Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold47
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2157611
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.32
Warning! 149227 characters in sequence are not A, C, G, or T
File 1 of 15
Found at i:3190 original size:17 final size:17
Alignment explanation
Indices: 3168--3203 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
3158 AAAATATTGA
* *
3168 ACATACTCATATCTGAC
1 ACATACGCATATATGAC
3185 ACATACGCATATATGAC
1 ACATACGCATATATGAC
3202 AC
1 AC
3204 TCACACTCAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.39, C:0.28, G:0.08, T:0.25
Consensus pattern (17 bp):
ACATACGCATATATGAC
Found at i:5113 original size:8 final size:8
Alignment explanation
Indices: 5098--5136 Score: 55
Period size: 8 Copynumber: 5.1 Consensus size: 8
5088 TTTTATTTTT
5098 TTAT-TTA
1 TTATATTA
5105 TTATATTA
1 TTATATTA
*
5113 TTATAATA
1 TTATATTA
5121 TTATATTA
1 TTATATTA
5129 TTAT-TTA
1 TTATATTA
5136 T
1 T
5137 ATAATTAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 8 0.28
8 21 0.72
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TTATATTA
Found at i:5182 original size:34 final size:39
Alignment explanation
Indices: 5117--5186 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 39
5107 ATATTATTAT
*
5117 AATATTATATTATTATTTATATAATTAAATTTAAATAAA
1 AATATTATATTATTATTTAAATAATTAAATTTAAATAAA
5156 AATATT-T-TTATTA-TTAAATAA-T-AATTTAAAT
1 AATATTATATTATTATTTAAATAATTAAATTTAAAT
5187 CTCATTAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 9 0.30
35 1 0.03
36 7 0.23
37 6 0.20
38 1 0.03
39 6 0.20
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (39 bp):
AATATTATATTATTATTTAAATAATTAAATTTAAATAAA
Found at i:5751 original size:9 final size:8
Alignment explanation
Indices: 5737--5861 Score: 55
Period size: 8 Copynumber: 15.0 Consensus size: 8
5727 AGAATTAATA
5737 ATTTATCAT
1 ATTTAT-AT
5746 ATTTATAAAT
1 ATTTAT--AT
*
5756 TTTTATAT
1 ATTTATAT
5764 ATTATTATTAT
1 A-T-TTA-TAT
5775 ATTTATA-
1 ATTTATAT
5782 ATATTATAT
1 AT-TTATAT
5791 ATTTATAT
1 ATTTATAT
5799 AAATATTAATAT
1 --AT-TT-ATAT
*
5811 ATTAATA-
1 ATTTATAT
5818 ATTTATAT
1 ATTTATAT
* *
5826 -TATATAA
1 ATTTATAT
5833 ATTT-TA-
1 ATTTATAT
* *
5839 ATATATTT
1 ATTTATAT
5847 ATTT-TAT
1 ATTTATAT
5854 ATTTATAT
1 ATTTATAT
5862 TATATTTATC
Statistics
Matches: 89, Mismatches: 12, Indels: 31
0.67 0.09 0.23
Matches are distributed among these distances:
6 3 0.03
7 22 0.25
8 26 0.29
9 13 0.15
10 15 0.17
11 6 0.07
12 4 0.04
ACGTcount: A:0.42, C:0.01, G:0.00, T:0.58
Consensus pattern (8 bp):
ATTTATAT
Found at i:5774 original size:6 final size:7
Alignment explanation
Indices: 5758--5870 Score: 74
Period size: 6 Copynumber: 17.6 Consensus size: 7
5748 TTATAAATTT
5758 TTATATA
1 TTATATA
5765 TTAT-TA
1 TTATATA
5771 TTATAT-
1 TTATATA
5777 TTATAATA
1 TTAT-ATA
5785 TTATATA
1 TTATATA
5792 TT-TATA
1 TTATATA
*
5798 -TAAATA
1 TTATATA
5804 TTAATATA
1 TT-ATATA
5812 TTA-ATAA
1 TTATAT-A
5819 TT-TATA
1 TTATATA
5825 TTATATA
1 TTATATA
*
5832 --A-ATT
1 TTATATA
5836 TTAATATA
1 TT-ATATA
5844 TT-TAT-
1 TTATATA
5849 TT-TATA
1 TTATATA
5855 TT-TATA
1 TTATATA
5861 TTATAT-
1 TTATATA
5867 TTAT
1 TTAT
5871 CTCACAATTA
Statistics
Matches: 87, Mismatches: 4, Indels: 31
0.71 0.03 0.25
Matches are distributed among these distances:
4 2 0.02
5 7 0.08
6 37 0.43
7 27 0.31
8 14 0.16
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
TTATATA
Found at i:5834 original size:32 final size:33
Alignment explanation
Indices: 5757--5861 Score: 110
Period size: 32 Copynumber: 3.2 Consensus size: 33
5747 TTTATAAATT
* * *
5757 TTTATAT-ATTATTATTATATTTATAATATTATATA
1 TTTATATAAATATTAATATATTAAT-A-ATT-TATA
5792 TTTATATAAATATTAATATATTAATAATTTATA
1 TTTATATAAATATTAATATATTAATAATTTATA
* *
5825 -TTATATAAATTTTAATATATT--TATTTTATA
1 TTTATATAAATATTAATATATTAATAATTTATA
5855 TTTATAT
1 TTTATAT
5862 TATATTTATC
Statistics
Matches: 63, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
30 8 0.13
31 6 0.10
32 20 0.32
33 4 0.06
34 3 0.05
35 8 0.13
36 14 0.22
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (33 bp):
TTTATATAAATATTAATATATTAATAATTTATA
Found at i:5865 original size:36 final size:33
Alignment explanation
Indices: 5799--5866 Score: 84
Period size: 36 Copynumber: 2.0 Consensus size: 33
5789 ATATTTATAT
5799 AAATATTAATATATTAATA-ATTTATATTATAT
1 AAATATTAATATATTAATATATTTATATTATAT
* *
5831 AAATTTTAATATATTTATTTTATATTTATATTATAT
1 AAATATTAATATA-TTA--ATATATTTATATTATAT
5867 TTATCTCACA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
32 12 0.40
33 3 0.10
35 2 0.07
36 13 0.43
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (33 bp):
AAATATTAATATATTAATATATTTATATTATAT
Found at i:5868 original size:11 final size:11
Alignment explanation
Indices: 5758--5870 Score: 65
Period size: 11 Copynumber: 9.9 Consensus size: 11
5748 TTATAAATTT
5758 TTATATATTATTA
1 TTATAT-TTA-TA
5771 TTATATTTATA
1 TTATATTTATA
5782 --ATATTATATA
1 TTATATT-TATA
**
5792 TTTATATAAATA
1 -TTATATTTATA
5804 TTA-A--TATA
1 TTATATTTATA
5812 TTAATAATTTATA
1 TT-AT-ATTTATA
*
5825 TTATATAAATTTTA
1 TTATAT---TTATA
* *
5839 ATATATTTATT
1 TTATATTTATA
5850 TTATATTTATA
1 TTATATTTATA
5861 TTATATTTAT
1 TTATATTTAT
5871 CTCACAATTA
Statistics
Matches: 79, Mismatches: 9, Indels: 26
0.69 0.08 0.23
Matches are distributed among these distances:
8 5 0.06
9 6 0.08
10 5 0.06
11 30 0.38
12 8 0.10
13 16 0.20
14 9 0.11
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (11 bp):
TTATATTTATA
Found at i:6188 original size:25 final size:27
Alignment explanation
Indices: 6159--6218 Score: 74
Period size: 25 Copynumber: 2.4 Consensus size: 27
6149 TTTCATTTTT
*
6159 AATTATTTAATTT-ATTTAA-AAATTA
1 AATTATTTAATTTGATTAAATAAATTA
*
6184 AATTATTT-ATTTGATTAAATAAATTT
1 AATTATTTAATTTGATTAAATAAATTA
6210 AATT-TTTAA
1 AATTATTTAA
6219 ATATTTCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 4 0.13
25 16 0.53
26 10 0.33
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (27 bp):
AATTATTTAATTTGATTAAATAAATTA
Found at i:9711 original size:65 final size:66
Alignment explanation
Indices: 9590--9744 Score: 208
Period size: 65 Copynumber: 2.3 Consensus size: 66
9580 CTACTTGGGC
*
9590 AGAGTGGATCATCACTGACGTGCTATGGCAGAGGCCAAAGGGTGGGTTGTGAATTGTG-TAAGAG
1 AGAGTGGATCATCACTGACGTGC-ATGGCAGACGCCAAAGGGTGGGTTGTGAATTGTGAT-AGAG
9654 GCG
64 GCG
* * *
9657 AGAGTGGATCATCACTGACGTGC-TGGCAGACGCCGAATGGTGGGTTGTGAATTGTGATAGAGGG
1 AGAGTGGATCATCACTGACGTGCATGGCAGACGCCAAAGGGTGGGTTGTGAATTGTGATAGAGGC
9721 G
66 G
* *
9722 AGGGTGGAACATGC-CTGACGTGC
1 AGAGTGGATCAT-CACTGACGTGC
9745 CAGTTGCCTG
Statistics
Matches: 80, Mismatches: 6, Indels: 6
0.87 0.07 0.07
Matches are distributed among these distances:
65 55 0.69
66 2 0.03
67 23 0.29
ACGTcount: A:0.24, C:0.15, G:0.39, T:0.22
Consensus pattern (66 bp):
AGAGTGGATCATCACTGACGTGCATGGCAGACGCCAAAGGGTGGGTTGTGAATTGTGATAGAGGC
G
Found at i:10321 original size:20 final size:20
Alignment explanation
Indices: 10296--10334 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10286 AAACTCTTTA
* *
10296 TTTATATGATAGTGATATTC
1 TTTATATCATAGTAATATTC
10316 TTTATATCATAGTAATATT
1 TTTATATCATAGTAATATT
10335 TTTTGTTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.05, G:0.10, T:0.51
Consensus pattern (20 bp):
TTTATATCATAGTAATATTC
Found at i:11571 original size:19 final size:19
Alignment explanation
Indices: 11539--11582 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
11529 ACTTCTTTAG
* *
11539 AAAATTATTGTTCTCTTAA
1 AAAATTACTATTCTCTTAA
*
11558 AAAATTACTATTCTGTTAA
1 AAAATTACTATTCTCTTAA
11577 ATAAAT
1 A-AAAT
11583 AATATTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 17 0.81
20 4 0.19
ACGTcount: A:0.43, C:0.09, G:0.05, T:0.43
Consensus pattern (19 bp):
AAAATTACTATTCTCTTAA
Found at i:12178 original size:2 final size:2
Alignment explanation
Indices: 12171--12202 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
12161 GCATGCATAC
*
12171 AT AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12203 GCCATCAAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:13458 original size:24 final size:26
Alignment explanation
Indices: 13427--13481 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
13417 AACTTATTCC
*
13427 TTTTTTTG-AATTTT-TATTTTTGAT
1 TTTTTTTGTAATTTTGTATTTTTCAT
*
13451 TTTTTTTGTATTTTTGTATTTTTCAT
1 TTTTTTTGTAATTTTGTATTTTTCAT
13477 TTTTT
1 TTTTT
13482 CAAAAATAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
24 8 0.30
25 5 0.19
26 14 0.52
ACGTcount: A:0.13, C:0.02, G:0.07, T:0.78
Consensus pattern (26 bp):
TTTTTTTGTAATTTTGTATTTTTCAT
Found at i:13464 original size:18 final size:18
Alignment explanation
Indices: 13437--13473 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
13427 TTTTTTTGAA
13437 TTTTTATTTTTG-ATTTT
1 TTTTTATTTTTGTATTTT
13454 TTTTGTATTTTTGTATTTT
1 TTTT-TATTTTTGTATTTT
13473 T
1 T
13474 CATTTTTTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.22
18 8 0.44
19 6 0.33
ACGTcount: A:0.11, C:0.00, G:0.08, T:0.81
Consensus pattern (18 bp):
TTTTTATTTTTGTATTTT
Found at i:13658 original size:9 final size:8
Alignment explanation
Indices: 13617--13680 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 8
13607 ATAAAATAAG
13617 ATGCAT-A
1 ATGCATGA
*
13624 ATGCACGA
1 ATGCATGA
*
13632 ATGGCATGT
1 AT-GCATGA
13641 ATGCATGA
1 ATGCATGA
13649 ATGTCATGA
1 ATG-CATGA
* *
13658 AGGCATGC
1 ATGCATGA
13666 ATGCTATGA
1 ATGC-ATGA
13675 A-GCATG
1 ATGCATG
13681 TTATGAGTAT
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
7 8 0.18
8 20 0.44
9 17 0.38
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.25
Consensus pattern (8 bp):
ATGCATGA
Found at i:13662 original size:25 final size:25
Alignment explanation
Indices: 13617--13675 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
13607 ATAAAATAAG
*
13617 ATGCAT-AATGCACGAATGGCATGT
1 ATGCATGAATGCACGAATGGCATGC
*
13641 ATGCATGAATGTCATGAA-GGCATGC
1 ATGCATGAATG-CACGAATGGCATGC
13666 ATGCTATGAA
1 ATGC-ATGAA
13676 GCATGTTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 6 0.20
25 14 0.47
26 10 0.33
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.25
Consensus pattern (25 bp):
ATGCATGAATGCACGAATGGCATGC
Found at i:14812 original size:10 final size:11
Alignment explanation
Indices: 14802--14834 Score: 50
Period size: 11 Copynumber: 3.0 Consensus size: 11
14792 AAATAAAATT
14802 AAATATGATTA
1 AAATATGATTA
14813 AAATAT-AGTTA
1 AAATATGA-TTA
14824 AAATATGATTA
1 AAATATGATTA
14835 TATTTTAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
10 1 0.05
11 18 0.90
12 1 0.05
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (11 bp):
AAATATGATTA
Found at i:14932 original size:25 final size:23
Alignment explanation
Indices: 14904--14949 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
14894 ATCAATAACA
*
14904 AATAATTTAATTTTAATAAATTTTT
1 AATAATTAAATTTT--TAAATTTTT
14929 AATAATTAAATTTTTAAATTT
1 AATAATTAAATTTTTAAATTT
14950 AAAAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 7 0.35
25 13 0.65
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
AATAATTAAATTTTTAAATTTTT
Found at i:14949 original size:33 final size:34
Alignment explanation
Indices: 14903--14987 Score: 88
Period size: 33 Copynumber: 2.6 Consensus size: 34
14893 AATCAATAAC
*
14903 AAATAATTT-AATTTTAATAAAT-TTTTAATAATT
1 AAAT-ATTTAAATTTTAATAAATATTTTAAAAATT
*
14936 AAATTTTTAAA-TTTAA-AAATAATTTTAAAAATT
1 AAATATTTAAATTTTAATAAAT-ATTTTAAAAATT
* *
14969 AAATATTTACATATTAATA
1 AAATATTTAAATTTTAATA
14988 TTTAATTAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
31 4 0.10
32 8 0.19
33 25 0.60
34 4 0.10
35 1 0.02
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.47
Consensus pattern (34 bp):
AAATATTTAAATTTTAATAAATATTTTAAAAATT
Found at i:17473 original size:22 final size:22
Alignment explanation
Indices: 17418--17476 Score: 84
Period size: 22 Copynumber: 2.7 Consensus size: 22
17408 ACTCAAATAT
17418 TTTCTTTTTTTTTCTTTTTCCA
1 TTTCTTTTTTTTTCTTTTTCCA
* *
17440 CTTCTTTCTTTTTCTTTTTCC-
1 TTTCTTTTTTTTTCTTTTTCCA
*
17461 TTTCTTCTTTTTTCTT
1 TTTCTTTTTTTTTCTT
17477 CACCCCAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
21 13 0.41
22 19 0.59
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (22 bp):
TTTCTTTTTTTTTCTTTTTCCA
Found at i:17893 original size:13 final size:13
Alignment explanation
Indices: 17849--17898 Score: 57
Period size: 14 Copynumber: 3.6 Consensus size: 13
17839 TTTTAAACTC
17849 TTTTTTTCTTCTCT
1 TTTTTTTCTT-TCT
17863 TTTTTTTCGATTT-T
1 TTTTTTTC--TTTCT
17877 TTTTCTTTCTTTCT
1 TTTT-TTTCTTTCT
17891 TTTTTTTC
1 TTTTTTTC
17899 ATAACTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 9
0.78 0.00 0.22
Matches are distributed among these distances:
13 7 0.22
14 18 0.56
15 5 0.16
16 2 0.06
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.80
Consensus pattern (13 bp):
TTTTTTTCTTTCT
Found at i:17907 original size:28 final size:28
Alignment explanation
Indices: 17833--17911 Score: 83
Period size: 28 Copynumber: 2.8 Consensus size: 28
17823 GGAAAACTTA
*
17833 CTTTTTTTTTA-AACTCTTTTTTTCTTCT
1 CTTTTTTTTCATAACT-TTTTTTTCTTCT
**
17861 CTTTTTTTTCGAT-TTTTTTTCTTTCTT-T
1 CTTTTTTTTC-ATAACTTTTT-TTTCTTCT
17889 CTTTTTTTTCATAACTTTTTTTT
1 CTTTTTTTTCATAACTTTTTTTT
17912 ATTTTTCATT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
27 5 0.12
28 29 0.69
29 8 0.19
ACGTcount: A:0.09, C:0.15, G:0.01, T:0.75
Consensus pattern (28 bp):
CTTTTTTTTCATAACTTTTTTTTCTTCT
Found at i:18863 original size:19 final size:20
Alignment explanation
Indices: 18832--18872 Score: 66
Period size: 19 Copynumber: 2.1 Consensus size: 20
18822 GTATAACAAT
18832 TATAAAAATAAAAATATTAA
1 TATAAAAATAAAAATATTAA
*
18852 TATAAAAA-AAAAATTTTAA
1 TATAAAAATAAAAATATTAA
18871 TA
1 TA
18873 ATATAATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (20 bp):
TATAAAAATAAAAATATTAA
Found at i:19174 original size:32 final size:33
Alignment explanation
Indices: 19123--19200 Score: 88
Period size: 32 Copynumber: 2.4 Consensus size: 33
19113 TAATAGGGCA
* * *
19123 AGTTCCCCGTGGA-ATCGCCAAACCATTTGGTG
1 AGTTCCACGTGGACATCGCCAAACCATTAGGCG
* *
19155 ATTTCCACGTGGACA-CGCCAAAGCATTAGGCG
1 AGTTCCACGTGGACATCGCCAAACCATTAGGCG
*
19187 AGTTCCATGTGGAC
1 AGTTCCACGTGGAC
19201 TCACGTTCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
32 37 0.97
33 1 0.03
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23
Consensus pattern (33 bp):
AGTTCCACGTGGACATCGCCAAACCATTAGGCG
Found at i:20780 original size:2 final size:2
Alignment explanation
Indices: 20773--20819 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
20763 TATACATGAA
20773 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
20815 AT AT A
1 AT AT A
20820 AAGCATATAG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:21151 original size:24 final size:24
Alignment explanation
Indices: 21124--21245 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
21114 GTTGATTTCG
* *
21124 TTATATCAATTATTTCTTTATATT
1 TTATAACAATTATTTATTTATATT
***
21148 TTATTGTAATTATTTATTTATATT
1 TTATAACAATTATTTATTTATATT
* *
21172 TTATAACAATTGTTTCTTTATATT
1 TTATAACAATTATTTATTTATATT
*
21196 TTATAACAATTATTTTTTTATATT
1 TTATAACAATTATTTATTTATATT
*
21220 TTATAACAATTTTTTTATTTATATT
1 TTATAACAA-TTATTTATTTATATT
21245 T
1 T
21246 AACTTTTTTG
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
24 70 0.83
25 14 0.17
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATAACAATTATTTATTTATATT
Found at i:22018 original size:13 final size:13
Alignment explanation
Indices: 22002--22026 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21992 TTCGACAATT
22002 TGTATCGATACAA
1 TGTATCGATACAA
22015 TGTATCGATACA
1 TGTATCGATACA
22027 TAAGTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:22115 original size:13 final size:13
Alignment explanation
Indices: 22097--22123 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22087 CATTACTCAA
22097 TGTATCGATACAT
1 TGTATCGATACAT
22110 TGTATCGATACAT
1 TGTATCGATACAT
22123 T
1 T
22124 TGATCTTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:28011 original size:20 final size:20
Alignment explanation
Indices: 27986--28067 Score: 74
Period size: 20 Copynumber: 3.6 Consensus size: 20
27976 TACCCAGATA
27986 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
28006 TATCGATACATTCTGTCTTTTACCCAGATG
1 TATCGATACA-----T-TTTT---CA-ATG
28036 TATCGATACATTTTTCAATG
1 TATCGATACATTTTTCAATG
28056 TATCGATACATT
1 TATCGATACATT
28068 CTTGTATCGA
Statistics
Matches: 52, Mismatches: 0, Indels: 20
0.72 0.00 0.28
Matches are distributed among these distances:
20 25 0.48
21 2 0.04
24 4 0.08
25 2 0.04
26 4 0.08
29 2 0.04
30 13 0.25
ACGTcount: A:0.28, C:0.18, G:0.11, T:0.43
Consensus pattern (20 bp):
TATCGATACATTTTTCAATG
Found at i:28048 original size:50 final size:50
Alignment explanation
Indices: 27973--28069 Score: 185
Period size: 50 Copynumber: 1.9 Consensus size: 50
27963 AAAGTCACAT
27973 TTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCTGTC
1 TTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCTGTC
*
28023 TTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTCT
1 TTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCT
28070 TGTATCGATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (50 bp):
TTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTCTGTC
Found at i:28075 original size:16 final size:16
Alignment explanation
Indices: 28054--28085 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
28044 CATTTTTCAA
28054 TGTATCGATACATTCT
1 TGTATCGATACATTCT
28070 TGTATCGATACATTCT
1 TGTATCGATACATTCT
28086 GTCTTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.12, T:0.44
Consensus pattern (16 bp):
TGTATCGATACATTCT
Found at i:28116 original size:67 final size:66
Alignment explanation
Indices: 28004--28134 Score: 226
Period size: 67 Copynumber: 2.0 Consensus size: 66
27994 CATTTTTCAA
*
28004 TGTATCGATACATTCTGTCTTTTACCCAGATGTATCGATACATTTTTCAATGTATCGATACATTC
1 TGTATCGATACATTCTGTCTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTC
28069 T
66 T
* *
28070 TGTATCGATACATTCTGTCTTTTTATCCAGATATATCGATATATTTTTCAATGTATCGATACATT
1 TGTATCGATACATTCTGTC-TTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATT
28135 TAGTTAAAAT
Statistics
Matches: 61, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
66 19 0.31
67 42 0.69
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (66 bp):
TGTATCGATACATTCTGTCTTTTACCCAGATATATCGATACATTTTTCAATGTATCGATACATTC
T
Found at i:31774 original size:13 final size:13
Alignment explanation
Indices: 31756--31781 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
31746 ATTTGTAGAA
31756 TGTATCGATACAT
1 TGTATCGATACAT
31769 TGTATCGATACAT
1 TGTATCGATACAT
31782 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:34233 original size:52 final size:52
Alignment explanation
Indices: 34135--34246 Score: 145
Period size: 52 Copynumber: 2.2 Consensus size: 52
34125 GCTTTCTGCA
* * * **
34135 ACTCTAACTCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGAT
1 ACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCTACAATCGGGGAT
*
34187 ACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTTC-ACAATCGGGGAT
1 ACTCCAACTCCGATTTTATTTCC-AAAACACCAATTTTCCTACAATCGGGGAT
*
34239 ACCCCAAC
1 ACTCCAAC
34247 CCCGTTAATC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
52 37 0.71
53 15 0.29
ACGTcount: A:0.30, C:0.28, G:0.10, T:0.32
Consensus pattern (52 bp):
ACTCCAACTCCGATTTTATTTCCAAAACACCAATTTTCCTACAATCGGGGAT
Found at i:34298 original size:27 final size:27
Alignment explanation
Indices: 34230--34303 Score: 78
Period size: 27 Copynumber: 2.7 Consensus size: 27
34220 ATTTTTCACA
* *
34230 ATCGGGGATACCCCAACCCCGTTAATC
1 ATCGGGGGTACTCCAACCCCGTTAATC
* * *
34257 ATCGGGGATAATCCAACCCCGTT-ATT
1 ATCGGGGGTACTCCAACCCCGTTAATC
*
34283 TTCGAGGGGTACTCCAACCCC
1 ATCG-GGGGTACTCCAACCCC
34304 CGGTTTTATT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
26 5 0.12
27 35 0.88
ACGTcount: A:0.24, C:0.34, G:0.20, T:0.22
Consensus pattern (27 bp):
ATCGGGGGTACTCCAACCCCGTTAATC
Found at i:34340 original size:79 final size:79
Alignment explanation
Indices: 34257--34431 Score: 262
Period size: 79 Copynumber: 2.2 Consensus size: 79
34247 CCCGTTAATC
*
34257 ATCGGGGATAATCCAACCCCGTTATTTTCGAGGGG-TACTCCAACCCCCGGTTTTATTTCTAAAA
1 ATCGGGGATAATCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCCGATTTTATTTCTAAAA
* * * *
34321 CATCAATTTTTCATA
65 CACCAATTCTCCACA
* *
34336 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCGAACCCCGATTTTATTTCTAAAAC
1 ATCGGGGATAATCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAAC
34401 ACCAATTCTCCACA
66 ACCAATTCTCCACA
*
34415 ATCGGGGATATTCCAAC
1 ATCGGGGATAATCCAAC
34432 TCCGATTTTA
Statistics
Matches: 87, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
79 80 0.92
80 7 0.08
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.30
Consensus pattern (79 bp):
ATCGGGGATAATCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGATTTTATTTCTAAAAC
ACCAATTCTCCACA
Found at i:34443 original size:51 final size:51
Alignment explanation
Indices: 34367--34484 Score: 157
Period size: 51 Copynumber: 2.3 Consensus size: 51
34357 TTATTTTCGA
*
34367 GGGGATACTCGAACCCCGATTTTA-TTTCTAAAACACCAATTCTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTCTCCACAATC
* * * * * *
34418 GGGGATATTCCAACTCCGATTTTATTTTCAAAACACTAATTTTTCACAATT
1 GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAATC
34469 GGGGATACTCCAACCC
1 GGGGATACTCCAACCC
34485 TATTATTTCA
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
51 53 0.93
52 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.31
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTCTCCACAATC
Found at i:34542 original size:28 final size:28
Alignment explanation
Indices: 34469--34542 Score: 94
Period size: 28 Copynumber: 2.6 Consensus size: 28
34459 TTTCACAATT
** **
34469 GGGGATACTCCAACCCTATTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCAGA
* *
34497 GGGTATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCAGA
34525 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
34543 GCTTTATATC
Statistics
Matches: 39, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCAGA
Found at i:34606 original size:108 final size:109
Alignment explanation
Indices: 34460--34697 Score: 311
Period size: 108 Copynumber: 2.2 Consensus size: 109
34450 ACACTAATTT
* * * *
34460 TTCACAATTGGGGATACTCCAACCCTATTATTTCATCGGGTATACTCCAACCCCGTTATTTCCGA
1 TTCACAATCGGGGATACTCCAACCCCATTATTCCATCGGGGATACTCCAACCCCGTTATTTCCGA
* *
34525 GGGGATACTCCAACCCCGGCTTTATATCTAAAAATATTGTTTTC
66 AGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTTTTC
* * * *
34569 TTCATAATCGGGG-TACTCCAACCCCGTTATTCCATCGGGGATACTCCAATCTCGTTATTTCCGA
1 TTCACAATCGGGGATACTCCAACCCCATTATTCCATCGGGGATACTCCAACCCCGTTATTTCCGA
* * ****
34633 AGGGATACTCCAACCCCGATTTTATTTCT-AAAATACCAATTT-
66 AGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTTTTC
34675 TTCACAATCGGGGATACTCCAAC
1 TTCACAATCGGGGATACTCCAAC
34698 TCTGATTTTA
Statistics
Matches: 111, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 12 0.11
107 18 0.16
108 70 0.63
109 11 0.10
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (109 bp):
TTCACAATCGGGGATACTCCAACCCCATTATTCCATCGGGGATACTCCAACCCCGTTATTTCCGA
AGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTTTTC
Found at i:34616 original size:28 final size:30
Alignment explanation
Indices: 34575--34650 Score: 90
Period size: 28 Copynumber: 2.7 Consensus size: 30
34565 TTTCTTCATA
34575 ATCGGGG-TACTCCAACCCCGTTA-TTCC-
1 ATCGGGGATACTCCAACCCCGTTATTTCCG
* *
34602 ATCGGGGATACTCCAATCTCGTTATTTCCG
1 ATCGGGGATACTCCAACCCCGTTATTTCCG
*
34632 A--AGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCG
34651 ATTTTATTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
27 7 0.17
28 29 0.71
29 4 0.10
30 1 0.02
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (30 bp):
ATCGGGGATACTCCAACCCCGTTATTTCCG
Found at i:34697 original size:51 final size:51
Alignment explanation
Indices: 34634--34752 Score: 186
Period size: 51 Copynumber: 2.3 Consensus size: 51
34624 TATTTCCGAA
* *
34634 GGGATACTCCAACCCCGATTTTA-TTTCTAAAATACCAATTTTTCACAATCG
1 GGGATACTCCAACCCCGATTTTATTTTC-AAAACACCAATTTCTCACAATCG
* *
34685 GGGATACTCCAACTCTGATTTTATTTTCAAAACACCAATTTCTCACAATCG
1 GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCTCACAATCG
34736 GGGATACTCCAACCCCG
1 GGGATACTCCAACCCCG
34753 TTATTTTCGC
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 57 0.93
52 4 0.07
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.30
Consensus pattern (51 bp):
GGGATACTCCAACCCCGATTTTATTTTCAAAACACCAATTTCTCACAATCG
Found at i:34864 original size:79 final size:79
Alignment explanation
Indices: 34684--34903 Score: 259
Period size: 79 Copynumber: 2.8 Consensus size: 79
34674 TTTCACAATC
* * *
34684 GGGGATACTCCAACTCTGATTTTATTTTCAAAACACC-AATTTCTCACAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCGATTTTCTCATAATC-GGGATACTCCAA
* * *
34748 CCCCGTTATTTTCGC
65 CCCCATTATTCTCGA
*
34763 GGGGATACTCTAACCCTGATTTTATTTTCAAAACACCGATTTTCT-ATAATCAGGGATACTCCAA
1 GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCGATTTTCTCATAATC-GGGATACTCCAA
*
34827 CCCTATTATTCTCGA
65 CCCCATTATTCTCGA
* ** *
34842 GGGGATGCTCCAACCCCAATTTT-TATTTCTAGAACACCGATTTT-TCATAATCGGAGATACTC
1 GGGGATACTCCAACCCTGATTTTAT-TTTC-AAAACACCGATTTTCTCATAATCGG-GATACTC
34904 TAGTCCAGTT
Statistics
Matches: 122, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 1 0.01
79 89 0.73
80 32 0.26
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (79 bp):
GGGGATACTCCAACCCTGATTTTATTTTCAAAACACCGATTTTCTCATAATCGGGATACTCCAAC
CCCATTATTCTCGA
Found at i:38454 original size:4 final size:4
Alignment explanation
Indices: 38445--38485 Score: 73
Period size: 4 Copynumber: 10.2 Consensus size: 4
38435 TATTTTGAGG
*
38445 TATT TATT TATT TATT TATT TATT TATT TATT GATT TATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT T
38486 GTTTTGTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:42830 original size:55 final size:55
Alignment explanation
Indices: 42760--43190 Score: 447
Period size: 55 Copynumber: 7.5 Consensus size: 55
42750 CTCCTTTCAC
*
42760 CCTTTCA-TCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * * *
42814 CCTTTCAATTCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* * **
42869 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTTAAAGCCCACATAAACTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
* *
42924 CCTTT-AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCATACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
* * * * ** *
42984 CTTTTCAGTCCTCAAAGAGCATGATGCTTTCTTTTTAAAGCCTACATTAGCTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGC---C-TTTCAAAGCCCACACAAGTTGGTGGCA
43043 CC-TTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGCCTT-T-C----AAAGCCCACACAAGTTGGTGGCA
*
43103 CTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 CCTTTCAGTCCTCAAAGAGCAGGATGC---C--TTT-CAAAGCCCACACAAGTTGGTGGCA
*
43164 -CTTCCTAGTCCTCAAAGAGCAGGATGC
1 CCTTTC-AGTCCTCAAAGAGCAGGATGC
43191 TCTCTCCTTT
Statistics
Matches: 316, Mismatches: 36, Indels: 43
0.80 0.09 0.11
Matches are distributed among these distances:
54 32 0.10
55 100 0.32
58 23 0.07
59 19 0.06
60 46 0.15
61 87 0.28
64 3 0.01
65 4 0.01
66 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (55 bp):
CCTTTCAGTCCTCAAAGAGCAGGATGCCTTTCAAAGCCCACACAAGTTGGTGGCA
Found at i:43120 original size:61 final size:60
Alignment explanation
Indices: 42762--43741 Score: 464
Period size: 61 Copynumber: 16.3 Consensus size: 60
42752 CCTTTCACCC
*
42762 TTTCA-TCCTCAAAGAGCAGGACGCCTTT-C----AAAGCCCACACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * * *
42816 TTTCAATTCTCAAAGAGCAAGACGCCTTT-C----AAAGCCCACACAAGTTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * ** *
42871 TTTCAGTCCTCAAAGAGCAGGA-----TGCCTTTTAAAGCCCACATAAACTGGTGGCACC
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
*
42926 TTT-AGTCCTCAAAGAGCAGGACGCCTTCTCCTTTTAAAGCCCATACAAGTTGGTGGCACT
1 TTTCAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * * * ** *
42986 TTTCAGTCCTCAAAGAGCATGATG-CTTTCTTTTTAAAGCCTACATTAGCTGGTGGCAC-
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
43044 CTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
1 TTTCAGTCCTCAAAGAGCAGGACGCCTT-TCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
43105 TTTCAGTCCTCAAAGAGCAGGATG-CTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCAC-
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTT--AAAGCCCACACAAGTTGGTGGCACT
* * * **
43165 TTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCGCCTTCTCCTTTTAAAGCC-CACACA--
1 TTTC-AGTCCTCAAAGAGCAGGA------CGCCTTT---C--CT--TTTAAAGCCCACACA-AGT
* * ** *
43227 AGTTGGTGGCAC
51 TGGTGG-CAC-T
* * * * * *
43239 TTT---TCAGTCCTCAA-AG-AGCAGGATGCTTTCTTTTTGCAAAGCCCACACAAGTTGGTGGCA
1 TTTCAGTC-CT-C-AAAGAGCAGGACG--CCTTTCCTTTT--AAAGCCCACACAAGTTGGTGGCA
43299 CT
59 CT
* * *
43301 TTTCAGTCCTCAAATAGCAGGATG-CTTTCTTTTTACAAAGCCCACACAAGTTGGTGGCAC-
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTT--AAAGCCCACACAAGTTGGTGGCACT
* * **
43361 TTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTCTCCTTTTAAAGCC-CACACA--
1 TTTC-AGTCCTCAAAGAGCAGGACG------CCTTT---C--CT--TTTAAAGCCCACACA-AGT
* * ** *
43423 AGTTGGTGGCAC
51 TGGTGG-CAC-T
* * * * * * * *
43435 TTT---TCAGTCCTCAA-AG-AGCAGGAC--GCCTTTCAAAGCCCACACGAGTTGGTGGCA-T
1 TTTCAGTC-CT-C-AAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* * * * * *
43490 TGTTTAGTCCTCAAAGAGCATGACACCTTTTCTTTTTAAAGCCTACACAAGTTGGTGGCATT
1 T-TTCAGTCCTCAAAGAGCAGGACGCC-TTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
43552 TTTCAATCCTCAAAGAGTAGGACGCC--T-C--TTAAAGCCCACACAAGTTGGTGGCA-T
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
43606 TTTCCAGTCCTCAAAGAGCAAGACGCCTTT-C----AAAGCCCACACAAGTTGGTGGCATT
1 TTT-CAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
* *
43662 TTTCAGTCCTCAAAAAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTT
1 TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTT-AAAGCCCACACAAGTTGGTGGCAC-T
43724 TTTCAGTCCTCAAAGAGC
1 TTTCAGTCCTCAAAGAGC
43742 GAGACACACT
Statistics
Matches: 709, Mismatches: 119, Indels: 188
0.70 0.12 0.19
Matches are distributed among these distances:
50 1 0.00
51 1 0.00
54 27 0.04
55 183 0.26
56 16 0.02
57 8 0.01
58 33 0.05
59 37 0.05
60 71 0.10
61 203 0.29
62 31 0.04
63 8 0.01
64 10 0.01
65 3 0.00
67 4 0.01
68 8 0.01
70 4 0.01
71 19 0.03
72 16 0.02
73 16 0.02
74 4 0.01
75 6 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (60 bp):
TTTCAGTCCTCAAAGAGCAGGACGCCTTTCCTTTTAAAGCCCACACAAGTTGGTGGCACT
Found at i:43309 original size:135 final size:130
Alignment explanation
Indices: 42840--43741 Score: 692
Period size: 135 Copynumber: 7.4 Consensus size: 130
42830 GAGCAAGACG
* *
42840 CCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGATGC---C-TTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
* ** *
42901 --AAAGCCCACATAAACTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGA------C--GCCTTCT
66 GCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCTTCT
* *
42955 CCTTTTAAAGCCCATACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCATGATGCTTTCTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
* ** * *
43020 --AAAGCCTACATTAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGA--------TGCCTTCT
66 GCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCTTCT
43074 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
*
43139 GCAAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCG
66 GCAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGATGCT-T-T-C-TT-G
43203 CCTTCT
125 CCTTCT
43209 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
*
43274 GCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAATAGCAGGATGCTTTCTT---TT-T
66 GCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCTTCT
* * *
43335 AC----AAAGCCCACACAAGTTGGTGGCAC-TTCCTAGTCCTCAAAGAGCAGGACGCTCTCTCCT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTC-AGTCCTCAAAGAGCAGGATGCT-T-T-C-
*
43395 TTCGCCTTCTCCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGA--
61 TT----TT-TGC----AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATG
43458 ----C--GCCTT-T
117 CTTTCTTGCCTTCT
* * * **
43465 -C----AAAGCCCACACGAGTTGGTGGCA-TTGTTTAGTCCTCAAAGAGCATGACACCTTTTCTT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTT-TTCAGTCCTCAAAGAGCAGGA-TGC-TTTCTT
* * * *
43524 TTT--AAAGCCTACACAAGTTGGTGGCATTTTTCAATCCTCAAAGAGTAGGA------C--G-C-
63 TTTGCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCT
43577 -CT
128 TCT
* *
43579 -C--TTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAAGACGC---C--TT
1 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGATGCTTTCTTTT
* *
43635 T-CAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGA------C--GCCTT-
65 TGCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCTTC
43690 T
130 T
*
43691 CCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGC
1 CCTTTT-AAAGCCCACACAAGTTGGTGGCAC-TTTTCAGTCCTCAAAGAGC
43742 GAGACACACT
Statistics
Matches: 686, Mismatches: 43, Indels: 114
0.81 0.05 0.14
Matches are distributed among these distances:
109 3 0.00
110 45 0.07
111 2 0.00
112 1 0.00
113 1 0.00
114 2 0.00
115 58 0.08
116 108 0.16
117 15 0.02
118 7 0.01
119 113 0.16
121 25 0.04
122 64 0.09
123 3 0.00
124 1 0.00
125 1 0.00
126 4 0.01
127 4 0.01
128 1 0.00
129 43 0.06
130 8 0.01
131 5 0.01
132 1 0.00
133 1 0.00
134 2 0.00
135 165 0.24
136 3 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (130 bp):
CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT
GCAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTGCCTTCT
Found at i:43349 original size:196 final size:189
Alignment explanation
Indices: 43016--43741 Score: 854
Period size: 196 Copynumber: 3.9 Consensus size: 189
43006 GATGCTTTCT
* ** * * *
43016 TTTTAAAGCCTACATTAGCTGGTGGCAC-CTTCAGTCCTCAAAGAGCAGGATGCCTTCTCCTTTT
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTT-T-C----
43080 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGCAAAG
60 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT-CAAAG
43145 CCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCAGGATGCTCTCTCCTTTCGCCTTCT
124 CCCACACAAGTTGGTGGCACTTCCTCAGTCCTCAAAGAGCAGGA-GCTCTCTCCTTTCGCCTTCT
43209 CC
188 CC
*
43211 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTGC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGC---C--TTT-C
*
43276 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAATAGCAGGATGCTTTCTTTTTACAAAG
60 AAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTT-CAAAG
43341 CCCACACAAGTTGGTGGCACTTCCT-AGTCCTCAAAGAGCAGGACGCTCTCTCCTTTCGCCTTCT
124 CCCACACAAGTTGGTGGCACTTCCTCAGTCCTCAAAGAGCAGGA-GCTCTCTCCTTTCGCCTTCT
43405 CC
188 CC
43407 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
* * * ** *
43472 CACACGAGTTGGTGGCA-TTGTTTAGTCCTCAAAGAGCATGACACCTTTTCTTTTT-AAAGCCTA
66 CACACAAGTTGGTGGCACTT-TTCAGTCCTCAAAGAGCAGGA-TGC-TTTCTTTTTCAAAGCCCA
** * *
43535 CACAAGTTGGTGGCA-TTTTTCAATCCTCAAAGAGTAGGA------------CG-C--CT-C
128 CACAAGTTGGTGGCACTTCCTCAGTCCTCAAAGAGCAGGAGCTCTCTCCTTTCGCCTTCTCC
*
43580 --TTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGC
1 TTTTAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGC
* * * *
43642 CCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGACGCCTTTCCTTTTCAAAGCCCAC
65 CCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATG-CTTTCTTTTTCAAAGCCCAC
* **
43707 ACGAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGC
129 ACAAGTTGGTGGCACTTCCTCAGTCCTCAAAGAGC
43742 GAGACACACT
Statistics
Matches: 483, Mismatches: 33, Indels: 53
0.85 0.06 0.09
Matches are distributed among these distances:
170 12 0.02
171 113 0.23
172 20 0.04
173 1 0.00
174 2 0.00
176 1 0.00
177 2 0.00
189 5 0.01
190 79 0.16
191 4 0.01
192 9 0.02
193 1 0.00
195 24 0.05
196 205 0.42
199 1 0.00
200 2 0.00
201 2 0.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (189 bp):
TTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCC
CACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGATGCTTTCTTTTTCAAAGCCCACAC
AAGTTGGTGGCACTTCCTCAGTCCTCAAAGAGCAGGAGCTCTCTCCTTTCGCCTTCTCC
Found at i:43499 original size:55 final size:55
Alignment explanation
Indices: 43405--43741 Score: 417
Period size: 55 Copynumber: 5.9 Consensus size: 55
43395 TTCGCCTTCT
* *
43405 CCTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG
* * *
43460 CCTTTCAAAGCCCACACGAGTTGGTGGCATTGTTT-AGTCCTCAAAGAGCATGACA
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATT-TTTCAGTCCTCAAAGAGCAGGACG
* * *
43515 CCTTTTCTTTTTAAAGCCTACACAAGTTGGTGGCATTTTTCAATCCTCAAAGAGTAGGACG
1 CC-TTTC-----AAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG
* *
43576 CCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACG
1 CCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG
*
43631 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGACG
1 CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG
*
43686 CCTTTCCTTTTCAAAGCCCACACGAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGC
1 -----CC-TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTTCAGTCCTCAAAGAGC
43742 GAGACACACT
Statistics
Matches: 244, Mismatches: 21, Indels: 27
0.84 0.07 0.09
Matches are distributed among these distances:
54 2 0.01
55 141 0.58
56 7 0.03
60 6 0.02
61 69 0.28
62 19 0.08
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.27
Consensus pattern (55 bp):
CCTTTCAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACG
Found at i:43553 original size:27 final size:27
Alignment explanation
Indices: 43523--43608 Score: 66
Period size: 27 Copynumber: 3.1 Consensus size: 27
43513 CACCTTTTCT
43523 TTTTAAAGCCTACACAAGTTGGTGGCA
1 TTTTAAAGCCTACACAAGTTGGTGGCA
* * * * ** *
43550 TTTTTCAATCCT-CAAAGAGTAGGACGCC
1 -TTTTAAAGCCTACACA-AGTTGGTGGCA
* *
43578 TCTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTAAAGCCTACACAAGTTGGTGGCA
43605 TTTT
1 TTTT
43609 CCAGTCCTCA
Statistics
Matches: 39, Mismatches: 17, Indels: 5
0.64 0.28 0.08
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (27 bp):
TTTTAAAGCCTACACAAGTTGGTGGCA
Found at i:43553 original size:28 final size:28
Alignment explanation
Indices: 43522--43608 Score: 70
Period size: 28 Copynumber: 3.1 Consensus size: 28
43512 ACACCTTTTC
43522 TTTTTAAAGCCTACACAAGTTGGTGGCA
1 TTTTTAAAGCCTACACAAGTTGGTGGCA
* * * * **
43550 TTTTTCAATCCT-CAAAGAGTAGGACGC-
1 TTTTTAAAGCCTACACA-AGTTGGTGGCA
* * *
43577 CTCTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTTAAAGCCTACACAAGTTGGTGGCA
43605 TTTT
1 TTTT
43609 CCAGTCCTCA
Statistics
Matches: 39, Mismatches: 17, Indels: 6
0.63 0.27 0.10
Matches are distributed among these distances:
27 17 0.44
28 22 0.56
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (28 bp):
TTTTTAAAGCCTACACAAGTTGGTGGCA
Found at i:43615 original size:116 final size:114
Alignment explanation
Indices: 43406--43748 Score: 455
Period size: 116 Copynumber: 3.0 Consensus size: 114
43396 TCGCCTTCTC
*
43406 CTTTTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAG
1 CTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTCTTCAAAG
* *
43470 CCCACACGAGTTGGTGGCATTGTTTAGTCCTCAAAGAGCATGACACCTTTT
66 CCCACACGAGTTGGTGGCATT-TTCAGTCCTCAAAGAGCAAGACACC-TTT
* * *
43521 CTTTTTAAAGCCTACACAAGTTGGTGGCATTTTTCAATCCTCAAAGAGTAGGACGCCTCTT-AAA
1 C-TTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTCTTCAAA
* *
43585 GCCCACACAAGTTGGTGGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTTT
65 GCCCACACGAGTTGGTGGCATTTT-CAGTCCTCAAAGAGCAAGACACCTTT
*
43636 C----AAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAAAGCAGGACGCCTTTCCTTTT
1 CTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCC--T-C--TT
*
43697 CAAAGCCCACACGAGTTGGTGGCACTTTTTCAGTCCTCAAAGAGCGAGACAC
61 CAAAGCCCACACGAGTTGGTGGCA--TTTTCAGTCCTCAAAGAGCAAGACAC
43749 ACTTCCTTCC
Statistics
Matches: 202, Mismatches: 15, Indels: 20
0.85 0.06 0.08
Matches are distributed among these distances:
110 47 0.23
112 1 0.00
113 1 0.00
115 9 0.04
116 118 0.58
117 22 0.11
118 4 0.02
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.26
Consensus pattern (114 bp):
CTTTTAAAGCCCACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGACGCCTCTTCAAAG
CCCACACGAGTTGGTGGCATTTTCAGTCCTCAAAGAGCAAGACACCTTT
Found at i:43716 original size:171 final size:172
Alignment explanation
Indices: 43409--43740 Score: 535
Period size: 171 Copynumber: 1.9 Consensus size: 172
43399 CCTTCTCCTT
*
43409 TTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCA
1 TTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCA
* * * * * *
43474 CACGAGTTGGTGGCATTGTTTAGTCCTCAAAGAGCATGACACCTTTTCTTTTTAAAGCCTACACA
66 CACAAGTTGGTGGCATTGTTTAGTCCTCAAAAAGCAGGACACCTTTCCTTTTCAAAGCCCACACA
43539 AGTTGGTGGCA-TTTTTCAATCCTCAAAGAGTAGGACGCCTC
131 AGTTGGTGGCACTTTTTCAATCCTCAAAGAGTAGGACGCCTC
43580 TTAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCC
1 TTAAAGCCCACACAAGTTGGTGGCACTTTT-CAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCC
*
43644 ACACAAGTTGGTGGCATT-TTTCAGTCCTCAAAAAGCAGGACGCCTTTCCTTTTCAAAGCCCACA
65 ACACAAGTTGGTGGCATTGTTT-AGTCCTCAAAAAGCAGGACACCTTTCCTTTTCAAAGCCCACA
* *
43708 CGAGTTGGTGGCACTTTTTCAGTCCTCAAAGAG
129 CAAGTTGGTGGCACTTTTTCAATCCTCAAAGAG
43741 CGAGACACAC
Statistics
Matches: 148, Mismatches: 10, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
170 7 0.05
171 123 0.83
172 18 0.12
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.27
Consensus pattern (172 bp):
TTAAAGCCCACACAAGTTGGTGGCACTTTTCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCA
CACAAGTTGGTGGCATTGTTTAGTCCTCAAAAAGCAGGACACCTTTCCTTTTCAAAGCCCACACA
AGTTGGTGGCACTTTTTCAATCCTCAAAGAGTAGGACGCCTC
Found at i:43832 original size:42 final size:41
Alignment explanation
Indices: 43759--43905 Score: 117
Period size: 42 Copynumber: 3.5 Consensus size: 41
43749 ACTTCCTTCC
*
43759 TTTCTTTTCTCTTTTGTCCTCAA-AGAGCAGGATGCACTTT-AT
1 TTTCTTTT-TCTTTTGTCCTCAAGAGAACAGGA--CACTTTCAT
* *
43801 TTTCCTTTTTCTTTTCTCCTCAAGA-AACAGGACACTTTCCT
1 TTT-CTTTTTCTTTTGTCCTCAAGAGAACAGGACACTTTCAT
* *
43842 TTTCTTCTCTTCTTTTGTCCTCAAG-GAGCAAGAC-CTATTTCAT
1 TTTCTT-T-TTCTTTTGTCCTCAAGAGAACAGGACAC--TTTCAT
* *
43885 TCT-TTTTTCCTTTGTCCTCAA
1 TTTCTTTTTCTTTTGTCCTCAA
43906 AAAGTGGGAC
Statistics
Matches: 88, Mismatches: 9, Indels: 18
0.77 0.08 0.16
Matches are distributed among these distances:
40 23 0.26
41 7 0.08
42 45 0.51
43 13 0.15
ACGTcount: A:0.18, C:0.26, G:0.10, T:0.46
Consensus pattern (41 bp):
TTTCTTTTTCTTTTGTCCTCAAGAGAACAGGACACTTTCAT
Found at i:44435 original size:61 final size:59
Alignment explanation
Indices: 44335--44701 Score: 398
Period size: 61 Copynumber: 6.3 Consensus size: 59
44325 ATGTGGGGAC
* * *
44335 GCTCTTTGAGGACT-AGGAAGTGCCACCAACTTGTTTGGGCTTTGCAAAAAGAAAGCATCCT
1 GCTCTTTGAGGACTGA-AAAGTGCCACCAACTTGTGTGGGCTTT--AAAAAGAAAGCGTCCT
* * *
44396 GTTCTTTGAGGACTGAAAAGTGACACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
1 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA--AGAAAGCGTCCT
* * * * * *
44457 GCTCTTTGAGGACTG-AAGGTGCCACCAGCTTATATGGGCTTTAAAAAGAAAGCATCTT
1 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCGTCCT
* * * *
44515 GCTCTTTGAGGAGTGAAAAGTGCCACTAACTTGTATGGGCTTTAAAAGGAGAAGGCGTCCT
1 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA--AGAAAGCGTCCT
* * *
44576 GCTCTTTGAGGACT-AAAGGTGCCACCAGCTTATGTGGGCTTT-AAAAG---GCGTCCT
1 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCGTCCT
* *
44630 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-GAAAG---GCGTCCT
1 GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCGTCCT
44685 GCTCTTTGAGGA-TGAAA
1 GCTCTTTGAGGACTGAAA
44702 GGGTGAAAGG
Statistics
Matches: 267, Mismatches: 32, Indels: 21
0.83 0.10 0.07
Matches are distributed among these distances:
54 26 0.10
55 49 0.18
57 2 0.01
58 23 0.09
59 34 0.13
60 49 0.18
61 83 0.31
62 1 0.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (59 bp):
GCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAAGAAAGCGTCCT
Found at i:44567 original size:119 final size:119
Alignment explanation
Indices: 44335--44700 Score: 495
Period size: 119 Copynumber: 3.1 Consensus size: 119
44325 ATGTGGGGAC
* * * *
44335 GCTCTTTGAGGACTAGGAA-GTGCCACCAACTTGTTTGGGCTTTGCAAAAAGAAAGCATCCTGTT
1 GCTCTTTGAGGACT--GAAGGTGCCACCAGCTTATATGGGCTTT--AAAAAGAAAGCATCCTGCT
*
44399 CTTTGAGGACTGAAAAGTGACACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
62 CTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
*
44457 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATATGGGCTTTAAAAAGAAAGCATCTTGCTCTTT
1 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATATGGGCTTTAAAAAGAAAGCATCCTGCTCTTT
* * *
44522 GAGGAGTGAAAAGTGCCACTAACTTGTATGGGCTTTAAAAGGAGAAGGCGTCCT
66 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
* * *
44576 GCTCTTTGAGGACTAAAGGTGCCACCAGCTTATGTGGGCTTT-AAAAG---GCGTCCTGCTCTTT
1 GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATATGGGCTTTAAAAAGAAAGCATCCTGCTCTTT
*
44637 GAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTCCT
66 GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
44685 GCTCTTTGAGGA-TGAA
1 GCTCTTTGAGGACTGAA
44701 AGGGTGAAAG
Statistics
Matches: 225, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
108 3 0.01
109 22 0.10
110 2 0.01
115 44 0.20
118 5 0.02
119 111 0.49
120 3 0.01
121 21 0.09
122 14 0.06
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (119 bp):
GCTCTTTGAGGACTGAAGGTGCCACCAGCTTATATGGGCTTTAAAAAGAAAGCATCCTGCTCTTT
GAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCGTCCT
Found at i:50560 original size:26 final size:27
Alignment explanation
Indices: 50531--50582 Score: 79
Period size: 28 Copynumber: 1.9 Consensus size: 27
50521 TTTTGAAAAT
50531 AAAAT-CGGGGTTGGAGTATCCCCGCG
1 AAAATACGGGGTTGGAGTATCCCCGCG
*
50557 AAAATAACGGTGTTGGAGTATCCCCG
1 AAAAT-ACGGGGTTGGAGTATCCCCG
50583 ATTGTGAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 5 0.22
28 18 0.78
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (27 bp):
AAAATACGGGGTTGGAGTATCCCCGCG
Found at i:50560 original size:79 final size:79
Alignment explanation
Indices: 50414--50633 Score: 250
Period size: 79 Copynumber: 2.8 Consensus size: 79
50404 ATTGGACTAG
* * * * * *
50414 AGTATCCCCGATTATGAAAAATCGGTGTTCT-AGAAATAAAAATTGGGGTTGGAGTATCCCCTCG
1 AGTATCCCCGATTATGAGAAATTGGTATTTTGA-AAAT-AAAATCGGGGTTGGAGTATCCCCGCG
50478 AAAATAATAGG-GTTGA
64 AAAATAA-AGGTGTTGA
*
50494 AGTATCCCTGATTAT-AGAAAATCT-GTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGCG
1 AGTATCCCCGATTATGAG-AAAT-TGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGCG
* *
50557 AAAATAACGGTGTTGG
64 AAAATAAAGGTGTTGA
* * * *
50573 AGTATCCCCGATTGTGAGAAATTGGTATTTTGGAAATAAAATCAGAGTTGGAGTATCCCCG
1 AGTATCCCCGATTATGAGAAATTGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCG
50634 ATTGTGAAAA
Statistics
Matches: 120, Mismatches: 14, Indels: 13
0.82 0.10 0.09
Matches are distributed among these distances:
78 3 0.03
79 87 0.73
80 29 0.24
81 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (79 bp):
AGTATCCCCGATTATGAGAAATTGGTATTTTGAAAATAAAATCGGGGTTGGAGTATCCCCGCGAA
AATAAAGGTGTTGA
Found at i:50631 original size:51 final size:51
Alignment explanation
Indices: 50568--50680 Score: 190
Period size: 51 Copynumber: 2.2 Consensus size: 51
50558 AAATAACGGT
* *
50568 GTTGGAGTATCCCCGATTGTGAGAAATTGGTATTTTGGAAATAAAATCAGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCAGA
* *
50619 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGGG
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCAGA
50670 GTTGGAGTATC
1 GTTGGAGTATC
50681 TCCTCGAAAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 58 1.00
ACGTcount: A:0.32, C:0.10, G:0.27, T:0.32
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCAGA
Found at i:50702 original size:28 final size:27
Alignment explanation
Indices: 50666--50734 Score: 86
Period size: 28 Copynumber: 2.5 Consensus size: 27
50656 GAAATAAAAT
50666 CGGGGTTGGAGTATCTCCTCGA-AAATAA
1 CGGGGTTGGAGTATC-CCT-GAGAAATAA
* *
50694 CGGGATTGGAGTATCCCTGATGGAATAA
1 CGGGGTTGGAGTATCCCTGA-GAAATAA
50722 CGGGGTTGGAGTA
1 CGGGGTTGGAGTA
50735 CCCCGATTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 2 0.06
27 3 0.08
28 31 0.86
ACGTcount: A:0.26, C:0.14, G:0.35, T:0.25
Consensus pattern (27 bp):
CGGGGTTGGAGTATCCCTGAGAAATAA
Found at i:50760 original size:107 final size:106
Alignment explanation
Indices: 50619--50897 Score: 373
Period size: 108 Copynumber: 2.6 Consensus size: 106
50609 TAAAATCAGA
* *
50619 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTAGAAATAAAATCGGGGTTGGAGTATCTCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
* *
50684 TCGAAAATAACGGGATTGGAGTATCCCTGATGGAATAACGGG
66 TCGAAAATAACGGGATTGGAGTATCCC-GATGAAATAACAGG
* * * * **
50726 GTTGGAGTA-CCCCGATTATGAAAAAAATAATATTTTTAGATATAAAGCCGGGGTTGGAGTATCC
1 GTTGGAGTATCCCCGATTGTG-AAAAATTAGTA-TTTTAGAAATAAAATCGGGGTTGGAGTATCC
*
50790 CCTCGAAAATAACGGGGTTGGAGTATCCCGATGAAATAACAGG
64 CCTCGAAAATAACGGGATTGGAGTATCCCGATGAAATAACAGG
* * * *
50833 GTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTT-GAAAATAAAATCGGAGTTGGAATATCCC
1 GTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAG-AAATAAAATCGGGGTTGGAGTATCCC
50897 C
65 C
50898 GATTGTGGAG
Statistics
Matches: 147, Mismatches: 21, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
105 1 0.01
106 36 0.24
107 46 0.31
108 64 0.44
ACGTcount: A:0.33, C:0.14, G:0.25, T:0.28
Consensus pattern (106 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTAGAAATAAAATCGGGGTTGGAGTATCCCC
TCGAAAATAACGGGATTGGAGTATCCCGATGAAATAACAGG
Found at i:50814 original size:28 final size:26
Alignment explanation
Indices: 50774--50846 Score: 101
Period size: 27 Copynumber: 2.7 Consensus size: 26
50764 GATATAAAGC
50774 CGGGGTTGGAGTATCCCCTCGAAAATAA
1 CGGGGTTGGAGTATCCCCT-G-AAATAA
*
50802 CGGGGTTGGAGTATCCCGATGAAATAA
1 CGGGGTTGGAGTATCCC-CTGAAATAA
*
50829 CAGGGTTGGAGTATCCCC
1 CGGGGTTGGAGTATCCCC
50847 AATTGTGAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 22 0.54
28 18 0.44
29 1 0.02
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.22
Consensus pattern (26 bp):
CGGGGTTGGAGTATCCCCTGAAATAA
Found at i:50946 original size:51 final size:50
Alignment explanation
Indices: 50831--50948 Score: 132
Period size: 51 Copynumber: 2.3 Consensus size: 50
50821 TGAAATAACA
*
50831 GGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTTGAAAATAAAATC
1 GGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTTGAAAATAAAACC
* * * *
50881 GGAGTTGGAATATCCCCGATTGTGGAGAATT-GATGTTTT-AGAAATAAAACC
1 GG-GTTGGAGTATCCCCAATTGTGAAAAATTAG-TGTTTTGA-AAATAAAACC
*
50932 GAGGTTCGAGTATCCCC
1 G-GGTTGGAGTATCCCC
50949 TCGAAAATAA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
50 4 0.07
51 52 0.91
52 1 0.02
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (50 bp):
GGGTTGGAGTATCCCCAATTGTGAAAAATTAGTGTTTTGAAAATAAAACC
Found at i:50967 original size:79 final size:79
Alignment explanation
Indices: 50884--51054 Score: 263
Period size: 79 Copynumber: 2.2 Consensus size: 79
50874 TAAAATCGGA
* * * *
50884 GTTGGAATATCCCCGATTGTGGAGAATTGATGTTTTAGAAATAAAACC-GAGGTTCGAGTATCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGAGGTTCGAGTA-CCC
50948 CTCGAAAATAACGGG
65 CTCGAAAATAACGGG
* *
50963 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGGGGTTGGAGTACCCC
1 GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGAGGTTCGAGTACCCC
*
51028 TCGAAAATAATGGG
66 TCGAAAATAACGGG
51042 GTTGGAGTATCCC
1 GTTGGAGTATCCC
51055 TGATGATTAA
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
79 74 0.88
80 10 0.12
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.27
Consensus pattern (79 bp):
GTTGGAGTATCCCCGATTATGAAAAATTGATGTTTTAGAAATAAAACCAGAGGTTCGAGTACCCC
TCGAAAATAACGGG
Found at i:51042 original size:27 final size:27
Alignment explanation
Indices: 51012--51082 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
51002 AATAAAACCA
*
51012 GGGGTTGGAGTACCCCTCGA-AAATAAT
1 GGGGTTGGAGTACCCCT-GATAAATAAC
* * *
51039 GGGGTTGGAGTATCCCTGATGATTAAC
1 GGGGTTGGAGTACCCCTGATAAATAAC
51066 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTA-CCCC
51083 GATTGTGAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
26 2 0.05
27 32 0.86
28 3 0.08
ACGTcount: A:0.23, C:0.18, G:0.34, T:0.25
Consensus pattern (27 bp):
GGGGTTGGAGTACCCCTGATAAATAAC
Found at i:51158 original size:52 final size:52
Alignment explanation
Indices: 51069--51184 Score: 144
Period size: 52 Copynumber: 2.2 Consensus size: 52
51059 GATTAACGGG
** * * *
51069 GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGAA
1 GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTTGAAAATAAAACCGAA
* **
51121 GTTGGAGTATCCCCGATTAAAGGAAAATTGATG-TTTTGAAAATAAAACCGGG
1 GTTGGAGTATCCCCGATT-AAGAAAAATTGATGTTTTTGAAAATAAAACCGAA
51173 GTTGGAGTATCC
1 GTTGGAGTATCC
51185 TTGATTGTGG
Statistics
Matches: 55, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 45 0.82
53 10 0.18
ACGTcount: A:0.33, C:0.11, G:0.26, T:0.30
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTAAGAAAAATTGATGTTTTTGAAAATAAAACCGAA
Found at i:53330 original size:26 final size:26
Alignment explanation
Indices: 53301--53355 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
53291 TCTGACCTCA
53301 AAACCAAGAAATCTTAACATAATTCC
1 AAACCAAGAAATCTTAACATAATTCC
53327 AAACCAAGAAATCTTAACATAATTCC
1 AAACCAAGAAATCTTAACATAATTCC
53353 AAA
1 AAA
53356 ATAAAATCTC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.53, C:0.22, G:0.04, T:0.22
Consensus pattern (26 bp):
AAACCAAGAAATCTTAACATAATTCC
Found at i:55302 original size:28 final size:28
Alignment explanation
Indices: 55268--55342 Score: 114
Period size: 28 Copynumber: 2.7 Consensus size: 28
55258 AAAATAAAAT
*
55268 CAGGGTTGGAGTATCCCCTCAAAAATAA
1 CAGGGTTGGAGTATCCCCGCAAAAATAA
*
55296 CAGGGTTGGAGTATCCCCGCGAAAATAA
1 CAGGGTTGGAGTATCCCCGCAAAAATAA
* *
55324 CGGGGTTGAAGTATCCCCG
1 CAGGGTTGGAGTATCCCCG
55343 ATTGTGAGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.29, C:0.23, G:0.28, T:0.20
Consensus pattern (28 bp):
CAGGGTTGGAGTATCCCCGCAAAAATAA
Found at i:56042 original size:42 final size:42
Alignment explanation
Indices: 55913--56057 Score: 140
Period size: 42 Copynumber: 3.5 Consensus size: 42
55903 TGTCCCACTT
* * * *
55913 TTTGAGGATAAAGG-AAAAGAG-AATGAAATAGGTCTTGCTC
1 TTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCTTGCTC
* * *
55953 CTTGAGGACAAAGGAAGATAA-GGAAAGGAAA-GTGTCTTGCT-
1 TTTGAGGACAAAGGAA-A-AAGGGAAACGAAATATGTCTTGCTC
*
55994 TCTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCCTGCTC
1 T-TTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCTTGCTC
56037 TTTGAGGACGAAA-GAAAAAGG
1 TTTGAGGAC-AAAGGAAAAAGG
56058 AAAATAAAGT
Statistics
Matches: 86, Mismatches: 10, Indels: 16
0.77 0.09 0.14
Matches are distributed among these distances:
40 14 0.16
41 11 0.13
42 49 0.57
43 12 0.14
ACGTcount: A:0.41, C:0.10, G:0.29, T:0.20
Consensus pattern (42 bp):
TTTGAGGACAAAGGAAAAAGGGAAACGAAATATGTCTTGCTC
Found at i:56211 original size:55 final size:57
Alignment explanation
Indices: 56071--56234 Score: 208
Period size: 55 Copynumber: 2.8 Consensus size: 57
56061 ATAAAGTGCA
* * *
56071 TCCTACTCTTTGAGGACT-AAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAAGGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAA-TGCCACCAACTTGTGTGGGCTTT---AAGG-AAGGCG
* *
56132 TCCTGCTCTTTGAGGATTGGAAAATGCCACTAACTTGTGTGGGCTTTAA-G-AGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGGAAGGCG
*
56187 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTTTGTGGGCTTTA
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTA
56235 GCAATTTTCC
Statistics
Matches: 94, Mismatches: 8, Indels: 8
0.85 0.07 0.07
Matches are distributed among these distances:
55 50 0.53
57 1 0.01
58 2 0.02
61 37 0.39
62 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (57 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAGGAAGGCG
Found at i:59788 original size:1 final size:1
Alignment explanation
Indices: 59784--59873 Score: 72
Period size: 1 Copynumber: 90.0 Consensus size: 1
59774 CATTCTTTTT
* * * * * * * * *
59784 AAAAAAAAATAACAAAAAAAACAAAAAACAAAAAAACAAAAAAAAAATAAAAAACAACAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
59849 AAAACAAAGAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
59874 GAAGAGAGAA
Statistics
Matches: 65, Mismatches: 24, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 65 1.00
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (1 bp):
A
Found at i:59826 original size:26 final size:24
Alignment explanation
Indices: 59786--59873 Score: 86
Period size: 26 Copynumber: 3.4 Consensus size: 24
59776 TTCTTTTTAA
59786 AAAAAAATAACAAAAAAAACAAAAAAC
1 AAAAAAA-AA-AAAAAAAA-AAAAAAC
59813 AAAAAAACAAAAAAAAAATAAAAAAC
1 AAAAAAA-AAAAAAAAAA-AAAAAAC
* * *
59839 AACAAAAAACAAAACAAAGAAAAAAG
1 AA-AAAAAA-AAAAAAAAAAAAAAAC
59865 AAAAAAAAA
1 AAAAAAAAA
59874 GAAGAGAGAA
Statistics
Matches: 54, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
24 1 0.02
25 6 0.11
26 26 0.48
27 21 0.39
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.02
Consensus pattern (24 bp):
AAAAAAAAAAAAAAAAAAAAAAAC
Found at i:59836 original size:33 final size:33
Alignment explanation
Indices: 59799--59870 Score: 101
Period size: 33 Copynumber: 2.2 Consensus size: 33
59789 AAAATAACAA
*
59799 AAAAAACAA-AAAACAAAAAAACAAAAAAAAAAT
1 AAAAAACAACAAAA-AAAAAAACAAAAAAAAAAG
* *
59832 AAAAAACAACAAAAAACAAAACAAAGAAAAAAG
1 AAAAAACAACAAAAAAAAAAACAAAAAAAAAAG
59865 AAAAAA
1 AAAAAA
59871 AAAGAAGAGA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
33 31 0.89
34 4 0.11
ACGTcount: A:0.86, C:0.10, G:0.03, T:0.01
Consensus pattern (33 bp):
AAAAAACAACAAAAAAAAAAACAAAAAAAAAAG
Found at i:59837 original size:36 final size:37
Alignment explanation
Indices: 59784--59873 Score: 121
Period size: 36 Copynumber: 2.4 Consensus size: 37
59774 CATTCTTTTT
59784 AAAAAAAAATAACAAAAAAAACAAAAAACAAAA-AAACA
1 AAAAAAAAAT-A-AAAAAAAACAAAAAACAAAACAAACA
* *
59822 AAAAAAAAATAAAAAACAACAAAAAACAAAACAAAGA
1 AAAAAAAAATAAAAAAAAACAAAAAACAAAACAAACA
*
59859 AAAAAGAAA-AAAAAA
1 AAAAAAAAATAAAAAA
59874 GAAGAGAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
36 25 0.52
37 13 0.27
38 10 0.21
ACGTcount: A:0.87, C:0.09, G:0.02, T:0.02
Consensus pattern (37 bp):
AAAAAAAAATAAAAAAAAACAAAAAACAAAACAAACA
Found at i:59853 original size:15 final size:14
Alignment explanation
Indices: 59784--59862 Score: 83
Period size: 15 Copynumber: 5.6 Consensus size: 14
59774 CATTCTTTTT
*
59784 AAAAAAAA-ATAAC
1 AAAAAAAACAAAAC
*
59797 AAAAAAAACAAAAA
1 AAAAAAAACAAAAC
59811 ACAAAAAAACAAAA-
1 A-AAAAAAACAAAAC
59825 AAAAAATAA-AAAAC
1 AAAAAA-AACAAAAC
59839 AACAAAAAACAAAAC
1 AA-AAAAAACAAAAC
59854 AAAGAAAAA
1 AAA-AAAAA
59863 AGAAAAAAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 12
0.80 0.03 0.17
Matches are distributed among these distances:
13 17 0.30
14 12 0.21
15 28 0.49
ACGTcount: A:0.86, C:0.10, G:0.01, T:0.03
Consensus pattern (14 bp):
AAAAAAAACAAAAC
Found at i:59862 original size:10 final size:9
Alignment explanation
Indices: 59787--59873 Score: 85
Period size: 9 Copynumber: 9.8 Consensus size: 9
59777 TCTTTTTAAA
59787 AAAAAATAAC
1 AAAAAA-AAC
59797 AAAAAAAAC
1 AAAAAAAAC
59806 --AAAAAAC
1 AAAAAAAAC
59813 -AAAAAAAC
1 AAAAAAAAC
59821 AAAAAAAA-
1 AAAAAAAAC
59829 AATAAAAAAC
1 AA-AAAAAAC
59839 AACAAAAAAC
1 AA-AAAAAAC
* *
59849 AAAACAAAG
1 AAAAAAAAC
59858 AAAAAAGAA-
1 AAAAAA-AAC
59867 AAAAAAA
1 AAAAAAA
59874 GAAGAGAGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
7 7 0.10
8 10 0.15
9 32 0.47
10 19 0.28
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.02
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:60550 original size:55 final size:55
Alignment explanation
Indices: 60475--60836 Score: 435
Period size: 55 Copynumber: 6.4 Consensus size: 55
60465 ACAAGGCCTG
*
60475 GGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGT
1 GGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGT
* * * *
60530 GGCATGTTCTAGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACATAAGTTGGT
1 GGCATTTTCCAGTCCTCAAAGAGCAGGACGCC-TTTC-----AAAGCCCACACAAGTTGGT
60591 GGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGT
1 GGCATTTTCCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGT
* * *
60646 GGAATTTTCCAGTCCTCAAAGAGCAGGACGGCTCTT-AAAGCCCACACAAATTGGT
1 GGCATTTTCCAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGT
*
60701 GGCATTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGT
1 GGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGT
* * *
60756 GGCATTTTTCAGTCCTCAAAAAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGT
1 GGCATTTTCCAGTCCTCAAAGAGCAGGACG-----CC-TTTCAAAGCCCACACAAGTTGGT
*
60817 GGCACTTTT-TAGTCCTCAAA
1 GGCA-TTTTCCAGTCCTCAAA
60837 AAGCGGGATA
Statistics
Matches: 270, Mismatches: 21, Indels: 26
0.85 0.07 0.08
Matches are distributed among these distances:
54 5 0.02
55 170 0.63
56 4 0.01
60 3 0.01
61 84 0.31
62 4 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (55 bp):
GGCATTTTCCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGT
Found at i:60634 original size:116 final size:115
Alignment explanation
Indices: 60475--60836 Score: 481
Period size: 116 Copynumber: 3.2 Consensus size: 115
60465 ACAAGGCCTG
*
60475 GGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCATGTTCT
1 GGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCAT-TTCT
* *
60540 AGTCCTCAAAGAGCAGGACACCTTTTCTTTTTAAAGCCCACATAAGTTGGT
65 AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGT
*
60591 GGCA-TTTTCCAGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGAATTTT
1 GGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCT-TTCAAAGCCCACACAAGTTGGTGGCA-TTT
* * *
60654 CCAGTCCTCAAAGAGCAGGACGGC---TC---TTAAAGCCCACACAAATTGGT
63 CTAGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGT
* *
60701 GGCA-TTTTCCAGTCCTCAAAGAGCAAGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTTT
1 GGCACTTTT-CAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTCT
* * * *
60765 CAGTCCTCAAAAAGCAGGACGCCTTTCCTTTTCAAAGCCCACACGAGTTGGT
65 -AGTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGT
*
60817 GGCACTTTTTAGTCCTCAAA
1 GGCACTTTTCAGTCCTCAAA
60837 AAGCGGGATA
Statistics
Matches: 216, Mismatches: 18, Indels: 24
0.84 0.07 0.09
Matches are distributed among these distances:
109 5 0.02
110 93 0.43
113 3 0.01
115 4 0.02
116 104 0.48
117 7 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (115 bp):
GGCACTTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACAAGTTGGTGGCATTTCTA
GTCCTCAAAGAGCAGGACGCCTTTTCTTTTTAAAGCCCACACAAGTTGGT
Found at i:61586 original size:28 final size:28
Alignment explanation
Indices: 61546--61618 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
61536 TTCTCACAAT
61546 CGGGGATACTCCAACCCCGTTATTTTCG
1 CGGGGATACTCCAACCCCGTTATTTTCG
*
61574 CGGGGATACTCCAACCCCGTTATTTTTG
1 CGGGGATACTCCAACCCCGTTATTTTCG
*
61602 CGGGGATAATCCAACCC
1 CGGGGATACTCCAACCC
61619 TGATTTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.26
Consensus pattern (28 bp):
CGGGGATACTCCAACCCCGTTATTTTCG
Found at i:61659 original size:79 final size:79
Alignment explanation
Indices: 61576--61751 Score: 226
Period size: 79 Copynumber: 2.2 Consensus size: 79
61566 TATTTTCGCG
**** * *
61576 GGGATACTCCAACCCCGTTATTTTTGCGGGGATAATCCAACCCTGATTTTATTTTCAAAACACCA
1 GGGATACTCCAACCCCGTTATTTCCAAGGGGATAATCCAACCCCGATTTTATTTCCAAAACACCA
* *
61641 ATTTTCTATAATTA
66 ATTTTCCATAATCA
* * * *
61655 GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAGAACACCG
1 GGGATACTCCAACCCCGTTATTTCCAAGGGGATAATCCAACCCCGATTTTATTTCCAAAACACCA
61720 ATTTTCCATAATCA
66 ATTTTCCATAATCA
* *
61734 GGGGTACTCCAGCCCCGT
1 GGGATACTCCAACCCCGT
61752 CGTCATCTCC
Statistics
Matches: 82, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
79 82 1.00
ACGTcount: A:0.27, C:0.27, G:0.15, T:0.31
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCAAGGGGATAATCCAACCCCGATTTTATTTCCAAAACACCA
ATTTTCCATAATCA
Found at i:63100 original size:52 final size:52
Alignment explanation
Indices: 63036--63168 Score: 178
Period size: 52 Copynumber: 2.6 Consensus size: 52
63026 GTTTCTCAAC
* *
63036 TTTCCACAATCGGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAAT
1 TTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCCGAAAACACCAAT
** * *
63087 TTTCCTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCGAAAATACCAAT
1 TTTCC-ACAATCGGGGATACTCCAACCCCGATTTTATTTCCGAAAACACCAAT
* *
63140 TTTTCACAATCGGGGATATTCCAACCCCG
1 TTTCCACAATCGGGGATACTCCAACCCCG
63169 TTAATCATCG
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
51 5 0.07
52 50 0.72
53 14 0.20
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.32
Consensus pattern (52 bp):
TTTCCACAATCGGGGATACTCCAACCCCGATTTTATTTCCGAAAACACCAAT
Found at i:63213 original size:27 final size:27
Alignment explanation
Indices: 63148--63221 Score: 96
Period size: 27 Copynumber: 2.7 Consensus size: 27
63138 ATTTTTCACA
*
63148 ATCGGGGATATTCCAACCCCGTTAATC
1 ATCGGGGATACTCCAACCCCGTTAATC
*
63175 ATCGGGGATACTCCAACCCCGTT-ATT
1 ATCGGGGATACTCCAACCCCGTTAATC
* *
63201 TTCGAGGGGTACTCCAACCCC
1 ATCG-GGGATACTCCAACCCC
63222 CGGTTTTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 5 0.12
27 37 0.88
ACGTcount: A:0.23, C:0.32, G:0.20, T:0.24
Consensus pattern (27 bp):
ATCGGGGATACTCCAACCCCGTTAATC
Found at i:63258 original size:79 final size:79
Alignment explanation
Indices: 63175--63342 Score: 239
Period size: 79 Copynumber: 2.1 Consensus size: 79
63165 CCCGTTAATC
63175 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGG-TACTCCAACCCCCGGTTTTATTTCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA-CCCCGGTTTTATTTCTAAAA
* * * * *
63239 TATCAATTTTTCATA
65 CACCAATTCTCCACA
* * **
63254 ATCGGGGATACTCCAATCCCGTTATTTTTGAGGGGATACTTGAACCCCGGTTTTATTTCTAAAAC
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
63319 ACCAATTCTCCACA
66 ACCAATTCTCCACA
63333 ATCGGGGATA
1 ATCGGGGATA
63343 TTTCAAGTCC
Statistics
Matches: 79, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
79 73 0.92
80 6 0.08
ACGTcount: A:0.26, C:0.24, G:0.17, T:0.32
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGTTTTATTTCTAAAAC
ACCAATTCTCCACA
Found at i:63420 original size:28 final size:28
Alignment explanation
Indices: 63387--63460 Score: 112
Period size: 28 Copynumber: 2.6 Consensus size: 28
63377 TTTCACAATT
* **
63387 GGGGATACTCCAACCCTGTTATTTCATC
1 GGGGATACTCCAACCCCGTTATTTCAGA
*
63415 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTATTTCAGA
63443 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
63461 GCTTTATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.24
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTCAGA
Found at i:63475 original size:237 final size:239
Alignment explanation
Indices: 63047--63517 Score: 657
Period size: 237 Copynumber: 2.0 Consensus size: 239
63037 TTCCACAATC
* **
63047 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTTTCCTTTAATCGGGGATACTCCAA
1 GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTCTCCTACAATCGGGGATACTCCAA
* * *
63112 CTCCGATTTTATTTCCGAAAATACCAATTTTTCACAATCGGGGATATTCCAACCCCGTTAATCAT
66 CTCCAATTTTATTTCCGAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTTAATCAT
* * *
63177 CGGGGATACTCCAACCCCGTTATTTTCGAGGGGTACTCCAACCCCCGGTTTTATTTCT-AAAATA
131 CGGGGATACTCCAACCCCGTTATTTCCGAGGGGTACTCCAACCCCCGGCTTTATATCTAAAAATA
*
63241 -TCAATTTTTCATAATCGGGGATACTCCAATCCCGTTATTTTTGA
196 TTCAATTTTTCATAATCGGGG-TACTCCAACCCCGTTATTTTTGA
** * *
63285 GGGGATACTTGAACCCCGGTTTTA-TTTCTAAAACACCAATTCTCC-ACAATCGGGGATATTTCA
1 GGGGATACTCCAACCCCGGTTTTATTTTC-AAAACACCAATTCTCCTACAATCGGGGATACTCCA
* * * * * *
63348 AGTCCAATTTTATTTTC-AAAACACTAATTTTTCACAATTGGGGATACTCCAACCCTGTTATTTC
65 ACTCCAATTTTATTTCCGAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTTA-ATC
63412 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAA-CCCCGGCTTTATATCTAAAA
129 ATCGGGGATACTCCAACCCCGTTATTTCCGAGGGG-TACTCCAACCCCCGGCTTTATATCTAAAA
***
63476 ATATTGTTTTTTTCATAATCGGGGTACTCCAACCCCGTTATT
193 ATATTCAATTTTTCATAATCGGGGTACTCCAACCCCGTTATT
63518 CCATCAGGGA
Statistics
Matches: 205, Mismatches: 23, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
236 38 0.19
237 82 0.40
238 68 0.33
239 17 0.08
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (239 bp):
GGGGATACTCCAACCCCGGTTTTATTTTCAAAACACCAATTCTCCTACAATCGGGGATACTCCAA
CTCCAATTTTATTTCCGAAAACACCAATTTTTCACAATCGGGGATACTCCAACCCCGTTAATCAT
CGGGGATACTCCAACCCCGTTATTTCCGAGGGGTACTCCAACCCCCGGCTTTATATCTAAAAATA
TTCAATTTTTCATAATCGGGGTACTCCAACCCCGTTATTTTTGA
Found at i:63575 original size:108 final size:109
Alignment explanation
Indices: 63375--63615 Score: 308
Period size: 108 Copynumber: 2.2 Consensus size: 109
63365 AAAACACTAA
* * * * *
63375 TTTTTCACAATTGGGGATACTCCAACCCTGTTATTTCATCGGGGATACTCCAACCCCGTTATTTC
1 TTTTTCACAATCGGGGATACTCCAACCCCGTTATTCCATCAGGGATACTCCAACCCCGATATTTC
*
63440 CGAGGGGATACTCCAACCCCGGCTTTATATCTAAAAATATTGTT
66 CGAGGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTT
* * *
63484 TTTTTCATAATCGGGG-TACTCCAACCCCGTTATTCCATCAGGGATACTCCAATCTCGATATTTC
1 TTTTTCACAATCGGGGATACTCCAACCCCGTTATTCCATCAGGGATACTCCAACCCCGATATTTC
* * * ****
63548 CGAGGGGATACTCCAACCCTGATTTTATTTCT-AAAATA-CCAA
66 CGAGGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTT
*
63590 TTTTCCACAATCGGGGATACTCCAAC
1 TTTTTCACAATCGGGGATACTCCAAC
63616 TCTGATTTTA
Statistics
Matches: 113, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
106 14 0.12
107 15 0.13
108 70 0.62
109 14 0.12
ACGTcount: A:0.26, C:0.27, G:0.15, T:0.32
Consensus pattern (109 bp):
TTTTTCACAATCGGGGATACTCCAACCCCGTTATTCCATCAGGGATACTCCAACCCCGATATTTC
CGAGGGGATACTCCAACCCCGACTTTATATCTAAAAATATTGTT
Found at i:63612 original size:51 final size:51
Alignment explanation
Indices: 63551--63670 Score: 188
Period size: 51 Copynumber: 2.4 Consensus size: 51
63541 ATATTTCCGA
* *
63551 GGGGATACTCCAACCCTGATTTTATTTCTAAAATACCAATTT-TCCACAATC
1 GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCT-CACAATC
*
63602 GGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
1 GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
*
63653 AGGGATACTCCAACCCTG
1 GGGGATACTCCAACCCTG
63671 TTATTTTCGC
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
51 62 0.98
52 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.30
Consensus pattern (51 bp):
GGGGATACTCCAACCCTGATTTTATTTCCAAAACACCAATTTCTCACAATC
Found at i:63684 original size:79 final size:79
Alignment explanation
Indices: 63601--63821 Score: 298
Period size: 79 Copynumber: 2.8 Consensus size: 79
63591 TTTCCACAAT
* * * * *
63601 CGGGGATACTCCAACTCTGATTTTATTTCCAAAACACCAATTTCTCACAATCAGGGATACTCCAA
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAA
* *
63666 CCCTGTTATTTTCG
66 CCCTATTATTTTCA
* * *
63680 CGGGGATACTCCAACCCCGATTTTATTTTCAAAATACCGATTTTTTATAATCAGGGATACTCCAA
1 CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAA
63745 CCCTATTATTTTCA
66 CCCTATTATTTTCA
* * * * *
63759 AGGGGATACTCCAACCCCAATTTTTATTTCTAGAACACCGATTTTTCATAATCGGGGATACTC
1 CGGGGATACTCCAACCCCGA-TTTTATTTCCAAAACACCGATTTTTCATAATCAGGGATACTC
63822 TAGTCCAGTT
Statistics
Matches: 123, Mismatches: 18, Indels: 1
0.87 0.13 0.01
Matches are distributed among these distances:
79 87 0.71
80 36 0.29
ACGTcount: A:0.29, C:0.25, G:0.13, T:0.33
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCGATTTTTCATAATCAGGGATACTCCAA
CCCTATTATTTTCA
Found at i:63753 original size:26 final size:28
Alignment explanation
Indices: 63724--63775 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
63714 TACCGATTTT
63724 TTATAATC-A-GGGATACTCCAACCCTA
1 TTATAATCAAGGGGATACTCCAACCCTA
**
63750 TTATTTTCAAGGGGATACTCCAACCC
1 TTATAATCAAGGGGATACTCCAACCC
63776 CAATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 6 0.27
27 1 0.05
28 15 0.68
ACGTcount: A:0.31, C:0.27, G:0.13, T:0.29
Consensus pattern (28 bp):
TTATAATCAAGGGGATACTCCAACCCTA
Found at i:69804 original size:52 final size:52
Alignment explanation
Indices: 69655--69783 Score: 197
Period size: 52 Copynumber: 2.5 Consensus size: 52
69645 CGAAATATGA
* * **
69655 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGT
1 AAATTTGCCTTCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
*
69707 AAATTTACCTGT-ATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
1 AAATTTGCCT-TCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
69759 AAATTTGCCTTCATGTATCGATACA
1 AAATTTGCCTTCATGTATCGATACA
69784 AAGATCAGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
51 1 0.01
52 68 0.99
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTTCATGTATCGATACATTTCATAGTGTATCGATACATCTGGAC
Found at i:69845 original size:13 final size:13
Alignment explanation
Indices: 69827--69878 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
69817 AGCTTCGTAG
69827 CGATACATTGTAT
1 CGATACATTGTAT
69840 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
69859 CGATACATTGTAT
1 CGATACATTGTAT
69872 CGATACA
1 CGATACA
69879 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:69859 original size:19 final size:19
Alignment explanation
Indices: 69835--69899 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
69825 AGCGATACAT
69835 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
69854 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
69867 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
69886 TGTATCGATACAAA
1 TGTATCGATACAAA
69900 TAGTTGAAAT
Statistics
Matches: 39, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:69868 original size:32 final size:32
Alignment explanation
Indices: 69827--69897 Score: 133
Period size: 32 Copynumber: 2.2 Consensus size: 32
69817 AGCTTCGTAG
69827 CGATACATTGTATCGATACAAAACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
*
69859 CGATACATTGTATCGATACAACACTTATGTAT
1 CGATACATTGTATCGATACAAAACTTATGTAT
69891 CGATACA
1 CGATACA
69898 AATAGTTGAA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.37, C:0.18, G:0.13, T:0.32
Consensus pattern (32 bp):
CGATACATTGTATCGATACAAAACTTATGTAT
Found at i:70653 original size:52 final size:51
Alignment explanation
Indices: 70472--71214 Score: 472
Period size: 52 Copynumber: 15.0 Consensus size: 51
70462 TTTTGCAATG
* * * * * *
70472 TGCCACTGTGCAGATACAAGGCCTGCCACACTGGACTTAAAGAT-ATG--G-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA-GAAGA
* * * * * *
70520 TACCAATATGCTGATTCACGGCCAACGATATTGGGCTTAAAGATGAGAAAAAGGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAG---AA-GA
* * * * *
70575 TGTCAATGTGCTGATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG-A
* **
70627 TGTCAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTTAAAGATGAGAAAAAGGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGAG---AA-GA
* * * * * * *
70683 TGTCAATATGCTGATTCACGGTCAGCGAGATTAGACTTGAAGATGAGAAGAA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAG-A
* * **
70735 TGTCAATGTGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAGATGAGAAAAAGGA
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATT-GGACTTAAAGATGAG---AA-GA
* * * *
70791 TGTCAATATGCTGATTCAAGGCCAACGATATTGGACTT--A-A--AG--G-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
* * * *
70834 TGCCAATGTGCTGAGAT-AAGGCCAGCGACATTGGTCTTAAAGATGACAAAGG
1 TGCCAATGTGCTGA-TTCAAGGCCAGCGACATTGGACTTAAAGATGA-GAAGA
* * * * *
70886 CGCCAATATACTGATTCAAGGCCAGCGATATTAGACTT--A-A--AG--G-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
* * * * *
70929 TGTCAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGAT--GAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
*
70978 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA-GAAGA
* * * *
71030 CGCCAATATGCTGATTCAAGCCCAGCGATATTGGACTT--A-A--AG--G-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
* * *
71073 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT-AA-A-GACAAGG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
* *
71121 TGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT--A-A--AG--G-
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
71164 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAG
1 TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGA-GAAG
71215 GCGCCACGGA
Statistics
Matches: 550, Mismatches: 91, Indels: 105
0.74 0.12 0.14
Matches are distributed among these distances:
43 128 0.23
44 7 0.01
45 4 0.01
46 6 0.01
47 5 0.01
48 71 0.13
49 44 0.08
50 4 0.01
51 5 0.01
52 133 0.24
53 23 0.04
54 1 0.00
55 53 0.10
56 64 0.12
57 2 0.00
ACGTcount: A:0.33, C:0.17, G:0.26, T:0.24
Consensus pattern (51 bp):
TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGAGAAGA
Found at i:70684 original size:108 final size:105
Alignment explanation
Indices: 70523--71071 Score: 520
Period size: 108 Copynumber: 5.4 Consensus size: 105
70513 GATATGGTAC
* * * * *
70523 CAATATGCTGATTCACGGCCAACGATATTGGG-CTTAAAGATGAGAAAAAGGATGTCAATGTGCT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGCT
* *
70587 GATTCACGGTCAGCGACATTAGACTTGAAGATGAGAAGAATGT
66 GATTCAAGGCCAGCGACATTAGACTT-AAGATGAGAAG--TGT
*
70630 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTTTTAAAGATGAGAAAAAGGATGTCAATATGCT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGCT
* * *
70695 GATTCACGGTCAGCGAGATTAGACTTGAAGATGAGAAGAATGT
66 GATTCAAGGCCAGCGACATTAGACTT-AAGATGAGAAG--TGT
* *
70738 CAATGTGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAGATGAGAAAAAGGATGTCAATATGCT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGCT
* * * *
70803 GATTCAAGGCCAACGATATTGGACTT-A-A--AG--GTGC
66 GATTCAAGGCCAGCGACATTAGACTTAAGATGAGAAGTGT
* * * * *
70837 CAATGTGCTGAGAT-AAGGCCAGCGACATT-GGTCTTAAAGAT--GACAAAGG-CGCCAATATAC
1 CAATGTGCTGA-TTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGC
*
70897 TGATTCAAGGCCAGCGATATTAGACTT-A-A--AG--GTGT
65 TGATTCAAGGCCAGCGACATTAGACTTAAGATGAGAAGTGT
* * * *
70932 CAATGTGCTGATTCAAGGCCAACAACATT-GGTCTTAAAGAT--G---AAGG-TGCCAATGTGCT
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGCT
* * *
70990 GATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAGGCGC
66 GATTCAAGGCCAGCGACATTAGACTT-AAGATGA-GAA-GTGT
* * * *
71033 CAATATGCTGATTCAAGCCCAGCGATATT-GGACTTAAAG
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAG
71072 GTGCCAATGT
Statistics
Matches: 390, Mismatches: 40, Indels: 30
0.85 0.09 0.07
Matches are distributed among these distances:
92 37 0.09
94 2 0.01
95 78 0.20
96 7 0.02
97 1 0.00
98 12 0.03
99 27 0.07
100 1 0.00
101 36 0.09
103 2 0.01
105 1 0.00
106 1 0.00
107 28 0.07
108 157 0.40
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (105 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGGTCTTAAAGATGAGAAAAAGGATGTCAATATGCT
GATTCAAGGCCAGCGACATTAGACTTAAGATGAGAAGTGT
Found at i:70847 original size:43 final size:43
Alignment explanation
Indices: 70785--71205 Score: 367
Period size: 43 Copynumber: 9.1 Consensus size: 43
70775 AAGATGAGAA
* * * *
70785 AAAGGATGTCAATATGCTGATTCAAGGCCAACGATATTGGACTT
1 AAAGG-TGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* *
70829 AAAGGTGCCAATGTGCTGAGAT-AAGGCCAGCGACATTGGTCTTAAAGAT
1 AAAGGTGCCAATGTGCTGA-TTCAAGGCCAGCGACATTGGAC-T-----T
* * * * *
70878 GACAAAGGCGCCAATATACTGATTCAAGGCCAGCGATATTAGACTT
1 ---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * * *
70924 AAAGGTGTCAATGTGCTGATTCAAGGCCAACAACATTGGTCTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
70967 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
1 ----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* * *
71016 AAAGATGATGAAGGCGCCAATATGCTGATTCAAGCCCAGCGATATTGGACTT
1 AAAG--G-T------GCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
*
71068 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
* *
71111 AAAGACAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ----A-AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
71159 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
1 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
71202 AAAG
1 AAAG
71206 ATGATGAAGG
Statistics
Matches: 308, Mismatches: 38, Indels: 63
0.75 0.09 0.15
Matches are distributed among these distances:
43 142 0.46
44 8 0.03
45 2 0.01
46 2 0.01
47 2 0.01
48 39 0.13
49 40 0.13
50 1 0.00
51 2 0.01
52 70 0.23
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.24
Consensus pattern (43 bp):
AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT
Found at i:70917 original size:95 final size:94
Alignment explanation
Indices: 70738--71205 Score: 389
Period size: 95 Copynumber: 5.0 Consensus size: 94
70728 AGAAGAATGT
* * *
70738 CAATGTGCTGATTCAAGGCCAGCGATATTGGGTTTTAAAGATGAGAAAAAGGATGTCAATATGCT
1 CAATGTGCTGATTCAAGGCCAGCGACATT-GGTCTTAAAGAT--G-AAAAGG-TGCCAATATGCT
*
70803 GATTCAAGGCCAACGATATTGGACTTAAAGGTGC
61 GATTCAAGGCCAGCGATATTGGACTTAAAGGTGC
* * *
70837 CAATGTGCTGAGAT-AAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGCGCCAATATACTGAT
1 CAATGTGCTGA-TTCAAGGCCAGCGACATTGGTCTTAAAGATGA-AAAGGTGCCAATATGCTGAT
* *
70901 TCAAGGCCAGCGATATTAGACTTAAAGGTGT
64 TCAAGGCCAGCGATATTGGACTTAAAGGTGC
* * *
70932 CAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGATG--AAGGTGCCAATGTGCTGATTC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAAAGGTGCCAATATGCTGATTC
*
70995 AAGGCCAGCGACATTGGACTTAAAGATGATGAAGGCGC
66 AAGGCCAGCGATATTGGACTTAAAG--G-T------GC
* * * * *
71033 CAATATGCTGATTCAAGCCCAGCGATATTGGAC-T-----T--AAAGGTGCCAATGTGCTGATTC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAAAGGTGCCAATATGCTGATTC
* *
71090 AAGGCCAGCGACATTGGTCTTAAAGACAAGGTGC
66 AAGGCCAGCGATATTGGACTT----A-AAGGTGC
* * * *
71124 CAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----T--AAAGGTGCCAATGTGCTGATTC
1 CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAAAGGTGCCAATATGCTGATTC
*
71181 AAGGCCAGCGACATTGGACTTAAAG
66 AAGGCCAGCGATATTGGACTTAAAG
71206 ATGATGAAGG
Statistics
Matches: 324, Mismatches: 27, Indels: 49
0.81 0.07 0.12
Matches are distributed among these distances:
86 3 0.01
87 1 0.00
91 78 0.24
92 41 0.13
94 2 0.01
95 121 0.37
96 6 0.02
97 1 0.00
98 12 0.04
99 26 0.08
100 5 0.02
101 28 0.09
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (94 bp):
CAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGATGAAAAGGTGCCAATATGCTGATTC
AAGGCCAGCGATATTGGACTTAAAGGTGC
Found at i:71017 original size:144 final size:142
Alignment explanation
Indices: 70785--71162 Score: 541
Period size: 144 Copynumber: 2.7 Consensus size: 142
70775 AAGATGAGAA
* * *
70785 AAAGGATGTCAATATGCTGATTCAAGGCCAACGATATTGGACTT----AAAGGTGCCAATGTGCT
1 AAAGG-TGTCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAAAGGTGCCAATGTGCT
* * *
70846 GAGAT-AAGGCCAGCGACATTGGTCTTAAAGATGACAAAGGCGCCAATATACTGATTCAAGGCCA
65 GA-TTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATACTGATTCAAGCCCA
70910 GCGATATTAGACTT
129 GCGATATTAGACTT
*
70924 AAAGGTGTCAATGTGCTGATTCAAGGCCAACAACATTGGTCTTAAAGATGAAGGTGCCAATGTGC
1 AAAGGTGTCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA--AAGGTGCCAATGTGC
** *
70989 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAGGCGCCAATATGCTGATTCAAGCCCA
64 TGATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATACTGATTCAAGCCCA
*
71054 GCGATATTGGACTT
129 GCGATATTAGACTT
* * *
71068 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGACAAGGTGCCAATATGCT
1 AAAGGTGTCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGA-AAGGTGCCAATGTGCT
*
71133 GATTCAAGGCCAGCGATATTGGACTTAAAG
65 GATTCAAGGCCAGCGACATTGGACTTAAAG
71163 GTGCCAATGT
Statistics
Matches: 215, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
138 34 0.16
139 5 0.02
142 1 0.00
143 45 0.21
144 130 0.60
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (142 bp):
AAAGGTGTCAATGTGCTGATTCAAGGCCAACGACATTGGTCTTAAAGAAAGGTGCCAATGTGCTG
ATTCAAGGCCAGCGACATTGGACTTAAAGATGACAAAGGCGCCAATATACTGATTCAAGCCCAGC
GATATTAGACTT
Found at i:71186 original size:91 final size:92
Alignment explanation
Indices: 70974--71207 Score: 398
Period size: 91 Copynumber: 2.5 Consensus size: 92
70964 CTTAAAGATG
*
70974 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATGATGAAGGCGCCAATAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTT-AA-A-GATCAAGGCGCCAATAT
71039 GCTGATTCAAGCCCAGCGATATTGGACTTA
63 GCTGATTCAAGCCCAGCGATATTGGACTTA
* *
71069 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGTCTTAAAGA-CAAGGTGCCAATATGCT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAAGGCGCCAATATGCT
*
71133 GATTCAAGGCCAGCGATATTGGACTTA
66 GATTCAAGCCCAGCGATATTGGACTTA
71160 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
1 AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
71208 GATGAAGGCG
Statistics
Matches: 133, Mismatches: 5, Indels: 5
0.93 0.03 0.03
Matches are distributed among these distances:
91 87 0.65
92 2 0.02
93 1 0.01
94 2 0.02
95 41 0.31
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (92 bp):
AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATCAAGGCGCCAATATGCT
GATTCAAGCCCAGCGATATTGGACTTA
Found at i:71347 original size:27 final size:28
Alignment explanation
Indices: 71249--71360 Score: 129
Period size: 30 Copynumber: 4.0 Consensus size: 28
71239 AGGAAAAAGA
*
71249 TGCCACAGACTTGTGGGCTTTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
* *
71277 TGCCACTGATTTGTGGGC-TTTGAAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTG---AAGGT
*
71307 TGCCACTGATTTGTGGGC-TTTGAAGGT
1 TGCCACTGACTTGTGGGCTTTTGAAGGT
* *
71334 TGCCATTGACTTGTAGGCTTTTGAAGG
1 TGCCACTGACTTGTGGGCTTTTGAAGG
71361 GTGAGGAATG
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
27 23 0.32
28 24 0.33
30 26 0.36
ACGTcount: A:0.19, C:0.15, G:0.32, T:0.34
Consensus pattern (28 bp):
TGCCACTGACTTGTGGGCTTTTGAAGGT
Found at i:71358 original size:58 final size:57
Alignment explanation
Indices: 71241--71354 Score: 158
Period size: 57 Copynumber: 2.0 Consensus size: 57
71231 GGCTTAAAAG
* *
71241 GAAAAAGATGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGATTTGTGGGCTTT
1 GAAAAAGATGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTAGGCTTT
* * * *
71298 GAAAAAGGGTGCCACTGATTTGTGGGC-TTTGAAGGTTGCCATTGACTTGTAGGCTTT
1 GAAAAA-GATGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTAGGCTTT
71355 TGAAGGGTGA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 33 0.66
58 17 0.34
ACGTcount: A:0.22, C:0.15, G:0.31, T:0.32
Consensus pattern (57 bp):
GAAAAAGATGCCACAGACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTAGGCTTT
Found at i:72805 original size:1 final size:1
Alignment explanation
Indices: 72801--72911 Score: 51
Period size: 1 Copynumber: 111.0 Consensus size: 1
72791 CTTTTTGTTG
* * * * * * * * * *
72801 TTTTTTGTTTTTTTGTTTTTCTTTTGTTTTTTGTTTTGTTTGTTTTTTTTCTTCTCTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* ** * * * ***
72866 TTGTTTTGGTTGTTTTTGTTTTTTTTTCTTTTCGCTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
72912 GCGGAGGATG
Statistics
Matches: 76, Mismatches: 34, Indels: 0
0.69 0.31 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.00, C:0.06, G:0.11, T:0.83
Consensus pattern (1 bp):
T
Found at i:72815 original size:18 final size:18
Alignment explanation
Indices: 72792--72890 Score: 78
Period size: 19 Copynumber: 5.3 Consensus size: 18
72782 ATTCGGACCC
72792 TTTTTGTTGTTTTTTGTT
1 TTTTTGTTGTTTTTTGTT
*
72810 TTTTTGTTTTTCTTTTGTT
1 TTTTTGTTGTT-TTTTGTT
*
72829 TTTTGTTTTGTTTGTTT-TT
1 TTTT-TGTTGTTT-TTTGTT
* *
72848 TTTCTTCTCT-TTTTTTTTT
1 TTT-TTGT-TGTTTTTTGTT
72867 TGTTTTGGTTG-TTTTTGTT
1 T-TTTT-GTTGTTTTTTGTT
72886 TTTTT
1 TTTTT
72891 TTCTTTTCGC
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
18 17 0.26
19 36 0.55
20 13 0.20
ACGTcount: A:0.00, C:0.04, G:0.13, T:0.83
Consensus pattern (18 bp):
TTTTTGTTGTTTTTTGTT
Found at i:72827 original size:26 final size:27
Alignment explanation
Indices: 72798--72872 Score: 100
Period size: 26 Copynumber: 2.8 Consensus size: 27
72788 ACCCTTTTTG
72798 TTGTTTTTTGTTTTTTTGTTTTTCTT-
1 TTGTTTTTTGTTTTTTTGTTTTTCTTC
*
72824 TTGTTTTTTGTTTTGTTTGTTTTTTTTC
1 TTGTTTTTTGTTTT-TTTGTTTTTCTTC
* *
72852 TTCTCTTTT-TTTTTTTGTTTT
1 TTGTTTTTTGTTTTTTTGTTTT
72873 GGTTGTTTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
26 22 0.50
27 15 0.34
28 7 0.16
ACGTcount: A:0.00, C:0.05, G:0.11, T:0.84
Consensus pattern (27 bp):
TTGTTTTTTGTTTTTTTGTTTTTCTTC
Found at i:72831 original size:35 final size:34
Alignment explanation
Indices: 72792--72897 Score: 105
Period size: 35 Copynumber: 3.1 Consensus size: 34
72782 ATTCGGACCC
72792 TTTTTGTTGTTTTTTGTTTTTTTGTTTTTCTTTTGT
1 TTTTTGTTGTTTTTTGTTTTTTTGTTTTTC-TTT-T
* *
72828 TTTTTGTT-TTGTTTGTTTTTTT-TCTTCTCTTTT
1 TTTTTGTTGTTTTTTGTTTTTTTGT-TTTTCTTTT
*
72861 TTTTT-TTG-TTTTGGTTGTTTTTGTTTTT-TTTT
1 TTTTTGTTGTTTTTTGTT-TTTTTGTTTTTCTTTT
*
72893 CTTTT
1 TTTTT
72898 CGCTTTTTTT
Statistics
Matches: 60, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
32 16 0.27
33 14 0.23
34 5 0.08
35 17 0.28
36 8 0.13
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (34 bp):
TTTTTGTTGTTTTTTGTTTTTTTGTTTTTCTTTT
Found at i:72846 original size:42 final size:43
Alignment explanation
Indices: 72792--72912 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 43
72782 ATTCGGACCC
72792 TTTTTG-TTGTTTTTTGTTTT-T-TTGTTTTTCTTTTGTTTT-TTG
1 TTTTTGTTTGTTTTTT-TTTTCTCTT-TTTTT-TTTTGTTTTGTTG
72834 -TTTTGTTTGTTTTTTTTCTTCTCTTTTTTTTTTTGTTTTGGTTG
1 TTTTTGTTTGTTTTTTTT-TTCTCTTTTTTTTTTTGTTTT-GTTG
*
72878 TTTTTGTTT-TTTTTTCTTTTCGCTTTTTTTTTTTG
1 TTTTTGTTTGTTTTTT-TTTTCTCTTTTTTTTTTTG
72913 CGGAGGATGC
Statistics
Matches: 70, Mismatches: 1, Indels: 14
0.82 0.01 0.16
Matches are distributed among these distances:
41 7 0.10
42 20 0.29
43 6 0.09
44 27 0.39
45 10 0.14
ACGTcount: A:0.00, C:0.06, G:0.12, T:0.82
Consensus pattern (43 bp):
TTTTTGTTTGTTTTTTTTTTCTCTTTTTTTTTTTGTTTTGTTG
Found at i:72906 original size:25 final size:24
Alignment explanation
Indices: 72808--72911 Score: 74
Period size: 25 Copynumber: 4.3 Consensus size: 24
72798 TTGTTTTTTG
*
72808 TTTTTTTGTTTTTCTTTTG-TT-T
1 TTTTTTTTTTTTTCTTTTGCTTGT
* *
72830 TTTGTTTTGTTTGTTT-TTTTTCTT-C
1 TTT-TTTT-TTT-TTTCTTTTGCTTGT
* * *
72855 TCTTTTTTTTTTTGTTTTGGTTGT
1 TTTTTTTTTTTTTCTTTTGCTTGT
72879 TTTTGTTTTTTTTTCTTTTCGCTT-T
1 TTTT-TTTTTTTTTCTTTT-GCTTGT
72904 TTTTTTTT
1 TTTTTTTT
72912 GCGGAGGATG
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
22 6 0.09
23 13 0.20
24 17 0.27
25 25 0.39
26 3 0.05
ACGTcount: A:0.00, C:0.07, G:0.11, T:0.83
Consensus pattern (24 bp):
TTTTTTTTTTTTTCTTTTGCTTGT
Found at i:86862 original size:52 final size:52
Alignment explanation
Indices: 86780--86906 Score: 184
Period size: 52 Copynumber: 2.4 Consensus size: 52
86770 CGAAATATGA
* * **
86780 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATAAATCTGGGT
1 AAATTTGCCTGTATGTATCGATACAGTTCATAGTGTATCGATAAATCTGGAC
* *
86832 AAATTTACCTGTATGTATCGATACAGTTCATAGTGTATCGATACATCTGGAC
1 AAATTTGCCTGTATGTATCGATACAGTTCATAGTGTATCGATAAATCTGGAC
86884 AAATTTGCCT-TCATGTATCGATA
1 AAATTTGCCTGT-ATGTATCGATA
86907 TAAAGATCAG
Statistics
Matches: 67, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
51 1 0.01
52 66 0.99
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGTATGTATCGATACAGTTCATAGTGTATCGATAAATCTGGAC
Found at i:86919 original size:52 final size:52
Alignment explanation
Indices: 86780--86929 Score: 137
Period size: 52 Copynumber: 2.9 Consensus size: 52
86770 CGAAATATGA
* * *** * **
86780 AAATTTGCCTGCATGTATCGATACATTTCAT-AGTGTATCGATAAATCTGGGT
1 AAATTTGCCTTCATGTATCGATATA-AAGATCAGTGTATCGATACATCTGGAC
* * *
86832 AAATTTACCTGT-ATGTATCG--ATACAGTTCATAGTGTATCGATACATCTGGAC
1 AAATTTGCCT-TCATGTATCGATATAAAGATC--AGTGTATCGATACATCTGGAC
86884 AAATTTGCCTTCATGTATCGATATAAAGATCAGTGTATCGATACAT
1 AAATTTGCCTTCATGTATCGATATAAAGATCAGTGTATCGATACAT
86930 TTTCTTGGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
49 1 0.01
50 2 0.03
51 1 0.01
52 67 0.86
54 7 0.09
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35
Consensus pattern (52 bp):
AAATTTGCCTTCATGTATCGATATAAAGATCAGTGTATCGATACATCTGGAC
Found at i:86991 original size:32 final size:32
Alignment explanation
Indices: 86948--87054 Score: 178
Period size: 32 Copynumber: 3.3 Consensus size: 32
86938 TAGTAGCTTC
86948 GTAGCGATACATTGTATCGATACAAAACTTAT
1 GTAGCGATACATTGTATCGATACAAAACTTAT
*
86980 GCAGCGATACATTGTATCGATACAAAACTTAT
1 GTAGCGATACATTGTATCGATACAAAACTTAT
* *
87012 GTATCGATACATTGTATCGATACAACACTTAT
1 GTAGCGATACATTGTATCGATACAAAACTTAT
*
87044 GTATCGATACA
1 GTAGCGATACA
87055 AATCGTTGAA
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 71 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (32 bp):
GTAGCGATACATTGTATCGATACAAAACTTAT
Found at i:87002 original size:13 final size:13
Alignment explanation
Indices: 86984--87035 Score: 50
Period size: 13 Copynumber: 3.5 Consensus size: 13
86974 ACTTATGCAG
86984 CGATACATTGTAT
1 CGATACATTGTAT
86997 CGATACAAAACTTATGTAT
1 CGATAC---A-TT--GTAT
87016 CGATACATTGTAT
1 CGATACATTGTAT
87029 CGATACA
1 CGATACA
87036 ACACTTATGT
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
13 17 0.52
15 2 0.06
16 2 0.06
17 2 0.06
19 10 0.30
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:87016 original size:19 final size:19
Alignment explanation
Indices: 86960--87056 Score: 83
Period size: 19 Copynumber: 5.7 Consensus size: 19
86950 AGCGATACAT
86960 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
* *
86979 TGCAGCGATAC---A--T-
1 TGTATCGATACAAAACTTA
86992 TGTATCGATACAAAACTTA
1 TGTATCGATACAAAACTTA
87011 TGTATCGATAC---A--T-
1 TGTATCGATACAAAACTTA
*
87024 TGTATCGATACAACACTTA
1 TGTATCGATACAAAACTTA
87043 TGTATCGATACAAA
1 TGTATCGATACAAA
87057 TCGTTGAAAT
Statistics
Matches: 61, Mismatches: 5, Indels: 24
0.68 0.06 0.27
Matches are distributed among these distances:
13 20 0.33
14 2 0.03
16 4 0.07
18 2 0.03
19 33 0.54
ACGTcount: A:0.38, C:0.18, G:0.13, T:0.31
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:98218 original size:1 final size:1
Alignment explanation
Indices: 98214--98311 Score: 97
Period size: 1 Copynumber: 98.0 Consensus size: 1
98204 ATTCTTTTTC
* * * * * * *
98214 AAAAAAAAAAACAAAAAAAAACAACAAAAAAAAAACAAAAAAACAAAAAAAAAACAAAAAAAACA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
98279 AAAAACAAAACAAAGAAAAAAAGAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
98312 GAGAGAAGAA
Statistics
Matches: 75, Mismatches: 22, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 75 1.00
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (1 bp):
A
Found at i:98244 original size:20 final size:19
Alignment explanation
Indices: 98213--98308 Score: 117
Period size: 20 Copynumber: 5.0 Consensus size: 19
98203 CATTCTTTTT
*
98213 CAAAAAAA-AAAACAAAAA
1 CAAAAAAACAAAAAAAAAA
*
98231 -AAAACAACAAAAAAAAAA
1 CAAAAAAACAAAAAAAAAA
98249 CAAAAAAACAAAAAAAAAA
1 CAAAAAAACAAAAAAAAAA
98268 CAAAAAAAACAAAAAACAAAA
1 C-AAAAAAACAAAAAA-AAAA
98289 CAAAGAAAA-AAAGAAAAAAA
1 CAAA-AAAACAAA-AAAAAAA
98309 AAAGAGAGAA
Statistics
Matches: 69, Mismatches: 3, Indels: 10
0.84 0.04 0.12
Matches are distributed among these distances:
17 6 0.09
18 9 0.13
19 18 0.26
20 24 0.35
21 12 0.17
ACGTcount: A:0.88, C:0.10, G:0.02, T:0.00
Consensus pattern (19 bp):
CAAAAAAACAAAAAAAAAA
Found at i:98259 original size:32 final size:30
Alignment explanation
Indices: 98214--98311 Score: 126
Period size: 32 Copynumber: 3.2 Consensus size: 30
98204 ATTCTTTTTC
98214 AAAAAAAAAAACAAAAAAAAACAACAAAAAA
1 AAAAAAAAAAACAAAAAAAAACAA-AAAAAA
98245 AAAACAAAAAAACAAAAAAAAAACAAAAAAAA
1 AAAA-AAAAAAAC-AAAAAAAAACAAAAAAAA
* * *
98277 CAAAAAACAAAACAAAGAAAAA-AAGAAAAA
1 -AAAAAAAAAAACAAAAAAAAACAAAAAAAA
98307 AAAAA
1 AAAAA
98312 GAGAGAAGAA
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
29 5 0.08
30 7 0.11
31 12 0.20
32 21 0.34
33 16 0.26
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (30 bp):
AAAAAAAAAAACAAAAAAAAACAAAAAAAA
Found at i:98313 original size:11 final size:11
Alignment explanation
Indices: 98215--98311 Score: 121
Period size: 11 Copynumber: 8.9 Consensus size: 11
98205 TTCTTTTTCA
98215 AAAAAAAAAAC
1 AAAAAAAAAAC
98226 -AAAAAAAAAC
1 AAAAAAAAAAC
98236 AACAAAAAAAA-
1 AA-AAAAAAAAC
*
98247 AACAAAAAAAC
1 AAAAAAAAAAC
98258 AAAAAAAAAAC
1 AAAAAAAAAAC
98269 --AAAAAAAAC
1 AAAAAAAAAAC
98278 AAAAAACAAAAC
1 AAAAAA-AAAAC
*
98290 AAAGAAAAAAAG
1 AAA-AAAAAAAC
98302 AAAAAAAAAA
1 AAAAAAAAAA
98312 GAGAGAAGAA
Statistics
Matches: 76, Mismatches: 3, Indels: 14
0.82 0.03 0.15
Matches are distributed among these distances:
9 9 0.12
10 17 0.22
11 24 0.32
12 23 0.30
13 3 0.04
ACGTcount: A:0.89, C:0.09, G:0.02, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:100501 original size:20 final size:21
Alignment explanation
Indices: 100464--100502 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 21
100454 ATACTAAAAA
100464 ATTTTATAAAAATCTTTTAGT
1 ATTTTATAAAAATCTTTTAGT
100485 ATTTTA-AAAAGAT-TTTTA
1 ATTTTATAAAA-ATCTTTTA
100503 AACATGTAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.41, C:0.03, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTTTATAAAAATCTTTTAGT
Found at i:102032 original size:52 final size:52
Alignment explanation
Indices: 101883--102011 Score: 231
Period size: 52 Copynumber: 2.5 Consensus size: 52
101873 GAAAATATGA
101883 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
*
101935 AAATTTGCCTGTATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
* *
101987 AAATTTACTTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
102012 AAGATCAGTG
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 73 1.00
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
Found at i:103112 original size:49 final size:47
Alignment explanation
Indices: 102987--103233 Score: 270
Period size: 49 Copynumber: 5.1 Consensus size: 47
102977 TATTGGACTT
* * *
102987 GTGCTAATGTGCTGATTCAAGGCCAGCAACATTGGACTCAAGACGGAAAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGC-ACATTGGACTTAA-A--GATAAG
* *
103038 GTGCCAATCTGCTGATTCAAGGCCAGCGCTATTGGACTTAAAGATGAAG
1 GTGCCAATGTGCTGATTCAAGGCCAGCAC-ATTGGACTTAAAGAT-AAG
* *
103087 GTGCCAATGTGCTGATTCAAAGCCAGCGACATTGGTCTTAAAGATAAGG
1 GTGCCAATGTGCTGATTCAAGGCCAGC-ACATTGGACTTAAAGATAA-G
* *
103136 GTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT----A-AAG
1 GTGCCAATGTGCTGATTCAAGGCCAGC-ACATTGGACTTAAAGATAAG
*
103179 GTGCCAATGTGCTGAGTCAAGGCCAGCTACATTGGACTTAAAGATAAGG
1 GTGCCAATGTGCTGATTCAAGGCCAGC-ACATTGGACTTAAAGATAA-G
103228 GTGCCA
1 GTGCCA
103234 CGGACTCGTG
Statistics
Matches: 169, Mismatches: 17, Indels: 22
0.81 0.08 0.11
Matches are distributed among these distances:
43 37 0.22
44 2 0.01
45 1 0.01
47 1 0.01
48 6 0.04
49 84 0.50
50 3 0.02
51 35 0.21
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.23
Consensus pattern (47 bp):
GTGCCAATGTGCTGATTCAAGGCCAGCACATTGGACTTAAAGATAAG
Found at i:103224 original size:92 final size:92
Alignment explanation
Indices: 102951--103233 Score: 333
Period size: 92 Copynumber: 3.0 Consensus size: 92
102941 GATAAAGATA
* * *
102951 CCAATATGCTGATTCACGGCCAACGATATTGGACTT----GTGCTAATGTGCTGATTCAAGGCCA
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
* *
103012 GCAACATTGGACTCAAGACGGA-AAAGGTG
66 GCAACATTGGACTTAA-A--GATAAGGGTG
* *
103041 CCAATCTGCTGATTCAAGGCCAGCGCTATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCA
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT----A--AAGGTGCCAATGTGCTGATTCA
* * *
103106 AAGCCAGCGACATTGGTCTTAAAGATAAGGGTG
60 AGGCCAGCAACATTGGACTTAAAGATAAGGGTG
* *
103139 CCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGAGTCAAGGCCA
1 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
*
103204 GCTACATTGGACTTAAAGATAAGGGTG
66 GCAACATTGGACTTAAAGATAAGGGTG
103231 CCA
1 CCA
103234 CGGACTCGTG
Statistics
Matches: 165, Mismatches: 17, Indels: 20
0.82 0.08 0.10
Matches are distributed among these distances:
90 32 0.19
92 54 0.33
94 1 0.01
97 2 0.01
98 39 0.24
99 1 0.01
100 36 0.22
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (92 bp):
CCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCA
GCAACATTGGACTTAAAGATAAGGGTG
Done.