGCTAATTA
*
115808 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
115840 TGTATCGATACAAAACTTATGTATCGATACA
1 TGTATCGATACAAAACTTATGTATCGATACA
115871 AATTGTTGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.37, C:0.16, G:0.13, T:0.35
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:115952 original size:21 final size:21
Alignment explanation
Indices: 115928--115984 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
115918 CATTTGTAGG
115928 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
115949 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
115970 ATGTATCGATACATT
1 ATGTATCGATACATT
115985 TAAATTTTTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:116014 original size:14 final size:14
Alignment explanation
Indices: 115997--116024 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
115987 AATTTTTTTT
115997 TTTTTTTTTTTCAA
1 TTTTTTTTTTTCAA
116011 TTTTTTTTTTTCAA
1 TTTTTTTTTTTCAA
116025 ACACTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (14 bp):
TTTTTTTTTTTCAA
Found at i:116688 original size:55 final size:55
Alignment explanation
Indices: 116593--117286 Score: 823
Period size: 55 Copynumber: 12.3 Consensus size: 55
116583 ATAAAGTGTA
* * * * * * *
116593 TCCTTCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
116648 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
116703 TCCTGCTCTTTGGGGAATGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
*
116758 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
* *
116813 TCCTGTTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAA-AGGTG
* * **
116868 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAAGACAAAGCA
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGTG
* *
116929 TCCTGCTCTTTGAGGACT-AAAGGTGCCACCAACTTGGGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
* * *
116988 TCCCGCTATTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGTG
* * *
117047 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTAAAAAAAATGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT----GAAAGGTG
*
117105 TCCCGCTCTTTGAGGACTG-AAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
117159 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
117214 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
*
117269 TCCTGCTCTTTGGGGACT
1 TCCTGCTCTTTGAGGACT
117287 AAAAAGCGGA
Statistics
Matches: 586, Mismatches: 37, Indels: 32
0.89 0.06 0.05
Matches are distributed among these distances:
54 31 0.05
55 334 0.57
56 8 0.01
58 53 0.09
59 111 0.19
60 28 0.05
61 20 0.03
62 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGTG
Found at i:117236 original size:27 final size:27
Alignment explanation
Indices: 117151--117236 Score: 68
Period size: 27 Copynumber: 3.1 Consensus size: 27
117141 TGTGGGCTTT
117151 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
* ** * * * *
117178 GAAA-ATG-CCACCAACTTGTGTGGGCTTT
1 GAAAGGTGTCCTGC-TCTT-TGAGGAC-TG
117206 GAAAGGTGTCCTGCTCTTTGAGGACTG
1 GAAAGGTGTCCTGCTCTTTGAGGACTG
117233 GAAA
1 GAAA
117237 ATGCCACCAA
Statistics
Matches: 40, Mismatches: 14, Indels: 10
0.62 0.22 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.12
27 14 0.35
28 10 0.25
29 5 0.12
30 3 0.08
ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28
Consensus pattern (27 bp):
GAAAGGTGTCCTGCTCTTTGAGGACTG
Found at i:118315 original size:10 final size:10
Alignment explanation
Indices: 118281--118318 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
118271 CTTTGTTTTG
118281 TTTTTTTGTT
1 TTTTTTTGTT
*
118291 TTTTTTCTCTT
1 TTTTTT-TGTT
118302 TTTTTTTGTT
1 TTTTTTTGTT
118312 TTTTTTT
1 TTTTTTT
118319 TGAAGAGAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.00, C:0.05, G:0.05, T:0.89
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:118317 original size:32 final size:37
Alignment explanation
Indices: 118252--118319 Score: 108
Period size: 34 Copynumber: 1.9 Consensus size: 37
118242 TAAGTAGGTT
118252 TTTTCTTTTCTCTCTTTTTCTTTGTTTTGTTTTTTTG
1 TTTTCTTTTCTCTCTTTTTCTTTGTTTTGTTTTTTTG
118289 TTTT-TTTTCTCT-TTTTT-TTTGTTTT-TTTTTT
1 TTTTCTTTTCTCTCTTTTTCTTTGTTTTGTTTTTT
118320 GAAGAGAAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
33 6 0.19
34 8 0.26
35 5 0.16
36 8 0.26
37 4 0.13
ACGTcount: A:0.00, C:0.10, G:0.06, T:0.84
Consensus pattern (37 bp):
TTTTCTTTTCTCTCTTTTTCTTTGTTTTGTTTTTTTG
Found at i:118318 original size:11 final size:11
Alignment explanation
Indices: 118266--118320 Score: 58
Period size: 11 Copynumber: 4.9 Consensus size: 11
118256 CTTTTCTCTC
*
118266 TTTTTCTTTGTT
1 TTTTTTTTTG-T
118278 TTGTTTTTTTGT
1 TT-TTTTTTTGT
* *
118290 TTTTTTTCT-C
1 TTTTTTTTTGT
118300 TTTTTTTTTGT
1 TTTTTTTTTGT
118311 TTTTTTTTTG
1 TTTTTTTTTG
118321 AAGAGAAGGT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
10 8 0.22
11 16 0.44
12 5 0.14
13 7 0.19
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.85
Consensus pattern (11 bp):
TTTTTTTTTGT
Found at i:122412 original size:1 final size:1
Alignment explanation
Indices: 122408--122492 Score: 53
Period size: 1 Copynumber: 85.0 Consensus size: 1
122398 GTTGTTGTTG
* * * * * * * * *
122408 TTTTTGTTTTTTTTTTGTTTTTATTTTTTGTTTTTTGTTTTTTTGTTTTTTTCTTCTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * **
122473 TGTTTATTTGGTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTT
122493 CTGTGGAGGA
Statistics
Matches: 60, Mismatches: 24, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
1 60 1.00
ACGTcount: A:0.02, C:0.04, G:0.09, T:0.85
Consensus pattern (1 bp):
T
Found at i:122434 original size:15 final size:14
Alignment explanation
Indices: 122414--122492 Score: 79
Period size: 15 Copynumber: 5.5 Consensus size: 14
122404 GTTGTTTTTG
122414 TTTTTTTTTTG-TT
1 TTTTTTTTTTGTTT
*
122427 TTTATTTTTTGTTT
1 TTTTTTTTTTGTTT
122441 TTTGTTTTTTTGTTT
1 TTT-TTTTTTTGTTT
* * *
122456 TTTTCTTCTTCTTT
1 TTTTTTTTTTGTTT
*
122470 TTTTGTTTATTTGGTT
1 TTTT-TTT-TTTGTTT
122486 TTTTTTT
1 TTTTTTT
122493 CTGTGGAGGA
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
13 10 0.19
14 17 0.32
15 18 0.34
16 8 0.15
ACGTcount: A:0.03, C:0.04, G:0.09, T:0.85
Consensus pattern (14 bp):
TTTTTTTTTTGTTT
Found at i:122434 original size:22 final size:21
Alignment explanation
Indices: 122393--122477 Score: 77
Period size: 22 Copynumber: 4.0 Consensus size: 21
122383 ATCCGAACCC
*
122393 TTTTTGTTGTTGTTGTTTTTGTT
1 TTTTTTTTGTT-TT-TTTTTGTT
*
122416 TTTTTTTTGTTTTTATTT-TT
1 TTTTTTTTGTTTTTTTTTGTT
*
122436 TGTTTTTTG--TTTTTTTGTT
1 TTTTTTTTGTTTTTTTTTGTT
* *
122455 TTTTTCTTCTTCTTTTTTTGTT
1 TTTTTTTTGTT-TTTTTTTGTT
122477 T
1 T
122478 ATTTGGTTTT
Statistics
Matches: 51, Mismatches: 7, Indels: 9
0.76 0.10 0.13
Matches are distributed among these distances:
18 6 0.12
19 8 0.16
20 10 0.20
21 4 0.08
22 13 0.25
23 10 0.20
ACGTcount: A:0.01, C:0.04, G:0.12, T:0.84
Consensus pattern (21 bp):
TTTTTTTTGTTTTTTTTTGTT
Found at i:122439 original size:30 final size:31
Alignment explanation
Indices: 122405--122494 Score: 98
Period size: 31 Copynumber: 2.9 Consensus size: 31
122395 TTTGTTGTTG
*
122405 TTGTTTTTGTTTTTTTTTTGTTTTTATT-TT-
1 TTGTTTTTGTTTTTTTGTT-TTTTTATTCTTC
*
122435 TTGTTTTTTGTTTTTTTGTTTTTTTCTTCTTC
1 TTG-TTTTTGTTTTTTTGTTTTTTTATTCTTC
*
122467 TT-TTTTTGTTTATTTGGTTTTTTT-TTCT
1 TTGTTTTTGTTT-TTTTGTTTTTTTATTCT
122495 GTGGAGGATG
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
30 23 0.43
31 28 0.53
32 2 0.04
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.83
Consensus pattern (31 bp):
TTGTTTTTGTTTTTTTGTTTTTTTATTCTTC
Found at i:122457 original size:6 final size:6
Alignment explanation
Indices: 122399--122449 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 6
122389 ACCCTTTTTG
* *
122399 TTGTTG TTGTTT TTGTTT TT-TTT TTGTTT TTATTTT TTGTTTT TTGTTT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGTTT TT-GTTT TTG-TTT TTGTTT
122448 TT
1 TT
122450 TTGTTTTTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
5 5 0.13
6 23 0.59
7 11 0.28
ACGTcount: A:0.02, C:0.00, G:0.14, T:0.84
Consensus pattern (6 bp):
TTGTTT
Found at i:122487 original size:39 final size:39
Alignment explanation
Indices: 122393--122490 Score: 112
Period size: 39 Copynumber: 2.5 Consensus size: 39
122383 ATCCGAACCC
* * * *
122393 TTTTTG-TTGTTGTTGTTTTTGTTTTTTTTTTGTTTTTAT
1 TTTTTGTTTTTTGTT-TTTTTGTTTTTTTCTTGCTTCTAT
122432 TTTTTGTTTTTTGTTTTTTTGTTTTTTTCTT-CTTCT-T
1 TTTTTGTTTTTTGTTTTTTTGTTTTTTTCTTGCTTCTAT
122469 TTTTTGTTTATTTGGTTTTTTT
1 TTTTTGTTT-TTT-GTTTTTTT
122491 TTCTGTGGAG
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
37 10 0.19
38 6 0.12
39 29 0.56
40 7 0.13
ACGTcount: A:0.02, C:0.03, G:0.12, T:0.83
Consensus pattern (39 bp):
TTTTTGTTTTTTGTTTTTTTGTTTTTTTCTTGCTTCTAT
Found at i:131137 original size:104 final size:104
Alignment explanation
Indices: 130948--131144 Score: 306
Period size: 104 Copynumber: 1.9 Consensus size: 104
130938 ATATGAAAAG
* * *
130948 TTGCTTGCATGTATCGGTACATTTAATAGTGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
***
131013 TCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
66 TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
*
131052 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
1 TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
*
131117 TCGATACA-AAGATCAGTGTATCGATACA
66 TCGATACATAAGAT-AATGTATCGATACA
131145 ATGTATCGAT
Statistics
Matches: 84, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
103 2 0.02
104 82 0.98
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (104 bp):
TTGCCTGCATGTATCGATACATTTAATAATGTATCGATACATCTGGGCAAATTTGCCTGCATGTA
TCGATACATAAGATAATGTATCGATACATCTGGGCAAAT
Found at i:131144 original size:52 final size:52
Alignment explanation
Indices: 130948--131124 Score: 318
Period size: 52 Copynumber: 3.4 Consensus size: 52
130938 ATATGAAAAG
* * * *
130948 TTGCTTGCATGTATCGGTACATTTAATAGTGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
131000 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
131052 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
1 TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
131104 TTGCCTGCATGTATCGATACA
1 TTGCCTGCATGTATCGATACA
131125 AAGATCAGTG
Statistics
Matches: 121, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 121 1.00
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.36
Consensus pattern (52 bp):
TTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGCAAAT
Found at i:131151 original size:13 final size:13
Alignment explanation
Indices: 131133--131157 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
131123 CAAAGATCAG
131133 TGTATCGATACAA
1 TGTATCGATACAA
131146 TGTATCGATACA
1 TGTATCGATACA
131158 TGTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Done.