Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold470
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 597437
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
File 6 of 6
Found at i:564015 original size:15 final size:15
Alignment explanation
Indices: 563997--564035 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
563987 ATACACTTAT
563997 ATTTAATAATTTTAAA
1 ATTT-ATAATTTTAAA
*
564013 TTTTA-AATTTTAAA
1 ATTTATAATTTTAAA
564027 ATTTATAAT
1 ATTTATAAT
564036 ATTTTATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
14 13 0.65
15 4 0.20
16 3 0.15
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
ATTTATAATTTTAAA
Found at i:564016 original size:7 final size:7
Alignment explanation
Indices: 564004--564064 Score: 58
Period size: 7 Copynumber: 8.9 Consensus size: 7
563994 TATATTTAAT
564004 AATTTTA
1 AATTTTA
564011 AATTTTA
1 AATTTTA
564018 AATTTTAA
1 AATTTT-A
564026 AATTTATA
1 AATTT-TA
564034 ATATTTT-
1 A-ATTTTA
564041 -ATTTT-
1 AATTTTA
*
564046 ATTTTTA
1 AATTTTA
564053 AATTTT-
1 AATTTTA
564059 AATTTT
1 AATTTT
564065 TTTATAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 11
0.78 0.03 0.18
Matches are distributed among these distances:
5 5 0.11
6 10 0.21
7 18 0.38
8 9 0.19
9 5 0.11
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
AATTTTA
Found at i:564072 original size:18 final size:18
Alignment explanation
Indices: 564027--564072 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
564017 AAATTTTAAA
564027 ATTTATAATATTTTATTTT
1 ATTTATAA-ATTTTATTTT
*
564046 ATTTTTAAATTTTAATTTT
1 ATTTATAAATTTT-ATTTT
564065 -TTTATAAA
1 ATTTATAAA
564073 AAAAGAAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 12 0.50
19 12 0.50
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
ATTTATAAATTTTATTTT
Found at i:564326 original size:6 final size:7
Alignment explanation
Indices: 564309--564341 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
564299 GCAAAAAGGT
564309 TTTTTTA
1 TTTTTTA
564316 TTTTTTA
1 TTTTTTA
564323 TTTTTTA
1 TTTTTTA
564330 TTTTTTTA
1 -TTTTTTA
564338 TTTT
1 TTTT
564342 GACCAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:564328 original size:14 final size:15
Alignment explanation
Indices: 564309--564341 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
564299 GCAAAAAGGT
564309 TTTTTTA-TTTTTTA
1 TTTTTTATTTTTTTA
564323 TTTTTTATTTTTTTA
1 TTTTTTATTTTTTTA
564338 TTTT
1 TTTT
564342 GACCAATTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (15 bp):
TTTTTTATTTTTTTA
Found at i:564472 original size:19 final size:19
Alignment explanation
Indices: 564448--564513 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
564438 AGGTTTAATA
564448 ATTTATATATTTAAATTAT
1 ATTTATATATTTAAATTAT
* *
564467 ATTTATATTTTTATATTAT
1 ATTTATATATTTAAATTAT
* *
564486 A-AT-TATATTTAAAATAT
1 ATTTATATATTTAAATTAT
564503 -TTTATAT-TTTA
1 ATTTATATATTTA
564514 TAAAATTTAA
Statistics
Matches: 38, Mismatches: 7, Indels: 6
0.75 0.14 0.12
Matches are distributed among these distances:
17 16 0.42
18 4 0.11
19 18 0.47
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTTATATATTTAAATTAT
Found at i:564482 original size:25 final size:27
Alignment explanation
Indices: 564441--564516 Score: 86
Period size: 25 Copynumber: 2.8 Consensus size: 27
564431 ATTGACTAGG
*
564441 TTTAATAATTTATATATTTA-AATTATA
1 TTTAA-AATTTTTATATTTATAATTATA
*
564468 TTT-ATATTTTTATA-TTATAATTATA
1 TTTAAAATTTTTATATTTATAATTATA
564493 TTTAAAATATTTTATATTTTATAA
1 TTTAAAAT-TTTTATA-TTTATAA
564517 AATTTAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 3 0.07
25 18 0.44
26 4 0.10
27 10 0.24
29 6 0.15
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (27 bp):
TTTAAAATTTTTATATTTATAATTATA
Found at i:570612 original size:22 final size:22
Alignment explanation
Indices: 570584--570625 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
570574 ATAAATTACC
*
570584 AAAGAAACAAAT-TGAGTAAATT
1 AAAGAAA-AAATCTAAGTAAATT
570606 AAAGAAAAAATCTAAGTAAA
1 AAAGAAAAAATCTAAGTAAA
570626 ATTTTACGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.64, C:0.05, G:0.12, T:0.19
Consensus pattern (22 bp):
AAAGAAAAAATCTAAGTAAATT
Found at i:571489 original size:13 final size:13
Alignment explanation
Indices: 571450--571489 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
571440 ATTATTATTT
571450 AATATAA-TTTTA
1 AATATAATTTTTA
* *
571462 AATATTATTTATA
1 AATATAATTTTTA
571475 AATATAATTTTTA
1 AATATAATTTTTA
571488 AA
1 AA
571490 ATTTATCGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
12 6 0.26
13 17 0.74
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
AATATAATTTTTA
Found at i:571964 original size:18 final size:20
Alignment explanation
Indices: 571919--571964 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
571909 TTTATTTAAA
571919 TTTAATTATAAAAATATATAT
1 TTTAA-TATAAAAATATATAT
*
571940 ATTAATATAAAAATA-AT-T
1 TTTAATATAAAAATATATAT
571958 TTTAATA
1 TTTAATA
571965 ATTTTATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
18 7 0.30
19 2 0.09
20 10 0.43
21 4 0.17
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TTTAATATAAAAATATATAT
Found at i:572583 original size:23 final size:21
Alignment explanation
Indices: 572534--572587 Score: 72
Period size: 21 Copynumber: 2.5 Consensus size: 21
572524 AATTATGAAA
*
572534 AAATTATAAATATTTAAATTT
1 AAATTTTAAATATTTAAATTT
572555 AAATTTTAAATATATTAAATATT
1 AAATTTTAAATAT-TTAAAT-TT
*
572578 ATATTTTAAA
1 AAATTTTAAA
572588 AATGATTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 12 0.41
22 6 0.21
23 11 0.38
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
AAATTTTAAATATTTAAATTT
Found at i:573598 original size:32 final size:32
Alignment explanation
Indices: 573561--573621 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
573551 TACATCAATA
*
573561 TATTAAAATATATAAAAATATAAATTATTAAT
1 TATTAAAATATATAAAAATATAAAATATTAAT
* *
573593 TATTAAAATTTATATAAATATAAAATATT
1 TATTAAAATATATAAAAATATAAAATATT
573622 TAAACATAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (32 bp):
TATTAAAATATATAAAAATATAAAATATTAAT
Found at i:573644 original size:28 final size:27
Alignment explanation
Indices: 573604--573677 Score: 87
Period size: 28 Copynumber: 2.7 Consensus size: 27
573594 ATTAAAATTT
573604 ATATAAAT-ATAAAATATTTAAACATA
1 ATATAAATAATAAAATATTTAAACATA
* * *
573630 ATATAACATAATAAAATATATGAATATA
1 ATATAA-ATAATAAAATATTTAAACATA
*
573658 ATATAAATATATAAATTATT
1 ATATAAATA-ATAAAATATT
573678 AAATTTAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 6 0.15
27 5 0.12
28 29 0.73
ACGTcount: A:0.59, C:0.03, G:0.01, T:0.36
Consensus pattern (27 bp):
ATATAAATAATAAAATATTTAAACATA
Found at i:573690 original size:28 final size:27
Alignment explanation
Indices: 573577--573686 Score: 95
Period size: 26 Copynumber: 4.1 Consensus size: 27
573567 AATATATAAA
*
573577 AATATAAAT-TATTAATTATTAAA-ATT
1 AATATAAATATATAAATTATTAAATA-T
* *
573603 TATATAAATATA-AAA-TATTTAAACAT
1 AATATAAATATATAAATTA-TTAAATAT
* *
573629 AATATAACATA-ATAAAATATATGAATAT
1 AATATAA-ATATATAAATTAT-TAAATAT
*
573657 AATATAAATATATAAATTATTAAATTT
1 AATATAAATATATAAATTATTAAATAT
573684 AAT
1 AAT
573687 TATATTTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
25 2 0.03
26 23 0.34
27 21 0.31
28 22 0.32
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (27 bp):
AATATAAATATATAAATTATTAAATAT
Found at i:574502 original size:15 final size:15
Alignment explanation
Indices: 574484--574516 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
574474 ATAGATAATT
574484 TTTAAATATT-TATTA
1 TTTAAAT-TTATATTA
574499 TTTAAATTTATATTA
1 TTTAAATTTATATTA
574514 TTT
1 TTT
574517 TTACAGATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.12
15 15 0.88
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TTTAAATTTATATTA
Found at i:574662 original size:17 final size:16
Alignment explanation
Indices: 574621--574709 Score: 57
Period size: 17 Copynumber: 5.7 Consensus size: 16
574611 ATTAACGAGA
574621 ATTAAATTTTAATTTTT
1 ATTAAA-TTTAATTTTT
574638 A--AAA-TTAATTATTT
1 ATTAAATTTAATT-TTT
574652 ATTAAATTTAAATTTTT
1 ATTAAATTT-AATTTTT
**
574669 AAGAAATTTAAATTTTT
1 ATTAAATTT-AATTTTT
*
574686 -TATAAA--TAA-TATT
1 AT-TAAATTTAATTTTT
574699 ATTAAATTTAA
1 ATTAAATTTAA
574710 ATTTAATATA
Statistics
Matches: 58, Mismatches: 5, Indels: 20
0.70 0.06 0.24
Matches are distributed among these distances:
13 13 0.22
14 7 0.12
15 7 0.12
16 3 0.05
17 24 0.41
18 4 0.07
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (16 bp):
ATTAAATTTAATTTTT
Found at i:574706 original size:30 final size:30
Alignment explanation
Indices: 574672--574767 Score: 105
Period size: 30 Copynumber: 3.4 Consensus size: 30
574662 AATTTTTAAG
*
574672 AAATTTAAATTTTTTATAAATAATATTATT
1 AAATTTAAATTTTTTATAAATAATATAATT
**
574702 AAATTTAAATTTAATATAAATAATA-AATT
1 AAATTTAAATTTTTTATAAATAATATAATT
* *
574731 -AATTTTAA--TTTTA-AAATAAT-TAACT
1 AAATTTAAATTTTTTATAAATAATATAATT
574756 AAATTTAAATTT
1 AAATTTAAATTT
574768 AAATATTATA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
25 10 0.19
26 10 0.19
28 8 0.15
29 3 0.06
30 23 0.43
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (30 bp):
AAATTTAAATTTTTTATAAATAATATAATT
Found at i:574762 original size:25 final size:24
Alignment explanation
Indices: 574707--574779 Score: 67
Period size: 25 Copynumber: 3.0 Consensus size: 24
574697 TTATTAAATT
* *
574707 TAAATTTAATAT-AAATAATAAAT
1 TAAATTTAATTTAAAATAATAAAC
* *
574730 TAATTTTAATTTTAAAATAATTAAC
1 TAAATTTAA-TTTAAAATAATAAAC
*
574755 TAAATTTAAATTTAAATATTATAAA
1 TAAATTT-AATTTAAA-ATAATAAA
574780 AGAAAAACAA
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 8 0.21
24 2 0.05
25 21 0.54
26 8 0.21
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (24 bp):
TAAATTTAATTTAAAATAATAAAC
Found at i:575063 original size:27 final size:28
Alignment explanation
Indices: 575033--575088 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 28
575023 ATTTAACAAT
*
575033 ATATGAGATTAATATAAAAATA-ATTAA
1 ATATAAGATTAATATAAAAATATATTAA
* *
575060 ATATAATATTAATATATAAATATATTAA
1 ATATAAGATTAATATAAAAATATATTAA
575088 A
1 A
575089 ATTTATATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
27 19 0.76
28 6 0.24
ACGTcount: A:0.59, C:0.00, G:0.04, T:0.38
Consensus pattern (28 bp):
ATATAAGATTAATATAAAAATATATTAA
Found at i:575084 original size:16 final size:16
Alignment explanation
Indices: 575040--575087 Score: 52
Period size: 16 Copynumber: 3.3 Consensus size: 16
575030 AATATATGAG
*
575040 ATTAATATAAAAATA-
1 ATTAATATATAAATAT
575055 ATTAA-ATAT--A-AT
1 ATTAATATATAAATAT
575067 ATTAATATATAAATAT
1 ATTAATATATAAATAT
575083 ATTAA
1 ATTAA
575088 AATTTATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 9
0.73 0.03 0.24
Matches are distributed among these distances:
11 1 0.04
12 6 0.22
13 4 0.15
14 3 0.11
15 6 0.22
16 7 0.26
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATTAATATATAAATAT
Found at i:575097 original size:20 final size:20
Alignment explanation
Indices: 575072--575110 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
575062 ATAATATTAA
575072 TATATAA-ATATATTAAAATT
1 TATATAATA-ATATTAAAATT
575092 TATATAATAATATTAAAAT
1 TATATAATAATATTAAAAT
575111 ACACTGATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.94
21 1 0.06
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (20 bp):
TATATAATAATATTAAAATT
Found at i:575099 original size:27 final size:27
Alignment explanation
Indices: 575040--575111 Score: 81
Period size: 27 Copynumber: 2.6 Consensus size: 27
575030 AATATATGAG
575040 ATTAATATAAAAATAATTAAATATAAT
1 ATTAATATAAAAATAATTAAATATAAT
* *
575067 ATTAATATATAAATATATTAAAATTTATAT
1 ATTAATATAAAAATA-ATT-AAATATA-AT
* *
575097 AATAATATTAAAATA
1 ATTAATATAAAAATA
575112 CACTGATGGT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
27 14 0.38
28 3 0.08
29 6 0.16
30 14 0.38
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (27 bp):
ATTAATATAAAAATAATTAAATATAAT
Found at i:581411 original size:17 final size:18
Alignment explanation
Indices: 581389--581442 Score: 62
Period size: 16 Copynumber: 3.2 Consensus size: 18
581379 TTAATTCAAG
581389 TTTTTAATTTTTAAA-TA
1 TTTTTAATTTTTAAATTA
*
581406 TTTTTAA-ATTTAAATTA
1 TTTTTAATTTTTAAATTA
*
581423 -TTTTAA-ATTTAAATTA
1 TTTTTAATTTTTAAATTA
581439 TTTT
1 TTTT
581443 ATATTTAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
16 22 0.65
17 12 0.35
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TTTTTAATTTTTAAATTA
Found at i:581417 original size:16 final size:16
Alignment explanation
Indices: 581398--581461 Score: 87
Period size: 16 Copynumber: 4.1 Consensus size: 16
581388 GTTTTTAATT
581398 TTTAAA-TATTTTTAAA
1 TTTAAATTA-TTTTAAA
581414 TTTAAATTATTTTAAA
1 TTTAAATTATTTTAAA
*
581430 TTTAAATTATTTTATA
1 TTTAAATTATTTTAAA
*
581446 TTT-AATTTTTTTAAA
1 TTTAAATTATTTTAAA
581461 T
1 T
581462 GTAAGTTGAT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
15 11 0.25
16 31 0.70
17 2 0.05
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAATTATTTTAAA
Found at i:592551 original size:238 final size:238
Alignment explanation
Indices: 592133--592589 Score: 896
Period size: 238 Copynumber: 1.9 Consensus size: 238
592123 ATACCCAGCA
*
592133 CTGTAAGCAAAACACAGAACATTTTGTGGAAAATGCTATCACTCAGCATAAATTACTTATGAATA
1 CTGTAAGCAAAACACAGAACATTTTGTGGAAAATGCTATCACTAAGCATAAATTACTTATGAATA
592198 TGAAGAAACCAAGTTTATTCTCTAACACTCTGACCGTGCACATAGACAGGTACGCTGTAAGAGTA
66 TGAAGAAACCAAGTTTATTCTCTAACACTCTGACCGTGCACATAGACAGGTACGCTGTAAGAGTA
*
592263 AGCACATATGAGTGAGCCTAAAAGTGAGTAAAGACAAGCAAATTTTCATTCTTATTTCTAAGATT
131 AGCACATATGAGTGAGCCTAAAAGTGAGTAAAGACAAGCAAATTTTCATTCTTATATCTAAGATT
592328 AAAGGCACAATAAGAACAAAAAAATTGTTCTCTAACAGGTACG
196 AAAGGCACAATAAGAACAAAAAAATTGTTCTCTAACAGGTACG
592371 CTGTAAGCAAAACACAGAACATTTTGTGGAAAATGCTATCACTAAGCATAAATTACTTATGAATA
1 CTGTAAGCAAAACACAGAACATTTTGTGGAAAATGCTATCACTAAGCATAAATTACTTATGAATA
592436 TGAAGAAACCAAGTTTATTCTCTAACACTCTGACCGTGCACATAGACAGGTACGCTGTAAGAGTA
66 TGAAGAAACCAAGTTTATTCTCTAACACTCTGACCGTGCACATAGACAGGTACGCTGTAAGAGTA
592501 AGCACATATGAGTGAGCCTAAAAGTGAGTAAAGACAAGCAAATTTTCATTCTTATATCTAAGATT
131 AGCACATATGAGTGAGCCTAAAAGTGAGTAAAGACAAGCAAATTTTCATTCTTATATCTAAGATT
592566 AAAGGCACAATAAGAACAAAAAAA
196 AAAGGCACAATAAGAACAAAAAAA
592590 ATTAAAGGCA
Statistics
Matches: 217, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
238 217 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.25
Consensus pattern (238 bp):
CTGTAAGCAAAACACAGAACATTTTGTGGAAAATGCTATCACTAAGCATAAATTACTTATGAATA
TGAAGAAACCAAGTTTATTCTCTAACACTCTGACCGTGCACATAGACAGGTACGCTGTAAGAGTA
AGCACATATGAGTGAGCCTAAAAGTGAGTAAAGACAAGCAAATTTTCATTCTTATATCTAAGATT
AAAGGCACAATAAGAACAAAAAAATTGTTCTCTAACAGGTACG
Found at i:595622 original size:7 final size:7
Alignment explanation
Indices: 595610--595642 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
595600 TCAAAAAGTC
595610 TTCATAT
1 TTCATAT
595617 TTCATAT
1 TTCATAT
595624 TTCATAT
1 TTCATAT
595631 TTCATAT
1 TTCATAT
595638 TTCAT
1 TTCAT
595643 GTCAAAAGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.15, G:0.00, T:0.58
Consensus pattern (7 bp):
TTCATAT
Done.