Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold475
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1773841
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 1 of 12
Found at i:4512 original size:51 final size:52
Alignment explanation
Indices: 4402--4529 Score: 240
Period size: 51 Copynumber: 2.5 Consensus size: 52
4392 CGAAATATGA
*
4402 AAATTTGCCTGCATGTATCGATACATTTCATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
4454 AAATTTGCCTGCATGTATCGATACATTT-ATAGAGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
4505 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
4530 ATGTATCGAT
Statistics
Matches: 75, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
51 47 0.63
52 28 0.37
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTCATAGAGTATCGATACATCTGGGC
Found at i:4535 original size:13 final size:13
Alignment explanation
Indices: 4517--4542 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
4507 ATTTGCCTGC
4517 ATGTATCGATACA
1 ATGTATCGATACA
4530 ATGTATCGATACA
1 ATGTATCGATACA
4543 TTTGAGTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:4621 original size:32 final size:33
Alignment explanation
Indices: 4580--4648 Score: 122
Period size: 32 Copynumber: 2.1 Consensus size: 33
4570 GGCAGTAGCT
4580 TACATTGTATCGATACAAAAC-TTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
*
4612 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAAAACTTTATGTATCGA
4645 TACA
1 TACA
4649 AATCGTTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 20 0.57
33 15 0.43
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (33 bp):
TACATTGTATCGATACAAAACTTTATGTATCGA
Found at i:4622 original size:13 final size:13
Alignment explanation
Indices: 4604--4628 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4594 ACAAAACTTA
4604 TGTATCGATACAT
1 TGTATCGATACAT
4617 TGTATCGATACA
1 TGTATCGATACA
4629 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:5625 original size:58 final size:58
Alignment explanation
Indices: 5555--5805 Score: 312
Period size: 58 Copynumber: 4.3 Consensus size: 58
5545 AGAGGACACG
* * *
5555 GACTTGTCGGCTTTTGAAGGTTGCCACTGATTTATGGGCTTT-GAAAAAGGGTGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAA-GGTGCCACT
* *
5613 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTTGGCTTTGGGAAAAAGGTACCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTT-GGAAAAAGGTGCCACT
* * * * *
5672 GATTTGTGGAC-TTTGAAGGTTGCCATTGACTTGTGGGCTTTGGGAGAAGGGTGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTT-GGAAAAAGGTGCCACT
* * *
5730 GATTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTT-GACAAAGATGCCACT
1 GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGTGCCACT
* *
5786 AACTTGTGGGCTTTTAAAGG
1 GACTTGTGGGCTTTTGAAGG
5806 GTGAGGAATA
Statistics
Matches: 170, Mismatches: 20, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
56 21 0.12
57 7 0.04
58 119 0.70
59 17 0.10
60 6 0.04
ACGTcount: A:0.20, C:0.16, G:0.31, T:0.33
Consensus pattern (58 bp):
GACTTGTGGGCTTTTGAAGGTTGCCACTGACTTGTGGGCTTTGGAAAAAGGTGCCACT
Found at i:5706 original size:27 final size:27
Alignment explanation
Indices: 5555--5799 Score: 213
Period size: 27 Copynumber: 8.5 Consensus size: 27
5545 AGAGGACACG
*
5555 GACTTGTCGGCTTTTGAAGGTTGCCACT
1 GACTTGTGGGC-TTTGAAGGTTGCCACT
* * *
5583 GATTTATGGGCTTTGAAAAAGGGTGCCACT
1 GACTTGTGGGCTTTG---AAGGTTGCCACT
5613 GACTTGTGGGCTTTTGAAGGTTGCCACT
1 GACTTGTGGGC-TTTGAAGGTTGCCACT
* *
5641 GACTTGTTGGCTTTGGGAAAAAGG-TACCACT
1 GACTTGTGGGCTTT--G---AAGGTTGCCACT
* * *
5672 GATTTGTGGACTTTGAAGGTTGCCATT
1 GACTTGTGGGCTTTGAAGGTTGCCACT
*
5699 GACTTGTGGGCTTTGGGAGAAGGGTGCCACT
1 GACTTGTGGGCTTT----GAAGGTTGCCACT
*
5730 GATTTGTGGGCTTTGAAGGTTGCCACT
1 GACTTGTGGGCTTTGAAGGTTGCCACT
* *
5757 GACTTGTGGGCTTTGACAAAGATGCCACT
1 GACTTGTGGGCTTTG--AAGGTTGCCACT
*
5786 AACTTGTGGGCTTT
1 GACTTGTGGGCTTT
5800 TAAAGGGTGA
Statistics
Matches: 177, Mismatches: 24, Indels: 31
0.76 0.10 0.13
Matches are distributed among these distances:
26 4 0.02
27 50 0.28
28 29 0.16
29 25 0.14
30 20 0.11
31 45 0.25
32 4 0.02
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.33
Consensus pattern (27 bp):
GACTTGTGGGCTTTGAAGGTTGCCACT
Found at i:7251 original size:15 final size:12
Alignment explanation
Indices: 7233--7339 Score: 94
Period size: 13 Copynumber: 8.6 Consensus size: 12
7223 TTTCAGACCC
7233 TTTTTGTTGTTGTT
1 TTTTTGTT-TTG-T
7247 GTTTTTGTTTTTGT
1 -TTTTTG-TTTTGT
*
7261 TTTTTGCTTTGT
1 TTTTTGTTTTGT
7273 TTTTTGTTTT-T
1 TTTTTGTTTTGT
*
7284 TGTTT-TTTTGT
1 TTTTTGTTTTGT
7295 TTTTTGCTTTTGT
1 TTTTTG-TTTTGT
*
7308 TTTTT-TTTTAT
1 TTTTTGTTTTGT
*
7319 TTATTTGGTTTTTT
1 TT-TTT-GTTTTGT
7333 TTTTTGT
1 TTTTTGT
7340 GGAGGACGCC
Statistics
Matches: 79, Mismatches: 6, Indels: 17
0.77 0.06 0.17
Matches are distributed among these distances:
10 4 0.05
11 17 0.22
12 19 0.24
13 20 0.25
14 8 0.10
15 9 0.11
16 2 0.03
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.81
Consensus pattern (12 bp):
TTTTTGTTTTGT
Found at i:7262 original size:6 final size:6
Alignment explanation
Indices: 7239--7339 Score: 62
Period size: 6 Copynumber: 15.7 Consensus size: 6
7229 ACCCTTTTTG
* *
7239 TTGTTG TTGTTT TTGTTT TTGTTT TT-TGCT TTGTTTT TTGTTTT TTGTTTTT
1 TTGTTT TTGTTT TTGTTT TTGTTT TTGT-TT TTG-TTT TTG-TTT TTG--TTT
* * *
7291 TTGTTTT TTGCTT TTGTTT TT-TTT TTATTTAT TTGGTTT TTTTTT TTGT
1 TTG-TTT TTGTTT TTGTTT TTGTTT TT-GTT-T TT-GTTT TTGTTT TTGT
7340 GGAGGACGCC
Statistics
Matches: 79, Mismatches: 9, Indels: 14
0.77 0.09 0.14
Matches are distributed among these distances:
5 6 0.08
6 37 0.47
7 23 0.29
8 13 0.16
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.81
Consensus pattern (6 bp):
TTGTTT
Found at i:7306 original size:47 final size:46
Alignment explanation
Indices: 7233--7337 Score: 124
Period size: 47 Copynumber: 2.3 Consensus size: 46
7223 TTTCAGACCC
* * * *
7233 TTTTTGTTGTTGTTGTTTTTGTTTTTGTTTTTTGCTTTGTTT-TTTGT
1 TTTTTGTT-TTTTTGTTTTTGCTTTTGTTTTTT-CTTTATTTATTTGG
*
7280 TTTTTGTTTTTTTGTTTTTTGCTTTTGTTTTTTTTTTATTTATTTGG
1 TTTTTGTTTTTTTG-TTTTTGCTTTTGTTTTTTCTTTATTTATTTGG
7327 TTTTT-TTTTTT
1 TTTTTGTTTTTT
7338 GTGGAGGACG
Statistics
Matches: 51, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
46 17 0.33
47 34 0.67
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (46 bp):
TTTTTGTTTTTTTGTTTTTGCTTTTGTTTTTTCTTTATTTATTTGG
Found at i:7316 original size:40 final size:41
Alignment explanation
Indices: 7234--7337 Score: 110
Period size: 40 Copynumber: 2.6 Consensus size: 41
7224 TTCAGACCCT
* *
7234 TTTTG-TTGTTGTTGTTTTTG-TTTTTGTTTTTTGCTTTGTT
1 TTTTGTTTTTTGTT-TTTTTGTTTTTTGTCTTTTGCTTTGTT
*
7274 TTTTGTTTTTTGTTTTTTTGTTTTTTG-CTTTTG-TTTTTT
1 TTTTGTTTTTTGTTTTTTTGTTTTTTGTCTTTTGCTTTGTT
* *
7313 TTTTATTTATTTGGTTTTTT-TTTTT
1 TTTTGTTT-TTTGTTTTTTTGTTTTT
7338 GTGGAGGACG
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
39 17 0.30
40 26 0.46
41 13 0.23
ACGTcount: A:0.02, C:0.02, G:0.14, T:0.82
Consensus pattern (41 bp):
TTTTGTTTTTTGTTTTTTTGTTTTTTGTCTTTTGCTTTGTT
Found at i:7333 original size:34 final size:34
Alignment explanation
Indices: 7235--7332 Score: 107
Period size: 33 Copynumber: 2.9 Consensus size: 34
7225 TCAGACCCTT
7235 TTTGTTGTTGTTGTTTT-TGTT-TTT-GTTTTTTGC
1 TTTGTT-TT-TTGTTTTATGTTATTTGGTTTTTTGC
* * *
7268 TTTGTTTTTTGTTTTTTGTTTTTTTGTTTTTTGC
1 TTTGTTTTTTGTTTTATGTTATTTGGTTTTTTGC
7302 TTTTGTTTTTT-TTTTAT-TTATTTGGTTTTTT
1 -TTTGTTTTTTGTTTTATGTTATTTGGTTTTTT
7333 TTTTTGTGGA
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
31 7 0.12
32 6 0.10
33 21 0.36
34 14 0.24
35 10 0.17
ACGTcount: A:0.02, C:0.02, G:0.15, T:0.81
Consensus pattern (34 bp):
TTTGTTTTTTGTTTTATGTTATTTGGTTTTTTGC
Found at i:12267 original size:13 final size:13
Alignment explanation
Indices: 12249--12274 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12239 CAATTTTTGG
12249 TGTATCGATACAT
1 TGTATCGATACAT
12262 TGTATCGATACAT
1 TGTATCGATACAT
12275 ACTTGGTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:12287 original size:32 final size:33
Alignment explanation
Indices: 12229--12292 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 33
12219 TACAAGCCAA
**
12229 TGTATCGATACAATTTTTGGTGTATCGATACAT
1 TGTATCGATACAATACTTGGTGTATCGATACAT
*
12262 TGTATCGATAC-ATACTTGGTTTATCGATACA
1 TGTATCGATACAATACTTGGTGTATCGATACA
12293 AGTTTGGCTA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.61
33 11 0.39
ACGTcount: A:0.28, C:0.14, G:0.17, T:0.41
Consensus pattern (33 bp):
TGTATCGATACAATACTTGGTGTATCGATACAT
Found at i:23332 original size:476 final size:474
Alignment explanation
Indices: 22425--26630 Score: 5233
Period size: 476 Copynumber: 8.9 Consensus size: 474
22415 TCTACAGGCG
*** * * * * *
22425 CCATAAACATAGTCTTCTCCCAAGGATACATCTTATTGACGCTGTGGTTTCACAAGAAA-AACTT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGA--T
* * * *
22489 TTTCCTCACCAATTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTA
64 TTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * * * * * ** * * *
22554 ATGATCTTGATTTATTTCGTGATTAGGCATTATAAACACATTCTCCTTTTTAAGATAATTAATAT
128 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
* * * * *
22619 CGATGTTTTTCTTTTGCGTGGAAATCTTTTCTTTGCCATATTTTCCGTTAAATCAAAGTTCATAC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC
* * * *
22684 CTTAAATAAGACATGCATCGATTCTTGTAATAGTCTCCATTTTTTTCAAGATTGGGAAGCCAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA
* * * *
22749 CACATTCCTTTCATTAAGATACATGACATTGATGCTTTGG-GATCGTAAGAAAAGCTTTTGTTTC
323 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTG-TCGCAAGAAAAGCTTTTCTTTC
** * * * * *
22813 CTTCGTTTTTGATAGAATCAAAGTTTAACTCTTAAACAAGACAAACCTAAATATTCTTTCTAATC
387 CACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATC
*
22878 CCCATTCTTTTTAGGATTTGGCA
452 CCCATTCTTTTCAGGATTTGGCA
* *
22901 CCATAAACATAGTCTGCTCATTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGGATT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAA-GGATT
* * * *
22966 TTCACCTCTAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGATACAAACATGGGTTCTCGTAA
65 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
23031 TGATCTTCATTCATTTTGGGATTCGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
129 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
23096 GATGATTTTCTTTTGCATGGAATTCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATACT
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * * *
23161 TTAAATAAGATAAGCATCGATTCTTGTAAGAGTCTCTATTCTTTTCAAGATTGGGAAGCTAAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * * * **
23226 ACATTTCCTTTATTAGGATACCTGACATTGATGCTTTGGGGCCAAAAGAAAAGCTTTTCTTTCCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * * * **
23291 CCATTTTTAAAAGAATCAAAGTGTGTCTTTTAAATAAGACAAAAATAAATACTCATACTAATCCC
389 CCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATCCC
* *
23356 CAATCTTTTC-GGATTAGGCA
454 CATTCTTTTCAGGATTTGGCA
* * *
23376 CTATAAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTAT-GTAAGAAAGGCT
1 CCAT-AAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTT-TCGCAAGAAAGG-A
* * *
23440 TTTCTCCCACCAATTTTTGTAATGTC-AGAGTTTGTACCTCAAATGAGGCAAACATGGGTTCTAG
63 TTT-TCCCACCAATTTTTGTAAAGTCTA-AGTTCGTACCTCAAATGAGACAAACATGGGTTCTAG
* * * * *
23504 TAACGATCTTCATTCATTATGGGATTAAGAACTACAAACGCATTCCCCTC-TCTAGGATAAATGA
126 TAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCAT-TAGGATAAATGA
* * *
23568 CATTGATGATTTTTTTTTGCATGGAAATCTTTTCTTTGCTCTATTTTCCTTT-AAT--AAG----
190 TATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCA
*
23626 -A-C--------G---AGCATCGATTCCCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA
255 TACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA
* * * *
23678 AAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAATCTTTTTTT
320 AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * ** * * *
23743 TCCACTGTTTTTGATTGAATCAATGTTTGTCTCTTACATACGACAAATGTGAATACTTATACTGA
385 TCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAA
* *
23808 TCCCCATTCTTTTCAAGATTGGGCA
450 TCCCCATTCTTTTCAGGATTTGGCA
* *
23833 CCATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGATTT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGA-TT
* * * * * * *
23898 TTCTTCACTAAGTTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAA
65 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * *
23963 GGATCTTCAATCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAAGGATATT
129 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* * * * * *
24028 GATGATTTCCTTTTGAATGGAAATCTTTTCTTTGCCTTGTTTTCCTTTAAATCAAAGTTCTTATC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * ** ** *
24093 TTAAATAAGACAAGCATTGATTCTTGTAACAGTCTCCATTCTTTTCCTGATTATGAAGCCGAAAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * *
24158 ACATTCCCTGCATTAGGATACATGACATTGATGGTTTGGTGTCAG-AAGAAAAGCTTTTCTTTCT
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCC
* * * * * *
24222 ACCGTTTTTGATAGAATCAAAGTTTATCTTTTAAATACGACAAACGTGAATACTCATATTGATCC
388 ACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATCC
*
24287 CCATTCTTTTCAAGA-TTGTGCA
453 CCATTCTTTTCAGGATTTG-GCA
* * * * **
24309 CCATAAACATAGTCTTCTCATTAGGATAC-GCAATATTGATGCTTTAGTTTCGTAGGAAATACAT
1 CCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAA-GGA-
* * *
24373 TTTTCCCACCAATTTTTGTAATGTCTAAGTTCGTACCTCAAATAAGATAAACATGGGTTCTAGTA
63 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* *
24438 ATGATCATCATTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATAT
128 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
* * * *
24503 TGATGATTTTCTTTTGCATGAAAATTTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGCTCATAC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC
* * * *
24568 CTTAAATAAGATAAGCATCGATTCTCGTAACAGTCTCCATTTTTTTCAAGATTAGGAAGCCAAAG
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA
* * * ** *
24633 CACGTTTCCTTCATTAGGATACAAGACATCAATGCTTTGATGTCGCAAGAAAAGCTTTTCTTTCC
323 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * * *
24698 ACCGTTTTTG-TCTGAATCTAAGTTTATCTTTTAAATACGACAAACGTGAATACTCATACTGATC
388 ACCGTTTTTGAT-AGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATC
* * *
24762 CCCATTCTTTTCAAGATTGGGCG
452 CCCATTCTTTTCAGGATTTGGCA
* * * * *
24785 CCATAAACATAGTCTTCTCCTAAGGACACATCATATAGATGCCTTGGTTTCGCAAGAAAGGATTT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGA-TT
* * * * * *
24850 TTCCTCACCAATATTTGTAAAGTTTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAA
65 TTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
24915 TGATCTTCAATCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
129 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* * *
24980 GATGATTTTTTTTTTGCATAGAAATCATTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC
194 GATGA-TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC
* * * * ***
25045 GTTAAATAAGACAAGCATCTGA-TCTCATAACAGTTTCCATTTTTTTTTTGATTGGGAAGCCAAA
258 CTTAAATAAGACAAGCATC-GATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* *
25109 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCCTTC
322 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * ** *
25174 CACTGTTTTTGGTAGAATCAAATTTTGTCTCTTAAATAAGATAAA-AAAGAATACTCCTACTAAT
387 CACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTA-AATACTCATACTAAT
* * *
25238 CCCTAATCTTTT-AGGGATTAGGCA
451 CCCCATTCTTTTCA-GGATTTGGCA
* * *
25262 CCATAAACATAATCTTC-CTATTAGGATACATCATATTGATGCTTTGCTTTCGCAAGAAAGGCTT
1 CCATAAACATAGTCTTCTC-ATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGG--A
* * * * * * * *
25326 TTTTCCCAACAATTTTTTTAATGTCTAAGTTCGTGCCACAAATGAGACAAATAAGGTTTCTAGTA
63 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
*
25391 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTTATTAGGATAAATGATAT
128 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
*
25456 TGATGATTTTCTTTTGCGTGGAAATCTTTTCTTTG--C-----TCCTTTAAATCAAAGTTCATAC
193 TGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATAC
* * *
25514 CTTAAATAAGACAAGCATCGATTCTCGTAGCAGTTTCCATTCTTTTCAAGATTAGGAAGCCAAAA
258 CTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAA
* ** **
25579 CACATTCCATTCATTAGGATACCGGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTTT
323 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
*
25644 ATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACC-AGAATACTCATACTAAT-
388 ACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTA-AATACTCATACTAATC
25707 CCCATTCTTTTCAGGATTTGGCA
452 CCCATTCTTTTCAGGATTTGGCA
* * *
25730 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAACAAATGCATT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAA-GGATT
* * * *
25795 TTCACCTCCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATAAGGCAAACATGGGTTCTAGTAA
65 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
**
25860 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTTTTTAGGATAAATGATATT
129 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* *
25925 GATGATTTTCTTTTGCATGGAAATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATATC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* ** *
25990 TTAAATAAGACAAGCATCGATTTTTATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAATAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * * * *
26055 ATATTCCCTTCATTAGGATACATGAC-TTGATGCTTTTGTGTTGCAAGGAAACCTTTTCTTTTCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * ** *
26119 TCGTTTTTGATAAAATCAAAGTTTATCTCTTAAATAAGACAAACCGGAATACTCATACTAATCAC
389 CCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATCCC
* *
26184 TATTCTTTTTAGGATTTGGCA
454 CATTCTTTTCAGGATTTGGCA
* * * * *
26205 CCATAAACATAGTCTTCTCAATAGGATACATCATATTGATACTTTGGTTTTGCAACAAATGCATT
1 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAA-GGATT
*
26270 TTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
65 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
26335 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
129 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
26400 GATGATTTTCTTTTGCATGGAAATCTTTGCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
194 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * * *
26465 TTAAATAAGCCAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCTAATAC
259 TTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAAC
* * * ** *
26530 ACATTCCCTTCATTAAGATGCAAGACATTGATGCTTTGGTACCGCAAGGAAAGCTTTTCTTTCCA
324 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * *
26595 CCATTTTTGATAGAATCAATGTTTGTCTCTTAAATA
389 CCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATA
26631 CAACAAAAGT
Statistics
Matches: 3236, Mismatches: 425, Indels: 138
0.85 0.11 0.04
Matches are distributed among these distances:
455 3 0.00
456 362 0.11
457 16 0.00
459 4 0.00
464 1 0.00
465 1 0.00
467 5 0.00
468 219 0.07
469 191 0.06
470 1 0.00
473 4 0.00
474 93 0.03
475 486 0.15
476 1429 0.44
477 411 0.13
478 10 0.00
ACGTcount: A:0.30, C:0.18, G:0.14, T:0.37
Consensus pattern (474 bp):
CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGATTT
TCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATG
ATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTT
AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
ATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
GTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACCTAAATACTCATACTAATCCCCA
TTCTTTTCAGGATTTGGCA
Found at i:26371 original size:158 final size:156
Alignment explanation
Indices: 24848--26402 Score: 449
Period size: 158 Copynumber: 9.9 Consensus size: 156
24838 AAGAAAGGAT
* * ** * * * * *
24848 TTTTCCTCACCAATATTTGTAAAGTTTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGT
1 TTTTCC-CTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGT
* * * * *
24913 AATGATCTTCAATCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
65 AATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGATACATGATA
* ** *
24978 TTGATGATTTTTTTTTTGCATAGAAATCA
130 TTGAT-ACTTTGGTTTTGCA-ACAAATCA
** * * * * * * ** *
25007 -TTTCTTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATACGTTAAATAAGACAAGCATCTGATCT
1 TTTTCCCT--CCAATTTT--TGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCT
** ** * * *
25070 CA-TAA-CAGT-TTCCATTTTTTTTTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGAT
62 -AGTAATCA-TCTT-CATTCATTTTAGGATTAGGAA-CTACAAACATATTCTCC-TCATTAGGAT
* * * ** * *
25130 ACATGACATTGATGCTTTGGTGTCACAAGAAAAGC-
122 ACATGATATTGATACTTTGGTTTTGCAA-CAAATCA
* * * * * * * * **
25165 TTTTCCTTCCACTGTTTTTGGTAGAA-TCAAATTTTGT-CTCTTAAATAAGATAAAAAAGAATAC
1 TTTTCCCTCCA--ATTTTT-GTA-AAGTCAAAGTTCGTAC-CTCAAATAAGACAAACATGGGT--
* * * * * * *
25228 TCCTACTAATC--CCT-AATC-TTTTAGGGATTAGGCACCATAAACATAATCTTCCT-ATTAGGA
59 T-CTAGTAATCATCTTCATTCATTTTA-GGATTAGGAACTACAAACATATTC-TCCTCATTAGGA
* * * * * * *
25288 TACATCATATTGATGCTTTGCTTTCGCAAGAAAGGCTT
121 TACATGATATTGATACTTTGGTTTTGCAACAAA-TC-A
** * * * * * * * * *
25326 TTTTCCCAACAATTTTTTTAATGTCTAAGTTCGTGCCACAAATGAGACAAATAAGGTTTCTAGTA
1 TTTTCCCTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGTA
* * * * *
25391 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTTATTAGGATAAATGATAT
66 ATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGATACATGATAT
** ***
25456 TGATGA-TTTTCTTTTGCGTGGAAATC-
131 TGAT-ACTTTGGTTTTGC-AACAAATCA
** * ** * * * * * *
25482 TTTTCTTTGC--TCCTT-TAAA-TCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGT-
1 TTTTCCCTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGTA
* * * * * **
25542 AGCAGT-TTCCATTC-TTTTCAAGATTAGGAAGCCA-AAACACATTC-CATTCATTAGGATACCG
66 ATCA-TCTT-CATTCATTTT-AGGATTAGGAA-CTACAAACATATTCTC-CTCATTAGGATACAT
* * * * * *
25603 GACATTGATGCTTTGGTGTCGCAAGAAAAGC-
126 GATATTGATACTTTGGTTTTGCAA-CAAATCA
** ** * * **
25634 TTTTCTTTTTATCGTTTTTGATAGAA-TCAAAGTT--TATCTCTTAAATAAGACAAACCA-GAAT
1 TTTTCCCTCCA--ATTTTTG-TA-AAGTCAAAGTTCGTA-C-CTCAAATAAGACAAA-CATGGGT
* * * * * * * * * *
25695 ACTCA-TACTAATC-CCATTC-TTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGAT
59 TCT-AGTAATCATCTTCATTCATTTT-AGGATTAGGAACTACAAACATATTCTCCTCATTAGGAT
* *
25757 ACATCATATTGATGCTTTGGTTTTGCAACAAATGCA
122 ACATGATATTGATACTTTGGTTTTGCAACAAAT-CA
* * *
25793 TTTTCACCTCCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATAAGGCAAACATGGGTTCTAGT
1 TTTTC-CCTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGT
* * * ** *
25858 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTTTTTAGGATAAATGATA
65 AATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGATACATGATA
** **
25923 TTGATGA-TTTTCTTTTGCATGGAAATC-
130 TTGAT-ACTTTGGTTTTGCA-ACAAATCA
* * * * * * * ** *
25950 TTTTCCTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATATCTTAAATAAGACAAGCATCGATTTT
1 TTTTCCCT--CCAATTTT--TGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACAT-GGGTTC
* * *
26014 TA-TAA-CAGTCTCCATTC-TTTTCAAGATTGGGAAGC--CAATACATATTC-CCTTCATTAGGA
61 TAGTAATCA-TCTTCATTCATTTT-AGGATTAGGAA-CTACAA-ACATATTCTCC-TCATTAGGA
* * * * * *
26073 TACATGA-CTTGATGCTTTTGTGTTGCAAGGAAA-CC
121 TACATGATATTGATACTTTGGTTTTGCAA-CAAATCA
** * * * * * *
26108 TTTTCTTTTCATCGTTTTTGATAAAATCAAAGTT--TATCTCTTAAATAAGACAAAC-CGGAATA
1 TTTTCCCTCCA--ATTTTTG-TAAAGTCAAAGTTCGTA-C-CTCAAATAAGACAAACATGG-GT-
* * * * * * * * *
26170 CTCATACTAATCA-C-T-ATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCAATAGGAT
59 -TC-TAGTAATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGAT
*
26232 ACATCATATTGATACTTTGGTTTTGCAACAAATGCA
122 ACATGATATTGATACTTTGGTTTTGCAACAAAT-CA
* *
26268 TTTTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGT
1 TTTTC-CCTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGT
* * * *
26333 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
65 AATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGATACATGATA
26398 TTGAT
130 TTGAT
26403 GATTTTCTTT
Statistics
Matches: 1008, Mismatches: 277, Indels: 223
0.67 0.18 0.15
Matches are distributed among these distances:
151 9 0.01
152 91 0.09
153 5 0.00
154 3 0.00
155 14 0.01
156 25 0.02
157 63 0.06
158 398 0.39
159 261 0.26
160 104 0.10
161 27 0.03
162 7 0.01
163 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
TTTTCCCTCCAATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGGTTCTAGTA
ATCATCTTCATTCATTTTAGGATTAGGAACTACAAACATATTCTCCTCATTAGGATACATGATAT
TGATACTTTGGTTTTGCAACAAATCA
Found at i:26442 original size:158 final size:156
Alignment explanation
Indices: 23910--26488 Score: 918
Period size: 159 Copynumber: 16.3 Consensus size: 156
23900 CTTCACTAAG
* * * * * * *
23910 TTTTGTAAAGTCTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAAGGATCTTCAATC
1 TTTTGTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * **
23975 ATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAAGGATATTGATGATTTCCTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTT
* * *
24040 TTGAATGGAAATCTTTTCTTTGCCTTGT
129 TTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * * *
24068 TTTCCTTTAAATCAAAGTTCTTATCTTAAATAAGACAAGCATTGATTCTTGTAA-CAGTCTCCAT
1 TTT--TGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGA-TCTTCAT
** * * * *
24132 TCTTTTCCTGATTATGAAGCC-GAAACACATTC-CCTGCATTAGGATACATGACATTGATGGTTT
63 TCTTTT-GGGATTAGGAA-CCACAAACACATTCTCCT-CATTAGGATACATGATATTGATGATTT
** * * * *
24195 GGTGTCAG-AAGAAAAGCTTTTCTTT-CTACC-GT
125 GGT-TTTGCATGGAAATCTTTTCTTTGC--CCTAT
* * * * * * * **
24227 TTTTGATAGAATCAAAGTTTAT-CTTTTAAATACGACAAACGTGAATACTCA-TATTGATCCCCA
1 TTTTG-TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATGGATTCT-AGTAATGATCTTCA
** * * * * * *** *
24290 TTCTTTTCAAGATT-GTGCACCATAAACATAGTCTTCTCATTAGGATACGCAATATTGATGCTTT
62 TTCTTTT-GGGATTAG-GAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTT
* * * * ** *
24354 AGTTTCGTA-GGAAATACATTT-TTCCCACCAAT
125 GGTTTTGCATGGAAAT-CTTTTCTTTGC-CCTAT
* * * * * * *
24386 TTTTGTAATGTCTAAGTTCGTACCTCAAATAAGATAAACATGGGTTCTAGTAATGATCATCATTC
1 TTTTGTAA-ATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * **
24451 ATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTT
* * *
24516 TTGCATGAAAATTTTTTCTTTGCCTTAT
129 TTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * * *
24544 TTTCCTTTAAATCAAAGCTCATACCTTAAATAAGATAAGCATCGATTCTCGTAA-CAGTCTCCAT
1 TTT--TGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGA-TCTTCAT
* ** * * * * ** *
24608 TTTTTTCAAGATTAGGAAGCCA-AAGCACGTT-TCCTTCATTAGGATACAAGACATCAATGCTTT
63 TCTTTT-GGGATTAGGAA-CCACAAACACATTCTCC-TCATTAGGATACATGATATTGATGATTT
* * * * * * *
24671 GATGTCGCAAGAAAAGCTTTTCTTTCCACCGT-T
125 GGTTTTGCATGGAAATCTTTTCTTTGC-CC-TAT
* * * * * * * * * * **
24704 TTTGTCTGAATCTAAGTTTAT-CTTTTAAATACGACAAACGTGAATACTCA-TACTGATCCCCAT
1 TTT-TGTAAATCAAAGTTCATAC-CTTAAATAAGACAAACATGGATTCT-AGTAATGATCTTCAT
** * ** * * * * * * * * * **
24767 TCTTTTCAAGATTGGGCGCCATAAACATAGTCTTCTCCTAAGGACACATCATATAGATGCCTTGG
63 TCTTTT-GGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGG
* * * * *
24832 TTTCGCAAGAAAGGAT-TTTTC-CT-CACCAAT
127 TTTTGCATGGAA--ATCTTTTCTTTGC-CCTAT
* ** * * * * *
24862 ATTTGTAAAGTTTATGTTCATGCCTCAAATGAGACAAACATGGATTCTAGTAATGATCTTCAATC
1 TTTTGTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * **
24927 ATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTTTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGA-TTTGGT
* *
24992 TTTGCATAGAAATCATTTCTTTGCCCTAT
128 TTTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * *
25021 TTTCCTTTAAATCAAAGTTCATACGTTAAATAAGACAAGCATCTGA-TCTCA-TAA-CAGT-TTC
1 TTT--TGTAAATCAAAGTTCATACCTTAAATAAGACAAACAT-GGATTCT-AGTAATGA-TCTT-
* ** * * *
25082 CATTTTTTTTTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATACATGACATTGATGC
60 CA-TTCTTTTGGGATTAGGAA-CCACAAACACATTCTCC-TCATTAGGATACATGATATTGATGA
* ** * * * * *
25145 TTTGGTGTCACAAGAAAAGCTTTTCCTT-CCACTGT
122 TTTGGTTTTGCATGGAAATCTTTTCTTTGCC-CTAT
* ** * * * * * ** * * *
25180 TTTTGGTAGAATCAAATTTTGT-CTCTTAAATAAGATAAAAAAGAATACTCCTACTAATC-CCTA
1 TTTT-GTA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATGGATTCTAGTAATGATCTTC-A
* * * * * * *
25243 ATCTTTTAGGGATTAGGCACCATAAACATAATCTTCCT-ATTAGGATACATCATATTGATGCTTT
62 TTCTTTT-GGGATTAGGAACCACAAACACATTC-TCCTCATTAGGATACATGATATTGATGATTT
* * * * * *
25307 GCTTTCGCA-AGAAAGGC-TTT-TTTCCCAACAAT
125 GGTTTTGCATGGAAA-TCTTTTCTTTGCC--CTAT
* * * * * ** * * * *
25339 TTTTTTAATGTCTAAGTTCGTGCCACAAATGAGACAAATAAGGTTTCTAGTAATGATCTTCATTC
1 TTTTGTAA-ATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * * **
25404 ATTTTGGGATTAGGAACTACAAACACATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTT
*
25469 TTGCGTGGAAATCTTTTCTTTGCTCC---
129 TTGCATGGAAATCTTTTCTTTGC-CCTAT
* * *
25495 --TT-TAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGT-A-GCAGT-TTCCAT
1 TTTTGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATG-A-TCTT-CAT
** * ** * *
25554 TCTTTTCAAGATTAGGAAGCCA-AAACACATTC-CATTCATTAGGATACCGGACATTGATGCTTT
63 TCTTTT-GGGATTAGGAA-CCACAAACACATTCTC-CTCATTAGGATACATGATATTGATGATTT
* * * * * *** *
25617 GGTGTCGCAAGAAAAGCTTTTCTTT-TTATCGT
125 GGTTTTGCATGGAAATCTTTTCTTTGCCCT-AT
* * * * * *
25649 TTTTGATAGAATCAAAGTTTAT-CTCTTAAATAAGACAAACCA-GAATACTCA-TACTAATC-CC
1 TTTTG-TA-AATCAAAGTTCATAC-CTTAAATAAGACAAA-CATGGATTCT-AGTAATGATCTTC
* * * * * * * * *
25710 ATTCTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTT
61 ATTCTTTT-GGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTT
** ** *
25775 GGTTTTGCA-ACAAATGCATTTTC--ACCTCCAAT
125 GGTTTTGCATGGAAAT-C-TTTTCTTTGC-CCTAT
* ** * * *
25807 TTTTGTAAAGTCTAAGTTTGTACCTCAAATAAGGCAAACATGGGTTCTAGTAATGATCTTCATTC
1 TTTTGTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* ** * **
25872 ATTTTGGGATTAGGAACTACAAACACATTCTCCTTTTTAGGATAAATGATATTGATGATTTTCTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTT
*
25937 TTGCATGGAAATCTTTTCCTTGCCCTAT
129 TTGCATGGAAATCTTTTCTTTGCCCTAT
* * * * * * *
25965 TTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATTTTTA-TAA-CAGTCTCCA
1 TTT--TGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGA-TTCTAGTAATGA-TCTTCA
** * * * * *
26028 TTCTTTTCAAGATTGGGAAGCCA-ATACATATTC-CCTTCATTAGGATACATGA-CTTGATGCTT
62 TTCTTTT-GGGATTAGGAA-CCACAAACACATTCTCC-TCATTAGGATACATGATATTGATGATT
* * * * * * *
26090 TTGTGTTGCAAGGAAACCTTTTCTTT-TCATCGT
124 TGGTTTTGCATGGAAATCTTTTCTTTGCCCT-AT
* * * *
26123 TTTTGATAAAATCAAAGTTTAT-CTCTTAAATAAGACAAAC-CGGAATACTCATACTAATCA-C-
1 TTTTG-T-AAATCAAAGTTCATAC-CTTAAATAAGACAAACATGG-AT--TC-TAGTAATGATCT
* * * * * * * * *
26184 T-ATTCTTTTTAGGATTTGGCACCATAAACATAGTCTTCTCAATAGGATACATCATATTGAT-AC
59 TCATTC-TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGA-
** ** *
26247 TTTGGTTTTGCA-ACAAATGCATTTTC--ACCTCCAAT
122 TTTGGTTTTGCATGGAAAT-C-TTTTCTTTGC-CCTAT
* * * * *
26282 TTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTC
1 TTTTGTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTC
* * **
26347 ATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTT
65 -TTTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTT
*
26412 TTGCATGGAAATCTTTGCTTTGCCCTAT
129 TTGCATGGAAATCTTTTCTTTGCCCTAT
* * * *
26440 TTTCCTTTAAATCAAAGTTCATACCTTAAATAAGCCAAGCATCGATTCT
1 TTT--TGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCT
26489 CATAACAGTC
Statistics
Matches: 1741, Mismatches: 520, Indels: 319
0.67 0.20 0.12
Matches are distributed among these distances:
150 1 0.00
151 9 0.01
152 93 0.05
153 5 0.00
154 2 0.00
155 7 0.00
156 11 0.01
157 79 0.05
158 652 0.37
159 719 0.41
160 142 0.08
161 19 0.01
162 2 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (156 bp):
TTTTGTAAATCAAAGTTCATACCTTAAATAAGACAAACATGGATTCTAGTAATGATCTTCATTCT
TTTGGGATTAGGAACCACAAACACATTCTCCTCATTAGGATACATGATATTGATGATTTGGTTTT
GCATGGAAATCTTTTCTTTGCCCTAT
Found at i:27082 original size:13 final size:13
Alignment explanation
Indices: 27064--27089 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
27054 TACAGCAAGT
27064 ATGTATCGATACA
1 ATGTATCGATACA
27077 ATGTATCGATACA
1 ATGTATCGATACA
27090 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:29601 original size:13 final size:13
Alignment explanation
Indices: 29583--29608 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
29573 TACAGCAAGT
29583 ATGTATCGATACA
1 ATGTATCGATACA
29596 ATGTATCGATACA
1 ATGTATCGATACA
29609 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:32120 original size:13 final size:13
Alignment explanation
Indices: 32102--32127 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
32092 TACAGCAAGT
32102 ATGTATCGATACA
1 ATGTATCGATACA
32115 ATGTATCGATACA
1 ATGTATCGATACA
32128 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:34395 original size:476 final size:474
Alignment explanation
Indices: 33504--36749 Score: 3771
Period size: 476 Copynumber: 6.9 Consensus size: 474
33494 AAACATAAGC
* * *
33504 ATCTTTTCTTTGCCCTATTTTCCTTTAAATTAAAGTTCATACCTTAAATATGATAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
** * * * * * *
33569 CTTGTAACAATCTTCATTCTTTTCAAGATTGGGAAGCCAATACATATTCCTTTCATTAGGACACA
66 CTCATAACCATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * ** *
33634 TGACATTAATGCTTTGGGGCCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * *
33699 TTGTCTCTTAAATAAGACAAAATGAATACTCATACTAATCCCCAATCTTTTGCGGATTAGGCACC
196 TTGTCTCTTAAATAAGAAAAAATGAATACTCATACTAATCCCCATTCTTTT-AGGATTTGGCACC
* * * * * *
33764 ACAAACATAGTCTTCTCGTTATGATACATCACATTGATGGTTTGGTTTCGCAAAAAAGGCTTTTT
260 ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTT
* * * *
33829 TCTCACCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAACG
325 TCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATG
*
33894 ATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCCCATTAGGATAAATGATATTGA
390 ATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGA
33959 TGATTTTCTTTTGCATGGAA
455 TGATTTTCTTTTGCATGGAA
* * * *
33979 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAATTTCATACCTTAAATAAGCCAAGCATCAAAT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * *** *
34044 GTCATAACCATTTCCATTCTTTTTTTGATTGGTAAGCCAAAACACATTCCCTTCATTAGGATACA
66 CTCATAACCATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * * *
34109 TGACATTGATACTTTGGTGTCACAAGAAAAGCTTTTCCTTCCACCGTTTTTGGTAGAATCAAAAT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * ** * * *
34174 TTGTCTCTTAAATAAAATAAAAATGAATACTCGTACTAATCCTTAATCTTTTAGGGAATAGGCAC
196 TTGTCTCTTAAATAAGA-AAAAATGAATACTCATACTAATCCCCATTCTTTTA-GGATTTGGCAC
* * * * *
34239 CATAAACATAATCTTCTTATTAGGATACATCATATGGATGCTTTGCTTTCGCAGGAAAGGCTTTT
259 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* ** * *
34304 TTCCCAACAATTTTTGTATTGTCTAAGTTCGTACCACAAATGAGACAAACAAGGGTTCTAGTAAT
324 TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAAT
* *
34369 GATCTTCATTCATTTTGGGATTAGGAACTACAAGCACATTCTCCTTATTAGGATAAATGATATTG
389 GATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTG
34434 ATGATTTTCTTTTGCATGGAA
454 ATGATTTTCTTTTGCATGGAA
* *
34455 ATCTTTTCTTTG--C-----TCCTTTAAATCAAAGTTAATACCTTAAATAAGACAAGCGTCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* ** * *
34513 CTCATAACAATCTCCATTCTTTTCTTGATTGGGATGCCAAAACAAATTCCCTTCATTAGGATACA
66 CTCATAACCATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * * * * *
34578 TGACATTGATGCTTTGCTGTCTCAAGAAGAGCTTTTCTTTCCATCGTTTTCGATTGAATCTAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* ** * * * *
34643 TTGTCTCTTAAAGACA-ACAAACGTGAATACTCATACTGATCCCTATTCTTTTCAAGATTGGGCA
196 TTGTCTCTTAAATA-AGA-AAAAATGAATACTCATACTAATCCCCATTCTTTT-AGGATTTGGCA
*** * * * *
34707 CCATAAACATAGTCTTCTCCCAAGGACACATCACATTGATGCCTTGGTTTAGCAAGAAAGGCTTT
258 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * * *
34772 TTCCCCACCAATTTTTGTAAAGTC-AATGTTCATGCCTCAAATGATACAAACGTGGATTCTAGTA
323 TTTCCCACCAATTTTTGTAAAGTCTAA-GTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * * * * * * * *
34836 ATGATCTTGATTAATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATAATTGATTT
387 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
*
34901 TGATG-TTTTCCTTTTGCATGAAA
452 TGATGATTTT-CTTTTGCATGGAA
*
34924 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTCCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
34989 CTCGT-AGCAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCTTTCATTAGGACAC
66 CTCATAACCA-TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* * *
35053 CTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATCAAAG
130 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * * *
35118 TTTATCTCTTAAATAAGACAAACTGGAATACTCATACTGATCCCCATTATTTTCTGGATTTGGCA
195 TTTGTCTCTTAAATAAGAAAAAAT-GAATACTCATACTAATCCCCATTCTTTT-AGGATTTGGCA
* * * * *
35183 CCGTAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAACAAATGC-AT
258 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * *
35247 TTTCACCTCCAATTTTTGTAAAGTCTAAGTTTGTACCTAAAAAT-AGACAAACGTGGGTTCTAGT
323 TTTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCT-CAAATGAGACAAACATGGGTTCTAGT
*
35311 AATGATCTTCATTCATTTTGGGATTAGGAACAACAAACACATTCTCCTCATTAGGATAAATGATA
386 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
*
35376 TTGTTGATTTTCTTTTGCATGGAA
451 TTGATGATTTTCTTTTGCATGGAA
* *
35400 ATCTTTTCCTT-CCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * * *
35464 CTTATCA-TAGTCTCCACTT-TTTCCAAGATGGGGAAGCCAATACACATTCCCTTCATTAGGATC
66 CTCATAACCA-TCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATA
* * * * * *
35527 CATGACATTGACGCTTTTGTGTCGCAAGGAAACCTTTTCTTTTCACCGTTTTTGATAAAATCAAA
129 CATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA
* * ** **
35592 GTTTATCTCTTAAATAAGACAAACCGAAATACTCATACTAATCCCCATTCTTTTCAGGATTTCAC
194 GTTTGTCTCTTAAATAAGAAAAAATG-AATACTCATACTAATCCCCATTCTTTT-AGGATTTGGC
* * * * * *
35657 ACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATTCTTTGGTTTTGCAACAAATGC-A
257 ACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTT
* *
35721 TTTTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAATGAGACAAACATGGGTTCTAGT
322 TTTTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGT
35786 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
386 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
*
35851 TTGATGATTTTCTTTTTCATGGAA
451 TTGATGATTTTCTTTTGCATGGAA
35875 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
35940 CTCATAA-CAGTCTCCATTCTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTCATTAAGATGC
66 CTCATAACCA-TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* * * * * *
36004 AAGACATTGATGTTTTGGTGCCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATG
130 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * * * *
36069 TTTGTCTCTTAAATACGACAAAAGTGAATACTCATATTGATCCCCATTCTTTTCAAGATTGGGCG
195 TTTGTCTCTTAAATAAGA-AAAAATGAATACTCATACTAATCCCCATTCTTTT-AGGATTTGGCA
* * * *
36134 CTATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGCAAGAAAGGC-TT
258 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * * * *
36198 TTTCCTCCCCAATTTTTGTAAAGTGTATGTTCATGCCTCAAATGAGACAAACGTGGATTCTAGTA
323 TTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * * * * * * *
36263 ATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTTCTCTTTATGATACATGATAC
387 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
* * **
36328 TGAT-TTTTTTTTTTAGCATCAAA
452 TGATGATTTTCTTTT-GCATGGAA
* * * * * *
36351 ACCTTTTCTTTGCCCTGTTTTCCTATAAATTAAAGTTCATACCCTAAATAAGACATGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* *
36416 CTCATAA-CAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCATTAGGATAC
66 CTCATAACCA-TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* * *
36480 AAGCCATTGATGC--T-GT-T----------G------TTTCCATCGTTTTTGATAGAATCAAAG
130 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * ** * *
36525 TTTATCTCTTAAATAATACAAACTTGAATACTCATACT-AT--GC--T-TTTCAGGATTTGGCAC
195 TTTGTCTCTTAAATAAGA-AAAAATGAATACTCATACTAATCCCCATTCTTTTAGGATTTGGCAC
* * * * *
36584 CATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAATGC-ATT
259 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* ** * * * *
36648 TTCACCTCTGATTTTTGTAAAGTTTAAGTTCGTACCTCAAATGAAAGAAACAAGGGTTCTAGTAA
324 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
36713 TGATCTTCATTCATTTTAGGATTAGGAACTACAAACA
388 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACA
36750 TAAGCATCTT
Statistics
Matches: 2392, Mismatches: 349, Indels: 86
0.85 0.12 0.03
Matches are distributed among these distances:
449 148 0.06
450 4 0.00
451 1 0.00
453 1 0.00
455 2 0.00
456 56 0.02
462 1 0.00
468 6 0.00
469 385 0.16
470 2 0.00
471 1 0.00
473 2 0.00
474 7 0.00
475 628 0.26
476 1134 0.47
477 14 0.01
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (474 bp):
ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
CTCATAACCATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGAAAAAATGAATACTCATACTAATCCCCATTCTTTTAGGATTTGGCACCA
TAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTTTT
CCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGA
TCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGAT
GATTTTCTTTTGCATGGAA
Found at i:35366 original size:158 final size:154
Alignment explanation
Indices: 34741--35962 Score: 438
Period size: 159 Copynumber: 7.7 Consensus size: 154
34731 GACACATCAC
* * * * * * * * *
34741 ATTGATGCCTTGGTTTAGCAAGAAAGGCTTTTTCCCCACCAATTTTTGTAAAGTCAATGTTCATG
1 ATTGATGCTTTGGTTTTGCAACAAA-TCATTTTCACCTCCAATTTTTGTAAAGTCAAAGTTCATA
* * * * ** * * *
34806 CCTCAAATGATACAAACGTGGATTCTAGTAATGATCTTGATTAATTTT-GTGATTAGGCACTATA
65 CCTTAAATAAGACAAACATGGATTCTA-TAATGATCTCCATT-CTTTTAG-GATTAGGAAC-ACA
* * *
34870 AAAACATTCTCCTCTTTAAGATA-ATTGAT
126 AACACATTCTCCTCATTAGGATACA-TGAT
* * ** ** * *
34899 TTTGATGTTTTCCTTTTGCATGA-AAATC-TTTTC-TTTGCCCTATTTTCCTTTAAA-TCAAAGT
1 ATTGATGCTTTGGTTTTGCA--ACAAATCATTTTCACCT--CCAATTTT--TGTAAAGTCAAAGT
* * * * *
34960 CCATACCTTAAATAAGACAAGCATCGATTCTCGT-A-GCAGTCTCCATTCTTTTCAAGATTAGGA
60 TCATACCTTAAATAAGACAAACATGGATTCT-ATAATG-A-TCTCCATTCTTTT-AGGATTAGGA
* * * *
35023 AGC-CAAAACACATTC-CTTTCATTAGGACACCTGAC
121 A-CAC-AAACACATTCTC-CTCATTAGGATACATGAT
* * * * ** * *
35058 ATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTC-TTTCTATCGTTTTTGATAGAA-TCAAAGTT
1 ATTGATGCTTTGGTTTTGCAA-CAAATCATTTTCACCTCCA--ATTTTTG-TA-AAGTCAAAGTT
* * * * * * * *
35120 TAT-CTCTTAAATAAGACAAAC-TGGAATACTCATACTGATCCCCATTATTTTCTGGATTTGGCA
61 CATAC-CTTAAATAAGACAAACATGG-ATTCT-ATAATGATCTCCATTCTTTT-AGGATTAGGAA
* * * *
35183 C-CGTAAACATAGTCTTCTCATTAGGATACATCAT
122 CAC--AAACACATTCTCCTCATTAGGATACATGAT
* **
35217 ATTGATGCTTTGGTTTTGCAACAAATGCATTTTCACCTCCAATTTTTGTAAAGTCTAAGTTTGTA
1 ATTGATGCTTTGGTTTTGCAACAAAT-CATTTTCACCTCCAATTTTTGTAAAGTCAAAGTTCATA
* * * * *
35282 CC-TAAAAATAGACAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACAACA
65 CCTTAAATA-AGACAAACATGGATTCTA-TAATGATCTCCATTC-TTTTAGGATTAGGAAC-ACA
*
35346 AACACATTCTCCTCATTAGGATAAATGAT
126 AACACATTCTCCTCATTAGGATACATGAT
* * ** ** * * *
35375 ATTGTTGATTTTCTTTTGCATGGAAATC-TTTTC-CTTCCCTATTTTCCTTTAAA-TCAAAGTTC
1 ATTGATGCTTTGGTTTTGCA-ACAAATCATTTTCACCT-CCAATTTT--TGTAAAGTCAAAGTTC
* * * * * * **
35437 ATATCTTAAATAAGACAAGCATCGATTCTTATCAT-AGTCTCCACTT-TTTCCAAGATGGGGAAG
62 ATACCTTAAATAAGACAAACATGGATTC-TATAATGA-TCTCCA-TTCTTT-TAGGATTAGGAA-
* *
35500 C-CAATACACATTC-CCTTCATTAGGATCCATGAC
122 CACAA-ACACATTCTCC-TCATTAGGATACATGAT
* * * * * * *** ** * *
35533 ATTGACGCTTTTGTGTCGCAAGGAAA-CCTTTTCTTTTCACCGTTTTTGATAAAATCAAAGTTTA
1 ATTGATGCTTTGGTTTTGCAA-CAAATCATTTTCACCTC-CAATTTTTG-TAAAGTCAAAGTTCA
* * * * * * * *
35597 T-CTCTTAAATAAGACAAAC-CGAAATACTCATACTAATCCCCATTCTTTTCAGGATTTCA-CAC
63 TAC-CTTAAATAAGACAAACATG-GATTCT-ATAATGATCTCCATTCTTTT-AGGA-TT-AGGAA
* * * *
35659 CATAAACATAGTCTTCTCATTAGGATACATGAT
122 CACAAACACATTCTCCTCATTAGGATACATGAT
* * *
35692 ATTGATTCTTTGGTTTTGCAACAAATGCATTTTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTA
1 ATTGATGCTTTGGTTTTGCAACAAAT-CATTTTCACCTCCAATTTTTGTAAAGTCAAAGTTCATA
* * * *
35757 CCTTAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAA
65 CCTTAAATAAGACAAACATGGATTCTA-TAATGATCTCCATTC-TTTTAGGATTAGGAAC-ACAA
*
35822 ACACATTCTCCTCATTAGGATAAATGAT
127 ACACATTCTCCTCATTAGGATACATGAT
* ** * ** ** * *
35850 ATTGATGATTTTCTTTTTCATGGAAATC-TTTTC-TTTGCCCTATTTTCCTTTAAA-TCAAAGTT
1 ATTGATGCTTTGGTTTTGCA-ACAAATCATTTTCACCT--CCAATTTT--TGTAAAGTCAAAGTT
* * *
35912 CATACCTTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCATTCTTTT
61 CATACCTTAAATAAGACAAACATGGATTCT-ATAATGA-TCTCCATTCTTTT
35963 CAAGGTTGGG
Statistics
Matches: 777, Mismatches: 206, Indels: 162
0.68 0.18 0.14
Matches are distributed among these distances:
156 4 0.01
157 50 0.06
158 316 0.41
159 369 0.47
160 34 0.04
161 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.13, T:0.37
Consensus pattern (154 bp):
ATTGATGCTTTGGTTTTGCAACAAATCATTTTCACCTCCAATTTTTGTAAAGTCAAAGTTCATAC
CTTAAATAAGACAAACATGGATTCTATAATGATCTCCATTCTTTTAGGATTAGGAACACAAACAC
ATTCTCCTCATTAGGATACATGAT
Found at i:35956 original size:951 final size:946
Alignment explanation
Indices: 33504--36749 Score: 3911
Period size: 951 Copynumber: 3.4 Consensus size: 946
33494 AAACATAAGC
* * * *
33504 ATCTTTTCTTTGCCCTATTTTCCTTTAAATTAAAGTTCATACCTTAAATATGATAAGCATCGATT
1 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
** * * * * *
33569 CTTGTAACAATCTTCATTCTTTTCAAGATTGGGAAGCCAATACATATTCCTTTCATTAGGACACA
66 CTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * *
33634 TGACATTAATGCTTTGGGGCCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGT
131 TGACATTGATGCTTTGTGTCC--AAG-AAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* ** * *
33699 TTGTCTCTTAAATAAGACAAAATGAATACTCATACTAATCCCCAATCTTTTGC-GGATTAGGCAC
193 TTATCTCTTAAATAAGACAAACCGAATACTCATACTAATCCCCATTCTTTT-CAGGATTTGGCAC
* * * * * *
33763 CACAAACATAGTCTTCTCGTTATGATACATCACATTGATGGTTTGGTTTCGCAAAAAAGGCTTTT
257 CATAAACATAGTCTTCTCGTTAGGATACATCACATTGATGCTTTGGTTTTGCAAGAAAGGC-ATT
* * *
33828 TTC-TCACCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
321 TTCACCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* *
33892 CGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCCCATTAGGATAAATGATATT
386 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
33957 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAATTTCATACC
451 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * * * * ***
34022 TTAAATAAGCCAAGCATCAAATGTCATAACCA-TTTCCATTCTTTTTTTGATTGGTAAGCCAAAA
516 TTAAATAAGACAAGCATCGATTCTCATAA-CAGTCTCCATTCTTTTCAAGATTGG-AAGCCAAAA
* * *
34086 CACATTCCCTTCATTAGGATACATGACATTGATACTTTGGTGTCACAAGAAAAGCTTTTCCTTCC
579 CACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* * * * * *
34151 ACCGTTTTTGGTAGAATCAAAATTTGTCTCTTAAATAAAATAAAAAT-GAATACTCGTACTAATC
644 ACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAAT--AAGACAAATGGAATACTCATACTGATC
** * * * * *
34215 CTTAATCTTTT-AGGGAATAGGCACCATAAACATAATCTTCTTATTAGGATACATCATATGGATG
707 CCCATTCTTTTCA-GGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATG
* * * **
34279 CTTTGCTTTCGCAGGAAAGGCTTTTTTCCCAACAATTTTTGTATTGTCTAAGTTCGTACC-ACAA
771 CTTTGGTTTCGCAAGAAAGGC-TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTACAA
** *
34343 ATGAGACAAACAAGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAGCACAT
835 ATGAGACAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACAT
* *
34408 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAA
900 TCTCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCATGGAA
* * *
34455 ATCTTTTCTTTG--C-----TCCTTTAAATCAAAGTTAATACCTTAAATAAGACAAGCGTCGATT
1 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
** * *
34513 CTCATAACAATCTCCATTCTTTTCTTGATTGGGATGCCAAAACAAATTCCCTTCATTAGGATACA
66 CTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * *
34578 TGACATTGATGCTTTGCTGTCTCAAGAAGAGCTTTTCTTTCCATCGTTTTCGATTGAATCTAAGT
131 TGACATTGATGCTTTG-TGTC-CAAGAA-AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * * * *
34643 TTGTCTCTTAAAGACA-ACAAACGTGAATACTCATACTGATCCCTATTCTTTTCAAGATTGGGCA
193 TTATCTCTTAAATA-AGACAAAC-CGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCA
*** * * * *
34707 CCATAAACATAGTCTTCTCCCAAGGACACATCACATTGATGCCTTGGTTTAGCAAGAAAGGCTTT
256 CCATAAACATAGTCTTCTCGTTAGGATACATCACATTGATGCTTTGGTTTTGCAAGAAAGGCATT
* * * * * *
34772 TTCCCCACCAATTTTTGTAAAGTC-AATGTTCATGCCTCAAATGATACAAACGTGGATTCTAGTA
321 TTCACCACCAATTTTTGTAAAGTCTAA-GTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * * * * * * * *
34836 ATGATCTTGATTAATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATAATTGATTT
385 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
* *
34901 TGATG-TTTTCCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTCCATA
450 TGATGATTTT-CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATA
* *
34965 CCTTAAATAAGACAAGCATCGATTCTCGTAGCAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAA
514 CCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT-GGAAGCCAAA
* * *
35030 ACACATTCCTTTCATTAGGACACCTGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
578 ACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
35095 TATCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGACAAACTGGAATACTCATACTGATC
643 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-TGGAATACTCATACTGATC
* * * *
35160 CCCATTATTTTCTGGATTTGGCACCGTAAACATAGTCTTCTCATTAGGATACATCATATTGATGC
707 CCCATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGC
* * * * * * *
35225 TTTGGTTTTGCAACAAATGCATTTTCACCTCCAATTTTTGTAAAGTCTAAGTTTGTACCTAAAAA
772 TTTGGTTTCGCAAGAAAGGCTTTTTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTACAAA
*
35290 T-AGACAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACAACAAACACATT
836 TGAGACAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATT
35354 CTCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCATGGAA
901 CTCCTCATTAGGATAAATGATATTGTTGATTTTCTTTTGCATGGAA
*
35400 ATCTTTTCCTT-CCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * * * *
35464 CTTATCATAGTCTCCACTT-TTTCCAAGATGGGGAAGCCAATACACATTCCCTTCATTAGGATCC
66 CTCATAACAATCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* * * *
35528 ATGACATTGACGCTTTTGTGTCGCAAGGAAACCTTTTCTTTTCACCGTTTTTGATAAAATCAAAG
130 ATGACATTGATGC-TTTGTGTC-CAA-GAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
**
35593 TTTATCTCTTAAATAAGACAAACCGAAATACTCATACTAATCCCCATTCTTTTCAGGATTTCACA
192 TTTATCTCTTAAATAAGACAAACCG-AATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCA
* * * * * *
35658 CCATAAACATAGTCTTCTCATTAGGATACATGATATTGATTCTTTGGTTTTGCAACAAATGCATT
256 CCATAAACATAGTCTTCTCGTTAGGATACATCACATTGATGCTTTGGTTTTGCAAGAAAGGCATT
* *
35723 TTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTTAAATGAGACAAACATGGGTTCTAGTAA
321 TTCACCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
35788 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
386 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
35853 GATGATTTTCTTTTTCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
451 GATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACC
* * *
35918 TTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCTAATAC
516 TTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATT-GGAAGCCAAAAC
* * * * * *
35983 ACATTCCCTTCATTAAGATGCAAGACATTGATGTTTTGGTGCCGCAAGGAAAGCTTTTCTTTCCA
580 ACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA
* * * * *
36048 CCATTTTTGATAGAATCAATGTTTGTCTCTTAAATACGACAAAAGTGAATACTCATATTGATCCC
645 CCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATG-GAATACTCATACTGATCCC
* * * * * * *
36113 CATTCTTTTCAAGATTGGGCGCTATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCT
709 CATTCTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTT
* * * * *
36178 TGGTTTCGCAAGAAAGGCTTTTTCCTCCCCAATTTTTGTAAAGTGTATGTTCATGCCT-CAAATG
774 TGGTTTCGCAAGAAAGGCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTACAAATG
* * * * *
36242 AGACAAACGTGGATTCTAGTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCT
838 AGACAAACGTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCT
* * * * * * **
36307 TCTCTTTATGATACATGATACTGATT--TTTTTTTTTAGCATCAAA
903 CCTCATTAGGATAAATGATATTG-TTGATTTTCTTTT-GCATGGAA
* * * * * * *
36351 ACCTTTTCTTTGCCCTGTTTTCCTATAAATTAAAGTTCATACCCTAAATAAGACATGCATCGATT
1 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * *
36416 CTCATAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCATTAGGATACA
66 CTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * *
36481 AGCCATTGATGC--TGT-T--------G------TTTCCATCGTTTTTGATAGAATCAAAGTTTA
131 TGACATTGATGCTTTGTGTCCAAGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTA
* * *
36529 TCTCTTAAATAATACAAACTTGAATACTCATAC---T----ATGCTTTTCAGGATTTGGCACCAT
196 TCTCTTAAATAAGACAAAC-CGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCAT
* * *
36587 AAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGGTTTTGCAAGAAATGCATTTTCA
260 AAACATAGTCTTCTCGTTAGGATACATCACATTGATGCTTTGGTTTTGCAAGAAAGGCATTTTCA
* ** * * * *
36652 CCTCTGATTTTTGTAAAGTTTAAGTTCGTACCTCAAATGAAAGAAACAAGGGTTCTAGTAATGAT
325 CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGAT
*
36717 CTTCATTCATTTTAGGATTAGGAACTACAAACA
390 CTTCATTCATTTTGGGATTAGGAACTACAAACA
36750 TAAGCATCTT
Statistics
Matches: 1975, Mismatches: 282, Indels: 102
0.84 0.12 0.04
Matches are distributed among these distances:
925 173 0.09
929 1 0.00
932 57 0.03
933 1 0.00
943 8 0.00
944 183 0.09
945 610 0.31
946 9 0.00
948 1 0.00
949 4 0.00
950 16 0.01
951 786 0.40
952 126 0.06
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (946 bp):
ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
CTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGTGTCCAAGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTA
TCTCTTAAATAAGACAAACCGAATACTCATACTAATCCCCATTCTTTTCAGGATTTGGCACCATA
AACATAGTCTTCTCGTTAGGATACATCACATTGATGCTTTGGTTTTGCAAGAAAGGCATTTTCAC
CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATC
TTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
TTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAA
TAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGAAGCCAAAACACATTC
CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTT
TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAATGGAATACTCATACTGATCCCCATTCTT
TTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTC
GCAAGAAAGGCTTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTACAAATGAGACAAAC
GTGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTA
GGATAAATGATATTGTTGATTTTCTTTTGCATGGAA
Found at i:37925 original size:476 final size:475
Alignment explanation
Indices: 36755--39527 Score: 3314
Period size: 476 Copynumber: 5.9 Consensus size: 475
36745 AAACATAAGC
* *
36755 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATATGATAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
36820 CTCATAACAATCTTCATTCTTTTCAAGATTGGGAAGCCAATACATATTCCTTTCATTAGGACACA
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCTTTCATTAGGATACA
* * ** * *
36885 TGACATTGATGCTTTGGGGCCAAAAGAAAAGCTTTTCTCTCCACCGTTTTTAATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
** * * * * *
36950 TTGTCTCTTAAATAAGACAAAAATGAATACTTATACTAATCCCCAATCTTTTGC-GGATTAGGCA
196 TTGTCTCTTAAATAAGAC-AAACGGAATACTCATACTGATCCCCATTCTTTT-CAAGATTGGGCA
* * * * *
37014 CCACAAACATAGTCTTCTCATTAGGATACATCACATTGATGGTTTGGTTTCGCAAGAAAGGGTTT
259 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAGCAAGAAAGGCTTT
* * * *
37079 TTTCTCACCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
324 TTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * *
37144 CGATCTTCATTCATTTTATGATTAGGAACTACAAACACATTCTCCGCATTAGGATAAATGATATT
389 TGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
37209 GATGATTTTCTTTTGCATGAAA
454 GATGATTTTCTTTTGCATGAAA
*
37231 ATCTTTTCTTTG--C-----TCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* ** *
37289 CTCATAACAATCTCCATTCTTTTCTTGATTGGGATGCCAAAACACATTCCTTTCATTAGGATACA
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCTTTCATTAGGATACA
* * * * * * *
37354 TGACATTGATGCTTTGCTGTCTCAAGAAGAGCTTTTCTTTCCATCGTTTTCGATTGAATCTAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * *
37419 TTGTCTCTTAAATATGACAAACGTGAATACTCGTACTGATCCCTATTCTTTTCAAGATTGGGCAC
196 TTGTCTCTTAAATAAGACAAACG-GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCAC
*** * * *
37484 CATAAACATAGTCTTCTCCCAAGGACACATCACATTGATGCCTTGGTTTAGCAAGAAAGGCTTTT
260 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAGCAAGAAAGGCTTTT
* * * *
37549 TCCCCACCAATTTTTGTAAAGTC-AATGTTCATGCCTCAAATGAGACAAACGTGGATTCTAGTAA
325 TCCCCACCAATTTTTGTAAAGTCTAA-GTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * * * * * * * *
37613 TGATCTTGATTAATTTTGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATAATTGATTTT
389 TGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
37678 GATG-TTTTCCTTTTGCATAAAA
454 GATGATTTT-CTTTTGCATGAAA
*
37700 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTCCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
37765 CTCGTAGCAGTCTCCATTCTTTGCAAGATTAGGAAGCCAAAACACATTCCTTTCATTAGGATACC
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCTTTCATTAGGATACA
* *
37830 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * ** *
37895 TTATCTCTTAAATAAGATAAACCGGAATACTCATACTGATCCCCATTATTTTCTGGATTTGGCAC
196 TTGTCTCTTAAATAAGACAAA-CGGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCAC
* * * * *
37960 CGTAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAACAAATGCATTT
260 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAGCAAGAAAGGCTTTT
* * *
38025 TCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTAAAATGAGACAAACATGGGTTCTAGTAAT
325 TCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAAT
* *
38090 GATCTTCATTCATTTTGGGATTAGGAACAACAAACACATTCTCCTCATTAGGATAAATGATATTG
390 GATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTG
*
38155 ATGATTTTCTTTTGCATGGAA
455 ATGATTTTCTTTTGCATGAAA
* *
38176 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * * * * *
38241 CTTATCATAGTCTCCACTCTTTCCATGATTGGGAAGCCAATACACATTCCCTTCATTAGGATCCA
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCTTTCATTAGGATACA
** * * * * * *
38306 TGACATTGACACTTTTGTGTCGCAAGGAAACCTTTCCTTTTCACCGTTTTTGATAAAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * ** * * **
38371 TTATCTCCTAAATAAGACAAACCAAAATACTCATACTAATCCCCATTCCTTTCAAGATTTCGCAC
196 TTGTCTCTTAAATAAGACAAA-CGGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCAC
* * * * * *
38436 CATAAACATAGTCTACTCATTAGGATACA-CGATATTGATTCTTTGGTTTTGCAACAAATGCATT
260 CATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTAGCAAGAAAGGCTTT
* *
38500 TTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
324 TTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
38565 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
389 TGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* *
38630 GATGAATTTCTTTTGCATGGAA
454 GATGATTTTCTTTTGCATGAAA
*
38652 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAATGTTCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
38717 CTCATAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTT-ATTAAGATGC
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CCTTTCATTAGGATAC
* ** * * *
38781 AAGACATTGATGCTTTGGTACCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAATG
130 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* ** * *
38846 TTTGTCTCTTAAATACA-ACAAAAGAGAATACTTGTATTGATCCCCTTTCTTTTCAAGATTGGGC
195 TTTGTCTCTTAAATA-AGACAAACG-GAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGC
* *
38910 ACCATAAACATAGTCTTCTTC-TAAGGATACATCATATTGATGCCTTGGTTTCA-CAAGAAAGGC
258 ACCATAAACATAGTCTTC-TCATTAGGATACATCATATTGATGCTTTGGTTT-AGCAAGAAAGGC
* * * * ** * *
38973 TTTTTCCTCC-CCAATTTTTGTAAAGTGTATGTTCTTGCCTCAAACAAGACAAACGTGGATTCTA
321 TTTTTCC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTA
* * * * * *
39037 GTAATGATCTTCATTCATTTTGTGATTACGCACTATAAACACATTCTTCTCTTTATGATAAATGA
385 GTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGA
* * *
39102 TACTGATTATTTT-TTTCTGGCATCAAA
450 TATTGATGATTTTCTTT-T-GCATGAAA
* * * * *
39129 ACCTTTTTTTTGCCCTGTTTTCCTTTAAATCAAAGCTCATACCTTAAATAAGACATGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
*
39194 CTCATAACAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATT-CTCTTCATTAGGATAC
66 CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCT-TTCATTAGGATAC
* * * *
39258 ATGCCGTTGATGC--T-GT-T----------G------TTTCCATCGTTTTTGATAGAATTAAAG
130 ATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * *
39303 TTTATCTCTTAAATAAGACAAACTTGAATACACATAC---T----ATTCTTTTCAGGATTTGGCA
195 TTTGTCTCTTAAATAAGACAAAC-GGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCA
* * * * * *
39361 CCATAAACATAGTCTTCTCGTTAGGATACTTGATATTGATGCTTTGGTTTCGCAAGAAATGCATT
259 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAGCAAGAAAGGCTTT
* * * * * * *
39426 TTCACCTCCGATTTTTGTAAGGTTTAAGTTCGTACCTCAAATGAAACAAACAAGGGTTCTAGTAA
324 TTCCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
39491 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACA
389 TGATCTTCATTCATTTTGTGATTAGGAACTACAAACA
39528 TAAGCATCTT
Statistics
Matches: 1982, Mismatches: 284, Indels: 88
0.84 0.12 0.04
Matches are distributed among these distances:
449 4 0.00
450 153 0.08
454 1 0.00
456 1 0.00
457 50 0.03
463 1 0.00
468 10 0.01
469 392 0.20
471 1 0.00
474 3 0.00
475 7 0.00
476 1214 0.61
477 145 0.07
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (475 bp):
ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
CTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCTTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAACGGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACC
ATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTAGCAAGAAAGGCTTTTT
CCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATG
ATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGAAA
Found at i:38672 original size:158 final size:157
Alignment explanation
Indices: 37084--38741 Score: 455
Period size: 159 Copynumber: 10.5 Consensus size: 157
37074 GGTTTTTTCT
* * * * * * *
37084 CACCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAACGATC
1 CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCTA-TAATGATC
* * * *
37149 TTCATTCATTTTATGATTAGGAACTACAAACACATTCTCCGCATTAGGATAAATGATATTGATGA
65 TCCATTCATTTCAGGATTAGGAAC-ACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* *
37214 TTTTCTTTTGCATGAAAATCTTTTCTTTG
129 CTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * **
37243 CTCC-----TT-TAAA-TCAAAGTTCATACCTTAAATAAGACAAGCGTCGATTCTCATAACAATC
1 CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCT-ATAATGATC
* ** * * * * *
37301 TCCATTCTTTTCTTGATTGGGATGC-CAAAACACATTC-CTTTCATTAGGATACATGACATTGAT
65 TCCATTCATTTCAGGATTAGGA-ACAC-AAACACATTCTC-CTCATTAGGATAAATGATATTGAT
* * * *
37364 G-CTTTGCTGTCT-CA-AGAAGAGCTTTTCTTTC
127 GACTTT-CT-TTTGCATGGAA-ATCTTTTCTTTG
* * * * * * * * * * * * *
37395 CATC-GTTTTCGATTGAA-TCTAAGTTTGT-CTCTTAAATATGACAAACGTGAATACTCGTACTG
1 CACCTATTTTTG--TAAAGTCAAAGTTCGTAC-CTCAAATAAGACAAACATGGATTCT-ATAATG
* * * * * * * * *** * * * *
37457 ATC-CCTATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCCCAAGGACACATCACATTG
62 ATCTCC-ATTCATTTCAGGATTAGG-AACACAAACACATTCTCCTCATTAGGATAAATGATATTG
* ** * * * ***
37521 ATGCCTTGGTTTAGCA-AGAAAGGCTTTT-TCCC
125 ATGACTTTCTTTTGCATGGAAA-TCTTTTCTTTG
* * * * * *
37553 CACCAATTTTTGTAAAGTCAATGTTCATGCCTCAAATGAGACAAACGTGGATTCTAGTAATGATC
1 CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCTA-TAATGATC
** * * * * * * * * *
37618 TTGATTAATTT-TGTGATTAGGCACTATAAAAACATTCTCCTCTTTAAGATAATTGATTTTGATG
65 TCCATTCATTTCAG-GATTAGGAAC-ACAAACACATTCTCCTCATTAGGATAAATGATATTGATG
* **
37682 -TTTTCCTTTTGCATAAAAATCTTTTCTTTG
128 ACTTT-CTTTTGCATGGAAATCTTTTCTTTG
* * * * * * *
37712 C-CCTATTTTCCTTTAAA-TCAAAGTCCATACCTTAAATAAGACAAGCATCGATTCTCGT-A-GC
1 CACCTATTTT--TGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCT-ATAATG-
* * ** *
37773 AGTCTCCATTC-TTTGCAAGATTAGGAAGC-CAAAACACATTC-CTTTCATTAGGATACCTGACA
62 A-TCTCCATTCATTT-CAGGATTAGGAA-CAC-AAACACATTCTC-CTCATTAGGATAAATGATA
* * * * * *
37835 TTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT-
122 TTGATGACTTT-CTTTTGCATGGAAATCTTTTCTTTG
* * * * * *
37870 CTATC-GTTTTTGATAGAA-TCAAAGTT--TATCTCTTAAATAAGATAAAC-CGGAATACTCATA
1 C-ACCTATTTTTG-TA-AAGTCAAAGTTCGTA-C-CTCAAATAAGACAAACATGG-ATTCT-ATA
* * * * * * * * * *
37930 CTGATCCCCATT-ATTTTCTGGATTTGGCAC-CGTAAACATAGTCTTCTCATTAGGATACATCAT
59 ATGATCTCCATTCA-TTTCAGGATTAGGAACAC--AAACACATTCTCCTCATTAGGATAAATGAT
* ** **
37993 ATTGATG-CTTTGGTTTTGCA-ACAAATGCATTTTC--AC
121 ATTGATGACTTT-CTTTTGCATGGAAAT-C-TTTTCTTTG
* * * * * *
38029 CTCCAATTTTTGTAAAGTCTAAGTTCGTACCTAAAATGAGACAAACATGGGTTCTAGTAATGATC
1 CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCTA-TAATGATC
* **
38094 TTCATTCATTTTGGGATTAGGAACAACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
65 TCCATTCATTTCAGGATTAGGAAC-ACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
* *
38159 TTTTCTTTTGCATGGAAATCTTTTCCTTG
129 CTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * *
38188 C-CCTATTTTCCTTTAAA-TCAAAGTTCATATCTTAAATAAGACAAGCATCGATTCTTATCAT-A
1 CACCTATTTT--TGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTC-TATAATGA
* * * ** *
38250 GTCTCCACTC-TTTCCATGATTGGGAAGC-CAATACACATTC-CCTTCATTAGGATCCATGACAT
63 -TCTCCATTCATTT-CAGGATTAGGAA-CACAA-ACACATTCTCC-TCATTAGGATAAATGATAT
* * * * * *
38312 TGA-CACTTT-TGTGTCGCAAGGAAACCTTTCCTTTT
123 TGATGACTTTCT-T-TTGCATGGAAATCTTTTCTTTG
* * * ** * *
38347 CACC-GTTTTTGATAAAATCAAAGTT--TATCTCCTAAATAAGACAAACCA-AAATACTCATACT
1 CACCTATTTTTG-TAAAGTCAAAGTTCGTACCT-C-AAATAAGACAAA-CATGGATTCT-ATAAT
* * * * * * * * * * * * *
38408 AATCCCCATTCCTTTCAAGATTTCGCACCATAAACATAGTCTACTCATTAGGATACACGATATTG
61 GATCTCCATTCATTTCAGGA-TTAGGAACACAAACACATTCTCCTCATTAGGATAAATGATATTG
* * ** **
38473 AT-TCTTTGGTTTTGCA-ACAAATGCATTTTC--AC
125 ATGACTTT-CTTTTGCATGGAAAT-C-TTTTCTTTG
* * * * *
38505 CTCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATC
1 CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCTA-TAATGATC
* **
38570 TTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
65 TCCATTCATTTCAGGATTAGGAAC-ACAAACACATTCTCCTCATTAGGATAAATGATATTGATGA
*
38635 ATTTCTTTTGCATGGAAATCTTTTCTTTG
129 CTTTCTTTTGCATGGAAATCTTTTCTTTG
* * * * * * *
38664 C-CCTATTTTCCTTTAAA-TCAATGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAA-CA
1 CACCTATTTT--TGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCT-ATAATGA
*
38726 GTCTCCATTCTTTTCA
63 -TCTCCATTCATTTCA
38742 AGGTTGGGAA
Statistics
Matches: 1078, Mismatches: 309, Indels: 224
0.67 0.19 0.14
Matches are distributed among these distances:
151 7 0.01
152 101 0.09
153 6 0.01
154 2 0.00
156 1 0.00
157 38 0.04
158 325 0.30
159 535 0.50
160 61 0.06
161 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (157 bp):
CACCTATTTTTGTAAAGTCAAAGTTCGTACCTCAAATAAGACAAACATGGATTCTATAATGATCT
CCATTCATTTCAGGATTAGGAACACAAACACATTCTCCTCATTAGGATAAATGATATTGATGACT
TTCTTTTGCATGGAAATCTTTTCTTTG
Found at i:40988 original size:476 final size:475
Alignment explanation
Indices: 39533--45605 Score: 7121
Period size: 476 Copynumber: 12.9 Consensus size: 475
39523 AAACATAAGC
* *
39533 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATATGATAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * * *
39598 CTCGTAACAATCTTCATTCTTTTCAAGATTGGGAAGCCAATACATATTCCTTTCATTAGGACAAA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * ** *
39663 TGACATTGATGCTTTGGGGCCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * *
39728 TTGTCTCTTAAATAAGACAAAAATGAATACTCATACTAATCCCCAATCTTTTGC-GGATTAGGCA
196 TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTT-CAAGATTGGGCA
* * * * *
39792 CCACAAACATAGTCTTCTCGTTAGGATACATCACATTGATGGTTTGGTTTCGCAAAAAAGGCTTT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TT
* * * *
39857 TTTCTCTCCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
324 TTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* *
39922 CGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCGCATTAGGATAAATGATATT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
39987 GATGATTTTCTTTTGCATGGAA
454 GATGATTTTCTTTTGCATGAAA
* * * * *
40009 ATCTTTTCTTTTCCTTATTTTCCTTTAAATCAAACTTCATACCTTAAATAAGGCAAGTATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
40074 CTCGTAGCAATCTCCATTCTTTTCAAGATTGGGAAGCCGAAACACATTCCTTTCATTAGGGTACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * *
40139 AGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTATTTCCACCGTTTTTGATAGAATCAATGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
** *
40204 TTGTCTCTTAAATACTAC-AAATATGAATGCTCATACTGATCCCCATCCCCATTCTTTTCAAGAT
196 TTGTCTCTTAAATAAGACAAAAT-TGAATACTCATACT-A-----ATCCCCATTCTTTTCAAGAT
* * ** * *
40268 TGGGCACCATAAACATAGTCTTCTCCTAAAAATCCATCATATTGATGCCTTGGTTTCGCAAGAAA
254 TGGGCACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAA
* * * * * * * *
40333 GGCTTTTTCCTTACCAATTTTTGAAAAGTCTATGTTCATGCCTCGAATGAGACAAACATAGATTC
319 GGCTTTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTC
* * * * * * *
40398 TAGAAATAATCTTCATTCATTTTGTGATTAGGCACTATAAACACATTCACCTCTTTAGGATAAAT
383 TAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAAT
*
40463 GATACTGATGATTTTCTTTTGCATGAAA
448 GATATTGATGATTTTCTTTTGCATGAAA
* * * *
40491 ATCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGCTCATACCATAAATAAGACAAGCATTGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * *
40556 CTCGTAACGGTCTCGATTCTTTTTAAGATTGGAAAGCCAAAACACATTTCCTTCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * ** * * *
40621 TGACGTTGATGCTTTGGGGCCAAAAGAAACA-CTTTTCTTTCCATCGTTCTTAATAGAATCAAAG
131 TGACATTGATGCTTTGGTGTCGCAAGAAA-AGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAG
* * * * * *
40685 TTTGTCTCTTAAATGAGACAAAATTGAATACTCAAACTAATCCCCATTGTTTTCAGGATTTGTCA
195 TTTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCA
* *
40750 CCATAAACATAGTCTTCTCATTAGGATACATGATATT-AGTGCTTTGGTTTCGCAAGAAATGCGT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGA-TGCTTTGGTTTCGCAAGAAAGGC-T
* * * * * *
40814 TTTTCCCACTAATTTTGGTAAAGTCTACGTTTGTTCCTCAAATGAGGCAAACATGGGTTCTAGTA
323 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * *
40879 ATGATCTTCATCCATTTTAGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATTAATGATAT
388 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
** *
40944 TGATGATTTTCTTTTTAATGGAA
453 TGATGATTTTCTTTTGCATGAAA
* * * *
40967 ATCTTTTCTTTGCCCTATTTTCCTTAAAATCAAAGTTTATTCCTTAAATAAGACAAGCATCAATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* *
41032 CTCGTAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGAATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * *
41097 AGATATTGATGCTTTGGAGTCGCAAGAAAAGCTTTTC--T--ACTGTTTTTGATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * * *
41158 TTGTCTC-TAAATGCA-AC-AAATGTGAGTACTTATA-TGGATCCCCAGTCTTTTCAAGAATGGG
196 TTGTCTCTTAAAT-AAGACAAAAT-TGAATACTCATACT-AATCCCCATTCTTTTCAAGATTGGG
* * **
41219 CACCATAAACATAGTCTTCTCCTAAAAATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
258 CACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * *
41284 TTTTCCTCACCAATTTTTGTAAAGTCTATGTTCGTGCCTCAAATGAGACAAACATAGATTCTAGT
323 TTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGT
* * * * * * **
41349 AATGATCTTCATTCATTTTGTGATTAGGCACCATAAACATATTCTCCTCTTTACAATAAATGATA
387 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
* * *
41414 TTGATGATTTTCTCTTACGTGAAA
452 TTGATGATTTTCTTTTGCATGAAA
* *
41438 ATCATTTCTTTGCCCTATTTTCC-TT---T-AAAGTTCATACCGTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * **
41498 CTCGTAATAGTTTCCATTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
** * *
41563 TGATGTTGATGCTTTGGTATCGCCAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * ** *
41628 TTGTCTCTTAAATAAGACAAACA-AGAATACTTATACGGATACCCATTCTTTTCAAGATTGGGCA
196 TTGTCTCTTAAATAAGACAAA-ATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCA
* * * *
41692 CCATAAACATAGTCTTCTCATTTGGATACA-CGATATTGAAGCTTTGATTTCGCAAGAAATGCAT
260 CCATAAACATAGTCTTCTCATTAGGATACATC-ATATTGATGCTTTGGTTTCGCAAGAAAGGC-T
* * * *
41756 TTTTCCCACCAA-TTTTGTAAAGTCTAAGTTCGTACCTCAAATGAAACAAACATCGATTCCAGTA
323 TTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA
* * * *
41820 ATGATCTTCTTTCATTTTGGGATTAGGAACTACGAACGCATTCCCCTCATTAGGATAAATGATAT
388 ATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATAT
* *
41885 TGATGATTTTCTTTTGTATGGAA
453 TGATGATTTTCTTTTGCATGAAA
* * * * * *
41908 ATCTTTTCTTTGCCCTATTTTTCGTTACATCAAAGTTCATTCCTTAAATAAGATAAGCATTGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * ***
41973 CTCGTAACAATCTCTATTCTTTTTTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * *
42038 AGACATTGATGCTTTGGTGTCGCAAGAGATGCTTTTCTTTCC-CCTATTTTTGATAGAATCAAAG
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-GTTTTTGATAGAATCAAAG
* * * *
42102 TTTGTCTCTTAAATACA-ACGAAA-T-AGTA---ATACTGAT-CCCATCCTTTTCAAGATTGGGC
195 TTTGTCTCTTAAATA-AGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGC
* * *
42160 ACCATAAACATAGTCTTCTGC-TAAGGATACATCATATTGATGCCTTGGTTTCACAAGAAAGGCT
259 ACCATAAACATAGTCTTCT-CATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCT
* * * * * * * *
42224 TTTTCCTCACTAATTTTGGTAAAGTCTATGTTCATGCCTCGAATAAGACAAACATGGATTCTAGT
323 TTTTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGT
* * *
42289 AATGATCTTCATTCATTTTGTGATTA-GACACTATAAACACATTCTCCTCTTTAGGATAAATGAT
387 AATGATCTTCATTCATTTTGGGATTAGGA-ACTACAAACACATTCTCCTCATTAGGATAAATGAT
* *
42353 ACTAATGATTTTCTTTTGCATGAAA
451 ATTGATGATTTTCTTTTGCATGAAA
* *
42378 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATATGATAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * *
42443 CTCGTGACAATCTTCATTCTTTTCAAGATTGGGAAGCCAATACATATTCCTTTCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * ** * *
42508 CGACATTGATGCTTTGGGGCCAAAAGAAAAGCTTTTCTTTCCACCGTTTTTAATAGAATAAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * * *
42573 TTGTCTCTTAAATAAGACAAAAATGAATACTCATACTAATCCCCAATCTGTTGC-GGATTAGGCA
196 TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCT-TTTCAAGATTGGGCA
* * * *
42637 CCACAAACATAGTCTTCTCGTTAGGATACATCACATTGATGGTTTGGTTTCGCAAGAAAGGCTTT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-TT
* * * *
42702 TTTCTCATCAATTTTTGTGATGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
324 TTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * *
42767 CGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCGCATTAGGATAAACGATATT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
42832 GATGATTTTCTTTTGCATGAAA
454 GATGATTTTCTTTTGCATGAAA
* * * *
42854 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAATTTCATACCTTAAATAAGCCAAGCATCAAAT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * ***
42919 CTCATAACCA-TTTCCATTCTTTTTTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
66 CTCGTAA-CAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATAC
* * *
42983 ATGACATTGATACTTTGGTGTCAG-AAGAAAAGCTTTTCCTTCCACCGTTTTTGGTAGAATCAAA
130 ATGACATTGATGCTTTGGTGTC-GCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA
* * * * * *** * * *
43047 ATTTGTCTCTTAAATAAGATAAAAATGAACACTCGTACTAATCGTTAATCTTTT-AGGGATTAGG
194 GTTTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCA-AGATTGGG
* * * * *
43111 CACGATAAACATAATCTTCTTATTAGGATATATCATATTGATGCTTTGCTTTCGCAAGAAAGGCT
258 CACCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGC-
* * * * *
43176 TTTTTCCCAACAATTTTTGTAATGTCTAAGTTCGTACCACAAATGAGACAAAAAAGGGTTCTAGT
322 TTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGT
* * * *
43241 AATGATCTTTATTCATTTTGGGATTGGGAACTACAAGCACATTCTCCTTATTAGGATAAATGATA
387 AATGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATA
*
43306 TTGATGATTTTCTTTTGCATGGAA
452 TTGATGATTTTCTTTTGCATGAAA
*
43330 ATCTTTTCTTTG--C-----TCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCGTCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* **
43388 CTCATAACAGTCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * ** * * *
43453 TGACATTGATGCTTTGGTGTCTCAAGAATAGCTTTTCTTTCCACTATTTTCGATTGAATCTAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* ** * * * *
43518 TTGTCTCTTAAATAGGACAAACGTGAATACTCGTATTGATCCCTATTCTTTTCAAGATTGGGCAC
196 TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCAC
*** * * * *
43583 CATAAACATAGTCTTCTCCCAAGGACACATCACATTGATGCCTTGGTTTAGCAAGAAAGGCTTTT
261 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* * * *
43648 TCCCCACCAATTTTTGTAAAGTC-AATGTTCATGCCTCAAATGAGACAAACGTGGATTCTAGTAA
326 T-CCCACCAATTTTTGTAAAGTCTAA-GTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * * * * * * * * * * *
43712 TGAGCTTGATTAATTTTGTGATTAGGCACTATAAAAACATCCTCCTCTTTA--AGAATTGATTTT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* *
43775 GATGTTTTTCTTCTGCATGAAA
454 GATGATTTTCTTTTGCATGAAA
* *
43797 ATCTTTTCTTTGCCCTATTTTCCTTTAGATCAAAGTCCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * *
43862 CTCGTAGCAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCTTTCATTAGGATACC
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * *
43927 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTATCGTTTTTGATAGAATTAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* *** * * * *
43992 TTATCTCTTAAATAAGACAAACCGGAATACTCATACTGATCCCCATTATTTTC-TGCATTTGGCA
196 TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAG-ATTGGGCA
* * * * *
44056 CCGTAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTTGCAACAAATGCATT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * *
44121 TTCACCTCCAATTTTTGTAAAGTCTAAGTTCGTACCTAAAATGAGACAAACATGGGTTCTAGCAA
325 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
*
44186 TGATCTTCATTCATTTTGGGATTAGGAACAACAAACACATTCTCCTCATTAGGATAAATGATATT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
*
44251 GATGATTTTCTTTTGCATGGAA
454 GATGATTTTCTTTTGCATGAAA
* *
44273 ATCTTTTCCTTGCCCTATTTTCCTTTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
** * * * * * *
44338 CTTATCATAGTCTCCACTCTTTCCAAGATTGGGAAGCCAATACACATTCCCTTCATTAGGATCCA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * * * * * *
44403 TGACATTGACGCTTTTGTGTCGCAAGGAAACCTTTTCTTTTCACCGTTTTTCATAAAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * ** * **
44468 TTATCTCCTAAATAAGAC-AAACCGAAATACTCATACTAATCCCCATTCCTTTCAAGATTTCGCA
196 TTGTCTCTTAAATAAGACAAAATTG-AATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCA
* * * * * * * *
44532 CCATAAACATAGTGTACTCATTAGGATACATGATATTGATTCTTTGGTTTTGCAACAAATGCATT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
*
44597 TTCACCTCCAATTTTTGTAAAGTCTAAGTTC-TACCTCAAATGAGACAAACATGGGTTCTAGTAA
325 TTC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
44661 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* *
44726 GATGATTTTCTTTTGCTTG-GA
454 GATGATTTTCTTTTGCATGAAA
44747 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * * * *
44812 CTCATAACAGTCTCCATTCTTTTCAAGGTTGGGAAGCTAATACACATTCCCTTCATTAAGATGCA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* ** * * * *
44877 AGACATTGATGCTTTGGTACCGCAAGGAAAGCTTTTCTTTCCACCATTTTTGATCGAATCAATGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
** ** * * *
44942 TTGTCTCTTAAATACA-ACAAAAGAGAATACTTGTATTGATCCCCTTTCTTTTCAAGATTGGGCA
196 TTGTCTCTTAAATA-AGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCA
* * *
45006 CCATAAACATAGTCTTCTCCTAAGGATACATCATATTGATGCCTTGGTTTCGCAAGAAAGGCTTT
260 CCATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTT
* * * * ** * * *
45071 TTCCTCCCCAATTTTTGTAAAGTGTATGTTCATGTCTCAAACGAGACAAACGTGGATTCTAGTAA
325 TTCC-CACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAA
* * * *
45136 TGATCTTCATTCATTTTGTGATT----AC-GC--AC-TA-T-T--T-A-T--GATAAATGATACT
389 TGATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATT
* *
45185 GATTATTTT-TTTTAGCATCAAA
454 GATGATTTTCTTTT-GCATGAAA
* * * * * *
45207 ACCTTTTCTTTGCCCTGTTTTCCTTTAAACCAAAGTTCATACCCTAAATAAGACATGCATCAATT
1 ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
* * * *
45272 CTCGTAATAGTCCCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTCATCATTAGGATACA
66 CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
* * *
45337 AGCCATTGATGC--T-GT-T----------G------TTTCCATCGTTTTTGATAGAATCAAAGT
131 TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
* * * *
45382 TTATCTCTTAAATAAGACAAACTTGAATACTCATAC---T----ATTCTTTTCAGGATTTGGCAC
196 TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCAC
* * * * *
45440 CATAAACATAGTCTTCTCGTTAGGATACGTGATATTGATGCTTTGGTTTCGCAAGAAATGCATTT
261 CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
* * * *
45505 TCACCTCCGATTTTTGTAAAGTTTAAGTTCGTACCTCAAATGAGACAAACAAGGGTTCTAGTAAT
326 TC-CCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAAT
*
45570 GACCTTCATTCATTTTGGGATTAGGAACTACAAACA
390 GATCTTCATTCATTTTGGGATTAGGAACTACAAACA
45606 TAAGCATCTT
Statistics
Matches: 4785, Mismatches: 719, Indels: 221
0.84 0.13 0.04
Matches are distributed among these distances:
433 148 0.03
434 1 0.00
437 3 0.00
438 1 0.00
439 1 0.00
440 53 0.01
446 1 0.00
457 2 0.00
458 5 0.00
459 23 0.00
460 126 0.03
461 1 0.00
462 1 0.00
463 1 0.00
465 1 0.00
466 122 0.03
467 42 0.01
468 19 0.00
469 424 0.09
470 497 0.10
471 340 0.07
472 40 0.01
473 7 0.00
474 659 0.14
475 351 0.07
476 1493 0.31
477 22 0.00
481 8 0.00
482 388 0.08
483 5 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.36
Consensus pattern (475 bp):
ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATT
CTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACA
TGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGT
TTGTCTCTTAAATAAGACAAAATTGAATACTCATACTAATCCCCATTCTTTTCAAGATTGGGCAC
CATAAACATAGTCTTCTCATTAGGATACATCATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT
TCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATG
ATCTTCATTCATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGATAAATGATATTGA
TGATTTTCTTTTGCATGAAA
Found at i:47408 original size:11 final size:11
Alignment explanation
Indices: 47378--47409 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
47368 GGAAGCCAAT
*
47378 ACAAAAATAAG
1 ACAAAAATGAG
47389 ACAAAAATGAG
1 ACAAAAATGAG
47400 ACAAAAATGA
1 ACAAAAATGA
47410 ATACTTAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.69, C:0.09, G:0.12, T:0.09
Consensus pattern (11 bp):
ACAAAAATGAG
Found at i:48050 original size:692 final size:692
Alignment explanation
Indices: 46727--48053 Score: 1894
Period size: 692 Copynumber: 1.9 Consensus size: 692
46717 AATACTCATA
* *
46727 CTAATCCCCATTTTTTTCAGGATTTGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
1 CTAATCCCCATCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
* * * * ** *
46792 TGATGCTTTGGTTTTGCAAGAAATGCATTTTTTCCACCAATTTTTGTAAAGTCTAAGTTCGTACC
66 TGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAAATTTGTAAAGTCTAAGTTCATACC
* * * * * *
46857 TCAAATGAGACAAACATGGGTTCTAGTAATTATCTTCCTTCATTTTATGATTAGGCACTATAAAC
131 TCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGACTAGGCACAATAAAC
* * *
46922 ACATTCTCCTTTTTAAGATAAACGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
196 ACATTCTCCTTTTTAAGATAAACGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCC
* * * * *
46987 CTATTTTCCTTTAAATCAAAGTTCATATCTTAAATGAGACAAGCGTCGATTCTCATAACAGTCTC
261 CTATTTTCCTGTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCAATTCTCATAACAATCTC
* *
47052 CATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGGTACAAGACATTGATGGTT
326 CATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
* * *
47117 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTATCTTTTAAATA
391 TGGTGTCGCAAAAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATA
* ** *** * *
47182 AGGCAAACGTGAATACTCATGTTGATCTCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
456 AGACAAACAAGAATACTCATACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACATAGTCT
* * ** *
47247 TCTCTTTTGGATACACGATATTGAAGCTTTGGTTTCACAAGAAATGCATTTTCACCACCAATTTT
521 TCTCATTTGGATACACGACATTGAAGCTTTGGTTTCACAAGAAACACATTTTCACCACCAATTTC
* * **
47312 TGTAAAGTCTAAGTTCATAGCTCAAATGAGATTAACATTGGTTCTAGTAAAGATTGGGAAGCCAA
586 TGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATTGGTTCTAGTAAAGATTGGGAAGCCAA
47377 TACAAAAATAAGACAAAAATGAGACAAAAATGAATACTTAAG
651 TACAAAAATAAGACAAAAATGAGACAAAAATGAATACTTAAG
* *
47419 CTAATCCCCAATCTTTTT-GGGATTAGGCACCATAAACATAGTTTTCTCATTAGGATACATC-AT
1 CTAATCCCC-ATCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACA-CGAT
** *
47482 ATTGATGCCTTGGTTTCGCAATTAAGGC-TTTTTCCTCACCAAAATTTGTAAAGTCTATGTTCAT
64 ATTGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCC-CACCAAAATTTGTAAAGTCTAAGTTCAT
* * * *
47546 GCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTGATTCATTTTGTGACTAGGCACAATA
128 ACCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGACTAGGCACAATA
* * *
47611 AACACGTTC-CCTTCTTTAGGATAAATGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTT
193 AACACATTCTCCTT-TTTAAGATAAACGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTT
* *
47675 TGCCTTATTTTCCTGTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCAATTCTCGTAACAA
257 TGCCCTATTTTCCTGTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCAATTCTCATAACAA
* * * * *
47740 TCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACTTTCTCTTCATTAGGATGCATGACATTGAT
322 TCTCCATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
*
47805 GCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCA-TCGTTTTTGATAGAATCAAAATTTGTCTCTT
387 GCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCACT-GTTTTTGATAGAATCAAAATTTATCTCTT
* * *
47869 AAATAAGACAAACAAGAATACTTATACAGATCCCCATTCCTTTCAATATTGGGCACCGTAAACAT
451 AAATAAGACAAACAAGAATACTCATACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACAT
* *
47934 AGTCTTCTCATTTGGATACACGACATTGAAGCTTTGGCTTT-GCATGAAACACATATTTC-CCAC
516 AGTCTTCTCATTTGGATACACGACATTGAAGCTTTGG-TTTCACAAGAAACACAT-TTTCACCAC
* *
47997 CAATTTCTGTAAAGTCTAAGTTCGTACCTCAAATAAGACAAACATTTGTTCTAGTAA
579 CAATTTCTGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATTGGTTCTAGTAA
48054 TGATCTTTTT
Statistics
Matches: 556, Mismatches: 72, Indels: 14
0.87 0.11 0.02
Matches are distributed among these distances:
691 11 0.02
692 530 0.95
693 15 0.03
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (692 bp):
CTAATCCCCATCTTTTTCAGGATTAGGCACCATAAACATAGTCTTCTCATTAGGATACACGATAT
TGATGCCTTGGTTTCGCAAGAAAGGCATTTTTCCCACCAAAATTTGTAAAGTCTAAGTTCATACC
TCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTTATGACTAGGCACAATAAAC
ACATTCTCCTTTTTAAGATAAACGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCC
CTATTTTCCTGTAAATCAAAGTTCATATCTTAAATAAGACAAGCATCAATTCTCATAACAATCTC
CATTCTTTTCTTGATTAGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
TGGTGTCGCAAAAAAAGCTTTTCTTTCCACTGTTTTTGATAGAATCAAAATTTATCTCTTAAATA
AGACAAACAAGAATACTCATACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACATAGTCT
TCTCATTTGGATACACGACATTGAAGCTTTGGTTTCACAAGAAACACATTTTCACCACCAATTTC
TGTAAAGTCTAAGTTCATACCTCAAATAAGACAAACATTGGTTCTAGTAAAGATTGGGAAGCCAA
TACAAAAATAAGACAAAAATGAGACAAAAATGAATACTTAAG
Found at i:48290 original size:476 final size:475
Alignment explanation
Indices: 47399--49339 Score: 2347
Period size: 476 Copynumber: 4.1 Consensus size: 475
47389 ACAAAAATGA
* * * * *** * *
47399 GACAAAAATGAATACTTA-AGCTAATCCCCAATCTTTTTGGGATTAGGCACCATAAACATAGTTT
1 GACAAACATGAATACTCATA-CTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
* ** * **
47463 TCTCATTAGGATACATCATATTGATGCCTTGGTTTCGCAATTAAGGC-TTTTTCCTCACCAAAAT
65 TCTCATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAACGCATTTTTCC-CACCAATTT
** * *
47527 TTGTAAAGTCTATGTTCATGCCTCAAATGAGATAAACATAGATTCTAGTAATGATCTTGATTCAT
128 TTGTAAAGTCTACATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCAT
* * * *
47592 TTTGTGACTAGGCACAATAAACACGTTC-CCTTCTTTAGGATAAATGATACTGATGATTTTCTTT
193 TTTGTGATTAGGCACTATAAACACATTCTCC-TCATTAGGATAAATGATACTGATGATTTTCTTT
* * * *
47656 TACATGAAAATCTTTTCTTTGCCTTATTTTCCTGTAAATCAAAGTTCATATCTTAAATAAGACAA
257 TGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAA
* * ** * *
47721 GCATCAATTCTCGTAACAATCTCCATTCTTTTCTTGATTGGGAAGCCAAAACACTTTCTCTTCAT
322 GCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCAT
* * *
47786 TAGGATGCATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTTTTCTTTCCATCGTTTTTGATAG
387 TAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAG
* *
47851 AATCAAAATTTGTCTCTTAAATAA
452 AATCAAAGTTTGTCTCTTAAATAC
* * * * * *
47875 GACAAACAAGAATACTTATACAGATCCCCATTCCTTTCAATATTGGGCACCGTAAACATAGTCTT
1 GACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
* * * * * * *
47940 CTCATTTGGATACACGACATTGAAGCTTTGGCTTT-GCATGAAACACATATTTCCCACCAATTTC
66 CTCATTAGGATACAC-ATATTGATGCTTTGG-TTTCGCAAGAAACGCATTTTTCCCACCAATTTT
* * * * **
48004 TGTAAAGTCTA-AGTTCGTACCTCAAATAAGACAAACATTTG-TTCTAGTAATGATCTTTTTTCA
129 TGTAAAGTCTACA-TTCATGCCTCAAATGAGACAAACA-TAGATTCTAGTAATGATCTTCATTCA
* * * *
48067 TTTTAG-GATTAGGAACTACAAACACATTCTCCTCAATAGGATAAATGATACTGATGATTTTCTA
192 TTTT-GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTT
* *
48131 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATGCTTTAAATAAGACA
256 TTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
* **
48196 AGCATCGATTCTCATAACAATCTCCATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCA
321 AGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * * *
48261 TTAGGATACAAGACGTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCATTTTTGATA
386 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
*
48326 GAATCAAAGTTTATCTCTTAAATAC
451 GAATCAAAGTTTGTCTCTTAAATAC
* * * * *
48351 GACAAACGTTAATACTCATGCTGATCCCCATTGTTTTCAAGATTGGGCACCATAAACATAGTTTT
1 GACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
* * * * *
48416 CTCCTAAGGATACATCATATTGATTCCTTGGTTTCGCAAGAAAGGC-TTTTTCCTCACCAATTTT
66 CTCATTAGGATACA-CATATTGATGCTTTGGTTTCGCAAGAAACGCATTTTTCC-CACCAATTTT
* *
48480 TGTAAAGTCTATATTCATGCCACAAATGAGACAAACAT-GAATTCTAGTAATGATCTTCATTCAT
129 TGTAAAGTCTACATTCATGCCTCAAATGAGACAAACATAG-ATTCTAGTAATGATCTTCATTCAT
* * * *
48544 TTTGTGATTAGGCACTATAAACGCATTCTCCT-ATTTAGGATAAATGACAATGATGATCTTCTTT
193 TTTGTGATTAGGCACTATAAACACATTCTCCTCA-TTAGGATAAATGATACTGATGATTTTCTTT
* * * *
48608 TGCCT-AGAAATCTTTTCTTTACCCTATTTTCCTTTAAATCGAAGTTCGTACCTTAAATAAGACA
257 TGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACA
** * * * * ** *
48672 AGGTTCGATTCTCCTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAATATGCATTCCCTTCT
321 AGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCA
* * * *
48737 TTAGGATACATGACATTGATGCTTTTGTGTCGTAAGGAAAGCTTTTCTTTCCATCGTTTTTGATA
386 TTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATA
* *
48802 GAATCAAAGTTTGTCTTTTAAATAT
451 GAATCAAAGTTTGTCTCTTAAATAC
* * * *
48827 TACAAACATGAATACTCATACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAGCACAGTCTT
1 GACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
* * ** * * *
48892 CTAAGTAGGATATGCTATATTGATGCTTTGGTTTCGTAAGAAATGGATTTTTCCCACCAATTTTT
66 CTCATTAGGATACAC-ATATTGATGCTTTGGTTTCGCAAGAAACGCATTTTTCCCACCAATTTTT
* * * * * * * * *
48957 ATAAAGTTTACATTCATGCCTCGAAGGAGACAAACATTGTTTCTAGCAATGATCTCCTTTCATTT
130 GTAAAGTCTACATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTT
* * * * * *
49022 TATGATTAGGCACTATAAACACATTCTTCTCTTTTGGATAAATGATATTGATCATTTTCTTTTGC
195 TGTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGC
* *
49087 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATATGACAAGCA
260 ATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * * * * * *
49152 TCGATTCTCATAACAGTTTCCATTCTTTTCAAGGTTAGAAAGCTAATAGACATTCCCTTCATTAG
325 TCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAG
* *
49217 GATACATGACATTGATGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
390 GATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAAT
49282 CAAAGTTTGTCTCTTAAATAC
455 CAAAGTTTGTCTCTTAAATAC
* * *
49303 GACTAACGTGAATACTCATACTGATCCCCATTTTTTT
1 GACAAACATGAATACTCATACTGATCCCCATTCTTTT
49340 GCCTCTTAAA
Statistics
Matches: 1246, Mismatches: 197, Indels: 44
0.84 0.13 0.03
Matches are distributed among these distances:
474 1 0.00
475 15 0.01
476 1205 0.97
477 25 0.02
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (475 bp):
GACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTT
CTCATTAGGATACACATATTGATGCTTTGGTTTCGCAAGAAACGCATTTTTCCCACCAATTTTTG
TAAAGTCTACATTCATGCCTCAAATGAGACAAACATAGATTCTAGTAATGATCTTCATTCATTTT
GTGATTAGGCACTATAAACACATTCTCCTCATTAGGATAAATGATACTGATGATTTTCTTTTGCA
TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
CGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGG
ATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
AAAGTTTGTCTCTTAAATAC
Found at i:49275 original size:952 final size:952
Alignment explanation
Indices: 47439--49339 Score: 2617
Period size: 952 Copynumber: 2.0 Consensus size: 952
47429 ATCTTTTTGG
* *
47439 GATTAGGCACCATAAACATAGTTTTCTCATTAGGATACATCATATTGATGCCTTGGTTTCGCAAT
1 GATTAGGCACCATAAACATAGTTTTCTCATAAGGATACATCATATTGATGCCTTGGTTTCGCAAG
* * * *
47504 TAAGGCTTTTTCCTCACCAAAATTTGTAAAGTCTATGTTCATGCCTCAAATGAGATAAACATAGA
66 AAAGGCTTTTTCCTCACCAAAATTTGTAAAGTCTATATTCATGCCACAAATGAGACAAACATAGA
* * *
47569 TTCTAGTAATGATCTTGATTCATTTTGTGACTAGGCACAATAAACACGTTCCCTTCTTTAGGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCACAATAAACACATTCCCTTATTTAGGATA
* * * * *
47634 AATGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCTGTAAATCAAA
196 AATGACAATGATGATCTTCTTTTACATGAAAATCTTTTCTTTACCCTATTTTCCTGTAAATCAAA
* * **
47699 GTTCATATCTTAAATAAGACAAGCATCAATTCTCGTAACAATCTCCATTCTTTTCTTGATTGGGA
261 GTTCATACCTTAAATAAGACAAGCATCAATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGA
* * *
47764 AGCCAAAACACTTTCTCTTCATTAGGATGCATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTT
326 AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTT
*
47829 TTCTTTCCATCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACTTAT
391 TTCTTTCCATCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACTCAT
* * * * * *
47894 ACAGATCCCCATTCCTTTCAATATTGGGCACCGTAAACATAGTCTTCTCATTTGGATACACGACA
456 ACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACACAGTCTTCTAAGTAGGATACACGACA
* * *
47959 TTGAAGCTTTGGCTTTGCATGAAACACATATTTCCCACCAATTTCTGTAAAGTCTAAGTTCGTAC
521 TTGAAGCTTTGGCTTTGCAAGAAACACATATTTCCCACCAATTTCTATAAAGTCTAAGTTCATAC
* * **
48024 CTCAAATAAGACAAACATTTGTTCTAGTAATGATCTTTTTTCATTTTAGGATTAGGAACTACAAA
586 CTCAAAGAAGACAAACATTTGTTCTAGCAATGATCTCCTTTCATTTTAGGATTAGGAACTACAAA
*
48089 CACATTCTCCTCAATAGGATAAATGATACTGATGATTTTCTATTGCATGAAAATCTTTTCTTTGC
651 CACATTCTCCTCAATAGGATAAATGATACTGATCATTTTCTATTGCATGAAAATCTTTTCTTTGC
* *
48154 CCTATTTTCCTTTAAATCAAAGTTCATGCTTTAAATAAGACAAGCATCGATTCTCATAACAATCT
716 CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAATCT
** * * *
48219 CCATTATTTTCTTGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACGTTGATGCT
781 CCATTATTTTCAAGATTAGAAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
*
48284 TTGGTGTCGCAAGAAAAGCTTTTCTTTCTACCATTTTTGATAGAATCAAAGTTTATCTCTTAAAT
846 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAAT
* *
48349 ACGACAAACGTTAATACTCATGCTGATCCCCATTGTTTTCAA
911 ACGACAAACGTGAATACTCATACTGATCCCCATTGTTTTCAA
* * *
48391 GATTGGGCACCATAAACATAGTTTTCTCCTAAGGATACATCATATTGATTCCTTGGTTTCGCAAG
1 GATTAGGCACCATAAACATAGTTTTCTCATAAGGATACATCATATTGATGCCTTGGTTTCGCAAG
**
48456 AAAGGCTTTTTCCTCACCAATTTTTGTAAAGTCTATATTCATGCCACAAATGAGACAAACAT-GA
66 AAAGGCTTTTTCCTCACCAAAATTTGTAAAGTCTATATTCATGCCACAAATGAGACAAACATAG-
* * *
48520 ATTCTAGTAATGATCTTCATTCATTTTGTGATTAGGCACTATAAACGCATTCTCC-TATTTAGGA
130 ATTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCACAATAAACACATTC-CCTTATTTAGGA
* * *
48584 TAAATGACAATGATGATCTTCTTTTGCCT-AGAAATCTTTTCTTTACCCTATTTTCCTTTAAATC
194 TAAATGACAATGATGATCTTCTTTTACATGA-AAATCTTTTCTTTACCCTATTTTCCTGTAAATC
* * ** * * *
48648 GAAGTTCGTACCTTAAATAAGACAAGGTTCGATTCTCCTAATAGTCTCCATTCTTTTCAAGATTG
258 AAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCCTAACAATCTCCATTCTTTTCAAGATTG
* ** * * * **
48713 GGAAGCCAATATGCATTCCCTTCTTTAGGATACATGACATTGATGCTTTTGTGTCGTAAGGAAAG
323 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAG
* * ** *
48778 CTTTTCTTTCCATCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAATATTACAAACATGAATACT
388 CTTTTCTTTCCATCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACT
* * * * ** *
48843 CATACTGATCCCTATTCTTTTCAAGATTGGGCACCATAAGCACAGTCTTCTAAGTAGGATATGCT
453 CATACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACACAGTCTTCTAAGTAGGATACACG
* * * *** * * *
48908 ATATTGATGCTTTGG-TTTCGTAAGAAATGGATTTTTCCCACCAATTTTTATAAAGTTTACA-TT
518 ACATTGAAGCTTTGGCTTT-GCAAGAAACACATATTTCCCACCAATTTCTATAAAGTCTA-AGTT
* * * * *
48971 CATGCCTCGAAGGAGACAAACA-TTGTTTCTAGCAATGATCTCCTTTCATTTTATGATTAGGCAC
581 CATACCTCAAAGAAGACAAACATTTG-TTCTAGCAATGATCTCCTTTCATTTTAGGATTAGGAAC
* * ** * * * *
49035 TATAAACACATTCTTCTCTTTTGGATAAATGATATTGATCATTTTCTTTTGCATGGAAATCTTTT
645 TACAAACACATTCTCCTCAATAGGATAAATGATACTGATCATTTTCTATTGCATGAAAATCTTTT
*
49100 CTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATATGACAAGCATCGATTCTCATAA
710 CTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAA
* * * * * * * *
49165 CAGTTTCCATTCTTTTCAAGGTTAGAAAGCTAATAGACATTCCCTTCATTAGGATACATGACATT
775 CAATCTCCATTATTTTCAAGATTAGAAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATT
* * * *
49230 GATGCTTTGGTGTTGCAAGGAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
840 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTC
* *
49295 TTAAATACGACTAACGTGAATACTCATACTGATCCCCATTTTTTT
905 TTAAATACGACAAACGTGAATACTCATACTGATCCCCATTGTTTT
49340 GCCTCTTAAA
Statistics
Matches: 822, Mismatches: 121, Indels: 12
0.86 0.13 0.01
Matches are distributed among these distances:
951 8 0.01
952 811 0.99
953 3 0.00
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.37
Consensus pattern (952 bp):
GATTAGGCACCATAAACATAGTTTTCTCATAAGGATACATCATATTGATGCCTTGGTTTCGCAAG
AAAGGCTTTTTCCTCACCAAAATTTGTAAAGTCTATATTCATGCCACAAATGAGACAAACATAGA
TTCTAGTAATGATCTTCATTCATTTTGTGACTAGGCACAATAAACACATTCCCTTATTTAGGATA
AATGACAATGATGATCTTCTTTTACATGAAAATCTTTTCTTTACCCTATTTTCCTGTAAATCAAA
GTTCATACCTTAAATAAGACAAGCATCAATTCTCCTAACAATCTCCATTCTTTTCAAGATTGGGA
AGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAAAAAAGCTT
TTCTTTCCATCGTTTTTGATAGAATCAAAATTTGTCTCTTAAATAAGACAAACAAGAATACTCAT
ACAGATCCCCATTCCTTTCAAGATTGGGCACCATAAACACAGTCTTCTAAGTAGGATACACGACA
TTGAAGCTTTGGCTTTGCAAGAAACACATATTTCCCACCAATTTCTATAAAGTCTAAGTTCATAC
CTCAAAGAAGACAAACATTTGTTCTAGCAATGATCTCCTTTCATTTTAGGATTAGGAACTACAAA
CACATTCTCCTCAATAGGATAAATGATACTGATCATTTTCTATTGCATGAAAATCTTTTCTTTGC
CCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCATAACAATCT
CCATTATTTTCAAGATTAGAAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT
TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTATCTCTTAAAT
ACGACAAACGTGAATACTCATACTGATCCCCATTGTTTTCAA
Found at i:55151 original size:30 final size:30
Alignment explanation
Indices: 55117--55196 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
55107 TTCTCTCTTC
* *
55117 CTCCTATCATC-CCTCCTCTCTCTATTATCT
1 CTCCTATC-TCTCCTCCTATCTCTACTATCT
55147 CTCCTATCTCTCCTCCTATCTCTACTATCT
1 CTCCTATCTCTCCTCCTATCTCTACTATCT
*
55177 CTCTTATCTCTCCTCCTATC
1 CTCCTATCTCTCCTCCTATC
55197 ATCCCTCCTA
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
29 2 0.04
30 44 0.96
ACGTcount: A:0.12, C:0.44, G:0.00, T:0.44
Consensus pattern (30 bp):
CTCCTATCTCTCCTCCTATCTCTACTATCT
Found at i:55154 original size:9 final size:9
Alignment explanation
Indices: 55142--55190 Score: 53
Period size: 9 Copynumber: 5.1 Consensus size: 9
55132 CTCTCTCTAT
55142 TATCTCTCC
1 TATCTCTCC
55151 TATCTCTCCTCC
1 TA--TCT-CTCC
*
55163 TATCTCTAC
1 TATCTCTCC
*
55172 TATCTCTCT
1 TATCTCTCC
55181 TATCTCTCC
1 TATCTCTCC
55190 T
1 T
55191 CCTATCATCC
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 21 0.64
10 3 0.09
11 3 0.09
12 6 0.18
ACGTcount: A:0.12, C:0.41, G:0.00, T:0.47
Consensus pattern (9 bp):
TATCTCTCC
Found at i:55162 original size:12 final size:12
Alignment explanation
Indices: 55147--55209 Score: 59
Period size: 12 Copynumber: 5.8 Consensus size: 12
55137 TCTATTATCT
55147 CTCCTATCTCTC
1 CTCCTATCTCTC
55159 CTCCTA--TCT-
1 CTCCTATCTCTC
*
55168 CTACTATCTCT-
1 CTCCTATCTCTC
55179 CT--TATCTCTC
1 CTCCTATCTCTC
55189 CTCCTATCATC-C
1 CTCCTATC-TCTC
55201 CTCCTATCT
1 CTCCTATCT
55210 TTTCTTTCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
9 12 0.27
10 5 0.11
11 6 0.14
12 19 0.43
13 2 0.05
ACGTcount: A:0.13, C:0.44, G:0.00, T:0.43
Consensus pattern (12 bp):
CTCCTATCTCTC
Found at i:57543 original size:159 final size:156
Alignment explanation
Indices: 57370--58495 Score: 394
Period size: 159 Copynumber: 7.1 Consensus size: 156
57360 TTTTCTTCAA
*
57370 TGGGAAGCCA-AAACACATTCCTTTTATT-AGGATACGTGACATTGATGCTTTGGTGTTGCAAGC
1 TGGGAA-CCATAAACACATT-CTTTTATTCAGGATACATGACATTGATGCTTTGGTGTTGCAAG-
*
57433 AAAGCTTTTCCTTCCACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAACAAGAA
63 AAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAATTTTGTC-CTTAAATAAGACAAACAAGAA
57498 TACTTA-TACGAATCCCCATTCTTTTCAAGAT
126 TAC-TAGTACGAATCCCCATTCTTTTCAAGAT
* * * ** * * *
57529 TGGGCACCATAAACATAATCTTCTT-TTGTGGATACACGATATTGA-ACTTTTGGT-TTCGCAAG
1 TGGGAACCATAAACACATTCTT-TTATTCAGGATACATGACATTGATGC-TTTGGTGTT-GCAAG
* * * * * * * * *
57591 AAATGCATTT-TTCCCAGCAATTTTTG-TAAAGTCTAAGTTTGTACCTCAAATGAGATAAACATG
63 AAA-GCTTTTCTTTCCA-CCATTTTTGATAAA-TCAAATTTTGT-CCTTAAATAAGACAAACAAG
** * * * ** **
57654 GGTTCTAGGAATG-ATCTTCATTCATTTT-GGGAT
124 AATACTA-GTACGAATCCCCATTC-TTTTCAAGAT
* * * * * * * * ** * * *
57687 TTGGAACTACAAACGCATTCTCCTTATTCA-GATAAATGATATTGATGATTTTCTTTTACATGGA
1 TGGGAACCATAAACACATTCT-TTTATTCAGGATACATGACATTGATGCTTTGGTGTTGCA-AGA
* * ** * * *
57751 AATCTTTTCTTTGCC-CTATTTTCTTTTAAATCAAAGTTAAT-TCCTTAAATAAGACAAGCATCG
64 AAGCTTTTCTTT-CCACCATTTT-TGATAAATCAAA-TT-TTGTCCTTAAATAAGACAAACA-AG
* ** * * * **
57814 -ATTCTAGTAATAGTCGCCATTGTTTTCTTGAT
124 AATACTAGTACGAATCCCCATTCTTTTCAAGAT
* *
57846 TGGGAAGCCA-AAACACATTCCCTTTATT-AGGATACATGACATTGATGCTTTGGTGTTGTAAGA
1 TGGGAA-CCATAAACACATT-CTTTTATTCAGGATACATGACATTGATGCTTTGGTGTTGCAAG-
*
57909 AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAAAAAGAA
63 AAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAATTTTGTC-CTTAAATAAGACAAACAAGAA
*
57974 TACTTA-TACGGATCCCCATTCTTTTCAAGAT
126 TAC-TAGTACGAATCCCCATTCTTTTCAAGAT
* * * * * * * *
58005 TGGGTACCATAAACA-TTGTCTTCTCATGCA-AATACACGATATTGA-ACTTTGG-GTTTCGCAA
1 TGGGAACCATAAACACAT-TCTT-TTATTCAGGATACATGACATTGATGCTTTGGTG-TT-GCAA
* * * * * * * *
58066 GAAATGCATTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
62 GAAA-GCTTTTCTTTCCACC-ATTTTTGATAAA-TCAAATTTTGT-CCTTAAATAAGACAAACAA
** * *** ** **
58129 GGGTTCTAGTAATTATCTTCATTCATTTT-GGGAT
123 GAATACTAGTACGAATCCCCATTC-TTTTCAAGAT
* * * ** * * * * * ** * * *
58163 TAGGAACTACAAATGCGTTCTCCTTATT-AGGATAAATGATATTGATGATTTTCTTTTACATGGA
1 TGGGAACCATAAACACATTCT-TTTATTCAGGATACATGACATTGATGCTTTGGTGTTGCA-AGA
* * * * ** *
58227 AATCTTTTCTTTACC-CTC-TTTTCCT-TTAAATCAAAGTTAAT-TCTTTAAATAAGACAAGTAT
64 AAGCTTTTCTTT-CCAC-CATTTT--TGATAAATCAAA-TT-TTGTCCTTAAATAAGACAAACAA
* * * * *
58288 CAATTCTCA-TAAC-AGTCTCTATTCTTTTCAAGAT
123 GAATACT-AGT-ACGAATCCCCATTCTTTTCAAGAT
* * * ** *
58322 TGGGAAGCCA-AAACACATTCCCTTCATT-AGGATACAAGACATTGATGCTTTGGTGTCACAAAA
1 TGGGAA-CCATAAACACATT-CTTTTATTCAGGATACATGACATTGATGCTTTGGTGTTGC-AAG
* * * *
58385 AAAGCTTTTCTTTCCACCGTTTTTGATAAAATCGAATTTTGTCTCTTAATTAAGACAAACATGAA
63 AAAGCTTTTCTTTCCACCATTTTTGAT-AAATCAAATTTTGTC-CTTAAATAAGACAAACAAGAA
* * *
58450 TACGT-GTATGGATCCTCATTCTTTTCAAGAT
126 TAC-TAGTACGAATCCCCATTCTTTTCAAGAT
*
58481 TGGGCACCATAAACA
1 TGGGAACCATAAACA
58496 TAGTCTTCTC
Statistics
Matches: 684, Mismatches: 205, Indels: 156
0.65 0.20 0.15
Matches are distributed among these distances:
157 13 0.02
158 237 0.35
159 401 0.59
160 32 0.05
161 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.37
Consensus pattern (156 bp):
TGGGAACCATAAACACATTCTTTTATTCAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAA
GCTTTTCTTTCCACCATTTTTGATAAATCAAATTTTGTCCTTAAATAAGACAAACAAGAATACTA
GTACGAATCCCCATTCTTTTCAAGAT
Found at i:57983 original size:476 final size:476
Alignment explanation
Indices: 56836--61241 Score: 5326
Period size: 476 Copynumber: 9.3 Consensus size: 476
56826 TTTCATCATA
* * * * *
56836 CCTTAAATAAGATAAGCATTGATTTTCGTAACAGTCTCCATTCATTTCAAGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * *
56901 ACACATTCCCATCATTAGAATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTT
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * * * * *
56966 CACTGTTTTTGATAGAATCAAAATATGTTTCTTAAATACGAAAAACGTGAATGCTCATACTGGTC
131 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATAC-GG--
* * *
57031 CCCATCCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATGATAT
193 ---ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATAT
* * * * * * **
57096 TGATGCTTTGGTTTCGCAATAATTGCGTTTCTCCCACCATTTTTTGTAAAGTCTAAGTTCGTATT
255 TGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACC
* * *
57161 TCAAATCAGACAAATATGGGTTCTAGGAATGATCTTCATTCATTTTGGGATTAGGAACTACAAAC
320 TCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAAC
* * *
57226 GCATTCTCCTTATTCGGATAAACGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCC
385 GCATTCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC
* * *
57291 CTA-TTTCTTTTAAACCAATGTTAATT
450 CTATTTTCCTTTAAATCAAAGTTAATT
* * *** *
57317 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTTTCCATTGTTTTCTTCAATGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * ** * * *
57382 ACACATTCCTTTTATTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGCAAAGCTTTTCCTTC
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
57447 CACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGAATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATC
* *
57512 CCCATTCTTTTCAAGATTGGGCACCATAAACATAATCTTCT-TTTGTGGATACACGATATTGAA-
196 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATT-TGGATACACGATATTGAAG
* *
57575 CTTTTGGTTTCGCAAGAAATGCATTTTTCCCAGCAATTTTTGTAAAGTCTAAGTTTGTACCTCAA
260 C-TTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAA
* * *
57640 ATGAGATAAACATGGGTTCTAGGAATGATCTTCATTCATTTTGGGATTTGGAACTACAAACGCAT
324 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCAT
*
57705 TCTCCTTATTCA-GATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTA
389 TCTCCTTATT-AGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTA
*
57769 TTTTCTTTTAAATCAAAGTTAATT
453 TTTTCCTTTAAATCAAAGTTAATT
* * * **
57793 CCTTAAATAAGACAAGCATCGATTCTAGTAATAGTCGCCATTGTTTTCTTGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * * *
57858 ACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
57923 CACCATTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAAAAAGAATACTTATACGGATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATC
* * ****
57988 CCCATTCTTTTCAAGATTGGGTACCATAAACATTGTCTTCTCATGCAAATACACGATATTGAA-C
196 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGC
*
58052 TTTGGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAA
261 TTT-GGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAA
* * *
58117 TGAGACAAACATGGGTTCTAGTAATTATCTTCATTCATTTTGGGATTAGGAACTACAAATGCGTT
325 TGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATT
* * *
58182 CTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTTTACCCTCTT
390 CTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
58247 TTCCTTTAAATCAAAGTTAATT
455 TTCCTTTAAATCAAAGTTAATT
* * * *
58269 CTTTAAATAAGACAAGTATCAATTCTCA-TAACAGTCTCTATTCTTTTCAAGATTGGGAAGCCAA
1 CCTTAAATAAGACAAGCATCGATTCT-AGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAA
* *
58333 AACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAAAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * *
58398 CCACCGTTTTTGATAAAATCGAATTTTGTCTCTTAATTAAGACAAACATGAATACGTGTATGGAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGAT
*
58463 CCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAG
195 CCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAG
* * ** * * *
58528 CTTTGGTTTCGTAAGAAATGCATTTTTACCC-CTAATTTTTACAACGTTTAAGTTCGAACCTCAA
260 CTTTGGTTTCGCAAGAAATGCATTTTT-CCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAA
* * *
58592 ATGAGACAAAGATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGACCTACAAACCCAT
324 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCAT
* * * * * *
58657 TCTCCTCAATAGGATAAATGATATTGACGATTTTATTTTGCACGAAAATCTTTTCTTTGCCCTAT
389 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
* *
58722 TTTCCTTCAAATCAAAGTTCATT
454 TTTCCTTTAAATCAAAGTTAATT
* * * *
58745 CCTTAAATAAGATAAGCATTGATTCTTA-TAACAG-CTTCCATTCTTTTCAAGATTAGGAAGACA
1 CCTTAAATAAGACAAGCATCGATTC-TAGTAACAGTC-TCCATTCTTTTCAAGATTGGGAAGCCA
* * * *
58808 ACACACATTCCCATCATTAGGATACGAGACATTGATGCTTTGGTGTCACAA-AAAAGCTTTTCTT
64 AAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * *
58872 TTCACAGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAAGACAGACATGAATA-TGTGTACGG
129 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACT-TATACGG
* * * * * *
58936 ATCCCCATTCTTTTTAATATTAGGCACCATAAACATAGTCTTCTCAATTGCATGCACGATATTGA
193 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGA
* * * ** * *
59001 AGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCTCCAATTTTTGTTGAGTATAAGTTCGTGCCTCA
258 AGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCA
* ** * * * *
59066 AATGAGACAAACATGGGTTCTAGTAATAATCTTCATTCATTTTATGATTAAGCACTATAAACACA
323 AATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCA
* * *
59131 TTCTCCTCT-TTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAATTTTTTCTTTGCCCT
388 TTCTCCT-TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
* *
59195 ATTTTCCTTTAAATCAAAGTTCATA
452 ATTTTCCTTTAAATCAAAGTTAATT
* * * * *
59220 CCTTAAATAAGACAAGCATTGATTGTCGTAACAGTCTCCGTTCTTTTCAAGATTAGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * *
59285 ACACATTCTCTTCATTAAGATACAAGACATTGATGCTTTGGTGTCCCAAGAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
59350 CACCGGTTTTGATAGAATCAAAGTTTATCTTTTAAATAAGACAAACATGAATACATATACGGATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATC
* * *
59415 CCCATTTTTTTCAATATTGGGCACCATAAACATAGTCTTCTCATTTAGATACACGATATTGAAGC
196 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGC
* * * ** * * *
59480 TTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTCGTTGAGTATAGGTT-GATGCCTCAAA
261 TTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCG-TACCTCAAA
* * * *
59544 TCAGGCAAACATGGGTTCTAGTAATGATCTTCACTCATTTTGGGATTAGGAAATACAAA--CA--
325 TGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATT
*
59605 CT-C--ATTAGGATAAATGATATTGAGGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
390 CTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATT
*
59667 TTCTTTTAAATCAAAGTTCAA-T
455 TTCCTTTAAATCAAAGTT-AATT
* * ** *
59689 CCTTAAATAAGACAAGCATCGATTCTAGTAATAGTCTCCATTGTTTTCTTGATTGGGAAGCGAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
** * * ** * * *
59754 ACACATTCTTTTTATTATGATACGTGACATTGATGCTTTGGTGTTGCAACAAAAGCTTTTCTTTT
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * *
59819 CACCATTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGAGAAACAAGAATACTTATACGGATC
131 CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATC
* * * * * *
59884 CCCATTCTTTTCAAGATTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGC
196 CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGC
* * * * *
59949 TTTGGTTTTGCAAGAAATGCATTTTTACCGCCAATTTTTGCAAAG-CATAAGTTTGTACCTCAAA
261 TTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTC-TAAGTTCGTACCTCAAA
60013 TGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATT
325 TGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATT
* * * * *
60078 CTCCTCATTAAGATAAATGGTCTTGATGATTTTCTTTTGCACT-GAAAT-TGTTTCTTTGCGCTA
390 CTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGGAAATCT-TTTCTTTGCCCTA
*
60141 TTTT-CTGTTAAATCAAAGTTTATT
453 TTTTCCT-TTAAATCAAAGTTAATT
* * * * * * *
60165 CCTTAACTAAGATAAGCATCGATTGTCGTAATAGTCTCAACTCTTTTCAAGATTGGGAAGCC---
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* ** * * * * *
60227 A-ATATTCCCACCATTAGGATATAAGACATTGAGGTTTTGGGGTCGCAAGAAAAGCTTTTTTTTT
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC--TTTTCTT
* * * * * *
60291 TTCACCGTTTTTGATAGAATCAAAGTTTGTCTTTTAAAAAAGAGAACCATGAATACATGA-ACGG
129 TCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC-TTATACGG
* * * *
60355 ATCCCTATGCTTTTCAAGATTAGGCACCATAAACATAGTCTTCTCATTTGCATACACGATATTGA
193 ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGA
* * * ** * * * *
60420 AGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTACCAATTTTTGTTGAGTATAAGTTCATGCTTCA
258 AGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCA
* * * * * *
60485 AATGAGAGAAACATGGGTTC---T-A-G--CTTCATTCATTTTGTGATTAGGCACTATAAACACT
323 AATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCA
* *
60543 TTCTCCTCT-TTAGGATAAATGATACTGATGATTTTCTTTTGCATGAAAAT-TTTTCTTTGCCCT
388 TTCTCCT-TATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCT
** * *
60606 ATTTTCCTTTAAATTGAAGTTCATA
452 ATTTTCCTTTAAATCAAAGTTAATT
* * * ***
60631 CCTTAAATAAGACAAGCATCGATTCTCGTAATA-TCCTCCATCCTTTTGTTGATTGGGAAGCCAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGT-CTCCATTCTTTTCAAGATTGGGAAGCCAA
* *
60695 AACACATTCCCTTCCTTAGGATACAAGACATTGATGCTTTGGTGACGCAAGAAAAGCTTTTCTTT
65 AACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* *
60760 ACACCGTTTTTGATAGAATGAAAGTTTGTCTC-----T--G----AC------AC-----C-GAT
130 CCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGAT
* *
60802 CCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTCGGATAAACGATATTGAAG
195 CCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAG
* * * * *
60867 CTTTGGTTTCGTAAGAAATGCGTTTTGCCCACCAATTTTGGTAAAGTCTAAGTTCATAACC-CAA
260 CTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT-ACCTCAA
* * * *
60931 ATGGGACAAACATGGGTTCTAGTAATGATCTTCATGCA-TTTGGGGTTAGGAACTAAAAACGCAT
324 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCAT
* * * *
60995 TCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCGTGAAAATCTTTTCTTTGCCCTCT
389 TCTCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTAT
61059 TTTCCTTTAAATCAAAGTTAATT
454 TTTCCTTTAAATCAAAGTTAATT
* * * **
61082 CCTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTTGAGATTGGGAAGCCAAA
1 CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
* * * **
61147 ACACATTCCCTTCATTAGAATACAAAACATTGATGCTTTGCTGTCGTGAGAAAAGCTTTTCTTTC
66 ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * *
61212 CATCGTTTTTGATAGAATCAGAGTATGTCT
131 CACCGTTTTTGATAGAATCAAAGTTTGTCT
61242 TTTCAAGATT
Statistics
Matches: 3408, Mismatches: 459, Indels: 146
0.85 0.11 0.04
Matches are distributed among these distances:
445 130 0.04
446 2 0.00
448 1 0.00
449 1 0.00
450 14 0.00
451 227 0.07
452 9 0.00
457 1 0.00
461 1 0.00
465 1 0.00
466 81 0.02
467 74 0.02
468 36 0.01
469 401 0.12
470 48 0.01
471 4 0.00
472 41 0.01
473 3 0.00
474 194 0.06
475 650 0.19
476 1319 0.39
477 11 0.00
480 1 0.00
481 158 0.05
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (476 bp):
CCTTAAATAAGACAAGCATCGATTCTAGTAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAA
ACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
CACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATC
CCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGC
TTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAAT
GAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATTC
TCCTTATTAGGATAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTT
TCCTTTAAATCAAAGTTAATT
Found at i:59317 original size:951 final size:947
Alignment explanation
Indices: 56831--61241 Score: 5324
Period size: 951 Copynumber: 4.7 Consensus size: 947
56821 TTGGTTTTCA
* * * * * * **
56831 TCATACCTTAAATAAGATAAGCATTGATT-TTCGTAACAGTCTCCATTCATTTCAAGATTGGGAA
1 TCATTCCTTAAATAAGACAAGCATCGATTCTT-ATAATAGTCTCCATTCTTTTCTTGATTGGGAA
* *
56895 GCCAAAACACATTCCCATCATTAGAATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
65 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * ** * *
56960 TCTTTTCACTGTTTTTGATAGAATCAAAATATGTTTCTTAAATACGAAAAACGTGAATGCTCATA
130 TCTTTTCACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAAT-ATTATA
*
57025 CTGGTCCCCATCCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACA
194 C-GG-----ATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATT-GGATACA
* * * * * * *
57090 TGATATTGATGCTTTGGTTTCGCAATAATTGCGTTTCTCCCACCATTTTTTGTAAAGTCTAAGTT
252 CGATATTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTT
** * * *
57155 CGTATTTCAAATCAGACAAATATGGGTTCTAGGAATGATCTTCATTCATTTTGGGATTAGGAACT
317 CGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACT
* * * *
57220 ACAAACGCATTCTCCT-TATTCGGATAAACGATATTGATGATTTTCTTTTACATGGAAATCTTTT
382 ACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTT
* * * *
57284 CTTTGCCCTA-TTTCTTTTAAACCAATGTTAATTCCTTAAATAAGACAAGCATCGATTCTAGTAA
446 CTTTGCCCTATTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAA
* * *** * * * **
57348 CAGTTTCCATTGTTTTCTTCAATGGGAAGCCAAAACACATTCCTTTTATTAGGATACGTGACATT
511 CAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATT
* * * * *
57413 GATGCTTTGGTGTTGCAAGCAAAGCTTTTCCTTCCACCATTTTTGATAGAATCAAATTTTGTCTC
576 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * *
57478 TTAAATAAGACAAACAAGAATACTTATACGAATCCCCATTCTTTTCAAGATTGGGCACCATAAAC
641 TTAAATAAGACAAACATGAATACATATACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAAC
* * * *
57543 ATAATCTTCT-TTTGTGGATACACGATATTGAA-CTTTTGGTTTCGCAAGAAATGCATTTTTCCC
706 ATAGTCTTCTCATT-TGGATACACGATATTGAAGC-TTTGGTTTCGCAAGAAAGGCTTTTTTCCC
* * * *
57606 AGCAATTTTTGTAAAGTCTAAGTTTG-TACCTCAAATGAGATAAACATGGGTTCTAGGAATGATC
769 A-CAATTTTT-T-AAGTATAAGTTCGATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATC
* *
57670 TTCATTCATTTTGGGATTTGGAACTACAAACGCATTCTCCTTATTCA-GATAAATGATATTGATG
831 TTCATTCATTTTGGGATTAGGAACTACAAAC-CATTCTCCTCATT-AGGATAAATGATATTGATG
* * *
57734 ATTTTCTTTTACATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGT
894 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* * *
57788 TAATTCCTTAAATAAGACAAGCATCGATTC-TAGTAATAGTCGCCATTGTTTTCTTGATTGGGAA
1 TCATTCCTTAAATAAGACAAGCATCGATTCTTA-TAATAGTCTCCATTCTTTTCTTGATTGGGAA
* * * *
57852 GCCAAAACACATTCCCTTTATTAGGATACATGACATTGATGCTTTGGTGTTGTAAGAAAAGCTTT
65 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * *
57917 TCTTTCCACCA-TTTTTGATAGAATCAAATTTTGTCTCTTAAATAAGACAAAAAAGAATACTTAT
130 TCTTTTCA-CAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA-TTAT
* * *
57981 ACGGATCCCCATTCTTTTCAAGATTGGGTACCATAAACATTGTCTTCTCA-TGCAAATACACGAT
193 ACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTG--GATACACGAT
58045 ATTGAA-CTTTGGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
256 ATTGAAGCTTT-GGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT
* *
58109 GCCTCAAATGAGACAAACATGGGTTCTAGTAATTATCTTCATTCATTTTGGGATTAGGAACTACA
320 ACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACA
* * * *
58174 AATGCGTTCTCCT-TATTAGGATAAATGATATTGATGATTTTCTTTTACATGGAAATCTTTTCTT
385 AACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTT
* * * * * *
58238 TACCCTCTTTTCCTTTAAATCAAAGTTAATTCTTTAAATAAGACAAGTATCAATTCTCATAACAG
449 TGCCCTATTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAG
*
58303 TCTCTATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
514 TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGAT
* * * * *
58368 GCTTTGGTGTCACAAAAAAAGCTTTTCTTTCCACCGTTTTTGATAAAATCGAATTTTGTCTCTTA
579 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTA
* * * * *
58433 ATTAAGACAAACATGAATACGTGTATGGATCCTCATTCTTTTCAAGATTGGGCACCATAAACATA
644 AATAAGACAAACATGAATACATATACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
* * *
58498 GTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTCGTAAGAAATGCATTTTTACCC-CTA
709 GTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGC-TTTTTTCCCAC-A
* * *
58562 ATTTTTACAACGTTTAAGTTCGA-ACCTCAAATGAGACAAAGATGGGTTCTAGTAATGATCTTCA
772 ATTTTT-TAA-GTATAAGTTCGATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCA
* * *
58626 TTCATTTTGGGATTAGGACCTACAAACCCATTCTCCTCAATAGGATAAATGATATTGACGATTTT
835 TTCATTTTGGGATTAGGAACTACAAA-CCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
* * *
58691 ATTTTGCACGAAAATCTTTTCTTTGCCCTATTTTCCTTCAAATCAAAGT
899 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* * * ** *
58740 TCATTCCTTAAATAAGATAAGCATTGATTCTTATAACAG-CTTCCATTCTTTTCAAGATTAGGAA
1 TCATTCCTTAAATAAGACAAGCATCGATTCTTATAATAGTC-TCCATTCTTTTCTTGATTGGGAA
* * * * *
58804 GACAACACACATTCCCATCATTAGGATACGAGACATTGATGCTTTGGTGTCACAA-AAAAGCTTT
65 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * *
58868 TCTTTTCACAGTTTTTTATAGAATCAAAGTTTGTCTCTTAAAAAAGACAGACATGAATATGTGTA
130 TCTTTTCACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATAT-TATA
* * * * *
58933 CGGATCCCCATTCTTTTTAATATTAGGCACCATAAACATAGTCTTCTCAATTGCATGCACGATAT
194 CGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTC-ATTGGATACACGATAT
* * * ** * *
58998 TGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCTCCAATTTTTGTTGAGTATAAGTTCGTGCC
258 TGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACC
* ** * * *
59063 TCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCATTCATTTTATGATTAAGCACTATAAAC
323 TCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAAC
* * *
59128 ACATTCTCCTCTTTAGGATAAATGATAATGATGATTTTCTTTTGCATGAAAATTTTTTCTTTGCC
388 GCATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * * *
59193 CTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATTGATTGTCGTAACAGTCTC
453 CTATTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
* * * *
59258 CGTTCTTTTCAAGATTAGGAAGCCAAAACACATTCTCTTCATTAAGATACAAGACATTGATGCTT
518 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
* * * *
59323 TGGTGTCCCAAGAAAAGCTTTTCTTTCCACCGGTTTTGATAGAATCAAAGTTTATCTTTTAAATA
583 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATA
* *
59388 AGACAAACATGAATACATATACGGATCCCCATTTTTTTCAATATTGGGCACCATAAACATAGTCT
648 AGACAAACATGAATACATATACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT
*
59453 TCTCATTTAGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTT
713 TCTCATTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCA-CAATTTT
* * * * * *
59518 CGTTGAGTATAGGTT-GATGCCTCAAATCAGGCAAACATGGGTTCTAGTAATGATCTTCACTCAT
777 --TTAAGTATAAGTTCGATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCAT
* *
59582 TTTGGGATTAGGAAATACAAA-CA-----CTCATTAGGATAAATGATATTGAGGATTTTCTTTTG
840 TTTGGGATTAGGAACTACAAACCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTG
* *
59641 CATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCAAAGT
905 CATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* *
59684 TCAATCCTTAAATAAGACAAGCATCGATTC-TAGTAATAGTCTCCATTGTTTTCTTGATTGGGAA
1 TCATTCCTTAAATAAGACAAGCATCGATTCTTA-TAATAGTCTCCATTCTTTTCTTGATTGGGAA
* ** * * ** * *
59748 GCGAAAACACATTCTTTTTATTATGATACGTGACATTGATGCTTTGGTGTTGCAACAAAAGCTTT
65 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* *
59813 TCTTTTCACCA-TTTTTGATTGAATCAAAGTTTGTCTCTTAAATAAGAGAAACAAGAATACTTAT
130 TCTTTTCA-CAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATA-TTAT
* * * *
59877 ACGGATCCCCATTCTTTTCAAGATTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATA
193 ACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCAT-TGGATACACGATA
* * * * * *
59942 TTAAAGCTTTGGTTTTGCAAGAAATGCATTTTTACCGCCAATTTTTGCAAAG-CATAAGTTTGTA
257 TTGAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTC-TAAGTTCGTA
60006 CCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAA
321 CCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAA
* * * *
60071 ACGCATTCTCCTCATTAAGATAAATGGTCTTGATGATTTTCTTTTGCACTG-AAAT-TGTTTCTT
386 ACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCA-TGAAAATCT-TTTCTT
* * * * * *
60134 TGCGCTATTTT-CTGTTAAATCAAAGTTTATTCCTTAACTAAGATAAGCATCGATTGTCGTAATA
449 TGCCCTATTTTCCT-TTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAACA
* * * ** *
60198 GTCTCAACTCTTTTCAAGATTGGGAAGCC---A-ATATTCCCACCATTAGGATATAAGACATTGA
513 GTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGA
* * * * * *
60259 GGTTTTGGGGTCGCAAGAAAAGCTTTTTTTTTTTCACCGTTTTTGATAGAATCAAAGTTTGTCTT
578 TGCTTTGGTGTCGCAAGAAAAGC--TTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTC
* * * * * *
60324 TTAAAAAAGAGAACCATGAATACATGA-ACGGATCCCTATGCTTTTCAAGATTAGGCACCATAAA
641 TTAAATAAGACAAACATGAATACAT-ATACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAA
* *
60388 CATAGTCTTCTCATTTGCATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCTA
705 CATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCA
* * * *
60453 CCAATTTTTGTTGAGTATAAGTTC-ATGCTTCAAATGAGAGAAACATGGGTTC---T-A-G--CT
770 -CAA-TTTT-TTAAGTATAAGTTCGATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCT
* * * * * *
60510 TCATTCATTTTGTGATTAGGCACTATAAACACTTTCTCCTCTTTAGGATAAATGATACTGATGAT
832 TCATTCATTTTGGGATTAGGAACTACAAAC-CATTCTCCTCATTAGGATAAATGATATTGATGAT
**
60575 TTTCTTTTGCATGAAAAT-TTTTCTTTGCCCTATTTTCCTTTAAATTGAAGT
896 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
* ** * *
60626 TCATACCTTAAATAAGACAAGCATCGATTCTCGTAATA-TCCTCCATCCTTTTGTTGATTGGGAA
1 TCATTCCTTAAATAAGACAAGCATCGATTCTTATAATAGT-CTCCATTCTTTTCTTGATTGGGAA
* *
60690 GCCAAAACACATTCCCTTCCTTAGGATACAAGACATTGATGCTTTGGTGACGCAAGAAAAGCTTT
65 GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * *
60755 TCTTTACACCGTTTTTGATAGAATGAAAGTTTGTCTC-----T--GAC--AC------------C
130 TCTTTTCACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATATTATAC
*
60799 -GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTCGGATAAACGATATT
195 GGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATT-GGATACACGATATT
* * * * *
60863 GAAGCTTTGGTTTCGTAAGAAATGCGTTTTGCCCACCAATTTTGGTAAAGTCTAAGTTCATAACC
259 GAAGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGT-ACC
* * * *
60928 -CAAATGGGACAAACATGGGTTCTAGTAATGATCTTCATGCA-TTTGGGGTTAGGAACTAAAAAC
323 TCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAAC
* *
60991 GCATTCTCCTCATTAGGATAAATGATATTGATGATTTT-TTTTGCGTGAAAATCTTTTCTTTGCC
388 GCATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC
* * *
61055 CTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCAATTCTCGTAATAGTCTC
453 CTATTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTC
** * *
61120 CATTCTTTTTGAGATTGGGAAGCCAAAACACATTCCCTTCATTAGAATACAAAACATTGATGCTT
518 CATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTT
* ** * * *
61185 TGCTGTCGTGAGAAAAGCTTTTCTTTCCATCGTTTTTGATAGAATCAGAGTATGTCT
583 TGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCT
61242 TTTCAAGATT
Statistics
Matches: 2988, Mismatches: 402, Indels: 166
0.84 0.11 0.05
Matches are distributed among these distances:
916 2 0.00
917 95 0.03
918 59 0.02
919 178 0.06
920 6 0.00
921 42 0.01
933 2 0.00
935 2 0.00
936 26 0.01
937 1 0.00
938 2 0.00
939 1 0.00
940 1 0.00
941 46 0.02
942 170 0.06
943 236 0.08
944 177 0.06
945 356 0.12
946 5 0.00
949 3 0.00
950 18 0.01
951 862 0.29
952 518 0.17
953 16 0.01
956 2 0.00
957 161 0.05
958 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (947 bp):
TCATTCCTTAAATAAGACAAGCATCGATTCTTATAATAGTCTCCATTCTTTTCTTGATTGGGAAG
CCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
CTTTTCACAGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATATTATACG
GATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTGGATACACGATATTGA
AGCTTTGGTTTCGCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCA
AATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCA
TTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
TTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCAT
TCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGG
TGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGA
CAAACATGAATACATATACGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTTCT
CATTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACAATTTTTTAA
GTATAAGTTCGATACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGGG
ATTAGGAACTACAAACCATTCTCCTCATTAGGATAAATGATATTGATGATTTTCTTTTGCATGAA
AATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGT
Found at i:61695 original size:159 final size:159
Alignment explanation
Indices: 61505--63547 Score: 791
Period size: 159 Copynumber: 12.9 Consensus size: 159
61495 CATAACAGTT
** * * *
61505 TCCATTCTTTTCTTGATTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACAAGACATTGATG
1 TCCATTCTTTTCAAGATTGGGCA-CCATAAACATATTCCCTTCATTAGGATACAAGATATTGATG
*
61569 CTTTGGTTTCGCAAGAAAAGCCTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGT-CTCTTA
65 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTAC-CTTA
* *
61633 AATAAGACAAACATGAATACATGTACGGATC
129 AATAAGACAAACATGAATTCTTGTACGGATC
* * * * * * *
61664 CCCACTCTTTTCAAGATTTGGCATCATAAACATAATCTCC-TCATTTGGATA-AACGATATTGAA
1 TCCATTCTTTTCAAGATTGGGCACCATAAACATATTC-CCTTCATTAGGATACAA-GATATTGAT
* * * * * * * * ** * *
61727 GTTTTGGCTTT-GCAAGAAAGGCTTTT-TTCCCACCAGTTTTGGTTGAGTCTAAGTTCATGCCTC
64 GCTTTGG-TTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTACCTT
** * *
61790 AAATAAGACAAACATGGGTTCTAGTA-GTAATC
128 AAATAAGACAAACATGAATTCTTGTACG-GATC
** * ** * * * * * * *
61822 TTTATTCGTTTT-GAGATAAGGAACTACAAACGTATACTCC-TCATTAAGAGA-AATGATATTGA
1 TCCATTC-TTTTCAAGATTGGGCACCATAAACATATTC-CCTTCATTAGGATACAA-GATATTGA
* ** ** * * * ** *
61884 TGATTTTCTATT-GCTCG-AAATCTTTTCTTTGCC-CTATTTTTCGTTA-AATCAAAGTTCATTC
63 TGCTTTGGT-TTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTT-GATAGAATCAAAGTTTGTAC
* * * *
61945 CCTAAATAAGACAAGCCTTG-ATTCTCGTAAC--ATTC
125 CTTAAATAAGACAA-ACATGAATTCTTGT-ACGGA-TC
* * * * * * * *
61980 TCAATTCTTTTCAAGATTGGGAAGCCA-AACCAAATTCCCATCATTAGGAAACAAGACATAGATG
1 TCCATTCTTTTCAAGATTGGGCA-CCATAAACATATTCCCTTCATTAGGATACAAGATATTGATG
* * * * * *
62044 CCTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATTT-TCCTCTTA
65 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTAC-CTTA
* * *
62108 AATAAGACAAACATGAGTACGTGTACGGATC
129 AATAAGACAAACATGAATTCTTGTACGGATC
* * * *
62139 -CATATTCTTTTTAAGATTGGGCACCATAAACATAGT--CTTCTGATTTGGATA-AACGATATTG
1 TC-CATTCTTTTCAAGATTGGGCACCATAAACATATTCCCTTC--ATTAGGATACAA-GATATTG
* * * ** * * *
62200 AAGCTTTGGTTTCGTAAGAAAAGC-TTT-TTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGC
62 ATGCTTTGGTTTCGCAAGAAAAGCTTTTCTTTC-CACCA-TTTTTGATAGAATCAAAGTTTGTAC
* * * ** * ***
62262 CTCAAATGAGACAAACAAGGGTTCTAGTAATAATC
125 CTTAAATAAGACAAACATGAATTCTTGTACGGATC
* * * * * *
62297 TTCATTCATTTTTATGATTAGGCACTATAAACATATTCTCC-TCTTTAGGATA-AATGATATTGA
1 TCCATTC-TTTTCAAGATTGGGCACCATAAACATATTC-CCTTCATTAGGATACAA-GATATTGA
* ** * * * * * **
62360 TGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCT-TTA-AATCAAAGTTCATAC
63 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAGAATCAAAGTTTGTAC
* * * * * *
62422 TTTAAATAAGACAAGCATCGACTCTCAT-AACAG-TC
125 CTTAAATAAGACAAACAT-GAAT-TCTTGTACGGATC
*** * * * *
62457 TCCATTCTTTTGTTGATTGGGAAGCC--AAACATAATTCCCTTCATTAGGATGCAAGACATTGGT
1 TCCATTCTTTTCAAGATTGGGCA-CCATAAACAT-ATTCCCTTCATTAGGATACAAGATATTGAT
* * * *
62520 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTGTT
64 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTAC-CTT
* * **
62584 AAATAAGACAAACAAGAATACTTACACGGATC
128 AAATAAGACAAACATGAATTCTTGTACGGATC
* * ** * * * * * * *
62616 -CCTATTCTTTTCAAGTTTGGGAATAATAAACTTAGT-CTTCTCATTTGGATACACGATATTAAA
1 TCC-ATTCTTTTCAAGATTGGGCACCATAAACATATTCCCT-TCATTAGGATACAAGATATTGAT
* * * * * * * * *
62679 GCTTTGGTTTCACAAGAAAGGCTTTT-TTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCCTC
64 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGTACCTT
* * **
62742 AAATGAGACAAACATCAATT-TTAGTAATGATC
128 AAATAAGACAAACATGAATTCTT-GTACGGATC
* * * ** * * * * *
62774 TTCATACAATTT-GTGATTAGGCACTATAAACACATTCTCC-GCTTTAGGATA-AACGATATTGA
1 TCCATTC-TTTTCAAGATTGGGCACCATAAACATATTC-CCTTCATTAGGATACAA-GATATTGA
* ** * * * * * **
62836 TGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCT-TTA-AATCAAAGTTCATAC
63 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAGAATCAAAGTTTGTAC
* * * * *
62898 CTTCAATAGGACAAGCATCAATTCTTGTAACAG-TC
125 CTTAAATAAGACAAACATGAATTCTTGT-ACGGATC
* * * ** * *
62933 TCCATTCTTTTCAGGATTGGGAAGCCA-AAACACATTTTCTTCATCAGGATACAAGACATTGATG
1 TCCATTCTTTTCAAGATTGGGCA-CCATAAACATATTCCCTTCATTAGGATACAAGATATTGATG
* * * *
62997 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-CTTTTA
65 CTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTAC-CTTA
* * *
63061 AATAAGACAAACAAGAATACTTATACGGATC
129 AATAAGACAAACATGAATTCTTGTACGGATC
* * * * * *
63092 CCCATTCTTTTCAAGATTTGGCACCATAAACATATT-CTTCTCATGT-GGATACACGATAATGAA
1 TCCATTCTTTTCAAGATTGGGCACCATAAACATATTCCCT-TCAT-TAGGATACAAGATATTGAT
* * * * *
63155 GCTTTGGTTTTGCAAGAAACGCATTT-TTTCTACCAATTTTTG-TA-AAGTCTAAGTTTGTACCT
64 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGTACCT
* * ** * **
63217 CAAATGAGACAAACATGGGTTCTAGTAATGATC
127 TAAATAAGACAAACATGAATTCTTGTACGGATC
* ** * * * * **
63250 TTCATTCATTTT-GGGATTAGGAACTACAAACGCATTCTCC-TCATTAGGATA-AATGATATTGA
1 TCCATTC-TTTTCAAGATTGGGCACCATAAACATATTC-CCTTCATTAGGATACAA-GATATTGA
* * * * * * ** * ** *
63312 TGATTT-TTTTTGCATGGAAATCTTTTCTTTGCC-TTATTTTCCT-TTA-AATCAAAGTTCATTC
63 TGCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAGAATCAAAGTTTGTAC
** ** *
63373 CTTAAATAAGACAAGGATCG-ATTCTCATAACAG-TC
125 CTTAAATAAGACAAACAT-GAATTCTTGT-ACGGATC
** * * * * *
63408 AACGTTCTTTTCAAGATTGGGAAGCCA-ATACACATT-CCTATCATTAGGATACAAGAAATTGAT
1 TCCATTCTTTTCAAGATTGGGCA-CCATAAACATATTCCCT-TCATTAGGATACAAGATATTGAT
* * *
63471 GCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATTAAAGTTTGT-CTCTT
64 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTAC-CTT
* *
63535 AAAAAAGAAAAAC
128 AAATAAGACAAAC
63548 GTGGATTAGG
Statistics
Matches: 1360, Mismatches: 411, Indels: 226
0.68 0.21 0.11
Matches are distributed among these distances:
156 2 0.00
157 59 0.04
158 541 0.40
159 676 0.50
160 66 0.05
161 12 0.01
162 4 0.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (159 bp):
TCCATTCTTTTCAAGATTGGGCACCATAAACATATTCCCTTCATTAGGATACAAGATATTGATGC
TTTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTACCTTAAA
TAAGACAAACATGAATTCTTGTACGGATC
Found at i:63005 original size:476 final size:476
Alignment explanation
Indices: 61350--137521 Score: 40797
Period size: 476 Copynumber: 160.7 Consensus size: 476
61340 AAAGCTTAAG
*
61350 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-TATTCGGATAAATGATATTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATTT
* * *
61414 TCTTTTACATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGGTCATTTCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * **
61479 GATAAGCATCGTTTCTCATAACAGTTTCCATTCTTTTCTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* *
61544 TTCATTAGGATACAAGACATTGATGCTTTGGTTTCGCAAGAAAAGCCTTTCTTTCCACCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
61609 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATGTACGGATCCCCACTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * *
61674 TCAAGATTTGGCATCATAAACATAATCTCCTCATTTGGATAAACGATATTGAAGTTTTGGCTTT-
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGG-TTTC
* * * *
61738 GCAAGAAAGGCTTTTTTCCCACCAGTTTTGGTTGAGTCTAAGTTCATGCCTCAAATAAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
61803 ATGGGTTCTAGTAGTAATCTTTA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * * * *
61826 TTCGTTTTGAGATAAGGAACTACAAACGTATACTCCTCATTAAGAGAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * *
61891 CTATTGC-TCG-AAATCTTTTCTTTGCCCTATTTTTCGTTAAATCAAAGTTCATTCCCTAAATAA
66 CTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * * * *
61954 GACAAGCCTTGATTCTCGTAACATTCTCAATTCTTTTCAAGATTGGGAAGCCAAACCAAATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * * *
62019 ATCATTAGGAAACAAGACATAGATGCCTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * **
62084 GATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACGTGTACGGATCCATATTCTT
260 GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
62148 TTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
62213 GTAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
62278 AAGGGTTCTAGTAATAATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** * * **
62301 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
62366 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* *** *
62431 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCC-AAACATAATTCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACA-CATTCC
* * * *
62495 CTTCATTAGGATGCAAGACATTGGTGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * *
62560 TGATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTACACGGATCCCTATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* ** * * *
62625 TTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTT
324 TTCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
*
62689 CACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*** * *
62754 CATCAATTTTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * * * * *
62778 TACAATTTGTGATTAGGCACTATAAACACATTCTCCGCTTTAGGATAAACGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
62843 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * **
62908 ACAAGCATCAATTCTTGTAACAGTCTCCATTCTTTTCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
*
62973 TCATCAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
63038 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
63103 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * *
63168 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTTGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
63232 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
63254 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
63319 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
63383 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
63447 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
63512 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
63549 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTAGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* ** * *
63612 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTAAGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
63677 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
63699 TTCATTTTGTGATTA-GACACTATAAACACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * *
63763 TCTTTTGCATGGAAATTTTTTCTTTGCCCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
63827 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
63892 TTCTTTAGGATACAAGACTTTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
63957 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *
64022 TCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
64087 CAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
64152 TGGGTTCTAGTAATGATGTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * * ** *
64174 CTT-AGTTTGGGATTAGGAAATAGAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
64234 TCTTTTGCAT-AGAAATCTTTTCTGTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATA
65 TCTTTTGCATGA-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATA
* * *
64298 AGACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
129 AGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * * *
64363 CTTCATTAGAATACAAGACATTGAGGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
64428 TGATAGAAATCAAAATTT-TCATCTTAAATAAGACAAACAAGAATACTTATATGGATCCCCATTC
259 TGATAG-AATCAAAGTTTGTC-TCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTC
* * * * * *
64492 TTTTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGT
322 TTTTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGT
* * * * * ** * *
64556 TTCTCAAGAAATGCATTATTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGAC
386 TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGAC
*
64620 AAACATGGGTTCTAGTAATGATCTTCA
450 AAACATGGGTTCTAGTAATAATCTTCA
* ** *
64647 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
64710 TTCTTTTGCACTG-AAATCGTTTCTTTGCCCCATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * * *
64774 AAAATAAGCATAGATTCCCGTAACAGTCTCTACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * *
64835 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
64900 TTGATAGAATCAAAGTTTCTCTTTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
64964 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACATACACGATATTGAAGCTCTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
*
65029 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
65094 CATGGGTTCTAGTAATAATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
** * * * *
65118 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
65183 CTTTCGCATCG-AAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAA
66 CTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * ***
65226 GACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
65291 TTCTTTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
65355 GATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * *
65397 TCAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAATGATATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * * *
65462 CAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGGGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
65527 TAGGTTCTAGTAATTATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * *
65549 TGCATTTTGGGATTAGGAACTACAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
65614 -TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
65678 ACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
65743 TCATTAGAATACAAGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTT-TTTTCATCCGTTTTT
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTT
* * * * * **
65807 GATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACGTGTACGGATCCATATTCTT
260 GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
65871 TTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
** * * * * * *
65936 ATAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
66001 AAGGGTTCTAGTAATAATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** * * **
66024 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * *
66089 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTTATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
66154 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* ** * *
66219 TTCATTAGGATGCAAGACATTGATGCTTTGGCATCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
66284 GATAGAATCAAAGTTTGTCTGTTAAATAAGACATACAAGAATACTTATATGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
66349 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
66413 ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
66478 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
66501 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
66566 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * **
66631 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
*
66696 TCATCAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
66761 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
66826 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * * ** *
66891 AAGAAACGC-ATTTTCTCTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGCTTTTTTC-CCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
66955 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
66977 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGA-TTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
67041 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * ** * * *
67105 ACAAGGATCAATTCTGATAACAGTCAACGTTCTTTTAAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
67169 ATCATTTGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
67234 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
67271 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* ** * *
67334 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTAAGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
67399 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
67421 TTCATTTTGTGATTA-GACACTATAAACACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * * * *
67485 TCTTTTGCATGGAAATTTTTTCTTTGCCTTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAT
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
67549 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAGGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
67614 TTCTTTAGGATACAAGACTTTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTT
* * * * * * * *
67679 T-ATAGAATCAAAGGTTGCCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * *
67743 TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
67808 GCAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
67873 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * ** *
67896 CTT-AGTTTGGGATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
67956 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
68020 GGCAAGCATCGATTCT-AGTAAAAGTCTCCATTGTTTTCTTA-ATTGGGAAGCCAAAACACATTC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTC-AAGATTGGGAAGCCAAAACACATTC
** * * *
68083 CCTTCATTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCATCATTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * *
68148 TTGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCTATGGATCCCCATTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * * * * *
68213 TTTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTT
323 TTTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTT
* * * * ** * *
68277 TCTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGACA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACA
*
68341 AACATGGGTTCTAGTAATGATCTTCA
451 AACATGGGTTCTAGTAATAATCTTCA
* ** *
68367 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
68430 TTCTTTTGCACTG-AAATCGTTTCTTTGCCCCATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * * *
68494 AAAATAAGCATAGATTCCCGTAACAGTCTCTACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * *
68555 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
68620 TTGATAGAATCAAAGTTTCTCTTTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
68684 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACATACACGATATTGAAGCTCTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
*
68749 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTT--TGCCTCGAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
68812 CATGGGTTCTAGTAATAATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
** * * * *
68836 TTCATTTTATGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
68901 CTTTCGCATCG-AAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAA
66 CTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * *** *
68944 GACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTAGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
69009 TTCTTTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
69073 GATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * *
69115 TCAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAATGATATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * * * *
69180 CAAGAAATGCATTTTTCCCACCAATTTTTGTAAACTCTAAGTTCATACCTCAAATGGGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
69245 TAGGTTCTAGTAATTATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * *
69267 TGCATTTTGGGATTAGGAACTACAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
69332 -TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
69396 ACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * * *
69461 TCATTAGAATACAAGACATTGATGCTTTCGTGTCGCAAGAAAAGCTTTTTTTTCCTCCGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * **
69526 ATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACGTGTACGGATCCATATTCTTT
261 ATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * *
69590 TTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTAAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
69655 TAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
69720 AGGGTTCTAGTAATAATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
** * * **
69742 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * *
69807 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTTATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
69872 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* ** * *
69937 TTCATTAGGATGCAAGACATTGATGCTTTGGCATCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
70002 GATAGAATCAAAGTTTGTCTGTTAAATAAGACATACAAGAATACTTATATGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
70067 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
70131 ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
70196 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
70219 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
70284 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * **
70349 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
70414 TCATCAGGAAACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
70479 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
70544 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * * ** *
70609 AAGAAACGC-ATTTTCTCTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGCTTTTTTC-CCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
70673 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* *
70695 TTCATTTTGGGATTAAGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGA-TTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
70759 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * ** * * *
70823 ACAAGGATCGATTCTGATAACAGTCAACGTTCTTTTAAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
70887 ATCATTTGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
70952 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
70989 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* ** * *
71052 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTAAGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
71117 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
71139 TTCATTTTGTGATTA-GACACTATAAACACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * * * *
71203 TCTTTTGCATGGAAATTTTTTCTTTGCCTTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAT
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
71267 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
71332 TTCTTTAGGATACAAGACTTTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCA-TTTT
* * * * * * * *
71397 T-ATAGAATCAAAGGTTGCCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * *
71461 TTCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
71526 GCAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
71591 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * ** *
71614 CTT-AGTTTGGGATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
71674 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ** *
71738 GACAAGCATCGATTCT-AGTAAAAGTCTCCATTGGTTTCTTA-ATTGGGAAGCCAAAACACATTC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTC-AAGATTGGGAAGCCAAAACACATTC
** * * *
71801 CCTTCATTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCATCATTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
*
71866 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATATGGATCCCCATTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * * * * *
71931 TTTCAAGA-TTGCGCACTATAAACATATTCCTCTCATGTGGATACACGATAATGAAGCTTTGGTT
323 TTTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTT
* * * ** *
71995 TTGCAAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACA
387 TCGCAAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACA
*
72059 AACATGGGTTCTAGTAATGATCTTCA
451 AACATGGGTTCTAGTAATAATCTTCA
* *
72085 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCCCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
72150 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * ** * *
72214 ACAAGGATCGATTCTCATAACAATCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
72278 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
72343 GATAGAATTAAAGTTTGTCTC-T---TAA-A-AAAGAA-AA-AC--AT--GG------A-----T
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * *
72385 T----A---GGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* ** * *
72443 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTAAGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
72508 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
72530 TTCATTTTGTGATTA-GACACTATAAACACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * *
72594 TCTTTTGCATGGAAATTTTTTCTTTGCCCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
72658 GACAAGCATCGATTCTCGTAACAGTATCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
72723 TTCTTTAGGATACAAGACATTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
72788 GATAGAATCAAAGTTTGTCTTTTAAATAAGGCAAACAAGAATACTTATATGGATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
72853 TCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTTTC
325 TCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * ** *
72917 TCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCAAATGAGACAAA
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACAAA
*
72981 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* ** *
73005 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
73068 TTCTTTTGCACTG-AAATCGTTTCTTTGCCCCATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * *
73132 AAAATAAGCATAGATTCCCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * *
73193 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
73258 TTGATAGAATCAAAGTTTCTTTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
73322 TTTCAAGATTAGGCACCATATACATAGTCTTCTCATTTACATACACGATATTGAAGCTCTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* *
73387 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTAAGTCTAAGTTCGTGCCTCGAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
73452 CATGGGTTCTAGTAATAATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * * * *
73476 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCGCTTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
73541 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * **
73606 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTTCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
73671 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
73736 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * *
73801 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATAAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** *
73866 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
73930 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
73952 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
74017 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTTATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
74081 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
74145 ATCTTTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
74210 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
74247 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* ** * *
74310 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTAAGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
74375 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
74397 TTCATTTTGTGATTA-GACACTATAAACACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * ** *
74461 TCTTTTGCATGGAAATTTTTTCTTTGCCTTCTTTT-CTTTAAATCAATCTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
74525 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
74590 TTCTTTAGGATACAAGACTTTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
74655 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *
74720 TCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * * *
74785 CAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAACTGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
74850 TGGGTTCTGGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * * * ** *
74872 CTT-AGTTTGGGATTAGCAAAATGCAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATT
1 -TTCATTTTGGGATTAG-GAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATT
* * *
74932 TTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAATA
64 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATA
* * *
74996 AGACAAGCATCGATTCT-AGTAAAAGTCTCCATTGTTTTCTTA-ATTGGGAAGCCAAAACACATT
129 AGACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTC-AAGATTGGGAAGCCAAAACACATT
** * *
75059 CCCTTCATTAGGATACGTGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATT
192 CCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT
* *
75124 TTTGATAGAATCAAAGTTTGTCTCTTAATTAAGACAAACAAGAATACTTATATGGATCCCCATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTC
* * * * * *
75189 TTTTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGT
322 TTTTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGT
* * * * ** * *
75253 TTCTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGAC
386 TTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGAC
*
75317 AAACATGGGTTCTAGTAATGATCTTCA
450 AAACATGGGTTCTAGTAATAATCTTCA
* ** *
75344 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ATTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
75407 TTCTTTTGCACT-AAAATCGTTTCTTTGCCCCATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * *
75471 AAAATAAGCATAGATTCCCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * *
75532 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * *
75597 TTGATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** *
75661 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACATACACGATATTGAAGCTTTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
*
75726 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
75791 CATGGGTTCTAGTAATAATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * *
75815 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
75880 CTTTTGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *** *
75924 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGATGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
75989 TCATTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
76053 ATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * *
76095 CAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAATGATATTGAAGCTTTGGTTTCGT
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * * * * * *
76160 AAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAACAA
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
76225 GGGTTCTAGTAATAATCTTAA
456 GGGTTCTAGTAATAATCTTCA
** * * **
76246 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
76311 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
76376 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
76441 TTCATTAGGATGCTAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
76506 GATAAAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
76571 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
76635 CCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
76700 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
76723 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
76788 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
76853 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTCCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
76918 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * * * *
76983 ATGGAATCAAAATTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * ** *
77047 CAAGATTAGGCACCATACACATAGTCTTCTCATTTACATACACGATATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
*
77112 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
77177 GGGTTCTAGTAATAATCTTCA
456 GGGTTCTAGTAATAATCTTCA
* * * * *
77198 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
77263 CTTTTGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *** *
77307 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGATGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
77372 TCATTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
77436 ATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * *
77478 CAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAATGATATTGAAGCTTTGGTTTCGT
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * * * * * *
77543 AAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAACAA
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
77608 GGGTTCTAGTAATAATCTTAA
456 GGGTTCTAGTAATAATCTTCA
** * * **
77629 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
77694 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
77759 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
77824 TTCATTAGGATGCTAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
77889 GATAAAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
77954 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
78018 CCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
78083 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
78106 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
78171 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
78236 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTCCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
78301 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
78366 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATAAGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * *
78431 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATAAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** *
78496 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
78560 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
78582 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
78647 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
78711 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
78775 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
78840 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
78877 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * *
78940 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTATGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
79005 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
79027 TTCATTTTGTGATTA-GACACTATAAGCACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * *
79091 TCTTTTGCATGGAAATTTTTTCTTTGCCCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
79155 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGTCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* ** * *
79220 TTCTTTAGGATACAAGACATTGATGCCCTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
79285 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
79350 TCAAGATTGGGCGCCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
79415 CAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
79480 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * ** *
79502 CTT-AGTTTGGGATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * *
79562 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAAAAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * **
79626 GACAAGCATCGATTCT-AGTAAAAGTCTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * * *
79690 CTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTGCTTTTCACCATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
79755 TGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATATGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
79820 TTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTTT
324 TTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* * * * ** * *
79884 CTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGACAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACAA
*
79948 ACATGGGTTCTAGTAATGATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* ** *
79973 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
80036 TTCATTTGCACTG-AAATCGTTTCTTTGCCCTATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * *
80100 AAAATAAGCATAGATTCCCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * **
80161 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGCTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * *
80226 TTGATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
80290 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACA-AACACGATATTGAAGCTCTCGTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAA-ACGATATTGAAGCTTTGGTT
*
80354 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
80419 ACATGGGTTCTAGTAATAATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* * * * *
80444 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
80509 CTTTCGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * ***
80553 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
80618 TAATTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
80682 ATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * *
80724 CAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * *
80789 AAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGGGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
80854 AGGTTCTAGTAATTATCTTGA
456 GGGTTCTAGTAATAATCTTCA
* * * *
80875 TGCATTTTGGGATTAGGAACTACAAATC-CATTCTCCTCATAAGGATAAATGATATTGGTGATTT
1 TTCATTTTGGGATTAGGAACTACAAA-CGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
80939 T-TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
81003 GACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
81068 TTCATTAGAATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *** * **
81133 GATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACACGTACGAATCCATATTCTT
260 GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
81197 TTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
81262 GTAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
81327 AAGGGTTCTAGTAATAATCTTAA
454 ATGGGTTCTAGTAATAATCTTCA
** * * **
81350 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
81415 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
81480 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
81545 TTCATTAGGATGCTAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
81610 GATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
81675 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
81739 ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
81804 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
81827 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
81892 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
81957 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTCCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
82022 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
82087 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
82152 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** *
82217 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
82281 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
82303 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
82368 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
82432 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
82496 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
82561 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
82598 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATATACGATATTAAAGCATCGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * ** * *
82661 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTAAGTCTATGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
82726 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
82748 TTCATTTTGTGATTA-GACACTATAAGCACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * *
82812 TCTTTTGCATGGAAATTTTTTCTTTGCCCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
82876 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACATATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
82941 TTCTTTAGGATACAAGACATTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
83006 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *
83071 TCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
83136 CAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
83201 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * * ** *
83223 CTT-AGTTTGGAATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
83283 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * **
83347 GACAAGCATCGATTCT-AGTAAAAGTCTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * *
83411 CTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * *
83476 TGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTCTATGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
83541 TTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTTT
324 TTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* * * * ** * *
83605 CTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGACAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACAA
*
83669 ACATGGGTTCTAGTAATGATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* ** *
83694 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
83757 TTCATTTGCACTG-AAATCGTTTCTTTGCCCTATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * * *
83821 AAAATAAGCATAGATTCCCGTAATAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * **
83882 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGCTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * *
83947 TTGATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
84011 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACA-AACACGATATTGAAGCTCTCGTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAA-ACGATATTGAAGCTTTGGTT
*
84075 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
84140 ACATGGGTTCTAGTAATAATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* * * * *
84165 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
84230 CTTTCGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * ***
84274 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
84339 TAATTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
84403 ATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * *
84445 CAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * *
84510 AAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGGGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
84575 AGGTTCTAGTAATTATCTTGA
456 GGGTTCTAGTAATAATCTTCA
* * * *
84596 TGCATTTTGGGATTAGGAACTACAAATC-CATTCTCCTCATAAGGATAAATGATATTGGTGATTT
1 TTCATTTTGGGATTAGGAACTACAAA-CGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
84660 T-TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
84724 GACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
84789 TTCATTAGAATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *** * **
84854 GATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACACGTACGAATCCATATTCTT
260 GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
84918 TTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
84983 GTAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
85048 AAGGGTTCTAGTAATAATCTTAA
454 ATGGGTTCTAGTAATAATCTTCA
** * * * **
85071 TTCATTTTTATGATTGGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
85136 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
85201 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
85266 TTCATTAGGATGCTAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
85331 GATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
85396 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
85460 ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
85525 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
85548 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
85613 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
85678 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTCCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
85743 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
85808 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
85873 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** *
85938 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
86002 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
86024 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
86089 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
86153 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
86217 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
86282 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
86319 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * *
86382 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTATGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
86447 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
86469 TTCATTTTGTGATTA-GACACTATAAGCACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * *
86533 TCTTTTGCATGGAAATTTTTTCTTTGCCCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
86597 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGTCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* ** * *
86662 TTCTTTAGGATACAAGACATTGATGCCCTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
86727 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
86792 TCAAGATTGGGCGCCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
86857 CAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
86922 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * ** *
86944 CTT-AGTTTGGGATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * *
87004 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAAAAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * **
87068 GACAAGCATCGATTCT-AGTAAAAGTCTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * * *
87132 CTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTGCTTTTCACCATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
87197 TGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATATGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
87262 TTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTTT
324 TTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* * * * ** * *
87326 CTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGACAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACAA
*
87390 ACATGGGTTCTAGTAATGATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* ** *
87415 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
87478 TTCATTTGCACTG-AAATCGTTTCTTTGCCCTATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * *
87542 AAAATAAGCATAGATTCCCGTAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * **
87603 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGCTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * *
87668 TTGATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * *
87732 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACA-AACACGATATTGAAGCTCTCGTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAA-ACGATATTGAAGCTTTGGTT
*
87796 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
87861 ACATGGGTTCTAGTAATAATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* * * * *
87886 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
87951 CTTTCGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * ***
87995 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTTGTTGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
88060 TAATTAGGATACAAGATATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCTACC-GTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
*
88124 ATAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * *
88166 CAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * *
88231 AAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGGGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
88296 AGGTTCTAGTAATTATCTTGA
456 GGGTTCTAGTAATAATCTTCA
* * * *
88317 TGCATTTTGGGATTAGGAACTACAAATC-CATTCTCCTCATAAGGATAAATGATATTGGTGATTT
1 TTCATTTTGGGATTAGGAACTACAAA-CGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
88381 T-TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
88445 GACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
88510 TTCATTAGAATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *** * **
88575 GATAGAATCAAAATTT-TCCTCTTAAATAAGACAAACATGAGTACACGTACGAATCCATATTCTT
260 GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
88639 TTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
88704 GTAAGAAAAGCTTTTTTCTCACCAGTTTTTTTTCAATCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
88769 AAGGGTTCTAGTAATAATCTTAA
454 ATGGGTTCTAGTAATAATCTTCA
** * * **
88792 TTCATTTTTATGATTAGGCACTATAAACATATTCTCCTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
88857 TCTTTTGCATGAAAATCTTTTCTTTGCCCAATTTTCCTTTAAATCAAAGTTCATACTTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* ***
88922 GACAAGCATCGACTCTCATAACAGTCTCCATTCTTTTGTTGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
88987 TTCATTAGGATGCTAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
89052 GATAGAATCAAAGTTTGTCTGTTAAATAAGACAAACAAGAATACTTATACGGATCCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* ** * * *
89117 TCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTTTGGTTTC
325 TCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
*
89181 ACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*** * *
89246 ATCAATTTTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * ** * *
89269 TACATTTTGTGATTAGGCACTATAAACACATTCTCCGATTTAGGATAAACGATATTGATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
89334 CTTTTGCATGAAAATCTTTTATTTGCCCCATTTTCCTTTAAATCAAAGTTCATACCTTCAATAGG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
89399 ACAAGCATCAATTCTCGTAACAGTCTCCATTCTTTCCAGGATTGGGAAGCCAAAACACATTTTCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
89464 TCATCAGGATACAAGACATTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * *
89529 ATGGAATCAAAATTTGTCTTTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
89594 CAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTTGGTTTTGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** *
89659 AAGAAACGCATTTTTT-CTACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAAGGC-TTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
89723 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
89745 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
89810 -TTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
89874 ACAAGGATCGATTCTCATAACAGTCAACGTTCTTTTCAAGATTGGGAAGCCAATACACATT-CCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
89938 ATCATTAGGATACAAGAAATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTT
196 -TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
90003 GATAGAATTAAAGTTTGTCTC-T---T---A-AAA-AAGAA-A---A-AC-G-------------
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
90040 T--GGATTAGGCACTATAAACATAGTCTTCTCATTTGGATACACGATATTAAAGCATCGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * *
90103 CAAGAAAGGCTTTTTTCCCACCAATATTTGTTGAGTCTATGTTCACGCCTTAAATGAGATAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * *
90168 AGGGTTCTAGTAATGATCTTCT
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
90190 TTCATTTTGTGATTA-GACACTATAAGCACGTTCTTCTCTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * * * * *
90254 TCTTTTGCATGGAAATTTTTTCTTTGCTCTCTTTT-CTTTAAATCAATGTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
90318 GACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTTAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
90383 TTCTTTAGGATACAAGACATTGATGCCTTGGTGTCCCAAGAAAAGCTTTTCTTTCCACCAGTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
90448 GATAGAATCAAAGTTTGTCTTTTAAATGAGGCAAACATGAATACGTATACGGATCCCCATTTTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *
90513 TCAAGATTGGGCACCATAAACATAGTCTTCTCCTTTGGGTACACGATATAGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * * *
90578 TAGGAAAAGCTTTTTTCCCACCAATTTTTGTTGAGTCTAGGTTCATGCCTTAAATGAGGCAAGCA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
90643 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * ** *
90665 CTT-AGTTTGGGATTAGGAAATACAAA--CA--ATCCTCACTAGGATAAATGATATTGAGGATTT
1 -TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
90725 TCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCTTTTAAATC-AATTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * **
90789 GAGAAGCATTGATTCT-AGTAAAAGTCTCCATTGTTTTCTTGATTGGGAAGCCAAAACACATTCC
130 GACAAGCATCGATTCTCA-TAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * *
90853 CTTCATTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTTCACCATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
90918 TGATATAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATATGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
90983 TTCAAGA-TTGCGCACTATAAACATAGCCTTCTCATGTGGATACACAATATTAAAGCTTTGGTTT
324 TTCAAGATTTG-GCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* * * * ** * *
91047 CTCAAGAAATGCATTTTTGCCACCAATTTTTGTAAAG-CATAAGTTCGTACCTCGAATGAGACAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTC-TAAGTTCGTGCCTCAAATGAGACAA
*
91111 ACATGGGTTCTAGTAATGATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* ** *
91136 TTTATTTTGGGATTAGGAACTACAATTGCATTCTCCT-TATTAAGATAAAT-ACTATTGATGATT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGA-TATTGATGATT
* * *
91199 TTCTTTTGCACTG-AAATCGTTTCTTTGCCCCATTTTCCTGTAAATCAAAGTTCATTCCTTAAAT
64 TTCTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * * * * * *
91263 AAAATAAGCATAGATTCCCGTAATAGTCTCCACTCTTTTCAAGATTGGGAAGCC---A-ATATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * *
91324 CCATCATTAGGATACAAGACATTGAGGCTTTGGTGTCGCATGAAAAGCTTTTCTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * *
91389 TTGATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACATGAATACATGTACGG-TCCCCACTCT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * * *
91453 TTTCAAGATTAGGCACCATACACATAGTCTTCTCATTTACATACACGATATTGAACCTCTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
*
91518 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCGAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
91583 CATGGGTTCTAGTAATAATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * *
91607 TTCATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
91672 CTTTCGCATGGAAAT-TTTTCTTTG--C-A-----C------T---A-TT--TTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * * *
91716 ACAAGTATCGATTCTCGTAACAGTTTCCACTCTTTT-ATTGATTAGGAAGCCAAAACACATTCCC
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTGGGAAGCCAAAACACATTCCC
* * * * *
91780 TTAATTAGGATACAAGATATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCTACC-GTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
91844 GACAGAATCAAAGTTTG-----T--AT--------C-TG-ATAC---T---GATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * *
91886 TCAAGATTGGGCACCATAAACCTAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * * *
91951 CAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCATACCTCAAATGGGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
92016 TAGGTTCTAGTAATTATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * *
92038 TGCATTTTGGGATTAGGAACTTCAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
92103 -TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
92167 ACAAGCATCAATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
92232 TCATTAGAATACAAGGCATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * * * * * **
92297 ATAGAATCAAAGTATGACTCTAAAATACGAAAAACGTGAATGCTCATGCTGATCCCCATCCCCAT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC---AA-G--AATACTTATACGGATCCCCAT
* * * * *
92362 TCTTTTCAAGATTGGGCACCATAAACATAGTCTTCTCATTAGGATACATGATATTGATGCTTTGG
320 TCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGG
* * * ** * * * * *
92427 TTTTGCAAGAAATGCGTTTTTCCCACCAATTTTTGTAAAGCCTAAGTTCAT--TTTAGGATTAGG
385 TTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCA--A--ATG
* *** * * * *
92490 AACTACAAACGCATTCTCCTTACTCGGATAAATGATATTGA
446 -A-GACAAA--CA-T-GGGTT-CT-AG-T-AATAATCTTCA
* *** * ** * ** * **** * * * *
92531 -TGATTTT-CTTTTA-CATGTA-AATC-TTTTCTTTGCCCTATTTCCCTTTAAATCA-A-AGTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTC--T--CCTCTTT-AGGATAAATGATATTGATG
* **** * * * ** * * * **
92589 A-TTCCTTAAATAAGACAAGCATCGTTTCTCAT-AAC-AATCT-C-TTAAAT--AAG-ACA-AAC
61 ATTTTCTTTTGCATGA-AA--ATCTTTTCT-TTGCCCTATTTTCCTTTAAATCAAAGTTCATTCC
* * * * * * * * * * * * * * ***
92645 ATGAACACGA-AATTGTTGCTTTGGTATCGTAAGAAAAG-CT--TTTCTTTCCACCGTTTTTTAT
122 TTAAATAAGACAA-----GCATCGAT-TC-TCATAACAGTCTCCATTCTTTTCA-AGATTGGGA-
** ** ** * * * * ** * ***
92706 AG--AATTAA-AGTTTGTC-TC-TTAAAAAAGAA-AAATTTGA-AC--ACGTGTACGGATCCCAA
178 AGCCAA--AACACATTCCCTTCATTAGGATACAAGACA-TTGATGCTTTGGTGT-CGCA-AGAAA
** * * * * ** *
92762 TTCTTTTCAAGATTAGGCACTATACACATAGTCTTCTCATTTGGATACACGGTATTGAAGCT-TT
238 AGCTTTTC----TT--TC-C---AC-CAT--T-TT-TGA-TAGAAT-CAAAGT-TTG--TCTCTT
*** ** ** * * ** * * * * *
92826 GGTTTCG-CAAGA-AAGGCT--TTTTTCCCA--CCAATT-TTTGTCGAGTCTAAGTTCGCGCC-T
283 AAATAAGACAA-ACAAGAATACTTATACGGATCCCCATTCTTT-TCAAG----ATTTGGCACCAT
* *** * * * * * ** * * **
92883 CAA-ATGAGATAAAC-AAGGGTTCTAG-T-AATGATCTTCATTCATTTTGTGATTAGACACTATA
342 AAACAT-AG-TCTTCTCA---TT-TGGATAAACGATATTGAAGC--TTTG-GTTTCG-CAAGA-A
*** * ** ** * * * * ***
92944 A-GC-ACATTCTCC-TC--TTTAGGATAAAAGATACTGACGATTTTCTTTTGCATGAAAATTTTT
396 AGGCTTTTTTC-CCACCAATTTTTG-T-TGAG-T-CT-A--A-GTTC--GTGCCT-CAAA-TGAG
* ** ** * **
93004 TCATTGCCCTAT-TTTTTTA--AATCAAAGTTCA
448 ACA---AAC-ATGGGTTCTAGTAAT-AATCTTCA
* * * ** ** * * * **** *
93035 TACCTTAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCCTTTTAAGATTGGGAAGCCA
1 TTCATT--TTGGGATTAGGAACTACAAACG---CATTCTCC--T-C-TTT---A----G--G---
* ** * * * *
93100 AAACACATTCTCTTCTTTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
45 ATA-A-A---TGAT-ATT--GAT----G--ATT--TTC-TT--T-T-GCATGAAAATCTTTTCTT
* * * * * * * *
93165 T-CCACCATTTT--TGATATAATCAAAATTTA-CCTCTTAAATAAGACAAACAT-GAATACGT-G
89 TGCC-CTATTTTCCT-TTA-AATCAAAGTTCATTC-CTTAAATAAGACAAGCATCG-ATTC-TCA
* * * * * *
93224 T-ACGGATC-CACATTCTTTTCAGGATTGGGCA-CCATAAACATAGT--CTTCTGATTTGGATA-
148 TAACAG-TCTC-CATTCTTTTCAAGATTGGGAAGCCA-AAACACATTCCCTTC--ATTAGGATAC
* * * * * * * *
93283 AACGATATTGAAGCTTTGGTTTTGCAAGAAAAGC-TTT-TTTCCCCCTAGTTTTT--TTGAGTCT
208 AA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-A-TTTTTGATAGAATCA
* * * * ** * *** ** ***
93344 AAGTTCATG-C-CTCAAATGAGACAAATATGGTTTC-TAGTAATAATCTTCATTCGTTTTTGTGA
270 AAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTTA-TACGGATCCCCATTC-TTTTCAAGA
* * * * * * * ** * *
93406 TTAGGCACTC-TAAACATATTCTCCTC-TTTAGGGTAAATGATATTGATGATTTTCTTTTGCATG
331 TTTGGCAC-CATAAACATAGTCTTCTCATTT-GGATAAACGATATTGAAGCTTTGGTTTCGCAAG
** ** * * * * ** * * * * * * *
93469 AAAATCTTTTCTTTGC-TCTATTTTCTTTTAAACCAAAGTTCATACCTTAAATAAGACAAGCATC
394 AAAGGCTTTT-TTCCCACCAATTTT-TGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATG
* * * * *
93533 GTTTCTCGTAACAGTCTCCA
457 GGTTCTAGTAATAATCTTCA
** * * * * *
93553 TTC-TTTTCTTGATTAGGAAGCCA-AAACACATTC-CCTTCATTAGGATACAA-GACATTGATGC
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCC-TCTTTAGGATA-AATGATATTGATGA
** * * * * * *
93614 TTTGGTGTTGAAAGAAAAGCTTTTCTTT-CCACCATTTT--TGGTAGAATCAAAG-TC-TGT-C-
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCT-TTA-AATCAAAGTTCAT-TCCT
* * * *
93672 T--CT--GA-TA-C--CGA-TC-C----C-G-----ATTCTTTTCAAGTTTGGGCA-CCATAAAC
123 TAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA-AAAC
** ** ** * * * * *
93716 GTAGTTTGC-TCATTTCGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGC-TTT-TTTCT
187 ACA-TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC-
* * * * * * * * * **
93778 CACCAATTTTTGTTA-AGTCTAAGTTCGTGC-CTCAAATAAGACAAACATCG-GT-TTTGGTAAT
250 CACC-ATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAATACTT-ATACG
** * ** * * * * * *
93839 GATCTTTACA-TATTTT-GTGATTAGGCACAATAAACACATTCTCCTC-TTTGGGATAAATGATA
311 GATC--CCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT-GGATAAACGATA
* ** * * ** ** * * * *
93901 TTGATA-ATTTTCTTTTGCATCGAAA-TATTTTTTTGC-CCTATTTTCCT-TTAAATCAAAGTTC
373 TTGA-AGCTTTGGTTTCGCA-AGAAAGGCTTTTTTCCCACCAATTTT--TGTTGAGTCTAAGTTC
* ** * * * * * * * *
93962 ATATCTTAAATAAGACAAGCATCGATTCTCA-TAACAGTCTCCA
434 GTGCCTCAAATGAGACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * * ** * *
94005 TTC-TTTTCAAGACT-GAGAAGCCA-AAACACAATTC-CTTCATTAGGATGCATGACATTGATGC
1 TTCATTTT-GGGATTAG-GAA-CTACAAACGC-ATTCTCCTCTTTAGGATAAATGATATTGATGA
** * * * * * **
94066 TTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT-TTTT--GATAGAATCAAAGTT--TGTCTC
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTTA-AATCAAAGTTCAT-TC-C
* * * * * * * *
94126 TAAAATAAGACAAACA-AGAATACTTAT-ACGGATCCCCATTCTTTTCAAGTTTGGGAA-CCATA
122 TTAAATAAGACAAGCATCG-ATTCTCATAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-A
** ** * * * * * * * *
94188 AACTTAGTTTTC-TCATTTGGATACAGGATATTAAAGCTTTGGTTTCACAAGAAATGC-TTT-TT
184 AACACA-TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTT
* * * * * * * * ** *
94250 TCTCACCAATTTTTG-TTGAGTCTAAGTTCGTGC-CTCAAATGAGTCAAACATGGGTTC-TAGTA
248 TC-CACC-ATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTA-TA
** ** ** * * * * * * * *
94312 ATGATCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTC-TTTAAGACAAATGAT
309 CGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT-GGATAAACGAT
* ** * ** ** * * * * * * *
94375 ATGGGTGATTTTCTTTTTCATGGAAA-CCTTCTCTTT-GC-CCTATTTTCCT-TTAAATCAAAGT
372 ATTGAAGCTTTGGTTTCGCA-AGAAAGGCTT-T-TTTCCCACCAATTTT--TGTTGAGTCTAAGT
* * * * * * * * * * * *
94436 TCATTCCTTAAATAAGATAAGCATCGATTCTCGTAACAGTCTCCA
432 TCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
** * * ** * * * *
94481 TTC-TTTTCTTGATTTGGAAGCCA-AAATACATTC-CCTTTATTAGGATACATGACATTAATG-T
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGAT
* * * * * * * * *
94542 TTTGGTGTTGCAAGAAAAACTTTACTTT-CCACCA-TTT-CTGATAGAAACAAAGTT-TTTCTCT
63 TTT-CTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCT-TTA-AATCAAAGTTCATTC-CT
* * * * * * * * * **
94603 CAAACAAGACAAAC-TTGAATACTCAT-ACTAATCCCCATTATTTTCAAGATTTGCCA-CCATAA
123 TAAATAAGACAAGCATCG-ATTCTCATAAC-AGTCTCCATTCTTTTCAAGATTGGGAAGCCA-AA
* * * * * * ** * * * * * *
94665 ACAAAGT-CTTCTCATTAGGGTACATGATACGGATGCTTTGATTTTGCAAGAAATGCGTTT-TTC
185 ACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* ** * * * * * ** * * *
94728 CCACCAATTTTT-AT-GAAGTCTAAGTTCATAC-CTCAAATGACATAAACATGGGTTC-TAGCAA
249 CCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTA-TAC
* ** ** * * * * *
94789 TGATCTTCATTCATTTT-GGGATTAT-GAACTACAAATGCAT--T-TTCTACATTAGGATAAATG
310 GGATCCCCATTC-TTTTCAAGATT-TGGCACCATAAA--CATAGTCTTCT-CATTTGGATAAACG
* * ** * * ** ** * * * *
94849 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TTAAATCAAAGT
370 ATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTAAGT
* * * * * ** * * * *
94912 TCATTCTTTAAATAAGACAGGCACT-GATTCTCGTAACAGTC-TCAA
432 TCGTGCCTCAAATGAGACAAACA-TGGGTTCTAGTAATAATCTTC-A
** * * * * * * *
94957 TTC-TTTTCAAGATTGGGAAGCCA-AAACACATTC-CATTCATTAGGATACAA-GACATTGATGC
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTC-CTCTTTAGGATA-AATGATATTGATGA
** * * * * ** *
95018 TTTGGTGTTGCAAGAAAAGCTTTTCTTT-CCACTGTGTTT--GATAGAATCAAAGTTTA-T-CTT
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTAT-TTTCCTTTA-AATCAAAGTTCATTCCTT
* * * * * * * * * *
95078 AAATAAGAAAAACAT-GA--GT-GT-ACGGATCCCCATTATTTTCAAGATTGCGCA-TCATAAAC
124 AAATAAGACAAGCATCGATTCTCATAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAAC
* * * * * * * * * * *
95137 ATAGT-CTTCTCATTTGGATA-AACGATATTGAAGTTTTTGCT-TCACAAGAAAGGCTTTT-TTC
187 ACATTCCCT-TCATTAGGATACAA-GACATTGATG-CTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * * * * * * * * **
95198 CCACCAGTTTTGGTTGAGTCTAAGTTCATG-C-CTCAAATGAGACAAACATGGATTC-TAGTAAT
249 CCACCATTTTTGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACTTA-TACG
* ** * * ** * * * * ** * * *
95260 AATCTTCTTTCAATTT-GTGATTAGGAACTACAAACGCA-TTTTCCTCATTAGGATAAATGATAT
311 GATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTT-CTCATTTGGATAAACGATAT
* * ** * * * ** * * * * *
95323 TGATGATTTTCTTTTGCATGGAAA-TCTTTTCTTTAC-CCTATTTTCCT-TTAAATCAAAGTTCA
374 TGAAGCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTAAGTTCG
* * * * * * * *
95385 TTCCTTAAATAAGACAAGCCTTGATTCTCA-TAACAATC-TCAA
435 TGCCTCAAATGAGACAAACATGGGTTCT-AGTAATAATCTTC-A
** * ** * *
95427 TTC-TTTTCAAGATTAGGAAACCA-AAACAAATTC-CCATCATTAGGATACAA-GATATTGATGC
1 TTCATTTT-GGGATTAGG-AACTACAAACGCATTCTCC-TCTTTAGGATA-AATGATATTGATGA
* * ** * * ** * *
95488 TTTTGTGTCACAAGAAAAGCTTTTCTTT-CTACCGT-TTTT--GATAGAATCAAAATT--TGCCT
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGC--CC-TATTTTCCTTTA-AATCAAAGTTCATTCC-
* * * ** * *
95547 TTTAAATAAGACAA--ATAAGAATACGT-GT-ATGGATC-CACATTCCTTTCAAGATTGGGCA-C
122 -TTAAATAAGACAAGCAT-CG-ATTC-TCATAACAG-TCTC-CATTCTTTTCAAGATTGGGAAGC
* * * * * * *
95606 CGTAAACATAGT--CTTCTGATTTGGATA-AACGATATTGAAGCTTTGGTTTCGCAAGAAAAGCT
181 C-AAAACACATTCCCTTC--ATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * * * ** * ** *
95668 TTT-TTCCCACCAATTTTT--TTGAGTCTAAGTTCGTGC-CTCAAATGTGACAAACATGGGTTC-
242 TTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACT
*** * *** * * * * *
95728 TAGTAATAATCTCCATTCATTTTTGTGATTCGGCACTATAAACACATTCTCCTC-TTTAGGATAA
305 TA-TACGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT-GGATAA
* * ** * * * ** * * * *
95792 AGGATATTGATA-ATTTTCTTTTGCATCGAAA-TCTTTTATTTGC-CCAATTTTTCTTTAAATCA
367 ACGATATTGA-AGCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCCCACCAATTTTT-GTTGAGTCT
* * * * * * * * * *
95854 AAGTTCATACCTTAAATAAGACAAGCATCGATTCTCA-TAACAGTCTCCA
428 AAGTTCGTGCCTCAAATGAGACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * * * **
95903 TTC-TTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTGGGATACAA-GGCATTGATGAT
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCCTCTTTAGGATA-AATGATATTGATGAT
** * ** * * ** * *** **
95965 TTGGTGTCACAAGACAGGCTTTTCTTT-CCTCCATTTTTGATGGAATCAAAGTT--TGTCTCTTA
63 TTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCTTTAAATCAAAGTTCAT-TC-CTTA
* * * * *
96027 AATAAGACAAACA-CGAATAC-C-TATACGGATCCCCATTCTTTTCAAGATTGGGCA-CCATAAA
125 AATAAGACAAGCATCG-ATTCTCATA-ACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAA
* * * * * * * * * *
96088 CATAGT-CTTCTCATGT-GGATACACGATATTGAAGCTTTGGTTTTGCAAGAAAAGCATTT-TTC
186 CACATTCCCT-TCAT-TAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
* * * ** * ** * *
96150 CCACCAATTTTTG-TA-AAGTCTAAGTTCGTAC-CTCAAACGAGACAAACATGGGTTC-TAGTAA
249 CCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTA-TAC
* ** ** * * ** * * * * ** *
96211 TGATCTTCATTCATTTT-GGGATTAGGAAGTACAAACACATTCTCCTCATTACGATAAATGATAT
310 GGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATAT
* * ** * * ** * * * * **
96275 TGATGATTTTCTTTTGCATAGAAA-TCTTTTCTTTGC-CCTATTTTCCT-TTAAATCAAAGTTTA
374 TGAAGCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTAAGTTCG
* * * * * * * * *
96337 TTCCTTAAATAAGACAAGCATCGATTCTCA-TAACAGTCTCCA
435 TGCCTCAAATGAGACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * *
96379 TTC-TTTTCAAGATTTGGAAGC--CAATACACATTC-CCATCATTAGGATACAA-GAAATTGATG
1 TTCATTTT-GGGATTAGGAA-CTACAA-ACGCATTCTCC-TCTTTAGGATA-AATGATATTGATG
* ** *** * * * * ** * *
96439 CTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCGT-TGTT-GATAAAACCAAAGTT--TGTCCT
61 ATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTTAAATCAAAGTTCAT-TCC-
* * * * * * * * * *
96500 TTAAAAAAGAAAAACAT-GAATACGT-GT-ACGGATCCCCATTCTTTTCAAGATTAGGCA-CCAG
122 TTAAATAAGACAAGCATCG-ATTC-TCATAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCAA
*** * * * * * * *
96561 AAC-CATAGTCTTCGCATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAAGGC-TTT-T
184 AACACATTCCCTT--CATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * * * * * ** * *
96623 TCCCCCCAATTTTTG-TTGAGTCTAAGTTCGTGC-CTCAAATGAGACAAACATGGGTTC-CAGTA
247 TTCCACC-ATTTTTGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTA-TA
** ** ** * * * * * * *
96685 ATGATCTTCATTCATTTT-GTGATTAGACACTATAAACACATTCTCCTC-TTTAGGATAAATGAT
309 CGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT-GGATAAACGAT
* * * ** * * * * * **
96748 ACTGATGGTTTTCTTTTGCATGGAAA----TTTTT-CCATTGCCCTATTTTCT-TTAAATGAAAG
372 ATTGAAGCTTTGGTTTCGCA-AGAAAGGCTTTTTTCCCA----CCAATTTT-TGTTGAGTCTAAG
* * * * * * * * * * * * *
96807 TTCATACTTTAAATAAGACAAGCATCGATTCTCGTGACAGTCTCCA
431 TTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
** * * * * * * *
96853 TTC-TTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACAA-GACATTGATGCT
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCCTCTTTAGGATA-AATGATATTGATGAT
** * * ** * ** *
96915 TTGGTGTTGCAAGAAAAGATTTTCTTTCCACCGT-TTTT--GATAGAATCAAAGTT--TGTCTTT
63 TTTCTTTTGCATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTTA-AATCAAAGTTCAT-TCCTT
* * * * * *
96975 AAATAAGACAAACAT-GAATACGT-AT-ACGGATCCCCATTCTTCTCAAGATTGGGCA-CCATAA
124 AAATAAGACAAGCATCG-ATTC-TCATAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AA
* * * * * * * * * * * * *
97036 ACATAGT-CTTCTCATTTGGATACACGATATTGAAGCTTTGATTTAGTAAGAAAAGCATTT-TTC
185 ACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT
** * * * * * ** *
97099 CCACCAATTTTTGCA-A-AGCCTAAGTTCGTGC-CTCAAA-AGGAACAAACATGGGTTC-TAGTA
249 CCACC-ATTTTTG-ATAGAATCAAAGTTTGT-CTCTTAAATAAG-ACAAACAAGAATACTTA-TA
** * * * * * ** * *
97159 ATGATCTTCTTGCACTTTGGAATTTGGAACTACAATGGGATTTGGAACTACAAACGCATTCTCCT
309 CGGATC--C---C-CATT---CTTT-----T-CAA---GATTTGGCACCATAAACATAGTCTTCT
* * ** ** * * * *** **
97224 C-TTTAGGATAAATGACATTGATGATTTTTCTTTTCCATCGATTCTCATAACAGTCTCCATTCTT
356 CATTT-GGATAAACGATATTGA--AGCTTT-GGTT---TCG---C-AAGAA-AGGCTTTTTTCCC
* ** * * * *** * * *** * * *
97288 TCCAAGATTAG--GAAGCCAAAACACTTTTCCTTCTTTTGGATACAAGACATTGATGCTTTGGTA
409 ACCAATTTTTGTTG-AGTCTAAGTTC-GTGCC-TCAAAT-GAGACAA-ACA-TG--G-GTT-CTA
* * *
97351 TTGCAAGAAATGCTTTCTT
464 --GTAA-TAAT-C-TTC-A
*** **** * * * * ** **
97370 TTCTACCGTTTTTTATACAATTAAAGTTTGTATAATCCCCATTATTTTCAAGATTTGCCACCATA
1 TTC-A------TTT-TGGGATT--AGGAACTACAA-ACGCATTCTCCTC----TTT---AGGATA
* * ** * * *
97435 AA-CAAAGTCTTCTCATTAGGGTACATGATACTGATGCTTTGATTTTGCAAGAAATGCGTTT-TT
48 AATGATA-T-TGATGATT----TTC-T--T--T--TGC----A---TG--A-AAAT-CTTTTCTT
** * * * * * * * * * * * *
97498 CCCACCAATTTT--TGTGAAGTCTAAGTTCATACCTCAAATGAGATAAACATGGGTTCT-AGCAA
89 TGC-CCTATTTTCCT-TTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCA-TAA
* * * * * * *
97560 -TGATCTTCAGTCATTTTGC--GATTTGG-CGCTATAAACACATTCTCC-TCTTTAGGATA-AAT
151 CAG-TCTCCATTC-TTTT-CAAGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATACAA-
** * ** * * * * * * * ** * *
97619 GATGTTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGC-CCTTTCTTTCTCTA-TATCAAAA
210 GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATT-TTT-GATAGAATCAAAG
** * * * * * *
97682 TTCATAC-CTTAAATAAGACAAGCATCG-ATTCTCGTAATA--G-TCTCTATTCTTTTCTAGATT
273 TTTGT-CTCTTAAATAAGACAAACA-AGAATACT--T-ATACGGATCCCCATTCTTTTCAAGATT
* * * * ** * * * * *
97742 AGGAAGCCA-AAACACATTCCCCTCATTAGGATACAA-GACACTGATGCTTTGGTGTCGCAAGAA
333 TGGCA-CCATAAACATAGTCTTCTCATTTGGATA-AACGATATTGAAGCTTTGGTTTCGCAAGAA
* * * * * * * ** * *
97805 AAGCTTTTCTTTCCACC-GTTTTTAATAGAATCAAAGTTTAT-CTCTTAAAT-ATGACAAACGTG
396 AGGCTTTT-TTCCCACCAATTTTT-GTTGAGTCTAAGTTCGTGC-CTCAAATGA-GACAAACATG
** * * * *
97867 AATACTCA-TACTGATC-CCTA
457 GGTTCT-AGTAATAATCTTC-A
** * * * * ** * * * * * * * * **
97887 TT-ATTTTCAAGATTCGGCACCATAAACATAGTGTTCTCCTAAGGATACATCATATTGAAGCCTT
1 TTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
** * * ** *** * * * * * *
97951 GGTTTCGCAAGAAAGGCTTTTTCCCAG-CCAATTTT--TGTAAAGTCTATGTT-TTTGCCTCAAA
65 TCTTTTGCATGAAAATC-TTTTCTTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATT-CCTTAAA
* * * * * ** * * * *
98012 TGAGACAAACATGGATTCT-AGTAA-TGCTCTTCATTCATTTT-GTGATTAGGCA-CTATAAACT
127 TAAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGCCA-AAACA
* * *** * ** * ** * * * *
98073 CATTCTCTT-ATCTTGGATA-AATGATGCTGATGATTTTCTTTTACATGGAAATCTTTTCTTTTC
188 CATTCCCTTCAT-TAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* ** ** * ** * *
98136 -CCTTTTTTCCTTTA-AATCAAAGTTCATAC-CTTAAATAAGACAAGCATCAATTCTCGTA-ACA
251 ACCATTTTT--GATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACT--TATACG
** * * * * * * * * * * * * *
98197 G-TTTCCAGTCGTTTCTAGATTGGGAAGCCA-AAACACATTC-CCTTCGTTGGGATACATGACAT
311 GATCCCCATTCTTTTCAAGATTTGGCA-CCATAAACATAGTCTTC-TCATTTGGATAAACGATAT
* * * * * * * * * *
98259 TGATGCTTTGGTGTCGCAAGAAAAGCTTCTCTTT-CCAAC-GTTTTTAATAGAATCAAAGCTT-A
374 TGAAGCTTTGGTTTCGCAAGAAAGGCTT-T-TTTCCCACCAATTTTT-GTTGAGTCTAAG-TTCG
* ** * * * **
98321 T-CTCTTAAAT-ACGACAAACATGAATACTCA-TACTGATCCCCA
435 TGC-CTCAAATGA-GACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * * *
98363 TTC-TTTTCACGATTGGGCACCATAAACATAGCATTCT-C-C-TTAGGATACATGATATTGATGC
1 TTCATTTT-GGGATTAGGAACTACAAAC---GCATTCTCCTCTTTAGGATAAATGATATTGATGA
** * * ** * * * * * * * ** *
98424 TTTGGTTTCGCAAGAAAGGC-GTT-TTTCCCACGAATTTT--TGTATAGTCTAAGGTCACACCTC
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-C-TATTTTCCTTTA-AATCAAAGTTCATTCCTT
* * * * * * * ** *
98485 AAATGAGACAAACATGGATTAT-AGTAA-TGATCTTCATTCATTTT-ATGATT-ACACA-CTATA
124 AAATAAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGA-AGCCA-A
* * * * * ** * * * * *
98545 AACACATTCTCCTT-TTTTGGGTA-AATGATATTGATGATTTTCTTTAGCATGGAAATCTTTTCT
184 AACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * ** * * * *
98608 TTGCTCTATTTTCCT-TTA-CATCAAAGTTCATAC-CTTAAATAAGACAAGCATCG-ATTCTTCT
247 TTCCACCATTTT--TGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAATACTTAT
* ** * * * * * * * *
98669 AACAG-TGTCTATTCTTTTCAAGATTGGGAAGCTAAATAACAT--TCCTT-TCATTAGGATACAT
308 -ACGGATCCCCATTCTTTTCAAGATTTGGCA-CCATA-AACATAGT-CTTCTCATTTGGATAAAC
* * * * * * * ** ** * * * *
98730 GACATTGATGGCTTGGGGTT-GTAAGAAAAGCTTTTCTTTCCTTCGTTTTTTATAGATTCAAAGT
369 GATATTGA-AGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTTGAGTCTAAGT
** ** * * * ** * *
98794 TTATTTCTTAAATAAAACAAACATGAATACT--TATATAGATC-CCTA
432 TCGTGCCTCAAATGAGACAAACATGGGTTCTAGTA-ATA-ATCTTC-A
** * * * * ** * * * * * *
98839 TTC-TTTTCAAGATTGGGCACCATAAACATAATATTCTCTTTAGGATACATGTTATTGATGCTTT
1 TTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
** * ** * ** ** * * * * * **
98903 GGTGTCACAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTAAAGTCTAAGTTCGTGCCGCAAAT
65 TCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATTCCTTAAAT
** * * * * ** * * ** *
98965 GGGACAAACATGGATTCT-AGTAA-TGATCTTCATTCATTTT-GTGATTAGGCA-TTATAAACGC
128 AAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGCCA-AAACAC
** * * ** * * * *
99026 ATTCTTTTCATTAGGATA-ACTGACACTGATGACTTTCCTCTC-CATGGAAAGGCTTTT-TTTGT
189 ATTCCCTTCATTAGGATACA-AGACATTGATG-CTTTGGTGTCGCA-AGAAAAGCTTTTCTTT-C
* * * * ** * * * *
99088 C-CTATTTTCCG-TCA-TATCATAGTTCATAC-CTTAAATAAGGCAAGCATCG-ATTCTAGTAAT
250 CACCATTTT-TGAT-AGAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAATACT--T-AT
* * * * * * * * *
99148 A--G-TCTCCATTCTTTTAAAGA-TTGAGAAGCCA-AAACACATTCCTT-TTAGTAT-GATACAT
308 ACGGATCCCCATTCTTTTCAAGATTTG-GCA-CCATAAACATAGT-CTTCTCA-TTTGGATAAAC
* * * *** * * * * ** * * * *
99206 GACATGGATGCTTTGGGGACGTAAGAAAAGCTTTTCTCTCCATCGTTTTTTATAGAATCAAAGTT
369 GATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTC-CCACCAATTTTTGTTGAGTCTAAG-T
* * * ** * * *
99271 TCTTTCGT-AAATGAGACAAACATGAATACTTA-TACTAAT-TCCTA
432 TCGTGCCTCAAATGAGACAAACATGGGTTC-TAGTAATAATCTTC-A
* * * * ** * * * * *
99315 TTCTTTTTAGGATTAGGCACCACAAACATAGTCTTCTCATTT-TGATACATGATATTGATGCTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTC-TTTAGGATAAATGATATTGATGATTT
** ** * * ** * * ** * ** *
99379 GGTTTCACAAG-AAATGCATTTC-TCCCACCAATTTT--TGTAAAGTTTAGGTTCACGCCTCAAA
65 TCTTTTGCATGAAAAT-CTTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATTCCTTAAA
* * ** * * ** * * * *
99440 TGAGACAAACA-CGAATTCT-AGTAATGGTCTTCAGTCATTTT-GTGGTTTGGCA-CTATAAACA
127 TAAGACAAGCATCG-ATTCTCA-TAACAGTCTCCATTC-TTTTCAAGATTGGGAAGCCA-AAACA
* * ** * ** * * * * *
99501 CATTCTCC-TCTTTAGAATA-AACGATGTTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC
188 CATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* ** ** * ** * * * * *
99564 -CCTTTTTTTCTTTATATCAAAATTCATAC-CTTAAATAAG-GAAGCATCGATTCACGTAATA--
251 ACCATTTTTGATAGA-ATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAAT-AC-TTATACG
* * * * * * ** * * * *
99624 G-TCTCTATTCTTTTCTAGATTAGG-AGGCCA-AAACACATTCCCCTCATTAGGATACATGACAT
311 GATCCCCATTCTTTTCAAGATTTGGCA--CCATAAACATAGTCTTCTCATTTGGATAAACGATAT
* * * * * * * * **
99686 TGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTAATAGAATCAAAGTTTAT-
374 TGAAGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTT-GTTGAGTCTAAGTTCGTG
* * ** * * * **
99749 CTCTTAAAT-ATGACAAACGTGAATACTCA-TACTGATCCCCA
437 C-CTCAAATGA-GACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * ** * * * * * * **
99790 TT-ATTTTTAAGATTTGGCACCATAAACATAGTT-TTCTCCTAAGGATACATCATATTGAAGCCT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCA-TTCTCCTCTTTAGGATAAATGATATTGATGATT
** * ** **** * * * * ** * *
99853 TGGTTTTGCAAGAAAGGCTTTTC-CCAACCAATTTT--TGTAAAGTCTATGTTTGTGCCTCAAAT
64 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATTCCTTAAAT
* * * * * ** * * * *
99915 GAGACAAACATGGATTCT-AGTAA-TGCTCTTCATTCATTTT-GTGATTAGGCA-CTATAAACTC
128 AAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGCCA-AAACAC
*** * ** * ** * * * *
99976 ATTCTCCTATC-TT-GGATA-AATGATGCTGATGATTTTCTTTTACATGGAAATCTTTTCTTTTC
189 ATTC-CCT-TCATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCC
* ** ** * * ** * *
100038 -CCTTTTTTCCTTTA-AATCAAAG-TTCACACCTTAAATAAGACAAGCATCAATTCTCGTA-ACA
251 ACCATTTTT--GATAGAATCAAAGTTTGTC-TCTTAAATAAGACAAACAAGAATACT--TATACG
** * ** * * * * * * * * * *
100099 G-TTTCCAGTCGGTTCTAGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATACATGACAT
311 GATCCCCATTCTTTTCAAGATTTGGCA-CCATAAACATAGTCTTC-TCATTTGGATAAACGATAT
* * * * * * * * * *
100161 TGATGCTTTGGTGTCGCAAGAAAAGCTTCTCTTT-CCAAC-GTTTTTAATAGAATCAAAGCTT-A
374 TGAAGCTTTGGTTTCGCAAGAAAGGCTT-T-TTTCCCACCAATTTTT-GTTGAGTCTAAG-TTCG
* * ** * * * **
100223 T-CTCTTAAA-AACGACAAACATGAATACTCA-TACTGATCCCCA
435 TGC-CTCAAATGA-GACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * * *
100265 TTC-TTTTCATGATTGGGCACCATAAACATAGCATTCT-C-C-TTAGGATACATGATATTGATGC
1 TTCATTTT-GGGATTAGGAACTACAAAC---GCATTCTCCTCTTTAGGATAAATGATATTGATGA
** * * * * *** ** *** *
100326 TTTGGTTTCGCAAG-AAATGCATTTCTTAGTTTTTAGGATTAGGCACCACAAA-CATAGTCTTCT
62 TTTTCTTTTGCATGAAAAT-CTTTTCTTTG-CCCT---ATT-TTC-CTTTAAATCAAAG--TTC-
* * * * * *
100389 GATT--TT-GATAA-ACATAGCCTTAGTTTCGCA-AGAAAGGCTTTCTCCCCACTGAT-TTTTCT
117 -ATTCCTTAAATAAGACA-AG-CATCGATTCTCATA-ACA-G---TCT--CCA-T--TCTTTTC-
** * * * ** * ** * *
100448 AAAGACTATGTTCATGCCTCGAATGAGACA-AACATGGAATCTA-G-TA-ATG--ATCTGCATCC
168 -AAGA-T-TG-GGAAG-C-C-AA-AACACATTCCCT-TCAT-TAGGATACAAGACAT-TG-ATGC
* * * *** * ** * * * *
100507 ATTTTGTGATTAGGCATGATAAA-CACAT-TTTCC-TC-TTTAGGATA-AATGATACTAATGAT-
221 -TTTGGTG--T-CGCAAGA-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGT-TTG-TC
**** * * * ** * * **
100566 T-TT---TTTTTC---CATGGAATTCTT-TTC-TTTGCCCTATTTTCCTTTATATCAA-AGTTCA
279 TCTTAAATAAGACAAACA-AGAATACTTATACGGAT-CCCCA--TT-C-TT-T-TCAAGATTTGG
* * * * ** * * * * * * *
100621 TACCTTAAATA-AGACAAGCATCAATTCT-TAT-AAC-AGT-CT---CCATTCGTTT--CTAGAT
336 CACCATAAACATAGTC-TTC-TC-ATT-TGGATAAACGA-TATTGAAGCTTTGGTTTCGCAAGAA
* **** * * *** * * ** * * *
100676 TGG---GAAGCCAAAACACA-TTCCCTTCA-T-TAAGATACAAG--AC-ATTGATG-C---CTTG
396 AGGCTTTTTTCC-CACCA-ATTTTTGTTGAGTCTAAG-TTCGTGCCTCAAATGA-GACAAACATG
* *
100728 GTGTTGCAAG-AA-AAGCTTTTC-
457 G-GTT-CTAGTAATAA--TCTTCA
* * * * *
100749 TTCCCACCGTTTT-TGA-TA-GAA-T-CAAA--CTTTAT-CTCTTAAATACGACAAACATGAATA
1 TT--CA---TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTT---TAGGA-TAA-ATG-ATA
* *** * *** * * *
100806 CTCAT-ACTGATCCCCATTCTTTT-CAAGATTGGGCACCATAAACATAG---TATTCTCCTTAGG
55 -T--TGA-TGAT----TTTCTTTTGC---A-TGAAAATC-TTTTCTTTGCCCTATTTTCCTT---
* * * * * *** ** *** * * ** * ** *
100866 ATAAATGATA-TTGATGCTTTGGTTTCGCACGAAAGGC-TTTTTTCCCACCAACTTTTGTGAAGT
104 -TAAATCAAAGTTCATTCCTTAAATAAG-AC--AA-GCATCGATTCTCA-TAAC-AGTCTCCATT
* ** * ** * *** * * *
100929 CTAAGTTCATACCTT--AAATGGGACAA-AC-TTGGATTC--TA--ATA-ATGATC-TTCATTCA
162 CT--TTTCA-AGATTGGGAA-GCCAAAACACATTCCCTTCATTAGGATACAAGA-CATTGATGC-
* * ** ** * ** * *
100984 TTTTGTGATTAGGCATTATAAA-CACTT-TTTCCTCC--TTAGGATA-AATGATA-TTGATGATT
221 TTTGGTG--T-CGCAAGA-AAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT--TG--T
* * ** * * * **** * ***
101043 TTCTT---T-TG-C-ATGAA-AAT-CTTTTTTTC-GCTCTATTTTTCTTTAAATCAA-AGTTCAT
278 CTCTTAAATAAGACAAACAAGAATAC--TTATACGGATC-CCCATTCTTT---TCAAGATTTGGC
* * * ** * ** * * * ***
101098 ACCTTAAATA-AGACAAGCATCGATTCTCGTGACAGTCTCTATTCTTTTGAA-CATTGG-GAAGC
337 ACCATAAACATAGTC-TTC-TC-ATT-T-G-GATA--AACGA---TATTGAAGCTTTGGTTTCG-
* ** * * * *
101160 CAAAACACATTCCCTTTATTAGGATACAAGACATTGATGCTTTGGGGTCGTAAGAAAAGCTTTTC
390 CAAGA-A-A--GGCTTT-TT----TCCCA-CCA---AT--TTT----T-GT-TG---AG----TC
* * * * *** * *
101225 TTTCCATCGTTTTTGTTAGAATCAAAGTTTCTCTCTTAAATAAGACAAACCTTAATACTCA-TAC
427 --T--A-AG--TTCG-T-G---C---------CTC--AAATGAGACAAACATGGGTTCT-AGTAA
*
101289 TAATC-CCGA
468 TAATCTTC-A
* ** * * * * ** * ** * * * *
101298 CTC-TTTTCATGATTTGGCACCATAAACATAGTCTTATCATTAGGATACACGATATTGATGCTTT
1 TTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
** ** * ** ** * * * * * *
101362 GGTTTCACAAGAAAGGC-TTTCTTCCCACCAATTATT--GTAAAATCTAAGTTCATGCCTCAAAT
65 TCTTTTGCATGAAAATCTTTTCTTTGC-CCTATT-TTCCTTTAAATCAAAGTTCATTCCTTAAAT
* * * ** ** * * * *
101424 GAGACAAACATGGATTCT-AGTAAC-GATCTTGATTCATTTT-GTGATTAGGCA-CTATAAACGC
128 AAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGCCA-AAACAC
** * * * * * ** * * ** * ** *
101485 ATTTTGC-TCTTTAGGATA-ACTGATACTGATGTTTTTCTTTTGCTTGGAAATATTTTTTTTGCC
189 A-TTCCCTTCATTAGGATACA-AGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CC
* * * * ** * * * * * *
101548 -CTATTTTCCT-TTA-TATCAAAGCTCATAC-CTTAAATAAGCCAAGCATCGATTCCCATAATA-
251 ACCATTTT--TGATAGAATCAAAGTTTGT-CTCTTAAATAAGACAAACA-AGAAT-AC-TTATAC
* * * * * * ** * * *
101608 -G-TCTCCATTCATTTCAAGA-TTGGTTAGCCA-AAACACATTC-CCTTCATTAAGATACATGAC
310 GGATCCCCATTCTTTTCAAGATTTGG-CA-CCATAAACATAGTCTTC-TCATTTGGATAAACGAT
* ** ** * * ** * * * *
101668 ATTGATGCTTTGGGGTCATAAGAAAAGCTTTTGTTTCCGTC-GTTTTTGATGGAATCAAAGTTTC
372 ATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTG-TTGAGTCTAAG-TTC
* * * *
101732 -T-CTCTTAAATAAGACAAACGTGGGTTCTAGTAATGATCTTC-
434 GTGC-CTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
* * * * * *
101773 TTGCACTTTGAGATTTGGAACTACAAGCGCATTCTCCT-TATTAGAATAAATGATATTAATGA-T
1 TT-CATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATT
* * * *
101836 TT-TTTTGCATGGAAATCTTTTCTTTGCCCTCTTTTCCTTTAAATCAAAGTTAAAT-CTATAAAT
64 TTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCT-TAAAT
* *
101899 AAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAGATTGGGAAACCAAAACACATTC
128 AAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
* * * * *
101964 CCTCCATTAGAATACAAGACATTAATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* ** * * * ** * * * *
102029 TTGATTGAATCAAAGTACGTTTCTTAAATACGAAAAACTTGAATGCTCATGCTGATCCCCAGCCC
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGAT------CCC
* * * * * * *
102094 CATTCTTTTCAAGATTGGGCGCCATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTT
317 CATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTT
* * * * * ** * *
102159 TGATTTTGCAAGAAATGCGTTTTTCCCACCAATTTTTATAAAGTCTAACTTCGTACCTCAAATGA
382 TGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGA
* * *
102224 GACAAACATGGGTTCTAGGAATGATCTTTA
447 GACAAACATGGGTTCTAGTAATAATCTTCA
* * * *
102254 TTCATTTTGGGATTAGGAGCTACAAACGCATGCTCCT-TATTCGGTTAAATGATATTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATTT
* * * *
102318 TCTTTTACGTGAAAATCTTTTCTTTGCCCTACTTTCCTTCAAATCAAAGTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** *
102383 GATGAGCATCGATTCTCATAACAGTTTCCATTCTTTTCAAGA-TGAGGAAGCCAAAACACATTCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTG-GGAAGCCAAAACACATTCC
* * **
102447 CTTCATTAGGATGCAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGCTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * * * * *
102512 TGATCA-AACCAAAGTTTATCTTTTAAATAAGACAAACATGAATACGTGTACGGATCCTCATTCT
259 TGAT-AGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * * *
102576 TTTCAAGATTGGGCACCATAAACATAGTTTTCTCATTTGGATACACGATATTGAAAC-TTGAGTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTG-GTT
* * * * *
102640 TCACAAGAAAGGCTTTTTTCCCACCAATTTTTTTTGAGTCTAGGTTCTTGCCTCAAGTGAGACAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
102705 ACATGGGTTCTAGTAATAATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* ** * * * *
102730 CTCATTTTGCTATTAGGAACTGCAAACGTATTCTCCTCATTAAGATAAATGATATTGATGA----
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
** ** ** * ** ** ** * ** **
102791 -TTGGGCACCATAAA-CATAGTC-TT-CGC-ATTTTGATAGACGATATTGAAG--CTTTGGTTTC
66 CTTTTGCATGA-AAATC-TTTTCTTTGCCCTATTTTCCTTTA--A-ATCAAAGTTCATTCCTTAA
** * * * ** * * * *** ** * * *** *
102849 GCAACA-AAGGC-T--TTTTTCCCACCAATTTTTGTTGAGTAT-AAG-TTCGTGCCTCAAATGAG
126 ATAAGACAA-GCATCGATTCTCATAACAGTCTCCATT-CTTTTCAAGATT-GGGAAGCCAA--A-
*** * * * * * *
102908 ACAAACA-TGGGTTC--TA-G-TA-ATGATC-TTCGTTCGTTTTGTGATTAGGT-ACTATAAACA
185 AC--ACATTCCCTTCATTAGGATACAAGA-CATT-GAT-GCTTTG-G--T--GTCGCAAGAAA-A
* * * * * * * * * **
102965 -C-ATTC--TCC-TC-TTTTGGATA-AATGATA-CTGGATATTCTT---T-TG-C--A-TGGAA-
239 GCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTG-T-CTCTTAAATAAGACAAACAAGAAT
* ** * * ** *
103013 ACCTT-TTC-TTTGCCCTATTTTACCTTAAATCAA-AGTTCATTCCTTA-CATAAGACA-AG-CA
302 A-CTTATACGGAT-CCCCA--TT--CTT--TTCAAGA-TT--TGGC--ACCATAA-ACATAGTCT
* * * * * * * * * *
103072 TC-GATTCTCG-T-AAC-AGT-CTCAATTCTTTTCAAGATT-GGAAGCCAAAACGC---ATTCCC
353 TCTCATT-TGGATAAACGA-TATTGAA-GC-TTT--GGTTTCGCAAG---AAAGGCTTTTTTCCC
** * **** * * * **
103128 TTC-A--TTAG--GA-TAC-AAGACATT-GATG-CTTTGGTGTTG-CAAGAAAAGTTTTTCT--T
409 ACCAATTTTTGTTGAGT-CTAAG---TTCG-TGCCTCAAATG-AGACAA-ACATG-GGTTCTAGT
*
103181 -TTAA-C--CA
466 AATAATCTTCA
* * *
103188 -T--TTTT--GA-TA-GAA-T-CAAA-G-TTTGT-CTCTTAAATAAGAGA-AACATGA-A-T-AC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTT---T-AG-GATAA-ATGATATTGAT
* * * ** * * ** * *
103237 G-TGTAC----GGATGCCCATTCTTTTCAAGATTGGGC-A---T-C-ATAAA-CATAGTT--TTC
60 GATTTTCTTTTGCATG-AAAATCTTTTC---TTTGCCCTATTTTCCTTTAAATCAAAGTTCATTC
** * * * * * * *
103288 TCATTTGGATAA-ACGATATTGAAGTTTTGGCTTCGCA-AGAAAGGCT---TT-TTTCCCAGCAG
121 -C--TTAAATAAGAC-A-A--GCA----TCGATTCTCATA-ACAGTCTCCATTCTTT-TCA--AG
* * * * *** * * * *
103347 TTTTTGTTG-AGTCTAAGTTCA-TCCC-TCA-AATGAGACAA-AC----ATG----GGT-T--CT
171 --ATTG-GGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCA
* * * *
103396 AGTAATAA--TCTTCTTT----CATTTTGTGATTAGGAACTCAAATGCATTCTCCTCATTAGGAT
233 AG-AA-AAGCTTTTCTTTCCACCATTTT-TGA-TA-GAA-TCAAA-G-TTTGT-CTC-TTA-AAT
* *** * * * * ** *** ** *** * **
103455 AAATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTTGCCCTATTT-TC-CTTTAAAT
287 -AA-GACAAACAAGA-ATACTTAT--ACGGATCCCCATTCTTTT-CAAGATTTGGCACCATAAA-
* * ** * *** * * * * * **** **
103518 TAAAG---T-TCATTT-CTTAAA-TA-AGACAAGC-ATGGATTCTCATA-ATAGTCCCAATTCTT
345 CATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGCA-AGAAAGGCTTTTTTCCC
** ** * * * ***** * * * * * * *
103574 TTC-ATGATTG-GGAAGCCAAAACAAAAT-CCTTGATTAGGATACAAGACATTGATGCTTTTGTG
409 ACCAATTTTTGTTG-AGTC-TAAGTTCGTGCC-TCA-AATGAGACAA-ACA-TG--GGTTCT-AG
* *
103636 CTGCAAGAAAAGCTTTTCA
465 -T---A-ATAA--TCTTCA
* * * ***
103655 TTTCACCGTTTT-TGA-TA-GAA-T-CAAA---ATT-TGCCTC-TTA-AAT-AA-GACAAACATG
1 -TTCA---TTTTGGGATTAGGAACTACAAACGCATTCT-CCTCTTTAGGATAAATGATATTGATG
* * * * * * ** * * *** ** ** *
103707 A-ATACATGTAC-GGATCCA-C-ATTCTTTTCAAGATTGGGCACCATAAA-CATAGTCTTCTAAT
61 ATTTTCTTTTGCATGA-AAATCTTTTCTTTGCCCTATT-TTC-CTTTAAATCAAAG--TTC--A-
*** * *** * * * * * * * *
103767 TTGGATAAACGATATTGAAGCTTTGGTTTTGCAAGAAAAG-CT---TT-TTTCCCACATGTTTTT
118 TTCCTTAAA-TA-AGACAAGCATCGATTCT-C-ATAACAGTCTCCATTCTTT-TCA-A-G--ATT
** * * * * * * * * * *
103827 TTG-AGTC-TAACTTCA-TGCC-TCA-AATGAGACAA-ACA-TG--GGTTCT--AGT--C---AT
174 GGGAAGCCAAAAC-ACATTCCCTTCATTAGGATACAAGACATTGATGCTT-TGGTGTCGCAAGAA
* * * * * * * *
103876 AA--TCTTCATT-CA--TTTTTGTGATTAGGCACTACAAACATATTCTATTCTTTAGGATAAATG
237 AAGCTTTTCTTTCCACCATTTT-TGA-TA-G-AAT-CAAA-GT-TTGT-CTC-TTA-AAT-AA-G
* *** * * * * * * *** ** * *** * *** *
103936 ATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTT-TC-TTTTAAATCAAAG-
290 ACAAACAAGA-ATACTTAT--ACGGATCCCCATTCTTTTCAAGATTTGGCACCATAAA-CATAGT
* ** * * * * * * *
103998 -TTCAT-ACCTTAAAT-AA-G--A-CG-AGCATCGATTCTCGCAA-CAA------TCT-CCATTC
351 CTTC-TCA-TTTGGATAAACGATATTGAAGCTTTGGTT-TCGCAAGAAAGGCTTTTTTCCCA-CC
** * *** * * * * *
104047 --TTTTCTGATTGGGAAACCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGT
412 AATTTT-TG-TT--G-AGTCTAAGTTC-GTGCC-TCA-AATGAGACAA-AC----ATG----GGT
* * *
104110 GTCGCAAG-AA-AAGCTTTTCT
460 -T--CTAGTAATAA--TCTTCA
* * * * * * * *** *
104130 TTCCACCATTTT-TGA-TA-GAA-T-CAAA-G-TTTGT-TTC-TCA--A-ATATGACAAACAAGA
1 TT----CATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGA
* * * * *** ** * * * ** ** *
104183 -ATACTTATACA-G-ACCCCCATTCTTT--TCAAGTTTGGGCACCATAAA-CGTAG-TCTTCTCA
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTA-TTT--TC-CTTTAAATCAAAGTTCAT-TC-
** * * * * * * *** **** **
104241 CTTGGATACACGATATTGAAGCTTTGGTTTTGCA-AGAAAGGT-TTTTTTCCCACCAATTTTTGT
121 CTTAAATA-A-G--A--CAAGCATCGATTCT-CATA-ACA-GTCTCCATTCTTTTCAA-GATTG-
* * * *** * * * * * * **
104304 TG-AGTCTAAGTTC-GTGCC-TCAAATA--AGACAA-ACATTG--G-TTT--TAGT-AC-TGATC
175 GGAAGCCAAAACACATTCCCTTC-ATTAGGATACAAGACATTGATGCTTTGGT-GTCGCAAGAAA
** * * * * * * * * *** ** *
104356 TTCATATATTCTCC-TC-TTTATGATA-AATGATA--TTGATAAT-TTTCTTTTG-C-ATCAA-A
238 AGCTTTTCTT-TCCACCATTTTTGATAGAATCAAAGTTTG-T-CTCTTAAATAAGACAAACAAGA
* ** * ** *
104412 AT-CTTTTA--TTTGCCCTATTTTCCTTTAAATCAA-AGTTCATATCTTA-AATAAGACA-AGCA
300 ATACTTATACGGAT-CCCCA--TT-CTTT---TCAAGA-TT--TGGC--ACCATAA-ACATAG--
**** ** * * * * * *** * **
104471 TCGATTCTCATAACAAT-CTCCATTCTTTTCAAGATTGGGAAGC-CAAAACACATTCTCTTCATT
350 TC--TTCTCATTTGGATAAACGA---TATTGAAGCTTTGGTTTCGCAAGA-A-AGGCT-TT--TT
* * * * ** * * * *
104534 AGGATACAAGACATTGATGCTTTGTTGTCGCAAG-AAAAGCTTTTCTTTCCACCATTTTTTATG-
405 ----TCCCA-CCA---A---TTT-TTGTTG--AGTCTAAG---TTCGTGCC-TCA-----AATGA
* *** * * *
104597 GAATCAAAGTTTATCTCTTAAATAAGAAACAAGAATACTTATCCGGA
447 G-A-CAAA---CATGGGTT--CT-AG---TAATAAT-C-T-T-C--A
* ** * * * * * ** * ** ** * * *
104644 TCCCCATTCTTTTCATGATTGGGCACCATAGACATAGTCTTGTC-ACATGGGTACACGATATTGA
1 T--TCA---TTTT-GGGATTAGGAACTACAAACGCATTCTCCTCTTTA-GGATAAATGATATTGA
* * ** * * ** * * * * *
104708 AGCTTTGGTTTTGCAAG-AAATGCATTT-TTCCCACCAATTTT-C-GTAAAGTCTAAGTTCGTAC
59 TGATTTTCTTTTGCATGAAAAT-CTTTTCTTTGC-CCTATTTTCCTTTAAA-TCAAAGTTCATTC
* * * * * * * ** * *
104769 CTCAAATGAGACAAACATGGGTTCT-AGTAA-TGATCTTCATTCATTTT-GGGATTAGGAA-CTA
121 CTTAAATAAGACAAGCATCGATTCTCA-TAACAG-TCTCCATTC-TTTTCAAGATTGGGAAGCCA
* * * * * * ** * * * * * *
104830 CAAACGCATTCTCC-TCGTTAAGATA-AATGATAATGATGATTTTCTTTTGCATGGAAATCATTT
183 -AAACACATTC-CCTTCATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTT
* * * * * * *
104893 CTTTGCC-CTATTTTCCT-TTA-ATTCAAAGTTCAT-TC-CTTAAATAAGATAAGCATCG-ATTC
245 CTTT-CCACCATTTT--TGATAGAATCAAAGTT--TGTCTCTTAAATAAGACAAACA-AGAATAC
* ** * * * * * * *
104952 TCATA-ATAGTCTCCATTCTTTTCATA-ATTGGGAAGCCAATACACAT--TC-CCATCGTTAGGA
304 TTATACGGA-TCCCCATTCTTTTCA-AGATTTGGCA-CC-ATAAACATAGTCTTC-TCATTTGGA
* ** * * * * ** * *
105012 TACAA-GAAATTG-ATTTGTTGGTGTCGCAAGAAAAGATTTTCTTTCCA-CTGTTTTTGATAGAA
364 TA-AACGATATTGAAGCT-TTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTG-TTGAG
* * * * * * ** * *** **
105074 TCAAAGTTTGTTTCTTAAAAT-AGAAAAACATGAATAC-ATGTACGGATCCCCA
425 TCTAAGTTCG-TGCCTCAAATGAGACAAACATGGGTTCTA-GTAATAATCTTCA
** * * * ** * * * * *
105126 TTC-TTTTCTAGATTAGGCACCATAAACATAGTCTTCTCGTTT-GGATACACGATATTGAAGAGC
1 TTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTC-TTTAGGATAAATGATATTGATGA--
* * ** * *
105189 CTAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCAC
62 -T--T-TTCT--TTT-G---CATGA-A---AATCTTTTCTTT-GC-------CCTATTTT----C
* * * * * * * ** * * *
105254 CAATTTTTGTCGAGTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGGTTCT-AGTAAC-GAC-C
101 C-----TT-T-AAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCA-TAACAGTCTC
** * * * *
105316 ATCATTCATTTT-GTGATT-AGACA-CTATAAACACATTCTCC-GCATTAGGATA-AATGATATT
158 --CATTC-TTTTCAAGATTGGGA-AGCCA-AAACACATTC-CCTTCATTAGGATACAA-GACATT
* ** * * * * * * ** **
105376 GATGATTTCCTTTTGCATGGAAATC-TTTCTTTGC-CTTTTTTTCCTTTA-AATCAAAGTTCAT-
216 GATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT--GATAGAATCAAAGTT--TG
* * * * * * *
105437 TC-CTTAAATAAGACAAGCATTG-ATTCTCGTAATA--G-TCTCAATTCTTTTCAAGATTGGGAA
277 TCTCTTAAATAAGACAAACA-AGAATACT--T-ATACGGATCCCCATTCTTTTCAAGATTTGGCA
* * * * * * *
105497 GCCA-AAACACATTCCCTT-T-ATTAGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAG
338 -CCATAAACATAGT--CTTCTCATTTGGATA-AACGATATTGAAGCTTTGGTTTCGCAAGAAAGG
* * ** * ** * * * **
105558 CTTTTTTTTCTACTGA-TTTTGATAGAAAC-AATGTTTGT-CTCTTAAATAAGACAAACATGAAT
399 C-TTTTTTCCCACCAATTTTTG-TTGAGTCTAA-GTTCGTGC-CTCAAATGAGACAAACATGGGT
* *** *
105620 ACGTA-TACGGATCCTCA
460 TC-TAGTAATAATCTTCA
** * * * * * ** * ** * * * *
105637 TTC-TTTTCAAGATTGGGCACCATATACTTAGTCTTTTCATTT-GGATACATGGTATTGAAGCTT
1 TTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTC-TTTAGGATAAATGATATTGATGATT
** * * * *** ** * * * * * ** *
105700 TAGTTTCGAAAGAAAGGATTTT-TTCCCACCAATTTT--TGTTGAGTCTATGTTTGTTCCTCAAA
64 TTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TTAAATCAAAGTTCATTCCTTAAA
* * * * * ** * * ** *** * *
105762 TACGACAAACTTGGGTTCTTGTAA-TGATCTTCAAACTTTTTGTGATTAGGCA-CCATAAACACA
127 TAAGACAAGCATCGATTCTCATAACAG-TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACA
* * *
105825 TTCTCTAT-TTTAGGATAAATGATACTGATGATCTTGAAACATTTGGATACATGATATTGAAGCT
190 TTCCCT-TCATTA-G------GATAC--A--A----G--ACA-TT-G----ATGCT-TTG--G--
* * * * * * * * *
105889 TTGGTTTCACAAGAAAGGCTTTT-TTCCCCCCAATTTTTG-TCGAGTCTAAGTTCGTGC-CTCAA
226 -T-G--TCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAGAATCAAAGTTTGT-CTCTTAA
* * ** * * ** ** * ** * * * *
105951 ATGAGACAAACATGGGTTC-AAGTAATGATCTTCATTCACTTT-GTGATTAGACACTATAAACAC
285 ATAAGACAAACAAGAATACTTA-TACGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACAT
* * * * * * ** * * * *
106014 ATTCTCCTC-TTTAGGATAAATGATACTGATGGTTTTCTTTTGCAGGAAA--ATTTTTTCATTGC
348 AGTCTTCTCATTT-GGATAAACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTC---CC
* * * ** * * * * * *** * * * *
106076 -CCTATTTTCT-TTAAATGAAAGTTCATACCTTAAATAAGACAAGCATCTATTCTCGTGACAGTC
409 ACCAATTTT-TGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATAATC
*
106139 TCCA
473 TTCA
** * * * * * * *
106143 TTC-TTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACAA-GACATTGATGCT
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCCTCTTTAGGATA-AATGATATTGATGAT
** * * * * *
106205 TTGGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAGAATCAAAGTT--TGT-CTC
63 TTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCT-TTA-AATCAAAGTTCAT-TCCT-
* * * * * *
106264 TAAATAAGACAAACAT-GAATACGT-AT-ACGGATC-CCTATTCTTCTCAAGAGTGGGCA-CCAT
123 TAAATAAGACAAGCATCG-ATTC-TCATAACAG-TCTCC-ATTCTTTTCAAGATTGGGAAGCCA-
* * * * * * * * * * * *
106324 AAACATAGT-CTTCTCATTTGGATACACGATATTGAAGCTTTGATTTCGTAAGAAAAACATTT-T
183 AAACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCT
* * * * * ** * ** *
106387 TCCCACCAATTTTTG-TA-AAGCCTAAGTTCGTACT-TCAAATGGGACAAACATGGGTTC-TAGT
247 TTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTTA-T
** ** * ** * * * ** * * *
106448 AATGATCTTC-TTGCACTTT-GGGATTTGGAACTACAAACGCATTCTCCTC-TTTAGGATAAATG
308 ACGGATCCCCATT-C-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT-GGATAAACG
* * * * * * * * ** * * ** *
106510 ACATTGATGATTT-TTTTTGCATGGAAA-TCTTTTCTTTCC-CCTCTTTTCCT-TTAAATGAAAT
370 ATATTGAAGCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTAAG
* * * * * * * * *
106571 TTCATTCCTTAAAT-ATGACAAGCATCGATTCTCA-TAACAGTCTCCA
431 TTCGTGCCTCAAATGA-GACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * *
106617 TTC-TTTTCAAGATTAGGAAGC--CGAAACAC-TTTTCGTTCTTTTGGATACAA-GAAATTGATG
1 TTCATTTT-GGGATTAGGAA-CTAC-AAACGCATTCTC-CTCTTTAGGATA-AATGATATTGATG
* ** * * * * * *
106677 CTTTGGTATTGCAAG-AAATGC-TTTCTTTTCTACCGT-TTTT--TATACAATTAATGTT--TGT
61 ATTTTCTTTTGCATGAAAAT-CTTTTCTTTGC--CC-TATTTTCCTTTA-AATCAAAGTTCAT-T
* * * * * * * * *
106735 CTCTTAAATATGACAAACCT-GAATACTCAT-ACTAATCCCCATTCTTTTCAGGATTTGG-TGCC
120 C-CTTAAATAAGACAAGCATCG-ATTCTCATAAC-AGTCTCCATTCTTTTCAAGATTGGGAAGCC
* * * * * * * * *
106797 ATAAAC-CTAGT-CTTCTCATTAGGATACATGATATTAATGCTTTGGTTTCGCAAGAAATGCATG
182 A-AAACAC-ATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * ** *
106860 T-TTTCCACCAATTTTT-ATA-AAGTCTAAGTTCGTAC-CTCAAATGAGACAAACATGGGTTC-T
244 TCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTT
** ** ** * * * * ** * * * * *
106920 AGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCATTCTCCTCACTAGGATAAAT
306 A-TACGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAAC
* * ** * * ** ** * * * *
106984 GATATTGATGATTTTCTTTTGCATGGAAA-TATTTTCTTTGC-CCTATTTTCCT-TTAAATCAAA
369 GATATTGAAGCTTTGGTTTCGCA-AGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTAA
* * * * * * * * * ** *
107046 GTTCATTCCTTAAATAAGACAAGCATCGATTCTTGTAACAGCCTCCA
430 GTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
** * * * * * * *
107093 TTC-TTTTCAAGATTAGAAAGCTA-AAACACATTC-CCTTCGTTAGGATACATGACATTGACGCT
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCC-TCTTTAGGATAAATGATATTGATGAT
**** * * ** * * * * * *
107155 TTGGGGTCGTAAAAAAAGCTTTTCTTT-CCATCGTTTT--TGATAGAACCAAAGTGT--TTCTTT
63 TTTCTTTTGCATGAAAATCTTTTCTTTGCCCT-ATTTTCCT-TTA-AATCAAAGT-TCATTC-CT
* * * * * * * * * *
107215 TAAATGAGACAAACGT-GAATACTCAT-ACTAAT-TCCGATTCTTTTTAGGAGTAGGCA-CCACA
123 TAAATAAGACAAGCATCG-ATTCTCATAAC-AGTCTCC-ATTCTTTTCAAGATTGGGAAGCCA-A
* * * * * * * * * *
107276 AATATAGT-CTTCTCATTTGGATACATGATATTGATGCTTTGGTTTCACAAGAAATGCATTTTC-
184 AACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCT
** * * * * * *
107339 --CCACCAATTTTTG-TA-AAGTTTAGGTTCATG-C-CTCAAGTGAGACAAACATGGAT--TATA
247 TTCCACC-ATTTTTGATAGAA-TCAAAGTT--TGTCTCTTAAATAAGACAAACAAGAATACT-TA
** ** * ** * * * * *
107396 GTAATGATCTTCAGTCATTTT-GTGATTAGACACTATAAACACATTC-TCTTC-TTTAGGATAAA
307 -TACGGATCCCCATTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTC-TCATTT-GGATAAA
* ** * ** * * ** ** * * * *
107458 TGACGTT-AATGATTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCT-TTAAATCAA
368 CGATATTGAA-GCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTT--TGTTGAGTCTA
** * * * *** * * * *
107520 AGTTAATACCTTAAATAAGACAGGTATCGATTCTCGTAATATTATTGTCTCCA
429 AGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATA--A---TCTTCA
* * * * * * * *
107573 TTC-TTTTCAGGATTTGGGAAGCCA-AAAGGCATTC-CCTTTCTTAGGATACATGACATTGATGC
1 TTCATTTT-GGGA-TTAGGAA-CTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGA
** * * * * ** * * *
107635 TTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGT-TTTTGATGT-AATCGAACTT--TGTCTCT
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTTAAATCAAAGTTCAT-TC-CT
* * * * *
107696 TAAATATGAAAAACA-CGAATACTTAGGATACATAAACATAGTCTTCTCCTTAGGATACATCATA
123 TAAATAAGACAAGCATCG---A-TT---CT-CAT-AAC--AG---TCTCC-----AT---TC-TT
* * * *** ** ** * *
107760 TTGAAGCCTTGGTTTCGTAAG--AAAGGCTTTTTTCCCACCAGTTTTTG-TA-AAGTC--T-AAG
165 TTCAAG-ATTGG----G-AAGCCAAA-AC-ACATTCCCTTCA--TTAGGATACAAGACATTGATG
** ** * * * * * ** *
107818 CACAT-GCCTC-AAATGAGACAAACATGGATTCTAGT-AATGATTTTT-AT----TC--ATTTTG
220 C-TTTGGTGTCGCAA-GA-A-AAGC-T--TTTCT-TTCCACCATTTTTGATAGAATCAAAGTTTG
* *** * * *** * * ** ** * * * * *
107873 TGATC--AGGCACGATAAACACATTCTCCTCTTTA-GGAT--AAATGATATTGATGATTT-TCTT
277 T-CTCTTAAATAAGACAAACA-AGAATACT-TATACGGATCCCCATTCTTTTCAAGATTTGGC-A
** * *** * * * *** **
107932 CTGCATGGAAACACTTTTTTTGCTCTATTTTCCTTTAAATC-AAAGTTCATA-CCTTAAATAAGA
338 C--CAT--AAACA-TAGTCTT-CTC-A-TTT-GGATAAA-CGATA-TTGA-AGCTTTGGTTTCG-
* * ** * ** * **** * ** * *** *
107995 CAAG-CA-TCGATTCTCGTAACAATCTCCACTCGTTTCT-AGATT-GGGAAGCCAA--A-AC--A
390 CAAGAAAGGCTTTTTTCCCACCAAT-TTTTGTTGAGTCTAAG-TTCGTGCCTCAAATGAGACAAA
*** * **
108051 CATTCCCTTCATTAG-GATACAT-GACA
453 CA-TGGGTTC--TAGTAATA-ATCTTCA
* * * * * * * * ** **
108077 TTGATGCTTT-GG-TGTCGCAA-GACAAGCTTCCCTT-TCCAACGTTTTTG--AAA-GA-ATCAA
1 TTCAT--TTTGGGAT-TAGGAACTACAAAC--GCATTCTCC-TC-TTTAGGATAAATGATATTGA
* ** * * **
108134 AG-TTTATCTTTTAAATACGACAAA-CATGAATACTCATACTGATCCCTATTCTTTTCACGAATA
59 TGATTT-TCTTTTGCAT--GA-AAATC-T---T-TTC-T-TTG--CCCTA---TTTTC-C-TTTA
* * * * * * * * *
108197 GGCACCAT-AAACATAGCATTCTTCTTAGCATACATGTTATTAATGCTTTGGTTTCGCA-AGAAA
106 ---A--ATCAAA-GT-TCATTC--CTTA-AATA-A-G--A-CAA-GC-ATCGATTCTCATA-ACA
* *** **** ** * * ** * * * * *
108260 GGCTTTTTTCCCACCAATTTTTGTATAATC-TAACTTCA-TGCC-TCAAATA--AGACAA-ACAT
153 GTCTCCATTCTTTTCAAGATTGGGA-AGCCAAAAC-ACATTCCCTTC-ATTAGGATACAAGACAT
* * * * * * ** * * * *
108319 GGAT--TCT--AGT----A-AAGATCTTCATTCATTT-TATGA-TTGTGCACTATAAACACA-TT
215 TGATGCTTTGGTGTCGCAAGAAAAGCTT--TTC-TTTCCACCATTTTTG-A-TAGAATCAAAGTT
* * *** ** *** * * * * *** ** *
108372 CTCCTCTTTTGGGTAAATGGTATTGATGATTTTCTT-TAGCATGAAAATCTTTTCTTTGTTC--T
275 -T-GTCTCTTAAAT-AA-GACAAACAAGA-ATACTTATA-C--GGATCCCCATTC-TT-TTCAAG
* ** * * * ** * * * *
108434 ATTT-TC-CTTTACATCAAAG--TTCAT-ACCTTAAAT-AA-G--A--CAAGCATCGATTCTC-C
330 ATTTGGCACCATA-AACATAGTCTTC-TCA-TTTGGATAAACGATATTGAAGCTTTGGTT-TCGC
* * * ** *** * * * * * * * *
108487 TA-ATAGTCTCTATTCTTTTCA--AGATTAGGACGCTGAATC-ACA-TTCCTTTCATTAGGATAC
391 AAGAAAGGCT-T-TT-TTCCCACCA-ATT--TTTGTTGAGTCTA-AGTT-CGTGCCTCA-AAT-G
* * * *
108547 ATGACATTGATGCCTTGGGGTCGTAAG-AA-AAGCTTTTC-
446 A-GACA---A--ACATGGGTTC-T-AGTAATAA--TCTTCA
*** * * * * *
108585 TCTCCATCGTTTTTCA-TA--AAAT-CAAA-G-TTTCT-TTCTTAAATGAGACAAACATGAATAC
1 T-T-CAT--TTTGGGATTAGGAACTACAAACGCATTCTCCTCTT-TA-G-GA-TAA-ATG-ATA-
* * * * ** * **
108643 TTATACTAATTCCTATTCTTTTTAGGATTAGGCACCACAAACATAGTC-TT-CTC-ATTTT--GA
55 TT-GA-TGA-T--T-TTC-TTTT-GCA-T--G-A--A-AATC-TTTTCTTTGCCCTATTTTCCTT
* * * * *** *** * ** *
108703 TACA-CGATA-TTGA-TGCTTTGGTTTCACAAGAAAT-GCATT-TC-TCCCA--C-CAATT-TTT
104 TAAATC-AAAGTTCATTCCTTAAATAAGACAAG-CATCG-ATTCTCATAACAGTCTCCATTCTTT
* * * * * ** * ** * *
108758 GTAAAGTTTAGGTTTATGCCTCAAATGAGACA-AACATGGATT---CTAGCAATGATC-TTCA-G
166 -TCAAGATT-GG--GAAG-C-CAAA--ACACATTCCCTTCATTAGGATA-CAA-GA-CATTGATG
* * * * * ** * *
108817 TCATTTTGTGATTTGGCACTATAAACA-C-ATTC--TCC-TC-TTTAGGATA-AAT-GATGTTGA
220 -C--TTTG-G-TGTCGCA--AGAAA-AGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTT--
* * *** * ** ***
108874 TGATTTTCTT---T-TG-C-ATGGA-AAT-CTT-TTC-TTTGCCTTTTTTTTCTTTATATCAA-A
275 TG--TCTCTTAAATAAGACAAACAAGAATACTTATACGGAT-CC---CCATTC-TT-T-TCAAGA
* *** * * * ** * * ** * *
108928 ATTCATACCTTAAAGA-AGACAAGCATCGATTCTCG-TAATA-G-TCTCT-ATTCTTTTCCAGAT
331 TTTGGCACCATAAACATAGTC-TTC-TC-ATT-TGGATAA-ACGATAT-TGAAGC-TTT--GGTT
* * * *** ** * * * * *
108988 TAGGAAGCCAAA-AC-ACATTCCC-CTC-A-TTAGGATACATGACAT-TGATGCTTTGGTGTCGC
387 TCGCAAG--AAAGGCTTTTTTCCCAC-CAATTTTTG-T---TGA-GTCT-AAG--TTCGTGCCTC
** *** * ** * * * *
109047 AAGAAAAG-CTTTTCTTTCCACCGTTTTTGATAGAATCAATGTTTA
441 AA-ATGAGAC-AAAC-AT---GGGTTCTAG-T--AAT-AATCTTCA
* ** ** * * * * * *** *
109092 -TC-TCTT-AAATATGACAAACGTGA-ATACTCATACTGATCCCCATTATTTTCAA-GAT-TTGG
1 TTCATTTTGGGAT-T-AGGAAC-T-ACAAACGCAT--T-CTCCTCTTTAGGATAAATGATATT-G
* ** * * * ** * * **
109151 CACCATAAACATAGTCTTCT-CCT-AAGGATACATCATCTTGAAGCCTTGGTTTCGC---AAGA-
58 ----AT---GATTTTCTTTTGCATGAA-AAT-C-TTTTCTT--TGCCCTATTTTC-CTTTAA-AT
* * * ** *
109210 -AAGGCTT-TTTCCTAACCAATTTTTGTA-AAGTCTATGTTCG-TGCCTCAAATGAGACAAACAT
109 CAAAG-TTCATTCCTTA--AA--TAAG-ACAAG-C-A---TCGAT-TCTC--AT------AACA-
* * ** * *
109271 GGAT-TCTAGTAATGCTCTTCATTCATTTTGTGATTAGGCACTATAAACTCATTCTCCTATC-TT
153 -G-TCTCCA-T--T-CTTTTCA---AGATTGGGA--A-GC-C-A-AAACACATTC-CCT-TCATT
*** * ** * ** * * * * * **
109334 -GGATA-AATGATGCTGATGATTTTCTTTTACATGGAAATCTTTTCTTTTC-CCTTTTTTCCTTT
201 AGGATACAA-GACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT--GAT
** * ** * * ** * *
109396 A-AATCAAAGTTCATAC-CTTAAATAAGACAAGCATCAATTCTCGTA-ACAG-TTTCCAGTCGTT
263 AGAATCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACT--TATACGGATCCCCATTCTTT
* * * * * * * * * * * *
109457 TCTAGATTGGGAAGCCA-AAACAGATTC-CCTTCGTTGGGATACATGACATTGATGCTTT-GTTG
325 TCAAGATTTGGCA-CCATAAACATAGTCTTC-TCATTTGGATAAACGATATTGAAGCTTTGGTT-
* * * * * * * * *
109519 TCGCAAGAAAAGCTTCTCTTT-CCAAC-GTTTTTAATAGAATCAAAGCTT-AT-CTCTTAAAT-A
387 TCGCAAGAAAGGCTT-T-TTTCCCACCAATTTTT-GTTGAGTCTAAG-TTCGTGC-CTCAAATGA
* ** * * * **
109579 CGATAAACATGAATACTCA-TATTGATCCCCA
447 -GACAAACATGGGTTCT-AGTAATAATCTTCA
** * * * * * *
109610 TTC-TTTTCACGATTGGGCACCATAAACATAGCATTCT-C-C-TTAGGATACATGATATTGATGC
1 TTCATTTT-GGGATTAGGAACTACAAAC---GCATTCTCCTCTTTAGGATAAATGATATTGATGA
** * * ** * * * * * * *
109671 TTTGGTTTCGCAAGAAAGGC-ATT-TTTCCCACGAATTTT--TGTATAGTCTAAGTTCATACCTT
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-C-TATTTTCCTTTA-AATCAAAGTTCATTCCTT
* * * * * *
109732 AAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTAGGAAGCCAAAATAC
124 AAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACAC
* * * ** * *
109797 ATTCCCTTCATTAGGATACATGAGATTGATGCTTTGGGGTCATAAGAAAAGCTTCTCTTTCCACT
189 ATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
* * * * * * * * ** * *
109862 GTTTTTGTTAGAATCAAAGTTTCTCTCTTAAATAAGAAAAACATGAATCCTCATGCCAATTCCTA
254 ATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCA
* * * * * * *
109927 TTCGTTTT-AGGAATAGGCACCACAAACATAGTCTTCTCATTTTGATACACGATATTGATGCTTT
319 TTC-TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTT
* ** * * ** * *
109991 GGTTTCACAAGAAATACATTTCTCCCACCAATTTTTGTAAAGTTTAGGTTCGTGCCTCAAATGAG
383 GGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG
* **
110056 ACAAACATGGATTCTAGTAATGGTCTTCA
448 ACAAACATGGGTTCTAGTAATAATCTTCA
* ** * ** * * * * * *
110085 GTCATTTTTTGATTTGGTGCTATAAACACATTCTCCTTTTTAAGATAAACGATGTTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * * * *
110150 CTTTTGCAT-TAAATCTTTTCTTTGCCCTTTTTTTTCTCTATATCAAAATTCATACCTTAAATAA
66 CTTTTGCATGAAAATCTTTTCTTTGCCC-TATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * * * *
110214 GATAAGCATCGATTCACGTAATAGTCTCTATTCTTTTCTAGATTAGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * * *
110279 CTCATTAGGATGCATGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTCCTTCCACCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * ** * ** *
110344 GATAGAATCAATGTTTATCTCTTAAATATGACAAACGTGAATACTCATACTAATCCCCATTATTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * ** * *
110409 TCAAGATTCGGCACCATAAACATAGTCTTCTCCTAAGGATACATC-ATATTGAAGCCTTGGTTTC
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATA-AACGATATTGAAGCTTTGGTTTC
** * *
110473 GCAAGAAAGGC-TTTTTCCCAGCCAATTTTTGTAAAGTTTATGTTCGTGCCTCAAATGAGACAAA
389 GCAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * **
110537 CATGGATTCTGGTAATGCTCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
** * * ** * * **
110561 TTCATTTTCTGATTAGGCACTATAAACTTATTCTCCTATCTT-GGATGAATGATGCTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGATGATTT
* * * * * *
110625 TCTTTTACATGGAAATCTTTTCTTTTCCCTATTTTCCTTTAAGTCAAATTTCATACCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * *
110690 GACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAATACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * **
110755 TTCATTAGGATACATGAGATTGATGCTTTGGGGTCGTAAGAAAAGCTTTTCTTTCCACTGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * * * ** * *
110820 GGTAGAATCAAAGTTTCTCTCTTAAATAAGAAAAACATGAATGCTCATGCCAATTCCTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * * *
110885 TTAGGAATAGGCACCATAAACATAGTCTTCTCATTTTGATACACGATATTGATGCTTTGGTTTCA
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * ** * ** * * *** *
110950 CAAGAAATGCATTTCTT------AGTTTTTAGGATTAGGCACCACAAACATAGT-CTTCTTTTTT
390 CAAGAAAGGC-TTTTTTCCCACCAATTTTT--G-TT--G-A-GTCTAAGTTCGTGCCTC-AAATG
* * * ** ** ** *
111008 TGATAAACGTAGTTTTCTCCTAAGGATATATCA
446 AGACAAACAT-GGGTTCTAGTAATAATCT-TCA
* * ** * * * * ** * **
111041 -T-ATTAATGCCGTAGTTTCG--CAAGAAAGGCTTTCTCC-CTATT--GAT-TTTTATAAAGACT
1 TTCATT-TTG--GGA-TTAGGAACTACAAACGCATTCTCCTCT-TTAGGATAAATGATATTGA-T
* * ** *
111098 -ATGTTCTTGCCTCAAATAAGACAAACATG-GAATCTAGTAATGATTTGCATCC-ATTTT-GTGA
60 GATTTTCTT---T----T--G-----CATGAAAATCT--T--TTCTTTGC--CCTATTTTCCT--
* * * ** **
111159 TTAGGCACGAT-AAGCAGATT--TTCGTCTTTAGGATAAATGATACTG-AT-GATTTCTTTTTCC
103 TTA---A--ATCAA--AG-TTCATTC--C-TTA-AAT-AA-GACA-AGCATCGA-TTCTCATAAC
** * *** ******* * * * * * * *
111219 ATGGAAT-TCTTTTCTTTGCCCTATT-TTCCTTTATATCAAAGTT-CATACCTTA--A-ATAAGA
152 A--G--TCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACA-TTCCCTTCATTAGGATACAAGA
* *** ** * * * * * ** *
111278 CA---A-GCATCAAT-TC-TTATAACAGTCTCCGTTCGTTTCTA-GA-TTGGGA-AGCCAAAACA
212 CATTGATGCTTTGGTGTCGCAAGAAAAG-CT--TTTC-TTTCCACCATTTTTGATAG---AATCA
* ** * * * * * * *** **
111334 CA-TTCCCT-TCATTAAGAT-ACA-AGACATTG-ATGCCTTGGTGTCGCAAGAAAAGCTTTTCTT
270 AAGTT-TGTCTC-TTAA-ATAAGACAAACA-AGAAT-ACTT-AT-ACG---G-ATCCCCATTCTT
** * * * * * * * * * ** * * *
111394 CCCACCGTTTTTG-A-TAGAATCAAAGTTTATCTCCTAAATACGACAAACATGAATACTCATA-C
324 TTCA-AGATTTGGCACCATAAACATAGTCT-TCT-C--ATTTGGATAAAC--G-ATATTGA-AGC
** * ** **** *** * * ** **
111456 TGATCCCCATTCTTT-TCAAGATTGGACACCATAAACA-TAGTATTCTCCTT-AGGATAAATGAT
380 T--T-----TGGTTTCGCAAGAAAGG-CTTTTTTCCCACCA--ATTTTTGTTGAGTCT-AA-G-T
* * **** *** * **
111518 ATTGATGCTTTGGTTTG-GCACGAAAGGC-TTTTTTCCCACCAACTTTTGTGAAGTC-TCA
432 -TCG-TGC-CTCAAATGAG-AC-AAA--CATGGGTT-CTAGTAA------T-AA-TCTTCA
** * ** * * * * * *
111576 GTTCATACTTTAAATGGGACAAACATGGATTCTAGTAATG-ATTTTCGTTCATTTTATGAT-TAG
1 -TTC--A-TTT---TGGG---ATTA-GGA-ACTACAAACGCATTCTC-CTC--TTTAGGATAAAT
** ** * * * ** * * * **
111639 GCATTATAAACACATTTTCCTCCTTAGGAT-AAATGATATTGATGATTT--TCT-TTTGCATGAA
51 G-A-TATTGA-TGATTTT-CT--TTTGCATGAAA--ATCTT--TTCTTTGCCCTATTTTCCTTTA
*** * * *** * * * * * **
111700 AATCTTTTTTTTGCTCTATT-TTTCTTTAA-ATCAAAG-TTC-ATAC-CTTAAATAAGACAAGCA
106 AATC-----AAAGTTC-ATTCCTTAAATAAGA-C-AAGCATCGATTCTCAT-AA-CAGTC-TCCA
** * * * * ** * * *
111760 -TCGATTC----TCGTG-A--C-AATCTCTATTCTTTTGAAGATTGGGA-AGCCAAAACACATTC
160 TTCTTTTCAAGATTGGGAAGCCAAAACAC-ATTCCCTT---CATTAGGATA--C--AAGACATT-
** * * * ** * *
111815 CCTTCATTAGGAT-ACAAGACATTGATGCTTTGGGGTCATAAGAAAAGCTTTTCTTTCCATCGTT
216 GATGC-TTTGG-TGTC-GCA---------------------AGAAAAGCTTTTCTTTCCACCATT
* * * *** * ** **
111879 TTTGTTAGAATCAAAGTTTCTCTCTTAAATAGGACAAACCTTAATACTCATACTAATCCTGATTC
257 TTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTC
* * * * * *
111944 TTTTCATGATTTGGCACCATAAACATAGTCTTATCATTAGGATACACGATATTGATGATTTGGTT
322 TTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTT
* * * ** * * *
112009 TCACAAGAAAGGCTTTCTTCCCACCAATTATTGTAAAATCTAAGTTCATGCCTCAAATGAGATAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
* ** *
112074 ACATGGATTCTAGTAACGATCTTGA
452 ACATGGGTTCTAGTAATAATCTTCA
* * * * * * ** * *
112099 TTCATTTTGTGATTAGGCACTATAAACGCATTTTGCTCTTTAGGATAATTGATGCTGACGTTTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * * *
112164 CTTTTACTTGGAAATATC-TTT-TTTGCCCAATTTTCTTTTATATCAAAGTTCATACCTTAAATA
66 CTTTTGCAT-GAAA-ATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATA
* * * **
112227 AGGCAAGCATCGATTCTTATAACAGTCTCCATTCATTTCAAGATTGGTTAGCCAAAACACATTCC
129 AGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* * * * * *
112292 CTTCATTAGGATACATGACATTGATGCTTAGGGGTCGTAAGAAAAGCTTTT-TTTACCATCTTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTT-CCACCATTT
* * ** ** * ** ***
112356 TTGATGGAATCAAAGTTTCTCTCTTAAATAAGACAAACGTGGGTTC-TAGTAATGAT-CTTTTTG
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTA-TACGGATCCCCATT-
* * * * * * * * ** * *
112419 CACTTT-GAGATTTGGAACTACAAGTGCAT--TCTCCTCATTAGGATAAGTGATATTGATGATTT
321 C-TTTTCAAGATTTGGCACCATAA--ACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTT
* * * * * * * **
112481 --TTTTGCATGGAAA-TCATTTCTTTGCCC-TC--TTTTCCT-TTAAATCAAAGTTAAAT-CCAT
383 GGTTTCGCA-AGAAAGGC-TTT-TTT-CCCACCAATTTT--TGTTGAGTCTAAGTT-CGTGCC-T
* * * * * * * *
112538 -AAATAAGACAAGCATCGATTCTCGTAACAGTCTCCA
440 CAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
** * * * * * * * *
112574 TTC-TTTTCAAGATTGGGAAACCA-AAACACATTC-CCTCCATTAGAATACAA-GACATTAATGC
1 TTCATTTT-GGGATTAGG-AACTACAAACGCATTCTCCT-CTTTAGGATA-AATGATATTGATGA
** * * * * * ** * * *
112635 TTTAGTGTCGCAAGAAAAGCTTTTCTTTCCACCGT-TTTT-GATTGAATCAAAGTAT-GTTTCTT
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CC-TATTTTCCTTTAAATCAAAGT-TCATTCCTT
* * * * ** * *
112697 AAATACGAAAAAC-TTGAATGCTCATGCTGATCCCCAG-CCCCATTCTTTTCAAGATTGGGCA-C
124 AAATAAGACAAGCATCG-AT--TC-T-C--AT-AACAGTCTCCATTCTTTTCAAGATTGGGAAGC
* * * * * * * * * * *
112759 CGTAAACATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGATTTTGCAAGAAATGCGTT
181 C-AAAACACATTCCCT-TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
* * * * * * * ** *
112823 T-TTCCCACCAATTTTTG-TA-AAGTCTAACTTCGTAC-CTCAAATGAGACAAACATGGGTTC-T
244 TCTTTCCACC-ATTTTTGATAGAA-TCAAAGTTTGT-CTCTTAAATAAGACAAACAAGAATACTT
* ** *** ** ** * * ** * * *
112883 AGGAATGATCTTTATTCATTTT-GGGATTAAG-AGCTACAAACGCA-TCCTCCTTATTCGGATAA
306 A-TACGGATCCCCATTC-TTTTCAAGATTTGGCA-CCATAAACATAGT-CTTCTCATTTGGATAA
* * * ** ** * ** ** * * ** * * *
112945 ATGATATTGATGATTTTCTTTTAC-GGAAAATCTTTTCTTTGC-CCTACTTTCCTTCAAATCAAA
367 ACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCACCAATTTTTGTT-GAGTCTAA
* * * * * * * * * * *
113008 GTTCATTCCTTAAATAAGACGAGCATCGATTCTCA-TAACAGTCTCCA
430 GTTCGTGCCTCAAATGAGACAAACATGGGTTCT-AGTAATAATCTTCA
** ** * * * * * * *
113055 TTC-TTTTCAAGATGGGGAAGCCA-AAACACATTC-CCTTCATTAGGTTGCAA-GACATTGATGC
1 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCC-TCTTTAGGAT-AAATGATATTGATGA
** * * * * * ** * * * *
113116 TTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCTCTTTT-GATCAAACCAAAGTTTA-TCTTTTA
62 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCTATTTTCCTTTAAATCAAAGTTCATTC-CTTA
* * * * * *
113179 AATAAGACAAACAT-GAAT-ACATGTACGGATC-CTCATTCTTTTCAAGATTGGGCA-CCATAAA
125 AATAAGACAAGCATCGATTCTCAT-AACAG-TCTC-CATTCTTTTCAAGATTGGGAAGCCA-AAA
* ** ** * * * * * * * *
113240 CATAGTTTTCTT-ATTTCGATACACGATATTGAAGCTTTAGTTTCACAAGAAAGGCTTTT-TTCC
186 CACA-TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTC
* * * * * * * * * ** * **
113303 CACCAATTTTT-TTTGAGTCTAGGTTCT-TGC-CTCAAGTGAGACAAACATGGGTTC-TAGTAAT
250 CACC-ATTTTTGATAGAATCAAAGTT-TGT-CTCTTAAATAAGACAAACAAGAATACTTA-TACG
* ** * * * *** * * * * *
113364 AATCTTCATTCATTTTGC--TATTAGGAACTGCAAACGTATTCTCCTCATTAGGATAAATGATAT
311 GATCCCCATTC-TTTT-CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATAT
* * * ** * * ** * ** * **
113427 TGATGATTAGG-CAC-CATAAACATAGTCTTCTCATTT-TGA-TACA-TGATATTGAAG-CTTTG
374 TGAAGCTTTGGTTTCGCA-AGA-A-AGGCTT-T--TTTCCCACCA-ATTTTTGTTG-AGTC-TAA
* ** *** * ** ** *
113486 GTT-TTGCAACAAAAGCTTTTTTTCCCACCAATTTTTGTT-GAGT-ATAAGTTCGTGCCTCAAA
430 GTTCGTGCCTC-AAA--------TGAGACAAACATGGGTTCTAGTAATAA--TC-T---TC--A
* *** * * * ** * ** * ** *
113547 TGAGACAAACATGGGTTCTAGTAA-T-GATCCTCATTCGTTTTGTGATTAGGCACTATAAACACA
1 T---TC-ATTTTGGGAT-TAGGAACTACAAACGCATTC-TCCTCT--TTAGG-A-TA-AATGATA
** ** * * *
113610 TTCTCCTCTTTTGGATAAATGATACTAGGGATATTCTTTTGCATGGAAACCTTTTCCTTGCCCTA
55 -T-T--GATGA--------------T-----T-TTCTTTTGCATGAAAATCTTTTCTTTGCCCTA
* * ** *
113675 TTTTACC-TTAAATCAAAGTTCATTCCATACATAAGACAAGCATCGATTCTTGTAACAGTCTCAA
96 TTTT-CCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCA
* *
113739 TTCTTTTCAAGATT-GGAAGCCAAAACACATTTCCTTTATTAGGATACAAGACATTGATGCTTTG
160 TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTG
* * *
113803 GTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTTATAGAATCAAGGTTTGTCTCTTAAATAAG
225 GTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAG
* * * * * *
113868 ACAAACATGAATACGTGTATGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCTGC
290 ACAAACAAGAATACTTATACGGATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTC
* * *
113933 TCATTTTGG-TACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTTTTCCCACCAATTTTT
355 TCA-TTTGGATAAACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTT
* * * *
113997 GTTGAGTATAAGTTTGTGCCTCAAATTAGACAAACATGGGTTCTAGTAATGATCTTCA
419 GTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCA
** * * * * *
114055 TTCATTTTGTAATTAGGCACTATAAACACATTCTTCTCTTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * *
114120 CTTTTGCATGGAAACCTTTTCTTTGCCCTATTTTCCCTTAAATCAAAGTTCATTCCTTACATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
*
114185 ACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATT-GGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
114249 TCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGTTTTTCTTTTCACCGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * *
114314 ATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAATACGTGTACAGATGCCCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * *
114379 CAAGATTGGGCATCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGTTTTGGCTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * * *
114444 AAGAAAGGCTTTTTTCCCAGCAGTTTTTGTTGAGTCTAAGTTCATCCCTCAAATGAGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
114509 GGGTTCTAGTAATAATCTTCT
456 GGGTTCTAGTAATAATCTTCA
* * *
114530 TTCATTTTGTGATTAGGAACT-CAAATGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
114594 CTTTTGCATCG-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATTC-AAGTTCATTTCTTAAATA
66 CTTTTGCAT-GAAAATCTTTTCTTTGCCCTATTTTCCTTTAAA-TCAAAGTTCATTCCTTAAATA
* * * *
114657 AGACAAGCATGGATTCTCATAATAGTC-CCAATTCTTTTCAAGATTGGGAAGCCAAAACAAAAT-
129 AGACAAGCATCGATTCTCATAACAGTCTCC-ATTCTTTTCAAGATTGGGAAGCCAAAACACATTC
** * * * * *
114720 CAATGATTAGGATACAAGACATTGATGCTTTTGTGCCGCAAGAAAAGCTTTTCTTTTCACCGTTT
193 CCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTT
* * * * * * *
114785 TTGATAGAATCAAAATTTGCCTCTTAAATAAGACAAACATGAATACATGTACGGATCCACATTTT
258 TTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* *
114850 TTTCAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTTGGTTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* * * *
114915 TGCAAGAAAAGCTTATTTCCCA-C-ATGTTTTTTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
388 CGCAAGAAAGGCTTTTTTCCCACCAAT-TTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
* *
114978 ACATGGGTTCTAATCATAATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* * ** **
115003 TTCATTTTTGTGATTAGGCACTACAAACATATTCTATTCTTTAGGATAAATGATATTGATGATTT
1 TTCA-TTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
115068 TCTTTTGCATGAAAATCTTTTTTTTTGCCCTATTTTCTTTTAAATCAAAGTTCATACCTTAAATA
65 TCTTTTGCATGAAAATC-TTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATA
** * * *
115133 AGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTC-TGATTGGGAAACCAAAACACATTCC
129 AGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
*
115197 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * *
115262 TGATAGAATCAAAGTTTGTTTCTTAAATATGGCAAACAAGAATACTTATACGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * *
115327 TTCAAG-TTTGGGCACCATAAACGTAGTCTTCTCACTTGGATACACGATATTGAAGCTTTGGTTT
324 TTCAAGATTT-GGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTT
* *
115391 TGCCAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
388 CGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
* * * *
115456 CATTGGTTTTAGTACTGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * * *
115480 TAT-ATTTTGTGATTAGGCACTATAAACACATTCTCCTCTTTATGATAAATGATATTGATAATTT
1 T-TCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* *
115544 TCTTTTGCATCAAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAAGTTCATAT-CTTAAATA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAT-TCCTTAAATA
* * * *
115608 AGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAAGCCAAAACACATTCT
129 AGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCC
* *
115673 CTTCACTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* *
115738 TGATGGAATCAAAGTTTATCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * ** * *
115803 TTCAA-ATTGGGCACCATAAACATAGCCTTGTCACGTGGATACACGATATTGAAGCTTTGGTTTT
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * ** * *
115867 GCAAGAAATGCATTTTTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
115932 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * *
115955 TTCATTTTGGGATTAGGAACTACAAATGCATTCTCCTCATTAAGATAAATGATAATGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
116020 CTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAATTCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * * *
116085 ATAAGAATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCAATACACATTCCCA
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * * ** *
116150 TCGTTAGGATACAAGAAATTGATTCGTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACTGTTTTGG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
116215 ATAGAATCAAAGTTTGTTTCTTAAA-ATAGAAAAACATGAATACGTGTACGGATCCCCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
116279 TCTAGATTAGGCACCATAAACAAAGTCTTCTCGTTTGGATACACGATATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* *
116344 CAAGAAAGG-TTTTTTCCCACCAATTTTTGTCGAGTCGAAGTTCGTGCCTCAAATGAGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* **
116408 TGGGTTGTAGTAACGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* * * * * *
116430 TTCATTTTGTGATTA-GACACTATAAACACATTCTCCGCATTAGGATAAATGATATTGATAATTT
1 TTCATTTTGGGATTAGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTT
* * *
116494 CCTTTTGCATGGAAATC-TTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * *
116558 GACAAGCATTGATTCTCGTAACAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* *
116623 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCTACCGA-TTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTT
* * * * * * *
116687 TGATAGAAACAATGTTTGCCTCTTAAATAAGACAAACATGAATACGTATAAGGATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * * *
116752 TTCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTATGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * *
116817 GCAAGAAAGGATTTTTTCCCACCAATTTTTGTTCAGTCTATGTTTGTTCCTCAAATGCGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * *
116882 TTGGGTTCTCGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** ** * * * * * * *
116905 AACATTTTGCAATTAGGCACCATAAACACATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
*
116969 TCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAG--C--T-C----AT--
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * *
117022 ----A--ATCGATTCTCGCAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * * *
117081 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGTTTTC
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
117146 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGAATCCCCATTCATT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * * *
117211 TCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCA
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * ** * ** * * *
117276 CAAGAAACACATTTTTCCGGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATG-GCATAAAC
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG-ACAAAC
*
117340 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * *
117363 TTTATTTTGGGATTAGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * **
117427 CTTTTGCGTGGAAATCTTTTCTTTGCAGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * **
117492 GCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAATGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * **
117557 TCATTAGGATACAAGACCTTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCATTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
117622 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * *
117687 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACAC-AGTTTTGAAGCTTTGGTTTTG
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGA-TATTGAAGCTTTGGTTTCG
* * ** ** *
117751 AAAGAAAGGATTTTTTTCCTGCCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAAC
390 CAAGAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
117816 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* *
117839 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
117904 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAAACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
117969 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *** * * *
118034 TCATTAGGATACATGACATTGAAGCTTTTGTGTTATAAGAAAAGCTTTTGTTTCCAACATTTTTC
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * ** *
118099 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACCTGAATACTCATACTAATCCCCATTCTTTA
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
118164 CAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACATGATATTGATGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * * *
118229 AAGAAATGCTTTTTTCCCACTAATTTTTGTAAATTCTAAGTCCGTACCTGAAATGAGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*
118294 GGGTTCTAGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
* * * * * * *
118315 TTCACTTTGGGATTAGGAACAACAAACGCATTCTCCGCATTACGATAAAGGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
118380 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
118445 ACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * **
118510 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
118575 ATAGAATCAATGTTTGTCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
118640 CAAGATTGGGCACCATATACTTAGTCTT-TCATTTGGATACACGGTATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
118704 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
118769 GCGTTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * * *
118790 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
118854 TCTTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * * *
118909 -ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCTAGACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
118973 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
119038 GATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATACTTATACGGATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *** * *
119103 TCATGA-TTGGCACCATAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * * ** * * * *
119167 CAAGAAACACGTTTTT-CCAGCCAATTTTGGTAAAGTATAAGTTTGTACCTCAAATGAGATAAAC
390 CAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
119231 ACGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * *
119254 TTTATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGAT-AGTGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
119318 CTTTTGCATTG-AAATCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
66 CTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * *
119382 GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCAATCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
119447 TTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGTAAGAAAAGCTTTCCTTTCCGCAATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * **
119512 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACGTATACGAATCCTTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
119577 TCAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTT--
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * **
119640 TAACAAAAGGATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
119705 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
*
119729 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
119794 CTTTTGCATGGAAATCTTTTCTTTACCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* *
119859 ACAAGCATTGATTCTCGTAACAGTCT-CATTTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
131 ACAAGCATCGATTCTCATAACAGTCTCCA-TTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
119923 TTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTTTTTCTACC-TATTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTT
* * * * ** * * * *
119987 TGATGGAAACAATGTTTGCCTCTTAAATAAGATGAACATGAATACGTATAAGGATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
120052 TTCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
120117 GCAAGAAAGGATTTTTTCCCACCAATTTTTGTTCAGCCTATGTTTGTTCCTCAAATGCGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * * *
120182 TTGGGTTCTCGTCATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** ** *
120205 AACATTTTGCAATTAGGCACCATAAACACAAACATTTTGCAATTAGGCACCATAAACACATTCTC
1 TTCATTTTGGGATTAGG-AAC-T----ACAAAC-----GC-ATT------C-T-----C---CTC
* * *
120270 TGTTTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTC
39 ---TTTAGGATAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTC
** *
120334 CTTTAAATCAAAG--C--T-C----AT------A--ATCGATTCTCGCAACAGTTTCCATTCTTT
101 CTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTT
** *
120382 TCAAGATTGGGAAGCCAAAACACATTCTGTTCATTAGGATACTAGACATTGATGCTTTGGTGTCG
166 TCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCG
* * * * *
120447 CAGGAAAAGCTTTTCTTTTCGCCGTTTTCGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
231 CAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAAC
* * * * * * * * *
120512 ATGAATACTTATACGAATCCCCTTTCATTTCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTA
296 AAGAATACTTATACGGATCCCCATTCTTTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTT
*** * * ** * ** * **
120577 GGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACACATTTTTCCGGCCAATTTTGGTAAAGT
361 GGATAAACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGT
* * * *
120642 ATAAGTTCGTACCTCAAATG-GCATAAACATGGGTTCTAGTAATGATCTTCA
426 CTAAGTTCGTGCCTCAAATGAG-ACAAACATGGGTTCTAGTAATAATCTTCA
* * * * *
120693 TTTATTTTGGGATTAGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
120757 CTTTTGCGTGGAAATCTTTTCTTTGTCGTATTTTCCTTTATATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
120822 GCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* **
120887 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
120952 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
121017 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACAC-AGTTTTGAAGCTCTGGTTTTG
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGA-TATTGAAGCTTTGGTTTCG
* ** ** * *
121081 -AATGAAAGGATTTTTTTCCTGCCAATTTTTGTAAAGTCTAGGTTCGTACCTCAAATGAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
121145 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* *
121169 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
121234 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAAACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
121299 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * ** * * *
121364 TCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACCAATTTTC
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * **
121429 ATAGAATCAAAGTTTGTCTATT-AATAAAGACAAACCTGAATACTCATACTAATCCCCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAAT-AAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * * * * *
121493 ACAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACATGATATTGATGCTTTGATTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * ** * * * *
121558 CAAGAAACGCTTTTTTCCCACTAATTTTTGTAAATTCTACGTCCGTACCTCAAATGAGACAAACA
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
121623 TGGGTTCTAGTAATGATCTTTA
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
121645 TTCACTTTGGGATTAGGAACAACAAACGCATTCTCCGCATTACGATAAAGGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
121710 CTTTTGCATGGAAATCTTTTCTTAGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
121775 ACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * **
121840 TCATAAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
121905 ATAGAATCAATGTTTGTCTCTTCAATAAGACAAACAAGAATACGTATACGGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * *
121970 TAAGATTGGGCACCATATACTTAGTCTT-TCATTTGGATACACGGTATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
122034 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
122099 GCGTTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * * *
122120 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
122184 TCTTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * *
122239 -ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* *
122303 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
122368 GATAGAATCAATGTTTGCCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * * *
122433 TCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGACGCTCTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * *
122498 CAAGAAAGGATTTTTTCCCACCAATTTTTGTTGAGTATATGTTTGTTCCTCAAATGCGACAAACT
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
** * *
122563 TTCGTTCTTGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
** * * * ** *
122585 AACATTTTGTGATTAGGCACTATAAATACATTCT-CTGTTTTAGGATAAATGATATTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* * *
122649 TCATTTGCATGAAAATCTTTTCTTTGCCTTATTTTCCTTTGAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * * *
122704 -ACAAGCATCGATTCTCGCAATAGTCTCCATTCTTTTCAAGATTTGGAAGCCAAGACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
122768 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGTAGGAAAAGCTTTTCTTTTCGCCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
*
122833 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGGATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * *
122898 TCATGATTGGGCACCATAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * * ** * * *
122963 CAAGAAACACGTTTTT-CCAGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATGAGATAAAC
390 CAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
123027 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * * *
123050 TTTATTTTGGGATTAGGAACTACAAGCGCATTCTCCACATTAAGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * *
123115 CTTTTGCTTGGAAATCCTTTCTTTGCCGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *
123180 GCAAGGATCGATTCTCATAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCAATCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
123245 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
123310 ATAGAATCAAAGTTTGTCTCTTAAATAAGTCAAACACGAATACATATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
123375 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTCGA
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * ** *
123440 AAGAAATGATTTTTTTCCCGCCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAA-GGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
123505 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
*
123527 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
123592 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* ** * *
123657 ACAAGCATCGATTTTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
123722 TCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTGTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * **
123787 ATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACCTA-ATTACTCATACTAATCCCCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
123851 TCAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACATGATATT-AATGCTTTGGTTTC
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAA-GCTTTGGTTTC
* * * ** * *
123915 GCAAGAAATGCCTTTTTCCCACTAATTTTTGTAAATTCTAAGTTCGTACCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
123980 ATGGGTTGTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * *
124003 TTCACTTTGGGATTAGGAACTACAAACGCATTCTCCGCATTACGATAAATGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * ** *
124068 CTTTCGCATGGAAATCTTTTCTTTTCCTTGCTTTCCTTTAAATCAAAGTTCATTCTTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * * * *
124133 ATAAGCATTGATTTTCGTAACAGTCTCAATTCTTTTCAAGATTGCGAAGCCAAAACACATTCGCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * * *
124198 TCATTAGGATACAAAACATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTTTTTTCCACCGTTTTT
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTCCACCATTTTT
* * * * * * *
124263 GATAGAATCAATGTTTATCTCTTCAATAAGACAAACATGAATGCGTATACGGATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
124328 TCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * * *
124393 TAAAAAAGGATTTTTTCCCACCAATTTTTGTTGAGT-TATGTTTGTTCCTCAAATGCGACAAACT
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* * * *
124457 TGCGTTCTTGTAATGATCCTCA
455 TGGGTTCTAGTAATAATCTTCA
** * * * * * *
124479 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
124543 TCTTTTACATGAAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * * *
124598 -ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCTAGACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
124662 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* *
124727 GATAGAATCAAAGTTTGTCTCTTCAATAAGACAAACATGAATACTTATACGGATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *** * * *
124792 TCATGA-TTGGCACCATAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCA
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * * *** * * * *
124856 CAAGAAACACGTTTTT-CCAGCCAATTTTGGAAAAGTATAAGTTTGTACCTCAAATGAGATAAAC
390 CAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
124920 ACGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * *
124943 TTTATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGAT-AGTGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
125007 CTTTTGCATTG-AAATCTTTTCTTTGCCATATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
66 CTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * * *
125071 GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCAATCCT
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
125136 TTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * **
125201 GATAGAATCAAAGTTTATCTCTTAAATAAGACAAACATGAATACGTATACGAATCCTTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
125266 TCAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTT--
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * **
125329 TAACGAAAGGATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATGAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
125394 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
*
125418 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
125483 CTTTTGCATGAAAATCTTTTCTTTGTCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * *
125548 ACAAGCATTGATTCTCGTAACAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* *
125613 TCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-TATTTT
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTTT
* * * * * * *
125676 GATAGAAACAATGTTTGCCTCTTAAATAAGACAAACATGAATACGTATAAGGATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
125741 TCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * * *
125806 CAAGAAAGGATTTTTTCCCACCAATTTTTGTTCAGCCTATGTTTGTTCCTCAAATGCGACAAACT
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
125871 TGGGTTCTCGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
** ** * * * * * *
125893 AACATTTTGCAATTAGGCACCATAAACGCATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
125957 TCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATC-AA-TGC--T-C----AT--
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * *
126010 ----A--ATCGATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * * *
126069 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCACAGGAAAAGCTTTTCTTTTCGCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
126134 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGAATCCCCATTCATT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * *
126199 TCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTCGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * ** * ** * * *
126264 CAAGAAACACATTTTTCCGGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATG-GCATAAAC
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG-ACAAAC
*
126328 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * *
126351 TTTATTTTGGGATTTGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
** * * *
126415 CTTTTGTGTGGAAATCTTTTCTTTGTCGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *
126480 GCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* **
126545 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
126610 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAGGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * *
126675 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACATA-G-TTTTGAAGCTCTGGTTTT
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATA-A-ACGATATTGAAGCTTTGGTTTC
* ** ** * * *
126738 G-AATGAAAGGATTTTTTTCCTGCCAATTTTTGTAAAGTCTAGGTTCGTACCTCAAATAAGACAA
389 GCAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
*
126802 ACATGGGTTCTAGTAATGATCTTCA
452 ACATGGGTTCTAGTAATAATCTTCA
* *
126827 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
126892 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAAACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * * *
126957 ACAAGCATCGATTCTTGTAACAGTCTCCATTGTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * ** * *
127022 TCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACCATTTTTC
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * ** * *
127087 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACCTGAATACTCATACTAATCTCCATTCTTTA
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
127152 CAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACATGATATTGACGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * *
127217 AAGAAATGCTTTTTTCCCACTAA-TTTTGTAAATTCTAAGTCCGTACCTCAAATGAGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* *
127281 GGGTTCTAGTAATGATCTTTA
456 GGGTTCTAGTAATAATCTTCA
* * * * * * *
127302 TTCACTTTGGGATTAGGAACAACAAACGCATTCTCCGCATTACGATAAAGGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* ** *
127367 CTTTTGCATGGAAATCTTCACTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
127432 ACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * **
127497 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
127562 ATAGAATCAATGTTTGTCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
127627 CAAGATTGGGCACCATATACTTAGTCTT-TCATTTGGATACACGGTATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
127691 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
127756 GCGTTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * * *
127777 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
127841 TCTTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * *
127896 -ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* *
127960 TTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-TATTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTT
* * * * * * *
128023 TGATAGAAACAATGTTTGCCTCTTAAATAAGACAAACATGAATACGTATAAGGATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
128088 TTCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
128153 GCAAGAAAGGATTTTTTCCCACCAATTTTTGTTCAGCCTATGTTTGTTCCTCAAATGCGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * *
128218 TTGGGTTCTCGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** ** * * * * * * *
128241 AACATTTTGCAATTAGGCACCATAAACACATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* * *
128305 TCTTTTGCGTG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATC-AA-TGC--T-C----AT--
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * **
128358 ----A--ATCGATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTTTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
128417 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
128482 GATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTTATACGAATCCCCATTCATT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * *
128547 TCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * ** * ** * * *
128612 CAAGAAACACATTTTTCCGGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATG-GCATAAAC
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG-ACAAAC
*
128676 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * *
128699 TTTATTTTGGGATTAGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
** * * *
128763 CTTTTGTGTGGAAATCTTTTCTTTGTCGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *
128828 GCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* **
128893 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
128958 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACAGGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
129023 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACATCG-TTTTGAAGCTCTGGTTTTG
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATA-AACGATATTGAAGCTTTGGTTTCG
* ** ** * *
129087 -AATGAAAGGATTTTTTTCCTGCCAATTTTTGTAAAGTCTAGGTTCGTACCTCAAATGAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
129151 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* *
129175 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
129240 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAAACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
129305 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * ** * * *
129370 TCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACAATTTTTC
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * ** * *
129435 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACCTGAATACTCATACTAATCTCCATTCTTTA
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * * *
129500 CAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGGTACATGATATTGATGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * * *
129565 AAGAAATGCTTTTTTCCCACTAATTTTTGTAAATTCTAAGTCCGTACCTCAAATGAGACAAACAT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
129630 GGGCTCTAGTAATGATCTTTA
456 GGGTTCTAGTAATAATCTTCA
* * * * * * *
129651 TTCACTTTGGGATTAGGAACAACAAACGCATTCTCCGCATTACGATAAAGGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
129716 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
129781 ACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * **
129846 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
129911 ATAGAATCAATGTTTGTCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * *
129976 CAAGATTGGGCACCATATACTTAGTCTT-TCATTTGGATACACGGTATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
130040 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
*** * *
130105 CCATTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * * *
130126 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
130190 TCTTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * *
130245 -ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* *
130309 TTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-TATTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCAT-TTT
* * * * * * *
130372 TGATAGAAACAATGTTTGCCTCTTAAATAAGACAAACATGAATACGTATAAGGATCCTCATTCTT
259 TGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTT
* * * * * *
130437 TTCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTC
324 TTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTC
* * * * * * *
130502 GCAAGAAAGGATTTTTTCCCACCAATTTTTGTTCAGCCTATGTTTGTTCCTCAAATGCGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* * *
130567 TTGGGTTCTCGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
** ** * * * * * * *
130590 AACATTTTGCAATTAGGCACCATAAACACATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
130654 TCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATC-AA-TGC--T-C----AT--
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * *
130707 ----A--ATCGATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
130766 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * *
130831 GATAGAATCAAAGTTTGTCTCTTAAATAGGACAAACATGAATACTTATACGAATCCCCATTCATT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * *
130896 TCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * ** * ** * * *
130961 CAAGAAACACATTTTTCCGGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATG-GCATAAAC
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG-ACAAAC
*
131025 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * *
131048 TTTATTTTGGGATTAGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * **
131112 CTTTTGCGTGGAAATCTTTTCTTTGCAGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *
131177 GCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* **
131242 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
131307 ATAGAATCAAAGTTTGTCTCTTAAATAAAACAAACATGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * *
131372 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACAC-AGTTTTGAAGCTCTGGTTTTG
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGA-TATTGAAGCTTTGGTTTCG
* ** ** * *
131436 -AATGAAAGGATTTTTTTCCTGCCAATTTTTGTAAAGTCTAGGTTCGTACCTCAAATGAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
131500 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* *
131524 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGGTGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
131589 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCAAACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
131654 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * ** * *
131719 TCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACCATTTTTC
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* ** * ** * *
131784 ATAGAATCAAAGTTTGTCTCTTAAAAAAGACAAACCTGAATACTCATACTAATCTCCATTCTTTA
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * *
131849 CAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACACGATATTGACGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
* * ** * *
131914 AAGAAATGCTTTTTTCCCACTAATTTTTGTAAATTCTAAGTCCGTAG-CTCAAATGAGACAAACA
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGT-GCCTCAAATGAGACAAACA
* *
131978 TGGGTTCTAGTAATGATCTTTA
455 TGGGTTCTAGTAATAATCTTCA
* * * * * * *
132000 TTCACTTTGGGATTAGGAACAACAAACGCATTCTCCGCATTACGATAAAGGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
132065 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * *
132130 ACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * **
132195 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTGTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
132260 ATAGAATCAATGTTTGTCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * *
132325 CAAGATTGGGCACCATATACTTAGTCTT-TCATTTGGATACACGGTATTGAAGCGTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
132389 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
132454 GCGTTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * * *
132475 AACATTTTGTGATTAGGCACTATAAACACATTCT-CTGTTTTAGGATAAATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
132539 TCTTTTGCATGAAAATCTTTTATTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * *
132594 -ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCAAAACACATTCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
132658 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCTCCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * * * *
132723 GATAGAATCAATGTTTGCCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *
132788 TCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * * * *
132853 CAAGAAAGG-ATTTTTCCCACCAATTTTTGTTCAGCCTATGTTTGTTCCTCAAATGCGACAAACT
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
132917 TGGGTTCTCGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
** ** * * * * * * *
132939 AACATTTTGCAATTAGGCACCATAAACACATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
* *
133003 TCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATC-AA-TGC--T-C----AT--
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * *
133056 ----A--ATCGATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * * *
133115 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGTTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
133180 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACTTATACGAATCCCCATTCATT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * *** * *
133245 TCAAGATTGGGCACCTTAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * * ** * * *
133310 CAAGAAACACATTTTT-CCAGCCAATTTTGGTAAAGTATAAGTTCGTACCTCAAATG-GCATAAA
390 CAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAG-ACAAA
*
133373 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
* * * * *
133397 TTTATTTTGGGATTAGGAACTATAAA-GCATTCTCCTCATTAGGATAAATGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
133461 CTTTTGCGTGGAAATCTTTTCTTTGTCGTATTTTCCTTCAAATCAAAGTTCATTCCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * *
133526 GCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
133591 TCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * *
133656 ATAGAGTCAAAGTTTGTCTCTTAAATAAGTCAAACACGAATACGTATACGAATCCCTATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * * * * * * **
133721 CAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTCAA
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * ** *
133786 AAGAAATGATTTTTTTCCCGCCAAATTTTGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACA
391 AAGAAA-GGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
*
133851 TGGGTTCTAGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
* *
133873 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTCGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * *
133938 CTTTTGCATGGAAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
134003 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * *
134068 TCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTCTGTTTCCACCATTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * * **
134133 ATAGAATCAAAGTTTCTCTCTTAAAAAAGACAAACCTA-ATTACTCATACTAATCCCCATTCTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAA-CAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
134197 TCAGGATTTGGCACCGTAAACATAATCTTCTCAATAGGATACATGATATT-AATGCTTTGGTTTC
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAA-GCTTTGGTTTC
* * ** ** * *
134261 GCAAGAAATGCCTTTTTCCCAGTAATTTTTGTAAATTCTAAGTTCGTACCTCAAATGAGACAAAC
389 GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
*
134326 ATGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * *
134349 TTCACTTTGGGATTAGGAACTACAAACGCGTTCTCCGCATTACGATAAATGATATTGATGATTTC
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
134414 CTTTCGCATGGAAATCTTTTCTTTTCCCTGTTTTCCTTTAAATCAAAGTTCATTCTTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * * * *
134479 ATAAGCATTGATTTTCGTAACAGTCTCAATTCTTTTCAAGATTGCGAAGCCAAAACACATTCGCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * *
134544 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTTTTTTCCACCGTTTTT
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC-TTTTCTTTCCACCATTTTT
* * * * *
134609 GATAGAATCAATGTTTGTCTCTTCAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * *
134674 TCAAGATTGGGCACCATATACTTAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTTG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * * * *
134739 CAAGAAAGGATTTTTTCCCACCAATTTTTGTTGAGT-TATGTTTGTTCCTCAAATGCGACAAACT
390 CAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACA
* *
134803 TGGGTTCTCGTAATGATCTTCA
455 TGGGTTCTAGTAATAATCTTCA
** ** * * * * * * *
134825 AACATTTTGCAATTAGGCACCATAAACACATTCT-CTGTTTTAGGATATATGATACTGATGATTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCT-CTTTAGGATAAATGATATTGATGATTT
*
134889 TCTTTTGCATG-AAATCTTTTCTTTGCCTTATTTTCCTTTAAATCAAAG----TT-C----AT-A
65 TCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
** * * * *
134943 -ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCCCAGACACATTCTC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * * *
135007 TTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * *
135072 GATAGAATCAAAGTTTCTCTCTTCAATAAGACAAACATGAATACTTATACGGATCCCCATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * *** * *
135137 TCATGA-TTGGCACCATAATCATAGTCTTCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCG
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
** * * ** * * * *
135201 CAAGAAACACGTTTTT-CCAGCCAATTTTGGTAAAGTATAAGTTTGTACCTCAAATGAGATAAAC
390 CAAGAAAGGCTTTTTTCCCA-CCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAAC
* *
135265 ACGGGTTCTAGTAATGATCTTCA
454 ATGGGTTCTAGTAATAATCTTCA
* * * * * *
135288 TTTATTTTGGGATTAGGAACTACAAACACATTCTCCTCATTAGGAT-AGTGATATTAATAATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
135352 CTTTTGCATTG-AAATCTTTTCTTTGCCGTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
66 CTTTTGCA-TGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * *
135416 GGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCAAAACGCAATCCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCC
* * *
135481 TTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTATTTTT
195 TTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTT
* * * **
135546 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACGTATACGAATCCTTATTCTTT
260 GATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTT
* * * * * * * *
135611 TCAAGATTAGGCACCATTAACTTAGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTT-T
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCG
* * * ** *
135675 TAACGAAAGGATTTTTTTCCCGCCAATTTTTGTAAAGTCTAAGTTCGTGCCTCAAATAAGACAAA
390 CAA-GAAAGG-CTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAA
*
135740 CATGGGTTCTAGTAATGATCTTCA
453 CATGGGTTCTAGTAATAATCTTCA
*
135764 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCATTAGGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* *
135829 CTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
** * *
135894 ACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACATTTCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* ** * *
135959 TCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTGTTTCCACCATTCTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * *
136024 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACGTATACAGATCCTCATTCTTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
* * ** * * * * * *
136089 CAAGATTGGGCCCCATTTACTTTGTCTTTTCATTTGGATACATGGTATTGAAGCTTTGGTTTCGC
326 CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
** * * * * *
136154 AAGAAAGGAATTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAATGCGACAAACTT
391 AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
* * *
136219 GCGTTCTTGTAATGATCTTCA
456 GGGTTCTAGTAATAATCTTCA
** * * * * *
136240 AACACTTTGTG-TT------T----A-G-GTT-T-GT-TTTAGGATAAATGATACTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* **
136289 CCTTTGCATGAAAATCTTTTCTTTGCGTTATTTTCCTTTAAATCAAAG----TT-C----AT-A-
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
**
136343 ACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * * * *
136408 TCATTAGGATACATGGCATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCATTCCACCTTTTTTG
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * *
136473 ATAGAATCAAAGTTTATCTCTTAAATATGACAAACATGAATACTCT-TACGTATCCCCATACTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACT-TATACGGATCCCCATTCTTT
* * * ** *
136537 TCAAGAGTTGGCACCATAAACATAGTCTTTTCCTAGGGAT--ACGTCATATT-AATGCCTTGGTT
325 TCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACG--ATATTGAA-GCTTTGGTT
* * ** * * *
136599 TTGCAAGAAAGG-GTTTTTCCTCACCAATTTTTGTAAAGTTTATGTTCATGCCTCAAATGAGACA
387 TCGCAAGAAAGGCTTTTTTCC-CACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACA
* * * *
136663 AACATAGATTCTAGTAATGATCGTCA
451 AACATGGGTTCTAGTAATAATCTTCA
* * * * * *
136689 TTCATTTTGTGATTAGGCACTATAAACACATTTTCCTCTTTAGGAGAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
*
136754 CTTTTGCATGAAAATCTTTTCTTTGCCCTACTTTT-CTTTAAATCAAAGTTCATACCTTAAATAA
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTA-TTTTCCTTTAAATCAAAGTTCATTCCTTAAATAA
* * * * *
136818 GACAAGCATCAATTCTCGTAATAGTCTCCATTCTCTTCAAGATTTGGGAAGCCAAAACGCATTCC
130 GACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGA-TTGGGAAGCCAAAACACATTCC
* * * *
136883 CTTCCTTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCTTTCCGCCGTTTT
194 CTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTT
* * * *
136948 TGATATAATCAAA-TTATGTCTCTTAAATATGACAAACATGAGTACTTATACGGATCCCCATTCT
259 TGATAGAATCAAAGTT-TGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCT
* * ** * * *
137012 TTTCATGATTCGGTGCCATAAACATAGTCTTATCATTAGGATAGAA-GATATTGATGCTTTGGTT
323 TTTCAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATA-AACGATATTGAAGCTTTGGTT
* ** *
137076 TCGCAAGAAAGGCTTTTTTCCCACCAGTTTTTGTAAAGTCTAAGTTCGTGCCTTAAATGAGACAA
387 TCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAA
* * *
137141 ACATGGATTCTAGTAATGATCTTGA
452 ACATGGGTTCTAGTAATAATCTTCA
* * * * * * * * **
137166 TTCTTTTTGTGATGAAGCACTATAAACACATTATCCTCTTTTTGATAAATGATATTGATGATTTT
1 TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
* * * * *
137231 CTTTTTCTTGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAACAAG
66 CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
* * * * * * * * * *
137296 ACAAGCATCCATTGTCGTAAAAGCCTCCATTATTTCCCATATTGGGAAGCCAAAACATATTCCCT
131 ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
* * * * * *
137361 TCATTAGGATACATGACATTGCTGCTTCGGTGTCGCAAGAAATGCTTTTCTTTCCGCCATTTTTA
196 TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
* * * * ** * * * *
137426 ATAGAATCAAACTTTGTCTCTCAAATACGACAAGCGTGACTACTCATACTGATCCCCATTATTTT
261 ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
137491 CAAGA-TTGAGCACCATAAACATAGTCTTCTC
326 CAAGATTTG-GCACCATAAACATAGTCTTCTC
137522 CTAAAATTTG
Statistics
Matches: 60682, Mismatches: 11038, Indels: 7952
0.76 0.14 0.10
Matches are distributed among these distances:
428 1 0.00
429 106 0.00
430 81 0.00
431 1435 0.02
432 153 0.00
433 31 0.00
434 4 0.00
435 4 0.00
436 31 0.00
437 14 0.00
438 11 0.00
439 17 0.00
440 3 0.00
441 5 0.00
442 1 0.00
443 9 0.00
444 409 0.01
445 2641 0.04
446 338 0.01
447 22 0.00
448 90 0.00
449 328 0.01
450 353 0.01
451 788 0.01
452 355 0.01
453 587 0.01
454 609 0.01
455 24 0.00
456 20 0.00
457 771 0.01
458 1225 0.02
459 62 0.00
460 116 0.00
461 30 0.00
462 142 0.00
463 736 0.01
464 1744 0.03
465 861 0.01
466 90 0.00
467 109 0.00
468 59 0.00
469 173 0.00
470 497 0.01
471 4039 0.07
472 1498 0.02
473 566 0.01
474 2604 0.04
475 11098 0.18
476 13279 0.22
477 6270 0.10
478 144 0.00
479 63 0.00
480 266 0.00
481 534 0.01
482 272 0.00
483 28 0.00
484 42 0.00
485 22 0.00
486 36 0.00
487 40 0.00
488 341 0.01
489 43 0.00
490 59 0.00
491 81 0.00
492 102 0.00
493 59 0.00
494 78 0.00
495 58 0.00
496 38 0.00
497 31 0.00
498 69 0.00
499 94 0.00
500 74 0.00
501 60 0.00
502 84 0.00
503 106 0.00
504 144 0.00
505 139 0.00
506 305 0.01
507 190 0.00
508 88 0.00
509 89 0.00
510 100 0.00
511 253 0.00
512 168 0.00
513 48 0.00
514 33 0.00
515 27 0.00
516 36 0.00
517 26 0.00
518 17 0.00
519 26 0.00
520 21 0.00
521 34 0.00
522 68 0.00
523 44 0.00
524 96 0.00
525 180 0.00
526 57 0.00
527 43 0.00
528 55 0.00
529 58 0.00
530 81 0.00
531 68 0.00
532 73 0.00
533 73 0.00
534 86 0.00
535 50 0.00
536 30 0.00
537 25 0.00
538 27 0.00
539 34 0.00
540 16 0.00
541 43 0.00
542 7 0.00
543 22 0.00
544 10 0.00
545 12 0.00
546 27 0.00
547 24 0.00
548 19 0.00
549 37 0.00
550 19 0.00
551 26 0.00
552 22 0.00
553 25 0.00
554 12 0.00
555 2 0.00
556 2 0.00
557 31 0.00
558 103 0.00
559 46 0.00
560 9 0.00
561 4 0.00
562 8 0.00
563 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.36
Consensus pattern (476 bp):
TTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCTTTAGGATAAATGATATTGATGATTTT
CTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAG
ACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCT
TCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTG
ATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACAAGAATACTTATACGGATCCCCATTCTTTT
CAAGATTTGGCACCATAAACATAGTCTTCTCATTTGGATAAACGATATTGAAGCTTTGGTTTCGC
AAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
GGGTTCTAGTAATAATCTTCA
Found at i:66893 original size:159 final size:159
Alignment explanation
Indices: 65706--66954 Score: 475
Period size: 159 Copynumber: 7.9 Consensus size: 159
65696 AATAGTCTCC
* * * * * * *
65706 ATTCTTTTCAAGATTAGGAAGCCA-AAACACATTC-CCTTCATTAGAATACAAGACATTGATGCT
1 ATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAGCT
* * * * * * * *
65769 TTCGTGTCGCAAGAAAAGCTTTT-TTTTCATCCGTTTTTGATAGAATCAAAATT-TTCCTCTTAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCA-CCATTTTTGATTGAATCAAAGTTCGTAC-CTTAA
** * * * *
65832 ATAAGACAAACATGAGTACGTGTACGGATCCAT
127 ATAAGACAAACAACAATACTTATACGGATCCCT
* * * * * * *
65865 ATTCTTTTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCTTT
1 ATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCTTT
** * * * * *
65930 GGTTTCATAAGAAAAGC-TTT-TTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGCCTCAAAT
66 GGTTTCGCAAGAAAAGCTTTTCTTTC-CACCA-TTTTTGATTGAATCAAAGTTCGTACCTTAAAT
* *** * *** *
65992 GAGACAAACAAGGGTTC-TAGTAATAAT-CTT
129 AAGACAAACAACAATACTTA-TACGGATCCCT
* * * * * * * * * * *
66022 CATTCATTTTTATGATTAGGCACTATAAACATATTCTCCTC-TTTAGGATAAATGATATTGATGA
1 -ATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTT-GGATACACGATATTGAAGC
** * * * * *** * ** *
66086 TTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCTTTAAATCAAAGTTTATACTTTAA
63 TTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCTTAA
* * * * *
66150 ATAAGACAAGCATCGACT-CTCATAACAG-TCTCC-
127 ATAAGACAAACAAC-AATACTTAT-ACGGATC-CCT
*** * * * * * * *
66183 ATTCTTTTGTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCAAGACATTGATGCT
1 ATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAGCT
** * * * * *
66246 TTGGCATCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTGTTAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTAAA
* * *
66310 TAAGACATACAAGAATACTTATATGGATCCCT
128 TAAGACAAACAACAATACTTATACGGATCCCT
** ** * *
66342 ATTCTTTTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGCTT
1 ATTCTTTTCAAGATTT-GGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCTT
* * * * * * *
66406 TGGTTTCACAAGAAAGGCTTTT-TTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCCTCAAAT
65 TGGTTTCGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATTGAATCAAAGTTCGTACCTTAAAT
* * * ** *
66469 GAGACAAACATCAAT-TTTAGTAATGAT-CTT
129 AAGACAAACAACAATACTTA-TACGGATCCCT
* ** * * * *
66499 CATACATTTT-GTGATTAGGCACTATAAACACATTC-TC-CGATTTAGGATAAACGATATTGATA
1 -ATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTC-ATTT-GGATACACGATATTGA-A
* ** * * * * *** * *
66561 -ATTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCTTTAAATCAAAGTTCATACCTT
61 GCTTTGGTTTCGCAAGAAAAGCTTTTCTTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCTT
* * * * * *
66624 CAATAGGACAAGCATCAATTCTCGTA-ACAG-TCTCC-
125 AAATAAGACAAACAACAATACT--TATACGGATC-CCT
* * ** * * *
66659 ATTCTTTTCAGGATTGGGAAGCCA-AAACACATT-TTCTTCATCAGGATACAAGACATTGATGCT
1 ATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAGCT
* * * * *
66722 TTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-CTTTTAAA
64 TTGGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTAAA
*
66786 TAAGACAAACAAGAATACTTATACGGATCCCT
128 TAAGACAAACAACAATACTTATACGGATCCCT
* * * *
66818 ATTCTTTTCAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCTTT
1 ATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCTTT
* * * * * *
66883 GGTTTTGCAAGAAACGCATTTTC--TCTACCAATTTTTG--TAAAGTCTAAGTTCGTACCTCAAA
66 GGTTTCGCAAGAAAAGC-TTTTCTTTCCACC-ATTTTTGATTGAA-TCAAAGTTCGTACCTTAAA
*
66944 TGAGACAAACA
128 TAAGACAAACA
66955 TGGGTTCTAG
Statistics
Matches: 789, Mismatches: 238, Indels: 127
0.68 0.21 0.11
Matches are distributed among these distances:
156 1 0.00
157 18 0.02
158 197 0.25
159 498 0.63
160 62 0.08
161 9 0.01
162 4 0.01
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (159 bp):
ATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCTTT
GGTTTCGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATTGAATCAAAGTTCGTACCTTAAATAA
GACAAACAACAATACTTATACGGATCCCT
Found at i:78498 original size:159 final size:158
Alignment explanation
Indices: 77463--78559 Score: 439
Period size: 159 Copynumber: 6.9 Consensus size: 158
77453 ATCTGATACT
* * * * *
77463 GATCCCCATTCTTTTCAAGATTGGGCACCATAAAC-CTAGTCTTCTCATTTGGATAAATGATATT
1 GATCCCCATTCTTTTCAAGATTTGGAACCATAAACAC-ATTCTTCTCATTTGGATACACGATATT
* * * * * * *
77527 GAAGCTTTGGTTTCGTAAGAAAAGC-TTTTTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGC
65 AAAGCTTTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TTTTTGATTAAATCAAAGTTCGTAC
* * *** * *
77590 CTCAAATGAGACAAACAAGGGTTC-TAGTAAT
128 CTTAAATAAGACAAACAACAATACTTA-TAAG
* *** * * * * * * * * *
77621 AATCTTAATTCATTTTTATGATTAGGCACTATAAACATATTCTCCTC-TTTAGGATAAATGATAT
1 GATCCCCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTT-GGATACACGATAT
* * * ** * * * *** *
77685 TGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCTTTAAATCAAAGTTCATA
64 TAAAGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTAAATCAAAGTTCGTA
* * * * *
77749 CTTTAAATAAGACAAGCATCGACT-CTCATAA-
127 CCTTAAATAAGACAAACAAC-AATACTTATAAG
* * *** * * * * *
77780 CAGTCTCCATTCTTTTGTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCTA-GAC
1 GA-TCCCCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATAC-ACGAT
* * * ** * * *
77842 ATTGATGCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAAAATCAAAGTTTGT
62 ATTAAAGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTAAATCAAAGTTCGT
* * *
77907 -CTGTTAAATAAGACAAACAAGAATACTTATACG
126 AC-CTTAAATAAGACAAACAACAATACTTATAAG
* ** ** *
77940 GATCCCTATTCTTTTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATT
1 GATCCCCATTCTTTTCAAGATTT-GGAACCATAAACACATTCTTCTCATTTGGATACACGATATT
** * * * * * *
78004 AAAGCTTTGGTTTCCCAAGAAAGGCTTTTTTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCC
65 AAAGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTAAATCAAAGTTCGTACC
* * * * *
78068 TCAAATGAGACAAACATCAAT-TTTAGTAAT
129 TTAAATAAGACAAACAACAATACTTA-TAAG
** * ** * * * *
78098 GATCTTCATACATTTT-GTGATTAGGCACTATAAACACATTC-TC-CGATTTAGGATAAACGATA
1 GATCCCCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTC-ATTT-GGATACACGATA
** * * ***
78160 TTGATAA--TTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCTTTAAATCAAAGTTC
63 TT-A-AAGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTAAATCAAAGTTC
* * * * * * **
78222 ATACCTTCAATAGGACAAGCATCAATTCTCGTAA-
124 GTACCTTAAATAAGACAAACAACAATACTTATAAG
* * * * * ** * *
78256 CAGTCTCCATTCTTTCCAGGATTGGGAAGCCA-AAACACATT-TTCTTCATCAGGATACAAGACA
1 GA-TCCCCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATA
* * * * ** * *
78319 TTGATGCTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-
63 TTAAAGCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTAAATCAAAGTTCGTA
* *
78383 CTTTTAAATAAGACAAACAAGAATACTTATAAG
127 C-CTTAAATAAGACAAACAACAATACTTATAAG
* * * *
78416 GATCCCCATTCTTTTCAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATA
1 GATCCCCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTA
* * * *
78481 AAGCTTTGGTTTTGCAAGAAACGCATTTTTTCTACCAATTTTTG--TAAAGTCTAAGTTCGTACC
66 AAGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTAAA-TCAAAGTTCGTACC
* *
78544 TCAAATGAGACAAACA
129 TTAAATAAGACAAACA
78560 TGGGTTCTAG
Statistics
Matches: 679, Mismatches: 209, Indels: 102
0.69 0.21 0.10
Matches are distributed among these distances:
156 1 0.00
157 12 0.02
158 151 0.22
159 443 0.65
160 64 0.09
161 7 0.01
162 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.14, T:0.36
Consensus pattern (158 bp):
GATCCCCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTA
AAGCTTTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTTTGATTAAATCAAAGTTCGTACCTT
AAATAAGACAAACAACAATACTTATAAG
Found at i:82219 original size:159 final size:158
Alignment explanation
Indices: 81030--82280 Score: 490
Period size: 159 Copynumber: 7.9 Consensus size: 158
81020 GTAATAGTCT
* * * * * * *
81030 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGAATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * * * *
81093 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATT-TTCCTCTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
** * *** *
81157 AATAAGACAAACATGAGTACACGTACGAATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
** * * * * * * *
81189 ATATTCTTTTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * * *
81254 TTGGTTTCGTAAGAAAAGC-TTTTTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGCCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TTTTTGATTGAATCAAAGTTCGTACCTTAAA
* *** * *** *
81317 TGAGACAAACAAGGGTTC-TAGTAATAATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
** * * * * * * * * * *
81347 TAATTCATTTTTATGATTAGGCACTATAAACATATTCTCCTC-TTTAGGATAAATGATATTGATG
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTT-GGATACACGATATTGAAG
* ** * * * *** * * *
81411 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCTTTAAATCAAAGTTCATACTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCTTA
* * * * * *
81475 AATAAGACAAGCATCGACT-CTCATAACAG-TCT
127 AATAAGACAAACAAC-AATACTTAT-ACGGATCC
*** * * * * * *
81507 CCATTCTTTTGTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCTA-GACATTGAT
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATAC-ACGATATTGAA
* ** * * * *
81569 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTGTT
63 GCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTT
*
81633 AAATAAGACAAACAAGAATACTTATACGGATCC
126 AAATAAGACAAACAACAATACTTATACGGATCC
* ** ** * *
81666 CTATTCTTTTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGC
1 CCATTCTTTTCAAGATTT-GGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGC
** * * * * * *
81730 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAATCAAAGTTCGTACCTTAAA
* * * ** *
81794 TGAGACAAACATCAAT-TTTAGTAATGATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
* * ** * * * *
81824 TCATACATTTT-GTGATTAGGCACTATAAACACATTC-TC-CGATTTAGGATAAACGATATTGAT
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTC-ATTT-GGATACACGATATTGA-
* ** * * *** * *
81886 A-ATTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCTTTAAATCAAAGTTCATACCT
62 AGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCT
* * * * * * *
81949 TCAATAGGACAAGCATCAATTCTCGTA-ACAG-TCT
125 TAAATAAGACAAACAACAATACT--TATACGGATCC
* * * ** * * *
81983 CCATTCTTTCCAGGATTGGGAAGCCA-AAACACATT-TTCTTCATCAGGATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * *
82046 CTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-CTTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
*
82110 AATAAGACAAACAAGAATACTTATACGGATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
* * * *
82142 CCATTCTTTTCAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * *
82207 TTGGTTTTGCAAGAAACGCATTTTTTCTACCAATTTTTG--TAAAGTCTAAGTTCGTACCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAA-TCAAAGTTCGTACCTTAAA
*
82270 TGAGACAAACA
129 TAAGACAAACA
82281 TGGGTTCTAG
Statistics
Matches: 796, Mismatches: 240, Indels: 113
0.69 0.21 0.10
Matches are distributed among these distances:
156 1 0.00
157 17 0.02
158 198 0.25
159 508 0.64
160 61 0.08
161 8 0.01
162 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
TTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTTTGATTGAATCAAAGTTCGTACCTTAAATA
AGACAAACAACAATACTTATACGGATCC
Found at i:85940 original size:159 final size:158
Alignment explanation
Indices: 84751--86001 Score: 490
Period size: 159 Copynumber: 7.9 Consensus size: 158
84741 GTAATAGTCT
* * * * * * *
84751 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGAATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * * * *
84814 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATT-TTCCTCTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
** * *** *
84878 AATAAGACAAACATGAGTACACGTACGAATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
** * * * * * * *
84910 ATATTCTTTTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * * *
84975 TTGGTTTCGTAAGAAAAGC-TTTTTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGCCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TTTTTGATTGAATCAAAGTTCGTACCTTAAA
* *** * *** *
85038 TGAGACAAACAAGGGTTC-TAGTAATAATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
** * * * * * * * * * *
85068 TAATTCATTTTTATGATTGGGCACTATAAACATATTCTCCTC-TTTAGGATAAATGATATTGATG
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTT-GGATACACGATATTGAAG
* ** * * * *** * * *
85132 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCTTTAAATCAAAGTTCATACTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCTTA
* * * * * *
85196 AATAAGACAAGCATCGACT-CTCATAACAG-TCT
127 AATAAGACAAACAAC-AATACTTAT-ACGGATCC
*** * * * * * *
85228 CCATTCTTTTGTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCTA-GACATTGAT
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATAC-ACGATATTGAA
* ** * * * *
85290 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTGTT
63 GCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTT
*
85354 AAATAAGACAAACAAGAATACTTATACGGATCC
126 AAATAAGACAAACAACAATACTTATACGGATCC
* ** ** * *
85387 CTATTCTTTTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGC
1 CCATTCTTTTCAAGATTT-GGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGC
** * * * * * *
85451 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAATCAAAGTTCGTACCTTAAA
* * * ** *
85515 TGAGACAAACATCAAT-TTTAGTAATGATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
* * ** * * * *
85545 TCATACATTTT-GTGATTAGGCACTATAAACACATTC-TC-CGATTTAGGATAAACGATATTGAT
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTC-ATTT-GGATACACGATATTGA-
* ** * * *** * *
85607 A-ATTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCTTTAAATCAAAGTTCATACCT
62 AGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCT
* * * * * * *
85670 TCAATAGGACAAGCATCAATTCTCGTA-ACAG-TCT
125 TAAATAAGACAAACAACAATACT--TATACGGATCC
* * * ** * * *
85704 CCATTCTTTCCAGGATTGGGAAGCCA-AAACACATT-TTCTTCATCAGGATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * *
85767 CTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-CTTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
*
85831 AATAAGACAAACAAGAATACTTATACGGATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
* * * *
85863 CCATTCTTTTCAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * *
85928 TTGGTTTTGCAAGAAACGCATTTTTTCTACCAATTTTTG--TAAAGTCTAAGTTCGTACCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAA-TCAAAGTTCGTACCTTAAA
*
85991 TGAGACAAACA
129 TAAGACAAACA
86002 TGGGTTCTAG
Statistics
Matches: 798, Mismatches: 238, Indels: 113
0.69 0.21 0.10
Matches are distributed among these distances:
156 1 0.00
157 17 0.02
158 198 0.25
159 510 0.64
160 61 0.08
161 8 0.01
162 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
TTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTTTGATTGAATCAAAGTTCGTACCTTAAATA
AGACAAACAACAATACTTATACGGATCC
Found at i:89661 original size:159 final size:158
Alignment explanation
Indices: 88472--89722 Score: 490
Period size: 159 Copynumber: 7.9 Consensus size: 158
88462 GTAATAGTCT
* * * * * * *
88472 CCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGAATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * * * *
88535 CTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCTCCGTTTTTGATAGAATCAAAATT-TTCCTCTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
** * *** *
88599 AATAAGACAAACATGAGTACACGTACGAATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
** * * * * * * *
88631 ATATTCTTTTTAAGATTGGGCACCATAAACATAGTCTTCTGATTTGGATAAACGATATTGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * * *
88696 TTGGTTTCGTAAGAAAAGC-TTTTTTCTCACCAGTTTTT-TTTCAATCTAAGTTCGTGCCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTC-CACCA-TTTTTGATTGAATCAAAGTTCGTACCTTAAA
* *** * *** *
88759 TGAGACAAACAAGGGTTC-TAGTAATAATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
** * * * * * * * * * *
88789 TAATTCATTTTTATGATTAGGCACTATAAACATATTCTCCTC-TTTAGGATAAATGATATTGATG
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTT-GGATACACGATATTGAAG
* ** * * * *** * * *
88853 ATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CAATTTTCCTTTAAATCAAAGTTCATACTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCTTA
* * * * * *
88917 AATAAGACAAGCATCGACT-CTCATAACAG-TCT
127 AATAAGACAAACAAC-AATACTTAT-ACGGATCC
*** * * * * * *
88949 CCATTCTTTTGTTGATTGGGAAGCCA-AAACACATTC-CCTTCATTAGGATGCTA-GACATTGAT
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATAC-ACGATATTGAA
* ** * * * *
89011 GCTTTGGTGTCACAAGAAAAGCTTTTCTTTCCACTATTTTTGATAGAATCAAAGTTTGT-CTGTT
63 GCTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTT
*
89075 AAATAAGACAAACAAGAATACTTATACGGATCC
126 AAATAAGACAAACAACAATACTTATACGGATCC
* ** ** * *
89108 CTATTCTTTTCAAG-TTTGGGAATAATAAACTTAGTCTTCTCATTTGGATACACGATATTAAAGC
1 CCATTCTTTTCAAGATTT-GGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGC
** * * * * * *
89172 TTTGGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTG-TTGAGTCTAAGTTCGTGCCTCAAA
65 TTTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAATCAAAGTTCGTACCTTAAA
* * * ** *
89236 TGAGACAAACATCAAT-TTTAGTAATGATCT
129 TAAGACAAACAACAATACTTA-TACGGATCC
* * ** * * * *
89266 TCATACATTTT-GTGATTAGGCACTATAAACACATTC-TC-CGATTTAGGATAAACGATATTGAT
1 CCATTC-TTTTCAAGATTTGGAACCATAAACACATTCTTCTC-ATTT-GGATACACGATATTGA-
* ** * * *** * *
89328 A-ATTTTCTTTTGCATGAAAATCTTTTATTTGCC-CCATTTTCCTTTAAATCAAAGTTCATACCT
62 AGCTTTGGTTTTGCAAGAAAAGCTTTT-TTT-CCACCATTTTTGATTGAATCAAAGTTCGTACCT
* * * * * * *
89391 TCAATAGGACAAGCATCAATTCTCGTA-ACAG-TCT
125 TAAATAAGACAAACAACAATACT--TATACGGATCC
* * * ** * * *
89425 CCATTCTTTCCAGGATTGGGAAGCCA-AAACACATT-TTCTTCATCAGGATACAAGACATTGATG
1 CCATTCTTTTCAAGATTTGGAA-CCATAAACACATTCTTC-TCATTTGGATACACGATATTGAAG
* * * * * *
89488 CTTTGGTGTGGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATGGAATCAAAATTTGT-CTTTTA
64 CTTTGGTTTTGCAAGAAAAGCTTTT-TTTCCACCATTTTTGATTGAATCAAAGTTCGTAC-CTTA
*
89552 AATAAGACAAACAAGAATACTTATACGGATCC
127 AATAAGACAAACAACAATACTTATACGGATCC
* * * *
89584 CCATTCTTTTCAAGATTTGGCACCATAAACATATTCTTCTCATGTGGATACACGATAATGAAGCT
1 CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
* * * * * *
89649 TTGGTTTTGCAAGAAACGCATTTTTTCTACCAATTTTTG--TAAAGTCTAAGTTCGTACCTCAAA
66 TTGGTTTTGCAAGAAAAGCTTTTTTTCCACC-ATTTTTGATTGAA-TCAAAGTTCGTACCTTAAA
*
89712 TGAGACAAACA
129 TAAGACAAACA
89723 TGGGTTCTAG
Statistics
Matches: 796, Mismatches: 240, Indels: 113
0.69 0.21 0.10
Matches are distributed among these distances:
156 1 0.00
157 17 0.02
158 198 0.25
159 508 0.64
160 61 0.08
161 8 0.01
162 3 0.00
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.36
Consensus pattern (158 bp):
CCATTCTTTTCAAGATTTGGAACCATAAACACATTCTTCTCATTTGGATACACGATATTGAAGCT
TTGGTTTTGCAAGAAAAGCTTTTTTTCCACCATTTTTGATTGAATCAAAGTTCGTACCTTAAATA
AGACAAACAACAATACTTATACGGATCC
Found at i:97021 original size:158 final size:158
Alignment explanation
Indices: 93999--97111 Score: 898
Period size: 159 Copynumber: 19.7 Consensus size: 158
93989 CTCATAACAG
* * * * *
93999 TCTCCATTCTTTTCAAGACTGAGAAGCCA-AAACACAATTC-CTTCATTAGGATGCATGACATTG
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACAC-ATTCTCTTCATTAGGATACAAGATATTG
* *
94062 ATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-CTC
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTACT-
* * *
94126 TAAAATAAGACAAACAAGAATACTTATACGGA
127 TTAAATAAGACAAACATGAATACGTATACGGA
* * ** * * * *
94158 TCCCCATTCTTTTCAAGTTTGGGAACCATAAACTTAGTTTTC-TCATTTGGATACAGGATATTAA
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACA-TTCTCTTCATTAGGATACAAGATATTGA
* * * * * * * * * *
94222 AGCTTTGGT-TTCACAAGAAATGC-TTT-TTTCTCACCAATTTTTGTTGAGTCTAAGTTCGTGCC
65 TGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTC-CACC-ATTTTTGATAAATCAAAGTTTGTACT
* * * ** * **
94284 TCAAATGAGTCAAACATGGGTTC-TAGTAATGA
127 TTAAATAAGACAAACATGAATACGTA-TACGGA
* ** * * * * * * * *
94316 TCTTCATTCATTTT-GTGATTAGGCACTATAAACACATTCTCCTCTTTAAGACA-AATGATATGG
1 TCTCCATTC-TTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAA-GATATTG
* * ** * * * * * * * * ** *
94379 GTGATTTTCTTTTTCATGGAAACCTTCTCTTTGCC-CTATTTTCCT-TTAAATCAAAGTTCATTC
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAAATCAAAGTTTGTAC
* * * * * *
94442 CTTAAATAAGATAAGCATCGATTCTCGTA-ACAG-
126 TTTAAATAAGACAAACAT-GAAT-ACGTATACGGA
** * * * * * * *
94475 TCTCCATTCTTTTCTTGATTTGGAAGCCA-AAATACATTCCCTTTATTAGGATACATGACATTAA
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACATTCTCTTCATTAGGATACAAGATATTGA
* * * * * *
94539 TGTTTTGGTGTTGCAAGAAAAACTTTACTTTCCACCATTTCTGATAGAAACAAAGTTT-TTCTCT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTACT-T
* * * **
94603 CAAACAAGACAAACTTGAATAC-TCATACTAA
128 TAAATAAGACAAACATGAATACGT-ATACGGA
* * * ** * * * * **
94634 TCCCCATTATTTTCAAGATTTGCCACCATAAACAAAGTCT-TCTCATTAGGGTACATGATACGGA
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCT-TCATTAGGATACAAGATATTGA
* * * * * * * ** *
94698 TGCTTTGATTTTGCAAGAAATGCGTTT-TTCCCACCAATTTTT-ATGAAGTCTAAGTTCATACCT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGAT-AAATCAAAGTTTGTACTT
* * * * ** * * **
94761 CAAATGACATAAACATGGGTTC-TAGCAATGA
128 TAAATAAGACAAACATGAATACGTA-TACGGA
* ** ** * * ** * *
94792 TCTTCATTCATTTT-GGGATTATGAACTACAAATGCATTTTCTACATTAGGATA-AATGATATTG
1 TCTCCATTC-TTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAA-GATATTG
* ** * * * * * ** *
94855 ATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-CTATTTTCCT-TTAAATCAAAGTTCATTC
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAAATCAAAGTTTGTAC
** * * *
94918 TTTAAATAAGACAGGCACTGATTCTCGTA-ACAG-
126 TTTAAATAAGACAAACA-TGAAT-ACGTATACGGA
* *
94951 TCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACATTC-CATTCATTAGGATACAAGACATTG
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACATTCTC-TTCATTAGGATACAAGATATTG
** * *
95014 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACTGTGTTTGATAGAATCAAAGTTTAT-C-T
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTACTT
* *
95077 TAAATAAGAAAAACATG---A-GTGTACGGA
128 TAAATAAGACAAACATGAATACGTATACGGA
* * * * * * * *
95104 TCCCCATTATTTTCAAGATTGCGCATCATAAACATAGTCT-TCTCATTTGGATA-AACGATATTG
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCT-TCATTAGGATACAA-GATATTG
* * * * * * * * * * ** *
95167 AAG-TTT-TTGCTTCACAAGAAAGGCTTTT-TTCCCACCAGTTTTGGTTGAGTCTAAGTTCATGC
64 ATGCTTTGGTG-TT-GCAAGAAAAGCTTTTCTTTCCACCA-TTTTTGATAAATCAAAGTTTGTAC
* * * * * ***
95229 CTCAAATGAGACAAACATGGATTC-TAGTAATAA
126 TTTAAATAAGACAAACATGAATACGTA-TACGGA
* * * ** * * * * * *
95262 TCTTCTTTCAATTT-GTGATTAGGAACTACAAACGCATTTTCCTCATTAGGATA-AATGATATTG
1 TCTCCATTC-TTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAA-GATATTG
* ** * * * * * * ** *
95325 ATGATTTTCTTTTGCATGGAAATCTTTTCTTTACC-CTATTTTCCT-TTAAATCAAAGTTCATTC
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTT-CCACCATTTT--TGATAAATCAAAGTTTGTAC
* * * * *
95388 CTTAAATAAGACAAGCCTTG-ATTC-TCATAAC-AA
126 TTTAAATAAGACAA-ACATGAATACGT-AT-ACGGA
* * * * *
95421 TCTCAATTCTTTTCAAGATTAGGAAACCA-AAACAAATTCCCATCATTAGGATACAAGATATTGA
1 TCTCCATTCTTTTCAAGATT-GGGAACCATAAACACATTCTCTTCATTAGGATACAAGATATTGA
* ** * * * *
95485 TGCTTTTGTGTCACAAGAAAAGCTTTTCTTTCTACCGTTTTTGATAGAATCAAAATTTG-CCTTT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTAC-TT
* * * *
95549 TAAATAAGACAAATAAGAATACGTGTATGGA
128 TAAATAAGACAAACATGAATACGTATACGGA
* * * * * * *
95580 TC-CACATTCCTTTCAAGATTGGGCACCGTAAACATAGTCT-TCTGATTTGGATA-AACGATATT
1 TCTC-CATTCTTTTCAAGATTGGGAACCATAAACACATTCTCT-TCATTAGGATACAA-GATATT
* * * * * * * *
95642 GAAGCTTTGGT-TTCGCAAGAAAAGCTTTT-TTCCCACCAATTTTT-TTGAGTCTAAGTTCGTGC
63 GATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAATCAAAGTTTGTAC
* * ** ** * ***
95704 CTCAAATGTGACAAACATGGGTTC-TAGTAATAA
126 TTTAAATAAGACAAACATGAATACGTA-TACGGA
*** * * * * *
95737 TCTCCATTCATTTTTGTGATTCGGCACTATAAACACATTCTCCTCTTTAGGATA-AAGGATATTG
1 TCTCCATTC-TTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAA-GATATTG
** ** * * * * * ** **
95801 ATAATTTTCTTTTGCATCG-AAATCTTTTATTTGCC-CAATTTTTCTTTAAATCAAAGTTCATAC
64 ATGCTTTGGTGTTGCA-AGAAAAGCTTTTCTTT-CCACCATTTTT-GATAAATCAAAGTTTGTAC
* * * *
95864 CTTAAATAAGACAAGCATCG-ATTC-TCATAACAG-
126 TTTAAATAAGACAAACAT-GAATACGT-AT-ACGGA
* **
95897 TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTGGGATACAAGGCATTGA
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACATTCTCTTCATTAGGATACAAGATATTGA
* ** * * * *
95961 TGATTTGGTGTCACAAGACAGGCTTTTCTTTCCTCCATTTTTGATGGAATCAAAGTTTGT-CTCT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT-AAATCAAAGTTTGTACT-T
* *
96025 TAAATAAGACAAACACGAATACCTATACGGA
128 TAAATAAGACAAACATGAATACGTATACGGA
* * * * *
96056 TCCCCATTCTTTTCAAGATTGGGCACCATAAACATAGTCT-TCTCATGT-GGATACACGATATTG
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCT-TCAT-TAGGATACAAGATATTG
* * * * * * *
96119 AAGCTTTGGTTTTGCAAGAAAAGCATTT-TTCCCACCAATTTTTG-TAAAGTCTAAGTTCGTACC
64 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAA-TCAAAGTTTGTACT
* ** ** * **
96182 TCAAACGAGACAAACATGGGTTC-TAGTAATGA
127 TTAAATAAGACAAACATGAATACGTA-TACGGA
* ** * ** * * *
96214 TCTTCATTCATTTT-GGGATTAGGAAGTACAAACACATTCTCCTCATTACGATA-AATGATATTG
1 TCTCCATTC-TTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAA-GATATTG
* ** * * * * * *
96277 ATGATTTTCTTTTGCATAG-AAATCTTTTCTTTGCC-CTATTTTCCT-TTAAATCAAAGTTTATT
64 ATGCTTTGGTGTTGCA-AGAAAAGCTTTTCTTT-CCACCATTTT--TGATAAATCAAAGTTTGTA
* * * *
96339 CCTTAAATAAGACAAGCATCG-ATTC-TCATAACAG-
125 CTTTAAATAAGACAAACAT-GAATACGT-AT-ACGGA
* * * * *
96373 TCTCCATTCTTTTCAAGATTTGGAAGCCA-ATACACATTCCCATCATTAGGATACAAGAAATTGA
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACATTCTCTTCATTAGGATACAAGATATTGA
** * * * *
96437 TGCTTTGGTGCCGCAAGAAAAGCTTTTCTTTCCACCGTTGTTGATAAAACCAAAGTTTGTCCTTT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGAT-AAATCAAAGTTTGTACTTT
* * *
96502 AAAAAAGAAAAACATGAATACGTGTACGGA
129 AAATAAGACAAACATGAATACGTATACGGA
* * * * ** * *
96532 TCCCCATTCTTTTCAAGATTAGGCACCA-GAAC-CATAGTCTTCGCATTTGGATACATGATATTG
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCTT--CATTAGGATACAAGATATTG
* * * * * * * * * * * *
96595 AAGCTTTGGT-TTCACAAGAAAGGC-TTT-TTCCCCCCAATTTTTGTTGAGTCTAAGTTCGTGCC
64 ATGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATAAATCAAAGTTTGTACT
* * ** * *
96657 TCAAATGAGACAAACATGGGTTCCAGTA-A-TGA
127 TTAAATAAGACAAACAT-GAATAC-GTATACGGA
* ** * * * * *
96689 TCTTCATTCATTTT-GTGATT-AGACACTATAAACACATTCTCCTCTTTAGGATA-AATGATACT
1 TCTCCATTC-TTTTCAAGATTGGGA-ACCATAAACACATTCTCTTCATTAGGATACAA-GATATT
* ** * * * * * * * * **
96751 GATGGTTTTCTTTTGCATGGAAA-TTTTTCCATTGCC-CTATTTTCT-TTAAATGAAAGTTCATA
63 GATGCTTTGGTGTTGCAAGAAAAGCTTTT-C-TTTCCACCATTTT-TGATAAATCAAAGTTTGTA
* * * * *
96813 CTTTAAATAAGACAAGCATCGATTCTCGT-GACAG-
125 CTTTAAATAAGACAAACAT-GAAT-ACGTATACGGA
*
96847 TCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACAAGACATTGA
1 TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACATTCTCTTCATTAGGATACAAGATATTGA
* *
96911 TGCTTTGGTGTTGCAAGAAAAGATTTTCTTTCCACCGTTTTTGATAGAATCAAAGTTTGT-CTTT
65 TGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATA-AATCAAAGTTTGTACTTT
96975 AAATAAGACAAACATGAATACGTATACGGA
129 AAATAAGACAAACATGAATACGTATACGGA
* * * * * * *
97005 TCCCCATTCTTCTCAAGATTGGGCACCATAAACATAGTCT-TCTCATTTGGATACACGATATTGA
1 TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCT-TCATTAGGATACAAGATATTGA
* * * * *
97069 AGCTTTGAT-TTAGTAAGAAAAGCATTT-TTCCCACCAATTTTTG
65 TGCTTTGGTGTT-GCAAGAAAAGCTTTTCTTTCCACC-ATTTTTG
97112 CAAAGCCTAA
Statistics
Matches: 2104, Mismatches: 667, Indels: 367
0.67 0.21 0.12
Matches are distributed among these distances:
151 4 0.00
152 29 0.01
153 65 0.03
154 15 0.01
156 9 0.00
157 178 0.08
158 706 0.34
159 976 0.46
160 110 0.05
161 8 0.00
162 4 0.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
TCTCCATTCTTTTCAAGATTGGGAACCATAAACACATTCTCTTCATTAGGATACAAGATATTGAT
GCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAAATCAAAGTTTGTACTTTAA
ATAAGACAAACATGAATACGTATACGGA
Found at i:100922 original size:159 final size:156
Alignment explanation
Indices: 100610--101435 Score: 487
Period size: 159 Copynumber: 5.2 Consensus size: 156
100600 TTTCCTTTAT
* * * * * * * *
100610 ATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTTATAACAG-TCTCCATTCGTTTCTAG
1 ATCAAAGTTCATACCTTAAATAAGACAAACATGAATACTCAT-ACTGATCCCCATTCTTTTCAAG
* * * * * *
100674 ATTGGGAAGCCA-AAACACATTCCCTTCATTAAGATACAA-GACATTGATGCCTTGGTGTT-GCA
65 ATTGGGCA-CCATAAACATATT-TC-TCATTAGGATA-AATGATATTGATGCTTTGGT-TTCGCA
* *
100736 AGAAAAGCTTTTCTTCCCACCGTTTTTGATAGA
125 AGAAAAGCTTTT-TTCCCACCATTTTTGTTAGA
* * *
100769 ATCAAACTTTAT-CTCTTAAATACGACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAG
1 ATCAAAGTTCATAC-CTTAAATAAGACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAG
* *
100833 ATTGGGCACCATAAACATAGTATTCTCCTTAGGATAAATGATATTGATGCTTTGGTTTCGCACGA
65 ATTGGGCACCATAAACATA-T-TTCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGA
* *
100898 AAGGCTTTTTTCCCACCAACTTTTG-T-GA
128 AAAGCTTTTTTCCCACC-ATTTTTGTTAGA
* ** * * * * * ** **
100926 AGTCTAAGTTCATACCTTAAATGGGACAAACTTGGATTCTAATAATGATCTTCATTCATTTT-GT
1 A-TCAAAGTTCATACCTTAAATAAGACAAACATGAATACTCATACTGATCCCCATTC-TTTTCAA
* ** * * * ** * *
100990 GATTAGGCATTATAAACACTTTTTCCTCCTTAGGATAAATGATATTGATGATTTTCTTTTGCATG
64 GATTGGGCACCATAAACA-TATTT-CTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG
* * * * *
101055 AAAATCTTTTTTTCGCTCTATTTTTCTTTA-A
127 AAAAGC-TTTTTTCCCACCATTTTT-GTTAGA
* * * * * * *
101086 ATCAAAGTTCATACCTTAAATAAGACAAGCATCG-ATTCTCGTGACAG-TCTCTATTCTTTTGAA
1 ATCAAAGTTCATACCTTAAATAAGACAAACAT-GAATACTCAT-ACTGATCCCCATTCTTTTCAA
* * * * * * ** *
101149 CATTGGGAAGCCA-AAACACATTCCCTTTATTAGGATACAA-GACATTGATGCTTTGGGGTCGTA
64 GATTGGGCA-CCATAAACATATT-TC-TCATTAGGATA-AATGATATTGATGCTTTGGTTTCGCA
* * *
101212 AGAAAAGCTTTTCTTTCCATCGTTTTTGTTAGA
125 AGAAAAGCTTTT-TTCCCACCATTTTTGTTAGA
* * * * * *
101245 ATCAAAGTTTC-T-CTCTTAAATAAGACAAACCTTAATACTCATACTAATCCCGACTCTTTTCAT
1 ATCAAAG-TTCATAC-CTTAAATAAGACAAACATGAATACTCATACTGATCCCCATTCTTTTCAA
* * * * *
101308 GATTTGGCACCATAAACATAGTCTTATCATTAGGATACACGATATTGATGCTTTGGTTTCACAAG
64 GATTGGGCACCATAAACATA-T-TTCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAG
* * * *
101373 AAAGGCTTTCTTCCCACCAATTATTG-TAAA
127 AAAAGCTTTTTTCCCACC-ATTTTTGTTAGA
* * * *
101403 ATCTAAGTTCATGCCTCAAATGAGACAAACATG
1 ATCAAAGTTCATACCTTAAATAAGACAAACATG
101436 GATTCTAGTA
Statistics
Matches: 501, Mismatches: 129, Indels: 75
0.71 0.18 0.11
Matches are distributed among these distances:
157 8 0.02
158 173 0.35
159 303 0.60
160 15 0.03
161 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.14, T:0.35
Consensus pattern (156 bp):
ATCAAAGTTCATACCTTAAATAAGACAAACATGAATACTCATACTGATCCCCATTCTTTTCAAGA
TTGGGCACCATAAACATATTTCTCATTAGGATAAATGATATTGATGCTTTGGTTTCGCAAGAAAA
GCTTTTTTCCCACCATTTTTGTTAGA
Found at i:102972 original size:207 final size:207
Alignment explanation
Indices: 102582--102990 Score: 570
Period size: 207 Copynumber: 2.0 Consensus size: 207
102572 TTCTTTTCAA
* * *
102582 GATTGGGCACCATAAACATAGTTTTCTCATTTGGATACACGATATTGAAACTTGAGTTTCACAAG
1 GATTGGGCACCATAAACATAGTCTTCGCATTTGGATACACGATATTGAAACTTGAGTTTCACAAC
* * * * *
102647 AAAGGCTTTTTTCCCACCAATTTTTTTTGAGTCTAGGTTCTTGCCTCAAGTGAGACAAACATGGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
* **
102712 TTCTAGTAATAATCTTCACTCATTTTGCTATTAGGAACTGCAAACGTATTCTCCTCATTAAGATA
131 TTCTAGTAATAATCTTCACTCATTTTGCTATTAGGAACTACAAACACATTCTCCTCATTAAGATA
102777 AATGATATTGAT
196 AATGATATTGAT
* * * *
102789 GATTGGGCACCATAAACATAGTCTTCGCATTTTGATAGACGATATTGAAGCTTTG-GTTTCGCAA
1 GATTGGGCACCATAAACATAGTCTTCGCATTTGGATACACGATATTGAAAC-TTGAGTTTCACAA
102853 CAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGG
65 CAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGG
* ** * * * * **
102918 GTTCTAGTAATGATCTTCGTTCGTTTTG-TGATTAGGTACTATAAACACATTCTCCTCTTTTGGA
130 GTTCTAGTAATAATCTTCACTCATTTTGCT-ATTAGGAACTACAAACACATTCTCCTCATTAAGA
102982 TAAATGATA
194 TAAATGATA
102991 CTGGATATTC
Statistics
Matches: 176, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
206 1 0.01
207 172 0.98
208 3 0.02
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.36
Consensus pattern (207 bp):
GATTGGGCACCATAAACATAGTCTTCGCATTTGGATACACGATATTGAAACTTGAGTTTCACAAC
AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
TTCTAGTAATAATCTTCACTCATTTTGCTATTAGGAACTACAAACACATTCTCCTCATTAAGATA
AATGATATTGAT
Found at i:103417 original size:680 final size:681
Alignment explanation
Indices: 102106--103471 Score: 1940
Period size: 680 Copynumber: 2.0 Consensus size: 681
102096 TTCTTTTCAA
* * * * * * *
102106 GATTGGGCGCCATAAACATAGTCTTCTCGTTAGGATACATGATATTGATGCTTTGATTTTGCAAG
1 GATTGGGCACCATAAACATAGTCTTCGCATTAGGATACACGATATTGAAGCTTTGATTTCGCAAC
* *
102171 AAATGCGTTTTTCCCACCAATTTTTATAAAGTCTAACTTCGTACCTCAAATGAGACAAACATGGG
66 AAAGGCGTTTTTCCCACCAATTTTTATAAAGTATAACTTCGTACCTCAAATGAGACAAACATGGG
* * *
102236 TTCTAGGAATGATCTTTATTCATTTTGGGATTAGGAGCTACAAACGCATGCTCCTTATTCGGTTA
131 TTCTAGGAATGATCTTCATTCATTTTGGGATTAGGAGCTACAAACACATGCTCCTTATTCGGATA
* * * *
102301 AATGATATTGATGATTTTCTTTTACGTGAAAATCTTTTCTTTGCCCTACTTTCCTTCAAATCAAA
196 AATGATACTGA-GATATTCTTTTACATGAAAACCTTTTCTTTGCCCTACTTTCCTTCAAATCAAA
** * *
102366 GTTCATTCCTTAAATAAGATGAGCATCGATTCTCATAACAGTTTCCATTCTTTTCAAGATGAGGA
260 GTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATGAGGA
*
102431 AGCCAAAACACATTCCCTTCATTAGGATGCAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTT
325 AGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTT
* * *
102496 TTCTTTCCACCGCTTTTGATCAAACCAAAGTTTATCTTTTAAATAAGACAAACATGAATACGTGT
390 TTCTTTCAACCACTTTTGATCAAACCAAAGTTTATCTCTTAAATAAGACAAACATGAATACGTGT
*
102561 ACGGATCCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTTTTCTCATTTGGATACACGATA
455 ACGGATCCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTTTTCTCATTTGGATAAACGATA
* * * * *
102626 TTGAAACTTGAGTTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTTTTGAGTCTAGGTTCTTGC
520 TTGAAACTTGAGCTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCATCC
*
102691 CTCAAGTGAGACAAACATGGGTTCTAGTAATAATCTTCACTCATTTTGCT-ATTAGGAACTGCAA
585 CTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCACTCATTTTG-TGATTAGGAACT-CAA
*
102755 ACGTATTCTCCTCATTAAGATAAATGATATTGAT
648 ACGCATTCTCCTCATTAAGATAAATGATATTGAT
** * *
102789 GATTGGGCACCATAAACATAGTCTTCGCATTTTGATAGACGATATTGAAGCTTTGGTTTCGCAAC
1 GATTGGGCACCATAAACATAGTCTTCGCATTAGGATACACGATATTGAAGCTTTGATTTCGCAAC
* * ** * *
102854 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
66 AAAGGCGTTTTTCCCACCAATTTTTATAAAGTATAACTTCGTACCTCAAATGAGACAAACATGGG
* * * * * * *
102919 TTCTAGTAATGATCTTCGTTCGTTTTGTGATTAGGTA-CTATAAACACATTCTCCTCT-TTTGGA
131 TTCTAGGAATGATCTTCATTCATTTTGGGATTAGG-AGCTACAAACACATGCTCCT-TATTCGGA
* * *
102982 TAAATGATACTG-GATATTCTTTTGCATGGAAACCTTTTCTTTGCCCTATTTTACCTT-AAATCA
194 TAAATGATACTGAGATATTCTTTTACATGAAAACCTTTTCTTTGCCCTACTTT-CCTTCAAATCA
* * *
103045 AAGTTCATTCCTTACATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCTTTTCAAGAT-TG
258 AAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATGAG
* *
103109 GAAGCCAAAACGCATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGT
323 GAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGC
* * * * *
103174 TTTTCTTTTAACCATTTTTGAT-AGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAATACG
388 TTTTCTTTCAACCACTTTTGATCA-AACCAAAGTTTATCTCTTAAATAAGACAAACATGAATACG
*
103238 TGTACGGATGCC-CATTCTTTTCAAGATTGGGCATCATAAACATAGTTTTCTCATTTGGATAAAC
452 TGTACGGAT-CCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTTTTCTCATTTGGATAAAC
** * * *
103302 GATATTGAAGTTTTG-GCTTCGCAAGAAAGGCTTTTTTCCCAGCAGTTTTTGTTGAGTCTAAGTT
516 GATATTGAA-ACTTGAGCTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTT
**
103366 CATCCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCTTTCATTTTGTGATTAGGAACT
580 CATCCCTCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCACTCATTTTGTGATTAGGAACT
* *
103431 CAAATGCATTCTCCTCATTAGGATAAATGATATTGAT
645 CAAACGCATTCTCCTCATTAAGATAAATGATATTGAT
103468 GATT
1 GATT
103472 TTCTTTTGCA
Statistics
Matches: 604, Mismatches: 72, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
679 40 0.07
680 286 0.47
681 101 0.17
682 4 0.01
683 171 0.28
684 2 0.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.36
Consensus pattern (681 bp):
GATTGGGCACCATAAACATAGTCTTCGCATTAGGATACACGATATTGAAGCTTTGATTTCGCAAC
AAAGGCGTTTTTCCCACCAATTTTTATAAAGTATAACTTCGTACCTCAAATGAGACAAACATGGG
TTCTAGGAATGATCTTCATTCATTTTGGGATTAGGAGCTACAAACACATGCTCCTTATTCGGATA
AATGATACTGAGATATTCTTTTACATGAAAACCTTTTCTTTGCCCTACTTTCCTTCAAATCAAAG
TTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATGAGGAA
GCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTT
TCTTTCAACCACTTTTGATCAAACCAAAGTTTATCTCTTAAATAAGACAAACATGAATACGTGTA
CGGATCCTCATTCTTTTCAAGATTGGGCACCATAAACATAGTTTTCTCATTTGGATAAACGATAT
TGAAACTTGAGCTTCACAAGAAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCATCCC
TCAAATGAGACAAACATGGGTTCTAGTAATAATCTTCACTCATTTTGTGATTAGGAACTCAAACG
CATTCTCCTCATTAAGATAAATGATATTGAT
Found at i:103696 original size:475 final size:476
Alignment explanation
Indices: 102789--105856 Score: 3660
Period size: 475 Copynumber: 6.4 Consensus size: 476
102779 TGATATTGAT
* * * * *
102789 GATTGGGCACCATAAACATAGTCTTCGCATTTTGATAGACGATATTGAAGCTTTGGTTTCGCAAC
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
*
102854 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * * * *
102919 TTCTAGTAATGATCTTCGTTCGTTTTGTGATTAGGTACTATAAACACATTCTCCTCTTTTGGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
* * *
102984 AATGATACTG--GATATTCTTTTGCATGGAAACCTTTTCTTTGCCCTATTTTACC-TTAAATCAA
196 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTT-CCTTTAAATCAA
* * *
103046 AGTTCATTCCTTACATAAGACAAGCATCGATTCTCGTAACAGTCTCAATTCTTTTCAAGATT-GG
260 AGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* * *
103110 AAGCCAAAACGCATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGTT
325 AAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
** * * *
103175 TTTCTTTTAACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGAGAAACATGAATACGTG
390 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATA
*
103240 TACGGATGCCCATTCTTTTCAA
455 TACGGATCCCCATTCTTTTCAA
* * * * * *
103262 GATTGGGCATCATAAACATAGTTTTCTCATTTGGATAAACGATATTGAAGTTTTGGCTTCGCAAG
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
* * * *
103327 AAAGGCTTTTTTCCCAGCAGTTTTTGTTGAGTCTAAGTTCATCCCTCAAATGAGACAAACATGGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * ** *
103392 TTCTAGTAATAATCTTCTTTCATTTTGTGATTAGGAACT-CAAATGCATTCTCCTCATTAGGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
* *
103456 AATGATATTGATGATTTTCTTTTGCATTGAAATCTTTTCTTTTGCCCTATTTTCCTTTAAATTAA
196 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTC-TTTGCCCTATTTTCCTTTAAATCAA
* * * *
103521 AGTTCATTTCTTAAATAAGACAAGCATGGATTCTCATAATAGTC-CCAATTCTTTTCATGATTGG
260 AGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCC-ATTCTTTTCAAGATTGG
* * * *
103585 GAAGCCAAAACAAAAT-CCTTGATTAGGATACAAGACATTGATGCTTTTGTG-CTGCAAGAAAAG
324 GAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTC-GCAAGAAAAG
* * *
103648 CTTTTCATTT-CACCGTTTTTGATAGAATCAAAATTTGCCTCTTAAATAAGACAAACATGAATAC
388 CTTTTC-TTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATAC
* *
103712 ATGTACGGATCCACATTCTTTTCAA
452 ATATACGGATCCCCATTCTTTTCAA
* *
103737 GATTGGGCACCATAAACATAGTCTTCTAATTTGGATAAACGATATTGAAGCTTTGGTTTTGCAAG
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
* * * *
103802 AAAAGCTTTTTTCCCA-C-ATGTTTTTTTGAGTCTAACTTCATGCCTCAAATGAGACAAACATGG
66 AAAGGCTTTTTTCCCACCAAT-TTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * * **
103865 GTTCTAGTCATAATCTTCATTCATTTTTGTGATTAGGCACTACAAACATATTCTATTCTTTAGGA
130 GTTCTAGTAATGATCTTCATTCA-TTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGA
* *
103930 TAAATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCCCTATTTTCTTTTAAATCA
194 TAAATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCA
* * ** * *
103995 AAGTTCATACCTTAAATAAGACGAGCATCGATTCTCGCAACAATCTCCATTCTTTTC-TGATTGG
259 AAGTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGG
*
104059 GAAACCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC
324 GAAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGC
* * * * *
104124 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTTTCTCAAATATGACAAACAAGAATACTT
389 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACAT
* *
104189 ATACAGACCCCCATTCTTTTCAA
454 ATACGGATCCCCATTCTTTTCAA
* * *
104212 GTTTGGGCACCATAAACGTAGTCTTCTCACTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
* * *
104277 AAAGGTTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATAAGACAAACATTGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * *
104342 TTTTAGTACTGA---TC-TTC--------A-T----A-T--------ATTCTCCTCTTTATGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
* ** *
104381 AATGATATTGATAATTTTCTTTTGCATCAAAATCTTTTATTTGCCCTATTTTCCTTTAAATCAAA
196 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAA
*
104446 GTTCATAT-CTTAAATAAGACAAGCATCGATTCTCATAACAATCTCCATTCTTTTCAAGATTGGG
261 GTTCAT-TCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGG
* *
104510 AAGCCAAAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTTGTTGTCGCAAGAAAAGCT
325 AAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCT
* * * * *
104575 TTTCTTTCCACCATTTTTTATGGAATCAAAGTTTATCTCTTAAATAAG--AAACAAGAATACTTA
390 TTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATA
* *
104638 TCCGGATCCCCATTCTTTTCAT
455 TACGGATCCCCATTCTTTTCAA
* * ** *
104660 GATTGGGCACCATAGACATAGTCTTGTCACATGGGTACACGATATTGAAGCTTTGGTTTTGCAAG
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
* * * ** *
104725 AAATGCATTTTTCCCACCAATTTTCGTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * * *
104790 TTCTAGTAATGATCTTCATTCATTTTGGGATTAGGAACTACAAACGCATTCTCCTCGTTAAGATA
131 TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
* * *
104855 AATGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGCCCTATTTTCCTTTAATTCAAA
196 AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAA
* *
104920 GTTCATTCCTTAAATAAGATAAGCATCGATTCTCATAATAGTCTCCATTCTTTTCATA-ATTGGG
261 GTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCA-AGATTGGG
* * * * * *
104984 AAGCCAATACACATTCCCATCGTTAGGATACAAGAAATTGAT-TTGTTGGTGTCGCAAGAAAAGA
325 AAGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCT-TTGGTGTCGCAAGAAAAGC
** * *
105048 TTTTCTTTCCACTGTTTTTGATAGAATCAAAGTTTGTTTCTTAAA-ATAGAAAAACATGAATACA
389 TTTTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATA-AGACAAACATGAATACA
* *
105112 TGTACGGATCCCCATTCTTTTCTA
453 TATACGGATCCCCATTCTTTTCAA
* *
105136 GATTAGGCACCATAAACATAGTCTTCTCGTTTGGATACACGATATTGAAGAGCCTAGTCTTCTCA
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATT---GA----AG------C-
*
105201 TTTGGATACACGATATTGAAGCTTTGGTTTCGCAAGAAAGGCTTTTTTCCCACCAATTTTTGTCG
52 TTT-G------G----T-----TTT------GCAAGAAAGGCTTTTTTCCCACCAATTTTTGTTG
* * * *
105266 AGTCTAAGTTCGTGCCTCAAATGAGACAAAAATGGGTTCTAGTAACGACCATCATTCATTTTGTG
95 AGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGTG
* * * *
105331 ATTA-GACACTATAAACACATTCTCCGCATTAGGATAAATGATATTGATGATTTCCTTTTGCATG
160 ATTAGGA-ACTACAAACACATTCTCCTCTTTAGGATAAATGATATTGATGATTTTCTTTTGCATG
* * *
105395 GAAATC-TTTCTTTGCCTTTTTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATTG
224 GAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCG
* * * *
105459 ATTCTCGTAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTTATTAGGAT
289 ATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCCCTTCATTAGGAT
* * * *
105524 ACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCTACTGA-TTTTGATAGAAACA
354 ACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCAC-CATTTTTGATAGAATCA
* * *
105588 ATGTTTGTCTCTTAAATAAGACAAACATGAATACGTATACGGATCCTCATTCTTTTCAA
418 AAGTTTGTCTCTTAAATAAGACAAACATGAATACATATACGGATCCCCATTCTTTTCAA
* * * * * * * *
105647 GATTGGGCACCATATACTTAGTCTTTTCATTTGGATACATGGTATTGAAGCTTTAGTTTCGAAAG
1 GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
* * * * *
105712 AAAGGATTTTTTCCCACCAATTTTTGTTGAGTCTATGTTTGTTCCTCAAAT-ACGACAAACTTGG
66 AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATGG
* ** * * * * *
105776 GTTCTTGTAATGATCTTCAAACTTTTTGTGATTAGGCACCATAAACACATTCT-CTATTTTAGGA
130 GTTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCT-CTTTAGGA
*
105840 TAAATGATACTGATGAT
194 TAAATGATATTGATGAT
105857 CTTGAAACAT
Statistics
Matches: 2231, Mismatches: 269, Indels: 188
0.83 0.10 0.07
Matches are distributed among these distances:
448 158 0.07
449 126 0.06
450 111 0.05
451 2 0.00
452 3 0.00
457 1 0.00
458 1 0.00
460 1 0.00
461 1 0.00
462 1 0.00
463 1 0.00
465 1 0.00
466 1 0.00
472 32 0.01
473 158 0.07
474 340 0.15
475 665 0.30
476 195 0.09
477 2 0.00
479 2 0.00
481 2 0.00
483 2 0.00
486 1 0.00
489 1 0.00
490 4 0.00
491 1 0.00
497 4 0.00
498 1 0.00
501 1 0.00
504 2 0.00
506 3 0.00
508 2 0.00
510 1 0.00
511 254 0.11
512 150 0.07
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (476 bp):
GATTGGGCACCATAAACATAGTCTTCTCATTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG
AAAGGCTTTTTTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGG
TTCTAGTAATGATCTTCATTCATTTTGTGATTAGGAACTACAAACACATTCTCCTCTTTAGGATA
AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAA
GTTCATTCCTTAAATAAGACAAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTGGGA
AGCCAAAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTT
TTCTTTCCACCATTTTTGATAGAATCAAAGTTTGTCTCTTAAATAAGACAAACATGAATACATAT
ACGGATCCCCATTCTTTTCAA
Found at i:105997 original size:190 final size:190
Alignment explanation
Indices: 105674--106044 Score: 532
Period size: 190 Copynumber: 2.0 Consensus size: 190
105664 TTAGTCTTTT
*
105674 CATTTGGATACATGGTATTGAAGCTTTAGTTTCGAAAGAAAGGATTTTTTCCCACCAATTTTTGT
1 CATTTGGATACATGATATTGAAGCTTTAGTTTCGAAAGAAAGGATTTTTTCCCACCAATTTTTGT
* * * * * ** **
105739 TGAGTCTATGTTTGTTCCTCAAATACGACAAACTTGGGTTCTTGTAATGATCTTCAAACTTTTTG
66 CGAGTCTAAGTTCGTGCCTCAAATACGACAAACATGGGTTCAAGTAATGATCTTCAAACACTTTG
* *
105804 TGATTAGGCACCATAAACACATTCT-CTATTTTAGGATAAATGATACTGATGATCTTGAAA
131 TGATTAGACACCATAAACACATTCTCCT-CTTTAGGATAAATGATACTGATGATCTTGAAA
* * *
105864 CATTTGGATACATGATATTGAAGCTTTGGTTTC-ACAAGAAAGGCTTTTTTCCCCCCAATTTTTG
1 CATTTGGATACATGATATTGAAGCTTTAGTTTCGA-AAGAAAGGATTTTTTCCCACCAATTTTTG
**
105928 TCGAGTCTAAGTTCGTGCCTCAAATGA-GACAAACATGGGTTCAAGTAATGATCTTCATTCACTT
65 TCGAGTCTAAGTTCGTGCCTCAAAT-ACGACAAACATGGGTTCAAGTAATGATCTTCAAACACTT
*
105992 TGTGATTAGACACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATG
129 TGTGATTAGACACCATAAACACATTCTCCTCTTTAGGATAAATGATACTGATG
106045 GTTTTCTTTT
Statistics
Matches: 160, Mismatches: 18, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
189 1 0.01
190 156 0.98
191 3 0.02
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (190 bp):
CATTTGGATACATGATATTGAAGCTTTAGTTTCGAAAGAAAGGATTTTTTCCCACCAATTTTTGT
CGAGTCTAAGTTCGTGCCTCAAATACGACAAACATGGGTTCAAGTAATGATCTTCAAACACTTTG
TGATTAGACACCATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGATCTTGAAA
Found at i:106241 original size:158 final size:157
Alignment explanation
Indices: 106079--107667 Score: 499
Period size: 158 Copynumber: 10.0 Consensus size: 157
106069 TCATTGCCCT
* * *
106079 ATTTTCTTTAAATGAAAGTTCATACCTTAAATAAGACAAGCATCTATTCTCGTGACAGTCTCCAT
1 ATTTT-TTTAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGT-ACAGTCTCCAT
*
106144 TCTTTTCAAGATTGGGAAGCCA-AAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTTG
64 TCTTTTCAAGATTAGGAAGCCACAAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTTG
106208 GTGTTGCAAGAAAAGCTTTTCTTTCCACC-
129 GT-TTGCAAGAAAAGCTTTTCTTTCCACCA
* ** * * *
106237 ATTTTTGATAGAATCAAAGTT--TGTCTCTAAATAAGACAAACAT-GAATACGT-ATACGGATC-
1 ATTTTT-TTA-AATCAAAGTTCATACCT-TAAATAAGACAAACATCG-ATTC-TCGTACAG-TCT
* * * * * * * * * * *
106297 CCTATTCTTCTCAAGAGTGGGCA-CCATAAACATAGTCT-TCTCATTTGGATACACGATATTGAA
60 CC-ATTCTTTTCAAGATTAGGAAGCCACAAACACATTCTCT-TCATTAGGATACAAGACATTGAT
* * * * *
106360 GCTTTGATTTCGTAAGAAAAACATTT-TTCCCACCA
123 GCTTTGGTTT-GCAAGAAAAGCTTTTCTTTCCACCA
* * * * ** * * * *
106395 ATTTTTGTAAAGCCTAAGTTCGTA-CTTCAAATGGGACAAACATGGGTTCTAGTA-ATGATCTTC
1 ATTTTTTTAAA-TCAAAGTTCATACCTT-AAATAAGACAAACATCGATTCTCGTACA-G-TCTCC
* ** * * * * *
106458 -TTGCACTTT-GGGATTTGGAA-CTACAAACGCATTCTCCTCTTTAGGATA-AATGACATTGATG
62 ATT-C-TTTTCAAGATTAGGAAGCCACAAACACATTCTCTTCATTAGGATACAA-GACATTGATG
* ** * * * *
106519 ATTTTTTTTGCATGGAAATCTTTTCTTTCC-CCT
124 CTTTGGTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * * * * *
106552 CTTTTCCTTTAAATGAAATTTCATTCCTTAAATATGACAAGCATCGATTCTCATAACAGTCTCCA
1 ATTTT--TTTAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGT-ACAGTCTCCA
* * * * *
106617 TTCTTTTCAAGATTAGGAAGCC-GAAACAC-TTTTCGTTCTTTTGGATACAAGAAATTGATGCTT
63 TTCTTTTCAAGATTAGGAAGCCACAAACACATTCTC-TTCATTAGGATACAAGACATTGATGCTT
* *
106680 TGGTATTGCAAGAAATGC-TTTCTTTTCTACC-
127 TGGT-TTGCAAGAAAAGCTTTTC-TTTCCACCA
* * * ** * * * * * *
106711 GTTTTTTATACAATTAATGTTTGT-CTCTTAAATATGACAAACCT-GAATACTCATACTAATCCC
1 ATTTTTT-TA-AATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAC-AGTCTC
* * * * * * * *
106774 CATTCTTTTCAGGATTTGG-TGCCATAAAC-CTAGTCT-TCTCATTAGGATACATGATATTAATG
61 CATTCTTTTCAAGATTAGGAAGCCACAAACAC-ATTCTCT-TCATTAGGATACAAGACATTGATG
* * *
106836 CTTTGGTTTCGCAAGAAATGCATGT-TTTCCACCA
124 CTTTGGTTT-GCAAGAAAAGCTTTTCTTTCCACCA
* * * * * * * * *
106870 ATTTTTATAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTA-ATGATCTTCA
1 ATTTTTTTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTACA-G-TCTCCA
** * * * * * *
106934 TTCATTTT-GGGATTAGGAA-CTACAAACGCATTCTCCTCACTAGGATA-AATGATATTGATGAT
63 TTC-TTTTCAAGATTAGGAAGCCACAAACACATTCTCTTCATTAGGATACAA-GACATTGATG-C
** * * ** * *
106996 TTTCTTTTGCATGGAAATATTTTCTTTGC-CCT
125 TTTGGTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
107028 ATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGCATCGATTCTTGTAACAGCCTCCA
1 ATTTT--TTTAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGT-ACAGTCTCCA
* * * * * *
107093 TTCTTTTCAAGATTAGAAAGCTA-AAACACATTCCCTTCGTTAGGATACATGACATTGACGCTTT
63 TTCTTTTCAAGATTAGGAAGCCACAAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTT
* * * * *
107157 GGGGTCGTAAAAAAAGCTTTTCTTTCCATC-
128 -GGTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * * * * * * * *
107187 GTTTTTGATAGAACCAAAGTGT--TTCTTTTAAATGAGACAAACGT-GAATACTCATACTAAT-T
1 ATTTTT-TTA-AATCAAAGT-TCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAC-AGTCT
* * * * * * * * * *
107248 CCGATTCTTTTTAGGAGTAGGCA-CCACAAATATAGTCT-TCTCATTTGGATACATGATATTGAT
60 CC-ATTCTTTTCAAGATTAGGAAGCCACAAACACATTCTCT-TCATTAGGATACAAGACATTGAT
* *
107311 GCTTTGGTTTCACAAGAAATGCATTTTC---CCACCA
123 GCTTTGGTTT-GCAAGAAAAGC-TTTTCTTTCCACCA
* ** * * * * * * * * *
107345 ATTTTTGTAAAGTTTAGGTTCATGCCTCAAGTGAGACAAACATGGATTATAGTA-ATGATCTTCA
1 ATTTTTTTAAA-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTACA-G-TCTCCA
* ** * * * * *
107409 GTCATTTT-GTGATTA-GACA-CTATAAACACATTCTCTTCTTTAGGATA-AATGACGTTAATGA
63 TTC-TTTTCAAGATTAGGA-AGCCACAAACACATTCTCTTCATTAGGATACAA-GACATTGATG-
* ** * * * *
107470 TTTTCTTTTGCATGAAAATCTTTTCTTTGC-CCT
124 CTTTGGTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *** *
107503 ATTTTCCTTTAAATCAAAGTTAATACCTTAAATAAGACAGGTATCGATTCTCGTAATATTATTGT
1 ATTTT--TTTAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCG---TA-CA--GT
* * ** * *
107568 CTCCATTCTTTTCAGGATTTGGGAAGCCA-AAAGGCATTCCCTTTC-TTAGGATACATGACATTG
58 CTCCATTCTTTTCAAGA-TTAGGAAGCCACAAACACATTCTC-TTCATTAGGATACAAGACATTG
107631 ATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACC
121 ATGCTTTGGT-TTGCAAGAAAAGCTTTTCTTTCCACC
107668 GTTTTTGATG
Statistics
Matches: 1014, Mismatches: 304, Indels: 218
0.66 0.20 0.14
Matches are distributed among these distances:
155 1 0.00
156 13 0.01
157 134 0.13
158 392 0.39
159 363 0.36
160 30 0.03
161 1 0.00
162 2 0.00
163 4 0.00
164 14 0.01
165 50 0.05
166 10 0.01
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (157 bp):
ATTTTTTTAAATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTACAGTCTCCATTC
TTTTCAAGATTAGGAAGCCACAAACACATTCTCTTCATTAGGATACAAGACATTGATGCTTTGGT
TTGCAAGAAAAGCTTTTCTTTCCACCA
Found at i:106967 original size:475 final size:474
Alignment explanation
Indices: 105864--107718 Score: 2268
Period size: 475 Copynumber: 3.9 Consensus size: 474
105854 GATCTTGAAA
* * *
105864 CATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAAGGCTTTTTTCCCCCCAATTTTTGT
1 CATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAATGCATTTTTCCCACCAATTTTTGT
** * *
105929 CGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATGGGTTCAAGTAATGATCTTCATTCACTTTG
66 AAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTTTG
* * * * *
105994 TGATTAGACACTATAAACACATTCTCCTCTTTAGGATAAATGATACTGATGGTTTTCTTTTGCA-
131 GGATTAGACACTACAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTTGCAT
* * *
106058 GGAAAATTTTTTCATTGCCCTATTTT-CTTTAAATGAAAGTTCATACCTTAAATAAGACAAGCAT
196 GG-AAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCAT
* * * * *
106122 CTATTCTCGTGACAGTCTCCATTCTTTTCAAGATTGGGAAGCCAAAACACATTCTCTTCATTAGG
260 CGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACAC-TTCCCTTC-TTAGG
*
106187 ATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCATTTTTGATAGAATC
323 ATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATC
* * ** * * *
106252 AAAGTTTGTCTC-TAAATAAGACAAACATGAATACGT-ATACGGATCCCTATTCTTCTCAAGAGT
388 AAAGTTTGTCTCTTAAATATGACAAACCTGAATAC-TCATACTAATCCCCATTCTTTTCAGGAGT
*
106315 GGGCACCATAAACATAGTCTTCT
452 AGGCACCATAAACATAGTCTTCT
* * ** **
106338 CATTTGGATACACGATATTGAAGCTTTGATTTCGTAAGAAAAACATTTTTCCCACCAATTTTTGT
1 CATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAATGCATTTTTCCCACCAATTTTTGT
* * *
106403 AAAGCCTAAGTTCGTACTTCAAATGGGACAAACATGGGTTCTAGTAATGATCTTC-TTGCACTTT
66 AAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATT-CACTTT
* *
106467 GGGATTTGGA-ACTACAAACGCATTCTCCTCTTTAGGATAAATGACATTGATGATTTT-TTTTGC
130 GGGA-TTAGACACTACAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTTGC
* * * * * *
106530 ATGGAAATCTTTTCTTTCCCCTCTTTTCCTTTAAATGAAATTTCATTCCTTAAATATGACAAGCA
194 ATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCA
* * * *
106595 TCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCGAAACACTTTTCGTTCTTTTG
259 TCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACAC-TTCCCTTC-TTAG
* * * * * *
106660 GATACAAGAAATTGATGCTTTGGTATTGCAAGAAATGC-TTTCTTTTCTACCGTTTTTTATACAA
322 GATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTC-TTTCCACCGTTTTTGATAGAA
* * *
106724 TTAATGTTTGTCTCTTAAATATGACAAACCTGAATACTCATACTAATCCCCATTCTTTTCAGGAT
386 TCAAAGTTTGTCTCTTAAATATGACAAACCTGAATACTCATACTAATCCCCATTCTTTTCAGGAG
* ** *
106789 TTGGTGCCATAAACCTAGTCTTCT
451 TAGGCACCATAAACATAGTCTTCT
* *
106813 CATTAGGATACATGATATT-AATGCTTTGGTTTCGCAAGAAATGCATGTTTT-CCACCAATTTTT
1 CATTTGGATACATGATATTGAA-GCTTTGGTTTCACAAGAAATGCAT-TTTTCCCACCAATTTTT
* *
106876 ATAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTT
64 GTAAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTT
* ** *
106941 TGGGATTAGGA-ACTACAAACGCATTCTCCTCACTAGGATAAATGATATTGATGATTTTCTTTTG
129 TGGGATTA-GACACTACAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTTG
* *
107005 CATGGAAATATTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATTCCTTAAATAAGACAAGC
193 CATGGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGC
** * * *
107070 ATCGATTCTTGTAACAGCCTCCATTCTTTTCAAGATTAGAAAGCTAAAACACATTCCCTTCGTTA
258 ATCGATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACAC-TTCCCTTC-TTA
* * * * * * *
107135 GGATACATGACATTGACGCTTTGGGGTCGTAAAAAAAGCTTTTCTTTCCATCGTTTTTGATAGAA
321 GGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAA
* * * * * *
107200 CCAAAGTGTT-TCTTTTAAATGA-GACAAACGTGAATACTCATACTAATTCCGATTCTTTTTAGG
386 TCAAAGT-TTGTCTCTTAAAT-ATGACAAACCTGAATACTCATACTAATCCCCATTCTTTTCAGG
* *
107263 AGTAGGCACCACAAATATAGTCTTCT
449 AGTAGGCACCATAAACATAGTCTTCT
*
107289 CATTTGGATACATGATATTGATGCTTTGGTTTCACAAGAAATGCA-TTTTCCCACCAATTTTTGT
1 CATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAATGCATTTTTCCCACCAATTTTTGT
* * * * * * * * *
107353 AAAGTTTAGGTTCATGCCTCAAGTGAGACAAACATGGATTATAGTAATGATCTTCAGTCATTTTG
66 AAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTTTG
* * * * *
107418 TGATTAGACACTATAAACACATTCTCTTCTTTAGGATAAATGACGTTAATGATTTTCTTTTGCAT
131 GGATTAGACACTACAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTTGCAT
* * * *
107483 GAAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTAATACCTTAAATAAGACAGGTATC
196 GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
** * *
107548 GATTCTCGTAATATTATTGTCTCCATTCTTTTCAGGATTTGGGAAGCCAAAAGGCA-TTCCCTTT
261 GATTCTC---ATA--ACAGTCTCCATTCTTTTCAAGA-TTAGGAAGCCAAAA--CACTTCCC-TT
*
107612 CTTAGGATACATGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
317 CTTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGAT
* * *
107677 -GTAATCGAACTTTGTCTCTTAAATATGAAAAACAC-GAATACT
382 AG-AATCAAAGTTTGTCTCTTAAATATGACAAAC-CTGAATACT
107719 TAGGATACAT
Statistics
Matches: 1181, Mismatches: 169, Indels: 55
0.84 0.12 0.04
Matches are distributed among these distances:
473 32 0.03
474 321 0.27
475 409 0.35
476 280 0.24
477 8 0.01
478 2 0.00
480 22 0.02
481 102 0.09
482 3 0.00
483 2 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.37
Consensus pattern (474 bp):
CATTTGGATACATGATATTGAAGCTTTGGTTTCACAAGAAATGCATTTTTCCCACCAATTTTTGT
AAAGTCTAAGTTCGTACCTCAAATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTTTG
GGATTAGACACTACAAACACATTCTCCTCTTTAGGATAAATGACATTGATGATTTTCTTTTGCAT
GGAAATCTTTTCTTTGCCCTATTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATC
GATTCTCATAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCAAAACACTTCCCTTCTTAGGATA
CAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCGTTTTTGATAGAATCAAA
GTTTGTCTCTTAAATATGACAAACCTGAATACTCATACTAATCCCCATTCTTTTCAGGAGTAGGC
ACCATAAACATAGTCTTCT
Found at i:109803 original size:317 final size:317
Alignment explanation
Indices: 109402--110029 Score: 814
Period size: 317 Copynumber: 2.0 Consensus size: 317
109392 CTTTAAATCA
* * *
109402 AAGTTCATACCTTAAATAAGACAAGCATCAATTCTCGTAACAGTTTCCAGTCGTTTCTAGATTGG
1 AAGTTCATACCTTAAAGAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCGTTTCTAGATTAG
* * * ** *
109467 GAAGCCAAAACAGATTCCCTTCGTTGGGATACATGACATTGATGCTTTGTTGTCGCAAGAAAAGC
66 GAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGC
* *
109532 TTCTCTTTCCAAC-GTTTTTAATAGAATCAAAGCTTATCTCTTAAATACGATAAACATGAATACT
131 TTCTCTTTCC-ACTGTTTTTAATAGAATCAAAGCTTATCTCTTAAATAAGAAAAACATGAATACT
*** * * * *
109596 CATATTGATCCCCATTC-TTTTCACGATTGGGCACCATAAACATAG-CATTCTCCTTAGGATACA
195 CATACCAATCCCCATTCGTTTT-ACGAATAGGCACCACAAACATAGTC-TTCTCATTAGGATACA
* * * * *
109659 TGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCACGAATTTTTGTATAGTCT
258 CGATATTGATGCTTTGGTTTCACAAGAAAGACATTTCTCCCACCAATTTTTGTATAGTCT
* * * *
109719 AAGTTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTC-TTTTTAAGATTA
1 AAGTTCATACCTTAAAGAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCGTTTCT-AGATTA
* * *
109783 GGAAGCCAAAATACATTCCCTTCATTAGGATACATGAGATTGATGCTTTGGGGTCATAAGAAAAG
65 GGAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAG
** * * *
109848 CTTCTCTTTCCACTGTTTTTGTTAGAATCAAAGTTTCTCTCTTAAATAAGAAAAACATGAATCCT
130 CTTCTCTTTCCACTGTTTTTAATAGAATCAAAGCTTATCTCTTAAATAAGAAAAACATGAATACT
* * * * **
109913 CATGCCAATTCCTATTCGTTTTAGGAATAGGCACCACAAACATAGTCTTCTCATTTTGATACACG
195 CATACCAATCCCCATTCGTTTTACGAATAGGCACCACAAACATAGTCTTCTCATTAGGATACACG
*
109978 ATATTGATGCTTTGGTTTCACAAGAAATACATTTCTCCCACCAATTTTTGTA
260 ATATTGATGCTTTGGTTTCACAAGAAAGACATTTCTCCCACCAATTTTTGTA
110030 AAGTTTAGGT
Statistics
Matches: 265, Mismatches: 42, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
316 6 0.02
317 254 0.96
318 5 0.02
ACGTcount: A:0.31, C:0.20, G:0.15, T:0.34
Consensus pattern (317 bp):
AAGTTCATACCTTAAAGAAGACAAGCATCAATTCTCGTAACAGTCTCCAGTCGTTTCTAGATTAG
GAAGCCAAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGC
TTCTCTTTCCACTGTTTTTAATAGAATCAAAGCTTATCTCTTAAATAAGAAAAACATGAATACTC
ATACCAATCCCCATTCGTTTTACGAATAGGCACCACAAACATAGTCTTCTCATTAGGATACACGA
TATTGATGCTTTGGTTTCACAAGAAAGACATTTCTCCCACCAATTTTTGTATAGTCT
Found at i:110047 original size:793 final size:793
Alignment explanation
Indices: 108929--110505 Score: 2187
Period size: 793 Copynumber: 2.0 Consensus size: 793
108919 TATATCAAAA
* *
108929 TTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCTATTCTTTTCCAGATTAGGAA
1 TTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAA
* * *
108994 GCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTT
66 GCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTC
* * * *
109059 TCTTTCCACCGTTTTTGATAGAATCAATGTTTATCTCTTAAATATGACAAACGTGAATACTCATA
131 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAACATGAATACTCATA
** * * * * *
109124 CTGATCCCCATTATTTTCAAGATTTGGCACCATAAACATAGTCTTCTCCTAAGGATACATCATCT
196 CCAATCCCCATTATTTTCAAGAATAGGCACCACAAACATAGTCTTCTCATAAGGATACATCATAT
* * * *
109189 TGAAGCCTTGGTTTCGCAAGAAAGGCTTTTTCCTAACCAATTTTTGTAAAGTCTATGTTCGTGCC
261 TGAAGCCTTGGTTTCACAAGAAAGACTTTCTCCTAACCAATTTTTGTAAAGTCTAGGTTCGTGCC
*
109254 TCAAATGAGACAAACATGGATTCTAGTAATGCTCTTCATTCATTTTGTGATTAGGCACTATAAAC
326 TCAAATGAGACAAACATGGATTCTAGTAATGCTCTTCAGTCATTTTGTGATTAGGCACTATAAAC
* * * *
109319 TCATTCTCCTATCTT-GGATAAATGATGCTGATGATTTTCTTTTACATGGAAATCTTTTCTTTTC
391 ACATTCTCCT-TCTTAAGATAAACGATGCTGATGATTTTCTTTTACAT-GAAATCTTTTCTTTGC
* * * *
109383 CC-TTTTTTCCTTTAAATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTCGTAACAGTT
454 CCTTTTTTTCCTCTAAATCAAAATTCATACCTTAAATAAGACAAGCATCAATTCACGTAACAGTC
* * * * *
109447 TCCAGTCGTTTCTAGATTGGGAAGCCAAAACAGATTCCCTTCGTTGGGATACATGACATTGATGC
519 TCCAGTCGTTTCTAGATTAGGAAGCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGC
* *
109512 TTTGTTGTCGCAAGAAAAGCTTCTCTTTCCAACGTTTTTAATAGAATCAAAGCTTATCTCTTAAA
584 TTTGGTGTCGCAAGAAAAGCTTCTCCTTCCAACGTTTTTAATAGAATCAAAGCTTATCTCTTAAA
* * * * * *
109577 TACGATAAACATGAATACTCATATTGATCCCCATTCTTTTCACGATTGGGCACCATAAACATAG-
649 TACGACAAACATGAATACTCATACTAATCCCCATTATTTTCAAGATTCGGCACCATAAACATAGT
* * * * *
109641 CATTCTCCTTAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAAGGCATTTTTCCCA-CGAA
714 C-TTCTCCTAAGGATACATCATATTGAAGCCTTGGTTTCGCAAGAAAGGC-TTTTTCCCAGCCAA
109705 TTTTTGTATAGTCTAAG
777 TTTTTGTATAGTCTAAG
*
109722 TTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTTAAGATTAGGAA
1 TTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAA
* * * *
109787 GCCAAAATACATTCCCTTCATTAGGATACATGAGATTGATGCTTTGGGGTCATAAGAAAAGCTTC
66 GCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTC
* * * * *
109852 TCTTTCCACTGTTTTTGTTAGAATCAAAGTTTCTCTCTTAAATAAGAAAAACATGAATCCTCATG
131 TCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAACATGAATACTCATA
* * * * ***
109917 CCAATTCCTATTCGTTTT-AGGAATAGGCACCACAAACATAGTCTTCTCATTTTGATACA-CGAT
196 CCAATCCCCATT-ATTTTCAAGAATAGGCACCACAAACATAGTCTTCTCATAAGGATACATC-AT
* * * * *
109980 ATTGATGCTTTGGTTTCACAAGAAATACATTTCTCC-CACCAATTTTTGTAAAGTTTAGGTTCGT
259 ATTGAAGCCTTGGTTTCACAAGAAAGAC-TTTCTCCTAACCAATTTTTGTAAAGTCTAGGTTCGT
* * * **
110044 GCCTCAAATGAGACAAACATGGATTCTAGTAATGGTCTTCAGTCATTTTTTGATTTGGTGCTATA
323 GCCTCAAATGAGACAAACATGGATTCTAGTAATGCTCTTCAGTCATTTTGTGATTAGGCACTATA
* * * *
110109 AACACATTCTCCTTTTTAAGATAAACGATGTTGATGATTTTCTTTTGCATTAAATCTTTTCTTTG
388 AACACATTCTCCTTCTTAAGATAAACGATGCTGATGATTTTCTTTTACATGAAATCTTTTCTTTG
* * * * *
110174 CCCTTTTTTTTCTCTATATCAAAATTCATACCTTAAATAAGATAAGCATCGATTCACGTAATAGT
453 CCCTTTTTTTCCTCTAAATCAAAATTCATACCTTAAATAAGACAAGCATCAATTCACGTAACAGT
* * * *
110239 CTCTATTCTTTTCTAGATTAGGAAGCCAAAACACATTCCCCTCATTAGGATGCATGACATTGATG
518 CTCCAGTCGTTTCTAGATTAGGAAGCCAAAACACATTCCCCTCATTAGGATACATGACATTGATG
* * * * * *
110304 CTTTGGTGTCGTAAGAAAAGCTTTTCCTTCCACCGTTTTTGATAGAATCAATGTTTATCTCTTAA
583 CTTTGGTGTCGCAAGAAAAGCTTCTCCTTCCAACGTTTTTAATAGAATCAAAGCTTATCTCTTAA
* *
110369 ATATGACAAACGTGAATACTCATACTAATCCCCATTATTTTCAAGATTCGGCACCATAAACATAG
648 ATACGACAAACATGAATACTCATACTAATCCCCATTATTTTCAAGATTCGGCACCATAAACATAG
110434 TCTTCTCCTAAGGATACATCATATTGAAGCCTTGGTTTCGCAAGAAAGGCTTTTTCCCAGCCAAT
713 TCTTCTCCTAAGGATACATCATATTGAAGCCTTGGTTTCGCAAGAAAGGCTTTTTCCCAGCCAAT
110499 TTTTGTA
778 TTTTGTA
110506 AAGTTTATGT
Statistics
Matches: 682, Mismatches: 95, Indels: 14
0.86 0.12 0.02
Matches are distributed among these distances:
792 29 0.04
793 642 0.94
794 11 0.02
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (793 bp):
TTCATACCTTAAAGAAGACAAGCATCGATTCTCGTAATAGTCTCCATTCTTTTCAAGATTAGGAA
GCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGCTTTGGGGTCACAAGAAAAGCTTC
TCTTTCCACCGTTTTTGATAGAATCAAAGTTTATCTCTTAAATAAGAAAAACATGAATACTCATA
CCAATCCCCATTATTTTCAAGAATAGGCACCACAAACATAGTCTTCTCATAAGGATACATCATAT
TGAAGCCTTGGTTTCACAAGAAAGACTTTCTCCTAACCAATTTTTGTAAAGTCTAGGTTCGTGCC
TCAAATGAGACAAACATGGATTCTAGTAATGCTCTTCAGTCATTTTGTGATTAGGCACTATAAAC
ACATTCTCCTTCTTAAGATAAACGATGCTGATGATTTTCTTTTACATGAAATCTTTTCTTTGCCC
TTTTTTTCCTCTAAATCAAAATTCATACCTTAAATAAGACAAGCATCAATTCACGTAACAGTCTC
CAGTCGTTTCTAGATTAGGAAGCCAAAACACATTCCCCTCATTAGGATACATGACATTGATGCTT
TGGTGTCGCAAGAAAAGCTTCTCCTTCCAACGTTTTTAATAGAATCAAAGCTTATCTCTTAAATA
CGACAAACATGAATACTCATACTAATCCCCATTATTTTCAAGATTCGGCACCATAAACATAGTCT
TCTCCTAAGGATACATCATATTGAAGCCTTGGTTTCGCAAGAAAGGCTTTTTCCCAGCCAATTTT
TGTATAGTCTAAG
Found at i:111891 original size:159 final size:158
Alignment explanation
Indices: 111253--113241 Score: 480
Period size: 159 Copynumber: 12.5 Consensus size: 158
111243 TTTCCTTTAT
* * ** * ** * *
111253 ATCAAAGTTCATACCTTAAATAAGACAAGCATCAATTCTTATAACAGTCTCCGTTCGTTTCTAGA
1 ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAGA
* * * **
111318 TTGGGAAGCCA-AAACACATTCCCTTCATTAAGATACAAGACATTGATGCCTTGGTGTCGCAAGA
66 TTGGGAA-CCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGA
* * *
111382 AAAGCTTTTCTTCCCACCGTTTTTGATAGA
130 AAAGCTTTTCTTTCCATC-TTTTTGTTAGA
* * * * * * * *
111412 ATCAAAGTTTAT-CTCCTAAATACGACAAACAT-GAATACTCAT-ACTGATCCCCATTCTTTTCA
1 ATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTCTCGTAAC-AATCTCTATTCTTTTCA
* * * * * * **
111474 AGATT-GGACACCATAAACATAGTAT-TC-TCCTTAGGATAAATGATATTGATGCTTTGGTTTGG
63 AGATTGGGA-ACCATAAACACA-T-TCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCA
* * * * * *
111536 CACGAAAGGCTTTT-TTCCCACCAACTTTTG-T-GA
125 TAAGAAAAGCTTTTCTTTCCATC--TTTTTGTTAGA
** * ** * * ** * *
111569 AGTCTCAGTTCATACTTTAAATGGGACAAACATGGATTCTAGTAATGAT-TTTCGTTCATTTT-A
1 A-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCT-ATTC-TTTTCA
* * * ** * * * * * ** *
111632 TGATTAGGCATTATAAACACATTTTCC-TCCTTAGGATAAATGATATTGATGATTTTCTTTTGCA
63 AGATTGGGAACCATAAACACA-TTCCCTTCATTAGGATACATGACATTGATG-CTTTGGTGT-CA
* *
111696 T--GAAAATCTTTTTTTTGCTCTAT-TTTTCT-TTA-A
125 TAAGAAAAGCTTTTCTTT-C-C-ATCTTTT-TGTTAGA
* * *
111729 ATCAAAGTTCATACCTTAAATAAGACAAGCATCGATTCTCGTGACAATCTCTATTCTTTTGAAGA
1 ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAGA
* *
111794 TTGGGAAGCCA-AAACACATTCCCTTCATTAGGATACAAGACATTGATGCTTTGGGGTCATAAGA
66 TTGGGAA-CCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGA
111858 AAAGCTTTTCTTTCCATCGTTTTTGTTAGA
130 AAAGCTTTTCTTTCCATC-TTTTTGTTAGA
* * ** * *
111888 ATCAAAGTTTC-T-CTCTTAAATAGGACAAACCTTAATACTCAT-ACTAATC-CTGATTCTTTTC
1 ATCAAAG-TTCATAC-CTTAAATAAGACAAACATCGATTCTCGTAAC-AATCTCT-ATTCTTTTC
* * * * * * * * * * *
111949 ATGATTTGGCACCATAAACATAGT-CTTATCATTAGGATACACGATATTGATGATTTGGTTTCAC
62 AAGATTGGGAACCATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTGTCAT
* * * * *
112013 AAGAAAGGC-TTTCTTCCCACCAATTATTG-TAAA
126 AAGAAAAGCTTTTCTTTCCATC--TTTTTGTTAGA
* * * * * * * * **
112046 ATCTAAGTTCATGCCTCAAATGAGATAAACATGGATTCTAGTAACGATCT-TGATTCATTTT-GT
1 ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCT-ATTC-TTTTCAA
* * * * ** * *** * * ** * *
112109 GATTAGGCACTATAAACGCATTTTGC-TCTTTAGGATA-ATTGATGCTGACGTTTTTCTTTTACT
64 GATTGGGAACCATAAACACA-TTCCCTTCATTAGGATACA-TGACATTGATGCTTTGGTGTCA-T
** * * *
112172 TGGAAATATCTTTT-TTGCCCAAT-TTTCTT-TTA-T
126 AAGAAA-AGCTTTTCTT-TCC-ATCTTT-TTGTTAGA
* * ** * * *
112205 ATCAAAGTTCATACCTTAAATAAGGCAAGCATCGATTCTTATAACAGTCTCCATTCATTTCAAGA
1 ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAGA
* * * * *
112270 TTGGTTAGCCA-AAACACATTCCCTTCATTAGGATACATGACATTGATGCTTAGGGGTCGTAAGA
66 TTGG-GAACCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGA
* *
112334 AAAGCTTTT-TTTACCATCTTTTTTGATGGA
130 AAAGCTTTTCTTT-CCATC-TTTTTGTTAGA
* * * * ** * *
112364 ATCAAAGTTTC-T-CTCTTAAATAAGACAAACGTGGGTTCTAGTAATGATCT-TTTTGCACTTT-
1 ATCAAAG-TTCATAC-CTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATT-C-TTTTC
* * * * *** * * * *
112425 GAGATTTGGAACTACAAGTGCATTCTCC-TCATTAGGATA-AGTGATATTGATGATTT-TTTTGC
62 AAGATTGGGAACCATAAACACATTC-CCTTCATTAGGATACA-TGACATTGATGCTTTGGTGT-C
* * * *
112487 AT--GGAAATCATTTCTTTGCCCTCTTTTCCT-TTA-A
124 ATAAGAAAAGCTTTTCTTT-CCATCTTTT--TGTTAGA
* * * * *
112521 ATCAAAGTT-AAATCCATAAATAAGACAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAG
1 ATCAAAGTTCATA-CCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAG
* * * * * **
112585 ATTGGGAAACCA-AAACACATTCCCTCCATTAGAATACAAGACATTAATGCTTTAGTGTCGCAAG
65 ATTGGG-AACCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAG
*
112649 AAAAGCTTTTCTTTCCACCGTTTTTGATT-GA
129 AAAAGCTTTTCTTTCCATC-TTTTTG-TTAGA
* ** * * * ** * * * *
112680 ATCAAAGTAT-GTTTCTTAAATACGAAAAAC-TTGAATGCTCATGCTGATCCCCAGCCCCATTCT
1 ATCAAAGT-TCATACCTTAAATAAGACAAACATCG-AT--TC-T-C-G-TAACAATCTCTATTCT
* * * * * * * *
112743 TTTCAAGATTGGGCACCGTAAACATAGT-CTTCTCATTAGGATACATGATATTGATGCTTTGATT
58 TTTCAAGATTGGGAACCATAAACACATTCCCT-TCATTAGGATACATGACATTGATGCTTTGGTG
*** * * * *
112807 TTGCAAGAAATGCGTTT-TTCCCACCAATTTTTG-TA-A
122 TCATAAGAAAAGCTTTTCTTTCCATC--TTTTTGTTAGA
* * * * * * * * * ** * **
112843 AGTCTAACTTCGTACCTCAAATGAGACAAACATGGGTTCTAGGAATGATCTTTATTCATTTT-GG
1 A-TCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTC-TTTTCAA
** * * * * * * * * * * **
112907 GATTAAGAGCTACAAACGCATCCTCCTT-ATTCGGATAAATGATATTGATGATTT--TCTTTTAC
64 GATTGGGAACCATAAACACATTC-CCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATA-
* * * * *
112969 GGAAAATCTTTTCTTTGCCCTACTTTCCT-TCA-A
127 AGAAAAGCTTTTCTTT-CCAT-CTTT-TTGTTAGA
* * * * * *
113002 ATCAAAGTTCATTCCTTAAATAAGACGAGCATCGATTCTCATAACAGTCTCCATTCTTTTCAAGA
1 ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAGA
* * * * ***
113067 TGGGGAAGCCA-AAACACATTCCCTTCATTAGGTTGCAAGACATTGATGCTTTGGTGTTGCAAGA
66 TTGGGAA-CCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGA
* *
113131 AAAGCTTTTCTTTCCACCTCTTTTGATCA-A
130 AAAGCTTTTCTTTCCATCT-TTTTG-TTAGA
* * * * *
113161 ACCAAAGTTTAT-CTTTTAAATAAGACAAACAT-GAATACAT-GT-ACGGATC-CTCATTCTTTT
1 ATCAAAGTTCATAC-CTTAAATAAGACAAACATCG-ATTC-TCGTAAC-AATCTCT-ATTCTTTT
*
113221 CAAGATTGGGCACCATAAACA
61 CAAGATTGGGAACCATAAACA
113242 TAGTTTTCTT
Statistics
Matches: 1297, Mismatches: 402, Indels: 262
0.66 0.20 0.13
Matches are distributed among these distances:
156 15 0.01
157 128 0.10
158 390 0.30
159 594 0.46
160 40 0.03
161 11 0.01
162 5 0.00
163 5 0.00
164 33 0.03
165 76 0.06
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.36
Consensus pattern (158 bp):
ATCAAAGTTCATACCTTAAATAAGACAAACATCGATTCTCGTAACAATCTCTATTCTTTTCAAGA
TTGGGAACCATAAACACATTCCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAA
AAGCTTTTCTTTCCATCTTTTTGTTAGA
Found at i:113615 original size:208 final size:207
Alignment explanation
Indices: 113224--113633 Score: 570
Period size: 208 Copynumber: 2.0 Consensus size: 207
113214 TTCTTTTCAA
* * * *
113224 GATTGGGCACCATAAACATAGTTTTCTTATTTCGATACACGATATTGAAGCTTTAGTTTCACAAG
1 GATTAGGCACCATAAACATAGTCTTCTCATTTCGATACACGATATTGAAGCTTTAGTTTCACAAC
* * * * * *
113289 AAAGGCTTTTTTCCCACCAATTTTTTTTGAGTCTAGGTTCTTGCCTCAAGTGAGACAAACATGGG
66 AAAAGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
* * **
113354 TTCTAGTAATAATCTTCATTCATTTTGCTATTAGGAACTGCAAACGTATTCTCCTCATTAGGATA
131 TTCTAGTAATAATCCTCATTCATTTTGCTATTAGGAACTACAAACACATTCTCCTCATTAGGATA
113419 AATGATATTGAT
196 AATGATATTGAT
* * * **
113431 GATTAGGCACCATAAACATAGTCTTCTCATTTTGATACATGATATTGAAGCTTTGGTTTTGCAAC
1 GATTAGGCACCATAAACATAGTCTTCTCATTTCGATACACGATATTGAAGCTTTAGTTTCACAAC
113496 AAAAGCTTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGG
66 AAAAGC-TTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGG
* * * * * *
113561 GTTCTAGTAATGATCCTCATTCGTTTTG-TGATTAGGCACTATAAACACATTCTCCTCTTTTGGA
130 GTTCTAGTAATAATCCTCATTCATTTTGCT-ATTAGGAACTACAAACACATTCTCCTCATTAGGA
113625 TAAATGATA
194 TAAATGATA
113634 CTAGGGATAT
Statistics
Matches: 176, Mismatches: 25, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
207 62 0.35
208 114 0.65
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.37
Consensus pattern (207 bp):
GATTAGGCACCATAAACATAGTCTTCTCATTTCGATACACGATATTGAAGCTTTAGTTTCACAAC
AAAAGCTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATGGG
TTCTAGTAATAATCCTCATTCATTTTGCTATTAGGAACTACAAACACATTCTCCTCATTAGGATA
AATGATATTGAT
Found at i:114057 original size:158 final size:161
Alignment explanation
Indices: 113431--116934 Score: 642
Period size: 158 Copynumber: 22.1 Consensus size: 161
113421 TGATATTGAT
* *
113431 GATTAGGCACCATAAACATAGTCTTCTCATTTT-GATACATGATATTGAAGCTTTGGTTTTGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* *
113495 CAAAAGCTTTTTTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATGAGACAAACATG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * **
113560 GGTTCTAGTAATGATCCTCATTCGTTTT-GT
131 GATTCTAGTAATGATCCTCATTCATTTTCAA
* * * * * * * * *
113590 GATTAGGCACTATAAACACATTCTCCTC-TTTTGGATAAATGATACT-AGGGATATT-CTTTTGC
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGA-AGCT-TTGGTTTCGC
*** * * * ** * * * * *
113652 ATGGAAACCTTTTCCTT-GC-CCTATTTTACCTTAAATCA-AAGTTCATTCCAT-ACATAAGACA
64 AACAAAAGCTTTT-CTTCCCACCAATTTT-TGTTGAGT-ATAAGTTCGTGCC-TCAAATAAGACA
* * * *
113713 AGCATCGATTCTTGTAA-CAGT-CTCAATTC-TTTTCAA
125 AACATGGATTCTAGTAATGA-TCCTC-ATTCATTTTCAA
* * * * * *
113749 GATT-GGAAGCCA-AAACACA-T-TTC-CTTTATTAGGATACAAGACATTGATGCTTTGGTGTCG
1 GATTAGGCA-CCATAAACACAGTCTTCTCATT-TT-GGATACATGATATTGAAGCTTTGGTTTCG
* * * * * *
113809 CAAGAAAAGCTTTTCTTTCCACC-GTTTTT-TAT-AGAATCAAGGTTTGT-CTCTTAAATAAGAC
63 CAACAAAAGCTTTTCTTCCCACCAATTTTTGT-TGAGTAT-AA-GTTCGTGC-CTCAAATAAGAC
* * *
113870 AAACATGAATACGT-GT-ATGGATCCCCATTC-TTTTCAA
124 AAACATGGATTC-TAGTAAT-GATCCTCATTCATTTTCAA
* * *
113907 GATTGGGCACCATAAACATAGTCTGCTCATTTTGG-TACATGATATTGAAGCTTTGGTTTCGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * *
113971 CAAAGGCTTTT-TTCCCACCAATTTTTGTTGAGTATAAGTTTGTGCCTCAAATTAGACAAACATG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * **
114035 GGTTCTAGTAATGATCTTCATTCATTTTGTA
131 GATTCTAGTAATGATCCTCATTCATTTTCAA
* * * * * * * ** * *
114066 -ATTAGGCACTATAAACACATTCTTCTC-TTTAGGATAAATGATACTGATGATTTTCTTTTGCAT
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
** * ** * ** * * * * * * *
114129 GGAAACCTTTTCTTTGC-CCTATTTTCCCTTAAATCA-AAGTTCATTCCTTACATAAGACAAGCA
66 CAAAAGCTTTTCTTCCCACCAATTTT-TGTTGAGT-ATAAGTTCGTGCCTCAAATAAGACAAACA
* *
114192 TCGATTCTCA-TAA-CAGT-CTCAATTC-TTTTCAA
129 TGGATTCT-AGTAATGA-TCCTC-ATTCATTTTCAA
* * * * * * *
114224 GATT-GGAAGCCA-AAACACATTC-CCTTCA-TTAGGATACAAGACATTGATGCTTTGGTGTT-G
1 GATTAGGCA-CCATAAACACAGTCTTC-TCATTTTGGATACATGATATTGAAGCTTTGGT-TTCG
* * ** * * * * * *
114284 CAAGAAAAGTTTTTCTTTTCACC-GTTTTTGAT-AGAATCAAAGTTTGT-CTCTTAAATAAGAGA
63 CAACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTAT--AAGTTCGTGC-CTCAAATAAGACA
* *
114346 AACATGAATACGT-GTACA-GATGCC-CATTC-TTTTCAA
125 AACATGGATTC-TAGTA-ATGAT-CCTCATTCATTTTCAA
* * * * * * *
114382 GATTGGGCATCATAAACATAGTCTTCTCA-TTTGGATAAACGATATTGAAGTTTTGGCTTCGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * * * * * *
114446 GAAAGGCTTTT-TTCCCAGCAGTTTTTGTTGAGTCTAAGTTCATCCCTCAAATGAGACAAACATG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * * * **
114510 GGTTCTAGTAATAATCTTCTTTCATTTT-GT
131 GATTCTAGTAATGATCCTCATTCATTTTCAA
* ** * * * * * * ** *
114540 GATTAGG-AAC-TCAAATGCATTCTCCTCA-TTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 GATTAGGCACCAT-AAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCA
* * * ** * * * * ** * *
114602 TCGAAATCTTTTCTTTGC-CCTATTTTCCT-TTAAAT-TCAAGTTCATTTCTTAAATAAGACAAG
65 ACAAAAGCTTTTCTTCCCACCAATTTT--TGTTGAGTAT-AAGTTCGTGCCTCAAATAAGACAAA
114664 CATGGATTCTCA-TAAT-AGTCC-CAATTC-TTTTCAA
127 CATGGATTCT-AGTAATGA-TCCTC-ATTCATTTTCAA
* * * * ** * * * * * * **
114698 GATTGGGAAGCCA-AAACAAAATC-AATGA-TTAGGATACAAGACATTGATGCTTTTGTGCCGCA
1 GATTAGGCA-CCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCA
* ** * * * *
114760 AGAAAAGCTTTTCTTTTCACC-GTTTTTGAT-AGAATCAAAATT--TGCCTCTTAAATAAGACAA
65 ACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTAT--AAGTTCGTGCCTC--AAATAAGACAA
* * ** * *
114821 ACATGAATAC-ATGTACGGATCCACATT-TTTTTCAA
126 ACATGGATTCTA-GTAATGATCCTCATTCATTTTCAA
* * * * * *
114856 GATTGGGCACCATAAACATAGTCTTCTGA-TTTGGATAAACGATATTGAAGCTTTGGTTTTGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * * *
114920 GAAAAGCTTAT-TTCCCA-C-ATGTTTTTTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACAT
66 CAAAAGCTTTTCTTCCCACCAAT-TTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACAT
* * * * * ***
114982 GGGTTCTAATCATAATCTTCATTCATTTTTGT
130 GGATTCTAGTAATGATCCTCATTCATTTTCAA
* * * * * * * * ** *
115014 GATTAGGCACTACAAACATATTCTAT-TC-TTTAGGATAAATGATATTGATGATTTTCTTTTGCA
1 GATTAGGCACCATAAACACAGTCT-TCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCA
** * * ** * * * * * * * *
115077 TGAAAATCTTTTTTTTTGC-CCTATTTTCTTTTAAATCA-AAGTTCATACCTTAAATAAGACAAG
65 ACAAAAGC-TTTTCTTCCCACCAATTTT-TGTTGAGT-ATAAGTTCGTGCCTCAAATAAGACAAA
* * * ** *
115140 CATCGATTCTCGCAACAAT-CTCCATTC-TTTTC-T
127 CATGGATTCTAGTAATGATCCT-CATTCATTTTCAA
* * * * * * * * *
115173 GATTGGGAAACCA-AAACACATTC-CCTTCA-TTAGGATACAAGACATTGATGCTTTGGTGTCGC
1 GATTAGG-CACCATAAACACAGTCTTC-TCATTTTGGATACATGATATTGAAGCTTTGGTTTCGC
* * * * * * ** * * *
115235 AAGAAAAGCTTTTCTTTCCACC-GTTTTTGAT-AGAATCAAAGTTTGTTTCTTAAATATGGCAAA
64 AACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTAT--AAGTTCGTGCCTCAAATAAGACAAA
* * * ** *
115298 CAAGAATACTTA-TACGGATCCCCATTC-TTTTCAA
127 CATGGATTC-TAGTAATGATCCTCATTCATTTTCAA
* * ** * * * *
115332 GTTTGGGCACCATAAACGTAGTCTTCTCA-CTTGGATACACGATATTGAAGCTTTGGTTTTGCCA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * *
115396 GAAAGGCTTTT-TTCCCACCAATTTTTGTTGAGTCTAAGTTCGTGCCTCAAATGAGACAAACATT
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACA-T
* * * **
115460 GG-TTTTAGTACTGATCTTCATAT-ATTTT-GT
130 GGATTCTAGTAATGATCCTCAT-TCATTTTCAA
* * * * * ** *
115490 GATTAGGCACTATAAACACATTCTCCTC-TTTAT-GATAAATGATATTGATA-ATTTTCTTTTGC
1 GATTAGGCACCATAAACACAGTCTTCTCATTT-TGGATACATGATATTGA-AGCTTTGGTTTCGC
* * * ** * * * * ** *
115552 ATCAAAATCTTTTATTTGC-CCTATTTTCCT-TTAAATCA-AAGTTCATATCTTAAATAAGACAA
64 AACAAAAGCTTTTCTTCCCACCAATTTT--TGTTGAGT-ATAAGTTCGTGCCTCAAATAAGACAA
* * * **
115614 GCATCGATTCTCGTAACAAT-CTCCATTC-TTTTCAA
126 ACATGGATTCTAGTAATGATCCT-CATTCATTTTCAA
* * * * * * * * *
115649 CATTGGGAAGCCA-AAACACATTC-TCTTCA-CTAGGATACAAGACATTGATGCTTTGGTGTT-G
1 GATTAGGCA-CCATAAACACAGTCTTC-TCATTTTGGATACATGATATTGAAGCTTTGGT-TTCG
* * * * ** *
115710 CAAGAAAAGCTTTTCTTTCCACC-ATTTTTGATG-GAATCAAAGTTTAT-CTCTTAAATAAGACA
63 CAACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTAT--AAGTTCGTGC-CTCAAATAAGACA
* * * ** *
115772 AACAAGAATACTTA-TACGGATCCCCATTC-TTTTCAA
125 AACATGGATTC-TAGTAATGATCCTCATTCATTTTCAA
* * * * ** * *
115808 -ATTGGGCACCATAAACATAGCCTTGTCA-CGTGGATACACGATATTGAAGCTTTGGTTTTGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * ** * *
115871 GAAATGCATTT-TTCCCACCAATTTTTGTAAAGTCTAAGTTCGTACCTCAAATAAGACAAACATG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * **
115935 GGTTCTAGTAATGATCTTCATTCATTTT-GG
131 GATTCTAGTAATGATCCTCATTCATTTTCAA
* * * ** * * ** * * * * ** * *
115965 GATTAGGAACTACAAATGCATTCTCCTCA-TTAAGATAAATGATAATGATGATTTTCTTTTGCAT
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
** * * ** * * * * * * *
116029 GGAAATCATTTCTTTGC-CCTATTTTCCT-TTAATTCA-AAGTTCATTCCTTAAATAAGATAAGA
66 CAAAAGCTTTTCTTCCCACCAATTTT--TGTTGAGT-ATAAGTTCGTGCCTCAAATAAGACAA-A
* * *
116091 -ATTGATTCTCA-TAA-CAGT-CTCCATTC-TTTTCAT
127 CATGGATTCT-AGTAATGA-TCCT-CATTCATTTTCAA
* * * * * * * ** * *
116124 GATTGGGAAGCCA-ATACACA---TTCCCATCGTTAGGATACAAGAAATTGATTCGTTGGTGTCG
1 GATTAGGCA-CCATAAACACAGTCTTCTCAT--TTTGGATACATGATATTGAAGCTTTGGTTTCG
* * ** * * * * ** * *
116185 CAAGAAAAGCTTTTCTTTCCA-CTGTTTTGGAT-AGAATCAAAGTTTGTTTCTTAAA-ATAGAAA
63 CAACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTAT--AAGTTCGTGCCTCAAATA-AGACA
* * ** * *
116247 AACATGAATACGT-GTACGGATCCCCATTC-TTTTCTA
125 AACATGGATTC-TAGTAATGATCCTCATTCATTTTCAA
* * * *
116283 GATTAGGCACCATAAACAAAGTCTTCTC-GTTTGGATACACGATATTGAAGCTTTGGTTTTGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * ** *
116347 -GAAAGGTTTT-TTCCCACCAATTTTTGTCGAGTCGAAGTTCGTGCCTCAAATGAGACAAACATG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * * * **
116410 GGTTGTAGTAACGATCTTCATTCATTTT-GT
131 GATTCTAGTAATGATCCTCATTCATTTTCAA
* * * * * * * * ** *
116440 GATTAGACACTATAAACACATTCTCCGCA-TTAGGATAAATGATATTGATA-ATTTCCTTTTGCA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGA-AGCTTTGGTTTCGCA
*** * ** ** * * * * * *
116503 TGGAAATC-TTTCTTTGC-CTTATTTTCCT-TTAAATCA-AAGTTCATTCCTTAAATAAGACAAG
65 ACAAAAGCTTTTCTTCCCACCAATTTT--TGTTGAGT-ATAAGTTCGTGCCTCAAATAAGACAAA
* * *
116564 CATTGATTCTCGTAA-CAGT-CTCAATTC-TTTTCAA
127 CATGGATTCTAGTAATGA-TCCTC-ATTCATTTTCAA
* * * * * * * * *
116598 GATTGGGAAGCCA-AAACACATTC-CCTTCA-TTAGGATACAAGACATTGATGCTTTGGTGTCGC
1 GATTAGGCA-CCATAAACACAGTCTTC-TCATTTTGGATACATGATATTGAAGCTTTGGTTTCGC
* * * * * * * *
116660 AAGAAAAGCTTTTTTTTCTACCGA-TTTTGAT-AGAAACAATGTT--TGCCTCTTAAATAAGACA
64 AACAAAAGCTTTTCTTCCCACCAATTTTTGTTGAG-TATAA-GTTCGTGCCTC--AAATAAGACA
* * *
116721 AACATGAATACGTA-TAAGGATCCTCATTC-TTTTCAA
125 AACATGGATTC-TAGTAATGATCCTCATTCATTTTCAA
* * ** * * * *
116757 GATTGGGCACCATATACTTAGTCTTTTCA-TTTGGATACACGGTATTGAAGCTATGGTTTCGCAA
1 GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
* * * * * * * * ** *
116821 GAAAGGATTTT-TTCCCACCAATTTTTGTTCAGTCTATGTTTGTTCCTCAAATGCGACAAACTTG
66 CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
* * * **
116885 GGTTCTCGTAATGATCTTCAAACATTTTGC-A
131 GATTCTAGTAATGATCCTCATTCATTTT-CAA
116916 -ATTAGGCACCATAAACACA
1 GATTAGGCACCATAAACACA
116935 TTCTCTGTTT
Statistics
Matches: 2372, Mismatches: 741, Indels: 465
0.66 0.21 0.13
Matches are distributed among these distances:
155 4 0.00
156 24 0.01
157 288 0.12
158 1035 0.44
159 892 0.38
160 73 0.03
161 49 0.02
162 7 0.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (161 bp):
GATTAGGCACCATAAACACAGTCTTCTCATTTTGGATACATGATATTGAAGCTTTGGTTTCGCAA
CAAAAGCTTTTCTTCCCACCAATTTTTGTTGAGTATAAGTTCGTGCCTCAAATAAGACAAACATG
GATTCTAGTAATGATCCTCATTCATTTTCAA
Found at i:115767 original size:159 final size:158
Alignment explanation
Indices: 113705--137511 Score: 4954
Period size: 159 Copynumber: 151.4 Consensus size: 158
113695 CATTCCATAC
* * * *
113705 ATAAGACAAGCATCGATTCTTGTAACAGTCTCAATTCTTTTCAAGATT-GGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * *
113768 TT-TCCTTTATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
113832 GTTTTTTATAGAATCAAGGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* *** * * *
113863 ATAAGACAAACATGAATACGT-GTATGGATCCCCATTCTTTTCAAGATTGGGCACCATAAACATA
1 ATAAGACAAACATG-ATTC-TCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * * *
113927 GTCTGC-TCATTTTGG-TACATGATATTGAAGCTTTGGTTTCGCAACAAAGGCTTTT-TTCCCAC
64 TTCT-CTTCA-TTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* *
113989 CAATTTTTG-TTGAGT-ATAAGTTTGTGC-CTCAA
127 C-ATTTTTGATTGAATCA-AAGTTTGT-CTCTTAA
* * * ** * ** * * *
114021 ATTAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTTGTA-ATTAGGCACTATAAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
114085 TTCT-TCTCTTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGGAAACCTTTTCTTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
* *** * *
114147 CTATTTTCCCTTAAATCAAAGTTCAT-TC-CTTAC
126 CCATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * *
114180 ATAAGACAAGCATCGATTCTCATAACAGTCTCAATTCTTTTCAAGATT-GGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
114243 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGTTTTTCTTTTCACCG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
114308 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * *
114338 ATAAGAGAAACATGAATACGT-GT-ACAGATGC-CCATTCTTTTCAAGATTGGGCATCATAAACA
1 ATAAGACAAACATG-ATTC-TCGTAACA-AT-CTCCATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * *
114400 TAGTCT-TCTCATTTGGATA-AACGATATTGAAGTTTTGGCTTCGCAAGAAAGGCTTTT-TTCCC
62 CATTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC
* * * ** * *
114462 AGCAGTTTTTG-TTGAGTCTAAGTTCATCCCTCAA
125 ACCA-TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * ** * **
114496 ATGAGACAAACATGGGTTCTAGTAATAATCTTCTTTCATTTT-GTGATTAGGAA-C-TCAAATGC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCAT-AAACAC
* * ** * *
114558 ATTCTCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATCG-AAATCTTTTCTTTGCC
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-CC
* *** * ** *
114621 -CTATTTTCCTTTAAATTC-AAGTTCATTTCTTAA
125 ACCATTTTTGATTGAA-TCAAAGTTTGTCTCTTAA
* * * * *
114654 ATAAGACAAGCATGGATTCTCATAATAGTC-CCAATTCTTTTCAAGATTGGGAAGCCA-AAACAA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCC-ATTCTTTTCAAGATTGGGAA-CCATAAACAC
* ** * * * *** *
114717 AATC-AATGATTAGGATACAAGACATTGATGCTTTTGTGCCGCAAGAAAAGCTTTTCTTTTCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
114781 GTTTTTGATAGAATCAAAATTTGCCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * *
114812 ATAAGACAAACATGAATACAT-GT-ACGGATC-CACATTTTTTTCAAGATTGGGCACCATAAACA
1 ATAAGACAAACATG-ATTC-TCGTAAC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * *
114874 TAGTCT-TCTGATTTGGATA-AACGATATTGAAGCTTTGGTTTTGCAAGAAAAGCTTAT-TTCCC
62 CATTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC
* * * * *
114936 A-CATGTTTT-TTTGAGTCTAAGTTCGTGC-CTCAA
125 ACCAT-TTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * ** * * * *** * * * * *
114969 ATGAGACAAACATGGGTTCTAATCATAATCTTCATTCATTTTTGTGATTAGGCACTACAAACATA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
115034 TTCTATTCTTTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTTTTTTGCC-
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTCTTT-CCA
* * * **
115097 CTATTTTCT-TTTAAATCAAAGTTCATAC-CTTAA
126 CCATTTT-TGATTGAATCAAAGTTTGT-CTCTTAA
* * *
115130 ATAAGACAAGCATCGATTCTCGCAACAATCTCCATTCTTTTC-TGATTGGGAAACCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGG-AACCATAAACACA
* * * * *
115193 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACCG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
115258 TTTTTGATAGAATCAAAGTTTGTTTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * **
115288 ATATGGCAAACAAGAATACT--TATACGGATCCCCATTCTTTTCAAGTTTGGGCACCATAAACGT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * *
115351 AGTCT-TCTCACTT-GGATACACGATATTGAAGCTTTGGTTTTGCCAGAAAGGCTTTT-TTCCCA
63 ATTCTCT-TCA-TTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCA
* * * *
115413 CCAATTTTTG-TTGAGTCTAAGTTCGTGC-CTCAA
126 CC-ATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * * * * * ** * * *
115446 ATGAGACAAACATTGGTTTTAGT-ACTGATCTTCATATATTTT-GTGATTAGGCACTATAAACAC
1 ATAAGACAAACA-TGATTCTCGTAAC-AATCTCCAT-TCTTTTCAAGATTGGGAACCATAAACAC
* * * ** ** ** * *
115509 ATTCTCCTCTTTATGATA-AATGATATTGATAATTTTCTTTTGCATCAAAATCTTTTATTTGCC-
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
* *** * ** *
115572 CTATTTTCCTTTAAATCAAAGTTCATATCTTAA
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* *
115605 ATAAGACAAGCATCGATTCTCGTAACAATCTCCATTCTTTTCAACATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * *
115669 TTCTCTTCACTAGGATACAAGACATTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCACCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
115734 TTTTTGATGGAATCAAAGTTTATCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * *
115764 ATAAGACAAACAAGAATACT--TATACGGATCCCCATTCTTTTCAA-ATTGGGCACCATAAACAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
** * * * * * *
115826 AGCCT-TGTCACGT-GGATACACGATATTGAAGCTTTGGTTTTGCAAGAAATGCATTT-TTCCCA
63 ATTCTCT-TCA-TTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCA
* * * *
115888 CCAATTTTTG--TAAAGTCTAAGTTCGTAC-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * ** * ** * * * **
115921 ATAAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAATGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * * ** * * * * *
115985 TTCTCCTCATTAAGATA-AATGATAATGATGATTTTCTTTTGCATGGAAATCATTTCTTTGC-CC
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
** *
116048 -TATTTTCCTTTAATTCAAAGTTCAT-TC-CTTAA
128 AT-TTTTGATTGAA-TCAAAGTT--TGTCTCTTAA
* * * * *
116080 ATAAGATAAGA-ATTGATTCTCATAACAGTCTCCATTCTTTTCATGATTGGGAAGCCA-ATACAC
1 ATAAGACAA-ACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACAC
* * * * * * * * *
116143 ATTCCCATCGTTAGGATACAAGAAATTGATTCGTTGGTGTCGCAAGAAAAGCTTTTCTTTCCACT
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
116208 GTTTTGGATAGAATCAAAGTTTGTTTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
116239 A-ATAGAAAAACATGAATACGT-GT-ACGGATCCCCATTCTTTTCTAGATTAGGCACCATAAACA
1 ATA-AGACAAACATG-ATTC-TCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * *
116301 AAGTCT-TCTCGTTTGGATACACGATATTGAAGCTTTGGTTTTGCAAG-AAAGGTTTT-TTCCCA
62 CATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCA
* * * * *
116363 CCAATTTTTG-TCGAGTCGAAGTTCGTGC-CTCAA
126 CC-ATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * * * * ** * *
116396 ATGAGACAAACATGGGTTGTAGTAACGATCTTCATTCATTTT-GTGATT-AGACACTATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGA-ACCATAAACAC
** ** ** * * *
116459 ATTCTCCGCATTAGGATA-AATGATATTGATAATTTCCTTTTGCATGGAAATC-TTTCTTTGCC-
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
116521 TTATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
126 CCATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * *
116554 ATAAGACAAGCATTGATTCTCGTAACAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
116618 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAGCTTTTTTTTCTACCG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC-
* * * *
116683 A-TTTTGATAGAAACAATGTTTGCCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
116713 ATAAGACAAACATGAAT-ACGTATA-AGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACT
1 ATAAGACAAACATGATTCTCGTA-ACA--ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * * * * *
116775 TAGTCTTTTCATTTGGATACACGGTATTGAAGCTATGGTTTCGCAAGAAAGGATTTT-TTCCCAC
62 CATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* * * * *
116839 CAATTTTTG-TTCAGTCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * *
116871 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** * *
116934 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
116996 TTATTTTCCTTTAAATCAAA----G-CTC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * *
117020 AT-----AATC--GATTCTCGCAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAT
1 ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACAT
* * * * * * * *
117077 TCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGT
65 TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCAT
* *
117142 TTTCGATAGAATCAAAGTTTGTCTCTTAA
130 TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
117171 ATAAGACAAACATGAATACT--TATACGAATCCCCATTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * ** *
117234 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCACAAGAAACA-C-ATT-TTTCCG
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCC-
* * * * * *
117295 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
125 ACCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
117329 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** ** * * * *
117391 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCAG
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* *** *
117455 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * **
117487 ATAAGGCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAATGCA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * **
117551 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTTGCAAGAAAAGCTTTTCTTTCCATTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
117616 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
117646 ATAAAACAAACATGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * *
117709 AGTCTTTTCATTTGGATACACAG-TTTTGAAGCTTTGGTTTTGAAAGAAAGGATTTT-TTTCCTG
63 ATTCTCTTCATTAGGATACA-AGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCC-A
* * * *
117772 CCAATTTTTG--TAAAGTCTAAGTTCGTAC-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
117805 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
117869 TTCTCCTCATTAGGATA-AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * ***
117932 TATTTTCCTTTAAATCAAAGTTCAAAC-CTTAA
127 CATTTTTGATTGAATCAAAGTT-TGTCTCTTAA
* * * *
117964 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * ** * *
118028 TT-TCCTTCATTAGGATACATGACATTGAAGCTTTTGTGTTATAAGAAAAGCTTTTGTTTCCAAC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
118092 ATTTTTCATAGAATCAAAGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * * *
118123 AAAAGACAAACCTGAATACTCAT-ACTAATCCCCATTCTTTACAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * *
118187 ATCT-TCTCAATAGGATACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTT-TTCCCACT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC-
* * * ** *
118250 AATTTTTG--TAAATTCTAAGTCCGTAC-CTGAA
127 CATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * * ** * * * *
118281 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTTT-GGGATTAGGAACAACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * *
118345 TTCTCCGCATTACGATA-AAGGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
118408 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
118440 ATAAGACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * **
118504 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
118569 TTTTTGATAGAATCAATGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
118599 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * ** *
118662 AGTCT-TTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGAATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
118725 AATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** ** * * *
118756 ATGCGACAAACTTGCGTTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAACACA
1 ATAAGACAAACATG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
118820 TTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
118882 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
118906 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC-TAGACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * *
118968 TTCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
119033 TTTTTGATAGAATCAAAGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
119063 ATAAGACAAACATGAATACT--TATACGGATCCCCATTCTTTTCATGATT-GGCACCATAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
119125 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-GTT-TTTCCA
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCCA
* * * *
119186 GCCAATTTTG-GTAAAGT-ATAAGTTTGTAC-CTCAA
126 -CCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * * ** * *** * * *
119220 ATGAGATAAACACGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTACAAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACACA
* ** * ** ** * *
119284 TTCTCCTCATTAGGATA-GTGATATTAATAATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCA-
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-CCAC
* *** *
119346 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * *
119378 ATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * ** * * * * * *
119442 ATCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGTAAGAAAAGCTTTCCTTTCCGCAA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
119507 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
119537 ATAAGACAAACATGAAT-ACGTATACGAATC-CTTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * * *
119600 AGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTT--AACAAAAGGATTTT-TTTCCCG
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAA-GCTTTTCTTT-CCA
* * * *
119662 CCAATTTTTG--TAAAGTCTAAGTTCGTGC-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
119695 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * ** * * *
119759 TTCTCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTT--ACC
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
*** *
119821 TTATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
128 --ATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* *
119854 ATAAGACAAGCATTGATTCTCGTAACAGTCT-CATTTCTTTTCAAGATTGGGAAGCCA-AAACAC
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCA-TTCTTTTCAAGATTGGGAA-CCATAAACAC
* * * * * * *
119917 ATTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTTTTTTCTACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
119982 -TATTTTGATGGAAACAATGTTTGCCTCTTAA
128 AT-TTTTGATTGAATCAAAGTTTGTCTCTTAA
** * * * * *
120013 ATAAGATGAACATGAAT-ACGTATA-AGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACT
1 ATAAGACAAACATGATTCTCGTA-ACA--ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * * * *
120075 TAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGATTTT-TTCCCAC
62 CATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** * * *
120139 CAATTTTTG-TTCAGCCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** * *
120171 ATGCGACAAACTTGGGTTCTCGTCATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
** * * * ** * * *** * *
120234 AAACATTTTGCAATTAGGCACCATA-AACACATTCTCTGTTTTAGGATATATG-ATACTGATGAT
63 ATTC-TCTT-C-ATTAGG----ATACAAGATATT-GATGCTTT-GG-T-TTTGCA-AGAAAAGCT
* ** ** * **
120297 TTTCTTTTGCATGAAATCTTTTCTTTG--CCTTA-TTT-TC-CTTTAA
116 TTTC-TTTCCA--CCAT-TTTTGATTGAATCAAAGTTTGTCTC-TTAA
* * * * *
120340 ATCAAAGCTCATA-ATCGATTCTCGCAACAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAAC
1 AT--AAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAAC
* * * * * * * *
120403 ACATTCTGTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCG
61 ACATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCA
* * *
120468 CCGTTTTCGATAGAATCAAAGTTTGTCTCTTAA
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * *
120501 ATAAGACAAACATGAATACT--TATACGAATCCCCTTTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
120564 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-ATT-TTTCCG
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCC-
* * * * * *
120625 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
125 ACCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
120659 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** ** * * **
120721 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGCGTGGAAATCTTTTCTTT--GT
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** *
120783 CGTATTTTCCTTTATATCAAAGTTCAT-TC-CTTAA
127 CAT-TTTTGATTGA-ATCAAAGTT--TGTCTCTTAA
* * * * *
120817 ATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * **
120881 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
120946 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
120976 ATAAAACAAACATGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * *
121039 AGTCTTTTCATTTGGATACACAG-TTTTGAAGCTCTGGTTTTG-AATGAAAGGATTTT-TTTCCT
63 ATTCTCTTCATTAGGATACA-AGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTTCC-
* * * * * *
121101 GCCAATTTTTG--TAAAGTCTAGGTTCGTAC-CTCAA
125 ACC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
121135 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
121199 TTCTCCTCATTAGGATA-AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * ***
121262 TATTTTCCTTTAAATCAAAGTTCAAAC-CTTAA
127 CATTTTTGATTGAATCAAAGTT-TGTCTCTTAA
* * * *
121294 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * *** *
121358 TT-TCCTTCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
121422 AATTTTCATAGAATCAAAGTTTGTCTATT-A
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
121452 ATAAAGACAAACCTGAATACTCAT-ACTAATCCCCATTCTTTACAGGATTTGGCACCGTAAACAT
1 AT-AAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * *
121516 AATCT-TCTCAATAGGATACATGATATTGATGCTTTGATTTCGCAAGAAACGCTTTT-TTCCCAC
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* * * * ** *
121579 TAATTTTTG--TAAATTCTACGTCCGTAC-CTCAA
127 -CATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** ** * ** * * * *
121611 ATGAGACAAACATGGGTTCTAGTAATGATCTTTATTCACTTT-GGGATTAGGAACAACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * * *
121675 TTCTCCGCATTACGATA-AAGGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTAGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTT-TCCAC
* *** *
121738 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
121770 ATAAGACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * * **
121834 TTCCCTTCATAAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
121899 TTTTTGATAGAATCAATGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * **
121929 ATAAGACAAACAAGAAT-ACGTATACGGATC-CTCATTCTTTTTAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * ** *
121992 AGTCT-TTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGAATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
122055 AATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** ** * * *
122086 ATGCGACAAACTTGCGTTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAACACA
1 ATAAGACAAACATG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
122150 TTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
122212 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
122236 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
122298 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
122363 TTTTTGATAGAATCAATGTTTGCCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
122393 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * * * *
122456 AGTCTTTTCATTTGGATACACGGTATTGACGCTCTGGTTTCGCAAGAAAGGATTTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * *
122520 AATTTTTG-TTGAGT-ATATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCA-AAGTTTGTCT-CTTAA
** * * ** * ** ** * * * *
122551 ATGCGACAAACTTTCG-TTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAATAC
1 ATAAGACAAAC-AT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACAC
* * *** * *
122614 ATTCTCTGT-TTTAGGATA-AATGATATTGATGATTTTCATTTGCATGAAAATCTTTTCTTTGCC
63 ATTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CC
** ***
122677 -TTATTTTCCTTTGAATCAAA----GT-TC----
125 ACCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * *
122701 AT-A-ACAAGCATCGATTCTCGCAATAGTCTCCATTCTTTTCAAGATTTGGAAGCCA-AGACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * * *
122763 TTCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGTAGGAAAAGCTTTTCTTTTCGCCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
122828 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
122858 ATAAGACAAACATGAATACT--TATACGGATCCCCATTCTTTTCATGATTGGGCACCATAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
122921 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-GTT-TTTCCA
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCCA
* * * * *
122982 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
126 -CCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * * * *
123016 ATGAGATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTACAAGCGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACACA
** * * ** ** ** * * * *
123080 TTCTCCACATTAAGATA-AATGATATTAATAATTTTCTTTTGCTTGGAAATCCTTTCTTTGCC-G
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
123143 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* ** * * * *
123175 ATAAGGCAAGGATCGATTCTCATAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * ** * * * *
123239 ATCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
123304 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * **
123334 ATAAGTCAAACACGAAT-ACATATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * * * * *
123397 AGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTCGAAAGAAATGATTTT-TTTCCCGC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* * * * *
123461 CAAATTTTG--TAAAGTCTAAGTTCGTAC-CTCAA
127 C-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
123493 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * ** * * * *
123557 TTCTCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * **
123620 TATTTTCCTTTAAATCAAAGTTCATAC-CTTAA
127 CATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * * *
123652 ATAAGACAAGCATCGATTTTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * ** *
123716 TT-TCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCACAAGAAAAGCTTTTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
123780 ATTTTTGATAGAATCAAAGTTTCTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
123811 AAAAGACAAACCTAATTACTCAT-ACTAATCCCCATTCTTTTCAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATGATT-CTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * * *
123875 ATCT-TCTCAATAGGATACATGATATTAATGCTTTGGTTTCGCAAGAAATGCCTTT-TTCCCACT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC-
* * * * *
123938 AATTTTTG--TAAATTCTAAGTTCGTAC-CTCAA
127 CATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * * ** * * ** * * * *
123969 ATGAGACAAACATGGGTTGTAGTAATGATCTTCATTCACTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * * *
124033 TTCTCCGCATTACGATA-AATGATATTGATGATTTCCTTTCGCATGGAAATCTTTTCTTT--TCC
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
** *
124095 -TTGCTTTCCTTTAAATCAAAGTTCAT-TCT-TTAA
128 ATT--TTT-GATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
124128 ATAAGATAAGCATTGATTTTCGTAACAGTCTCAATTCTTTTCAAGATTGCGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * * *
124192 TTCGCTTCATTAGGATACAAAACATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTTTTTTCCACC
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTCTTTCCACC
* * * * *
124257 GTTTTTGATAGAATCAATGTTTATCTCTTCA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
124288 ATAAGACAAACATGAAT-GCGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * *
124351 AGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTTGTAA-AAAAGGATTTT-TTCCCAC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAA-GCTTTTCTTTCCAC
* * * *
124414 CAATTTTTG-TTGAGT-TATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** ** ** * * *
124445 ATGCGACAAACTTGCGTTCTTGTAATGATC-CTCAAACATTTT-GTGATTAGGCACTATAAACAC
1 ATAAGACAAACATG-ATTCTCGTAACAATCTC-CATTC-TTTTCAAGATTGGGAACCATAAACAC
* * * ** * * *
124508 ATTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTACATGAAAATCTTTTCTTTGCC
63 ATTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CC
** *** *
124571 -TTATTTTCCTTTAAATCAAA----GT-TC----
125 ACCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
124595 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC-TAGACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * *
124657 TTCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
124722 TTTTTGATAGAATCAAAGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
124752 ATAAGACAAACATGAATACT--TATACGGATCCCCATTCTTTTCATGATT-GGCACCATAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * ** *
124814 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCACAAGAAACA-C-GTT-TTTCCA
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCCA
* * *
124875 GCCAATTTTGGA--AAAGT-ATAAGTTTGTAC-CTCAA
126 -CC-ATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * * ** * *** * * *
124909 ATGAGATAAACACGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTACAAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACACA
* ** * ** ** * *
124973 TTCTCCTCATTAGGATA-GTGATATTAATAATTTTCTTTTGCATTG-AAATCTTTTCTTTGCCA-
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-CCAC
* *** *
125035 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * *
125067 ATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * * *
125131 ATC-CTTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCT
64 TTCTC-TTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
125195 ATTTTTGATAGAATCAAAGTTTATCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
125226 ATAAGACAAACATGAAT-ACGTATACGAATC-CTTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * * *
125289 AGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTT--AACGAAAGGATTTT-TTTCCCG
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTT-CCA
* * * *
125351 CCAATTTTTG--TAAAGTCTAAGTTCGTGC-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
125384 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * ** * * * *
125448 TTCTCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGTC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
125511 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * *
125543 ATAAGACAAGCATTGATTCTCGTAACAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
125607 TTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
125670 TATTTTGATAGAAACAATGTTTGCCTCTTAA
129 T-TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
125701 ATAAGACAAACATGAAT-ACGTATA-AGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACT
1 ATAAGACAAACATGATTCTCGTA-ACA--ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * * * *
125763 TAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGATTTT-TTCCCAC
62 CATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** * * *
125827 CAATTTTTG-TTCAGCCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * * *
125859 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACGC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** * *
125922 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
125984 TTATTTTCCTTTAAATC-AA---TG-CTC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
126008 AT-----AATC--GATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAT
1 ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACAT
* * * ** * * * *
126065 TCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCACAGGAAAAGCTTTTCTTTTCGCCGT
65 TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCAT
*
126130 TTTTGATAGAATCAAAGTTTGTCTCTTAA
130 TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
126159 ATAAGACAAACATGAATACT--TATACGAATCCCCATTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * * ** * * *
126222 AGTCT-TCTCAGTCGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-ATT-TTTCCG
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCC-
* * * * * *
126283 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
125 ACCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
126317 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTTGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** *** * * *
126379 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGTGTGGAAATCTTTTCTTTGTC-
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
126442 GTATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
126 CCATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
126475 ATAAGGCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * **
126539 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
126604 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * **
126634 ATAAAACAAACAGGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * *
126697 AGTCTTTTCATTTGGATACATAG-TTTTGAAGCTCTGGTTTTG-AATGAAAGGATTTT-TTTCCT
63 ATTCTCTTCATTAGGATACA-AGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTTCC-
* * * * * *
126759 GCCAATTTTTG--TAAAGTCTAGGTTCGTAC-CTCAA
125 ACC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * ** * ** * * * *
126793 ATAAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
126857 TTCTCCTCATTAGGATA-AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * ***
126920 TATTTTCCTTTAAATCAAAGTTCAAAC-CTTAA
127 CATTTTTGATTGAATCAAAGTT-TGTCTCTTAA
* * * * *
126952 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTGTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * *** *
127016 TT-TCCTTCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
127080 ATTTTTCATAGAATCAAAGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
127111 AAAAGACAAACCTGAATACTCAT-ACTAATCTCCATTCTTTACAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * * *
127175 ATCT-TCTCAATAGGATACATGATATTGACGCTTTGGTTTCGCAAGAAATGCTTTT-TTCCCACT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * ** *
127238 AATTTTG--TAAATTCTAAGTCCGTAC-CTCAA
128 ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** ** * ** * * * *
127268 ATGAGACAAACATGGGTTCTAGTAATGATCTTTATTCACTTT-GGGATTAGGAACAACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * ** *
127332 TTCTCCGCATTACGATA-AAGGATATTGATGATTTCCTTTTGCATGGAAATCTTCACTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
127395 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
127427 ATAAGACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * **
127491 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
127556 TTTTTGATAGAATCAATGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
127586 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * ** *
127649 AGTCT-TTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGAATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
127712 AATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** ** * * *
127743 ATGCGACAAACTTGCGTTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAACACA
1 ATAAGACAAACATG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
127807 TTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
127869 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
127893 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
127955 TTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
128018 TATTTTGATAGAAACAATGTTTGCCTCTTAA
129 T-TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
128049 ATAAGACAAACATGAAT-ACGTATA-AGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACT
1 ATAAGACAAACATGATTCTCGTA-ACA--ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * * * *
128111 TAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGATTTT-TTCCCAC
62 CATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** * * *
128175 CAATTTTTG-TTCAGCCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * *
128207 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** ** *
128270 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCGTG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
128332 TTATTTTCCTTTAAATC-AA---TG-CTC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
128356 AT-----AATC--GATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAT
1 ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACAT
* * * * * * * * *
128413 TTTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGT
65 TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCAT
*
128478 TTTTGATAGAATCAAAGTTTGTCTCTTAA
130 TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * *
128507 ATAGGACAAACATGAATACT--TATACGAATCCCCATTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
128570 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-ATT-TTTCCG
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCC-
* * * * * *
128631 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
125 ACCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
128665 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** *** * * *
128727 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGTGTGGAAATCTTTTCTTTGTC-
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
128790 GTATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
126 CCATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
128823 ATAAGGCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * **
128887 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
128952 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * **
128982 ATAAAACAAACAGGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * *
129045 AGTCTTTTCATTTGGATACATCG-TTTTGAAGCTCTGGTTTTG-AATGAAAGGATTTT-TTTCCT
63 ATTCTCTTCATTAGGATACA-AGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTTCC-
* * * * * *
129107 GCCAATTTTTG--TAAAGTCTAGGTTCGTAC-CTCAA
125 ACC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
129141 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
129205 TTCTCCTCATTAGGATA-AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * ***
129268 TATTTTCCTTTAAATCAAAGTTCAAAC-CTTAA
127 CATTTTTGATTGAATCAAAGTT-TGTCTCTTAA
* * * *
129300 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * *** * *
129364 TT-TCCTTCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACA
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
129428 ATTTTTCATAGAATCAAAGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
129459 AAAAGACAAACCTGAATACTCAT-ACTAATCTCCATTCTTTACAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * *
129523 ATCT-TCTCAATAGGGTACATGATATTGATGCTTTGGTTTCGCAAGAAATGCTTTT-TTCCCACT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC-
* * * ** *
129586 AATTTTTG--TAAATTCTAAGTCCGTAC-CTCAA
127 CATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* ** * ** ** * ** * * * *
129617 ATGAGACAAACATGGGCTCTAGTAATGATCTTTATTCACTTT-GGGATTAGGAACAACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * *
129681 TTCTCCGCATTACGATA-AAGGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
129744 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
129776 ATAAGACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * **
129840 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
129905 TTTTTGATAGAATCAATGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
129935 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * ** *
129998 AGTCT-TTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGAATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
130061 AATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** ** * * *
130092 ATGCGACAAACTTCCATTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
130156 TTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
130218 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
130242 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * *
130304 TTCCCTTCATTAGGATACAAGACATTGATGCTTTAGTGTCGCAAGAAAAGCTTTT-TTTCTACC-
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
130367 TATTTTGATAGAAACAATGTTTGCCTCTTAA
129 T-TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
130398 ATAAGACAAACATGAAT-ACGTATA-AGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACT
1 ATAAGACAAACATGATTCTCGTA-ACA--ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACA
* * * * * * * * * * *
130460 TAGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAGAAAGGATTTT-TTCCCAC
62 CATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** * * *
130524 CAATTTTTG-TTCAGCCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * *
130556 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** * *
130619 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
130681 TTATTTTCCTTTAAATC-AA---TG-CTC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
130705 AT-----AATC--GATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAT
1 ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACAT
* * * * * * * *
130762 TCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGT
65 TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCAT
*
130827 TTTTGATAGAATCAAAGTTTGTCTCTTAA
130 TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * *
130856 ATAGGACAAACATGAATACT--TATACGAATCCCCATTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
130919 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-ATT-TTTCCG
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCC-
* * * * * *
130980 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
125 ACCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
131014 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** ** * * * *
131076 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGCGTGGAAATCTTTTCTTTGCAG
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* *** *
131140 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
131172 ATAAGGCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * **
131236 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCATTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
131301 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
131331 ATAAAACAAACATGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * *
131394 AGTCTTTTCATTTGGATACACAG-TTTTGAAGCTCTGGTTTTG-AATGAAAGGATTTT-TTTCCT
63 ATTCTCTTCATTAGGATACA-AGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTTCC-
* * * * * *
131456 GCCAATTTTTG--TAAAGTCTAGGTTCGTAC-CTCAA
125 ACC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
131490 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
131554 TTCTCCTCATTAGGATA-AATGATATTGGTGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * ***
131617 TATTTTCCTTTAAATCAAAGTTCAAAC-CTTAA
127 CATTTTTGATTGAATCAAAGTT-TGTCTCTTAA
* * * *
131649 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * *** *
131713 TT-TCCTTCATTAGGATACATGACATTGATGCTTTTGTGTCATAAGAAAAGCTTTTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
131777 ATTTTTCATAGAATCAAAGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
131808 AAAAGACAAACCTGAATACTCAT-ACTAATCTCCATTCTTTACAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * *
131872 ATCT-TCTCAATAGGATACACGATATTGACGCTTTGGTTTCGCAAGAAATGCTTTT-TTCCCACT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC-
* * * ** ** *
131935 AATTTTTG--TAAATTCTAAGTCCGTAGCTCAA
127 CATTTTTGATTGAA-TCAAAGTTTGTCTCTTAA
* * * ** ** * ** * * * *
131966 ATGAGACAAACATGGGTTCTAGTAATGATCTTTATTCACTTT-GGGATTAGGAACAACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * *
132030 TTCTCCGCATTACGATA-AAGGATATTGATGATTTCCTTTTGCATGGAAATCTTTTCTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** *
132093 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
132125 ATAAGACAAGCATTGATTTTCATAATAGTCTCAATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * **
132189 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCACTG
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
132254 TTTTTGATAGAATCAATGTTTGTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
132284 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * ** *
132347 AGTCT-TTCATTTGGATACACGGTATTGAAGCGTTGGTTTCGCAAGAAAGGAATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
132410 AATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** ** * * *
132441 ATGCGACAAACTTGCGTTCTTGTAATGATCTTCAAACATTTT-GTGATTAGGCACTATAAACACA
1 ATAAGACAAACATG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * *
132505 TTCTCTGT-TTTAGGATA-AATGATACTGATGATTTTCTTTTGCATGAAAATCTTTTATTTGCC-
64 TTCTCT-TCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
132567 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
132591 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCATTCCTTTCAACATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * *
132653 TTCCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAGAAAAGCTTTTTTTTCCTCCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * * *
132718 TTTTTGATAGAATCAATGTTTGCCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
132748 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * ** *
132811 AGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTCGCAAG-AAAGGATTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* ** * * *
132874 AATTTTTG-TTCAGCCTATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * *
132905 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** * *
132968 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
133030 TTATTTTCCTTTAAATC-AA---TG-CTC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * *
133054 AT-----AATC--GATTCTCGCAATAGTTTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACAT
1 ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACAT
* * * * * * * *
133111 TCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCGT
65 TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCAT
*
133176 TTTTGATAGAATCAAAGTTTGTCTCTTAA
130 TTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
133205 ATAAGACAAACATGAATACT--TATACGAATCCCCATTCATTTCAAGATTGGGCACCTTAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
133268 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-ATT-TTTCCA
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCCA
* * * * *
133329 GCCAATTTTG-GTAAAGT-ATAAGTTCGTAC-CTCAA
126 -CCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * ** * *** * * *
133363 AT-GGCATAAACATGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTATAAA-GC
1 ATAAG-ACAAACAT-GATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACAC
* * ** ** ** * * **
133425 ATTCTCCTCATTAGGATA-AATGATATTAATAATTTTCTTTTGCGTGGAAATCTTTTCTTT--GT
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* ** *
133487 CGTATTTTCCTTCAAATCAAAGTTCAT-TC-CTTAA
127 CAT-TTTTGATT-GAATCAAAGTT--TGTCTCTTAA
* * * * * *
133521 ATAAGGCAAGCACCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* ** * * * *
133585 TTCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
133650 TTTTTGATAGAGTCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * **
133680 ATAAGTCAAACACGAAT-ACGTATACGAATC-CCTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTCC-ATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * *** * * *
133743 AGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTCAAAAGAAATGATTTT-TTTCCCGC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* * * * *
133807 CAAATTTTG--TAAAGTCTAAGTTCGTAC-CTCAA
127 C-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * ** * * * *
133839 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * ** * * * *
133903 TTCTCCTCATTCGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-T
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * **
133966 TATTTTCCTTTAAATCAAAGTTCATAC-CTTAA
127 CATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * *
133998 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * ** * *
134062 TT-TCCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCACAAGAAAAGCTTCTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
134126 ATTTTTGATAGAATCAAAGTTTCTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
134157 AAAAGACAAACCTAATTACTCAT-ACTAATCCCCATTCTTTTCAGGATTTGGCACCGTAAACATA
1 ATAAGACAAACATGATT-CTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACACA
* * * * * * * * *
134221 ATCT-TCTCAATAGGATACATGATATTAATGCTTTGGTTTCGCAAGAAATGCCTTT-TTCCCAGT
64 TTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCA-C
* * * * *
134284 AATTTTTG--TAAATTCTAAGTTCGTAC-CTCAA
127 CATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * * ** * * ** * * * * *
134315 ATGAGACAAACATGGGTTCTAGTAATGATCTTCATTCACTTT-GGGATTAGGAACTACAAACGCG
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
** * * ** * * * * *
134379 TTCTCCGCATTACGATA-AATGATATTGATGATTTCCTTTCGCATGGAAATCTTTTCTTTTC-CC
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
** *
134442 -TGTTTTCCTTTAAATCAAAGTTCAT-TCT-TTAA
128 AT-TTTT-GATTGAATCAAAGTT--TGTCTCTTAA
* * * * * *
134474 ATAAGATAAGCATTGATTTTCGTAACAGTCTCAATTCTTTTCAAGATTGCGAAGCCA-AAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * *
134538 TTCGCTTCATTAGGATACAAGACATTGATGCTTTGGTGTCGTAAAAAAAGCTTTTTTTTTCCACC
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGC-TTTTCTTTCCACC
* * * *
134603 GTTTTTGATAGAATCAATGTTTGTCTCTTCA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * **
134634 ATAAGACAAACATGAAT-ACGTATACGGATC-CTCATTCTTTTCAAGATTGGGCACCATATACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * *
134697 AGTCTTTTCATTTGGATACACGGTATTGAAGCTTTGGTTTTGCAAGAAAGGATTTT-TTCCCACC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
134761 AATTTTTG-TTGAGT-TATGTTTGT-TCCTCAA
128 -ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * ** * ** * *
134791 ATGCGACAAACTTGGGTTCTCGTAATGATCTTCAAACATTTTGC-A-ATTAGGCACCATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTT-CAAGATTGGGAACCATAAACAC
* * * * * ** * *
134854 ATTCTCTGT-TTTAGGATATATGATACTGATGATTTTCTTTTGCATG-AAATCTTTTCTTTGCC-
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
** *** *
134916 TTATTTTCCTTTAAATCAAA----GT-TC----
126 CCATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * *
134940 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCACTCTTTTCAAGATTGGGAAGCC-CAGACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * * * * *
135002 TTCTCTTCATTAGGATACTAGACATTGATGCTTTGGTGTCGCAGGAAAAGCTTTTCTTTTCGCCA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* * *
135067 TTTTTGATAGAATCAAAGTTTCTCTCTTCA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * *
135097 ATAAGACAAACATGAATACT--TATACGGATCCCCATTCTTTTCATGATT-GGCACCATAATCAT
1 ATAAGACAAACATG-ATTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * ** * * *
135159 AGTCT-TCTCAGTAGGATACGTGATACTGATGCTTTGGTTTCGCAAGAAACA-C-GTT-TTTCCA
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAA-AGCTTTTCTTTCCA
* * * *
135220 GCCAATTTTG-GTAAAGT-ATAAGTTTGTAC-CTCAA
126 -CCATTTTTGATTGAA-TCA-AAGTTTGT-CTCTTAA
* * * * * ** * *** * * *
135254 ATGAGATAAACACGGGTTCTAGTAATGATCTTCATT-TATTTTGGGATTAGGAACTACAAACACA
1 ATAAGACAAACA-TGATTCTCGTAACAATCTCCATTCT-TTTCAAGATTGGGAACCATAAACACA
* ** * ** ** * * *
135318 TTCTCCTCATTAGGATA-GTGATATTAATAATTTTCTTTTGCATTG-AAATCTTTTCTTTGCC-G
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCA-AGAAAAGCTTTTCTTT-CCAC
* *** *
135380 TATTTTCCTTTAAATCAAAGTTCAT-TC-CTTAA
127 CATTTTTGATTGAATCAAAGTT--TGTCTCTTAA
* * * * *
135412 ATAAGGCAAGCATCGATTCTCGTAACAGTCTCCATTCTTTTCAAAATTGGGAAGCCA-AAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * ** * * * *
135476 ATCCCTTCATTAGGATACAAGACCTTGATGCTTTGGTGTCGCAAGAAAAGCTTTTCTTTCCGCTA
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
*
135541 TTTTTGATAGAATCAAAGTTTGTCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * **
135571 ATAAGACAAACATGAAT-ACGTATACGAATC-CTTATTCTTTTCAAGATTAGGCACCATTAACTT
1 ATAAGACAAACATGATTCTCGTA-AC-AATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * * * *
135634 AGTCTTTTCATTTGGATACACGGTTTTGAAGCTTTGGTTTT-TAACGAAAGGATTTT-TTTCCCG
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAA-GAAAAGCTTTTCTTT-CCA
* * * *
135697 CCAATTTTTG--TAAAGTCTAAGTTCGTGC-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * ** * ** * * * *
135730 ATAAGACAAACATGGGTTCTAGTAATGATCTTCATTCATTTT-GGGATTAGGAACTACAAACGCA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * ** * * *
135794 TTCTCCTCATTAGGATA-AATGATATTGATGATTTTCTTTTGCATGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * **
135857 TATTTTCCTTTAAATCAAAGTTCATAC-CTTAA
127 CATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * *
135889 ATAAGACAAGCATCGATTCTTGTAACAGTCTCCATTCTTTTCAAGATTAGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * * *** *
135953 TT-TCCTTCATTAGGATACATGACATTGATGCTTTGGTGTCATAAGAAAAGCTTTTGTTTCCACC
64 TTCT-CTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* *
136017 ATTCTTGATAGAATCAAAGTTTGTCTCTTAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * ** ** *
136048 ATAAGACAAACATGAAT-ACGTATACAGATC-CTCATTCTTTTCAAGATTGGGCCCCATTTAC-T
1 ATAAGACAAACATGATTCTCGTA-ACA-ATCTC-CATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * * * * * ** *
136110 TTGTCTTTTCATTTGGATACATGGTATTGAAGCTTTGGTTTCGCAAGAAAGGAATTT-TTCCCAC
63 AT-TCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* * * *
136174 CAATTTTTG-TTGAGTCTATGTTTGT-TCCTCAA
127 C-ATTTTTGATTGAATCAAAGTTTGTCT-CTTAA
** * * * ** * ** * ** **
136206 ATGCGACAAACTTGCGTTCTTGTAATGATCTTCAAACACTTT---G--T--G-----T--TTAGG
1 ATAAGACAAACATG-ATTCTCGTAACAATCTCCATTC-TTTTCAAGATTGGGAACCATAAACACA
* * * *** * * * ***
136257 TT-TGTT--TTAGGATA-AATGATACTGATGATTTTCCTTTGCATGAAAATCTTTTCTTTGCGTT
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
*** *
136318 ATTTTCCTTTAAATCAAA----GT-TC----
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * *
136340 AT-A-ACAAGCATCGATTCTCGCAACAGTCTCCATTCTTTTCAAGATTGGGAAGCCA-AAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAA-CCATAAACACA
* * ** * * ** * *
136402 TTCCCTTCATTAGGATACATGGCATTGATGCTTTAGTGTCACAAGAAAAGCTTTTCATTCCACCT
64 TTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCA
* *
136467 TTTTTGATAGAATCAAAGTTTATCTCTTAA
129 TTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * *
136497 ATATGACAAACATGAATACTC-TTACGTATCCCCATACTTTTCAAGAGTT-GGCACCATAAACAT
1 ATAAGACAAACATG-ATTCTCGTAAC-AATCTCCATTCTTTTCAAGA-TTGGGAACCATAAACAC
* * * *** * * ** *
136560 AGTCTTTTC-CTAGGGATACGTCATATTAATGCCTTGGTTTTGCAAG-AAAGGGTTT-TTCCTCA
63 ATTCTCTTCATTA-GGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTC-CA
* ** * *
136622 CCAATTTTTG--TAAAGTTTATGTTCATG-C-CTCAA
126 CC-ATTTTTGATTGAA-TCAAAGTT--TGTCTCTTAA
* * ** ** * * *
136655 ATGAGACAAACATAGATTCTAGTAATGATCGT-CATTCATTTT-GTGATTAGGCACTATAAACAC
1 ATAAGACAAACAT-GATTCTCGTAACAATC-TCCATTC-TTTTCAAGATTGGGAACCATAAACAC
* * * * * ** * *
136718 ATTTTCCTCTTTAGGAGA-AATGATATTGATGATTTTCTTTTGCATGAAAATCTTTTCTTTGCC-
63 ATTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCA
* * ** * **
136781 CTACTTTTCTTTAAATCAAAGTTCATAC-CTTAA
126 CCATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * * * *
136814 ATAAGACAAGCATCAATTCTCGTAATAGTCTCCATTCTCTTCAAGATTTGGGAAGCCA-AAACGC
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGA-TTGGGAA-CCATAAACAC
* * * * * * *
136878 ATTCCCTTCCTTAGGATACAAGACATTGATGCTTTGGTGTCGCAAGAAAAACTTTTCTTTCCGCC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
*
136943 GTTTTTGATAT-AATCAAA-TTATGTCTCTTAA
128 ATTTTTGAT-TGAATCAAAGTT-TGTCTCTTAA
* * * * * * ** *
136974 ATATGACAAACATGAGTACT--TATACGGATCCCCATTCTTTTCATGATTCGGTGCCATAAACAT
1 ATAAGACAAACATGA-TTCTCGTA-AC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACAC
* * * * *
137037 AGTCT-TATCATTAGGATAGAAGATATTGATGCTTTGGTTTCGCAAGAAAGGCTTTT-TTCCCAC
63 ATTCTCT-TCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCAC
* * *
137100 CAGTTTTTG--TAAAGTCTAAGTTCGTGC-CTTAA
127 CA-TTTTTGATTGAA-TCAAAGTTTGT-CTCTTAA
* * ** ** *** * * *
137132 ATGAGACAAACATGGATTCTAGTAATGATCTTGATTCTTTTTGTGA-TGAAGCACTATAAACACA
1 ATAAGACAAACAT-GATTCTCGTAACAATCTCCATTCTTTTCAAGATTG-GGAACCATAAACACA
* * * ** * ** * ** * *
137196 TTATCCTCTTTTTGATA-AATGATATTGATGATTTTCTTTTTCTTGGAAATCTTTTCTTTGCC-C
64 TTCTCTTCATTAGGATACAA-GATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTT-CCAC
* *** * **
137259 TATTTTCCTTTAAATCAAAGTTCATAC-CTTAA
127 CATTTTTGATTGAATCAAAGTTTGT-CTCTTAA
* * * * * * * * * *
137291 ACAAGACAAGCATCCATTGTCGTAA-AAGCCTCCATTATTTCCCATATTGGGAAGCCA-AAACAT
1 ATAAGACAAACAT-GATTCTCGTAACAA-TCTCCATTCTTTTCAAGATTGGGAA-CCATAAACAC
* * * * * * * * *
137354 ATTCCCTTCATTAGGATACATGACATTGCTGCTTCGGTGTCGCAAGAAATGCTTTTCTTTCCGCC
63 ATTCTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACC
* * * *
137419 ATTTTTAATAGAATCAAACTTTGTCTCTCAA
128 ATTTTTGATTGAATCAAAGTTTGTCTCTTAA
* * * * * * * * * *
137450 ATACGACAAGCGTGACTACTCAT-ACTGATCCCCATTATTTTCAAGATTGAGCACCATAAACA
1 ATAAGACAAACATGA-TTCTCGTAAC-AATCTCCATTCTTTTCAAGATTGGGAACCATAAACA
137512 TAGTCTTCTC
Statistics
Matches: 16445, Mismatches: 5604, Indels: 3199
0.65 0.22 0.13
Matches are distributed among these distances:
131 3 0.00
132 19 0.00
133 1 0.00
134 3 0.00
136 1 0.00
138 2 0.00
139 8 0.00
140 30 0.00
141 296 0.02
142 158 0.01
143 17 0.00
144 18 0.00
145 5 0.00
146 22 0.00
147 146 0.01
148 653 0.04
149 42 0.00
150 14 0.00
151 12 0.00
152 15 0.00
153 20 0.00
154 25 0.00
155 23 0.00
156 105 0.01
157 1658 0.10
158 4922 0.30
159 7135 0.43
160 837 0.05
161 130 0.01
162 6 0.00
163 4 0.00
164 12 0.00
165 13 0.00
166 2 0.00
167 2 0.00
168 17 0.00
169 8 0.00
170 15 0.00
171 34 0.00
172 10 0.00
173 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.15, T:0.37
Consensus pattern (158 bp):
ATAAGACAAACATGATTCTCGTAACAATCTCCATTCTTTTCAAGATTGGGAACCATAAACACATT
CTCTTCATTAGGATACAAGATATTGATGCTTTGGTTTTGCAAGAAAAGCTTTTCTTTCCACCATT
TTTGATTGAATCAAAGTTTGTCTCTTAA
Found at i:120239 original size:30 final size:30
Alignment explanation
Indices: 120203--120264 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
120193 TCATGATCTT
120203 CAAACATTTTGCAATTAGGCACCATAAACA
1 CAAACATTTTGCAATTAGGCACCATAAACA
120233 CAAACATTTTGCAATTAGGCACCATAAACA
1 CAAACATTTTGCAATTAGGCACCATAAACA
120263 CA
1 CA
120265 TTCTCTGTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.44, C:0.24, G:0.10, T:0.23
Consensus pattern (30 bp):
CAAACATTTTGCAATTAGGCACCATAAACA
Found at i:139213 original size:475 final size:475
Alignment explanation
Indices: 137728--141897 Score: 4743
Period size: 475 Copynumber: 8.8 Consensus size: 475
137718 AAGTTCATAC
* * * * * *
137728 CTTATCTTTTTTAAGGTATGAACATTGATTTAAAGGAAAATGGGGTAAAGAAATGATTTTCAAGC
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * *
137793 AAAATAAAATCATCAATATCATTTATCCTAATGAAGAGAATGTGGTTATAGTGCCTAATCTCAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
137858 ATGAATGAAGATCGTTACTAAAATCCTTGTTTGTCTTATTTGAGGCACGAACTTAGACTTTATAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* ** * * ** * *
137923 AATTTGG-TGGCAAAAATTCCTTTCTTACGAAATGAAAGTATCAATATGATGTATCCTAATGAAA
196 AAATTGGTTGG-AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * * *
137987 AGACTATGTTTATGGTGCCTAATCTTGAAAATAATAGGGATTAGTATGAGTATTCAGGTTTGTCC
260 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * * **
138052 TATTT-AGA-ACACAAATTAGAATTCTATCAAAAATGGTGGAATGAAAAGCTTTTCCTATGACAC
325 TATTTAAGAGACA-AACTTTG-ATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
* * * * ** * * *
138115 TAAGGCGTCAATGTCATGTATCCTAAAGAAGGTTATGTGTTTTCAGTTCCCAATTTTTAAAAGAA
388 CAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GGTTCCCAATCTTGAAAAGAA
138180 TGGAGAC-----T----AT----G
452 TGGAGACTGTTATGAGAATCGAAG
* * * * * *
138191 CTTGTCTTATTTAAGGAATGAACTTTGATTTTAAGGAAAATAGGGCACACAAAAGATTTCCATGC
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * * * *
138256 AATAGAAAACCATCAATATCATTTCTCCTAATAAGGAGAATGTGTTTATAGTGCCTTATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
** * ** * * *
138321 ATGAATGAAGATTGTTACTAGAATCCATGTTTGTTTCATTTGAGGCATAAACTGACACTTCACAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * *
138386 AAATTGGTTAGAAAAAAGCCTTTCCTGCAAAACCAAAGCATCAATATAATGTATCCTAATAAGAA
196 AAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * ** * * * *
138451 GACTGTGTTTATGGTGCCTAACCCGGAAAAGAATAGGGATTAGTATGAGTATTCGTGTTTGCCCT
261 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * *
138516 ATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAGAAAAGCTTCTCTTACGACACCAA
326 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
*
138581 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGCTTTTGGTTCCCAATCTTGAAAACAATGG
391 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGTTCCCAATCTTGAAAAGAATGG
* *
138646 AGACTGTTGTGAGAATCAAAG
455 AGACTGTTATGAGAATCGAAG
* * * * * * * *
138667 CTTGTCTTATTGAAGTTATGAACATTGATTTAAAGGAAAATGGGGCAAATAAATGATTTCCAAGT
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
138732 AAAAGAAAATCGTCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGGCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
138797 ATGAATGAAGATCATTACTAGAATCCTTGTTTGTCTCAATTGAGGCATGAACTTAGACTTTGCAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * *
138862 AAATTGGTTGGACAAAAGCATTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
196 AAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * *
138927 GACTATGTTTATGGTGCCTAAT-TTGAAAAAGAAT-GGGATTAGTTTGAGTATTCGTATTTGTCT
261 GACTATGTTTATGGTGCCTAATCTTG-AAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* * * * *
138990 TATTTTAGAGACAAACTTTGATTCTATCAGAAACGGTGAAAAGAAAAACTTTTCTTGCAACACCA
325 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCA
* * *
139055 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGGTTTTTGTTCCCAATCTTGAAAGGAATA
390 AAGCATCAATGTCATGTATCCTAATGAAGGGAATGT-GTTTTGGTTCCCAATCTTGAAAAGAATG
139120 GAGACTGTTATGAGAATCGAAG
454 GAGACTGTTATGAGAATCGAAG
* * * * * ** * *
139142 CATATCTTACTTAAGTTATGAACATTGATTTAAAGGAAAATGGGGCAAACAAATTATTTCAAAGC
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
139207 AAAAGAAAATCATCAATATCATTTATCTTAAAGAGGAGAATGTGTTTATAATGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * ** *
139272 AAGAATGAAGATCATTACCAGAATCCATGTTTGTCTTATTTGAGGCGTGAACTTAGACTTTAAAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT-ACA
* * ** *
139337 AAAATTGGTGGGAAAAAAGCTTTTCTTGTGAAACCAAGGCATCAATATGATGTATCCTAATGAGA
195 AAAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGA
* * *
139402 AGACTATGTTTATGGTGCCTAATCTTGAAAATAATGGGGATTTGTATGAGTATTCAAGTTTGTCT
260 AGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCT
* ** *
139467 TATTTAAAAGACAAACTTTGATTCTATCAAAAACGGT-GAGAA-AAAAGCTTTTCTTTTGACACA
325 TATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGA-AAGAAAAGCTTTTCTTGCGACACC
* * *
139530 AAAGCATC-ATGTCATGTATCTTAGTGAAGGGAATGTGTTTTCGGTTTCCAATCTTGAAAAGAAT
389 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-GGTTCCCAATCTTGAAAAGAAT
* * *
139594 AGTGA-TAGTTACGAGAATCGAAG
453 GGAGACT-GTTATGAGAATCGAAG
* * *
139617 CTT-GCTTTATTTAAGGTATGAACTTTGATTTAAAAGGAAACA-A-GGCAAAGAAAAGATTTTCA
1 CTTATC-TTATTTAAGGTATGAACATTGATTT-AAAGGAAA-ATAGGGCAAAGAAAAGATTTCCA
* * * * *
139679 TGCAAAAGAAAACCATTAGTATCATTTATCCTAATGAGAAGAA-GTTGTTTATAGTACCTAATCA
63 TGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATG-TGTTTATAGTGCCTAATCA
* * * * * *
139743 CAAAATAAATGTAGATCATTAGTAGAATCCAAGTTTGTCTCATTTAAGGCACGAACTTAGATTTT
127 CAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTT
* * * * * *
139808 ACAAAAATTGGTGGGGAAAATGCCTTTCTTGCGAAACCAAACCATCAATATCG-TATATCCTAAT
192 ACAAAAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCCTAAT
* * * * * * *
139872 GAAAAGACTATGTTTATGATGCCTAATCATGAAAAGAAAGTGGATTAGCAAGAGTATTCATGTTT
256 GAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTT
* * * * *
139937 GTCTAATTTAAGAGATAAACTTTGATTCCATCAATAATGGTGGAAAGAAAAGCTTTTCTTGCGAC
321 GTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGAC
* * *
140002 ACCAAAGCATCAATGCCATGTATCCTAATGAAGGGAAAGTTTTTTTGGTTCCCAATCTTGAAAAG
386 ACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATG-TGTTTTGGTTCCCAATCTTGAAAAG
*
140067 AATGGAGATTGTTATGAGAATCGAAG
450 AATGGAGACTGTTATGAGAATCGAAG
* * * * * *
140093 CTTATCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATAGGGCAAAGAAAAGATTTCCACGA
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
140158 AAAGAGAAAATCATCAATATCATTTA--CTAATTAAGAGAATAG-GTTTATAGTGCCTAATCGCA
66 AAA-AGAAAATCATCAATATCATTTATCCTAATGAGGAGAAT-GTGTTTATAGTGCCTAATCACA
* * * *
140220 AAATGAATGAAGATCATTACTAGAATCTATGTTTGTCTCATTTGAGGCACAAACTTAGGCTTCAC
129 AAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAC
* * * * * **
140285 AAAAATTGGTTGGAAAAATGCCATTCTTGCAAAATCAAAACATTAATATCTTGTATCCTAATGAG
194 AAAAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAG
* * * * *
140350 AAGACTATGTTTATAGCGCCTAATCTTGAAAAGAATAGGGATTAGTATAAGTATTCACGTTTGTC
259 AAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTC
* * * * * ** *
140415 TTATTT-AGGGATAAACATTAATTCTATCAATAACAATGGAAAGAAAAGGTTTTCTTGCGACACC
324 TTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACC
*
140479 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAAT
389 AAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG-TTCCCAATCTTGAAAAGAAT
* *
140544 GGAGACTGTTACGAGAATCGATG
453 GGAGACTGTTATGAGAATCGAAG
*
140567 CTTATCTTATTTAA-G---GAA-A---A--T--------A-A-GGCAAAGAAAAGATTTCCATGT
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* * *
140612 AAAAAAAAATCATCATTATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGTCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * * *
140677 ATGAATGAAGATCATTACTAAAATCCATGTTTATCTCATTTGGGGCACGAACTTAAACTTTAAAA
131 ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
* * * * * *
140742 AAATTGGTGGGAAAAAAACTTTTCTTGCAAAA-CTAGGCATCAATATGATGTATCCTAAAGAGAA
196 AAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
* * ** ** * *
140806 TACTATGTTTATAGTGCCTAATCCCGAAAAGAATGGGGATTTTTATGAGTATTTAGGTTTGTCTT
261 GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
* * * * * * * *
140871 ATTAAAAAGATAAACTTTTATTCTATCAAAAACGATGGAAGGAAAAGCTTTTCTTGTGACATCAA
326 ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
* * * * * *
140936 AGGATCAATGTCATGTATCCTAATGAAGGGAAAGTATTTTTGTATCTCAATATTGAAAAGAATGG
391 AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGT-TCCCAATCTTGAAAAGAATGG
**
141001 AGACAATTATGAGAATCGAAG
455 AGACTGTTATGAGAATCGAAG
** * * *
141022 CTTGCCTTATTTAAGGTATGAACTTTGATTTAAAGGAAAAAAGAGCAAAGAAAAGATTTCCATGC
1 CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
* *
141087 AAAAGAAAATCATCAGTATCATTTATCCTAATGAGAAGAATGTGTTTATAGTGCCTAATCACAAA
66 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
* * * *
141152 AT-AAGTGTAGATCATTAGTAGAATCTATGTTTTTCTCATTTGAGGCACGAACTTAGACTTTACA
131 ATGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
** * *
141216 AAAATT-CAT-GATAAAAATGCCTTTCTTGCAAAACCAAACCATCAATATCG-TGTATCTTAATG
195 AAAATTGGTTGGA-AAAAA-GCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCCTAATG
* * *
141278 AGAAGACTATGTTTGTAGTGCCTAATCTTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTG
257 AGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTG
* * * * *
141343 TCTTATTTAAAAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAGAAGCTTTTCTTGCAATA
322 TCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACA
* * *
141408 CCAAAGCATCAATGTAATGTATCCTAATGAGGGGAATCTGTTTTGGTTCCCAATCTTGAAAAGAA
387 CCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAA
* *
141473 TGGAAACTGTTACGAGAATC-AATG
452 TGGAGACTGTTATGAGAATCGAA-G
* * * *
141497 CTTATCTTATTTAAGGTAAGAA-ATTTGATTTGAAGGAAAATACGGCAAGGAAAAGATTTCCATG
1 CTTATCTTATTTAAGGTATGAACA-TTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATG
* * * * * ** *
141561 CAAAAGAATATTATCAATATCATTTATCCTATTTAGGAGAATGCGTTTATAGTGGTTGATCACAA
65 CAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAA
* * * * * *
141626 AATGAGTAAAGATCATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTCGATTTTACT
130 AATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACA
* * * *
141691 AAAATTGG-TGGCAAAAATGCCTTTCTTGCAAAACCAAAACATCAATATCG-TGTATCCTAGTCA
195 AAAATTGGTTGG-AAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATAT-GATGTATCCTAATGA
* * * * * * * * **
141754 GAAAATTATATTTATGGCGCCTAATCCTAAAAAGAATGGGGATCAGTCTGAGTATTCACATTTGT
258 GAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGT
* * * * * * * *
141819 CTTATTTAGGAGACAAACATTAATTCTATCTATAATGGTGGAAAGAAAAGGTTTTCTTGTGACAC
323 CTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACAC
141884 CAAAGCATCAATGT
388 CAAAGCATCAATGT
141898 TGTTAGGATC
Statistics
Matches: 3145, Mismatches: 483, Indels: 146
0.83 0.13 0.04
Matches are distributed among these distances:
453 20 0.01
454 108 0.03
455 252 0.08
456 2 0.00
459 3 0.00
463 368 0.12
464 15 0.00
465 4 0.00
466 1 0.00
468 1 0.00
470 3 0.00
472 2 0.00
473 11 0.00
474 302 0.10
475 1293 0.41
476 667 0.21
477 93 0.03
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.32
Consensus pattern (475 bp):
CTTATCTTATTTAAGGTATGAACATTGATTTAAAGGAAAATAGGGCAAAGAAAAGATTTCCATGC
AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAA
ATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAA
AAATTGGTTGGAAAAAAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAA
GACTATGTTTATGGTGCCTAATCTTGAAAAGAATGGGGATTAGTATGAGTATTCATGTTTGTCTT
ATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTGCGACACCAA
AGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGTTCCCAATCTTGAAAAGAATGGA
GACTGTTATGAGAATCGAAG
Found at i:142221 original size:13 final size:13
Alignment explanation
Indices: 142203--142229 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
142193 TCATTATGCT
142203 TTGTATCGATACA
1 TTGTATCGATACA
142216 TTGTATCGATACA
1 TTGTATCGATACA
142229 T
1 T
142230 GTTCATTGTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.15, G:0.15, T:0.41
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:142238 original size:19 final size:19
Alignment explanation
Indices: 142214--142265 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
142204 TGTATCGATA
**
142214 CATTGTATCGATACATGTT
1 CATTGTATCGATACATACT
* *
142233 CATTGTATCAATATATACT
1 CATTGTATCGATACATACT
142252 CAATTGTATCGATA
1 C-ATTGTATCGATA
142266 TATGAAACTG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.33, C:0.15, G:0.12, T:0.40
Consensus pattern (19 bp):
CATTGTATCGATACATACT
Found at i:151255 original size:13 final size:13
Alignment explanation
Indices: 151237--151266 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
151227 CTATACATGG
*
151237 TACATTGTATCGA
1 TACATTGTATCAA
151250 TACATTGTATCAA
1 TACATTGTATCAA
151263 TACA
1 TACA
151267 AAGTGAAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.10, T:0.37
Consensus pattern (13 bp):
TACATTGTATCAA
Found at i:152967 original size:474 final size:475
Alignment explanation
Indices: 152020--157050 Score: 4427
Period size: 474 Copynumber: 10.6 Consensus size: 475
152010 AGAGCTTACA
* **
152020 AATGTCACGTATCCTAAT-AAATGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
152084 TTATGAGAATCGATGCTTGTCTTATTTGAGGGATTAACTTTGATTTTAAGGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
** * * * * *
152149 AAAAGGTTTTCATGCAAAAGGAAATCATCAATATCATTCATCCTAATAAGGAGAATATGTTTATA
131 AAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
*
152214 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTAGTCTCATTTGAGGCACGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * *** * *
152279 ACATACACTTTAAAAAAATTGGCAGGAAAAAAGCCTTTCTTGCAAAACCAAAGCACCAATATGAT
261 ACTTAGACTTTAAAAAAA-TGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* * * * * *
152344 GTATCTTAATGGGAAGACTATGTTTATGGTGCCTAATCTTGAAAATAATGGGGATTAGAATAAGT
325 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGT
** * **
152409 ATTCAAGTTTGTCTTCTTTAAGTGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
390 ATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* * *
152474 TTCCTACGAC-CTCAAAGCATC
455 TTCTTGCAACAC-CAAAGCATC
* * *
152495 AATGTCATGTATCCTAATGAAGGGAATATGTTTTTAG-TTCCCAATCTTTAAAAGAATGGAGACT
1 AATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT
* * *
152559 GTTATGAGAATCGATGGTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGTAGA
65 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAA
* * * * *
152624 GAGAATATTTCCATGCAATA-AAAGTCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTAA
130 GAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* *
152688 AGTGCCTAATCACAAAATGAATGAAGATCGTTACTAGAACCCATGTTTGTCTCATTTGAGGCACG
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
152753 AACATAGCCTTTAAAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATATGAT
260 AACTTAGACTTTAAAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGAT
* *
152818 GTATTCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTTGTATGAGT
325 GTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGT
* * *
152883 ATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAAAGGTAGAAAGAAAAGCTT
390 ATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTT
* *
152948 TTCTTGCAATACTAAAGCATC
455 TTCTTGCAACACCAAAGCATC
* * *
152969 AAAGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
153034 TTACGAGAATCGATTCTTGTCTTATTTAA-GGA--AA-----A---T-------A-A-GGTAAAG
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
* * * * *
153079 AAAAGATTTTCATGTAAAAGAAAATCATCATTATCATTTATCCTAAAGAGGAGAATGTGTTTATA
131 AAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
* *
153144 GTGCCTAATCACAAAATGAATGAAGATCATTACT-GAAATCTATGTTTGTCTCATTTGAGGCACA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAG-AATCCATGTTTGTCTCATTTGAGGCACG
* * * *
153208 AACTTAGACCTTAAAAAAATTGGTGGGAAAAAAGTCTTTCTTTCGAAACCAAAGCATCAATATGA
260 AACTTAGACTTTAAAAAAA-TGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA
* * * * *
153273 TGTATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTCGAAAAGAATGGGGATTTGTATAAG
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAG
* * * *
153338 TACTT-AGGTTTGTTTTA-TTAAAATGACAAACTTTGATTCTATCAAAAATGATGGAAAGAAAAG
389 TA-TTCTGGTTTGTCTTATTTAAAA-GACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAG
* *
153401 CTTTTCCTATG--ACATCAAAGGATC
452 CTTTT-CT-TGCAACACCAAAGCATC
*
153425 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACA
1 AATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT
* ** * ** * * * * * *
153489 ATTACAAGAATCGAAGCTTACCTTATCTATGGCAAGAACTTTGATTTAAAAGAAAATATGGCAAA
65 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAA
* * * *
153554 GAAAAGATTTCCATG-TAAAGAAAATCAAT-AGTATCA-TTATCCTAATGAGGAGAATGTATTTA
130 GAAAATATTTCCATGCAAAAGAAAATC-ATCAATATCATTTATCCTAATGAGGAGAATGTGTTTA
** * * * * * *
153616 TAGTGCCTAATCACAAAAT-AAGTGTTGATCATTAGTAGAATCCTTGTTTTTTTCTTTTAAGGCA
194 TAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCA
* * * * * * *
153680 TGAACTTAGACATTACAAAAATTTG-TGAGAAAAATGCCTTTCTTACGAAACCAAACCATCAATA
258 CGAACTTAGACTTTA-AAAAA-ATGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATA
* * *
153744 TCG-TGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCTTGAAAAGAATAGGGACTAGTA
321 T-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTA
* * * ****
153808 TGAGTATTCAT-GTTTGTTTTATTTAAGAGGCAAACTTTGATTCTATCAAAAACAAAAGAAAGAA
385 TGAGTATTC-TGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* **
153872 AAGCTTTTCATGTGACACCAAAGCATC
449 AAGCTTTTCTTGCAACACCAAAGCATC
*
153899 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATATTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
153964 TTACGAGAATCGATGCTTGTCTTATTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCAAA-
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
* * *
154028 AAAATGATTTCCATGCAAAATAAAATCATGAATATCATTTATCCTAGA-GATGAGAATGTGTTTA
131 AAAAT-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTA-ATGAGGAGAATGTGTTTA
* * * * *
154092 TAATGCCTAATCAAAAAATGAATGAAGATCATTAATAAAATCCATGTTCGTGTCTCATTTGAGAC
194 TAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTT--TGTCTCATTTGAGGC
** * * *
154157 ACGAACTTAGACTTTACGAAAAT--TGGTGACAAAAATACCTTTCTTACGAAACTAAAGCATCAA
257 ACGAACTTAGACTTTAAAAAAATGATGG-GA-AAAAA-GCCTTTCTTGCGAAACCAAAGCATCAA
* * * * * *
154220 TATGATGTATCTTAATCAAAAGACTATGTTTATGGTGCCTAATCCTGAAAAAAATGGGGATTAGT
319 TATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGT
* * * * *
154285 ATGAGTATTCTTGTTTGTCTTATTTACAAGACAAACATTAATTCTATCAATAACGGTGGAAAGAA
384 ATGAGTATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAA
* **
154350 AAGGTTTTCTTGTGACACCAAAGCATC
449 AAGCTTTTCTTGCAACACCAAAGCATC
*
154377 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCCTGAAAAGAATGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * * *
154442 TTATGAGAATCAATGCTTGTTTTATTTAAGGGATTAATTTTGATTTTAAAGAAAATAGGGCAAAG
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
* * * * * * *
154507 AAAAGATTTTCATTCAAAAGGAAATCATCAATATCGTTTATCCTATTGAGAAGAATGTGTTTATA
131 AAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
*
154572 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTGTCTCATTTCAGGCACGA
196 GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
* * * * * * *
154636 ACATAGACTTTAAAAAAATTAGCA-AGAAAAAAAGCCCTTCCTGCGAAACCAAAGTATGAGTATC
261 ACTTAGACTTTAAAAAAA-T-G-ATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCA--A--
* ** ** ** * * **
154700 CTAATGATCTATCCTAATGAGAAG--TATGAGTATCAATATC-ATTTCAGGTACGAACATCAATA
319 -T-ATGATGTATCCTAATGAGAAGACTATGTTTAT-GGTGCCTA-ATC---T-TGAA-AAGAATA
* * * * * * * **
154762 -TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTACTCTTGAAAAG---AA-TGGGGATT
375 GGGAT-TA--GT-ATGAG--TATTCTGGTT-T-GT-CTTA-T-TT-AAAAGACAAACT-TTGATT
* * * ** * * *
154822 AGTAT-AAGTATTTA-GGTTTGTCTTATTTAACTGACAAA-CTTTGATT-CTATCA--AAAACGG
427 -CTATCAA--A--AACGG--TG---GA---AA--GA-AAAGCTTTTCTTGC-AACACCAAAGC-A
*
154881 TGG
474 T-C
* ** * * * ** * * ** ** * *
154884 AAAGAAAAGCTTTTCCT-ACGACA-CCAAAGTATCAAT-G--TCATATATCATAATAAAGGGAAT
1 AATGTCATG--TATCCTAATGA-AGGGAATGTGT-TTTGGCTTCCCA-ATCTTGA-AAA--GAAT
* ** * ** * ** * * *
154944 GTGTTTTTGGTTCCTAATCT-TTAAAAGAATGGA-GACTAT-TACGAGAGTCGATGGTTG-TCTT
58 G-G-----AG------A-CTGTTATGAGAATCGATG-CT-TGT-C-TTATTTAAGGGATGAAC--
*** * * *
155005 ATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGTACAGAAAAGATTTCCATGCAATAA-AA
104 -TTT----GAT----TTT-A-AAGAAA-A---TAGGGCAAAGAAAATATTTCCATGCAA-AAGAA
* * * * *
155069 AGTCATCAATATCATTTATCCTTATAAGGAGAATGTGGTTAAAGTGCCTAATCACAAAATGAATG
153 AATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** ** * *
155134 AAGATGGTTACTAGAATCCATGTTTGTCTCATTTGAGATACGAACTTAGACTTTACAAAAATTAG
218 AAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATGA-
* * * * *
155199 TGGG-AAAATGCCTTTCTTGCAAAACCAAACCATCAATATCATGTATCCTTATGAGAAGACTATG
282 TGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATG
* *** *
155263 TTTATAGTGCCTAATCTTGAAAAGAAT-GGAGATTAGTATGAGTATTCACATTTGTCTTATTTAG
347 TTTATGGTGCCTAATCTTGAAAAGAATAGG-GATTAGTATGAGTATTCTGGTTTGTCTTATTTAA
* * * * * *
155327 GAGACAAACATTAATTCTATCAATAACGGTGGAAAGAAAAGGTTTTCTTGTGAA-ACCAAAGCAT
411 AAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCTTG-CAACACCAAAGCAT
155391 C
475 C
* * * * * *
155392 ACTGTCATGTATCCTAATGAAGAGAATGAGTTTTGGCTTCACAATCTTGAAAGGAACGGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * *
155457 TTATGAGAATCGATACTTGTTTTATTTAA-GGA--AA-----A---TAAGGCAAAA-A----AAA
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAG-AAAATAGGGCAAA
* * * *
155506 G---AT-TTT-CATGTAAAAGAAAATCAACATTATCATTTATCCTAATTAGGAGAATGTGTTTAT
130 GAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * *
155566 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGGTACA
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * *
155631 AACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCC-TT-TTGCGAAACCAAAACACCAATATGA
260 AACTTAGACTTTAAAAAAA-TGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA
* * *** * *
155694 TGTATCGTAATGAGAATACTATGTTTATGGTGCCTAATCCCAAAAAAAATAGGGATTTGTATGAG
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAG
* * * * * * **
155759 TATT-TAGGTTTGCCTTATTAAAAAGACAAACTTTGATTTTATTAAAAACGATGGGAAGATTAGC
389 TATTCT-GGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* ** * *
155823 TTTTCCTGTGACATCAAAGGATC
453 TTTTCTTGCAACACCAAAGCATC
* * * *
155846 ATTTTTATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGACA
1 AATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT
* * * * * * *
155910 GTTACGTGAATCGAAGCTTGCCTTATTTAAGGTATGAACTTTGA-TTTAAACAAAAATAGGGTAA
65 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAA-GAAAATAGGGCAA
* * * *
155974 AGAAAAGATTTCCATTCAAAAGAAAATCATCAGTATGATTTTATCGC-AATGAGGAGAATGTGTT
129 AGAAAATATTTCCATGCAAAAGAAAATCATCAATATCA-TTTATC-CTAATGAGGAGAATGTGTT
* * * * * *
156038 TATAGTGCCTATTCACAAAAT-AAGTGTAGATCATTAGTATAATCCATGTTTTTCTC-TTTAAAG
192 TATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAATCCATGTTTGTCTCATTT-GAG
* * * * * *
156101 GCACAAACTTAGACTTTACAAAAATTCATGAGAAAAATGCCTTTCTTGCGAAAACAAAGCATCAA
255 GCACGAACTTAGACTTTA-AAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAA
* *
156166 TATCG-TGTATCCCAATGAGAAGACTATGTTTATAGTGCCTAATCTTGAAAAGAATAGGGATTAG
319 TAT-GATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAG
* * *
156230 TATGAGTATTCAT-GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAAACGGAGGAAAG
383 TATGAGTATTC-TGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAG
*
156294 AAAAGCTTTTCTTGCGACACCAAAGCATC
447 AAAAGCTTTTCTTGCAACACCAAAGCATC
* * *
156323 AATGTCATGTATCCTAATGGAGGGAATGTGTTTTGGCTTCCCAATATTGAAAAGAATTGAGACTG
1 AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
* * * ** *
156388 TTACGAGAGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTACGGAAAATGGGGC-AA-
66 TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
**
156451 AAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGTTTAT
131 AAAAT-ATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * * *
156516 AGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATATTTGTCTCATATGAGGCGCG
195 AGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACG
* * * * *
156581 AACTTAGACTTTACAAAAATTGGTGGCAAAAATGCCTTTCTTGTGAAACCAAAGCATCAATATGA
260 AACTTAGACTTTA-AAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGA
* * * * * *
156646 TGTATCCTAATGAAAATACTATGTTTACGGTGCCTAGTCCTGAAAA-ATATGGGGATTAGTATGA
324 TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGA-ATAGGGATTAGTATGA
* * * * ** *
156710 GCATTCAGGTTTGTCTTA-TTAAGAGACAAACATTGATTCTATCAAAAACGGCAGAAAGAAAATC
388 GTATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGC
* *
156774 TTTTCCTGCGACACCAAAGCATC
453 TTTTCTTGCAACACCAAAGCATC
* * *
156797 AAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTTAAAAGAATGGAGAC-
1 AATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCTTGAAAAGAATGGAGACT
** * * * *
156860 ----------T--ATGCTAATCTTATTTAAGGGATGAACTTTGATTTTAAGGAAAGTAAGGCATA
65 GTTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAA
* * * * * *
156913 GAAAATATTTCCATGCAATAGAAAATTATTAATATCATTTATCCTAACGAGGATAATGTGTTTGT
130 GAAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT
* * *
156978 AGTG-CTAAATCCCAAAATGAATGAAGAT-ATTACTAGAATCCATGTTTGTTTCATTTGAGACAC
195 AGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCAC
*
157041 AAACTTAGAC
259 GAACTTAGAC
157051 ATTGCAAAAA
Statistics
Matches: 3683, Mismatches: 641, Indels: 478
0.77 0.13 0.10
Matches are distributed among these distances:
453 1 0.00
454 231 0.06
455 258 0.07
456 249 0.07
457 15 0.00
458 2 0.00
459 2 0.00
460 3 0.00
461 82 0.02
462 79 0.02
463 7 0.00
464 9 0.00
465 1 0.00
466 1 0.00
468 1 0.00
469 8 0.00
470 1 0.00
471 2 0.00
472 3 0.00
473 26 0.01
474 749 0.20
475 524 0.14
476 260 0.07
477 267 0.07
478 395 0.11
479 6 0.00
480 8 0.00
481 5 0.00
482 17 0.00
485 6 0.00
486 6 0.00
488 1 0.00
489 5 0.00
490 2 0.00
491 8 0.00
492 4 0.00
493 16 0.00
494 10 0.00
495 4 0.00
496 2 0.00
497 6 0.00
498 1 0.00
499 3 0.00
502 1 0.00
504 1 0.00
505 10 0.00
506 11 0.00
507 32 0.01
508 32 0.01
509 13 0.00
510 11 0.00
511 1 0.00
513 1 0.00
516 3 0.00
517 1 0.00
518 5 0.00
519 2 0.00
520 4 0.00
521 11 0.00
522 15 0.00
523 4 0.00
524 10 0.00
526 8 0.00
527 1 0.00
529 6 0.00
530 9 0.00
531 1 0.00
533 18 0.00
534 9 0.00
535 9 0.00
536 3 0.00
537 2 0.00
538 1 0.00
539 24 0.01
540 103 0.03
541 35 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (475 bp):
AATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATCTTGAAAAGAATGGAGACTG
TTATGAGAATCGATGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAG
AAAATATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATA
GTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTGAGGCACGA
ACTTAGACTTTAAAAAAATGATGGGAAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTA
TTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
TCTTGCAACACCAAAGCATC
Found at i:153001 original size:159 final size:156
Alignment explanation
Indices: 152307--153025 Score: 427
Period size: 159 Copynumber: 4.5 Consensus size: 156
152297 TTGGCAGGAA
* * * * * *
152307 AAAAGCCTTTCTTGCAAAACCAAAGCACCAATATGATGTATCTTAATG-GGAAGACTATGTTTAT
1 AAAAGCTTTTCTTGC-AAACTAAAGCATCAATATCATGTATCCTAATGAGG--GAATATGTTTAT
* * * * *
152371 GGTGCCTAATCTTGAAAATAATGGGGATTAG-AATAAGTATTCA-AGTTTGTCTTCTTT-AAGTG
63 GGTGCCTAATCTTGAAAAGAAT-GGGATT-GTTATGAGTATTCATGGTTTGTCTTATTTAAAG-G
* * *
152433 ACAAACTTTGATTCTATCAAAAACGGTGGAAAG
125 ACAAACTTTGATTCTA-AAAAAAAGGTAGAAAG
* * * * * * *
152466 AAAAGCTTTTCCTACGACCTCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATATGTTTTTA
1 AAAAGCTTTTCTTGCAAACT-AAAGCATCAATATCATGTATCCTAATG-AGGGAATATGTTTATG
* * * * * * *
152531 GTTCCCAATCTTTAAAAGAATGGAGACTGTTATGAG-AATCGATGG-TTGTCTTATTTAAGGGAT
64 GTGCCTAATCTTGAAAAGAATGG-GATTGTTATGAGTATTC-ATGGTTTGTCTTATTTAAAGGAC
* * *
152594 GAACTTTGATTTTAAAGAAAATAGGGTAGAGAG
127 AAACTTTGATTCTAAA-AAAA-A-GGTAGAAAG
* * * * * * *
152627 AATA--TTTCCATGC-AA-TAAAAGTCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTAA
1 AAAAGCTTTTCTTGCAAACT-AAAG-CATCAATATCATGTATCCTAATGAGG-GAATATGTTTAT
* ** * * * ** * *
152688 AGTGCCTAATC-ACAAAATGAATGAAGATCGTTACT-AGAACCCAT-GTTTGTCTCATTT-GAGG
63 GGTGCCTAATCTTGAAAA-GAATG-GGATTGTTA-TGAGTATTCATGGTTTGTCTTATTTAAAGG
* * * * * * * *
152749 CACGAACATAGCCTT-TAAAAAAATGATGGGAA-
125 -ACAAACTTTG-ATTCTAAAAAAAAGGTAGAAAG
* * * * *
152781 AAAAGCCTTTCTTGCGAAACTAAAGCATCAATATGATGTATTCTAATGAGAAGACTATGTTTATG
1 AAAAGCTTTTCTTGC-AAACTAAAGCATCAATATCATGTATCCTAATGAG-GGAATATGTTTATG
*
152846 GTGCCTAATCTTGAAAAGAATAGGGATT-TGTATGAGTATTC-TGGTTTGTCTTATTTAAAAGAC
64 GTGCCTAATCTTGAAAAGAAT-GGGATTGT-TATGAGTATTCATGGTTTGTCTTATTTAAAGGAC
152909 AAACTTTGATTCTATAAAAAAAGGTAGAAAG
127 AAACTTTGATTCTA-AAAAAAAGGTAGAAAG
*
152940 AAAAGCTTTTCTTGCAATACTAAAGCATCAA-AGTCATGTATCCTAATGAAGGGAATGTGTTT-T
1 AAAAGCTTTTCTTGCAA-ACTAAAGCATCAATA-TCATGTATCCTAATG-AGGGAATATGTTTAT
*
153003 GGCTTCAC-AATCTTGAAAAGAAT
63 GG-TGC-CTAATCTTGAAAAGAAT
153026 AGAGACTGTT
Statistics
Matches: 418, Mismatches: 102, Indels: 80
0.70 0.17 0.13
Matches are distributed among these distances:
154 3 0.01
155 4 0.01
156 11 0.03
157 93 0.22
158 114 0.27
159 175 0.42
160 6 0.01
161 12 0.03
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (156 bp):
AAAAGCTTTTCTTGCAAACTAAAGCATCAATATCATGTATCCTAATGAGGGAATATGTTTATGGT
GCCTAATCTTGAAAAGAATGGGATTGTTATGAGTATTCATGGTTTGTCTTATTTAAAGGACAAAC
TTTGATTCTAAAAAAAAGGTAGAAAG
Found at i:153928 original size:930 final size:926
Alignment explanation
Indices: 152128--157073 Score: 4008
Period size: 930 Copynumber: 5.2 Consensus size: 926
152118 TAACTTTGAT
* * * * *
152128 TTTAAGGAAAATAGGGCAAAGAAAAGGTTTTCATGCAAAAGGAAATCATCAATATCATTCATCCT
1 TTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
*
152193 AATA-AGGAGAATATGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
66 AA-AGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTA-AATCCAT
* * * ** *
152257 GTTAGTCTCATTTGAGGCACGAACATACACTTTAAAAAAATTGGCAGGAAAAAAGCCTTTCTTGC
129 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTAC
* * * *
152322 AAAACCAAAGCACCAATATGATGTATCTTAATGGGAAGACTATGTTTATGGTGCCTAATCTTGAA
194 GAAACCAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTCGAA
* * * * *
152387 AATAATGGGGATTAGAATAAGTA-TTCAAGTTTGTCTTCTTTAAGTGACAAACTTTGATTCTATC
259 AAAAATGGGGATTAGTATAAGTACTT--AGTTTGTCTTATTAAAATGACAAACTTTGATTCTATC
* *
152451 AAAAACGGTGGAAAGAAAAGCTTTTCCTACGACCTCAAAGCATCAATGTCATGTATCCTAATGAA
322 AAAAACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAGCATCAATGTCATGTATCCTAATGAA
* * * * *
152516 GGGAATATGTTTTTAGTTCCCAATCTTTAAAAGAATGGAGACTGTTATGAGAATCGATGGTTGTC
387 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTC
* * * * *
152581 TTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGTAGAGAGAATATTTCCATGCAATA-A
452 TTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAA-AGA
* *
152645 AAGTCATCAATATCATTTATCCTATTGAGGAGAATGTGTTTAAAGTGCCTAATCACAAAATGAAT
516 AAATCATCAATATCA-TTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAAT
* * * * *
152710 GAAGATCGTTACTAGAACCCATGTTTGTCTCATTTGAGGCACGAACATAGCCTTTAAAAAAATGA
580 GAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACATTAAAAAAATGA
* * * * * *
152775 TGGGAAAAAAGCCTTTCTTGCGAAACTAAAGCATCAATATGATGTATTCTAATGAGAAGACTATG
645 TGAGAAAAAAGCCTTTCTTACGAAACCAAACCATCAATATGATGTATCCTAATGAGAAGACTATA
* * *
152840 TTTATGGTGCCTAATCTTGAAAAGAATAGGGATTTGTATGAGTATTCTGGTTTGTCTTATTTAAA
710 TTTATAGTGCCTAATCTTGAAAAGAATAGGGACTAGTATGAGTATTCTGGTTTGTCTTATTTAAA
* * * *
152905 AGACAAACTTTGATTCTATAAAAAAAGGTAGAAAGAAAAGCTTTTCTTGCAATACTAAAGCATCA
775 AGACAAACTTTGATTCTATAAAAAAA-GAAGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCA
*
152970 AAGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATCTTGAAAAGAATAGAGACTGT
839 AAGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATATTGAAAAGAATAGAGACTGT
*
153035 TACGAGAATCGATTCTTGTCTTA
904 TACGAGAATCGATGCTTGTCTTA
* *
153058 TTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGTAAAAGAAAATCATCATTATCATTTATCCT
1 TTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
*
153123 AAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTGAAATCTATG
66 AAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACT-AAATCCATG
* * * *
153188 TTTGTCTCATTTGAGGCACAAACTTAGACCTTAAAAAAATTGGTGGGAAAAAAGTCTTTCTTTCG
130 TTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTACG
* *
153253 AAACCAAAGCATCAATATGATGTATCCTAATGAGAATACTATGTTTATGGTGCCTAATCTCGAAA
195 AAACCAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAA
* * *
153318 AGAATGGGGATTTGTATAAGTACTTAGGTTTGTTTTATTAAAATGACAAACTTTGATTCTATCAA
260 AAAATGGGGATTAGTATAAGTACTTA-GTTTGTCTTATTAAAATGACAAACTTTGATTCTATCAA
* * *
153383 AAATGATGGAAAGAAAAGCTTTTCCTATGACATCAAAGGATCAATGTCATGTATCCTAATGAAGG
324 AAACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAGCATCAATGTCATGTATCCTAATGAAGG
** ** **
153448 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACAATTACAAGAATCGAAGCTTACCTT
389 GAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTCTT
* * * * * *
153513 ATCTATGGCAAGAACTTTGATTTAAAAGAAAATATGGCAAAGAAAAGATTTCCATGTAAAGAAAA
454 ATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAGAAAA
* * * *
153578 TCAAT-AGTATCATTATCCTAATGAGGAGAATGTATTTATAGTGCCTAATCACAAAAT-AAGTGT
519 TC-ATCAATATCATTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TGA
* * * * * * * * *
153641 TGATCATTAGTAGAATCCTTGTTTTTTTCTTTTAAGGCATGAACTTAGACATTACAAAAATTTG-
582 AGATCATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACATTA-AAAAA-ATGA
*
153705 TGAGAAAAATGCCTTTCTTACGAAACCAAACCATCAATATCG-TGTATCCTAATGAGAAGACTAT
645 TGAGAAAAAAGCCTTTCTTACGAAACCAAACCATCAATAT-GATGTATCCTAATGAGAAGACTAT
*
153769 ATTTATAGTGCCTAATCTTGAAAAGAATAGGGACTAGTATGAGTATTCAT-GTTTGTTTTATTTA
709 ATTTATAGTGCCTAATCTTGAAAAGAATAGGGACTAGTATGAGTATTC-TGGTTTGTCTTATTTA
* * **
153833 AGAGGCAAACTTTGATTCTATCAAAAACAA-AAGAAAGAAAAGCTTTTCATGTGACACCAAAGCA
773 AAAGACAAACTTTGATTCTAT-AAAAA-AAGAAGAAAGAAAAGCTTTTCATGCAACACCAAAGCA
* * *
153897 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCCCAATATTGAAAAGAATGGAGAC
836 TCAAAGTCATGTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATATTGAAAAGAATAGAGAC
153962 TGTTACGAGAATCGATGCTTGTCTTA
901 TGTTACGAGAATCGATGCTTGTCTTA
* * *
153988 TTTAAGGTATGAACTTTGATTTTAAGGAAAATAGGGCAAAAAAATGATTTCCATGCAAAATAAAA
1 TTTAAGG-A--AA-----A---TAAGG----TA----AAGAAAA-GATTTTCATGCAAAAGAAAA
* * * * *
154053 TCATGAATATCATTTATCCTAGAGATGAGAATGTGTTTATAATGCCTAATCAAAAAATGAATGAA
46 TCATCAATATCATTTATCCTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAA
* * **
154118 GATCATTAATAAAATCCATGTTCGTGTCTCATTTGAGACACGAACTTAGACTTTACGAAAATTGG
111 GATCATTACT-AAATCCATGTT--TGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGG
** * * *
154183 TGACAAAAATA-CCTTTCTTACGAAACTAAAGCATCAATATGATGTATCTTAATCAAAAGACTAT
173 TGGGAAAAA-AGCCTTTCTTACGAAACCAAAGCATCAATATGATGTATCTTAATGAGAAGACTAT
*
154247 GTTTATGGTGCCTAATC-CTGAAAAAAATGGGGATTAGTATGAGTATTCTT-GTTTGTCTTATTT
237 GTTTATGGTGCCTAATCTC-GAAAAAAATGGGGATTAGTATAAGTA--CTTAGTTTGTCTTA-TT
* * * * * * * *
154310 ACAA-GACAAACATTAATTCTATCAATAACGGTGGAAAGAAAAGGTTTTCTTGTGACACCAAAGC
298 AAAATGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAGC
*
154374 ATCAATGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGCTTCCCAATCCTGAAAAGAATGGAG
363 ATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAG
* * *
154438 ACTGTTATGAGAATC-AATGCTTGTTTTATTTAAGGGATTAATTTTGATTTTAAAGAAAATAGGG
427 ACTGTTATGAGAATCGAA-GCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGG
* * * *
154502 CAAAGAAAAGATTTTCAT-TCAAAAGGAAATCATCAATATCGTTTATCCTATTGAGAAGAATGTG
491 CAAAGAAAAGATTTCCATGT--AAAGAAAATCATCAATATC-ATTATCCTATTGAGGAGAATGTG
*
154566 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG-TTGTCTCATTTCAG
553 TTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAG
* * * * * ** *
154630 GCACGAACATAGACTTTAAAAAAATTA-GCAAGAAAAAAAGCCCTTCCTGCGAAACCAAAGTATG
618 GCACGAACATAGACATTAAAAAAATGATG--AG-AAAAAAGCCTTTCTTACGAAACCAAACCATC
* *
154694 AGTATCCTAATGATCTATCCTAATGAGAAGTA-TGAGTATCAATATCATTTCAGGTACGAACATC
680 A--A---T-ATGATGTATCCTAATGAGAAG-ACT-A-TAT---T-T-A--T-A-GT--G--CCT-
* **** * * * ** **
154758 AATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTACTCTTGAAAAGAATGGGGATTA
722 AATCT--TG-AAAAGAAT-AG-GGACTA-G--TAT-GAG--TATTC-TG----G--TTTGTCTTA
* * ** ** * * ***
154823 -GTATAAGTATTTAGGTTTGTCTTATTTAACTGACAAACTTTGATTCTATCAAAAACGGTGGAAA
769 TTTAAAAG-A-CAAACTTTG----A-TT--CT-ATAAA-----A----A--AAGAA-GAAAG-AA
**** * * * * * * *
154887 GAAAAGCTT-TTCCTACGACACCAAAGTATCAATGTCATATATCATAATAAAGGGAATGTGTTTT
811 -AAGCTTTTCATGC-A--ACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTG-TTT
* * * * * *
154951 TGG-TTC-CTAATCTTTAAAAGAATGGAGACTATTACGAGAGTCGATGGTTGTCTTA
871 TGGCTTCAC-AATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTA
* *
155006 TTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGTACAGAAAAGATTTCCATGCAATAA-AAA
1 TTTAA-GGA--AA-----A---T-------A-A-GGTAAAGAAAAGATTTTCATGCAA-AAGAAA
* * * *
155070 GTCATCAATATCATTTATCCTTATA-AGGAGAATGTGGTTAAAGTGCCTAATCACAAAATGAATG
45 ATCATCAATATCATTTATCC-TAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG
** ** * *
155134 AAGATGGTTACTAGAATCCATGTTTGTCTCATTTGAGATACGAACTTAGACTTTACAAAAATTAG
109 AAGATCATTACTA-AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGG
* * * * *
155199 TGGG-AAAATGCCTTTCTTGCAAAACCAAACCATCAATATCATGTATCCTT-ATGAGAAGACTAT
173 TGGGAAAAAAGCCTTTCTTACGAAACCAAAGCATCAATATGATGTAT-CTTAATGAGAAGACTAT
* * * * * *
155262 GTTTATAGTGCCTAATCTTGAAAAGAATGGAGATTAGTATGAGTA-TTCACATTTGTCTTATTTA
237 GTTTATGGTGCCTAATCTCGAAAAAAATGGGGATTAGTATAAGTACTT-A-GTTTGTCTTA-TTA
** * * * * * * * *
155326 GGA-GACAAACATTAATTCTATCAATAACGGTGGAAAGAAAAGGTTTTCTTGTGAAACCAAAGCA
299 AAATGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAGCA
* * * * * *
155390 TCACTGTCATGTATCCTAATGAAGAGAATGAG-TTTTGGCTTCACAATCTTGAAAGGAACGGAGA
364 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGAGA
*
155454 CTGTTATGAGAATCGATA-CTTGTTTTATTTAA-GGA--AA-----A---T-------A-A-GGC
428 CTGTTATGAGAATCGA-AGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGC
* * * *
155498 AAAAAAAAGATTTTCATGTAAAAGAAAATCAACATTATCATTTATCCTAATT-AGGAGAATGTGT
492 AAAGAAAAGATTTCCATGT-AAAGAAAATCATCAATATCA-TTATCCT-ATTGAGGAGAATGTGT
* *
155562 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAATGTTTGTCTCATTTGAGG
554 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGG
* * * * * * * * *
155627 TACAAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCC-TT-TTGCGAAACCAAAACACCAAT
619 CACGAACATAGACATTAAAAAAA-TGATGAGAAAAAAGCCTTTCTTACGAAACCAAACCATCAAT
* * * * *** * * *
155690 ATGATGTATCGTAATGAGAATACTATGTTTATGGTGCCTAATCCCAAAAAAAATAGGGATTTGTA
683 ATGATGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCTTGAAAAGAATAGGGACTAGTA
* * * * * * * *
155755 TGAGTATT-TAGGTTTGCCTTATTAAAAAGACAAACTTTGATTTTATTAAAAACGATGGGAAGAT
748 TGAGTATTCT-GGTTTGTCTTATTTAAAAGACAAACTTTGATTCTATAAAAAAAGA-AGAAAGAA
* * ** * * *** *
155819 TAGCTTTTCCTGTGACATCAAAGGATCATTTTTATGTATCCTAATGAAGGGAATGTGTTTTTGG-
811 AAGCTTTTCATGCAACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTG-TTTTGGC
* * * * * * *
155883 TTCCCAATCTTGAAAAGAATGGAGACAGTTACGTGAATCGAAGCTTGCCTTA
875 TTCACAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTA
* *
155935 TTTAAGGTATGAACTTTGATTTAAACAAAAATAGGGTAAAGAAAAGATTTCCATTCAAAAGAAAA
1 TTTAAGG-A--AA-----A--T--------A-A-GGTAAAGAAAAGATTTTCATGCAAAAGAAAA
* * * *
156000 TCATCAGTATGATTTTATCGC-AATGAGGAGAATGTGTTTATAGTGCCTATTCACAAAAT-AAGT
46 TCATCAATATCA-TTTATC-CTAAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-T
* * * * * *
156063 GTAGATCATTAGTATAATCCATGTTTTTCTC-TTTAAAGGCACAAACTTAGACTTTACAAAAATT
108 GAAGATCATTACTA-AATCCATGTTTGTCTCATTT-GAGGCACGAACTTAGACTTTAAAAAAATT
** * * * * **
156127 CATGAGAAAAATGCCTTTCTTGCGAAAACAAAGCATCAATATCG-TGTATCCCAATGAGAAGACT
171 GGTGGGAAAAAAGCCTTTCTTACGAAACCAAAGCATCAATAT-GATGTATCTTAATGAGAAGACT
* * * * *
156191 ATGTTTATAGTGCCTAATCTTGAAAAGAATAGGGATTAGTATGAGTA-TTCATGTTTGTCTTATT
235 ATGTTTATGGTGCCTAATCTCGAAAAAAATGGGGATTAGTATAAGTACTT-A-GTTTGTCTTA-T
* * * * ** *
156255 TAAGA-GACAAACTTTGATTCTATAAAAAACGGAGGAAAGAAAAGCTTTTCTTGCGACACCAAAG
297 TAAAATGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAG
* * *
156319 CATCAATGTCATGTATCCTAATGGAGGGAATGTG-TTTTGGCTTCCCAATATTGAAAAGAATTGA
362 CATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATGGA
* * * * ** *
156383 GACTGTTACGAGAGTCGATGCTTGTCTTATTTAAGGGATGAACTTTGATGTTACGGAAAATGGGG
426 GACTGTTATGAGAATCGAAGCTTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATAGGG
* * ***
156448 CAAA-AAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCTAACAAGGAGAATGTGT
491 CAAAGAAAAGATTTCCATG-TAAAGAAAATCATCAATATCA-TTATCCTATTGAGGAGAATGTGT
* * * *
156512 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATATTTGTCTCATATGAGG
554 TTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATGTTTGTCTCATTTAAGG
* * * * * * ** *
156577 CGCGAACTTAGACTTTACAAAAATTGGTG-GCAAAAATGCCTTTCTTGTGAAACCAAAGCATCAA
619 CACGAACATAGACATTA-AAAAAATGATGAG-AAAAAAGCCTTTCTTACGAAACCAAACCATCAA
* * * ** * * * *
156641 TATGATGTATCCTAATGAAAATACTATGTTTACGGTGCCTAGTCCTGAAAA-ATATGGGGATTAG
682 TATGATGTATCCTAATGAGAAGACTATATTTATAGTGCCTAATCTTGAAAAGA-ATAGGGACTAG
* * * * ** *
156705 TATGAGCATTCAGGTTTGTCTTA-TTAAGAGACAAACATTGATTCTATCAAAAACGGCAGAAAGA
746 TATGAGTATTCTGGTTTGTCTTATTTAAAAGACAAACTTTGATTCTAT-AAAAAAAGAAGAAAGA
* * * * *
156769 AAATCTTTTCCTGCGACACCAAAGCATCAAGGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGG
810 AAAGCTTTTCATGCAACACCAAAGCATCAAAGTCATGTATCCTAATGAAGGGAATGTG-TTTTGG
* * * * * * * ** **
156834 -TTCCCAATCTTTAAAAGAATGGAGACTATGCTAATCTTATTTAAGGGATGAACTT-TGAT-
874 CTTCACAATATTGAAAAGAATAGAGAC--TG-TTA-C-GA--GAATCGATG--CTTGTCTTA
* * * * * * * *
156893 TTTAAGGAAAGTAAGGCATAGAAAATATTTCCATGCAATAGAAAATTATTAATATCATTTATCCT
1 TTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
* * * *
156958 AACGAGGATAATGTGTTTGTAGTG-CTAAATCCCAAAATGAATGAAGAT-ATTACTAGAATCCAT
66 AAAGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTA-AATCCAT
* * * * ** *
157021 GTTTGTTTCATTTGAGACACAAACTTAGACATTGCAAAAACTGGT-GGAAAAAA
129 GTTTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAA
157074 TGCTTTGATT
Statistics
Matches: 3302, Mismatches: 505, Indels: 413
0.78 0.12 0.10
Matches are distributed among these distances:
928 9 0.00
929 238 0.07
930 809 0.25
931 266 0.08
932 7 0.00
933 7 0.00
934 2 0.00
935 7 0.00
936 48 0.01
937 45 0.01
938 37 0.01
939 3 0.00
940 1 0.00
941 5 0.00
942 1 0.00
944 3 0.00
945 3 0.00
947 2 0.00
948 2 0.00
949 9 0.00
950 233 0.07
951 130 0.04
952 414 0.13
953 54 0.02
954 96 0.03
955 6 0.00
956 1 0.00
957 1 0.00
958 13 0.00
959 4 0.00
960 25 0.01
961 2 0.00
962 5 0.00
963 3 0.00
965 2 0.00
966 4 0.00
967 3 0.00
968 4 0.00
969 1 0.00
970 1 0.00
971 5 0.00
972 2 0.00
973 1 0.00
974 1 0.00
975 2 0.00
976 6 0.00
978 3 0.00
979 4 0.00
980 3 0.00
981 6 0.00
982 2 0.00
984 3 0.00
985 4 0.00
986 2 0.00
987 24 0.01
988 1 0.00
991 1 0.00
992 1 0.00
993 18 0.01
994 7 0.00
995 116 0.04
996 40 0.01
997 2 0.00
998 1 0.00
999 1 0.00
1000 2 0.00
1002 5 0.00
1003 1 0.00
1004 1 0.00
1007 2 0.00
1011 1 0.00
1012 7 0.00
1013 2 0.00
1014 5 0.00
1015 248 0.08
1016 48 0.01
1017 3 0.00
1018 191 0.06
1019 18 0.01
1023 2 0.00
1025 1 0.00
1026 1 0.00
1027 2 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (926 bp):
TTTAAGGAAAATAAGGTAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCT
AAAGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAAATCCATGT
TTGTCTCATTTGAGGCACGAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCCTTTCTTACGA
AACCAAAGCATCAATATGATGTATCTTAATGAGAAGACTATGTTTATGGTGCCTAATCTCGAAAA
AAATGGGGATTAGTATAAGTACTTAGTTTGTCTTATTAAAATGACAAACTTTGATTCTATCAAAA
ACGGTGGAAAGAAAAGCTTTTCCTATGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGAAGCTTGTCTTAT
TTAAGGGATGAACTTTGATTTTAAAGAAAATAGGGCAAAGAAAAGATTTCCATGTAAAGAAAATC
ATCAATATCATTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGAT
CATTACTAGAATCCATGTTTGTCTCATTTAAGGCACGAACATAGACATTAAAAAAATGATGAGAA
AAAAGCCTTTCTTACGAAACCAAACCATCAATATGATGTATCCTAATGAGAAGACTATATTTATA
GTGCCTAATCTTGAAAAGAATAGGGACTAGTATGAGTATTCTGGTTTGTCTTATTTAAAAGACAA
ACTTTGATTCTATAAAAAAAGAAGAAAGAAAAGCTTTTCATGCAACACCAAAGCATCAAAGTCAT
GTATCCTAATGAAGGGAATGTGTTTTGGCTTCACAATATTGAAAAGAATAGAGACTGTTACGAGA
ATCGATGCTTGTCTTA
Found at i:156703 original size:475 final size:469
Alignment explanation
Indices: 155480--157072 Score: 1891
Period size: 475 Copynumber: 3.4 Consensus size: 469
155470 TACTTGTTTT
* * * * * *
155480 ATTTAAGGAAAATAAGGCAAAAAAAAGATTTTCATGTAAAAGAAAATCAACATTATCATTTATCC
1 ATTTACGGAAAATAGGGC-AAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
** *
155545 TAATTAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCAAT
65 TAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * *
155610 GTTTGTCTCATTTGAGGTACAAACTTAGACTTTAAAAAAATTGGTGGGAAAAAAGCC-TT-TTGC
130 GTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGT-GGAAAAATGCCTTTCTTGC
* * * **
155673 GAAACCAAAACACCAATATGATGTATCGTAATGAGAATACTATGTTTATGGTGCCTAATCCCAAA
194 GAAACCAAAGCATCAATATGATGTATCCTAATGAGAATACTATGTTTATGGTGCCTAAT-CCTGA
* * * * * * *
155738 AAAAATAGGGATTTGTATGAGTATTTAGGTTTGCCTTATTAAAAAGACAAACTTTGATTTTATTA
258 AAAAATAGGGATTAGTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA
* ** * * * * * *
155803 AAAAC-GATGGGAAGATTAGCTTTTCCTGTGACATCAAAGGATCATTTTTATGTATCCTAATGAA
323 AAAACGGA-GGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* * *
155867 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACAGTTACGTGAATCGAAGCTTGCC
387 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGAC-GTTACG-G-ATCGATGCTTGTC
*
155932 TTATTTAAGGTATGAACTTTG
449 TTATTTAAGGGATGAACTTTG
* * * * *
155953 ATTTAAAC-AAAAATAGGGTAAAGAAAAGATTTCCATTCAAAAGAAAATCATCAGTATGATTTTA
1 ATTT--ACGGAAAATAGGGCAAA-AAAAGATTTCCATGCAAAAGAAAATCATCAATATCA-TTTA
* * * * *
156017 TCGC-AATGAGGAGAATGTGTTTATAGTGCCTATTCACAAAAT-AAGTGTAGATCATTAGTATAA
62 TC-CTAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAA-TGAAGATCATTACTAGAA
* * **
156080 TCCATGTTTTTCTC-TTTAAAGGCACAAACTTAGACTTTACAAAAATTCATGAGAAAAATGCCTT
125 TCCATGTTTGTCTCATTT-GAGGCACAAACTTAGACTTTACAAAAATTGGTG-GAAAAATGCCTT
* * * *
156144 TCTTGCGAAAACAAAGCATCAATATCG-TGTATCCCAATGAGAAGACTATGTTTATAGTGCCTAA
188 TCTTGCGAAACCAAAGCATCAATAT-GATGTATCCTAATGAGAATACTATGTTTATGGTGCCTAA
* *
156208 TCTTGAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
252 TCCTGAAAA-AATAGGGATTAGTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGAT
*
156273 TCTATAAAAAACGGAGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT
316 TCTATAAAAAACGGAGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCT
* *
156338 AATGGAGGGAATGTG-TTTTGGCTTCCCAATATTGAAAAGAATTGAGACTGTTACGAGAGTCGAT
381 AATGAAGGGAATGTGTTTTTGG-TTCCCAATCTTGAAAAGAATTGAGAC-GTTACG-GA-TCGAT
156402 GCTTGTCTTATTTAAGGGATGAACTTTG
442 GCTTGTCTTATTTAAGGGATGAACTTTG
* *
156430 ATGTTACGGAAAATGGGGCAAAAAATGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
1 AT-TTACGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCC
* *
156495 TAACAAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCAT
65 TAACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCAT
* * * * *
156560 ATTTGTCTCATATGAGGCGCGAACTTAGACTTTACAAAAATTGGTGGCAAAAATGCCTTTCTTGT
130 GTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGG-AAAAATGCCTTTCTTGC
* * *
156625 GAAACCAAAGCATCAATATGATGTATCCTAATGAAAATACTATGTTTACGGTGCCTAGTCCTGAA
194 GAAACCAAAGCATCAATATGATGTATCCTAATGAGAATACTATGTTTATGGTGCCTAATCCTGAA
* * * *
156690 AAATATGGGGATTAGTATGAGCATTCAGGTTTGTCTTA-TTAAGAGACAAACATTGATTCTATCA
259 AAA-ATAGGGATTAGTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAA
* * *
156754 AAAACGGCA-GAAAGAAAATCTTTTCCTGCGACACCAAAGCATCAAGGTCTTGTATCCTAATGAA
323 AAAACGG-AGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAA
* **
156818 GGGAATGTGTTTTTGGTTCCCAATCTTTAAAAGAA-TG-GA-G--AC---T--ATGCTAATCTTA
387 GGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGACGTTACGGATCGATGCTTGTCTTA
156873 TTTAAGGGATGAACTTTG
452 TTTAAGGGATGAACTTTG
* * * * * * * *
156891 ATTTTAAGGAAAGTAAGGCATAGAAAATATTTCCATGCAATAGAAAATTATTAATATCATTTATC
1 A-TTTACGGAAAATAGGGCA-AAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATC
* * *
156956 CTAACGAGGATAATGTGTTTGTAGTG-CTAAATCCCAAAATGAATGAAGAT-ATTACTAGAATCC
64 CTAACGAGGAGAATGTGTTTATAGTGCCT-AATCACAAAATGAATGAAGATCATTACTAGAATCC
* * * * *
157019 ATGTTTGTTTCATTTGAGACACAAACTTAGACATTGCAAAAACTGGTGGAAAAA
128 ATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAA
157073 ATGCTTTGAT
Statistics
Matches: 966, Mismatches: 126, Indels: 69
0.83 0.11 0.06
Matches are distributed among these distances:
460 5 0.01
461 96 0.10
462 82 0.08
463 1 0.00
468 2 0.00
470 1 0.00
472 2 0.00
473 9 0.01
474 155 0.16
475 314 0.33
476 53 0.05
477 241 0.25
478 5 0.01
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (469 bp):
ATTTACGGAAAATAGGGCAAAAAAAGATTTCCATGCAAAAGAAAATCATCAATATCATTTATCCT
AACGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTACTAGAATCCATG
TTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAATGCCTTTCTTGCGA
AACCAAAGCATCAATATGATGTATCCTAATGAGAATACTATGTTTATGGTGCCTAATCCTGAAAA
AATAGGGATTAGTATGAGTATTCAGGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATAAAAA
ACGGAGGAAAGAAAAGCTTTTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGA
ATGTGTTTTTGGTTCCCAATCTTGAAAAGAATTGAGACGTTACGGATCGATGCTTGTCTTATTTA
AGGGATGAACTTTG
Found at i:159080 original size:13 final size:13
Alignment explanation
Indices: 159062--159091 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
159052 ACTTTTCACC
159062 ATGTATCGATACA
1 ATGTATCGATACA
*
159075 ATGTATGGATACA
1 ATGTATCGATACA
159088 ATGT
1 ATGT
159092 CTCATGTATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:159181 original size:19 final size:20
Alignment explanation
Indices: 159136--159187 Score: 70
Period size: 19 Copynumber: 2.6 Consensus size: 20
159126 CTACCAGTTT
* *
159136 CATGTATTGATACAATTGAG
1 CATGTATCGATACAATTGAA
*
159156 TATGTATCGATACAA-TGAA
1 CATGTATCGATACAATTGAA
159175 CATGTATCGATAC
1 CATGTATCGATAC
159188 TTCTGGACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
19 15 0.54
20 13 0.46
ACGTcount: A:0.37, C:0.13, G:0.17, T:0.33
Consensus pattern (20 bp):
CATGTATCGATACAATTGAA
Found at i:164676 original size:165 final size:163
Alignment explanation
Indices: 164397--164709 Score: 500
Period size: 165 Copynumber: 1.9 Consensus size: 163
164387 ATTCTATTTT
* *
164397 ATGGAAGCCCGAAAGAACACGAAAGGTTATTTTAAAATCTTTTATTCCCCTACGGATGCCCATAG
1 ATGGAAACCCGAAAGAACACGAAAGGTTATTTTAAAATCTTTTATACCCCTACGGATGCCCATAG
* *
164462 GAATATAAAGGATTAGAAAAAAAAGATATTAGAATTTATCCTGATAATACAAATTTAATTTAATT
66 GAATATAAAAGATTAGAAAAAAAAGATATTAGAATTTATCCCGATAATACAAATTTAATTTAA-T
164527 TAATTTATTTTTTAAAAATACCATTTCATACACTA
130 T-ATTTATTTTTTAAAAATACCATTTCATACACTA
* * * * * *
164562 ATGGAAACCCGAAAGAATACGAAAGGTTTTTTTGAAATGTTTTATACCCCTATGGATGCCTATAG
1 ATGGAAACCCGAAAGAACACGAAAGGTTATTTTAAAATCTTTTATACCCCTACGGATGCCCATAG
*
164627 GAATATAAAAGATTAGAAAAAAAAGATATTAGAATTTATCCCGATAATACCAATTTAATTTAATT
66 GAATATAAAAGATTAGAAAAAAAAGATATTAGAATTTATCCCGATAATACAAATTTAATTTAATT
*
164692 ATTTATTTTTTGAAAATA
131 ATTTATTTTTTAAAAATA
164710 TCTGAAAGCT
Statistics
Matches: 136, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
163 17 0.12
164 2 0.01
165 117 0.86
ACGTcount: A:0.42, C:0.12, G:0.12, T:0.34
Consensus pattern (163 bp):
ATGGAAACCCGAAAGAACACGAAAGGTTATTTTAAAATCTTTTATACCCCTACGGATGCCCATAG
GAATATAAAAGATTAGAAAAAAAAGATATTAGAATTTATCCCGATAATACAAATTTAATTTAATT
ATTTATTTTTTAAAAATACCATTTCATACACTA
Found at i:165484 original size:13 final size:13
Alignment explanation
Indices: 165466--165491 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
165456 AATTTTTTTG
165466 TGTATCGATACAT
1 TGTATCGATACAT
165479 TGTATCGATACAT
1 TGTATCGATACAT
165492 ACTTGGTGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:166109 original size:33 final size:33
Alignment explanation
Indices: 166072--166138 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
166062 TTCAACGATT
166072 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
166105 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
166138 T
1 T
166139 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:166110 original size:13 final size:13
Alignment explanation
Indices: 166092--166116 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
166082 CATAAAATGT
166092 TGTATCGATACAA
1 TGTATCGATACAA
166105 TGTATCGATACA
1 TGTATCGATACA
166117 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:171561 original size:13 final size:13
Alignment explanation
Indices: 171543--171567 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
171533 ATAATCACCC
171543 TGTATCGATACAA
1 TGTATCGATACAA
171556 TGTATCGATACA
1 TGTATCGATACA
171568 TTGAATTTCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:175487 original size:21 final size:21
Alignment explanation
Indices: 175458--175502 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
175448 AAGTTTTTAT
*
175458 TTTTCTTAGCTAAC-TCATTA
1 TTTTCTTAGCCAACTTCATTA
*
175478 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
175500 TTT
1 TTT
175503 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 8 0.38
22 8 0.38
ACGTcount: A:0.22, C:0.20, G:0.04, T:0.53
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:181097 original size:43 final size:43
Alignment explanation
Indices: 181053--182194 Score: 984
Period size: 43 Copynumber: 26.6 Consensus size: 43
181043 GACTCAGAGT
* * ** *
181053 CGACAAGTAGATTTAAGGGTGAGGAAGTCTCCCGGGTCAAAGT
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * *
181096 CGACAAGCAGACTTAAGGGTGAGGAAGTTTCTC-GGGTAAAAGT
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTC-CAAGGTCAAAGC
* * * * * **
181139 CGATAGGCAGACTTAAGGGTAAGGAAGTCTCTC-GGGTTAAAAT
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTC-CAAGGTCAAAGC
* *
181182 CAACAAGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * *
181225 CGATAGGCAGACTTAAGAGTGAGAAAGTCTCCAGGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * *
181268 CGACAGGCAGACTGAAAGGTAATGAAGTCT-CAAGGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAA-GGTCAAAGC
* * * *
181311 TGATAAGCAGACTTAAGAGTGATGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * ** * *
181354 CAATAGGCAGACTTAAGGGTAACAAAATCTCCAAGGTTAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * *
181397 TGACAAGCAGACTTAAGGGTGAAGAAGTCTCCATGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * * *
181440 CGACAAGCAAACTAAAGGGTGAGGAGGTCTCTAGGGTCAAAAC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* *
181483 CGACAGGCAGAGTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * * * *
181526 CGATAGGCAGACTTAAGGGTGAAGAACTCTCTAAGGTCAATGA
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
** * * *
181569 AAACAGGCAGACTTAAGGGTAAGGAAGTCTCCAGGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * *
181612 CGACAAGCAGACTTAAGGGTAAAGAAGTCTCCAGGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * ** * *
181655 CGACAAGCAGACTAAAGGGTGAGGAGGTCTTTAGGGTCAAAAC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * *
181698 CGACAGGTAAACTTAGGGGTGACGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * *
181741 CGATAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* *
181784 CAAC-AGACAGACTTAAGGGTAAGGAAGTCTCCAAGGTCAAAGC
1 CGACAAG-CAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * *
181827 CAACAGGCAGACTTGA-GATGAGGCAA-TCTCCAAGGTCAAAAC
1 CGACAAGCAGACTTAAGGGTGAGG-AAGTCTCCAAGGTCAAAGC
* * * * * * * *
181869 CGATAAGCAAACTGAAGGGTAATGAAGTGTCTAGGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * * * *
181912 CGAC-AGATAGACTGAAAGGTAATGAAGTCTCTAGGGTCAAAGC
1 CGACAAG-CAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * * *
181955 TGACAGGTAGACTTAAGGGTGAGTAAATCTCCAAGGTCAAAGT
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * * *
181998 CGATAGGCAGACTGAAGGGTGAGGAAGTCTCTAAGGTCAATGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * ** *
182041 TGACAAGTAGACTTAAAGGTGAAAAAGTCTTCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * *
182084 TGACAGGCAGACTTAAGGGTGAAGAAGTCTCCAAGGTCAAAGC
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * * ** * * *
182127 TGACAAACAAACTTAAGGGTGAAAAAGTCTCTAGGGTCAAAGT
1 CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
* * *
182170 CGACAGGCAAACTTAAGGGTCAGGA
1 CGACAAGCAGACTTAAGGGTGAGGA
182195 TTGGAATGAG
Statistics
Matches: 891, Mismatches: 197, Indels: 22
0.80 0.18 0.02
Matches are distributed among these distances:
42 38 0.04
43 847 0.95
44 6 0.01
ACGTcount: A:0.36, C:0.18, G:0.29, T:0.18
Consensus pattern (43 bp):
CGACAAGCAGACTTAAGGGTGAGGAAGTCTCCAAGGTCAAAGC
Found at i:194734 original size:43 final size:43
Alignment explanation
Indices: 193676--194719 Score: 953
Period size: 43 Copynumber: 24.3 Consensus size: 43
193666 CTCATTCCAA
* * * * *
193676 TCCTGACCCTTAAGTTTGCCTGTCGACTTTGACCCTAGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
** * ** *
193719 TTTTCACCCTTAAGTTTGTTTGTCAGCTTTGACCTTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * *
193762 TCTTCACCCTTAAGTCTGCCTGTCAGCTTTGACCTTGAAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
** * * * ** * *
193805 TTTTCACCTTTAAGTCTACTTGTCAACATTGACCTTAGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * *
193848 TCCTCACCCTTCAGTCTGCCTATCGACTTTGACCTTGGAGATT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * *
193891 TACTCACCCTTAAGTCTACCTGTCAGCTTTGACCCTAGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * ** * * *
193934 TCATTACCTTTCAGTCTATCTGTCGGCTTTGACCCTAGACACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * * * *
193977 TCATTACCCTTCAGTTTGCTTATCGGTTTTGACCTTGGAGA-T
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * *
194019 TGCCTCA-TCTCAAGTCTGCCTGTTGGCTTTGACCTTGGAGACT
1 T-CCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * *
194062 TCCTTACCCTTAAGTCTGTCTGTTGGCTTTGACCTTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* *
194105 TCTTCACCCTTAAGTCTGCCTATCGGCTTTGACCTTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * * * * *
194148 TCGTCACCCCTAAGTTTACCTGTCGGTTTTGACCCTAGAGACC
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * *
194191 TCCTCACCCTTTAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * *
194234 TCTTTACCCTTAAGTCTGCTTGTCGGCTTTGACCCTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* *** * * *
194277 TCCTTACCCTTAAGTCTGCCTGTTTTCATTGACCTTAGAGAGT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* *
194320 TCTTCACCCTTAAGTCTGCCTATCGGCTTTGACCTTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * *
194363 TCCTCACCCTTAACTCTGCCTGTCGGTTTTGACCCTAGAGACC
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * *
194406 TCCTCACCCTTTAGTTTGCTTGTCGGCTTTGACCATGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * *
194449 TCTTCACCCTTAAGTCTGCTTGTCAGCTTTAACCTTGGAGATT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
** * * *
194492 TTGTTACCCTTAAGTCTGCCTATTGGCTTTGACCTTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * *
194535 TCATCACTCTTAAGTCTGCTTATCAGCTTTGACCCTT-GAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGA-CCTTGGAGACT
* * * * *
194578 TCATTACCTTTCAGTCTGCCTGTCGGCTTTGACCCTGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
* * * * * * *
194621 TTCTCACTCTTAAGTCTGCCTATCGACTTTTACC-CGAGAAACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTG-GAGACT
* * **
194664 TCCTCACCCTTAAGTCTGCTTGTCGACTTTGACCCGGGAGACT
1 TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
194707 TCCTCACCCTTAA
1 TCCTCACCCTTAA
194720 ATCTACTTGT
Statistics
Matches: 812, Mismatches: 182, Indels: 14
0.81 0.18 0.01
Matches are distributed among these distances:
42 36 0.04
43 771 0.95
44 5 0.01
ACGTcount: A:0.17, C:0.29, G:0.18, T:0.36
Consensus pattern (43 bp):
TCCTCACCCTTAAGTCTGCCTGTCGGCTTTGACCTTGGAGACT
Found at i:194752 original size:43 final size:43
Alignment explanation
Indices: 194598--194738 Score: 131
Period size: 43 Copynumber: 3.3 Consensus size: 43
194588 TCAGTCTGCC
* * * * * * *
194598 TGTCGGCTTTGACCCTG-GAGACTTTCTCACTCTTAAGTCTGCC
1 TGTCGACTCTGACCC-GAGAGACTTCCTCACCCTTAAATCTACT
* * * * * *
194641 TATCGACTTTTACCCGAGAAACTTCCTCACCCTTAAGTCTGCT
1 TGTCGACTCTGACCCGAGAGACTTCCTCACCCTTAAATCTACT
* *
194684 TGTCGACTTTGACCCGGGAGACTTCCTCACCCTTAAATCTACT
1 TGTCGACTCTGACCCGAGAGACTTCCTCACCCTTAAATCTACT
194727 TGTCGACTCTGA
1 TGTCGACTCTGA
194739 GTCTAGTGAC
Statistics
Matches: 83, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 82 0.99
ACGTcount: A:0.19, C:0.31, G:0.17, T:0.33
Consensus pattern (43 bp):
TGTCGACTCTGACCCGAGAGACTTCCTCACCCTTAAATCTACT
Found at i:200320 original size:21 final size:21
Alignment explanation
Indices: 200287--200336 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
200277 TTGCAAGTTG
*
200287 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
200309 AAATAATG-AGTTAGCTAAGAA
1 AAATAAAGAAGTTAGCTAAG-A
200330 AAATAAA
1 AAATAAA
200337 AACTTGCATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.67
22 7 0.29
ACGTcount: A:0.56, C:0.04, G:0.18, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:204240 original size:13 final size:13
Alignment explanation
Indices: 204222--204246 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
204212 GGAAATTCAA
204222 TGTATCGATACAT
1 TGTATCGATACAT
204235 TGTATCGATACA
1 TGTATCGATACA
204247 GGGTGATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:209575 original size:13 final size:13
Alignment explanation
Indices: 209557--209581 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
209547 CAAAGATCAG
209557 TGTATCGATACAA
1 TGTATCGATACAA
209570 TGTATCGATACA
1 TGTATCGATACA
209582 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:209659 original size:33 final size:33
Alignment explanation
Indices: 209622--209688 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
209612 AGTAGCTTAA
209622 ATTGTATCGATACAAAAAAATATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
* ***
209655 ATTGTATCGATACAACATTTTATGTATCGATAC
1 ATTGTATCGATACAAAAAAATATGTATCGATAC
209688 A
1 A
209689 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.34
Consensus pattern (33 bp):
ATTGTATCGATACAAAAAAATATGTATCGATAC
Found at i:209662 original size:13 final size:13
Alignment explanation
Indices: 209644--209668 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
209634 CAAAAAAATA
209644 TGTATCGATACAT
1 TGTATCGATACAT
209657 TGTATCGATACA
1 TGTATCGATACA
209669 ACATTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:210287 original size:13 final size:13
Alignment explanation
Indices: 210269--210294 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
210259 TACACCAAGT
210269 ATGTATCGATACA
1 ATGTATCGATACA
210282 ATGTATCGATACA
1 ATGTATCGATACA
210295 CAAAAAAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:218032 original size:28 final size:28
Alignment explanation
Indices: 217940--218373 Score: 283
Period size: 28 Copynumber: 15.2 Consensus size: 28
217930 CACCAACTTG
* *
217940 TGTGGGCTTTAGAGAAGGTTGCCACCAACT
1 TGTGGGCTTTA-A-AAGGATGCCACTAACT
* * * * *
217970 TGTGTGCTTTGGAAGGGTTGCCACTGACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* *
217999 TATGGGCTTTAAAAGGATGCCACTAATT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* *
218027 TGTGGGCTTCAAAAAGATGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
** * *
218055 TGTGGGCTTCGAAAGGGTGCCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* *
218083 TGTGGGCTTTGAAAAGAATGCTA-TAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* * * *
218111 TGTGGGCTTTCAAAGGGTACCACTGACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* *
218139 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
* *
218167 TGTGGGCTTTTAAGAGGAGTGCCACTGACT
1 TGTGGGC-TTTAAAAGGA-TGCCACTAACT
* *
218197 TTTGGGCTTTGAAAAGG-TGTCACTAACT
1 TGTGGGCTTT-AAAAGGATGCCACTAACT
* * *
218225 TAT-GG--TTAAAAGAGATTACCA-TCGACTT
1 TGTGGGCTTTAAAAG-GA-TGCCACT-AAC-T
* *
218253 GTGTGGGC-TTAAAAGGGTGTCACTAACT
1 -TGTGGGCTTTAAAAGGATGCCACTAACT
* * * * **
218281 TATGGGCTTTGAGAGAGATTACCACCGACT
1 TGTGGGCTTTAAAAG-GA-TGCCACTAACT
218311 TGTATGGGCTTT--AAGGAGTGCCACTAACT
1 TG--TGGGCTTTAAAAGGA-TGCCACTAACT
* *
218340 TGTGGGCTTTGAAAGGGTGCCACTAACT
1 TGTGGGCTTTAAAAGGATGCCACTAACT
*
218368 TATGGG
1 TGTGGG
218374 TTTTTGAAAA
Statistics
Matches: 314, Mismatches: 68, Indels: 46
0.73 0.16 0.11
Matches are distributed among these distances:
24 5 0.02
25 3 0.01
26 1 0.00
27 28 0.09
28 154 0.49
29 63 0.20
30 45 0.14
31 7 0.02
32 8 0.03
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (28 bp):
TGTGGGCTTTAAAAGGATGCCACTAACT
Found at i:219687 original size:14 final size:15
Alignment explanation
Indices: 219668--219696 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
219658 CCTTTTTGAA
219668 ATTTTTTTT-ATTTT
1 ATTTTTTTTCATTTT
219682 ATTTTTTTTCATTTT
1 ATTTTTTTTCATTTT
219697 TTAAGGATGC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (15 bp):
ATTTTTTTTCATTTT
Found at i:221810 original size:13 final size:13
Alignment explanation
Indices: 221792--221817 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
221782 ATATTATGCT
221792 TTGTATCGATACA
1 TTGTATCGATACA
221805 TTGTATCGATACA
1 TTGTATCGATACA
221818 CACTCAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:223524 original size:475 final size:474
Alignment explanation
Indices: 222632--224381 Score: 2229
Period size: 475 Copynumber: 3.7 Consensus size: 474
222622 AGAGCTTACA
* * * *
222632 GTGTTTATAGCGCCTAATCACAAAATAAGTGTAGATTATTAGTAGAATCCATGTTTGCCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATAAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTT
* *
222697 GAGGCAAAAACTTAGACTTTACAAAAATTGGTGGGAAAATGCCTTTCTTGCGAAACCAAAGCATT
66 GAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAGCATT
**
222762 AATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGTGTAATCCGGAAAAGAATGGGCATTA
131 AATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCGGAAAAGAATGGGCATTA
222827 GTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAG
196 GTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAG
* *
222892 AAAAGCTTTTCTTGCGACACCAAAGCATTAATGTCATGTATCCTAATGAGGGGAATGTGTTTTGG
261 AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
* * * * *
222957 TTCCCAATCTTGAAAAGGATGGAGGCTATTACGAGAATCAATGCTTATCTTATTTAAGGTAAAAA
326 TTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTATCTTATTTAAGGTAAGAA
* * * *
223022 CTTTGATTTAAAGAAAAATAGGGCAAAGAAAATATTTCCATGCAAAAGAAAACCATCAATATCGT
391 CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAAAATCATCAATATCAT
223087 TTATCCTACTAAGGAGAAT
456 TTATCCTACTAAGGAGAAT
* * * *
223106 GTGTTTATAGTGCCTAAACACAAAATGAGTGAAGATCATTAGTAGAATCTA-GTTTTGTCTAATT
1 GTGTTTATAGTGCCTAATCACAAAATAAGTGAAGATCATTAGTAGAATCCATG-TTTGTCTCATT
* * *
223170 TGAGGTACGAACTTAGACTTTACAAAAATTGGTTGGAAAAAAT-CCTTTCTTGTGAAACCAAAGC
65 TGAGGCACAAACTTAGACTTTACAAAAATTGG-TGG-AAAAATGCCTTTCTTGCGAAACCAAAGC
**
223234 ATTAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGTGTAATCCGGAAAAGAATGGGCA
128 ATTAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCGGAAAAGAATGGGCA
223299 TTAGTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
193 TTAGTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* * * * *
223364 AAGAAAAGCTTTTCTTGTGACTCCAAAGCATCAATGCCATATATCCTAATGAAGTGAATGTGTTT
258 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTT
* * * * *
223429 TGGTTCCCAATCTTGAACAGAATTGAAACTGTTACAAGAATCGATGCTTATCTTATTTAAGGTAA
323 TGGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTATCTTATTTAAGGTAA
* * * * *
223494 GAACTTTGATTTAAAGGAAAATATGGCAAAGTAAAGATTTCCATGTAAAATAAAATCATCAATAT
388 GAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAAAATCATCAATAT
223559 CATTTATCCTACTAAGGAGAAT
453 CATTTATCCTACTAAGGAGAAT
* * * *
223581 GTGTTCATA-TGCCTAATCATAAAATAAGTGAAGATCATTTGTAGAATCCACGTTTGTCTCATTT
1 GTGTTTATAGTGCCTAATCACAAAATAAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTT
** ** * *
223645 GAGGCATGAACTTAGTTTTTACAAAAATTGGTGGCAAAAATGCCTTCCTTACGAAACCCAAA-CA
66 GAGGCACAAACTTAGACTTTACAAAAATTGGTGG-AAAAATGCCTTTCTTGCGAAA-CCAAAGCA
* ** * * *
223709 -TCATATCTTGTATCCTAATGAGAAGACCATGTTTATGGTGCCTAATCCTGAAAAGAATGGG-AT
129 TTAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCGGAAAAGAATGGGCAT
* * ** * *
223772 TAGCT-TGACTATTCATTTTTGTCTTAAATAAGAGACGAACTTTGTTTCTATCAAAAA-AGGTGG
194 TAG-TATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACA-GTGG
* * * * *
223835 AAAGAAAAGCATTTTC-TACGACACCAAAGCTTCAGTGTCAT-TATCCTAATAAAAGGAACATGT
257 AAAGAAAAGC-TTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAAT-GAAGGGA-ATGT
* * * * * * *
223898 -TTTTGGTTCCTAATCTTGAAAAGAATAGGGATTATTACGAGCATCGATTCTTGTCTTATTTATG
319 GTTTTGGTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTATCTTATTTAAG
* * * ** *
223962 GGATGAATTTTGATTTATGGGAAAATAGGGCAAAGAAAAGAATTT-CATGCAAAAGAAAATCAAC
384 GTAAGAACTTTGATTTAAAGGAAAATAGGGCAAAGAAAA-AATTTCCATGCAAAAGAAAATCATC
* * * *
224026 AATATCATTTATCCAAATGAGAAGAAT
448 AATATCATTTATCCTACTAAGGAGAAT
* * * ** *
224053 ATGTTTATAGTGCCTAATCATAATATGAA-TGAAGATCAAAACTAGAATCCATGTTTGTCTCATT
1 GTGTTTATAGTGCCTAATCACAAAAT-AAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATT
* *
224117 TGAGGCACAAACTTAGACTTTACAAAAATTGGTTGGAAAAA-GCTTTTCTTGCGAAACC-ACGAC
65 TGAGGCACAAACTTAGACTTTACAAAAATTGG-TGGAAAAATGCCTTTCTTGCGAAACCAAAG-C
* * * ** *
224180 ATCAGTATGATGTATCCTAATGAGAAGACTATGTTTAT-GTGCCTAATCTTGAAAAGAATGGGGA
128 ATTAATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCGGAAAAGAATGGGCA
* * * * * ** *
224244 TTAGTATGAGTATTTATGTATGTATTATTTAAGAGACAAACTTTGATTCTATCAAAAATGGTGAA
193 TTAGTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGA
* **
224309 AAGAAAAGCTTTTTTTGCGACACTGAAGCATCAATGTCATGTA-CCTCAATGAAGGGAATGTGTT
258 AAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCT-AATGAAGGGAATGTG-T
224373 TTTGGTTCC
321 TTTGGTTCC
224382 TGAAAGCTTA
Statistics
Matches: 1106, Mismatches: 144, Indels: 52
0.85 0.11 0.04
Matches are distributed among these distances:
470 1 0.00
471 12 0.01
472 264 0.24
473 274 0.25
474 190 0.17
475 360 0.33
476 5 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (474 bp):
GTGTTTATAGTGCCTAATCACAAAATAAGTGAAGATCATTAGTAGAATCCATGTTTGTCTCATTT
GAGGCACAAACTTAGACTTTACAAAAATTGGTGGAAAAATGCCTTTCTTGCGAAACCAAAGCATT
AATATGATGTATCCTAATGAGAAAACTATGTTTATGGTGCCTAATCCGGAAAAGAATGGGCATTA
GTATGAGTATTCATTTTTATCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACAGTGGAAAG
AAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTGG
TTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTATCTTATTTAAGGTAAGAA
CTTTGATTTAAAGGAAAATAGGGCAAAGAAAAAATTTCCATGCAAAAGAAAATCATCAATATCAT
TTATCCTACTAAGGAGAAT
Found at i:225901 original size:21 final size:21
Alignment explanation
Indices: 225860--225903 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
225850 CTCCCCTTTA
* *
225860 TCTCCCCCGTTTATTAATAAT
1 TCTCCCCCGTTAATCAATAAT
225881 TCTCCCCC-TTAATCAAGTAAT
1 TCTCCCCCGTTAATCAA-TAAT
225902 TC
1 TC
225904 ATATCAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.25, C:0.32, G:0.05, T:0.39
Consensus pattern (21 bp):
TCTCCCCCGTTAATCAATAAT
Found at i:227536 original size:21 final size:21
Alignment explanation
Indices: 227512--227558 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
227502 TTTGATGCTG
227512 ATTTTG-A-TGAAAAACGAAGT
1 ATTTTGAAGTGAAAAAC-AAGT
227532 -TATTTGAAGTGAAAAACAAGT
1 AT-TTTGAAGTGAAAAACAAGT
227553 ATTTTG
1 ATTTTG
227559 CAAAAGATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
19 1 0.04
20 4 0.17
21 9 0.39
22 9 0.39
ACGTcount: A:0.43, C:0.04, G:0.19, T:0.34
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAACAAGT
Found at i:229791 original size:15 final size:15
Alignment explanation
Indices: 229771--229801 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
229761 ATTTCGTTTG
*
229771 GAGCTTCTTCATTTT
1 GAGCTTCCTCATTTT
229786 GAGCTTCCTCATTTT
1 GAGCTTCCTCATTTT
229801 G
1 G
229802 GACATTTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.13, C:0.23, G:0.16, T:0.48
Consensus pattern (15 bp):
GAGCTTCCTCATTTT
Found at i:231629 original size:21 final size:21
Alignment explanation
Indices: 231600--231644 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
231590 AAGTTTTCAT
*
231600 TTTTCTTAGCTAA-TTCATTA
1 TTTTCTTAGCCAACTTCATTA
*
231620 TTTTCATTAGCCAACTTCTTTA
1 TTTTC-TTAGCCAACTTCATTA
231642 TTT
1 TTT
231645 CAACTTGCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 7 0.33
22 9 0.43
ACGTcount: A:0.22, C:0.18, G:0.04, T:0.56
Consensus pattern (21 bp):
TTTTCTTAGCCAACTTCATTA
Found at i:233880 original size:13 final size:13
Alignment explanation
Indices: 233862--233886 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
233852 CAATTTTTTG
233862 TGTATCGATACAT
1 TGTATCGATACAT
233875 TGTATCGATACA
1 TGTATCGATACA
233887 AACTTGCTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:235432 original size:159 final size:156
Alignment explanation
Indices: 234315--236866 Score: 420
Period size: 159 Copynumber: 16.0 Consensus size: 156
234305 GAATCGATGC
* * *
234315 TTGTCTTATTTAAGGGATGAACTTTGATTTTAAAGAAAATTGG-GCAAAGAAAAGATTTTCATGC
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTAA-AAAATAGGTG--AAGAAAAGATTTTCATGC
* * * * * * * *
234379 AAAAGAAAATCATCAATATCATTTATCCTAATTAGGAGAATGTATCTATAGTACATAATAACAAA
63 AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAA
** * * * * *
234444 ATGAGGGAAGATTATTATTCGAATCCACGT
128 A-GAATGAAGATCATTACTAGAAACCATGT
* * * * * * * * * *
234474 TTGTCTCATTTGAGGCATGAACTTAG-TCTTTACAAATATTGGTGGGAA-AAACGCCTTTTC-TG
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA-AAAAATAGGT--GAAGAAAAG-ATTTTCATG
** * * * * * * ** * *
234536 CGAAACCAAAA-TATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTTAATC-CT
62 C-AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCAC-
* * * * **
234599 AAAAAGAAT-AGGGATTAGTA-TGAGTATTCATGT
125 -AAAAGAATGA-AGATCATTACT-AGAAACCATGT
* * * * * * *
234632 TTGTCTTATTTAAGAGACAAACTTTGATTCTATT-GAAAA-CGGTGGAAAGAAAAGCTTTTCTTT
1 TTGTCTTATTTAAGGGATAAACTTTGATT-T-TTAAAAAATAGGT-G-AAGAAAAGATTTTCATG
* * ** * * ** * * *** * **
234695 CGACACCAAAGCATTAATGTCAAGTATCCTATTGAAGG-GAATGTGTTTTTGGAACCCAATCTTG
62 CAAAAAAAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATACTACCTAATC-AC
* * ** * * * *
234759 AAAAGACTGGAGATTGTTACGAGAATCGATGC
125 AAAAGAATGAAGATCATTACTAGAAACCATGT
* * * *
234791 TTGTCTTATTTAAGGAATCAACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCCATGCA
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA-AAAAAT-AGGTGAAGAAAAGATTTTCATGC-
* * * *
234856 AAAAAAAAATCAGT-AATATCCTTTGTCCTAACGAGGAGAATGTGTTTATACTACCTAATCACAA
63 AAAAAAAAAGCA-TCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAA
* *
234920 AATGAACGTAGATCATTACTAGAAACCATGT
127 AA-GAATGAAGATCATTACTAGAAACCATGT
* * * * * ** * * * * * *
234951 TTGTCTCATTTGAGGCACAAACTTAGA-CATCACAAAAATTGGTG-AGAAAAAACCCTTTCTTAC
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA-AAAAATAGGTGAAGAAAAGA--TTTTCATGC
* * ** * * * * * *
235014 GAGACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGA-TGCCTAATC-CTG
63 AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-ACTACCTAATCAC--
* * * **
235077 AAAAGAAT-AAGGATTAGTA-TGAGTATTCATGT
125 AAAAGAATGAA-GATCATTACT-AGAAACCATGT
* *
235109 TTGTCTTATTTAAGAGATAAACTTTGATTTTATAAAAAAT-GGTGGAAAGAAAAGCTTTTCCTAT
1 TTGTCTTATTTAAGGGATAAACTTTGATTTT-TAAAAAATAGGT-G-AAGAAAAGATTTT-C-AT
* ** * * * * ** * * * *
235173 G--ACACCAAAGCATCAATGTCATATATCCTAATGCAGG-GAACGTGTTTTTGGTTCCCATTCTT
61 GCAAAAAAAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATACTACCTAATC-A
* * * * *** *
235235 GAAAAGAATGGAGA-CTATTACAAGGATTGATGC
124 CAAAAGAATGAAGATC-ATTACTAGAAACCATGT
* *
235268 ATGTCTTATTTAAGGGATGAACTTTGATTTTTAAGAAAATAAGGTGAAGAAAAGATTTTCATGCA
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTAA-AAAAT-AGGTGAAGAAAAGATTTTCATGCA
* *
235333 AAAAAAAATCATCAATATCATTTGTCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAAA
64 AAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAAA
* * *
235398 TGAATGCAGATCATTTCTAGAAACCATAT
129 -GAATGAAGATCATTACTAGAAACCATGT
* * * * * *** * *
235427 TTGTCTCATTTGAGGCACGAACCAATATTGGGAAGCCTAACTACAAAAATTGGTGGAA-AAAAGC
1 TTGTCTTATTTAAGGGA-TAA--ACT-TT--G-A---TTTTTA-AAAAATAGGT-GAAGAAAAGA
* * * ** * * * * ** * * *
235491 CTTTCTTAG-GAAACCAAAGCATCAAAATATTATGTATCCTAACGAGAAGGCTATGTTTATAGTG
54 TTTTCAT-GCAAAAAAAAAGCATC--AATATCATTTATCCTAATGAGGAGAATGTGTTTATACTA
** * * ** *
235555 CCTAATC-CTGAAAAGGGTTAAG---ATTAGCTTGACTATTCATAT
116 CCTAATCAC--AAAAGAATGAAGATCATTA-CTAGA--AACCATGT
* * * * * * * * * *
235597 TTGTCTTATATAAGAGACAAACTATGATTCTATCAAAAATGATGG-AAAGAAAAGTTTTTCTTAC
1 TTGTCTTATTTAAGGGATAAACTTTGATT-TTTAAAAAAT-A-GGTGAAGAAAAGATTTTCATGC
* * ** * * * * * * * * * * *
235661 GACACCAAAGTATCAATGTCATGTATCCTAATAAAGG-GAACGTGTTTTGTAGTTCCCAATAATG
63 AAAAAAAAAGCATCAATATCATTTATCCTAAT-GAGGAGAATGTG-TTTATACTACCTAATCA-C
** * * * *
235725 AAAAGAAT-AGAGATTGTTACGAGAATCGATGC
125 AAAAGAATGA-AGATCATTACTAGAAACCATGT
* * * * ** *
235757 TTATCTTATTTATGGGATAAACTTT-AATTTTAAGGGAAATAAGGCAAAGAAAAGATTTTCACGC
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTAA--AAAAT-AGGTGAAGAAAAGATTTTCATGC
* * * * * *
235821 AAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTATTTATAGTACTTAATAACAAA
63 AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAA
* * * * * *
235886 ATAAGGGAAGATTATTAGTAGAATCTATGT
128 AGAA-TGAAGATCATTACTAGAAACCATGT
* * ** * ** * * *
235916 TTGTCTCATTTGAGGGACGAACTTAG-TCTTTGCAAAAATTGGTG-GGAAAA-ATGCCTTTCTTG
1 TTGTCTTATTTAAGGGATAAACTTTGAT-TTTTAAAAAATAGGTGAAGAAAAGAT---TTTCATG
** * * * * * * *
235978 CAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATTTTTATGGC-ACCTAATC-CT
62 CAAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTAT-ACTACCTAATCAC-
* * * ****
236041 AAAAAGAATG-GGATTAGTA-TGAGTGTGCATG-
125 -AAAAGAATGAAGATCATTACT-AGAAACCATGT
* * ** * * *
236072 TTGTCTTATTTAAGAGACAAACTTTGATTCCATCAAAAA-GGGTGGAAAGAAAAGCTTTT-ATTG
1 TTGTCTTATTTAAGGGATAAACTTTGATT-TTTAAAAAATAGGT-G-AAGAAAAGATTTTCA-TG
* * ** * * * ** * *
236135 CGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTGGTTCCCAACTTC-
62 CAAAAAAAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATACTACCTAA--TCA
* * * * * * *
236198 GAAAAGAATGGAGA-CTGTTACGAGAATCGATGC
124 CAAAAGAATGAAGATC-ATTACTAGAAACCATGT
* * * *
236231 GTGTCTCATTTAAGGGATGAACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCTC-TGC
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA-AAAAAT-AGGTGAAGAAAAGATTT-TCATGC
* ** * * *
236295 AAAAGAAAATAATCAATATCATTTGTACTAAT-AGGAGAATGTGTTTATACTGCCTAATCACAAA
63 AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAA
* *
236359 ATGAATGCAGATCATTACTAGAAACCATAT
128 A-GAATGAAGATCATTACTAGAAACCATGT
* * * * ** * * * ** *
236389 TTGTGTCATTTGAGGCACGAACTTAGA-CTTTACAAAAATTGGTGGGAA-AAAAGCCTTTCTTGC
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA-AAAAATAGGT--GAAGAAAAGATTTTCATGC
* * ** * * * * * * ** *
236452 GAGATCAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC-CAGA
63 AAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACA-A
* ** * ** *
236516 AAAAAGTG--G-GGATTAGCTTGATTATTCATAT
127 AAGAA-TGAAGATCATTA-CTAGA--AACCATGT
* * * * * *
236547 TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAAT-GGTGGAAAGAAAAGCTTTTCTTGC
1 TTGTCTTATTTAAGGGATAAACTTTGATT-TTTAAAAAATAGGT-G-AAGAAAAGATTTTCATGC
* * ** * * * * ** * * * **
236611 GACACCAAAGCATCAATGTCATCTATCGTAATGAAGG-GAATGTGTTTTTGGTTCCCAAACTTGA
63 AAAAAAAAAGCATCAATATCATTTATCCTAATG-AGGAGAATGTGTTTATACTACCTAATC-ACA
* * * * *
236675 AAAAAAT-AGAGA-CTATT-GTGGGAATCGATGT
126 AAAGAATGA-AGATC-ATTACT-AGAAACCATGT
* ** * *
236706 TTGCCTTATTTGGGGGATGAACTTTGA-TTTTACGAAAAATAGG-GCAAAGAAAAGATTTTAATG
1 TTGTCTTATTTAAGGGATAAACTTTGATTTTTA--AAAAATAGGTG--AAGAAAAGATTTTCATG
* * * * *
236769 CAAAAAAAAATCACCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAA
62 CAAAAAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAA
*
236834 AACGAATGAAGATCATTACTAGAATCCATGT
127 AA-GAATGAAGATCATTACTAGAAACCATGT
236865 TT
1 TT
236867 ATCTAATTAG
Statistics
Matches: 1697, Mismatches: 533, Indels: 326
0.66 0.21 0.13
Matches are distributed among these distances:
155 6 0.00
156 44 0.03
157 156 0.09
158 410 0.24
159 687 0.40
160 216 0.13
161 48 0.03
162 10 0.01
163 6 0.00
164 1 0.00
165 1 0.00
166 2 0.00
167 5 0.00
168 27 0.02
169 15 0.01
170 59 0.03
171 4 0.00
ACGTcount: A:0.37, C:0.13, G:0.18, T:0.31
Consensus pattern (156 bp):
TTGTCTTATTTAAGGGATAAACTTTGATTTTTAAAAAATAGGTGAAGAAAAGATTTTCATGCAAA
AAAAAAGCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAAAGA
ATGAAGATCATTACTAGAAACCATGT
Found at i:236615 original size:475 final size:473
Alignment explanation
Indices: 234270--246697 Score: 8511
Period size: 474 Copynumber: 25.7 Consensus size: 473
234260 GATCCTAACA
* * * * * *
234270 GTTCCCAATCTTGATAAGATTAGAGATTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* **
234335 ACTTTGATTTTAAAGAAAATTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * ** * * *
234400 TTTATCCTAATTAGGAGAATGTATCTATAGTACATAATAACAAAATGAGGGAAGATTATTATTCG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
234465 AATCCACGTTTGTCTCATTTGAGGCATGAACTTAGTCTTTACAAATATTGGTGGGAAAAACGCCT
195 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
** *
234530 TT-TCTGCGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCTTA
260 TTCT-TGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* *
234594 ATCCT-AAAAAGAATAGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
323 ATCCTGAAAAA-AGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
** * * * *
234657 GATTCTATTGAAAACGGTGGAAAGAAAAGCTTTTCTTTCGACACCAAAGCATTAATGTCAAGTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
*
234722 CCTATTGAAGGGAATGTGTTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
** * * * *
234746 GAACCCAATCTTGAAAAGACTGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGAATCA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * *
234811 ACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCCATGCAAAAAAAAAATCAGT-AATAT
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCA-TCAATAT
* * * * * *
234875 CCTTTGTCCTAACGAGGAGAATGTGTTTATACTACCTAATCACAAAATGAACGTAGATCATTACT
128 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACT
* * * * * *
234940 AGAAACCATGTTTGTCTCATTTGAGGCACAAACTTAGACATCACAAAAATTGGTGAGAAAAAACC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * *
235005 CTTTCTTACGAGACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGATGCCT
258 CTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * *
235070 AATCCTGAAAAGAA-TAAGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
322 AATCCTGAAAA-AAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * *
235133 TGATTTTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATGTCATATA
384 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
* *
235198 TCCTAATGCAGGGAACGTGTTTTTG
449 TCCTAATGAAGGGAATGTGTTTTTG
* * * * * *
235223 GTTCCCATTCTTGAAAAGAATGGAGACTATTACAAGGATTGATGCATGTCTTATTTAAGGGATGA
1 GTTCCCA-ACTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** *
235288 ACTTTGATTTTTAA-GAAAATAAGGTGAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATC
65 ACTTTGA-TTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * *
235352 ATTTGTCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAAATGAATGCAGATCATTTCTA
129 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTA
* * * *
235417 GAAACCATATTTGTCTCATTTGAGGCACGAACCAATATTGGGAAGCCTAACTACAAAAATTGGT-
194 GAATCCATGTTTGTCTCATTTGAGGCACGAA-C----TT----AGACT--TTACAAAAATTGGTG
* * *
235481 GGAAAAAAGCCTTTCTTAG-GAAACCAAAGCATCAAAATATTATGTATCCTAACGAGAAGGCTAT
248 GGAAAAAAGCCTTTCTT-GCGAAACCAAAGCATC--AATA-TGTGTATCCTAATGAGAAGACTAT
* ** ** * *
235545 GTTTATAGTGCCTAATCCTGAAAAGGGTTAAGATTAGCTTGACTATTCATATTTGTCTTATATAA
309 GTTTATGGTGCCTAATCCTGAAAAAAG-TGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAA
* * * *
235610 GAGACAAACTATGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTACGACACCAAAGTATC
373 GAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATC
* * *
235675 AATGTCATGTATCCTAATAAAGGGAACGTGTTTTGTA
438 AATGTCATGTATCCTAATGAAGGGAATGTGTTTT-TG
* * * * *
235712 GTTCCCAA-TAATGAAAAGAATAGAGATTGTTACGAGAATCGATGCTTATCTTATTTATGGGATA
1 GTTCCCAACT--TGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * *
235776 AACTTTAATTTTAAGGGAAATAAGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATC
64 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * *
235841 ATTTATCCTAATGAGGAGAATGTATTTATAGTACTTAATAACAAAAT-AAGGGAAGATTATTAGT
129 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAA-TGAAGATCATTACT
* * * * *
235905 AGAATCTATGTTTGTCTCATTTGAGGGACGAACTTAGTCTTTGCAAAAATTGGTGGGAAAAATGC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * **
235970 CTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATTTTTATGGCACCT
258 CTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * *
236035 AATCCT-AAAAAGAATGGGATTAG-TATGAGTGTGCATG-TTGTCTTATTTAAGAGACAAACTTT
322 AATCCTGAAAAA-AGTGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
236097 GATTCCATCAAAAAGGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
236162 CCTAATGAAGGGAATGTGTTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
* *
236186 GTTCCCAACTTCGAAAAGAATGGAGACTGTTACGAGAATCGATGCGTGTCTCATTTAAGGGATGA
1 GTTCCCAACTT-GAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** *
236251 ACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCTC-TGCAAAAGAAAATAATCAATATC
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCATCAATATC
* * * * *
236315 ATTTGTACTAAT-AGGAGAATGTGTTTATACTGCCTAATCACAAAATGAATGCAGATCATTACTA
129 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTA
* * *
236379 GAAACCATATTTGTGTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
194 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * *
236444 TTTCTTGCGAGATCAAAGCATTAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
236509 ATCCAGAAAAAAGTGGGGATTAGCTTGATTATTCATATTTGTCTTATTTAAGAGACAAACTTTGA
323 ATCCTGAAAAAAGT-GGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
236574 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATCTATCG
387 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCC
236639 TAATGAAGGGAATGTGTTTTTG
452 TAATGAAGGGAATGTGTTTTTG
* * * ** * * * **
236661 GTTCCCAAACTTGAAAAAAATAGAGACTATTGTGGGAATCGATGTTTGCCTTATTTGGGGGATGA
1 GTTCCC-AACTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * *
236726 ACTTTGATTTTACGAAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAAATCACCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * *
236791 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACGAATGAAGATCATTACTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * * * *
236856 AATCCATGTTTATCTAATTAGAGGCATGAATTTAGACTTTACAAAAA-TGGCGAGAAAAAAGCCA
195 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * *
236920 TTCTTGGGAAACCAAAGCATCAATATTATGTAT-CTGAATGAGAAGACTATGTTTATGATGCCTA
260 TTCTTGCGAAACCAAAGCATCAATA-TGTGTATCCT-AATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
236984 ATCCTGAAAAGAGTGGGGATTAGCTTGACTATTCATGTTTATATTATATAAGAGACAAACTATGA
323 ATCCTGAAAAAAGT-GGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * * **
237049 TTCTATCAAAAACGGTGGAAAGAAAAGCATTTCCTGTGACACCAAAGCATCAATGTCATGTATCC
387 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCC
237114 TAATGAAGGGAATGTG-TTTTG
452 TAATGAAGGGAATGTGTTTTTG
* *
237135 GCTTCCCAAACTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTTTCTTATTTAAGGGATG
1 G-TTCCC-AACTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * *
237200 AACTTTGATTTTAAGGAAAATATGTCAAAG-AAAGATTTT-AGTGCAAAAGAAAATCATCAACAT
64 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAATCATCAATAT
* * * * * *
237263 CATTTAT-TTGAATGAGGAGGATGTGTATATAGTGCCCAATCACAAAATGAATGAAGATCTTTAC
128 CATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTAC
* * * * *
237327 TACAATCCATGTTTGTCTCATTTGAGGCATGAATTTATACTTTACAAAAATTTGTGGGAAAAAAG
192 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * *
237392 CCTTTCTTGGGAAACCAAAGCATCAATATTGTGTATCCTAATGAAAAGACTATATTTATGGTGCC
257 CCTTTCTTGCGAAACCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
237457 TAATCCTGAAAAGAGTGGGATTAGCTTGACTATTCGTGTTTGTCTTATATAAGAGACAGACTATG
321 TAATCCTGAAAAAAGTGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * *
237522 ATTCTATAAAAAATGGTGGAAA-AAAAGTTTTTAC-TACGACACCAAAGGATCAATGTCATGTAT
386 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTTACGACACCAAAGCATCAATGTCATGTAT
* *
237585 CCTAATGAAGGGAACGTATTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
* * * * * * *
237609 GTTCCCAATATTGAAAAGAATAGAAATTGTTACAAGAATCGATGCTTGTGTTATTTGTA-GGATG
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATG
* * *
237673 AACATTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
64 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * ** * *
237738 ATTTATCCTCAA-GAGGAGAATGTATTTATAGTACTTAA-CAACAAAATGAGGGAAGATTATTAG
129 ATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATC-ACAAAATGAATGAAGATCATTAC
* * * *
237801 TAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGTCTTTATAAAAATTGGTGGGAAAAATG
192 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAG
* * *
237866 CCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATTTTTATGGCGCC
257 CCTTTCTTGCGAAACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* *** * ** * * *** * * * *
237931 TAAT-C-GTAAAAAGATTTTAAT-GCAAAAGA-AAATCATCAATATCATTTATCTAAATAATGAA
321 TAATCCTGAAAAAAG-TGGGATTAGC--TTGACTATTCATGTTTGTC--TTAT-TTAA-GA-GAC
* * * ** ** * * *
237992 AATATGTTTGTAGTGCCCAATCACAAAATAAATGAAGATCATTACTAAAGTCCATGT-TTATC-T
378 AA-A-CTTTG-A-T--TCTATCA-AAAAT-GGTG--GA--A--AGAAAAG--CTTTTCTTA-CGA
**** * * * * ** * *** **
238055 CATTTGAGCCATGAAT-TTATACTTTACAAAAATTTG-TGGGAAAAAAGCCTTT-
426 CACCAAAG-CATCAATGTCAT-GTAT-C-CTAA--TGAAGGG-AATGTGTTTTTG
* *** * * ** * * ** *** * *
238107 CTTAGGAAAC---CAAAGCATCAATATTGTGTATC-CTAAT-GA--AAAGACTATGTTTAAGGTG
1 GTT-CCCAACTTGAAAAGAATGGAGACTGT-TA-CGAGAATCGATGCTTGTCT-TATTTAAGG-G
* ** *** * ** * * ** *
238165 CCT-AA-TTCTGA--AAAGAGTGGGGATTA-GC-TTGATTATTAATGTTTGTTTTATTTAAGAGA
61 -ATGAACTT-TGATTTTA-AG-GAAAATAAGGCAAAGA--A--AA-G-AT-TTTCATGCAAAAGA
* ** *** * * * *
238224 CAAA-CTTTGAT-T-ATTT-TAAAAATGATGGAAAGAAAAGCT-TTTCCT-GTGACACCAAAGCA
115 -AAATCATCAATATCATTTATCCTAATGA-GG--AG-AATG-TGTTT-ATAGT---ACCTAATCA
** * *** * *** * * * * * *
238283 TCAATGTCATAT-ATCCTAATTAAGGGAA--CGTGTTTTTGATTCCCAAACTTGAAAAGAATGGA
170 -CAAAATGA-ATGAAGATCATTACTAGAATCCATG--TTTG--TCTC--ATTTG--AGGCA-CGA
* * * *** *** * * *
238345 GACAGTTATGAGTAT-CGATGCTT-GTCTTATTTAAAGGATGAACTTTGATTTTAAG-GAAAATA
224 -AC--TTA-GACTTTACAAAAATTGGTGGGA---AAA--A--AGCCTT--TCTT--GCG--AA-A
* * * * * * ** * * *
238407 GGGCAAAG-A-AAAGAT-TTTAATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGA
271 --CCAAAGCATCAATATGTGT-ATCCTAATGAGAA-GA-C--TAT-GTTTA------T-------
** * * * *
238469 AGGTGTTTATAGTGCCT-AATTACAAAAT-GAATGAAGTTCATT-ACTAGAATCTATGTTTGTCT
315 -GGTGCCTA-A-T-CCTGAA--A-AAAGTGGGAT-TAG--C-TTGACT--ATTC-ATGTTTGTCT
* * ** ** **
238531 CATTTGACGA-ATGAA-TTCTGACTT-TA-CAAAAATTGGT-GAGAA-AAAAGCCATTCTTGGGA
366 TATTT-AAGAGACAAACTT-TGA-TTCTATCAAAAA-TGGTGGA-AAGAAAAGCTTTTCTTACGA
* * ** * * * * **
238590 AACCAAAGCATCAATATTGTGTATCCGAAT-TAGGAGACTATGTTTAAG
426 CACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTG
* * * * * * * * * * * *
238638 ATGCCTAATCTTGAAAAGAGTATTGTGTATCCG-AATGAGAAGACTATGTTTATGGTGCCTAATC
1 GTTCCCAA-CTTGAAAAGA--ATGGAG-A-CTGTTACGAGAA-TCGATG-CT-T-GT--CTTAT-
* * * * *
238702 CTGAAAAGAGTGGGGAT-AAGC-TTGACTATTCATGTTTGTCTTATATAAGAGACAGACTATGAT
54 -T---TA-A---GGGATGAA-CTTTGA-T-TTTAAG---G---AAAATAAG-G-CA-A--A-G--
** ** * * * * *
238765 TCTATAAAGAACGGTGGAGAGAAAAGCATTTACCGTGACACCAAAGCATCAATGTCATGTATCCT
94 ---A-AAAG-A-TTTTCA-TG-CAA--A---A----G--A--AAATCATCAATATCATTTATCCT
* * * * * ** * ** ** *
238830 AATAAAGAGAACGTGTTTTTA-TTCCTAATCTTGAAAA-CAATGGTGATTGTTA-TGAGAATCAA
138 AATGAGGAGAATGTGTTTATAGTACCTAATC-ACAAAATGAATGAAGATCATTACT-AGAATCCA
* * * * * * ** ** * *
238892 TGCTTATCTTATTT-ATGGGAAGAACTTTGA-TTTGAGGGAAAA-T-AAGGCAAAGAAA-CGATT
201 TGTTTGTCTCATTTGA-GGCACGAACTTAGACTTT-A-CAAAAATTGGTGGGAAA-AAAGC-CTT
* ** ** * * * * * * * *
238952 TCCAT-ATAATAGAAAATCATCAACATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
261 T-CTTGCGAA-ACCAAAGCATCAATAT-GTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
239016 ATCAT-AATATGAA-TGAAGATCAATA-CTAGA--ATCCATGTTTGTCTCATTTAAG-G-CATGA
323 ATCCTGAA-A-AAAGTG-GGAT---TAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACA--A
* * * * *
239074 ACTTAGACTTC-A-CAAAAATTGGTTGGAAAAAGCCTATTGAAAAGGTGCTTAATCCTA--AAAA
380 ACTTTGA-TTCTATCAAAAA-TGG-TGG---AA----A--GAAAA---GCTT-TTCTTACGACAC
* * * * * * * * * * *
239135 GAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-
429 CAA-A-GCATCA--AT--G---TCATG--TATCCTAATGAAG-G--GAA-TGTGTTTTTG
* *** * * **** * * ** * * *
239194 ATTGAAAACGGTGGGAAAA-AAAGCTTTTCT-TTCGACACCAAAGCATTAATGTCAAGTATCCTA
1 GTTCCCAAC--T-TGAAAAGAATG-GAGACTGTT----A-C-GAGAATCGATG-C--TTGTCTTA
* * * *** * ** **** ** * *
239257 TTGAA-GG--GAA-TGTG-TTTT-TGGAACCCAA-TC-TTGAAAAGACTGGAGATTG-TTACGAG
53 TTTAAGGGATGAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGA-TTTTCA-TGCAAAAGAA
* * * * * * * * ** *
239313 AATCGATGC-TTGTC--TTAT-TTAA-G-GAATCAACTTTGATTTTTAGGAAAATAAGGTGA-AG
116 AATC-AT-CAATATCATTTATCCTAATGAGGA-GAA-TGTG-TTTATA-GTACCTAA--TCACA-
* ** ** * * **
239371 AAAAGATTTCCATGCAA-AAAAAAAATCAGTAAT--ATCCTTTGTC-C-TAACGAGG-A-GAATG
172 AAATGA-----ATG-AAGATCATTACT-AG-AATCCAT-GTTTGTCTCAT-TTGAGGCACGAA--
* * * * * * ** *
239429 TGTTTATACTACCTAATCACAAAA-TGAACGT-AGATCATTACTAGAAACCATGT-TTGTCTCAT
225 --CTTAGACT---TTA-CA-AAAATTG---GTGGGA--A--A--A-AAGCC-TTTCTTG-CGAAA
*** * * * * ** * * * *
239491 TTGAGGCA-CAA-ACT-TAGACATCACAAAAATTGGTGAGAAAAAACCCTTTCTTACGAG-ACCA
271 CCAAAGCATCAATA-TGT-G-TATC-C--TAA----TGAG--AAGACTATGT-TTATG-GTGCCT
* * * * * ** ** * * ***
239552 AAGCAT--CAATA-T--GATGTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATCCTGA-A-
322 AATCCTGAAAAAAGTGGGAT-TA-GCT--TGACTATTC-ATG--TTT-GT-CTTATTTAAGAGAC
* ** *** ** *
239610 AAGAATGGGGATTACTATTAGCATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCA
378 AA-ACT-TTGATT-CTA-T--CAAAAATG---GT-GGA---AAGA-A-AAGC-TT--TTCT-T--
* ** * * * *
239675 AAAACGATGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATGTCATGATTCCTAACGAAG
422 ---AC----GACACCAAAG------C-AT-----CAATG--TC-ATG---T-ATCCT-AATGAAG
*
239740 GGAACGTGTTTTTG
460 GGAATGTGTTTTTG
* ** * * *
239754 GTTCCTAATCTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATAA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
*
239819 ACTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * *
239883 TTTATCCTAATGAGGAGAGTGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCATTACTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
239948 AATCCATGCTTGTATCATTTGAGGC-CTGAATTTAGACTTTGCAAAAATTTGTAGG-AAAAAGCC
195 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * *
240011 TTTCTTGGGAAGCCAATGCATCAATATGATGTATCCTAATGAGAAGACTACGTTTATGGTACCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
240076 ATCTTGAAAAGAA-TGGGGATTAG-TATAAGTATTCATGTTTGTCTTATTTCAA-AGACAAACTT
323 ATCCTGAAAA-AAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTT
*** * * *
240138 TGATTCTATCAAAAACCACT-GAAA-AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATTT
384 TGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
*
240201 ATCTTAATGAAGGGAATGTGTTTTTG
448 ATCCTAATGAAGGGAATGTGTTTTTG
* * * * * * * *
240227 GATCCCAATCTGGAAAA-ATATGGAGATTTTTACGAGAACCGATGCTTGTCTTATTTATGAGATA
1 GTTCCCAA-CTTGAAAAGA-ATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
240291 AACTTTGA-TTTGAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAATAGAAAATCATCAACATC
64 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * * *
240355 TTTTATCTTAATGAAGAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACTA
129 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTA
* *
240420 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTTGG-AAAAAGCC
194 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
*
240484 TTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGACTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* *
240549 ATACTGAAAAGAA-TGGGGATTA-CTATGAGC-ATTCATGTTTTTCTTATTTAAGAGACAAACTT
323 ATCCTGAAAA-AAGT-GGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * * **
240611 TGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCCTATAACACCAAAGCATCAATGTCATGTA
384 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
* **
240676 TCTTAATGAAATGAATGTGTTTTTG
449 TCCTAATGAAGGGAATGTGTTTTTG
* * * * *
240701 GTTCCCAATCTTGAAAAGAATGGAGTCTGTTACGAGAATCAATGCCTGTCTTATTTAAGAGATAA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
240766 ACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTAATGTAAAA-AAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * *
240830 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATGAGGTTCAATACTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
240895 AATCCATGCTTGTCTCATTTGAGGC-CTGAATTTAGACTTTGCAAAACTTGGTTGGAAAAAAGTC
195 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * * * *
240959 TTTCTCGAGAAACTAATGCATCAATATGATGCATCCTAATAAGAAGATTATGTTTATGGTGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
241024 TTCCTGAAAAGAA-TGGAGATTAG-TATAAGTATTCATGTTT-TTTGTATTTCAA-AGATAAACT
323 ATCCTGAAAA-AAGTGG-GATTAGCT-TGACTATTCATGTTTGTCT-TATTT-AAGAGACAAACT
* * ** * * *
241085 TTGATTTTATTAAAAACCGTGGAAATAAAAGCTTTTCTTACGACACCAAAGCATCCATGTCATTT
383 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
* *
241150 ATCTTAATGAAGGAAATGTGTTTTTG
448 ATCCTAATGAAGGGAATGTGTTTTTG
* * * * *
241176 GTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAGGCTTATCTTATTTATGAGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
241241 ACTTTGATTTGAGGGGAAATAGGGCAAAGAAAAGA-TTTCTATGCAATAA-AAAATCATCAATAT
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAA-AAGAAAATCATCAATAT
* ** * * * * *
241304 CTTTTATCCTAAAAAGAAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACT
128 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACT
* * ** *
241369 AGAATCCATGTTTGTCTCATTTGAAGAACGAACTTAGACTTTACAAAAATTGGTTAG-AAATAGC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
*
241433 CTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
258 CTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *
241498 ACTCCT-AAAAAGAATGGGGATTAG-TATAAGTATTCATGTTTGCCTTATTTAAGAGACAAACTT
322 AATCCTGAAAAA-AGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * ** *
241561 TGAGTCAATCAAAAAGGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGCCATGTA
384 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTA
*
241626 TCCTAATGAAGAGAATGTGTTTTTG
449 TCCTAATGAAGGGAATGTGTTTTTG
** * ** * * *
241651 GTTCAGAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGACACTTTTCTTATTTAAGGAATGC
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** * * * *
241716 ACTTTGATTTTAAGGAAAATCGGGCAAA-AAAAGATTTTAATGTAAAA-AAAATCATCAAAATCT
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * *
241779 TTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * * *
241844 AATCTATGTTTCTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTAGTTGG-AAAAACCCT
195 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * *
241908 TTCTTGCAAAACCTAAGCATCAATATGATGTATCCTAATGCGAAGACTATGTTTATGGTGCCTAA
260 TTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
*
241973 TCCTGAAAAGAA-TGAGATTA-CTATGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
324 TCCTGAAAA-AAGTGGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
*** * *
242035 ATTCTATCAAAAACAATGGAAAGAAAAGC-TTTCCTACGACACCAAAGCATCATTGTCATGTATC
386 ATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATC
*
242099 CTAATGAAGGGAACGTGTTTTTG
451 CTAATGAAGGGAATGTGTTTTTG
* *
242122 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATGG
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
242187 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * *
242252 TTTATCCTAATAAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGTTCATTACTAA
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
242317 AATCCATGCTTGTCGCATTTGAGGC-CTAAATTTAGACTTTGCAAAAATTGGTGGGAAAAAAACC
195 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * *
242381 TTTCTTGGGAAATCAATGCATCAATATGATATGTCCTAATGAGAAGACTATGTTTATGGTGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * * *
242446 TTCTTGAAAAGAA-TAGAGATTAG-TATAAGTATTCATGTTTGTCTTACTTAAGAGACAAACTTT
323 ATCCTGAAAA-AAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* ** * * * *
242509 CATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATTTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
* *
242574 CCTAATGAATGGAATGTGTTTTTT
450 CCTAATGAAGGGAATGTGTTTTTG
* * * * * * *
242598 ATTCCCATTCCTGAAAAGAATGGAGATTGTTATGAGAATCGATGGTTGTCTTATTTATGGGATGA
1 GTTCCCA-ACTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * *
242663 ACTTTGA-TTTGAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAATACAAAATCATCAACATC
65 ACTTTGATTTTAAGG-AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * *
242727 TTTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACTA
129 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTA
* * ** * * *
242792 GAATCCATGTTTATCTTATTTGAGATACGAAGTTAGACTTTACAAAAATTGGTTGG-AAAAACCC
194 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* *
242856 TTTCTTGCGAAACCAAAG---C-ATATGATGTATCCTAATGAGAAGACTATGCTTATGTTGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
242917 ATCCTGACAAGAA-TGGGGATTAG-TATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTT
323 ATCCTGA-AAAAAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
242980 GATTCTACCAAAAATGGTGGAAAGAAAAACTTTTCCTGCGACACCAAAGCATCAATGTCATGTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
243045 CCTAATGAAGGGAATGTGTTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
** * *
243069 GTTCAGAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTTTCTTATTTAAGGGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * * *
243134 ACTTTGATTTTAAGAAAAATTGGGCAAAG-AAAGATTTTAATGCAAAAGAAAATCATCAACATCT
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * *
243198 TTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAA
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * *
243263 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAGAAATTGGTTGG-AAAAAGCCT
195 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * * * * *
243327 TTCTTGCGAAACCAAAGCCTTAATATGATGTTTCTTAATGAGAAGACTATATTTATGGTGGCTAA
260 TTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
* *
243392 TCCTGAAAGGAA-TAGGGATTAG-TAAGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTT
324 TCCTGAAA-AAAGT-GGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
243454 GATTCTATCAAAAACGTTGGAAAGAAAAGC-TTTCCTATGACATCAAAGCATCAATGTCATGTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
** *
243518 CCTAATGAAGGGAA-GCATGTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
* * * * *
243541 GTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGAGATGG
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
243606 ACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * *
243671 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGTTCATTACTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * * *
243736 AATCCATGCTTGTCTCATTTAAGGC-CTAAATTTTGACTTTGCAAAAATTGGTGGGAAAAAAGCC
195 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * ** * * *
243800 TTTCTTGGGAAACCAATGCATCGTTATGATATATCCTAATGAGAAGACTACGTTTATGCTGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * * * * **
243865 TTGCT-AAAAAGAATGGAGATTAG-TATAAGTATTCTTATTTGTCTTATTTAAGAGACAAACACT
323 ATCCTGAAAAA-AGTGG-GATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *** * * * *
243928 GA-TATATCAAAAACCATGG-AAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTTATTTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
*
243991 CCTAATGAATGGAATGTGTTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
* * *
244015 GTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT-ATGGATGT
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * *
244079 ACTTTGA-TTTGAGGAAAAATAGGGCAAAGAAAAGATTTCCATAG-AATAGAAAATCATCAACAT
65 ACTTTGATTTTAAGG-AAAATAAGGCAAAGAAAAGATTTTCAT-GCAAAAGAAAATCATCAATAT
* * ** * ** *
244142 CTTTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATCATAATCTGAATGAAGATCAATACT
128 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACT
* * * * * *
244207 ACAATCCATGTTTGTCTTACTTGAGGTACGAACTTAGACTTTACAAAAATTGGCT-AG-AAAAAC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGG-TGGGAAAAAAG
* * *
244270 CCTTTCTTGCGAATCCAAAACATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGTTGCC
257 CCTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
244335 TAATCCTGACAAGAA-TAGGGATTAG-TATGAGTATTCATGATTGTCTTATTTAACAGACAAACT
321 TAATCCTGA-AAAAAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
244398 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACGAAAGCGTCAATGTCATGT
383 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
*
244463 ATCCTAATAAAGGGAATGTGTTTTTG
448 ATCCTAATGAAGGGAATGTGTTTTTG
** ** * * *
244489 GTTCAAAATCTTGAAAAGAATGGAGACTGTTGTGAGAATCAATGCTTATCTT-GTTAATGGGATG
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATG
* * * *
244553 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTAATGCAAAAAAAAAATCATCGACAT
64 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATAT
* * * * * * * * * *
244618 CTTTTATCCTATTAAGGAGAATGTGTTTATAATGCCTAATCATAATATGAATGACGATTAATACT
128 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACT
* * * *
244683 AGAATCCATGTTTGTCTCATTTGAGGCACAAAATTAGACTTTGCAAAAATTGGTTGG--AAAAGC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * *
244746 CTTTCTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTAAGGTGCCT
258 CTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * * *
244811 AATCTTGAAAGAAA-TGGGGATTAG-TATAAGTACTAATGTTTGTCTTATTT-AGAAGACAAAAT
322 AATCCTGAAA-AAAGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAG-AGACAAACT
*** * * **
244873 TTGATTCTATCAAAAACCATGGAAAGAAAA-CTTTTCTTGCAACACCAAAGCATCTGTGTCATGT
383 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
*
244937 ATCCTAATGAAGGGAACGTGTTTTTG
448 ATCCTAATGAAGGGAATGTGTTTTTG
* * *
244963 GTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTGAGGGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * *
245028 ACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCCCTGCAAAAGAAAATCATCAATATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * *
245093 TTTGTCCAAATAAAAGG-G-ATTTGTTTATAGTGCCTAATCACAAAATGAATGCAGATCATTACT
130 TTTATCCTAAT--GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACT
* * * * * *
245156 AAAAACTATGTTTGTCTCATTTGAAGCACGAACTTAGACTTCACAAAAATTGGTTGG-AAAAAGC
193 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
* * * * *
245220 CTTTCTTGTGAAACCAAAGCATCAATATGATGTGTCCTAATAAGAAGACTATATTTTTGGTGCCT
258 CTTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
*
245285 AATCCTGAAAAGAA-TGGGGATTA-CTATTAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACT
322 AATCCTGAAAA-AAGT-GGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * * *
245347 TTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATTAATGTCATG-
383 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGT
* * *
245411 ATTCCTAACGAAGGGAACGTGTTTCTG
448 A-TCCTAATGAAGGGAATGTGTTTTTG
* ** * *
245438 GTTCCTAATCTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
245503 ACTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAACATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * *
245567 TTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * ** *
245632 AATCCATGTTTGTCTCATTTAAGGC-CTGAATTTATCCTTTACAAAAATTGGTGGGAAAAAACCC
195 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
245696 TTTTTTGGGAAACCAAAGCATTAATATTGTGTATCATAATGAGAAGACTATGTTTATGGTGCCT-
259 TTTCTTGCGAAACCAAAGCATCAATA-TGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * * * *
245760 ATCCTGAAAAGAGGGGGGATTAGCTTGACTATTCGTGTTTGTCTTATATAAGAGACAAACTATGA
323 ATCCTGAAAA-AAGTGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* * *
245825 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCATCGATATCATGTATCC
387 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCC
* * *
245890 TAATAAAGAGAACGTGTTTTTG
452 TAATGAAGGGAATGTGTTTTTG
* * * * *
245912 GTTCCCAATCTTAAAAAGAATGGAGACTGTTACTAGAATTGATGCTGGTCTTATTTAAGGGATAA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** * * * * * * *
245977 ACTTTGATTTGGAGGAAAAGAGGGCAAAGAAGAGATTTTCATGCAATAGAAAATCGTCAACATCT
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * *
246042 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-AAATATGATTGAAGATCAATACTA
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAA-ATGAATGAAGATCATTACTA
* * *
246106 GAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTTGG-AAATAGCC
194 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCC
* *
246170 TTTCTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGATGCCTA
259 TTTCTTGCGAAACCAAAGCATCAATATG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
246235 ATCCT-AAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACTTT
323 ATCCTGAAAAA-AGT-GGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
246298 GAGTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
385 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTAT
246363 CCTAATGAAGGGAATGTGTTTTTG
450 CCTAATGAAGGGAATGTGTTTTTG
** ** * * *
246387 GTTCTGAATCTTGAAAAGAATCAAGACTATTACGA-AATCAATGCTTATCTTATTTAAGGGATGA
1 GTTCCCAA-CTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** * *
246451 ACTTTGATTTTAAGGAAAATAAGGTGAAGAGAAGATTTCCATGCAAAAG--AAT-ATC---ATCA
65 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * * **
246510 ---A---T-AGGAAGAGAATGTGTTTATACTGCCTAATCACAAAATAAATGTAGATCATTTTTAG
130 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAG
* * * * *
246568 AAGCCACGTTTATCTCTTTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGG--AAAAGCCT
195 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * * * *
246631 TTCTTGTGAGACAAAAGCGTCAATATGATGCA-CGCTAATGA-AAGGACTATGTTTATGGTGCCT
260 TTCTTGCGAAACCAAAGCATCAATATG-TGTATC-CTAATGAGAA-GACTATGTTTATGGTGCCT
246694 AATC
322 AATC
246698 AGGACATGTT
Statistics
Matches: 9527, Mismatches: 1805, Indels: 1256
0.76 0.14 0.10
Matches are distributed among these distances:
459 3 0.00
460 62 0.01
461 91 0.01
462 4 0.00
465 1 0.00
468 3 0.00
470 165 0.02
471 379 0.04
472 337 0.04
473 1500 0.16
474 2044 0.21
475 2041 0.21
476 830 0.09
477 436 0.05
478 30 0.00
479 33 0.00
480 7 0.00
481 7 0.00
482 1 0.00
484 6 0.00
485 8 0.00
486 32 0.00
487 14 0.00
488 174 0.02
489 185 0.02
490 1 0.00
492 1 0.00
493 16 0.00
494 19 0.00
495 34 0.00
496 9 0.00
497 9 0.00
498 12 0.00
499 11 0.00
500 16 0.00
501 12 0.00
502 5 0.00
503 12 0.00
504 14 0.00
505 24 0.00
506 13 0.00
507 9 0.00
508 3 0.00
509 7 0.00
511 6 0.00
512 4 0.00
513 11 0.00
514 12 0.00
515 12 0.00
516 8 0.00
517 3 0.00
518 2 0.00
519 10 0.00
520 15 0.00
521 12 0.00
522 8 0.00
523 14 0.00
524 10 0.00
525 12 0.00
526 19 0.00
527 16 0.00
528 12 0.00
529 47 0.00
530 21 0.00
531 13 0.00
532 11 0.00
533 20 0.00
534 30 0.00
535 21 0.00
536 18 0.00
537 16 0.00
538 14 0.00
539 7 0.00
540 17 0.00
541 8 0.00
542 15 0.00
543 17 0.00
544 15 0.00
545 13 0.00
546 8 0.00
547 15 0.00
548 12 0.00
549 18 0.00
550 13 0.00
551 18 0.00
552 14 0.00
553 22 0.00
554 29 0.00
555 24 0.00
556 40 0.00
557 33 0.00
558 21 0.00
559 26 0.00
560 18 0.00
561 6 0.00
562 4 0.00
563 5 0.00
564 3 0.00
565 3 0.00
566 2 0.00
567 5 0.00
568 5 0.00
569 4 0.00
570 5 0.00
571 4 0.00
572 1 0.00
573 3 0.00
575 3 0.00
576 2 0.00
577 12 0.00
578 7 0.00
579 3 0.00
581 4 0.00
582 10 0.00
583 6 0.00
584 1 0.00
585 4 0.00
586 5 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (473 bp):
GTTCCCAACTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGAA
CTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCAT
TTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCATTACTAGA
ATCCATGTTTGTCTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGCCTT
TCTTGCGAAACCAAAGCATCAATATGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAATC
CTGAAAAAAGTGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT
ATCAAAAATGGTGGAAAGAAAAGCTTTTCTTACGACACCAAAGCATCAATGTCATGTATCCTAAT
GAAGGGAATGTGTTTTTG
Found at i:237710 original size:474 final size:475
Alignment explanation
Indices: 234270--246697 Score: 8094
Period size: 475 Copynumber: 25.7 Consensus size: 475
234260 GATCCTAACA
* * * * * *
234270 GTTCCCAATCTTGATAAGATTAGAGATTGTAATGAGAATCGATGCTTGTCTTATTTAAGGGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* **
234335 ACTTTGATTTTAAAGAAAATTGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * ** * *
234400 TTTATCCTAATTAGGAGAATGTATCTATAGTACATAATAACAAAATGAGGGAAGAT-TATTATTC
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCT-TTACTA
* * * *
234464 GAATCCACGTTTGTCTCATTTGAGGCATGAACTTAGT-CTTTACAAATATTGGTGGGAAAAACGC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTA-TACTTTACAAAAATTGGTGGGAAAAAAGC
** * *
234528 CTTT-TCTGCGAAACCAAAATATCAATATCGTGTATCCTAATGAGAAGACTATGTTTATGGTGCT
259 CTTTCT-TGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
234592 TAATCCTAAAAAGAATAGGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTT
323 TAATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
** * * * *
234656 TGATTCTATTGAAAACGGTGGAAAGAAAAGCTTTTCTTTCGACACCAAAGCATTAATGTCAAGTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTA
*
234721 TCCTATTGAAGGGAATGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
** * * * * * *
234746 GAACCCAATCTTGAAAAGACTGGAGATTGTTACGAGAATCGATGCTTGTCTTATTTAAGGAATCA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * *
234811 ACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCCATGCAAAAAAAAAATCAGT-AATAT
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCA-TCAATAT
* * * * * * *
234875 CCTTTGTCCTAACGAGGAGAATGTGTTTATACTACCTAATCACAAAATGAACGTAGATCATTACT
129 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACT
* * * * * * *
234940 AGAAACCATGTTTGTCTCATTTGAGGCACAAACTTAGACATCACAAAAATTGGTGAGAAAAAACC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGC
* * *
235005 CTTTCTTACGAGACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGATGCC
259 CTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * *
235069 TAATCCTGAAAAGAATAAGGATTAG-TATGAGTATTCATGTTTGTCTTATTTAAGAGATAAACTT
323 TAATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
235133 TGATTTTATAAAAAATGGTGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATCAATGTCATATA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTA
* *
235198 TCCTAATGCAGGGAACGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
* * * * * * * *
235223 GTTCCCATTCTTGAAAAGAATGGAGACTATTACAAGGATTGATGCATGTCTTATTTAAGGGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** *
235288 ACTTTGATTTTTAA-GAAAATAAGGTGAAGAAAAGATTTTCATGCAAAAAAAAATCATCAATATC
66 ACTTTGA-TTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * *
235352 ATTTGTCCTAATGAGGAGAATGTGTTTATACTACCTAATCACAAAATGAATGCAGATCATTT-CT
130 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATC-TTTACT
* * * *
235416 AGAAACCATATTTGTCTCATTTGAGGCACGAACCAATATTGGGAAGCCTAACTACAAAAATTGGT
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAA-C-TTA-T----A--CT--TTACAAAAATTGGT
* * *
235481 -GGAAAAAAGCCTTTCTTAG-GAAACCAAAGCATCAAAATATTATGTATCCTAACGAGAAGGCTA
248 GGGAAAAAAGCCTTTCTT-GCGAAACCAAAGCATC--AATATTGTGTATCCTAATGAGAAGACTA
* * * * *
235544 TGTTTATAGTGCCTAATCCTGAAAAGGGTTA-AGATTAGCTTGACTATTCATATTTGTCTTATAT
310 TGTTTATGGTGCCTAATCCTGAAAAGAG-TAGGGATTAGCTTGACTATTCATGTTTGTCTTATTT
* * * *
235608 AAGAGACAAACTATGATTCTATCAAAAATGATGGAAAGAAAAGTTTTTCTTACGACACCAAAGTA
374 AAGAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCA
* * *
235673 TCAATGTCATGTATCCTAATAAAGGGAACGTGTTTTGTA
438 TCAATGTCATGTATCCTAATGAAGGGAATGTGTTTT-TG
* * * * *
235712 GTTCCCAATAATGAAAAGAATAGAGATTGTTACGAGAATCGATGCTTATCTTATTTATGGGATAA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
235777 ACTTTAATTTTAAGGGAAATAAGGCAAAGAAAAGATTTTCACGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * *
235842 TTTATCCTAATGAGGAGAATGTATTTATAGTACTTAATAACAAAAT-AAGGGAAGAT-TATTAGT
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAA-TGAAGATCT-TTACT
* * * *
235905 AGAATCTATGTTTGTCTCATTTGAGGGACGAACTTAGT-CTTTGCAAAAATTGGTGGGAAAAATG
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA-TACTTTACAAAAATTGGTGGGAAAAAAG
* * * **
235969 CCTTTCTTGCAAAACCAAAGCATCAATATCGTGTATCCTAATGAGAAGACTATTTTTATGGCACC
258 CCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
236034 TAATCCTAAAAAGAAT-GGGATTAG-TATGAGTGTGCATG-TTGTCTTATTTAAGAGACAAACTT
323 TAATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * *
236096 TGATTCCATCAAAAAGGGTGGAAAGAAAAGCTTTTATTGCGACACCAAAGCATCAATGTCATGTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTA
236161 TCCTAATGAAGGGAATGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
* * * *
236186 GTTCCCAACT-TCGAAAAGAATGGAGACTGTTACGAGAATCGATGCGTGTCTCATTTAAGGGATG
1 GTTCCCAA-TATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* ** *
236250 AACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCTC-TGCAAAAGAAAATAATCAATAT
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTT-TCATGCAAAAGAAAATCATCAATAT
* * * * * *
236314 CATTTGTACTAAT-AGGAGAATGTGTTTATACTGCCTAATCACAAAATGAATGCAGATCATTACT
129 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACT
* * * *
236378 AGAAACCATATTTGTGTCATTTGAGGCACGAACTTAGACTTTACAAAAATTGGTGGGAAAAAAGC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGC
* * *
236443 CTTTCTTGCGAGATCAAAGCATTAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCC
259 CTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * *
236507 TAATCCAGAAAAAAGTGGGGATTAGCTTGATTATTCATATTTGTCTTATTTAAGAGACAAACTTT
323 TAATCCTGAAAAGAGTAGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* *
236572 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCATCTAT
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTAT
*
236637 CGTAATGAAGGGAATGTGTTTTTG
452 CCTAATGAAGGGAATGTGTTTTTG
* * ** * * * **
236661 GTTCCCAA-ACTTGAAAAAAATAGAGACTATTGTGGGAATCGATGTTTGCCTTATTTGGGGGATG
1 GTTCCCAATA-TTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
236725 AACTTTGATTTTACGAAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAAATCACCAATATC
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * *
236790 ATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATTACAAAACGAATGAAGATCATTACTA
130 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTA
* * * * * * * *
236855 GAATCCATGTTTATCTAATTAGAGGCATGAATTTAGACTTTACAAAAA-TGGCGAGAAAAAAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
236919 ATTCTTGGGAAACCAAAGCATCAATATTATGTAT-CTGAATGAGAAGACTATGTTTATGATGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCT-AATGAGAAGACTATGTTTATGGTGCCT
* * * * *
236983 AATCCTGAAAAGAGTGGGGATTAGCTTGACTATTCATGTTTATATTATATAAGAGACAAACTATG
324 AATCCTGAAAAGAGTAGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTG
* * **
237048 ATTCTATCAAAAACGGTGGAAAGAAAAGCATTTCCTGTGACACCAAAGCATCAATGTCATGTATC
389 ATTCTATCAAAAATGGTGGAAAGAAAAGC-TTTTCTACGACACCAAAGCATCAATGTCATGTATC
237113 CTAATGAAGGGAATGTG-TTTTG
453 CTAATGAAGGGAATGTGTTTTTG
* * *
237135 GCTTCCCAA-ACTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTTTCTTATTTAAGGGAT
1 G-TTCCCAATA-TTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGAT
* * *
237199 GAACTTTGATTTTAAGGAAAATATGTCAAAG-AAAGATTTT-AGTGCAAAAGAAAATCATCAACA
64 GAACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCA-TGCAAAAGAAAATCATCAATA
* * * * *
237262 TCATTTAT-TTGAATGAGGAGGATGTGTATATAGTGCCCAATCACAAAATGAATGAAGATCTTTA
128 TCATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTA
* * * *
237326 CTACAATCCATGTTTGTCTCATTTGAGGCATGAATTTATACTTTACAAAAATTTGTGGGAAAAAA
192 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAA
* * *
237391 GCCTTTCTTGGGAAACCAAAGCATCAATATTGTGTATCCTAATGAAAAGACTATATTTATGGTGC
257 GCCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * *
237456 CTAATCCTGAAAAGAGT-GGGATTAGCTTGACTATTCGTGTTTGTCTTATATAAGAGACAGACTA
322 CTAATCCTGAAAAGAGTAGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * *
237520 TGATTCTATAAAAAATGGTGGAAA-AAAAGTTTTTACTACGACACCAAAGGATCAATGTCATGTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTA
* *
237584 TCCTAATGAAGGGAACGTATTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
* * * * *
237609 GTTCCCAATATTGAAAAGAATAGAAATTGTTACAAGAATCGATGCTTGTGTTATTTGTA-GGATG
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTT-AAGGGATG
* * *
237673 AACATTGACTTTAAGGAAAATAGGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * **
237738 ATTTATCCTCAA-GAGGAGAATGTATTTATAGTACTTAA-CAACAAAATGAGGGAAGAT-TATTA
130 ATTTATCCT-AATGAGGAGAATGTGTTTATAGTACCTAATC-ACAAAATGAATGAAGATCT-TTA
* * *
237800 GTAGAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGT-CTTTATAAAAATTGGTGGGAAAAA
192 CTAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTA-TACTTTACAAAAATTGGTGGGAAAAA
* * * * *
237864 TGCCTTTCTTGCGAAACCAAAACATCAATATCGTGTATCCTAATGAGAAGACTATTTTTATGGCG
256 AGCCTTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTG
* * * * * ** ** * * * **
237929 CCTAATCGTAAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA--TTTATC-TAAATAATGA
321 CCTAATCCTGAAAAGA--GT-AGGGATTAG--CTTGA-CTAT-TCATGTTTGTCTTATTTAA-GA
* * * ** ** *
237991 -A-AATATGTTTGTAGTGCCCAATCACAAAATAAATGAAGATCATTACTAAAGTCCATGTT-TAT
378 GACAA-A-CTTTG-A-T--TCTATCA-AAAAT-GGTG--GA--A--AGAAAAG--C-TTTTCTA-
* **** * * * * ** * *** **
238053 C-TCATTTGAGCCATGAAT-TTATACTTTACAAAAATTTG-TGGGAAAAAAGCCTTT-
425 CGACACCAAAG-CATCAATGTCAT-GTAT-C-CTAA--TGAAGGG-AATGTGTTTTTG
* *** ** * * * ** *** * *
238107 CTTAGGAA-A--CCAAAGCATCA-ATATTGTGTATC-CTAAT-GA--AAAGACTATGTTTAAGGT
1 GTTCCCAATATTGAAAAGAAT-AGAGACTGT-TA-CGAGAATCGATGCTTGTCT-TATTTAAGG-
* ** *** * ** * * ** *
238164 GCCT-AA-TTCTGA--AAAGAGTGGGGATTA-GC-TTGATTATTAATGTTTGTTTTATTTAAGAG
61 G-ATGAACTT-TGATTTTA-AG-GAAAATAAGGCAAAGA--A--AA-G-AT-TTTCATGCAAAAG
* ** *** * *
238223 ACAAA-CTTTGAT-T-ATTT-TAAAAATGATGGAAAGAAAAGCT-TTTCCT-GTGA-C--A-C-C
115 A-AAATCATCAATATCATTTATCCTAATGA-GG--AG-AATG-TGTTT-ATAGT-ACCTAATCAC
* * *** * * * * *
238277 AAAGCATCAATGTCATATATCCTAATTAAGGGAA--CGTGTTTTTGATTCCCAAACTTGAAAAGA
172 AAA--ATGAATG--A-AGAT-CT--TTACTAGAATCCATG--TTTG--TCTC--ATTTG--AGGC
* * * * *** *** * * *
238340 ATGGAGACAGTTATGAGTAT-CGATGCTT-GTCTTATTTAAAGGATGAACTTTGATTTTAAG-GA
221 A-CGA-AC--TTAT-ACTTTACAAAAATTGGTGGGA---AAA--A--AGCCTT--TCTT--GCG-
* ** * * * * *
238402 AAATAGGGCAAAG-AAAAGATTTTAATGCAAAAAAAAATCATCAATATCATTTATCCTAATGAGG
269 -AA-A--CCAAAGCATCA-ATATT-GTG----------T-ATC-CTA--A-TGAG----A--A-G
** * * * ** *
238466 AGAAGGTGTTTATAGTGCCTAAT--TACAAAATGAATGAAGTTCATTA-CTAGA--A-TCTATGT
306 ACTA--TGTTTATGGTGCCTAATCCT-GAAAA-G-A-GTAG-GGATTAGCTTGACTATTC-ATGT
* * ** **
238525 TTGTCTCATTTGACGA-ATGAA-TTCTGACTT-TA-CAAAAATTGGT-GAGAA-AAAAGCCATTC
363 TTGTCTTATTT-AAGAGACAAACTT-TGA-TTCTATCAAAAA-TGGTGGA-AAGAAAAGCTTTTC
** * * ** * * * * **
238584 TTGGGAAACCAAAGCATCAATATTGTGTATCCGAAT-TAGGAGACTATGTTTAAG
423 -TACGACACCAAAGCATCAATGTCATGTATCCTAATGAAGG-GAATGTGTTTTTG
* * * * * * * * * * * * *
238638 ATGCCTAATCTTGAAAAGAGTATTGTGTATCCG-AATGAGAAGACTATGTTTATGGTGCCTAATC
1 GTTCCCAATATTGAAAAGA--ATAGAG-A-CTGTTACGAGAA-TCGATG-CT-T-GT--CTTAT-
* * * * *
238702 CTGAAAAGAGTGGGGAT-AAGC-TTGACTATTCATGTTTGTCTTATATAAGAGACAGACTATGAT
55 -T---TA-A---GGGATGAA-CTTTGA-T-TTTAAG---G---AAAATAAG-G-CA-A--A-G--
** ** * * * * *
238765 TCTATAAAGAACGGTGGAGAGAAAAGCATTTACCGTGACACCAAAGCATCAATGTCATGTATCCT
95 ---A-AAAG-A-TTTTCA-TG-CAA--A---A----G--A--AAATCATCAATATCATTTATCCT
* * * * * ** * ** *
238830 AATAAAGAGAACGTGTTTTTA-TTCCTAATCTTGAAAA-CAATGGTGAT-TGTTA-TGAGAATCA
139 AATGAGGAGAATGTGTTTATAGTACCTAATC-ACAAAATGAATGAAGATCT-TTACT-AGAATCC
* * * * * ** ** * *
238891 ATGCTTATCTTATTT-ATGGGAAGAACTT-TGA-TTTGAGGGAAAA-T-AAGGCAAAGAAA-CGA
201 ATGTTTGTCTCATTTGA-GGCACGAACTTAT-ACTTT-A-CAAAAATTGGTGGGAAA-AAAGC-C
* ** ** * * * * * * *
238950 TTTCCAT-ATAATAGAAAATCATCAACATCT-TTTATCCTAATGAGGAGAATGTGTTTATAGTGC
260 TTT-CTTGCGAA-ACCAAAGCATCAATAT-TGTGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * * *
239013 CTAATCAT-AATATGAAT-GAAGATCAATA-CTAGA--ATCCATGTTTGTCTCATTTAAG-G-CA
322 CTAATCCTGAA-AAGAGTAG-GGAT---TAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACA
* *
239071 TGAACTTAGACTTC-A-CAAAAATTGGTTGGAAAAAGCCTATTGAAAAGGTGCTTAATCCTA--A
382 --AACTTTGA-TTCTATCAAAAA-TGG-TGG---AA----A--GAAAA---GCTT--TTCTACGA
* ** * * * * * * * * * *
239132 AAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCT-
428 CACCAA-A-GCATCA--AT--G---TCATG--TATCCTAATGAAG-G--GAA-TGTGTTTTTG
* *** ** * **** * * * * * * * *
239194 ATTGAAAACGGTGGGAAAA-AA-AGCTTTTCTTTCGA-CACCAAAGCATTAATGTCAAGTATCCT
1 GTTCCCAA-TAT-TGAAAAGAATAGAGACTGTTACGAGAATCGATGC--T--TGTC--TTAT-TT
** * * * * *** * **
239256 ATTGAAGGGAA-TGTG-TTTT-TGGAACCCAATCTTGAAAAGACTGGAGATTGTTACGA-G-AAT
57 AAGGGA-TGAACTTTGATTTTAAGGAA---AATAAGGCAAAGA--AAAGATT-TT-C-ATGCAA-
* **** * * ** * * ** * * *** * *
239316 CGATGCTTGTCTTATTTAAGGAATCAACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTC
112 --AAGAAAATC--A-TCAA--TATC-A-TTT-ATCCTAATGAGGAGAATGTG-TTTATAG--TAC
* ** * * ** * **
239381 C--ATGCAAAAAAAAAATCAGTAATATCCTTTGTCCTAACGAGGA-GAATGTGTT-TATACTACC
164 CTAAT-CACAAAATGAAT--G-AAGAT-C-TT-TACT-A-GA--ATCCATGT-TTGTCT-C-ATT
** * * * * * ** ** * * * ** *
239442 T-AATCACAAAATGA-AC-GTA-GATCATTACT-AGAAACCATGTTTGTCTCATTTGAGGCACAA
215 TGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAA-AAAGCCT-T-TC--TTG-CG-A-AA
* ** * * * * * * *** *
239502 ACTTAGACATCACAAAAATTGGTGAGAAAAAACCCTTTCTTACGAGACCAAAGC-ATCAATATGA
272 CCAAAG-CAT--C-AATATT-GT--G----TA----TCCTAATGAGA--AGA-CTATGTTTATGG
* * * ** * * * * * ** **
239566 TG--T-ATCCTAATGAGAAGACTATGTTTTTG-GTGCCTAATCCTGAAAAGAATGGGGATTACTA
319 TGCCTAATCC---TGAAAAGAGTAGGGATTAGCTTGACT-AT--T--CATG--TTTGTCTTA-T-
** ** ** * *** ** * ** *** *
239627 TT-AGCATTC-ATGTTTGTCTTATT-TAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAG
372 TTAAG-AGACAAACTTTG----ATTCTATCA-A-AAA---TGGTGGAAAGAAAAGCTTTTCTACG
* * * * * * * * *
239689 AAAAGCTTTTCCTATGACACCAAAGCATCAATGTCATGATTCCTAACGAAGGGAACGTGTTTTTG
427 ---A-C---ACCAAAG-CATCAATG--TC-ATG---T-ATCCT-AATGAAGGGAATGTGTTTTTG
* * * ** * * *
239754 GTTCCTAATCTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATAA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
*
239819 ACTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * *
239883 TTTATCCTAATGAGGAGAGTGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCATTACTAG
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * * * * *
239948 AATCCATGCTTGTATCATTTGAGGC-CTGAATTTAGACTTTGCAAAAATTTGTAGG-AAAAAGCC
196 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * *
240011 TTTCTTGGGAAGCCAATGCATCAATA-TGATGTATCCTAATGAGAAGACTACGTTTATGGTACCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *
240075 AATCTTGAAAAGAATGGGGATTAG-TATAAGTATTCATGTTTGTCTTATTTCAA-AGACAAACTT
324 AATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTT-AAGAGACAAACTT
*** * * *
240138 TGATTCTATCAAAAACCACT-GAAA-AAAAGCTTTTCTTGCAACACCAAAGCATCAATGTCATTT
387 TGATTCTATCAAAAA-TGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGT
*
240201 ATCTTAATGAAGGGAATGTGTTTTTG
450 ATCCTAATGAAGGGAATGTGTTTTTG
* * * * * * * * * *
240227 GATCCCAATCTGGAAAA-ATATGGAGATTTTTACGAGAACCGATGCTTGTCTTATTTATGAGATA
1 GTTCCCAATATTGAAAAGA-ATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
* * * * * *
240291 AACTTTGA-TTTGAGGGAAATAGGGCAAAGAAAAGATTTCCATGCAATAGAAAATCATCAACATC
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * * **
240355 TTTTATCTTAATGAAGAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACTA
130 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTA
* * *
240420 GAATCCATGTTTGTCTCATTTGAGGCACAAACTTAGACTTTACAAAAATTGGTTGG-AAAAAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
*
240484 TTTCTTGCGAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGACT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * *
240548 AATACTGAAAAGAATGGGGATTA-CTATGAGC-ATTCATGTTTTTCTTATTTAAGAGACAAACTT
324 AATCCTGAAAAGAGTAGGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * **
240611 TGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCCTATAACACCAAAGCATCAATGTCATGTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTA
* **
240676 TCTTAATGAAATGAATGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
* * * * * * *
240701 GTTCCCAATCTTGAAAAGAATGGAGTCTGTTACGAGAATCAATGCCTGTCTTATTTAAGAGATAA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
240766 ACTTTGATTTTAAGGAAAATAGGGTAAAGAAAAGATTTTAATGTAAAA-AAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * **
240830 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATGAGGTTCAATACTAG
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * * * * *
240895 AATCCATGCTTGTCTCATTTGAGGC-CTGAATTTAGACTTTGCAAAACTTGGTTGGAAAAAAGTC
196 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * * * *
240959 TTTCTCGAGAAACTAATGCATCAATA-TGATGCATCCTAATAAGAAGATTATGTTTATGGTGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * * *
241023 ATTCCTGAAAAGAAT-GGAGATTAG-TATAAGTATTCATGTTT-TTTGTATTTCAA-AGATAAAC
324 AATCCTGAAAAGAGTAGG-GATTAGCT-TGACTATTCATGTTTGTCT-TATTT-AAGAGACAAAC
* * ** * * *
241084 TTTGATTTTATTAAAAACCGTGGAAATAAAAGCTTTTCTTACGACACCAAAGCATCCATGTCATT
385 TTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATG
* *
241149 TATCTTAATGAAGGAAATGTGTTTTTG
449 TATCCTAATGAAGGGAATGTGTTTTTG
* * * * * * *
241176 GTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGAGGCTTATCTTATTTATGAGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * *
241241 ACTTTGATTTGAGGGGAAATAGGGCAAAGAAAAGA-TTTCTATGCAATAA-AAAATCATCAATAT
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTC-ATGCAA-AAGAAAATCATCAATAT
* ** * * * * **
241304 CTTTTATCCTAAAAAGAAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACT
129 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACT
* * * ** *
241369 AGAATCCATGTTTGTCTCATTTGAAGAACGAACTTAGACTTTACAAAAATTGGTTAG-AAATAGC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGC
*
241433 CTTTCTTGTGAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGGTGCC
259 CTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * * * * * *
241497 TACTCCTAAAAAGAATGGGGATTAG-TATAAGTATTCATGTTTGCCTTATTTAAGAGACAAACTT
323 TAATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* * * ** *
241561 TGAGTCAATCAAAAAGGGTGGAAAGAAAAGCTTTTCTTGTGACACCAAAGCATCAATGCCATGTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTA
*
241626 TCCTAATGAAGAGAATGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
** * * * ** * * *
241651 GTTCAGAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGACACTTTTCTTATTTAAGGAATGC
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** * * * *
241716 ACTTTGATTTTAAGGAAAATCGGGCAAA-AAAAGATTTTAATGTAAAA-AAAATCATCAAAATCT
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * **
241779 TTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAG
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * * * * *
241844 AATCTATGTTTCTCTCATTTGAGGCATGAACTTAAACTTTACAAAAATTAGTTGG-AAAAACCCT
196 AATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * *
241908 TTCTTGCAAAACCTAAGCATCAATA-TGATGTATCCTAATGCGAAGACTATGTTTATGGTGCCTA
261 TTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* *
241972 ATCCTGAAAAGAAT-GAGATTA-CTATGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTT
325 ATCCTGAAAAGAGTAGGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
*** * *
242034 GATTCTATCAAAAACAATGGAAAGAAAAGCTTTCCTACGACACCAAAGCATCATTGTCATGTATC
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTACGACACCAAAGCATCAATGTCATGTATC
*
242099 CTAATGAAGGGAACGTGTTTTTG
453 CTAATGAAGGGAATGTGTTTTTG
* * * *
242122 GTTCCCAATCTTGAAAAGAATGGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGAGATGG
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
242187 ACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * * *
242252 TTTATCCTAATAAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGTTCATTACTAA
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * * * * *
242317 AATCCATGCTTGTCGCATTTGAGGC-CTAAATTTAGACTTTGCAAAAATTGGTGGGAAAAAAACC
196 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * * *
242381 TTTCTTGGGAAATCAATGCATCAATA-TGATATGTCCTAATGAGAAGACTATGTTTATGGTGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * * * *
242445 ATTCTTGAAAAGAATAGAGATTAG-TATAAGTATTCATGTTTGTCTTACTTAAGAGACAAACTTT
324 AATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* ** * * * *
242509 CATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCAACACCAAAGCATTAATGTCATTTAT
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTAT
* *
242574 CCTAATGAATGGAATGTGTTTTTT
452 CCTAATGAAGGGAATGTGTTTTTG
* * ** * * * * *
242598 ATTCCCATTCCTGAAAAGAATGGAGATTGTTATGAGAATCGATGGTTGTCTTATTTATGGGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * * *
242663 ACTTTGA-TTTGAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAATACAAAATCATCAACATC
66 ACTTTGATTTTAAGG-AAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * **
242727 TTTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACTA
130 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTA
* * ** * * * *
242792 GAATCCATGTTTATCTTATTTGAGATACGAAGTTAGACTTTACAAAAATTGGTTGG-AAAAACCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* *
242856 TTTCTTGCGAAACCAAAG---C-ATA-TGATGTATCCTAATGAGAAGACTATGCTTATGTTGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *
242916 AATCCTGACAAGAATGGGGATTAG-TATGAGTATTCATATTTGTCTTATTTAAGAGACAAACTTT
324 AATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * *
242980 GATTCTACCAAAAATGGTGGAAAGAAAAACTTTTCCTGCGACACCAAAGCATCAATGTCATGTAT
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTAT
243045 CCTAATGAAGGGAATGTGTTTTTG
452 CCTAATGAAGGGAATGTGTTTTTG
** * * * *
243069 GTTCAGAATCTTGAAAAGAATGGAGACTGTTATGAGAATCGATGCTTTTCTTATTTAAGGGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * * *
243134 ACTTTGATTTTAAGAAAAATTGGGCAAAG-AAAGATTTTAATGCAAAAGAAAATCATCAACATCT
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * ** *
243198 TTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCAATACTAA
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * *
243263 AATCCATGTTTGTCTCATTTGAGGCATGAACTTAGACTTTACAGAAATTGGTTGG-AAAAAGCCT
196 AATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCCT
* * * * * *
243327 TTCTTGCGAAACCAAAGCCTTAATA-TGATGTTTCTTAATGAGAAGACTATATTTATGGTGGCTA
261 TTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
* * *
243391 ATCCTGAAAGGAATAGGGATTAG-TAAGAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACTTT
325 ATCCTGAAAAGAGTAGGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * * *
243454 GATTCTATCAAAAACGTTGGAAAGAAAAGCTTTCCTATGACATCAAAGCATCAATGTCATGTATC
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTACGACACCAAAGCATCAATGTCATGTATC
** *
243519 CTAATGAAGGGAA-GCATGTTTG
453 CTAATGAAGGGAATGTGTTTTTG
* * * * *
243541 GTTCCCAATCTTGAAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGAGATGG
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * *
243606 ACTTTGGTTTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * *
243671 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGTTCATTACTAG
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * * * *
243736 AATCCATGCTTGTCTCATTTAAGGC-CTAAATTTTGACTTTGCAAAAATTGGTGGGAAAAAAGCC
196 AATCCATGTTTGTCTCATTTGAGGCACGAACTTAT-ACTTTACAAAAATTGGTGGGAAAAAAGCC
* * ** * * *
243800 TTTCTTGGGAAACCAATGCATCGTTA-TGATATATCCTAATGAGAAGACTACGTTTATGCTGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * * * * * **
243864 ATTGCTAAAAAGAAT-GGAGATTAG-TATAAGTATTCTTATTTGTCTTATTTAAGAGACAAACAC
324 AATCCTGAAAAGAGTAGG-GATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTT
* *** * * * *
243927 TGA-TATATCAAAAACCATGG-AAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTTATTTA
387 TGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTA
*
243990 TCCTAATGAATGGAATGTGTTTTTG
451 TCCTAATGAAGGGAATGTGTTTTTG
* * * * *
244015 GTTCCCAATCTTGAAAAGAATGGAGATTGTTACGAGAATCGATGCTTGTCTTATTT-ATGGATGT
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* * * * *
244079 ACTTTGA-TTTGAGGAAAAATAGGGCAAAGAAAAGATTTCCATAG-AATAGAAAATCATCAACAT
66 ACTTTGATTTTAAGG-AAAATAAGGCAAAGAAAAGATTTTCAT-GCAAAAGAAAATCATCAATAT
* * ** * ** **
244142 CTTTTATCCTAATAAGGAGAATGTGTTTATAGTGTCTAATCATAATCTGAATGAAGATCAATACT
129 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACT
* * * * * * *
244207 ACAATCCATGTTTGTCTTACTTGAGGTACGAACTTAGACTTTACAAAAATTGGCT-AG-AAAAAC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGG-TGGGAAAAAAG
* * *
244270 CCTTTCTTGCGAATCCAAAACATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGTTGC
258 CCTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * *
244334 CTAATCCTGACAAGAATAGGGATTAG-TATGAGTATTCATGATTGTCTTATTTAACAGACAAACT
322 CTAATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * *
244398 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTGCGACACGAAAGCGTCAATGTCATGT
386 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGT
*
244463 ATCCTAATAAAGGGAATGTGTTTTTG
450 ATCCTAATGAAGGGAATGTGTTTTTG
** * * ** * * *
244489 GTTCAAAATCTTGAAAAGAATGGAGACTGTTGTGAGAATCAATGCTTATCTT-GTTAATGGGATG
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAA-GGGATG
* * * *
244553 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTAATGCAAAAAAAAAATCATCGACAT
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGC-AAAAGAAAATCATCAATAT
* * * * * * * * *
244618 CTTTTATCCTATTAAGGAGAATGTGTTTATAATGCCTAATCATAATATGAATGACGAT-TAATAC
129 CATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCT-TTAC
* * * * *
244682 TAGAATCCATGTTTGTCTCATTTGAGGCACAAAATTAGACTTTGCAAAAATTGGTTGG--AAAAG
193 TAGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAG
* * *
244745 CCTTTCTTGTGAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAAACTATGTTTAAGGTGC
258 CCTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGC
* * * * * * *
244809 CTAATCTTG-AAAGAAATGGGGATTAG-TATAAGTACTAATGTTTGTCTTATTT-AGAAGACAAA
322 CTAATCCTGAAAAG-AGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAG-AGACAAA
* *** * * **
244871 ATTTGATTCTATCAAAAACCATGGAAAGAAAA-CTTTTCTTGCAACACCAAAGCATCTGTGTCAT
384 CTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCAT
*
244935 GTATCCTAATGAAGGGAACGTGTTTTTG
448 GTATCCTAATGAAGGGAATGTGTTTTTG
* * * * *
244963 GTTCCTAATCTTGAAAAGAATGGAGACTATTACGAGAATCGATGCTTGTCTTATTTGAGGGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* ** * *
245028 ACTTTGATTTTTAGGAAAATAAGGTGAAGAAAAGATTTCCCTGCAAAAGAAAATCATCAATATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * * * * *
245093 TTTGTCCAAATAAAAGG-G-ATTTGTTTATAGTGCCTAATCACAAAATGAATGCAGATCATTACT
131 TTTATCCTAAT--GAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACT
* * * * * * *
245156 AAAAACTATGTTTGTCTCATTTGAAGCACGAACTTAGACTTCACAAAAATTGGTTGG-AAAAAGC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGC
* * * * *
245220 CTTTCTTGTGAAACCAAAGCATCAATA-TGATGTGTCCTAATAAGAAGACTATATTTTTGGTGCC
259 CTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCC
* * *
245284 TAATCCTGAAAAGAATGGGGATTA-CTATTAGC-ATTCATGTTTGTCTTATTTAAGAGACAAACT
323 TAATCCTGAAAAGAGTAGGGATTAGCT-TGA-CTATTCATGTTTGTCTTATTTAAGAGACAAACT
* * * *
245347 TTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTTCCTATGACACCAAAGCATTAATGTCATG-
386 TTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGT
* * *
245411 ATTCCTAACGAAGGGAACGTGTTTCTG
450 A-TCCTAATGAAGGGAATGTGTTTTTG
* * * ** * *
245438 GTTCCTAATCTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
* *
245503 ACTTTGATTTTAAGGAAAAT-AGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAACATCA
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * * *
245567 TTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAG
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
* * * *
245632 AATCCATGTTTGTCTCATTTAAGGC-CTGAATTTATCCTTTACAAAAATTGGTGGGAAAAAACCC
196 AATCCATGTTTGTCTCATTTGAGGCAC-GAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* * * *
245696 TTTTTTGGGAAACCAAAGCATTAATATTGTGTATCATAATGAGAAGACTATGTTTATGGTGCCT-
260 TTTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTA
** * * *
245760 ATCCTGAAAAGAGGGGGGATTAGCTTGACTATTCGTGTTTGTCTTATATAAGAGACAAACTATGA
325 ATCCTGAAAAGAGTAGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGA
* *
245825 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCATCGATATCATGTATCC
390 TTCTATCAAAAATGGTGGAAAGAAAAGCTTTT-CTACGACACCAAAGCATCAATGTCATGTATCC
* * *
245890 TAATAAAGAGAACGTGTTTTTG
454 TAATGAAGGGAATGTGTTTTTG
* * * * * * *
245912 GTTCCCAATCTTAAAAAGAATGGAGACTGTTACTAGAATTGATGCTGGTCTTATTTAAGGGATAA
1 GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
** * * * * * * *
245977 ACTTTGATTTGGAGGAAAAGAGGGCAAAGAAGAGATTTTCATGCAATAGAAAATCGTCAACATCT
66 ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
* * **
246042 TTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAATCA-AAATATGATTGAAGATCAATACTA
131 TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAA-ATGAATGAAGATCTTTACTA
* * * *
246106 GAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGACTTTACAAAAATTGGTTGG-AAATAGCC
195 GAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCC
* *
246170 TTTCTTGCAAAACCAAAGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTATGATGCCT
260 TTTCTTGCGAAACCAAAGCATCAATATTG-TGTATCCTAATGAGAAGACTATGTTTATGGTGCCT
* * * * *
246234 AATCCTAAAAAGAATGGGGATTAG-TATGAGTATTCATGTTTGGCTTATTTAAGAGACAAACTTT
324 AATCCTGAAAAGAGTAGGGATTAGCT-TGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTT
* * * *
246298 GAGTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTCTTGTAT
388 GATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTC-TACGACACCAAAGCATCAATGTCATGTAT
246363 CCTAATGAAGGGAATGTGTTTTTG
452 CCTAATGAAGGGAATGTGTTTTTG
** * * * *
246387 GTTCTGAATCTTGAAAAGAATCA-AGACTATTACGA-AATCAATGCTTATCTTATTTAAGGGATG
1 GTTCCCAATATTGAAAAGAAT-AGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATG
** * *
246450 AACTTTGATTTTAAGGAAAATAAGGTGAAGAGAAGATTTCCATGCAAAAG--AAT-ATC---ATC
65 AACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATC
* * * * * * *
246509 A---A---T-AGGAAGAGAATGTGTTTATACTGCCTAATCACAAAATAAATGTAGATCATTT-TT
130 ATTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATC-TTTACT
* * * * * *
246566 AGAAGCCACGTTTATCTCTTTTGAGGTACGAACTTAGACTTTACAAAAATTGGTGGG--AAAAGC
194 AGAATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGC
* * * * *
246629 CTTTCTTGTGAGACAAAAGCGTCAATA-TGATGCA-CGCTAATGA-AAGGACTATGTTTATGGTG
259 CTTTCTTGCGAAACCAAAGCATCAATATTG-TGTATC-CTAATGAGAA-GACTATGTTTATGGTG
246691 CCTAATC
321 CCTAATC
246698 AGGACATGTT
Statistics
Matches: 9507, Mismatches: 1841, Indels: 1224
0.76 0.15 0.10
Matches are distributed among these distances:
459 3 0.00
460 62 0.01
461 89 0.01
462 5 0.00
465 1 0.00
468 3 0.00
470 165 0.02
471 378 0.04
472 346 0.04
473 1467 0.15
474 2041 0.21
475 2054 0.22
476 817 0.09
477 447 0.05
478 30 0.00
479 39 0.00
480 14 0.00
481 10 0.00
482 7 0.00
483 1 0.00
484 4 0.00
485 7 0.00
486 31 0.00
487 17 0.00
488 181 0.02
489 185 0.02
490 2 0.00
492 4 0.00
493 14 0.00
494 22 0.00
495 32 0.00
496 17 0.00
497 19 0.00
498 20 0.00
499 15 0.00
500 18 0.00
501 12 0.00
502 7 0.00
503 4 0.00
504 23 0.00
505 13 0.00
506 9 0.00
507 6 0.00
509 4 0.00
510 1 0.00
511 3 0.00
512 1 0.00
513 2 0.00
514 5 0.00
515 8 0.00
516 4 0.00
517 7 0.00
518 4 0.00
519 2 0.00
520 5 0.00
521 7 0.00
522 3 0.00
523 17 0.00
524 5 0.00
525 12 0.00
526 22 0.00
527 18 0.00
528 15 0.00
529 79 0.01
530 18 0.00
531 10 0.00
532 10 0.00
533 15 0.00
534 20 0.00
535 21 0.00
536 27 0.00
537 12 0.00
538 18 0.00
539 8 0.00
540 12 0.00
541 10 0.00
542 14 0.00
543 18 0.00
544 14 0.00
545 9 0.00
546 11 0.00
547 2 0.00
548 7 0.00
549 13 0.00
550 14 0.00
551 17 0.00
552 18 0.00
553 27 0.00
554 43 0.00
555 14 0.00
556 33 0.00
557 12 0.00
558 11 0.00
559 15 0.00
560 19 0.00
561 15 0.00
562 8 0.00
563 13 0.00
564 6 0.00
565 4 0.00
566 7 0.00
567 8 0.00
568 6 0.00
569 7 0.00
570 6 0.00
571 7 0.00
572 1 0.00
573 3 0.00
575 3 0.00
577 8 0.00
578 1 0.00
579 3 0.00
580 2 0.00
581 5 0.00
582 10 0.00
583 12 0.00
584 3 0.00
585 4 0.00
586 8 0.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.32
Consensus pattern (475 bp):
GTTCCCAATATTGAAAAGAATAGAGACTGTTACGAGAATCGATGCTTGTCTTATTTAAGGGATGA
ACTTTGATTTTAAGGAAAATAAGGCAAAGAAAAGATTTTCATGCAAAAGAAAATCATCAATATCA
TTTATCCTAATGAGGAGAATGTGTTTATAGTACCTAATCACAAAATGAATGAAGATCTTTACTAG
AATCCATGTTTGTCTCATTTGAGGCACGAACTTATACTTTACAAAAATTGGTGGGAAAAAAGCCT
TTCTTGCGAAACCAAAGCATCAATATTGTGTATCCTAATGAGAAGACTATGTTTATGGTGCCTAA
TCCTGAAAAGAGTAGGGATTAGCTTGACTATTCATGTTTGTCTTATTTAAGAGACAAACTTTGAT
TCTATCAAAAATGGTGGAAAGAAAAGCTTTTCTACGACACCAAAGCATCAATGTCATGTATCCTA
ATGAAGGGAATGTGTTTTTG
Found at i:238118 original size:236 final size:236
Alignment explanation
Indices: 237703--238170 Score: 586
Period size: 236 Copynumber: 2.0 Consensus size: 236
237693 TAGGGCAAAG
* * * * *
237703 AAAAGATTTTCATGCAAAAGAAAATCATCAATATCATTTATCCTCAAGAGGAGAATGTATTTATA
1 AAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAGGAAAATATATTTATA
** * * * * * *
237768 GTACTTAACAACAAAATGAGGGAAGATTATTAGTAGAATCCATGTTTGTCTCATTTGAGGCACAA
66 GTACCCAACAACAAAATAAAGGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGCCACAA
* *
237833 ACTTAGTCTTTATAAAAATTGGTGGGAAAAATGCCTTTCTTGCGAAACCAAAACATCAATATCGT
131 ACTTAGTCTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAACATCAATATCGT
* * *
237898 GTATCCTAATGAGAAGACTATTTTTATGGCGCCTAATCGTA
196 GTATCCTAATGAAAAGACTATGTTTAAGGCGCCTAATCGTA
* * *
237939 AAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTAT-CTAAATAATGAAAATATGTTTGT
1 AAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAAA-AAGGAAAATATATTTAT
* *
238003 AGTGCCCAATC-ACAAAATAAATGAAGATCATTACTA-AAGTCCATGTTTATCTCATTTGAGCCA
65 AGTACCCAA-CAACAAAATAAAGGAAGATCATTACTAGAA-TCCATGTTTATCTCATTTGAGCCA
** * * *
238066 TGAATTTA-TACTTTACAAAAATTTGTGGGAAAAAAGCCTTTCTTAG-GAAACCAAAGCATCAAT
128 CAAACTTAGT-CTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTT-GCGAAACCAAAACATCAAT
* *
238129 ATTGTGTATCCTAATGAAAAGACTATGTTTAAGGTGCCTAAT
191 ATCGTGTATCCTAATGAAAAGACTATGTTTAAGGCGCCTAAT
238171 TCTGAAAAGA
Statistics
Matches: 197, Mismatches: 30, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
235 7 0.04
236 188 0.95
237 2 0.01
ACGTcount: A:0.39, C:0.14, G:0.15, T:0.31
Consensus pattern (236 bp):
AAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAAAAAGGAAAATATATTTATA
GTACCCAACAACAAAATAAAGGAAGATCATTACTAGAATCCATGTTTATCTCATTTGAGCCACAA
ACTTAGTCTTTACAAAAATTGGTGGGAAAAAAGCCTTTCTTGCGAAACCAAAACATCAATATCGT
GTATCCTAATGAAAAGACTATGTTTAAGGCGCCTAATCGTA
Found at i:238686 original size:54 final size:54
Alignment explanation
Indices: 238604--238712 Score: 173
Period size: 54 Copynumber: 2.0 Consensus size: 54
238594 AAAGCATCAA
* * *
238604 TATTGTGTATCCGAATTAGGAGACTATGTTTAAGATGCCTAATCTTGAAAAGAG
1 TATTGTGTATCCGAATGAGAAGACTATGTTTAAGATGCCTAATCCTGAAAAGAG
* *
238658 TATTGTGTATCCGAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAG
1 TATTGTGTATCCGAATGAGAAGACTATGTTTAAGATGCCTAATCCTGAAAAGAG
238712 T
1 T
238713 GGGGATAAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.33
Consensus pattern (54 bp):
TATTGTGTATCCGAATGAGAAGACTATGTTTAAGATGCCTAATCCTGAAAAGAG
Found at i:239661 original size:158 final size:157
Alignment explanation
Indices: 239477--246370 Score: 1835
Period size: 159 Copynumber: 43.6 Consensus size: 157
239467 TACTAGAAAC
* * * * *
239477 CATGTTTGTCTCATTTGAG-GCACAAACTTAGACATCACAAAAATTGGTGAGAAAAAACCCTTTC
1 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGACTTCACAAAAATTGGTGAGAAAAAAGCCTTTC
* * * * *
239541 TTACGAGACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATCC
65 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCC
* *
239606 TGAAAAGAATGGGGATTACTATTAGCATT
130 TGAAAAGAATGGGGATTATTATGAG-ATT
* * *
239635 CATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGATG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* ** * * * * * *
239697 TTCCTATGACACCAAAGCATCAATGTCATG-ATTCCTAACGA-AGGGAAC-GTGTTTTTGGTTCC
62 TTCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATGAGA-AG-ACTGTGTTTATGGTGCC
* * ** *
239759 TAATCTTGAAAAGAATGGAGACCATTATGAGAAT
124 TAATCCTGAAAAGAATGGGGATTATTATGAGATT
* * * * * * **
239793 CGATGCTTGTCTTATTTAAGAGATAAACTTTGATTTTA-AGGAAAATAGG-CA-AAGAAAAGATT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACA--AAAATTGGTGAGAA-AAAAGCCT
** * ** * * * * *
239855 TTAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAGTGTGTTTATAGTGCCTAA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAA
* *
239920 TCAC--AAAATGAATGAGG-TTCATTACT-AGAATC
127 TC-CTGAAAA-GAATGGGGATT-ATTA-TGAG-ATT
* * * * * * ** * *
239952 CATGCTTGTATCATTTGAG-GCCTGAA-TTTAGACTTTGCAAAAATTTGT-AGGAAAAAGCCTTT
1 CATGTTTGTCTTATTTAAGAGAC-AAACTTT-GACTTCACAAAAATTGGTGAGAAAAAAGCCTTT
* * * * ** *
240014 CTTGGGAAGCCAATGCATCAATATGATGTATCCTAATGAGAAGACTACGTTTATGGTACCTAATC
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
* * *
240079 TTGAAAAGAATGGGGATTAGTATAAGTATT
129 CTGAAAAGAATGGGGATTATTATGAG-ATT
**** *
240109 CATGTTTGTCTTATTTCAA-AGACAAACTTTGA-TTCTATCAAAAACCACTGA-AAAAAAGCTTT
1 CATGTTTGTCTTATTT-AAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAGAAAAAAGCCTT
* * * * * * *
240171 TCTTGC-AACACCAAAGCATCAATGTCATTTATCTTAATGA-AGGGAATGTGTTTTTGGAT-CCC
63 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGG-TGCCT
* * * **
240233 AAT-CTGGAAAA-ATATGGAGATTTTTACGAGAAC
125 AATCCT-GAAAAGA-ATGGGGATTATTATGAGATT
* * * * * *** * *
240266 CGATGCTTGTCTTATTTATGAGATAAACTTTGATTTGAGGGAAATAGG-GCA-AAGAAAAG-ATT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACAAAAATTGGTG-AGAA-AAAAGCCTT
* ** * * * * * * *
240328 TCCATGC-AATAGAAAATCATCAACATCTTTTATCTTAATGA-AGAGAATGTGTTTATAGTGCCT
63 T-CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCT
* * ** * * *
240391 AATCAT-AATATGAATGAAGATCAATACT-AGAATC
125 AATCCTGAA-AAGAATGGGGATTATTA-TGAG-ATT
* * * *
240425 CATGTTTGTCTCATTTGAG-GCACAAACTTAGACTTTACAAAAATTGGTTG-G-AAAAAGCCTTT
1 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTTT
* * * *
240487 CTTGCGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGACTAATA
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
*
240552 CTGAAAAGAATGGGGATTACTATGAGCATT
129 CTGAAAAGAATGGGGATTATTATGAG-ATT
* * * *
240582 CATGTTTTTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGAT-AGAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* ** * * * * * *
240644 TTCCT-ATAACACCAAAGCATCAATGTCATGTATCTTAATGA-AATGAATGTGTTTTTGGTTCCC
62 TTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAA-GACTGTGTTTATGGTGCCT
* * * * *
240707 AATCTTGAAAAGAATGGAG-TCTGTTACGAGAAT
125 AATCCTGAAAAGAATGGGGAT-TATTATGAGATT
** * * * * **
240740 CAATGCCTGTCTTATTTAAGAGATAAACTTTGATTTTA-AGGAAAATAGG-GTA-AAGAAAAGAT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACA--AAAATTGGTG-AGAA-AAAAGCC
** * ** * * * * *
240802 TTTAATG-TAAAAAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTA
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTA
* * * * *
240866 ATCAT-AAAATAAATGAGG-TTCAATACT-AGAATC
126 ATCCTGAAAA-GAATGGGGATT-ATTA-TGAG-ATT
* * * * * ** * *
240899 CATGCTTGTCTCATTTGAG-GCCTGAA-TTTAGACTTTGCAAAACTTGGTTG-GAAAAAAGTCTT
1 CATGTTTGTCTTATTTAAGAGAC-AAACTTT-GACTTCACAAAAATTGG-TGAGAAAAAAGCCTT
* * * * * * * * * *
240961 TCTCGAGAAACTAATGCATCAATATGATGCATCCTAATAAGAAGATTATGTTTATGGTGCCTATT
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAAT
* * *
241026 CCTGAAAAGAATGGAGATTAGTATAAGTATT
128 CCTGAAAAGAATGGGGATTATTATGAG-ATT
* * * * * ** *
241057 CATGTTT-TTTGTATTTCAA-AGATAAACTTTGATTTTATTAAAAA-CCGTG-GAAATAAAAGCT
1 CATGTTTGTCT-TATTT-AAGAGACAAACTTTGACTTCA-CAAAAATTGGTGAG-AA-AAAAGCC
* * * * * * * *
241118 TTTCTTACGACACCAAAGCATCCATGTCATTTATCTTAATGAAGGAA-A-TGTGTTTTTGGTTCC
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-A-GAAGACTGTGTTTATGGTGCC
* * * * * *
241181 CAATCTTGAAAAGAATGGAGATTGTTACGAGAAT
124 TAATCCTGAAAAGAATGGGGATTATTATGAGATT
* * * * ** * * *** * *
241215 CGAGGCTTATCTTATTTATGAGATGAACTTTGATTTGAGGGGAAATAGG-GCA-AAGAAAAG-AT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCA-CAAAAATTGGTG-AGAA-AAAAGCCT
** * * * ** * *
241277 TTCTATGC-AATAAAAAATCATCAATATCTTTTATCCTAAAAAGAAGAATGTGTTTATAGTGCCT
62 TTCT-TGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCT
* * ** * * *
241341 AATCAT-AATATGAATGAAGATCAATACT-AGAATC
125 AATCCTGAA-AAGAATGGGGATTATTA-TGAG-ATT
* * * * * *
241375 CATGTTTGTCTCATTTGAAGA-ACGAACTTAGACTTTACAAAAATTGGTTAG-AAATAGCCTTTC
1 CATGTTTGTCTTATTT-AAGAGACAAACTTTGACTTCACAAAAATTGGTGAGAAAAAAGCCTTTC
* * * *
241438 TTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGGTGCCTACTCC
65 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCC
* * *
241503 TAAAAAGAATGGGGATTAGTATAAGTATT
130 TGAAAAGAATGGGGATTATTATGAG-ATT
* * * *
241532 CATGTTTGCCTTATTTAAGAGACAAACTTTGA-GTCAATCAAAAA-GGGTG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * ** * * * **
241594 TTCTTGTGACACCAAAGCATCAATGCCATGTATCCTAATGA-AGAGAATGTGTTTTTGGTTCAGA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCTA
* * * * *
241658 ATCTTGAAAAGAATGGAGACTGTTATGAGAAT
126 ATCCTGAAAAGAATGGGGATTATTATGAGATT
** * * * *
241690 CGACACTTT-TCTTATTTAAG-GA-ATGCACTTTGATTTTA-AGGAAAATCGG-GCA-AAAAAAG
1 C-A-TGTTTGTCTTATTTAAGAGACA--AACTTTGACTTCACA--AAAATTGGTG-AGAAAAAAG
** ** * ** * * * * * * * *
241749 ATTTTAATG-TAAAAAAAATCATCAAAATCTTTTATCCTATTGAGGAGAATGTGTTTATAGTGCC
59 CCTTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCC
*** * * *
241813 TAATCAC--AAAATGAATAAAGATCAATACT-AGAAT
124 TAATC-CTGAAAA-GAATGGGGATTATTA-TGAGATT
* * * ** * * *
241847 CTATGTTTCTCTCATTT--GAGGCATGAACTTAAACTTTACAAAAATTAGTTG-G-AAAAACCCT
1 C-ATGTTTGTCTTATTTAAGAGACA--AACTTTGACTTCACAAAAATT-GGTGAGAAAAAAGCCT
* * * * *
241908 TTCTTGCAAAACCTAAGCATCAATATGATGTATCCTAATGCGAAGACTATGTTTATGGTGCCTAA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAA
* *
241973 TCCTGAAAAGAAT-GAGATTACTATGAGCATT
127 TCCTGAAAAGAATGGGGATTATTATGAG-ATT
*
242004 CATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACAAT-G-GA-AAGAAAAG-C
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-C-AAAA-ATTGGTGAGAA-AAAAGCC
* * * * * * * *
242064 TTTCCTACGACACCAAAGCATCATTGTCATGTATCCTAATGA-AGGGAAC-GTGTTTTTGGTTCC
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTGTGTTTATGGTGCC
* * * * * * *
242127 CAATCTTGAAAAGAATGGAGACTGTTACGAGAAT
124 TAATCCTGAAAAGAATGGGGATTATTATGAGATT
* *** * * * **
242161 CGATGCTTGTCTTATTTAAGAGATGGACTTTGATTTTA-AGGAAAATAGG-GCA-AAGAAAAGAT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACA--AAAATTGGTG-AGAA-AAAAGCC
** * ** * * * * * * *
242223 TTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCTTA
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTA
* * * *
242288 ATCAC--AAAATGAATGAGG-TTCATTACTAAAATC
126 ATC-CTGAAAA-GAATGGGGATT-ATTA-TGAGATT
* ** * * ** * *
242321 CATGCTTGTCGCATTTGAG-GCCTAAA-TTTAGACTTTGCAAAAATTGGTGGGAAAAAAACCTTT
1 CATGTTTGTCTTATTTAAGAGAC-AAACTTT-GACTTCACAAAAATTGGTGAGAAAAAAGCCTTT
* * * * * * * *
242384 CTTGGGAAATCAATGCATCAATATGATATGTCCTAATGAGAAGACTATGTTTATGGTGCCTATTC
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
* * * * *
242449 TTGAAAAGAATAGAGATTAGTATAAGTATT
129 CTGAAAAGAATGGGGATTATTATGAG-ATT
* * ** *
242479 CATGTTTGTCTTACTTAAGAGACAAACTTTCA-TTCTATCAAAAA-CCGTG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * * * * * ** * *
242541 TTCTTGC-AACACCAAAGCATTAATGTCATTTATCCTAATGA-ATGGAATGTGTTTTTTATTCCC
62 TTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCT
* * * *
242604 ATTCCTGAAAAGAATGGAGATTGTTATGAGAAT
125 AATCCTGAAAAGAATGGGGATTATTATGAGATT
* * * ** * * * * *
242637 CGATGGTTGTCTTATTTATGGGATGAACTTTGATTTGAGGAAAAATAGG-GCA-AAGAAAAG-AT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCA-CAAAAATTGGTG-AGAA-AAAAGCCT
* * * * * * * * * *
242699 TTCCATGC-AATACAAAATCATCAACATCTTTTATCCTAGTGAGGAGAATGTGTTTATAGTGCCT
62 TT-CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCT
* * ** * * *
242763 AATCAT-AATATGAATGAAGATCAATACT-AGAATC
125 AATCCTGAA-AAGAATGGGGATTATTA-TGAG-ATT
* * * * * * * *
242797 CATGTTTATCTTATTTGAGATACGAAGTTAGACTTTACAAAAATTGGTTG-G-AAAAACCCTTTC
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTTTC
* * * *
242860 TTGCGAAACCAAAG---C-ATATGATGTATCCTAATGAGAAGACTATGCTTATGTTGCCTAATCC
65 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCC
* *
242921 TGACAAGAATGGGGATTAGTATGAGTATT
130 TGAAAAGAATGGGGATTATTATGAG-ATT
* * *
242950 CATATTTGTCTTATTTAAGAGACAAACTTTGA-TTCTACCAAAAA-TGGTG-GAAAGAAAAACTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * * * * * * **
243012 TTCCTGCGACACCAAAGCATCAATGTCATGTATCCTAATGA-AGGGAATGTGTTTTTGGTTCAGA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCTA
* * * * *
243076 ATCTTGAAAAGAATGGAGACTGTTATGAGAAT
126 ATCCTGAAAAGAATGGGGATTATTATGAGATT
* ** * * * * **
243108 CGATGCTTT-TCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATTGG-GCA-AAGAAAGATT
1 C-ATG-TTTGTCTTATTTAAGAGACAAACTTTGA-CTTCACAAAAATTGGTG-AGAAAAAAGCCT
** * ** * * * * * * * *
243170 TTAATGCAAAAGAAAATCATCAACATCTTTTATCCTATTGAGGAGAATGTGTTTATAGTGCCTAA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAA
** * * * * *
243235 TCAC--AAAATGAATGAAGATCAATACTAAAATC
127 TC-CTGAAAA-GAATGGGGATTATTA-TGAGATT
* * * * *
243267 CATGTTTGTCTCATTT--GAGGCATGAACTTAGACTTTACAGAAATTGGTTG-G-AAAAAGCCTT
1 CATGTTTGTCTTATTTAAGAGACA--AACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTT
* * * * * * * *
243328 TCTTGCGAAACCAAAGCCTTAATATGATGTTTCTTAATGAGAAGACTATATTTATGGTGGCTAAT
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAAT
* * * *
243393 CCTGAAAGGAATAGGGATTAGTAAGAGCATT
128 CCTGAAAAGAATGGGGATTATTATGAG-ATT
243424 CATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAACGTT-G-GA-AAGAAAAG-C
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAA--TTGGTGAGAA-AAAAGCC
* ** * * * * *
243484 TTTCCTATGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAAG-C-ATG-TT-TGGTTC
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATG-A--GAAGACTGTGTTTATGGTGC
* * * * * * *
243545 CCAATCTTGAAAAGAATAGAGACTATTACGAGAAT
123 CTAATCCTGAAAAGAATGGGGATTATTATGAGATT
* * *** ** * * **
243580 CGATGCTTGTCTTATTCAAGAGATGGACTTTGGTTTTA-AGGAAAATAGG-GCA-AAGAAAAGAT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACA--AAAATTGGTG-AGAA-AAAAGCC
** * ** * * * * * *
243642 TTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGAGGAGAATGTGTTTATAGTGCTTA
61 TTTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTA
* *
243707 ATCAC--AAAATGAATGAGG-TTCATTACT-AGAATC
126 ATC-CTGAAAA-GAATGGGGATT-ATTA-TGAG-ATT
* * * * ** *
243740 CATGCTTGTCTCATTTAAG-GCCTAAATTTTGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTC
1 CATGTTTGTCTTATTTAAGAGAC-AAACTTTGACTTCACAAAAATTGGTGAGAAAAAAGCCTTTC
* * ** * * ** * * *
243804 TTGGGAAACCAATGCATCGTTATGATATATCCTAATGAGAAGACTACGTTTATGCTGCCTATTGC
65 TTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCC
* * * *
243869 TAAAAAGAATGGAGATTAGTATAAGTATT
130 TGAAAAGAATGGGGATTATTATGAG-ATT
* * ** *** *
243898 CTTATTTGTCTTATTTAAGAGACAAACACTGA-TAT-ATCAAAAA-CCATG-GAAGAAAAGCTTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACT-TCA-CAAAAATTGGTGAGAA-AAAAGCCTT
* * * * * * * * * *
243959 TCTTGCGACACCAAACCATCAATGTTATTTATCCTAATGA-ATGGAATGTGTTTTTGGTTCCCAA
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AGACTGTGTTTATGGTGCCTAA
* * * * *
244023 TCTTGAAAAGAATGGAGATTGTTACGAGAAT
127 TCCTGAAAAGAATGGGGATTATTATGAGATT
* * *** * * * * *
244054 CGATGCTTGTCTTATTTATG-GATGTACTTTGATTTGAGGAAAAATAGG-GCA-AAGAAAAG-AT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCA-CAAAAATTGGTG-AGAA-AAAAGCCT
* * ** * * * * * * * * *
244115 TTCCAT-AGAATAGAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGTCT
62 TT-CTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCT
* ** ** * * * *
244179 AATCAT-AATCTGAATGAAGATCAATACT-ACAATC
125 AATCCTGAA-AAGAATGGGGATTATTA-TGA-GATT
* * * * * *
244213 CATGTTTGTCTTACTTGAG-GTACGAACTTAGACTTTACAAAAATTGGCT-AG-AAAAACCCTTT
1 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTTT
* * * * *
244275 CTTGCGAATCCAAAACATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGTTGCCTAATC
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
* * *
244340 CTGACAAGAATAGGGATTAGTATGAGTATT
129 CTGAAAAGAATGGGGATTATTATGAG-ATT
* * *
244370 CATGATTGTCTTATTTAACAGACAAACTTTGA-TTCTATCAAAAA-TGGTG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * * * * * * * **
244432 TTCCTGCGACACGAAAGCGTCAATGTCATGTATCCTAAT-A-AAGGGAATGTGTTTTTGGTTCAA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTGTGTTTATGGTGCCT
* * * * * *
244495 AATCTTGAAAAGAATGGAGACTGTTGTGAGAAT
125 AATCCTGAAAAGAATGGGGATTATTATGAGATT
* * * * ** * * * * *
244528 CAATGCTTATCTT-GTTAATGGGATGAACTTTGATTTTA-AGGAAAATAAGG-CA-AAGAAAAGA
1 C-ATGTTTGTCTTATTTAA-GAGACAAACTTTGACTTCACA--AAAAT-TGGTGAGAA-AAAAGC
* ** * ** * * * * * * * * * **
244589 TTTTAATGCAAAAAAAAAATCATCGACATCTTTTATCCTATTAAGGAGAATGTGTTTATAATGCC
60 CTTTCTTGC-GAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCC
* * ** * *
244654 TAATCAT-AATATGAATGACGATTAATACT-AGAATC
124 TAATCCTGAA-AAGAATGGGGATTATTA-TGAG-ATT
* * * * **
244689 CATGTTTGTCTCATTTGAG-GCACAAAATTAGACTTTGCAAAAATTGGTTG-G--AAAAGCCTTT
1 CATGTTTGTCTTATTTAAGAG-ACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTTT
* * * * *
244750 CTTGTGAAACCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTAAGGTGCCTAATC
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
* * * *
244815 TTG-AAAGAAATGGGGATTAGTATAAGTACT
129 CTGAAAAG-AATGGGGATTATTATGAG-ATT
* * *** * *
244845 AATGTTTGTCTTATTT-AGAAGACAAAATTTGA-TTCTATCAAAAA-CCATG-GAAAGAAAACTT
1 CATGTTTGTCTTATTTAAG-AGACAAACTTTGACTTC-A-CAAAAATTGGTGAGAAA-AAAGCCT
** * * * *
244906 TTCTTGC-AACACCAAAGCATCTGTGTCATGTATCCTAATGA-AGGGAAC-GTGTTTTTGGTTCC
62 TTCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTGTGTTTATGGTGCC
* * * * *
244968 TAATCTTGAAAAGAATGGAGACTATTACGAGAAT
124 TAATCCTGAAAAGAATGGGGATTATTATGAGATT
* * * ** * * ** * * *
245002 CGATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTTAGGAAAATAAGGTGA-AGAAAAG-ATT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGA-CTTCACAAAAAT-TGGTGAGAAAAAAGCCTT
* * ** * * * * * * *
245065 TCCCTGCAAAAGAAAATCATCAATATCATTTGTCCAAAT-AAAAGGGA-TTTGTTTATAGTGCCT
63 T-CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAA--GACTGTGTTTATGGTGCCT
** * * **
245128 AATCAC--AAAATGAATGCAGATCATTACT-AAAAA
125 AATC-CTGAAAA-GAATGGGGATTATTA-TGAGATT
* * * *
245161 CTATGTTTGTCTCATTTGAAG-CACGAACTTAGACTTCACAAAAATTGGTTG-G-AAAAAGCCTT
1 C-ATGTTTGTCTTATTT-AAGAGACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTT
* * * * * * *
245223 TCTTGTGAAACCAAAGCATCAATATGATGTGTCCTAATAAGAAGACTATATTTTTGGTGCCTAAT
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAAT
* *
245288 CCTGAAAAGAATGGGGATTACTATTAGCATT
128 CCTGAAAAGAATGGGGATTATTATGAG-ATT
* * *
245319 CATGTTTGTCTTATTTAAGAGACAAACTTTGA-TTCTATCAAAAA-CGATG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* ** * * * * * * *
245381 TTCCTATGACACCAAAGCATTAATGTCATG-ATTCCTAACGA-AGGGAAC-GTGTTTCTGGTTCC
62 TTCTTGCGAAACCAAAGCATCAATATCATGTA-TCCTAATGAGA-AG-ACTGTGTTTATGGTGCC
* * ** *
245443 TAATCTTGAAAAGAATGGAGACCATTATGAGAAT
124 TAATCCTGAAAAGAATGGGGATTATTATGAGATT
* ** * * * * **
245477 CGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTA-AGGAAAATAGG-CA-AAGAAAAGATT
1 C-ATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACA--AAAATTGGTGAGAA-AAAAGCCT
** * ** * * * * * * *
245539 TTAATGCAAAAGAAAATCATCAACATCATTTATCTTAATGAGGAGAATGTGTTTATAGTGCCTAA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAA
** * *
245604 TCAC--AAAATGAATGAAGATCATTA-GTAGAATC
127 TC-CTGAAAA-GAATGGGGATTATTATG-AG-ATT
* * * * * *
245636 CATGTTTGTCTCATTTAAG-GCCTGAA-TTT-ATCCTTTACAAAAATTGGTGGGAAAAAACCCTT
1 CATGTTTGTCTTATTTAAGAGAC-AAACTTTGA--CTTCACAAAAATTGGTGAGAAAAAAGCCTT
* * * ** * *
245698 TTTTGGGAAACCAAAGCATTAATATTGTGTATCATAATGAGAAGACTATGTTTATGGTGCCT-AT
63 TCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAAT
** * *
245762 CCTGAAAAGAGGGGGGATTAGCT-TGACTATT
128 CCTGAAAAGAATGGGGATTA-TTATGA-GATT
* * * *
245793 CGTGTTTGTCTTATATAAGAGACAAACTATGA-TTCTATCAAAAA-TGGTG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * * * * * * *
245855 TTCCTACGACACCAAAGCATCGATATCATGTATCCTAAT-AAAGAGAAC-GTGTTTTTGGTTCCC
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGA-AG-ACTGTGTTTATGGTGCCT
* * * * *
245918 AATCTTAAAAAGAATGGAGACTGTTACT-AGAATT
125 AATCCTGAAAAGAATGGGGATTATTA-TGAG-ATT
* * * * * * * ** ** * **
245952 GATGCTGGTCTTATTTAAGGGATAAACTTTGATTTGGAGGAAAAGAGG-GCA-AAGAAGAGATTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTT-CACAAAAATTGGTG-AGAA-AAAAGCCTT
* ** * * * * * * * *
246015 TCATGC-AATAGAAAATCGTCAACATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCCTAA
63 TCTTGCGAA-ACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAA
* * ** * * *
246079 T-C-AAAATATGATTGAAGATCAATACT-AGAATC
127 TCCTGAAA-A-GAATGGGGATTATTA-TGAG-ATT
* * * * * *
246111 CATGTTTGTCTCATTTGAAG-CACGAACTTAGACTTTACAAAAATTGGTTG-G-AAATAGCCTTT
1 CATGTTTGTCTTATTT-AAGAGACAAACTTTGACTTCACAAAAATTGG-TGAGAAAAAAGCCTTT
* * * *
246173 CTTGCAAAACCAAAGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTATGATGCCTAATC
64 CTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATC
* *
246238 CTAAAAAGAATGGGGATTAGTATGAGTATT
129 CTGAAAAGAATGGGGATTATTATGAG-ATT
* * *
246268 CATGTTTGGCTTATTTAAGAGACAAACTTTGA-GTCAATCAAAAA-TGGTG-GAAAGAAAAGCTT
1 CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTC-A-CAAAAATTGGTGAG-AA-AAAAGCCT
* * *
246330 TTCTTGCGACACCAAAGCATCAATGTCTTGTATCCTAATGA
62 TTCTTGCGAAACCAAAGCATCAATATCATGTATCCTAATGA
246371 AGGGAATGTG
Statistics
Matches: 4794, Mismatches: 1494, Indels: 895
0.67 0.21 0.12
Matches are distributed among these distances:
152 6 0.00
153 80 0.02
154 9 0.00
155 41 0.01
156 211 0.04
157 1220 0.25
158 1523 0.32
159 1536 0.32
160 147 0.03
161 20 0.00
162 1 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (157 bp):
CATGTTTGTCTTATTTAAGAGACAAACTTTGACTTCACAAAAATTGGTGAGAAAAAAGCCTTTCT
TGCGAAACCAAAGCATCAATATCATGTATCCTAATGAGAAGACTGTGTTTATGGTGCCTAATCCT
GAAAAGAATGGGGATTATTATGAGATT
Found at i:241750 original size:949 final size:948
Alignment explanation
Indices: 239117--246697 Score: 9580
Period size: 949 Copynumber: 8.0 Consensus size: 948
239107 CTATTGAAAA
* * * *
239117 GGTGCTTAATCCTAAAAAGAATAGGGATTAGTATGAGTATTCATGTTTGTCTTATTTAAGAGACA
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
** * * *
239182 AACTTTGATTCTATTGAAAACGGTGGGAAA-AAAAGCTTTTCTTTCGACACCAAAGCATTAATGT
66 AACTTTGATTCTATCAAAAACCGT-GGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * ** * *
239246 CAAGTATCCTATTGAAGGGAATGTGTTTTTGGAACCCAATCTTGAAAAGACTGGAGATTGTTACG
130 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * **
239311 AGAATCGATGCTTGTCTTATTTAAG-GAATCAACTTTGATTTTTAGGAAAATAAGGTGAAGAAAA
195 AGAATCGATGCTTGTCTTATTTAAGAG-ATGAACTTTGA-TTTGAGGAAAATAGGGCAAAGAAAA
* * * * ** *
239375 GATTTCCATGCAAAAAAAAAATCAGT-AATATCCTTTGTCCTAACGAGGAGAATGTGTTTATACT
258 GATTTCCATGC-AATAAAAAATCA-TCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGT
* * * * * * *
239439 ACCTAATCACAAAATGAACGTAGATCATTACTAGAAACCATGTTTGTCTCATTTGAGGCACAAAC
321 GCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAAC
* * * * *
239504 TTAGACATCACAAAAATTGG-TGAGAAAAAACCCTTTCTTACGAGACCAAAGCATCAATATGATG
386 TTAGACTTTACAAAAATTGGTTG-G-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATG
* * *
239568 TATCCTAATGAGAAGACTATGTTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTACTATTAGCA
449 TATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCA
*
239633 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTT
514 TTCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTT
* * *
239698 TCCTATGACACCAAAGCATCAATGTCATG-ATTCCTAACGAAGGGAACGTGTTTTTGGTTCCTAA
579 TCCTATGACACCAAAGCATCAATGTCATGTA-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAA
* *
239762 TCTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATAAACTTTGAT
643 TCTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGAT
*
239827 TTTAAGGAAAATA-GGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCT
708 TTTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAA-AAAATCATCAACATCATTTATCCT
* *
239891 AATGAGGAGAGTGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCATTACTAGAATCCATG
772 AATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATG
* * * *
239956 CTTGTATCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTTGTAGGAAAAAGCCTTTCTTGGGA
837 TTTGTCTCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGA
* *
240021 AGCCAATGCATCAATATGATGTATCCTAATGAGAAGACTACGTTTAT
902 AACCAATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* *
240068 GGTACCTAATCTTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTCAA-AGAC
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTT-AAGAGAC
* *
240132 AAACTTTGATTCTATCAAAAACCACT-GAAA-AAAAGCTTTTCTTGCAACACCAAAGCATCAATG
65 AAACTTTGATTCTATCAAAAACC-GTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * * * *
240195 TCATTTATCTTAATGAAGGGAATGTGTTTTTGGATCCCAATCTGGAAAA-ATATGGAGATTTTTA
129 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGA-ATGGAGACTGTTA
* * * *
240259 CGAGAACCGATGCTTGTCTTATTTATGAGATAAACTTTGATTTGAGGGAAATAGGGCAAAGAAAA
193 CGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTGAGGAAAATAGGGCAAAGAAAA
* *
240324 GATTTCCATGCAATAGAAAATCATCAACATCTTTTATCTTAATGAA-GAGAATGTGTTTATAGTG
258 GATTTCCATGCAATAAAAAATCATCAACATCTTTTATCCTAAT-AAGGAGAATGTGTTTATAGTG
* * * *
240388 CCTAATCATAATATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAGGCACAAACT
322 CCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACT
240453 TAGACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
387 TAGACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* * * *
240518 CCTAATGAGAAGACTATGTTTATGGTGACTAATACTGAAAAGAATGGGGATTACTATGAGCATTC
452 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTC
* * *
240583 ATGTTTTTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATAGAAAGAAAAGCTTTTCC
517 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCC
* * **
240648 TATAACACCAAAGCATCAATGTCATGTATCTTAATGAAATGAATGTGTTTTTGGTTCCCAATCTT
582 TATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTT
* * * * * *
240713 GAAAAGAATGGAGTCTGTTACGAGAATCAATGCCTGTCTTATTTAAGAGATAAACTTTGATTTTA
647 GAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTA
* * *
240778 AGGAAAATAGGGTAAAGAAAAGATTTTAATGTAAAAAAAATCATCAATATCATTTATCCTAATGA
712 AGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAATCATCAACATCATTTATCCTAATGA
* * *
240843 GGAGAATGTGTTTATAGTGCCTAATCATAAAATAAATGAGGTTCAATACTAGAATCCATGCTTGT
777 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGTTTGT
* * * * *
240908 CTCATTTGAGGCCTGAATTTAGACTTTGCAAAACTTGGTTGGAAAAAAGTCTTTCTCGAGAAACT
842 CTCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGG-AAAAAGCCTTTCTTGGGAAACC
* * *
240973 AATGCATCAATATGATGCATCCTAATAAGAAGATTATGTTTAT
906 AATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * *
241016 GGTGCCTATTCCTGAAAAGAATGGAGATTAGTATAAGTATTCATGTTT-TTTGTATTTCAA-AGA
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCT-TATTT-AAGAGA
* * * * * *
241079 TAAACTTTGATTTTATTAAAAACCGTGGAAATAAAAGCTTTTCTTACGACACCAAAGCATCCATG
64 CAAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * * *
241144 TCATTTATCTTAATGAAGGAAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTAC
129 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * *
241209 GAGAATCGAGGCTTATCTTATTTATGAGATGAACTTTGATTTGAGGGGAAATAGGGCAAAGAAAA
194 GAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTGA-GGAAAATAGGGCAAAGAAAA
* * * *
241274 GATTTCTATGCAATAAAAAATCATCAATATCTTTTATCCTAAAAAGAAGAATGTGTTTATAGTGC
258 GATTTCCATGCAATAAAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGC
* * *
241339 CTAATCATAATATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGAACGAACTT
323 CTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTT
* * *
241404 AGACTTTACAAAAATTGGTTAGAAATAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGTATC
388 AGACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATC
* * *
241469 CTAATGAGAAGACTATGTTTATGGTGCCTACTCCTAAAAAGAATGGGGATTAGTATAAGTATTCA
453 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTCA
* * * * *
241534 TGTTTGCCTTATTTAAGAGACAAACTTTGAGTCAATCAAAAAGGGTGGAAAGAAAAGCTTTTCTT
518 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCT
* * * **
241599 GTGACACCAAAGCATCAATGCCATGTATCCTAATGAAGAGAATGTGTTTTTGGTTCAGAATCTTG
583 ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* ** * *
241664 AAAAGAATGGAGACTGTTATGAGAATCGACACTTTTCTTATTTAAG-GAATGCACTTTGATTTTA
648 AAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAG-ATGAACTTTGATTTTA
* * * * *
241728 AGGAAAATCGGGCAAA-AAAAGATTTTAATGTAAAAAAAATCATCAAAATCTTTTATCCTATTGA
712 AGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAATCATCAACATCATTTATCCTAATGA
* * * * *
241792 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATAAAGATCAATACTAGAATCTATGTTTCT
777 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGTTTGT
* * * * * * **
241857 CTCATTTGAGGCATGAACTTAAACTTTACAAAAATTAGTTGGAAAAACCCTTTCTTGCAAAACCT
842 CTCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGAAACC-
*
241922 AA-GCATCAATATGATGTATCCTAATGCGAAGACTATGTTTAT
906 AATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * *
241964 GGTGCCTAATCCTGAAAAGAAT-GAGATTACTATGAGCATTCATGTTTGTCTTATTTAAGAGACA
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
** * * *
242028 AACTTTGATTCTATCAAAAACAATGGAAAGAAAAGC-TTTCCTACGACACCAAAGCATCATTGTC
66 AACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
*
242092 ATGTATCCTAATGAAGGGAACGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
131 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* *
242157 GAATCGATGCTTGTCTTATTTAAGAGATGGACTTTGATTTTAAGGAAAATAGGGCAAAGAAAAGA
196 GAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGA-TTTGAGGAAAATAGGGCAAAGAAAAGA
** * * *
242222 TTTTAATGCAA-AAGAAAATCATCAATATCATTTATCCTAATAAGGAGAATGTGTTTATAGTGCT
260 TTTCCATGCAATAA-AAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * * * * * * * *
242286 TAATCACAAAATGAATGAGGTTCATTACTAAAATCCATGCTTGTCGCATTTGAGGC-CTAAATTT
324 TAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCAC-GAACTT
* * * * * * * *
242350 AGACTTTGCAAAAATTGGTGGGAAAAAAACCTTTCTTGGGAAATCAATGCATCAATATGATATGT
388 AGACTTTACAAAAATTGGTTGG-AAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTAT
* * * * *
242415 CCTAATGAGAAGACTATGTTTATGGTGCCTATTCTTGAAAAGAATAGAGATTAGTATAAGTATTC
452 CCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTC
* * *
242480 ATGTTTGTCTTACTTAAGAGACAAACTTTCATTCTATCAAAAACCGTGGAAAGAAAAGCTTTT-C
517 ATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCC
* * * ** *
242544 T-TGCAACACCAAAGCATTAATGTCATTTATCCTAATGAATGGAATGTGTTTTTTATTCCCATTC
582 TATG--ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATC
* * * * * *
242608 CTGAAAAGAATGGAGATTGTTATGAGAATCGATGGTTGTCTTATTTATGGGATGAACTTTGA-TT
645 TTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTT
* ** * *
242672 TGAGGAAAAATAGGGCAAAGAAAAGATTTCCATGCAATACAAAATCATCAACATCTTTTATCCTA
710 TAAGG-AAAATAGGGCAAAGAAAAGATTTTAATGCAA-AAAAAATCATCAACATCATTTATCCTA
* * * * *
242737 GTGAGGAGAATGTGTTTATAGTGCCTAATCATAATATGAATGAAGATCAATACTAGAATCCATGT
773 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGT
* * ** * * * *
242802 TTATCTTATTTGAGATAC-GAAGTTAGACTTTACAAAAATTGGTTGGAAAAACCCTTTCTTGCGA
838 TTGTCTCATTTGAG-GCCTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGA
* *
242866 AACCAA---AGC-ATATGATGTATCCTAATGAGAAGACTATGCTTAT
902 AACCAATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * *
242909 GTTGCCTAATCCTGACAAGAATGGGGATTAGTATGAGTATTCATATTTGTCTTATTTAAGAGACA
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
* ** * *
242974 AACTTTGATTCTACCAAAAATGGTGGAAAGAAAAACTTTTCCTGCGACACCAAAGCATCAATGTC
66 AACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
** *
243039 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCAGAATCTTGAAAAGAATGGAGACTGTTATGA
131 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* * * * *
243104 GAATCGATGCTTTTCTTATTTAAGGGATGAACTTTGATTTTAAGAAAAATTGGGCAAAG-AAAGA
196 GAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGA-TTTGAGGAAAATAGGGCAAAGAAAAGA
** * *
243168 TTTTAATGCAA-AAGAAAATCATCAACATCTTTTATCCTATTGAGGAGAATGTGTTTATAGTGCC
260 TTTCCATGCAATAA-AAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* * *
243232 TAATCACAAAATGAATGAAGATCAATACTAAAATCCATGTTTGTCTCATTTGAGGCATGAACTTA
324 TAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTA
* * * * *
243297 GACTTTACAGAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCCTTAATATGATGTTTCT
389 GACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCC
* * * *
243362 TAATGAGAAGACTATATTTATGGTGGCTAATCCTGAAAGGAATAGGGATTAGTA-AGAGCATTCA
454 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATA-AGCATTCA
*
243426 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGTTGGAAAGAAAAGC-TTTCCT
518 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCT
* ** *
243490 ATGACATCAAAGCATCAATGTCATGTATCCTAATGAAGGGAA-GCATGTTTGGTTCCCAATCTTG
583 ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
* * * * *
243554 AAAAGAATAGAGACTATTACGAGAATCGATGCTTGTCTTATTCAAGAGATGGACTTTGGTTTTAA
648 AAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAA
*
243619 GGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAATATCATTTATCCTAATGA
713 GGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAA-AAAATCATCAACATCATTTATCCTAATGA
* * *
243684 GGAGAATGTGTTTATAGTGCTTAATCACAAAATGAATGAGGTTCATTACTAGAATCCATGCTTGT
777 GGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGTTTGT
* * * *
243749 CTCATTTAAGGCCTAAATTTTGACTTTGCAAAAATTGGTGGGAAAAAAGCCTTTCTTGGGAAACC
842 CTCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGG-AAAAAGCCTTTCTTGGGAAACC
** * *
243814 AATGCATCGTTATGATATATCCTAATGAGAAGACTACGTTTAT
906 AATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * * * * * *
243857 GCTGCCTATTGCTAAAAAGAATGGAGATTAGTATAAGTATTCTTATTTGTCTTATTTAAGAGACA
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
** * * * *
243922 AACACTGA-TATATCAAAAACCATGG-AAGAAAAGCTTTTCTTGCGACACCAAACCATCAATGTT
66 AACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
* * *
243985 ATTTATCCTAATGAATGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGATTGTTACGA
131 ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
* *
244050 GAATCGATGCTTGTCTTATTTATG-GATGTACTTTGATTTGAGGAAAAATAGGGCAAAGAAAAGA
196 GAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTGAGG-AAAATAGGGCAAAGAAAAGA
* *
244114 TTTCCATAG-AATAGAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGTC
260 TTTCCAT-GCAATAAAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
* ** * * * * *
244178 TAATCATAATCTGAATGAAGATCAATACTACAATCCATGTTTGTCTTACTTGAGGTACGAACTTA
324 TAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTA
* * * * *
244243 GACTTTACAAAAATTGGCTAGAAAAACCCTTTCTTGCGAATCCAAAACATCAATATGATGTATCC
389 GACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCC
* * * * *
244308 TAATGAGAAGACTATGTTTATGTTGCCTAATCCTGACAAGAATAGGGATTAGTATGAGTATTCAT
454 TAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTCAT
* * * *
244373 GATTGTCTTATTTAACAGACAAACTTTGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTG
519 GTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTA
* * * * **
244438 CGACACGAAAGCGTCAATGTCATGTATCCTAATAAAGGGAATGTGTTTTTGGTTCAAAATCTTGA
584 TGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGA
* * * * * *
244503 AAAGAATGGAGACTGTTGTGAGAATCAATGCTTATCTT-GTTAATGGGATGAACTTTGATTTTAA
649 AAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAA-GAGATGAACTTTGATTTTAA
* * * * *
244567 GGAAAATAAGGCAAAGAAAAGATTTTAATGCAAAAAAAAAATCATCGACATCTTTTATCCTATTA
713 GGAAAATAGGGCAAAGAAAAGATTTTAATGC--AAAAAAAATCATCAACATCATTTATCCTAATG
* * * *
244632 AGGAGAATGTGTTTATAATGCCTAATCATAATATGAATGACGATT-AATACTAGAATCCATGTTT
776 AGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGA-GGTTCAATACTAGAATCCATGTTT
* * *
244696 GTCTCATTTGAGGCAC-AAAATTAGACTTTGCAAAAATTGGTTGG-AAAAGCCTTTCTTGTGAAA
840 GTCTCATTTGAGGC-CTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGAAA
* * *
244759 CCAAAGCATCAATATGATGTATCCTAATGAGAAAACTATGTTTAA
904 CCAATGCATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
* * *
244804 GGTGCCTAATCTTG-AAAGAAATGGGGATTAGTATAAGTACTAATGTTTGTCTTATTT-AGAAGA
1 GGTGCCTAATCCTGAAAAG-AATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAG-AGA
* * * **
244867 CAAAATTTGATTCTATCAAAAACCATGGAAAGAAAA-CTTTTCTTGCAACACCAAAGCATCTGTG
64 CAAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATG
* * *
244931 TCATGTATCCTAATGAAGGGAACGTGTTTTTGGTTCCTAATCTTGAAAAGAATGGAGACTATTAC
129 TCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTAC
* * * * **
244996 GAGAATCGATGCTTGTCTTATTTGAGGGATGAACTTTGATTTTTAGGAAAATAAGGTGAAGAAAA
194 GAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGA-TTTGAGGAAAATAGGGCAAAGAAAA
* * * * * *
245061 GATTTCCCTGCAA-AAGAAAATCATCAATATCATTTGTCCAAATAAAAGG-G-ATTTGTTTATAG
258 GATTTCCATGCAATAA-AAAATCATCAACATCTTTTATCCTAAT--AAGGAGAATGTGTTTATAG
* * * * *
245123 TGCCTAATCACAAAATGAATGCAGATCATTACTAAAAACTATGTTTGTCTCATTTGAAGCACGAA
320 TGCCTAATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAA
* *
245188 CTTAGACTTCACAAAAATTGGTTGGAAAAAGCCTTTCTTGTGAAACCAAAGCATCAATATGATGT
385 CTTAGACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGT
* * * * * *
245253 GTCCTAATAAGAAGACTATATTTTTGGTGCCTAATCCTGAAAAGAATGGGGATTACTATTAGCAT
450 ATCCTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCAT
*
245318 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGATGGAAAGAAAAGCTTTT
515 TCATGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTT
* * * * *
245383 CCTATGACACCAAAGCATTAATGTCATG-ATTCCTAACGAAGGGAACGTGTTTCTGGTTCCTAAT
580 CCTATGACACCAAAGCATCAATGTCATGTA-TCCTAATGAAGGGAATGTGTTTTTGGTTCCCAAT
*
245447 CTTGAAAAGAATGGAGACCATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATT
644 CTTGAAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATT
*
245512 TTAAGGAAAATA-GGCAAAGAAAAGATTTTAATGCAAAAGAAAATCATCAACATCATTTATCTTA
709 TTAAGGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAA-AAAATCATCAACATCATTTATCCTA
* * * *
245576 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAAGATCATTAGTAGAATCCATGT
773 ATGAGGAGAATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGT
* ** * * * *
245641 TTGTCTCATTTAAGGCCTGAATTTATCCTTTACAAAAATTGGTGGGAAAAAACCCTTTTTTGGGA
838 TTGTCTCATTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGG-AAAAAGCCTTTCTTGGGA
* * *
245706 AACCAAAGCATTAATATTG-TGTATCATAATGAGAAGACTATGTTTAT
902 AACCAATGCATCAATA-TGATGTATCCTAATGAGAAGACTATGTTTAT
** * * * *
245753 GGTGCCT-ATCCTGAAAAGAGGGGGGATTAGCT-TGACTATTCGTGTTTGTCTTATATAAGAGAC
1 GGTGCCTAATCCTGAAAAGAATGGGGATTAG-TATAAGTATTCATGTTTGTCTTATTTAAGAGAC
* ** * * * *
245816 AAACTATGATTCTATCAAAAATGGTGGAAAGAAAAGCTTTTCCTACGACACCAAAGCATCGATAT
65 AAACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGT
* * * * *
245881 CATGTATCCTAATAAAGAGAACGTGTTTTTGGTTCCCAATCTTAAAAAGAATGGAGACTGTTACT
130 CATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACG
* * * * * *
245946 AGAATTGATGCTGGTCTTATTTAAGGGATAAACTTTGATTTGGAGGAAAAGAGGGCAAAGAAGAG
195 AGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTT-GAGGAAAATAGGGCAAAGAAAAG
* * * *
246011 ATTTTCATGCAATAGAAAATCGTCAACATCTTTTATCCTAATGAGGAGAATGTGTTTATAGTGCC
259 ATTTCCATGCAATAAAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGCC
*
246076 TAATCA-AAATATGATTGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTT
324 TAATCACAAA-ATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTT
* *
246140 AGACTTTACAAAAATTGGTTGGAAATAGCCTTTCTTGCAAAACCAAAGCATCAATATGATGTATC
388 AGACTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATC
* * * *
246205 CTAATGAGAAGACTATGTTTATGATGCCTAATCCTAAAAAGAATGGGGATTAGTATGAGTATTCA
453 CTAATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTCA
* * * * *
246270 TGTTTGGCTTATTTAAGAGACAAACTTTGAGTCAATCAAAAATGGTGGAAAGAAAAGCTTTTCTT
518 TGTTTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCT
** * **
246335 GCGACACCAAAGCATCAATGTCTTGTATCCTAATGAAGGGAATGTGTTTTTGGTTCTGAATCTTG
583 ATGACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTG
** * * * *
246400 AAAAGAATCAAGACTATTACGA-AATCAATGCTTATCTTATTTAAGGGATGAACTTTGATTTTAA
648 AAAAGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAA
* ** * ** * * *
246464 GGAAAATAAGGTGAAGAGAAGATTTCCATGC-AAAAGAAT-AT---CATCA---A---T-AGGAA
713 GGAAAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAATCATCAACATCATTTATCCTAATGAG
* * * * ** * * *
246517 GAGAATGTGTTTATACTGCCTAATCACAAAATAAATGTA-GATCATTTTTAGAAGCCACGTTTAT
778 GAGAATGTGTTTATAGTGCCTAATCACAAAATGAATG-AGGTTCAATACTAGAATCCATGTTTGT
* * * * * * * *
246581 CTCTTTTGAGGTAC-GAACTTAGACTTTACAAAAATTGG-TGGGAAAAGCCTTTCTTGTGAGACA
842 CTCATTTGAGG-CCTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGAAACC
* * *
246644 AAAGCGTCAATATGATGCA-CGCTAATGA-AAGGACTATGTTTAT
906 AATGCATCAATATGATGTATC-CTAATGAGAA-GACTATGTTTAT
246687 GGTGCCTAATC
1 GGTGCCTAATC
246698 AGGACATGTT
Statistics
Matches: 5789, Mismatches: 749, Indels: 200
0.86 0.11 0.03
Matches are distributed among these distances:
933 5 0.00
934 54 0.01
935 5 0.00
936 88 0.02
937 3 0.00
940 1 0.00
942 2 0.00
943 212 0.04
944 72 0.01
945 227 0.04
946 893 0.15
947 1178 0.20
948 830 0.14
949 1550 0.27
950 586 0.10
951 80 0.01
952 3 0.00
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (948 bp):
GGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGTATTCATGTTTGTCTTATTTAAGAGACA
AACTTTGATTCTATCAAAAACCGTGGAAAGAAAAGCTTTTCTTGCGACACCAAAGCATCAATGTC
ATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAAAGAATGGAGACTGTTACGA
GAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTGAGGAAAATAGGGCAAAGAAAAGAT
TTCCATGCAATAAAAAATCATCAACATCTTTTATCCTAATAAGGAGAATGTGTTTATAGTGCCTA
ATCACAAAATGAATGAAGATCAATACTAGAATCCATGTTTGTCTCATTTGAAGCACGAACTTAGA
CTTTACAAAAATTGGTTGGAAAAAGCCTTTCTTGCGAAACCAAAGCATCAATATGATGTATCCTA
ATGAGAAGACTATGTTTATGGTGCCTAATCCTGAAAAGAATGGGGATTAGTATAAGCATTCATGT
TTGTCTTATTTAAGAGACAAACTTTGATTCTATCAAAAACGGTGGAAAGAAAAGCTTTTCCTATG
ACACCAAAGCATCAATGTCATGTATCCTAATGAAGGGAATGTGTTTTTGGTTCCCAATCTTGAAA
AGAATGGAGACTATTATGAGAATCGATGCTTGTCTTATTTAAGAGATGAACTTTGATTTTAAGGA
AAATAGGGCAAAGAAAAGATTTTAATGCAAAAAAAATCATCAACATCATTTATCCTAATGAGGAG
AATGTGTTTATAGTGCCTAATCACAAAATGAATGAGGTTCAATACTAGAATCCATGTTTGTCTCA
TTTGAGGCCTGAATTTAGACTTTGCAAAAATTGGTTGGAAAAAGCCTTTCTTGGGAAACCAATGC
ATCAATATGATGTATCCTAATGAGAAGACTATGTTTAT
Found at i:253115 original size:79 final size:79
Alignment explanation
Indices: 252953--253151 Score: 204
Period size: 79 Copynumber: 2.5 Consensus size: 79
252943 AATAACAGGG
* * ** * *
252953 TTGGAGTGTTCCCCT-GAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGATTAG
1 TTGGAGT-ATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATTAG
*
253017 AAAAAAAAATCGGGA
65 AAAAAAAAACCGGGA
** *
253032 TTGGAGTATCCTTTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTTG
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA-TTAG
** * * *
253096 GGAATAAAGCCGGGG
65 AAAAAAAAACCGGGA
* * *
253111 TTGGAGTATCCCCTCGGAAGTAATGGGGTTGGAGTATCCCC
1 TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCC
253152 GATGAAATAA
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
78 5 0.05
79 93 0.95
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.26
Consensus pattern (79 bp):
TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATTAGA
AAAAAAAACCGGGA
Found at i:253168 original size:28 final size:28
Alignment explanation
Indices: 253109--253176 Score: 82
Period size: 28 Copynumber: 2.4 Consensus size: 28
253099 ATAAAGCCGG
** * * *
253109 GGTTGGAGTATCCCCTCGGAAGTAATGG
1 GGTTGGAGTATCCCCGAGGAAATAACGA
*
253137 GGTTGGAGTATCCCCGATGAAATAACGA
1 GGTTGGAGTATCCCCGAGGAAATAACGA
253165 GGTTGGAGTATC
1 GGTTGGAGTATC
253177 GTCGATTGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.25, C:0.16, G:0.34, T:0.25
Consensus pattern (28 bp):
GGTTGGAGTATCCCCGAGGAAATAACGA
Found at i:253235 original size:52 final size:51
Alignment explanation
Indices: 253166--253502 Score: 220
Period size: 52 Copynumber: 6.4 Consensus size: 51
253156 AAATAACGAG
** *
253166 GTTGGAGTATCGTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGT-GTTTTGGAAATAAAATCGGA
** * * * *
253218 GTTGGAGTATCCCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTGTTTTGGAAATAAAATC-GGA
* * * *
253271 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGAGATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTGTTTTGGAAATAAAATCGGA
** * *** * * *
253322 GTTGGAGTATCCCC---TCAGAAATAACGGGGTTGGAGTATCCCCGATGAT-TAA-CGGG
1 GTTGGAGTATCCCCGATTGTGAAA-AA-----TTGGTGT-T-TTGGA-AATAAAATCGGA
253377 GTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAA-AAATTGGTG--TTTTGGAAATAAAATCGGA
* * * *
253431 GTTAGAGTATCCCCGATTAT-AGAAAATTAGTGTTTTGAAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGA-AAAATTGGTGTTTTGGAAATAAAATCGGA
* *
253482 GTTGGAATATCCTCGATTGTG
1 GTTGGAGTATCCCCGATTGTG
253503 GAGAATCGAT
Statistics
Matches: 219, Mismatches: 43, Indels: 46
0.71 0.14 0.15
Matches are distributed among these distances:
48 4 0.02
49 3 0.01
51 37 0.17
52 84 0.38
53 30 0.14
54 28 0.13
55 19 0.09
56 4 0.02
57 3 0.01
58 6 0.03
59 1 0.00
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.30
Consensus pattern (51 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTGTTTTGGAAATAAAATCGGA
Found at i:253362 original size:28 final size:27
Alignment explanation
Indices: 253322--253390 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 27
253312 TAAAACCGGA
253322 GTTGGAGTATCCCCTCA-GAAATAACGGG
1 GTTGGAGTATCCCC-CATG-AATAACGGG
* *
253350 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCCATGAATAACGGG
253377 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
253391 GATTGTGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
27 23 0.61
28 15 0.39
ACGTcount: A:0.23, C:0.22, G:0.30, T:0.25
Consensus pattern (27 bp):
GTTGGAGTATCCCCCATGAATAACGGG
Found at i:253405 original size:107 final size:105
Alignment explanation
Indices: 253052--253444 Score: 321
Period size: 107 Copynumber: 3.7 Consensus size: 105
253042 CTTTCGAAAA
* * * * * * * * *
253052 TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCGGAGTTGGAG
* * *
253117 TATCCCCTCGGAAGTAATGGGGTTGGAGTATCCCCGATGAAA
66 TATCCCCTC-GAAATAAAGGGGTTGGAGTATCCCCGATG-AT
* ** * * *
253159 TAACGAGGTTGGAGTATCGTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGT-GTTTTGGAAATAAAACCGGAGTTGGA
* ** * ** **
253224 GTAT-CCC-CG-ATTAAAGGAAAATTGGCGT-T--TTGAAAAT
65 GTATCCCCTCGAAATAAAGG--GGTTGGAGTATCCCCGATGAT
* * * * *
253261 AAAACCAGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGAGATAAAACCGGAGTTG
1 -TAA-CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTAGTGTTTTGGAAATAAAACCGGAGTTG
*
253326 GAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAT
63 GAGTATCCCCTC-GAAATAAAGGGGTTGGAGTATCCCCGATGAT
* * *
253370 TAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAA-AAATTAGTG--TTTTGGAAATAAAACCGGAGTTG
253435 GAGTATCCCC
63 GAGTATCCCC
253445 GATTATAGAA
Statistics
Matches: 218, Mismatches: 52, Indels: 30
0.73 0.17 0.10
Matches are distributed among these distances:
102 1 0.00
103 4 0.02
104 51 0.23
105 15 0.07
106 17 0.08
107 64 0.29
108 33 0.15
109 33 0.15
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (105 bp):
TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTGTTTTGGAAATAAAACCGGAGTTGGAG
TATCCCCTCGAAATAAAGGGGTTGGAGTATCCCCGATGAT
Found at i:253458 original size:212 final size:212
Alignment explanation
Indices: 253099--253504 Score: 611
Period size: 212 Copynumber: 1.9 Consensus size: 212
253089 TATTTTGGGA
* * * * *
253099 ATAAAGCCGGGGTTGGAGTATCCCCTCGGAAGTAATGGGGTTGGAGTATCCCCGATGAAATAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
** *
253164 AGGTTGGAGTATCGTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGAGTATC
66 AGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
* *
253229 CCCGATTAAAGGAAAATTGGCGTTTTGAAAATAAAACCAGGA-TTGGAGTATCCCCGATTGTGGA
131 CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACC-GGAGTTGGAATATCCCCGATTGTGGA
253293 AAAATTAGTGTTTTAGAG
195 AAAATTAGTGTTTTAGAG
*
253311 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATG-ATTAACG
1 ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
* *
253375 GGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTAGAGTA
66 AGGTTGGAGTATCCCCGATTGTGAA-AAATTGGT-ATTTTTGGAAATAAAATCGGAGTTAGAGTA
* * * *
253440 TCCCCGATTATA-GAAAATTAGTGTTTTGAAAATAAAATCGGAGTTGGAATATCCTCGATTGTGG
129 TCCCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGG
253504 A
194 A
253505 GAATCGATAA
Statistics
Matches: 174, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
211 31 0.18
212 104 0.60
213 39 0.22
ACGTcount: A:0.32, C:0.13, G:0.27, T:0.28
Consensus pattern (212 bp):
ATAAAACCGGAGTTGGAGTATCCCCTCAGAAATAACGGGGTTGGAGTATCCCCGATGAAATAACG
AGGTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTAGAGTATC
CCCGATTAAAGGAAAATTAGCGTTTTGAAAATAAAACCGGAGTTGGAATATCCCCGATTGTGGAA
AAATTAGTGTTTTAGAG
Found at i:253477 original size:51 final size:53
Alignment explanation
Indices: 253381--253499 Score: 145
Period size: 51 Copynumber: 2.3 Consensus size: 53
253371 AACGGGGTTG
* * *
253381 GAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTA
1 GAGTATCCCCGATTATGAAGAAATTAGTG-TTTTTGAAAATAAAATCGGAGTTA
*
253435 GAGTATCCCCGATTAT--AGAAAATTAGTG-TTTTGAAAATAAAATCGGAGTTG
1 GAGTATCCCCGATTATGAAG-AAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
* *
253486 GAATATCCTCGATT
1 GAGTATCCCCGATT
253500 GTGGAGAATC
Statistics
Matches: 58, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
51 33 0.57
52 2 0.03
53 8 0.14
54 15 0.26
ACGTcount: A:0.34, C:0.11, G:0.23, T:0.33
Consensus pattern (53 bp):
GAGTATCCCCGATTATGAAGAAATTAGTGTTTTTGAAAATAAAATCGGAGTTA
Found at i:255891 original size:13 final size:13
Alignment explanation
Indices: 255873--255898 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
255863 ACAAAGATCC
255873 ATGTATCGATACA
1 ATGTATCGATACA
255886 ATGTATCGATACA
1 ATGTATCGATACA
255899 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:255894 original size:33 final size:33
Alignment explanation
Indices: 255852--255918 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
255842 AAAATTTCCA
***
255852 AATGTATCGATACAAAGATCCATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
*
255885 AATGTATCGATACACAGAAAAATGTATCGATAC
1 AATGTATCGATACAAAGAAAAATGTATCGATAC
255918 A
1 A
255919 TTTCCTTGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (33 bp):
AATGTATCGATACAAAGAAAAATGTATCGATAC
Found at i:255962 original size:19 final size:18
Alignment explanation
Indices: 255938--256001 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 18
255928 CAGCAGCTAA
255938 TTATGTATCGATACAATAC
1 TTATGTATCGATACAA-AC
255957 TTATGTATCGATAC--A-
1 TTATGTATCGATACAAAC
255972 -T-TGTATCGATACAAAAC
1 TTATGTATCGATAC-AAAC
255989 TTATGTATCGATA
1 TTATGTATCGATA
256002 AAAATTGTTG
Statistics
Matches: 39, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.28
14 1 0.03
16 2 0.05
18 1 0.03
19 24 0.62
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (18 bp):
TTATGTATCGATACAAAC
Found at i:255978 original size:13 final size:13
Alignment explanation
Indices: 255960--255984 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
255950 ACAATACTTA
255960 TGTATCGATACAT
1 TGTATCGATACAT
255973 TGTATCGATACA
1 TGTATCGATACA
255985 AAACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:255982 original size:32 final size:32
Alignment explanation
Indices: 255941--256001 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
255931 CAGCTAATTA
*
255941 TGTATCGATACAATACTTATGTATCGATACAT
1 TGTATCGATACAAAACTTATGTATCGATACAT
255973 TGTATCGATACAAAACTTATGTATCGATA
1 TGTATCGATACAAAACTTATGTATCGATA
256002 AAAATTGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.36, C:0.15, G:0.13, T:0.36
Consensus pattern (32 bp):
TGTATCGATACAAAACTTATGTATCGATACAT
Found at i:256085 original size:21 final size:21
Alignment explanation
Indices: 256061--256117 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
256051 CATTTGTAGG
256061 ATGTATCGATACATTCCACAA
1 ATGTATCGATACATTCCACAA
*
256082 ATGTATCGATACATTCTACAA
1 ATGTATCGATACATTCCACAA
256103 ATGTATCGATACATT
1 ATGTATCGATACATT
256118 TGGATAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (21 bp):
ATGTATCGATACATTCCACAA
Found at i:256148 original size:14 final size:15
Alignment explanation
Indices: 256125--256158 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
256115 ATTTGGATAA
256125 TTTTTAAATT-TTTT
1 TTTTTAAATTATTTT
*
256139 TTTTTTAATTATTTT
1 TTTTTAAATTATTTT
256154 TTTTT
1 TTTTT
256159 CAAACACTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTTAAATTATTTT
Found at i:256975 original size:55 final size:54
Alignment explanation
Indices: 256891--257841 Score: 1045
Period size: 55 Copynumber: 17.0 Consensus size: 54
256881 ATAAAGTGTA
* * * *
256891 TCCTGCTCATTGAGGAGTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
256946 TCCTGCTTTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
257001 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
257056 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGGG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
257111 TCCTACTCTTTGGGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * *
257170 TCCCGCTCTTTGAGGACTGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAAGGTG
1 TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTT----G-AAAGGCG
* * * *
257229 TCCTGCTCTTTGGGGACTGGAAAATGCCACCAACTTGTGTGGGCTTCGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * *
257290 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
**
257345 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT--AAGTGTA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAG-GCG
* * * * *
257399 TCCTGCTCATTGAGGAGTAAAATGTGCCACCAACTCGTGTGGGCTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
257454 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
257509 TCCTGCTCTTTGAGGACTGGAACA-TGCCACCAACTTATGTGGGCTTTGAAAGGAGAAGGCG
1 TCCTGCTCTTTGAGGACT-GAA-AGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * * *
257570 TCCTGCTTTTTGAGGACTGGGAAGTGTCACTAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
*
257625 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTT-AAGAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * ** * *
257680 TCTTGCTCTTTGAGGACTAGGAAGTGCCATGAACTTGTGTGGGCTTTAAAAGGTG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
257735 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
257790 TCCTGCTCTTTGAGGAC-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGG
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGG
257842 AAAAGGCGTC
Statistics
Matches: 791, Mismatches: 72, Indels: 67
0.85 0.08 0.07
Matches are distributed among these distances:
53 7 0.01
54 110 0.14
55 456 0.58
56 20 0.03
57 1 0.00
58 1 0.00
59 77 0.10
60 30 0.04
61 88 0.11
62 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.29, T:0.28
Consensus pattern (54 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:257078 original size:27 final size:27
Alignment explanation
Indices: 256996--257078 Score: 62
Period size: 27 Copynumber: 3.0 Consensus size: 27
256986 GGGCTTTAAG
256996 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
* ** * * * *
257023 A-ATG-CCACCAACTTGTGTGGGCTTTGAA
1 AGGTGTCCTGC-TCTT-TGAGGAC-TGGAA
257051 AGGTGTCCTGCTCTTTGAGGACTGGAA
1 AGGTGTCCTGCTCTTTGAGGACTGGAA
257078 A
1 A
257079 ATGCCACCAA
Statistics
Matches: 37, Mismatches: 14, Indels: 10
0.61 0.23 0.16
Matches are distributed among these distances:
25 3 0.08
26 5 0.14
27 11 0.30
28 10 0.27
29 5 0.14
30 3 0.08
ACGTcount: A:0.22, C:0.19, G:0.30, T:0.29
Consensus pattern (27 bp):
AGGTGTCCTGCTCTTTGAGGACTGGAA
Found at i:264133 original size:79 final size:79
Alignment explanation
Indices: 263987--264169 Score: 197
Period size: 79 Copynumber: 2.3 Consensus size: 79
263977 TGTTCCCTTG
* ** * * *
263987 AAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGATTAGAAAAAAAAATCGGGATT
1 AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATTAGAAAAAAAAACCGGGATT
**
264052 GGAGTATCCTTTCA
66 GGAGTATCCCCTCA
* ** * * *
264066 AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAAT-ATTTTGGGAATAAAGCCGGGGT
1 AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGA-TTAGAAAAAAAAACCGGGAT
*
264130 TGGAGTATCCCCTCG
65 TGGAGTATCCCCTCA
* *
264145 GAAGTAACGGGGTTGGAGTATCCCC
1 AAAATAACGGGGTTGGAGTATCCCC
264170 GATGAAATAA
Statistics
Matches: 86, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
78 1 0.01
79 85 0.99
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (79 bp):
AAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATGATTAGAAAAAAAAACCGGGATT
GGAGTATCCCCTCA
Found at i:264164 original size:28 final size:28
Alignment explanation
Indices: 264124--264195 Score: 99
Period size: 28 Copynumber: 2.6 Consensus size: 28
264114 GGAATAAAGC
** *
264124 CGGGGTTGGAGTATCCCCTCGGAAGTAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
264152 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGAGGAAATAA
*
264180 CGAGGTTGGAGTATCC
1 CGGGGTTGGAGTATCC
264196 TCGATTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.24, C:0.19, G:0.35, T:0.22
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGAGGAAATAA
Found at i:264253 original size:52 final size:52
Alignment explanation
Indices: 264184--264353 Score: 177
Period size: 52 Copynumber: 3.3 Consensus size: 52
264174 AAATAACGAG
* *
264184 GTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGA
1 GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAACCGGA
** * ** *
264236 GTTGGAGTATCCCCGATTAAAGGAAAATTGG-CGTTTTGAAAATAAAACCAGGA
1 GTTGGAGTATCCCCGATT-GTGAAAAATTGGTATTTTTGGAAATAAAACC-GGA
* * *
264289 -TTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG--ATAAAACCGGA
1 GTTGGAGTATCCCCGATTGT-GAAAAATTGGTATTTTTG-GAAATAAAACCGGA
264340 GTTGGAGTATCCCC
1 GTTGGAGTATCCCC
264354 TCGGAAATAA
Statistics
Matches: 96, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
51 3 0.03
52 77 0.80
53 16 0.17
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.29
Consensus pattern (52 bp):
GTTGGAGTATCCCCGATTGTGAAAAATTGGTATTTTTGGAAATAAAACCGGA
Found at i:264380 original size:28 final size:27
Alignment explanation
Indices: 264340--264410 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
264330 TAAAACCGGA
**
264340 GTTGGAGTATCCCCTCGGAAATAACGGG
1 GTTGGAGTATCCCCGAGG-AATAACGGG
* *
264368 GTTGGAGTATCCCCGATGATTAACGGG
1 GTTGGAGTATCCCCGAGGAATAACGGG
264395 GTTGGAGTATCCCCGA
1 GTTGGAGTATCCCCGA
264411 TTGTGAAGAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.62
28 15 0.38
ACGTcount: A:0.23, C:0.21, G:0.32, T:0.24
Consensus pattern (27 bp):
GTTGGAGTATCCCCGAGGAATAACGGG
Found at i:264423 original size:107 final size:105
Alignment explanation
Indices: 264070--264460 Score: 321
Period size: 107 Copynumber: 3.7 Consensus size: 105
264060 CTTTCAAAAA
* * * * * * *
264070 TAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATATTTTGGGAATAAAGCCGGGGTTGGAG
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTT-GGAATAAAACCGGAGTTGGAG
* *
264135 TATCCCCTCGGAAGTAACGGGGTTGGAGTATCCCCGATGAAA
65 TATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATG-AT
* * * *
264177 TAACGAGGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATCGGAGTTGGA
1 TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTA-TTTTGG-AATAAAACCGGAGTTGGA
* * ** * ** **
264242 GTAT-CCC-C-G-ATTAAAGGAAAATTGGCGT-T--TTGAAAAT
64 GTATCCCCTCGGAAATAACGG--GGTTGGAGTATCCCCGATGAT
* * * *
264279 AAAACCAGGATTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGCG-ATAAAACCGGAGTT
1 -TAA-CGGGGTTGGAGTATCCCCGATTGT-GAAAAATTAGTATTTT-G-GAATAAAACCGGAGTT
264343 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
61 GGAGTATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
* * *
264388 TAACGGGGTTGGAGTATCCCCGATTGTGAAGAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTG
1 TAACGGGGTTGGAGTATCCCCGATTGTGAA-AAATT--AGTATTTTGG-AATAAAACCGGAGTTG
*
264453 GAATATCC
62 GAGTATCC
264461 TCGATTGTGG
Statistics
Matches: 218, Mismatches: 45, Indels: 40
0.72 0.15 0.13
Matches are distributed among these distances:
102 1 0.00
103 4 0.02
104 50 0.23
105 16 0.07
106 18 0.08
107 66 0.30
108 32 0.15
109 31 0.14
ACGTcount: A:0.30, C:0.14, G:0.28, T:0.28
Consensus pattern (105 bp):
TAACGGGGTTGGAGTATCCCCGATTGTGAAAAATTAGTATTTTGGAATAAAACCGGAGTTGGAGT
ATCCCCTCGGAAATAACGGGGTTGGAGTATCCCCGATGAT
Found at i:266860 original size:13 final size:13
Alignment explanation
Indices: 266842--266867 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
266832 ACAAAGATCC
266842 ATGTATCGATACA
1 ATGTATCGATACA
266855 ATGTATCGATACA
1 ATGTATCGATACA
266868 CAGAAAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Done.