Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold475
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1773841
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 5 of 12
Found at i:746775 original size:30 final size:31
Alignment explanation
Indices: 746741--746802 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
746731 CCTTACAACA
746741 CTATCTTTT-AAGGG-TAAGATAGAAACCTCT
1 CTATCTTTTCAAGGGCTAAGATAG-AACCTCT
*
746771 CTATCTTTTCACGGGCTAAGATAGAACCTCT
1 CTATCTTTTCAAGGGCTAAGATAGAACCTCT
746802 C
1 C
746803 AATCACTTAA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 9 0.31
31 12 0.41
32 8 0.28
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (31 bp):
CTATCTTTTCAAGGGCTAAGATAGAACCTCT
Found at i:753108 original size:21 final size:21
Alignment explanation
Indices: 753082--753138 Score: 96
Period size: 21 Copynumber: 2.7 Consensus size: 21
753072 TTATTATCCA
753082 AATGTATCGATACATTTGTAG
1 AATGTATCGATACATTTGTAG
*
753103 AATGTATCGATACATTTGTGG
1 AATGTATCGATACATTTGTAG
*
753124 AATGTACCGATACAT
1 AATGTATCGATACAT
753139 CCTACAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.35
Consensus pattern (21 bp):
AATGTATCGATACATTTGTAG
Found at i:753218 original size:19 final size:18
Alignment explanation
Indices: 753194--753292 Score: 92
Period size: 19 Copynumber: 5.9 Consensus size: 18
753184 AATTCAACAA
753194 TTTGTATCGATACATAGGT
1 TTTGTATCGATACATA-GT
753213 TTTGTATCGATACA-A--
1 TTTGTATCGATACATAGT
753228 --TGTATCGATACATAGGT
1 TTTGTATCGATACATA-GT
753245 TTTGTATCGATACA-A--
1 TTTGTATCGATACATAGT
753260 --TGTATCGATACATATGT
1 TTTGTATCGATACATA-GT
*
753277 ATTGTATCGATACATA
1 TTTGTATCGATACATA
753293 ATTAGCTACT
Statistics
Matches: 68, Mismatches: 0, Indels: 24
0.74 0.00 0.26
Matches are distributed among these distances:
13 24 0.35
14 2 0.03
18 2 0.03
19 40 0.59
ACGTcount: A:0.31, C:0.12, G:0.17, T:0.39
Consensus pattern (18 bp):
TTTGTATCGATACATAGT
Found at i:753233 original size:13 final size:14
Alignment explanation
Indices: 753215--753278 Score: 69
Period size: 13 Copynumber: 4.4 Consensus size: 14
753205 ACATAGGTTT
753215 TGTATCGATACA-A
1 TGTATCGATACATA
753228 TGTATCGATACATA
1 TGTATCGATACATA
753242 GGTTTTGTATCGATACA-A
1 -----TGTATCGATACATA
753260 TGTATCGATACATA
1 TGTATCGATACATA
753274 TGTAT
1 TGTAT
753279 TGTATCGATA
Statistics
Matches: 44, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
13 24 0.55
14 7 0.16
18 1 0.02
19 12 0.27
ACGTcount: A:0.33, C:0.12, G:0.17, T:0.38
Consensus pattern (14 bp):
TGTATCGATACATA
Found at i:753237 original size:32 final size:32
Alignment explanation
Indices: 753196--753290 Score: 172
Period size: 32 Copynumber: 3.0 Consensus size: 32
753186 TTCAACAATT
753196 TGTATCGATACATAGGTTTTGTATCGATACAA
1 TGTATCGATACATAGGTTTTGTATCGATACAA
753228 TGTATCGATACATAGGTTTTGTATCGATACAA
1 TGTATCGATACATAGGTTTTGTATCGATACAA
* *
753260 TGTATCGATACATATGTATTGTATCGATACA
1 TGTATCGATACATAGGTTTTGTATCGATACA
753291 TAATTAGCTA
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 61 1.00
ACGTcount: A:0.32, C:0.13, G:0.18, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAGGTTTTGTATCGATACAA
Found at i:753351 original size:13 final size:13
Alignment explanation
Indices: 753333--753358 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
753323 CATTTTTCTG
753333 TGTATCGATACAT
1 TGTATCGATACAT
753346 TGTATCGATACAT
1 TGTATCGATACAT
753359 GGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:753355 original size:33 final size:33
Alignment explanation
Indices: 753313--753379 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
753303 GCCAAGGAAA
***
753313 TGTATCGATACATTTTTCTGTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
*
753346 TGTATCGATACATGGATCTTTGTATCGATACAT
1 TGTATCGATACATGGATCTGTGTATCGATACAT
753379 T
1 T
753380 TGGAAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.25, C:0.15, G:0.16, T:0.43
Consensus pattern (33 bp):
TGTATCGATACATGGATCTGTGTATCGATACAT
Found at i:755888 original size:28 final size:27
Alignment explanation
Indices: 755822--755894 Score: 92
Period size: 27 Copynumber: 2.7 Consensus size: 27
755812 CTTCACAATC
* **
755822 GGGGATACTCCAATCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
755849 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
755877 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
755895 ATTTTATCGC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
27 20 0.50
28 20 0.50
ACGTcount: A:0.23, C:0.33, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:755941 original size:52 final size:51
Alignment explanation
Indices: 755877--756047 Score: 159
Period size: 52 Copynumber: 3.3 Consensus size: 51
755867 TTATTTCCGA
755877 GGGGATACTCCAACCCCGATTTTATCGCTAAAACACTAATTTTTCCACAATC
1 GGGGATACTCCAACCCCGATTTTATC-CTAAAACACTAATTTTTCCACAATC
* * ** * **
755929 GGGGATACTCCAATCCCGGTTTTATTTTCAAAAC-GTCAA-TTTTCCTTTAATC
1 GGGGATACTCCAACCCCGATTTTATCCT-AAAACACT-AATTTTTCC-ACAATC
* * * *
755981 GGGGATACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT-CACAATC
1 GGGGATACTCCAACCCCGATTTTA--TCCTAAAACACTAATTTTTCCACAATC
*
756033 GAGGATACTCCAACC
1 GGGGATACTCCAACC
756048 TCGTTATTTC
Statistics
Matches: 92, Mismatches: 20, Indels: 14
0.73 0.16 0.11
Matches are distributed among these distances:
51 8 0.09
52 72 0.78
53 7 0.08
54 5 0.05
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
GGGGATACTCCAACCCCGATTTTATCCTAAAACACTAATTTTTCCACAATC
Found at i:756030 original size:104 final size:103
Alignment explanation
Indices: 755711--756045 Score: 301
Period size: 104 Copynumber: 3.2 Consensus size: 103
755701 CTCAATTCTC
* * * *
755711 CACAATCGGGGATATTCCAA-CTCCGATTTTA-TTTCAAAACACTAATTTT-CTATAATCGGGGA
1 CACAATCGGGGATACTCCAATC-CCGGTTTTATTTTCAAAACTC-AATTTTCCTTTAATCGGGGA
*
755773 TACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTT
64 TACTCCAACTCCGATTTTATTTCC-AAAAACACCAATTT-TT
* ** * * ** * *
755815 CACAATCGGGGATACTCCAATCCC-G-TTAATCATCGGGGATACTCCAA--CCCCGTTATTTCCG
1 CACAATCGGGGATACTCCAATCCCGGTTTTATTTTC---AAAACT-CAATTTTCCTTTA-AT-C-
* * *
755876 AGGGGATACTCCAACCCCGATTTTA--TCGCTAAAACACTAATTTTT
59 -GGGGATACTCCAACTCCGATTTTATTTC-CAAAAACACCAATTTTT
755921 CCACAATCGGGGATACTCCAATCCCGGTTTTATTTTCAAAACGTCAATTTTCCTTTAATCGGGGA
1 -CACAATCGGGGATACTCCAATCCCGGTTTTATTTTCAAAAC-TCAATTTTCCTTTAATCGGGGA
*
755986 TACTCCAACTCCGATTTTATTTCCAAAAATACCAATTTTT
64 TACTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
*
756026 CACAATCGAGGATACTCCAA
1 CACAATCGGGGATACTCCAA
756046 CCTCGTTATT
Statistics
Matches: 180, Mismatches: 31, Indels: 40
0.72 0.12 0.16
Matches are distributed among these distances:
102 3 0.02
103 2 0.01
104 63 0.35
105 18 0.10
106 17 0.09
107 42 0.23
108 7 0.04
109 28 0.16
ACGTcount: A:0.30, C:0.26, G:0.13, T:0.31
Consensus pattern (103 bp):
CACAATCGGGGATACTCCAATCCCGGTTTTATTTTCAAAACTCAATTTTCCTTTAATCGGGGATA
CTCCAACTCCGATTTTATTTCCAAAAACACCAATTTTT
Found at i:756074 original size:213 final size:211
Alignment explanation
Indices: 755709--756102 Score: 600
Period size: 213 Copynumber: 1.9 Consensus size: 211
755699 TTCTCAATTC
*
755709 TCCACAATCGGGGATATTCCAACTCCGATTTTATTTCAAAACACTAATTTTCTATAATCGGGGAT
1 TCCACAATCGGGGATACTCCAACTCCGATTTTATTTCAAAACACTAATTTTCTATAATCGGGGAT
* *
755774 ACTCTAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGGGGATACTCCAATCCC
66 ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAATCCC
* *
755839 GTTAATCATCGGGGATACTCCAACCCCGTTATTTCCGAGGGGATACTCCAACCCCGATTTTATCG
131 GTTAATCATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAACCCCGATTTTATCG
755904 CTAAAACACTAATTTT
196 CTAAAACACTAATTTT
* * *
755920 TCCACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAAC-GTCAATTTTCCTTTAATCGG
1 TCCACAATCGGGGATACTCCAACT-CCGATTTTA-TTTCAAAACACT-AATTTT-CTATAATCGG
*
755983 GGATACTCCAACTCCGATTTTATTTCC-AAAAATACCAATTT-TTCACAATCGAGGATACTCCAA
62 GGATACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAA
*
756046 -CCTCGTTATTTCAATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAA
127 TCC-CGTTA-ATC-ATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAA
756103 TCTTGATTTT
Statistics
Matches: 166, Mismatches: 10, Indels: 12
0.88 0.05 0.06
Matches are distributed among these distances:
210 3 0.02
211 56 0.34
212 30 0.18
213 77 0.46
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (211 bp):
TCCACAATCGGGGATACTCCAACTCCGATTTTATTTCAAAACACTAATTTTCTATAATCGGGGAT
ACTCCAACTCCGATTTTATTTCCAAAAAACACCAATTTCTTCACAATCGAGGATACTCCAATCCC
GTTAATCATCGGGGATACTCCAACCCCATTACTTCCGAGGGGATACTCCAACCCCGATTTTATCG
CTAAAACACTAATTTT
Found at i:768414 original size:9 final size:8
Alignment explanation
Indices: 768400--768464 Score: 60
Period size: 9 Copynumber: 7.6 Consensus size: 8
768390 TCTTTTTCAA
768400 AAAAAACAC
1 AAAAAA-AC
768409 AAAAAAAC
1 AAAAAAAC
*
768417 AACAAAAAA
1 AA-AAAAAC
768426 AAACAAAAC
1 AAA-AAAAC
768435 AAACAAAAC
1 AAA-AAAAC
768444 AAACAAAA-
1 AAA-AAAAC
*
768452 AAAAAAAG
1 AAAAAAAC
768460 AAAAA
1 AAAAA
768465 TCTGCTTAAG
Statistics
Matches: 51, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
7 4 0.08
8 13 0.25
9 34 0.67
ACGTcount: A:0.85, C:0.14, G:0.02, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:768414 original size:10 final size:10
Alignment explanation
Indices: 768399--768455 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
768389 TTCTTTTTCA
768399 AAAAAAACAC
1 AAAAAAACAC
768409 AAAAAAACAAC
1 AAAAAAAC-AC
*
768420 AAAAAAAAAC
1 AAAAAAACAC
768430 AAAACAAACA-
1 AAAA-AAACAC
*
768440 AAACAAACA-
1 AAAAAAACAC
768449 AAAAAAA
1 AAAAAAA
768456 AAAGAAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
9 11 0.27
10 17 0.41
11 13 0.32
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAACAC
Found at i:768420 original size:13 final size:13
Alignment explanation
Indices: 768398--768454 Score: 73
Period size: 13 Copynumber: 4.5 Consensus size: 13
768388 ATTCTTTTTC
768398 AAAAAA-AACACA
1 AAAAAACAACACA
*
768410 AAAAAACAACAAA
1 AAAAAACAACACA
*
768423 AAAAAACAAAACA
1 AAAAAACAACACA
768436 AACAAAACAA-ACA
1 AA-AAAACAACACA
768449 AAAAAA
1 AAAAAA
768455 AAAAGAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
12 10 0.25
13 23 0.57
14 7 0.17
ACGTcount: A:0.84, C:0.16, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAACAACACA
Found at i:768435 original size:28 final size:27
Alignment explanation
Indices: 768398--768458 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 27
768388 ATTCTTTTTC
768398 AAAAAAAACACAAAAAAAC-AACAAAAA
1 AAAAAAAACA-AAAAAAACAAACAAAAA
*
768425 AAAACAAAACAAACAAAACAAACAAAAA
1 AAAA-AAAACAAAAAAAACAAACAAAAA
768453 AAAAAA
1 AAAAAA
768459 GAAAAATCTG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
27 13 0.42
28 18 0.58
ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00
Consensus pattern (27 bp):
AAAAAAAACAAAAAAAACAAACAAAAA
Found at i:768455 original size:13 final size:13
Alignment explanation
Indices: 768398--768464 Score: 68
Period size: 13 Copynumber: 5.2 Consensus size: 13
768388 ATTCTTTTTC
768398 AAAAA-AAACACAA
1 AAAAACAAACA-AA
768411 AAAAAC-AACAAAA
1 AAAAACAAAC-AAA
768424 AAAAACAAAACAAA
1 AAAAAC-AAACAAA
*
768438 CAAAACAAACAAA
1 AAAAACAAACAAA
*
768451 AAAAA-AAAGAAA
1 AAAAACAAACAAA
768463 AA
1 AA
768465 TCTGCTTAAG
Statistics
Matches: 47, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
12 8 0.17
13 27 0.57
14 9 0.19
15 3 0.06
ACGTcount: A:0.85, C:0.13, G:0.01, T:0.00
Consensus pattern (13 bp):
AAAAACAAACAAA
Found at i:768464 original size:10 final size:10
Alignment explanation
Indices: 768397--768456 Score: 70
Period size: 9 Copynumber: 6.0 Consensus size: 10
768387 CATTCTTTTT
768397 CAAAAAAAACA
1 CAAAAAAAA-A
768408 CAAAAAAACAA
1 CAAAAAAA-AA
768419 CAAAAAAAAA
1 CAAAAAAAAA
*
768429 C-AAAACAAA
1 CAAAAAAAAA
*
768438 C-AAAACAAA
1 CAAAAAAAAA
768447 CAAAAAAAAA
1 CAAAAAAAAA
768457 AAGAAAAATC
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
9 17 0.38
10 10 0.22
11 17 0.38
12 1 0.02
ACGTcount: A:0.83, C:0.17, G:0.00, T:0.00
Consensus pattern (10 bp):
CAAAAAAAAA
Found at i:769517 original size:55 final size:55
Alignment explanation
Indices: 769432--770128 Score: 800
Period size: 55 Copynumber: 12.3 Consensus size: 55
769422 TCTGCTTTTT
*
769432 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
*
769487 AGTCCTCAGAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
769542 AGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
769596 TAGTCCTCAGAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGGCACC-TTC
1 -AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
769651 AGTCCTCAAAGAGCGGGACACATTTTCTTTTAAAGCCCACACAAGTTGGTGGCACC-TTC
1 AGTCCTCAAAGAGCAGGACAC-----CTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
769710 AGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCCCACCCAAGTTGGTGGCACCTTT-
1 AGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCCCACACAAGTTGGTGGCACCTTTC
* *
769769 AGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
*
769830 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT-C
* * * **
769885 AGTCCTGAAAGAGCAGGACACCTTTTAAAGCCCACACAGGTTGGTGGCATTTTTC
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
769940 AGTCTTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAGGTTGGTGGCACCTTTC
1 AGTCCTCAAAGAGCAGGA--C----ACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* *
770001 AGTCCCCAAAGAGCAGGACACCTCTT-AAAGCCCACACAAGTTGGTGACACCTTTC
1 AGTCCTCAAAGAGCAGGACACCT-TTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * * *
770056 AGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTTGGTGGCACTTTTT
1 AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
* * *
770111 ACTCCTCAATGAGAAGGA
1 AGTCCTCAAAGAGCAGGA
770129 TACACTTTAT
Statistics
Matches: 562, Mismatches: 45, Indels: 70
0.83 0.07 0.10
Matches are distributed among these distances:
54 31 0.06
55 322 0.57
56 13 0.02
57 1 0.00
58 2 0.00
59 93 0.17
60 29 0.05
61 66 0.12
64 4 0.01
65 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTTGGTGGCACCTTTC
Found at i:769971 original size:171 final size:171
Alignment explanation
Indices: 769454--770129 Score: 876
Period size: 171 Copynumber: 3.9 Consensus size: 171
769444 GCAGGACACC
* *
769454 TTTCAAAGCCCACACAAGTTGGTGGCA-TTTTCCAGTCCTCAGAGAGCAGGACACCTCTTAAAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTCTTAAAGC
*
769518 CCACACAAGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGT
65 CCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGT
* **
769583 TGGTGGCA-TTTTCTAGTCCTCAGAGAGCAGGA--C---ACCT
130 TGGTGGCATTTTTC-AGTCCTCAAAGAGCAGGATGCTTTTTCT
* * *
769620 CTT-AAAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGACACATTTTCTTTTA
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACAC-----CTCTTA
* *
769683 AAGCCCACACAAGTTGGTGGCACC-TTCAGTCCTCAAAGAGCGGGACGCCTTTTCTTTTAAAGCC
61 AAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACC-TTTC----AAAGCC
* **
769747 CACCCAAGTTGGTGGCACCTTT-AGTCCTCAAAGAGCAGGATGCTTTTTCT
121 CACACAAGTTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
769797 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCT-TTCAAAGC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTCTT-AAAGC
* * * *
769861 CCACACAAGTTGGTGGCA-TTTTCCAGTCCTGAAAGAGCAGGACACCTTTTAAAGCCCACACAGG
65 CCACACAAGTTGGTGGCACCTTT-CAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAG
*
769925 TTGGTGGCATTTTTCAGTCTTCAAAGAGCAGGATGCTTTTTCT
129 TTGGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
* *
769968 TTTCAAAGCCCACACAGGTTGGTGGCACCTTTCAGTCCCCAAAGAGCAGGACACCTCTTAAAGCC
1 TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCC
* * *
770033 CACACAAGTTGGTGACACCTTTCAGTCCTCAAAGAGCAGGACGCCTTTCAAAGCCCACACGAGTT
66 CACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTT
* * *
770098 GGTGGCACTTTTT-ACTCCTCAATGAGAAGGAT
131 GGTGGCA-TTTTTCAGTCCTCAAAGAGCAGGAT
770130 ACACTTTATT
Statistics
Matches: 446, Mismatches: 38, Indels: 47
0.84 0.07 0.09
Matches are distributed among these distances:
164 20 0.04
165 25 0.06
166 2 0.00
168 22 0.05
169 33 0.07
170 24 0.05
171 163 0.37
172 27 0.06
173 24 0.05
174 34 0.08
175 20 0.04
177 4 0.01
178 25 0.06
179 23 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (171 bp):
TTTCAAAGCCCACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTCTTAAAGCC
CACACAAGTTGGTGGCACCTTTCAGTCCTCAAAGAGCAGGACACCTTTCAAAGCCCACACAAGTT
GGTGGCATTTTTCAGTCCTCAAAGAGCAGGATGCTTTTTCT
Found at i:771885 original size:53 final size:51
Alignment explanation
Indices: 771762--772104 Score: 206
Period size: 52 Copynumber: 6.5 Consensus size: 51
771752 TGAGTTTCTC
* * *
771762 AATTCTCCACAATCGGGGATATTCCAACTCCGATTTTATTTTCAAAACACT
1 AATTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
* *
771813 AATT-TTCTATAATCGGGGATACTCTAACTCCGATTTTATTTCCAAAAAACAC-
1 AATTCTTC-ACAATCGGGGATACTCCAACTCCGATTTTATTTCC--AAAACACT
* * * *
771865 AATTTCTTCACAATCGGGGATACTCCAACCCCG-TTAATCATCGGGGATACTCC-AACCCCGT
1 AA-TTCTTCACAATCGGGGATACTCCAACTCCGATT--T--T-----AT-TTCCAAAACAC-T
* * ** *
771926 TA-T-TTC-CGA--GGGGATACTCCAACTCCGATTTTATCGCTAAAACACT
1 AATTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
* * * * *
771972 AATTTTTCCACAATCGGGGATACTCCAA-TCCCGGTTTTATTTTCAAAACGCC
1 AATTCTT-CACAATCGGGGATACTCCAACT-CCGATTTTATTTCCAAAACACT
* *
772024 AATT-TTC-CTTTAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAAATACC
1 AATTCTTCAC---AATCGGGGATACTCCAACTCCGATTTTATTTCC-AAAACACT
* *
772077 AATTTTTCACAATCGAGGATACTCCAAC
1 AATTCTTCACAATCGGGGATACTCCAAC
772105 CTCGTTATTT
Statistics
Matches: 227, Mismatches: 32, Indels: 65
0.70 0.10 0.20
Matches are distributed among these distances:
46 4 0.02
47 7 0.03
48 2 0.01
49 2 0.01
50 5 0.02
51 38 0.17
52 83 0.37
53 41 0.18
54 8 0.04
55 18 0.08
56 3 0.01
57 2 0.01
58 3 0.01
59 5 0.02
61 3 0.01
62 3 0.01
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.31
Consensus pattern (51 bp):
AATTCTTCACAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACACT
Found at i:771947 original size:28 final size:27
Alignment explanation
Indices: 771880--771948 Score: 93
Period size: 27 Copynumber: 2.5 Consensus size: 27
771870 CTTCACAATC
**
771880 GGGGATACTCCAACCCCGTTAATCATC
1 GGGGATACTCCAACCCCGTTAATCAGA
* *
771907 GGGGATACTCCAACCCCGTTATTTCCGA
1 GGGGATACTCCAACCCCGTTA-ATCAGA
771935 GGGGATACTCCAAC
1 GGGGATACTCCAAC
771949 TCCGATTTTA
Statistics
Matches: 37, Mismatches: 4, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
27 21 0.57
28 16 0.43
ACGTcount: A:0.25, C:0.32, G:0.22, T:0.22
Consensus pattern (27 bp):
GGGGATACTCCAACCCCGTTAATCAGA
Found at i:772160 original size:28 final size:28
Alignment explanation
Indices: 772093--772165 Score: 85
Period size: 29 Copynumber: 2.6 Consensus size: 28
772083 TCACAATCGA
* *
772093 GGATACTCCAACCTCGTTATTTCAATCGG
1 GGATACTCCAACCCCGTTATTCCAA-CGG
*
772122 GGATACTCCAACCCCGTTACTTCCGA-GG
1 GGATACTCCAACCCCGTTA-TTCCAACGG
*
772150 GGATACTCCAATCCCG
1 GGATACTCCAACCCCG
772166 ATTTTTTTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
28 17 0.44
29 18 0.46
30 4 0.10
ACGTcount: A:0.23, C:0.33, G:0.19, T:0.25
Consensus pattern (28 bp):
GGATACTCCAACCCCGTTATTCCAACGG
Found at i:773941 original size:142 final size:141
Alignment explanation
Indices: 773761--774070 Score: 392
Period size: 142 Copynumber: 2.2 Consensus size: 141
773751 TGTAAATTTC
* * *
773761 AAAAATCTAATTTCGTACCTTAATAGAGAACCGAAAAGATACGAAAAATTTTGAA-ATTTTCTAT
1 AAAAAT-TTATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAATTTTGAAGA-TTTCGAT
* * * * * *
773825 ACCCATATGGAGAACCATAGGAATA-TAGAGATCTTGAAAAATTATGATAATAATTTTTAATTGC
64 A-CCATACGGAAAACCATAGGAATATTAGAAATCTTGAAAAATCAAGATAAAAATTTTTAATTG-
* *
773889 TTTTTTTAATTTCTA-
127 ATTTTTAAATTT-TAG
* * *
773904 AAAAATTTATTTCGTACATTAATGGAGAGCCGAAAAGATACGAAAAGTTTTGAAGATTTCGATAC
1 AAAAATTTATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAATTTTGAAGATTTCGATAC
* *
773969 CTTACGGAAAACCATAGGAATATTAGAAATCTTGAAAAATCAAGATAAAAATTTTTATTTGATTT
66 CATACGGAAAACCATAGGAATATTAGAAATCTTGAAAAATCAAGATAAAAATTTTTAATTGATTT
774034 TTAAATTTTAG
131 TTAAATTTTAG
* *
774045 GAAAATTTATTTTGTACCTTAATGGA
1 AAAAATTTATTTCGTACCTTAATGGA
774071 AAACTAGAAA
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
140 2 0.01
141 53 0.37
142 83 0.57
143 7 0.05
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (141 bp):
AAAAATTTATTTCGTACCTTAATGGAGAACCGAAAAGATACGAAAAATTTTGAAGATTTCGATAC
CATACGGAAAACCATAGGAATATTAGAAATCTTGAAAAATCAAGATAAAAATTTTTAATTGATTT
TTAAATTTTAG
Found at i:774091 original size:141 final size:140
Alignment explanation
Indices: 773753--774140 Score: 376
Period size: 142 Copynumber: 2.7 Consensus size: 140
773743 AAAAAAGTTG
* * * * *
773753 TAAATTTC--AAAAATCTAATTTCGTACCTTAATAGAGAACCGAAAAGATACGAAAAA-TTTTGA
1 TAAATTTCTAAAAAAT-TTATTTCGTACATTAATGGAAAACAGAAAAGATAC-AAAAAGTTTTGA
* * * * * * *
773815 AATTTTCTATACCCATATGGAGAACCATAGGAATATAGAGATCTTGAAAAATTATGATAATAATT
64 AA-TTTCTATA-CCTTACGGAAAACCATAGGAATATAGAAATCTTGAAAAATCAAGATAAAAATT
*
773880 TTTAATTGCTTTTT
127 TTTAATTGCATTTT
* * * * *
773894 TTAATTTCTAAAAAATTTATTTCGTACATTAATGGAGAGCCGAAAAGATACGAAAAGTTTTGAAG
1 TAAATTTCTAAAAAATTTATTTCGTACATTAATGGAAAACAGAAAAGATACAAAAAGTTTTGAA-
*
773959 ATTTCGATACCTTACGGAAAACCATAGGAATATTAGAAATCTTGAAAAATCAAGATAAAAATTTT
65 ATTTCTATACCTTACGGAAAACCATAGGAATA-TAGAAATCTTGAAAAATCAAGATAAAAATTTT
*
774024 TATTTG-ATTTT
129 TAATTGCATTTT
* * * **
774035 TAAATTT-TAGGAAAATTTATTTTGTACCTTAATGGAAAACTAG-AAAGATACAAAAAGTTTCAA
1 TAAATTTCTA-AAAAATTTATTTCGTACATTAATGGAAAAC-AGAAAAGATACAAAAAGTTT-TG
* *
774098 AAATTTCTATACCTCTAC-AAATAATCATAGGAATAATAGAAAT
63 AAATTTCTATACCT-TACGGAA-AACCATAGGAAT-ATAGAAAT
774141 ATATAAAAAT
Statistics
Matches: 207, Mismatches: 29, Indels: 21
0.81 0.11 0.08
Matches are distributed among these distances:
140 2 0.01
141 95 0.46
142 102 0.49
143 8 0.04
ACGTcount: A:0.43, C:0.11, G:0.12, T:0.34
Consensus pattern (140 bp):
TAAATTTCTAAAAAATTTATTTCGTACATTAATGGAAAACAGAAAAGATACAAAAAGTTTTGAAA
TTTCTATACCTTACGGAAAACCATAGGAATATAGAAATCTTGAAAAATCAAGATAAAAATTTTTA
ATTGCATTTT
Found at i:775080 original size:18 final size:18
Alignment explanation
Indices: 775057--775091 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
775047 TAGCTTGTTT
775057 TTTTTTTTCTATTTTCTC
1 TTTTTTTTCTATTTTCTC
*
775075 TTTTTTTTCTTTTTTCT
1 TTTTTTTTCTATTTTCT
775092 TTCTCTCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTTCTATTTTCTC
Found at i:775860 original size:165 final size:161
Alignment explanation
Indices: 775583--776135 Score: 599
Period size: 165 Copynumber: 3.4 Consensus size: 161
775573 TTTGAAGGAA
* *
775583 AAAAATGAAAAACTCATGAAAATAAATGAATTCTTCAAAACTGATTTAATATGAATT--ATGA-T
1 AAAAATGAAAAACTCATGAAAATAAATAAATTTTTCAAAACTGATTTAATATGAATTAAATGATT
775645 ATTTGATGAATTTTAAAAATTATAAACCACA-AAAAATCCCCCCAAAAACATTTACGAAGTAAAA
66 ATTTGATGAA-TTTAAAAATTATAAACCA-AGAAAAATCCCCCC-AAAACATTTACGAAGTAAAA
*
775709 AACTCCGTATTTCGAAAACAAAAGAATTTTAAAG
128 AACTCCGTATTTCGAAAATAAAAGAATTTTAAAG
* * *
775743 AAAAATGAAAAACTTATGAAAATAAATAAATTTTTCAAAACTGATTTACTATGAGTTAAATGATG
1 AAAAATGAAAAACTCATGAAAATAAATAAATTTTTCAAAACTGATTTAATATGAATTAAATGA--
775808 TTATTTGATGAATATTAAAAATTATAAACCAAGAAAAATCCCCACCAAAACATTTACGAAGTAAA
64 TTATTTGATGAAT-TTAAAAATTATAAACCAAGAAAAATCCCC-CCAAAACATTTACGAAGTAAA
* * * * * *
775873 AAACTTCGTCTTTTGAAAATAGGAA-AATTTCAAGG
127 AAACTCCGTATTTCGAAAATA-AAAGAATTTTAAAG
* * *
775908 AAAAAATGAAAAACTCATGAAAATAAATAAATTTTTCAAAACTGATTTAATGTAAATCAAATGAT
1 -AAAAATGAAAAACTCATGAAAATAAATAAATTTTTCAAAACTGATTTAATATGAATTAAATGAT
* * * * * * * *
775973 AATATTTGATGAATTTCAAAAATTTTAAATCGATG-AAAATCCTCCTAAAAAAATTACGGAG-AA
65 --TATTTGATGAATTT-AAAAATTATAAA-CCAAGAAAAATCCCCCCAAAACATTTACGAAGTAA
* *
776036 GAAAACTCTGTATTTCGAAAATAAAAGGAATTCTAAA-
126 -AAAACTCCGTATTTCGAAAATAAAA-GAATTTTAAAG
* * * *
776073 AGAAAATCAATAACTCAT-AAAATAAA-ACAA-ATTTCAAAACTGATTTAATGGTG-ATTAAATG
1 A-AAAATGAAAAACTCATGAAAATAAATA-AATTTTTCAAAACTGATTTAAT-ATGAATTAAATG
776134 AT
63 AT
776136 AATATTTAAA
Statistics
Matches: 334, Mismatches: 39, Indels: 37
0.81 0.10 0.09
Matches are distributed among these distances:
160 52 0.16
162 4 0.01
163 28 0.08
164 20 0.06
165 129 0.39
166 98 0.29
167 3 0.01
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.29
Consensus pattern (161 bp):
AAAAATGAAAAACTCATGAAAATAAATAAATTTTTCAAAACTGATTTAATATGAATTAAATGATT
ATTTGATGAATTTAAAAATTATAAACCAAGAAAAATCCCCCCAAAACATTTACGAAGTAAAAAAC
TCCGTATTTCGAAAATAAAAGAATTTTAAAG
Found at i:781730 original size:31 final size:32
Alignment explanation
Indices: 781665--781742 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 32
781655 ATTTAACTGG
*
781665 ATGTATCGATACATTTAGGGTAAAAACCTAGA
1 ATGTATCGATACAATTAGGGTAAAAACCTAGA
* *
781697 ATGTATCGATACAATT-GGGTCAAAATCTAGA
1 ATGTATCGATACAATTAGGGTAAAAACCTAGA
*
781728 ATGTATCAATACAAT
1 ATGTATCGATACAAT
781743 GAAAAATGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
31 27 0.64
32 15 0.36
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.29
Consensus pattern (32 bp):
ATGTATCGATACAATTAGGGTAAAAACCTAGA
Found at i:781842 original size:20 final size:20
Alignment explanation
Indices: 781819--781872 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 20
781809 CATTTCAGGC
*
781819 ATGTATTGATGCATT-CACTT
1 ATGTATTGATACATTAC-CTT
*
781839 ATGTATCGATACATTACCTT
1 ATGTATTGATACATTACCTT
*
781859 ATTGTATTAATACA
1 A-TGTATTGATACA
781873 AATTCCTAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.31, C:0.15, G:0.11, T:0.43
Consensus pattern (20 bp):
ATGTATTGATACATTACCTT
Found at i:781953 original size:70 final size:70
Alignment explanation
Indices: 781840--781992 Score: 306
Period size: 70 Copynumber: 2.2 Consensus size: 70
781830 CATTCACTTA
781840 TGTATCGATACATTACCTTATTGTATTAATACAAATTCCTAAATTTTGAAATTTTTTATCATTGG
1 TGTATCGATACATTACCTTATTGTATTAATACAAATTCCTAAATTTTGAAATTTTTTATCATTGG
781905 GACCT
66 GACCT
781910 TGTATCGATACATTACCTTATTGTATTAATACAAATTCCTAAATTTTGAAATTTTTTATCATTGG
1 TGTATCGATACATTACCTTATTGTATTAATACAAATTCCTAAATTTTGAAATTTTTTATCATTGG
781975 GACCT
66 GACCT
781980 TGTATCGATACAT
1 TGTATCGATACAT
781993 GCAAGCAAAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 83 1.00
ACGTcount: A:0.31, C:0.14, G:0.10, T:0.44
Consensus pattern (70 bp):
TGTATCGATACATTACCTTATTGTATTAATACAAATTCCTAAATTTTGAAATTTTTTATCATTGG
GACCT
Found at i:782540 original size:61 final size:61
Alignment explanation
Indices: 782452--782769 Score: 181
Period size: 61 Copynumber: 5.5 Consensus size: 61
782442 CTAGTGTGTA
* * * * *
782452 GATTTAAGGCCTACAACACTGGACTTAAAAATGATAAGGATGAAAAGAATGCCAATGTACT
1 GATTCAAGGCCAACGACATTGGACTTAAAAATGATAAGGATGAAAAGAATGCCAATGTGCT
* * ** * * * *
782513 GATTCAAGGCCAGCGACATTGGACTTAAATATGCGAAGAATGATAAAG-GTGCCAATATGTT
1 GATTCAAGGCCAACGACATTGGACTTAAAAATGATAAGGATGA-AAAGAATGCCAATGTGCT
* * * * * *
782574 GATTCAAGGCCAATGACATTGGGCTT-AAAA--AT----ACG--AAGAATACTAATGTGGT
1 GATTCAAGGCCAACGACATTGGACTTAAAAATGATAAGGATGAAAAGAATGCCAATGTGCT
* * *
782626 GATTCAAGGCTAACAACATTGGGCTT-AAAA--AT---GAT--AAA-AATGCCAATGTGCT
1 GATTCAAGGCCAACGACATTGGACTTAAAAATGATAAGGATGAAAAGAATGCCAATGTGCT
* * * * * * *
782678 GATTCAAGGCCAATGATATTGGGCTTAAAAATGATAAAGG-TGATAAGAGTGCCAATCTACT
1 GATTCAAGGCCAACGACATTGGACTTAAAAATGAT-AAGGATGAAAAGAATGCCAATGTGCT
* * * *
782739 AATTCAAGGCCAGCAACATTGGACTTGAAAA
1 GATTCAAGGCCAACGACATTGGACTTAAAAA
782770 GGCATCAATG
Statistics
Matches: 196, Mismatches: 47, Indels: 28
0.72 0.17 0.10
Matches are distributed among these distances:
51 3 0.02
52 70 0.36
53 7 0.04
54 2 0.01
55 2 0.01
58 1 0.01
59 1 0.01
60 5 0.03
61 101 0.52
62 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.22, T:0.24
Consensus pattern (61 bp):
GATTCAAGGCCAACGACATTGGACTTAAAAATGATAAGGATGAAAAGAATGCCAATGTGCT
Found at i:782712 original size:52 final size:52
Alignment explanation
Indices: 782551--782715 Score: 197
Period size: 52 Copynumber: 3.2 Consensus size: 52
782541 ATATGCGAAG
** * *
782551 AATGATAAAGGTGCCAATATGTTGATTCAAGGCCAATGACATTGGGCTTAAA
1 AATGATAAAAATGCCAATGTGCTGATTCAAGGCCAATGACATTGGGCTTAAA
* * * * * * **
782603 AAT-ACGAAGAATACTAATGTGGTGATTCAAGGCTAACAACATTGGGCTTAAA
1 AATGA-TAAAAATGCCAATGTGCTGATTCAAGGCCAATGACATTGGGCTTAAA
*
782655 AATGATAAAAATGCCAATGTGCTGATTCAAGGCCAATGATATTGGGCTTAAA
1 AATGATAAAAATGCCAATGTGCTGATTCAAGGCCAATGACATTGGGCTTAAA
782707 AATGATAAA
1 AATGATAAA
782716 GGTGATAAGA
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
51 1 0.01
52 89 0.98
53 1 0.01
ACGTcount: A:0.40, C:0.13, G:0.21, T:0.26
Consensus pattern (52 bp):
AATGATAAAAATGCCAATGTGCTGATTCAAGGCCAATGACATTGGGCTTAAA
Found at i:782842 original size:32 final size:31
Alignment explanation
Indices: 782803--782880 Score: 93
Period size: 32 Copynumber: 2.5 Consensus size: 31
782793 CCAACGACAT
*
782803 TGGGTTTAGAAAAAGATGTCACCGACTTATG
1 TGGGTTTAGAAAAAGATGCCACCGACTTATG
** * *
782834 TGGCGTTTAGAAAGGGTTGCCACCGACTTGTG
1 TGG-GTTTAGAAAAAGATGCCACCGACTTATG
782866 TGGGCTTTAGAAAAA
1 TGGG-TTTAGAAAAA
782881 AGTTACCACC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
31 4 0.11
32 34 0.89
ACGTcount: A:0.28, C:0.14, G:0.29, T:0.28
Consensus pattern (31 bp):
TGGGTTTAGAAAAAGATGCCACCGACTTATG
Found at i:782951 original size:31 final size:31
Alignment explanation
Indices: 782822--783160 Score: 326
Period size: 31 Copynumber: 10.7 Consensus size: 31
782812 AAAAAGATGT
*
782822 CACCGACTTATGT-GGCGTTTAGAAAGGGTTGC
1 CACCGACTTGTGTGGGC-TTTAG-AAGGGTTGC
** *
782854 CACCGACTTGTGTGGGCTTTAGAAAAAAGTTAC
1 CACCGACTTGTGTGGGCTTTAG--AAGGGTTGC
* *
782887 CACCCACTTGTGTGGGC-TTAAAGAGAGGTTGC
1 CACCGACTTGTGTGGGCTTTAGA-AG-GGTTGC
* *
782919 CACCAACTTGTTTGGGCTTTAGAAGGGTTGC
1 CACCGACTTGTGTGGGCTTTAGAAGGGTTGC
*
782950 CACTGACTTGTGTGGGCTTTAGAAGGGTTGC
1 CACCGACTTGTGTGGGCTTTAGAAGGGTTGC
** * * *
782981 CACTAATTTTTGTGGGCTTT-GAAAAGGTTGC
1 CACCGACTTGTGTGGGCTTTAG-AAGGGTTGC
* *
783012 CACGGACTTGTGTGGGCTTTAGAGAAGGGTTAC
1 CACCGACTTGTGTGGGCTTT--AGAAGGGTTGC
*
783045 CACCGAC-TGATGTGGGCTTTAGAAGAGTTGC
1 CACCGACTTG-TGTGGGCTTTAGAAGGGTTGC
* * *
783076 CACCAACTTGTGTGGGCTTTAGAAGAGGCTAC
1 CACCGACTTGTGTGGGCTTTAGAAG-GGTTGC
** * *
783108 CATTGACTTGTGTAGGCTTTGAAAAGGGTTGC
1 CACCGACTTGTGTGGGCTTT-AGAAGGGTTGC
783140 CACCGACTTGTGTGGGCTTTA
1 CACCGACTTGTGTGGGCTTTA
783161 AAAAGGGATG
Statistics
Matches: 252, Mismatches: 42, Indels: 27
0.79 0.13 0.08
Matches are distributed among these distances:
30 2 0.01
31 107 0.42
32 85 0.34
33 57 0.23
34 1 0.00
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (31 bp):
CACCGACTTGTGTGGGCTTTAGAAGGGTTGC
Found at i:783075 original size:64 final size:63
Alignment explanation
Indices: 782822--783167 Score: 328
Period size: 64 Copynumber: 5.4 Consensus size: 63
782812 AAAAAGATGT
* *
782822 CACCGACTTATGT-GGCGTTT-AGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAAAGTT
1 CACCGACTTGTGTGGGC-TTTAAG-AAGGGTTGCCACCGACTTGTGTGGGCTTTAG--AAGAGTT
*
782885 AC
62 GC
* * * * *
782887 CACCCACTTGTGTGGGCTTAAAG-AGAGGTTGCCACCAACTTGTTTGGGCTTTAGAAGGGTTGC
1 CACCGACTTGTGTGGGCTTTAAGAAG-GGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGTTGC
* ** * * *
782950 CACTGACTTGTGTGGGCTTT-AGAAGGGTTGCCACTAATTTTTGTGGGCTTT-GAAAAGGTTGC
1 CACCGACTTGTGTGGGCTTTAAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGA-GTTGC
* *
783012 CACGGACTTGTGTGGGCTTTAGAGAAGGGTTACCACCGAC-TGATGTGGGCTTTAGAAGAGTTGC
1 CACCGACTTGTGTGGGCTTTA-AGAAGGGTTGCCACCGACTTG-TGTGGGCTTTAGAAGAGTTGC
* * * ** * * *
783076 CACCAACTTGTGTGGGCTTT-AGAAGAGGCTACCATTGACTTGTGTAGGCTTTGAAAAGGGTTGC
1 CACCGACTTGTGTGGGCTTTAAGAAG-GGTTGCCACCGACTTGTGTGGGCTTT-AGAAGAGTTGC
*
783140 CACCGACTTGTGTGGGCTTTAAAAAGGG
1 CACCGACTTGTGTGGGCTTTAAGAAGGG
783168 ATGTCATGGA
Statistics
Matches: 234, Mismatches: 34, Indels: 27
0.79 0.12 0.09
Matches are distributed among these distances:
61 3 0.01
62 53 0.23
63 45 0.19
64 81 0.35
65 47 0.20
66 5 0.02
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.29
Consensus pattern (63 bp):
CACCGACTTGTGTGGGCTTTAAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGTTGC
Found at i:783075 original size:95 final size:94
Alignment explanation
Indices: 782822--783160 Score: 373
Period size: 95 Copynumber: 3.6 Consensus size: 94
782812 AAAAAGATGT
* *
782822 CACCGACTTATGT-GGCGTTT-AGAAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAAAGTT
1 CACCGACTTGTGTGGGC-TTTGAG-AAGGGTTGCCACCGACTTGTGTGGGCTTTAG--AAGAGTT
* * *
782885 ACCACCCACTTGTGTGGGC-TTAAAGAGAGGTTGC
62 GCCACCAACTTGTGTGGGCTTTGAA-A-AGGTTGC
* * * *
782919 CACCAACTTGTTTGGGCTTT-AGAAGGGTTGCCACTGACTTGTGTGGGCTTTAGAAGGGTTGCCA
1 CACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGTTGCCA
* * *
782983 CTAATTTTTGTGGGCTTTGAAAAGGTTGC
66 CCAACTTGTGTGGGCTTTGAAAAGGTTGC
* *
783012 CACGGACTTGTGTGGGCTTTAGAGAAGGGTTACCACCGAC-TGATGTGGGCTTTAGAAGAGTTGC
1 CACCGACTTGTGTGGGCTTT-GAGAAGGGTTGCCACCGACTTG-TGTGGGCTTTAGAAGAGTTGC
* * *
783076 CACCAACTTGTGTGGGCTTTAGAAGAGGCTAC
64 CACCAACTTGTGTGGGCTTT-GAAAAGGTTGC
** * *
783108 CATTGACTTGTGTAGGCTTTGAAAAGGGTTGCCACCGACTTGTGTGGGCTTTA
1 CACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTA
783161 AAAAGGGATG
Statistics
Matches: 206, Mismatches: 29, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
93 24 0.12
94 22 0.11
95 85 0.41
96 57 0.28
97 15 0.07
98 3 0.01
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (94 bp):
CACCGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAGAGTTGCCA
CCAACTTGTGTGGGCTTTGAAAAGGTTGC
Found at i:783208 original size:29 final size:29
Alignment explanation
Indices: 783175--783534 Score: 256
Period size: 29 Copynumber: 12.5 Consensus size: 29
783165 GGGATGTCAT
*
783175 GGAGTTGTGGACTTTGTGAAA-GGTGTCAC
1 GGAGTTGTGGACTTT-TGAAAGGGTGCCAC
* ** *
783204 TGAGTCAT-GAATTTTGAAAAGGGTGCCAC
1 GGAGTTGTGGACTTTTG-AAAGGGTGCCAC
*
783233 GGAGTTGTGGA-TTTTAAAAGGGGTGCCAC
1 GGAGTTGTGGACTTTTGAAA-GGGTGCCAC
**
783262 TAAGTTGTGGAC-TTTGAAAGGGTGCCAC
1 GGAGTTGTGGACTTTTGAAAGGGTGCCAC
* * * *
783290 GGAGTTGTGGAC-CTTAAAAGGGGTGCTAT
1 GGAGTTGTGGACTTTTGAAA-GGGTGCCAC
* *
783319 AGAGTTGTGGAC-TTTAAAAGGAGTGCCAC
1 GGAGTTGTGGACTTTTGAAAGG-GTGCCAC
* * * * *
783348 TGAGTTGTAGACTTTAGAAAAAGGTACCAC
1 GGAGTTGTGGACTTTTG-AAAGGGTGCCAC
* * * *
783378 GAAGCTGTGGAC-TTTAAAAGGGTGCCCC
1 GGAGTTGTGGACTTTTGAAAGGGTGCCAC
** * *
783406 AAAGTTGTGGAC-TTTAAAAGAGATGCCAC
1 GGAGTTGTGGACTTTTGAAAG-GGTGCCAC
* *
783435 TGAGTTGTAGAC-TTTGAAAGGGTGCCAC
1 GGAGTTGTGGACTTTTGAAAGGGTGCCAC
** * *
783463 TAAGTTATGGAC-TTTGAAAGGGTACCAC
1 GGAGTTGTGGACTTTTGAAAGGGTGCCAC
* *
783491 AGAGTTGTGGAC-TTTAAAAGAGGTGCCAC
1 GGAGTTGTGGACTTTTGAAAG-GGTGCCAC
783520 GGAGTTGTGGACTTT
1 GGAGTTGTGGACTTT
783535 AAAAGAGGGA
Statistics
Matches: 263, Mismatches: 56, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
27 2 0.01
28 111 0.42
29 126 0.48
30 20 0.08
31 4 0.02
ACGTcount: A:0.28, C:0.13, G:0.31, T:0.27
Consensus pattern (29 bp):
GGAGTTGTGGACTTTTGAAAGGGTGCCAC
Found at i:783239 original size:58 final size:58
Alignment explanation
Indices: 783156--783539 Score: 215
Period size: 57 Copynumber: 6.7 Consensus size: 58
783146 CTTGTGTGGG
* * * * * *
783156 CTTTAAAAAGGGATGTCATGGAGTTGTGGACTTTGTGAAA-GGTGTCACTGAGTCATGAA
1 CTTTGAAAAGGG-TGCCACGGAGTTGTGGACTTT-TAAAAGGGTGCCACTAAGTCATGAA
* ** *
783215 TTTTGAAAAGGGTGCCACGGAGTTGTGGA-TTTTAAAAGGGGTGCCACTAAGTTGTGGA
1 CTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTTAAAA-GGGTGCCACTAAGTCATGAA
* * ** *
783273 CTTTG-AAAGGGTGCCACGGAGTTGTGGAC-CTTAAAAGGGGTGCTA-TAGAGTTGTGGA
1 CTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTTAAAA-GGGTGCCACTA-AGTCATGAA
* * * * * * * *
783330 CTTT-AAAAGGAGTGCCACTGAGTTGTAGACTTTAGAAAAAGGTACCACGAAG-CTGTGGA
1 CTTTGAAAAGG-GTGCCACGGAGTTGTGGACTTT-TAAAAGGGTGCCACTAAGTC-ATGAA
* ** * *
783389 CTTT-AAAAGGGTGCCCCAAAGTTGTGGAC-TTTAAAAGAGATGCCACTGAGT--TGTAGA
1 CTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTTAAAAG-GGTGCCACTAAGTCATG-A-A
** * * * ** *
783446 CTTTG-AAAGGGTGCCACTAAGTTATGGAC-TTTGAAAGGGTACCAC-AGAGTTGTGGA
1 CTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTTAAAAGGGTGCCACTA-AGTCATGAA
783502 CTTT-AAAAGAGGTGCCACGGAGTTGTGGAC-TTTAAAAG
1 CTTTGAAAAG-GGTGCCACGGAGTTGTGGACTTTTAAAAG
783540 AGGGAGTTAC
Statistics
Matches: 260, Mismatches: 45, Indels: 42
0.75 0.13 0.12
Matches are distributed among these distances:
55 2 0.01
56 28 0.11
57 125 0.48
58 67 0.26
59 33 0.13
60 5 0.02
ACGTcount: A:0.29, C:0.13, G:0.31, T:0.27
Consensus pattern (58 bp):
CTTTGAAAAGGGTGCCACGGAGTTGTGGACTTTTAAAAGGGTGCCACTAAGTCATGAA
Found at i:783295 original size:57 final size:57
Alignment explanation
Indices: 783220--783600 Score: 372
Period size: 57 Copynumber: 6.6 Consensus size: 57
783210 ATGAATTTTG
*
783220 AAAAGGGTGCCACGGAGTTGTGGATTTTAAAAGGGGTGCCACTAAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGCCACTAAGTTGTGGACTTT
* * *
783277 GAAAGGGTGCCACGGAGTTGTGGACCTTAAAAGGGGTGCTA-TAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGCCACTA-AGTTGTGGACTTT
* * ** * * *
783334 AAAAGGAGTGCCACTGAGTTGTAGACTTTAGAAAAAGGTACCACGAAGCTGTGGACTTT
1 AAAAGG-GTGCCACGGAGTTGTGGACTTTA-AAAGGGGTGCCACTAAGTTGTGGACTTT
* ** * * * *
783393 AAAAGGGTGCCCCAAAGTTGTGGACTTTAAAAGAGATGCCACTGAGTTGTAGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGCCACTAAGTTGTGGACTTT
* ** * * *
783450 GAAAGGGTGCCACTAAGTTATGGACTTTGAAA-GGGTACCAC-AGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGCCACTA-AGTTGTGGACTTT
* ** *
783506 AAAAGAGGTGCCACGGAGTTGTGGACTTTAAAAGAGGGAGTTACAAAGTTGTGGACTTTT
1 AAAAG-GGTGCCACGGAGTTGTGGACTTTAAAAG-GGGTGCCACTAAGTTGTGGAC-TTT
* * **
783566 AGAAGGGATGCCACTGAGTCATGGACTTTGAAAAG
1 AAAAGGG-TGCCACGGAGTTGTGGACTTT-AAAAG
783601 AGATGCTATA
Statistics
Matches: 264, Mismatches: 48, Indels: 20
0.80 0.14 0.06
Matches are distributed among these distances:
56 24 0.09
57 126 0.48
58 39 0.15
59 43 0.16
60 27 0.10
61 5 0.02
ACGTcount: A:0.30, C:0.13, G:0.31, T:0.26
Consensus pattern (57 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGGTGCCACTAAGTTGTGGACTTT
Found at i:783542 original size:29 final size:28
Alignment explanation
Indices: 783220--783539 Score: 334
Period size: 29 Copynumber: 11.2 Consensus size: 28
783210 ATGAATTTTG
*
783220 AAAAGGGTGCCACGGAGTTGTGGATTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
**
783248 AAAAGGGGTGCCACTAAGTTGTGGACTTT
1 AAAA-GGGTGCCACGGAGTTGTGGACTTT
* *
783277 GAAAGGGTGCCACGGAGTTGTGGACCTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
* **
783305 AAAAGGGGTGCTATAGAGTTGTGGACTTT
1 AAAA-GGGTGCCACGGAGTTGTGGACTTT
* *
783334 AAAAGGAGTGCCACTGAGTTGTAGACTTT
1 AAAAGG-GTGCCACGGAGTTGTGGACTTT
* * * *
783363 AGAAAAAGGTACCACGAAGCTGTGGACTTT
1 --AAAAGGGTGCCACGGAGTTGTGGACTTT
* **
783393 AAAAGGGTGCCCCAAAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
* * *
783421 AAAAGAGATGCCACTGAGTTGTAGACTTT
1 AAAAG-GGTGCCACGGAGTTGTGGACTTT
* ** *
783450 GAAAGGGTGCCACTAAGTTATGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
* * *
783478 GAAAGGGTACCACAGAGTTGTGGACTTT
1 AAAAGGGTGCCACGGAGTTGTGGACTTT
783506 AAAAGAGGTGCCACGGAGTTGTGGACTTT
1 AAAAG-GGTGCCACGGAGTTGTGGACTTT
783535 AAAAG
1 AAAAG
783540 AGGGAGTTAC
Statistics
Matches: 241, Mismatches: 44, Indels: 13
0.81 0.15 0.04
Matches are distributed among these distances:
28 105 0.44
29 114 0.47
30 17 0.07
31 5 0.02
ACGTcount: A:0.30, C:0.14, G:0.31, T:0.26
Consensus pattern (28 bp):
AAAAGGGTGCCACGGAGTTGTGGACTTT
Found at i:783591 original size:30 final size:30
Alignment explanation
Indices: 783163--783683 Score: 201
Period size: 29 Copynumber: 17.9 Consensus size: 30
783153 GGGCTTTAAA
* * *
783163 AAGGGATGTCA-TGGAGTTGTGGACTTTGTG
1 AAGGGATGCCACT-GAGTCGTGGACTTTGAG
* * * * * *
783193 AAAGG-TGTCACTGAGTCATGAATTTTGAA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * * *
783222 AAGGG-TGCCACGGAGTTGTGGA-TTTTAA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * *
783250 AAGGGGTGCCACTAAGTTGTGGACTTTGA-
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * * *
783279 AAGGG-TGCCACGGAGTTGTGGACCTT-AA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * *
783307 AAGGGGTGCTA-TAGAGTTGTGGACTTT-A-
1 AAGGGATGCCACT-GAGTCGTGGACTTTGAG
* * * *
783335 AAAGGAGTGCCACTGAGTTGTAGACTTTAGAA
1 AAGGGA-TGCCACTGAGTCGTGGACTTT-GAG
* * *
783367 AAAGG-TACCAC-GAAG-CTGTGGACTTT-AA
1 AAGGGATGCCACTG-AGTC-GTGGACTTTGAG
* ** * *
783395 AAGGG-TGCCCCAAAGTTGTGGACTTT-AA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * *
783423 AAGAGATGCCACTGAGTTGTAGACTTTGA-
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* **
783452 AAGGG-TGCCACTAAGTTATGGACTTTGA-
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * * *
783480 AAGGG-TACCACAGAGTTGTGGACTTT-AA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * * *
783508 AAGAGG-TGCCACGGAGTTGTGGACTTTAAA
1 AAG-GGATGCCACTGAGTCGTGGACTTTGAG
** ** * *
783538 AGAGGGA-GTTACAAAGTTGTGGACTTTTAG
1 A-AGGGATGCCACTGAGTCGTGGACTTTGAG
* *
783568 AAGGGATGCCACTGAGTCATGGACTTTGAA
1 AAGGGATGCCACTGAGTCGTGGACTTTGAG
* * *
783598 AAGAGATGCTA-TAGAGTCTTGGACTTTGAG
1 AAGGGATGCCACT-GAGTCGTGGACTTTGAG
** *
783628 AAGGGACACCACTGAGTCGTGGACTTCGAAG
1 AAGGGATGCCACTGAGTCGTGGACTTTG-AG
*
783659 AA-GGATGCCACTAAGTCGTGGACTT
1 AAGGGATGCCACTGAGTCGTGGACTT
783684 AAAAAAAAAG
Statistics
Matches: 388, Mismatches: 77, Indels: 52
0.75 0.15 0.10
Matches are distributed among these distances:
27 2 0.01
28 109 0.28
29 136 0.35
30 128 0.33
31 8 0.02
32 5 0.01
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (30 bp):
AAGGGATGCCACTGAGTCGTGGACTTTGAG
Found at i:783593 original size:60 final size:59
Alignment explanation
Indices: 783216--783653 Score: 244
Period size: 57 Copynumber: 7.5 Consensus size: 59
783206 AGTCATGAAT
* * ** * * *
783216 TTTGAAAAGGGTGCCACGGAGTTGTGGATTTTAAAAG-GGGTGCCACTA-AGTTGTGGAC
1 TTTGAGAAGGGTGCCACTGAGTCATGGACTTTAAAAGAGGGAGCTAC-AGAGTTGTGGAC
* ** * * *
783274 TTTGA-AAGGGTGCCACGGAGTTGTGGACCTTAAAAG-GGGTGCTATAGAGTTGTGGAC
1 TTTGAGAAGGGTGCCACTGAGTCATGGACTTTAAAAGAGGGAGCTACAGAGTTGTGGAC
* ** * * * * *
783331 TTT-AAAAGGAGTGCCACTGAGTTGTAGACTTTAGAAAAAGGTA-CCAC-GAAGCTGTGGAC
1 TTTGAGAAGG-GTGCCACTGAGTCATGGACTTTA-AAAGAGGGAGCTACAG-AGTTGTGGAC
* * ** ** * * *
783390 TTT-AAAAGGGTGCCCCAAAGTTGTGGACTTTAAAAGA--GATGCCACTGAGTTGTAGAC
1 TTTGAGAAGGGTGCCACTGAGTCATGGACTTTAAAAGAGGGA-GCTACAGAGTTGTGGAC
* * * * *
783447 TTTGA-AAGGGTGCCACTAAGTTATGGACTTTGAAAG-GGTA-CCACAGAGTTGTGGAC
1 TTTGAGAAGGGTGCCACTGAGTCATGGACTTTAAAAGAGGGAGCTACAGAGTTGTGGAC
* * ** * *
783503 TTT-AAAAGAGGTGCCACGGAGTTGTGGACTTTAAAAGAGGGAGTTACAAAGTTGTGGAC
1 TTTGAGAAG-GGTGCCACTGAGTCATGGACTTTAAAAGAGGGAGCTACAGAGTTGTGGAC
* *
783562 TTTTAGAAGGGATGCCACTGAGTCATGGACTTTGAAAAGA--GATGCTATAGAGTCT-TGGAC
1 TTTGAGAAGGG-TGCCACTGAGTCATGGACTTT-AAAAGAGGGA-GCTACAGAGT-TGTGGAC
** *
783622 TTTGAGAAGGGACACCACTGAGTCGTGGACTT
1 TTTGAGAAGGG-TGCCACTGAGTCATGGACTT
783654 CGAAGAAGGA
Statistics
Matches: 312, Mismatches: 47, Indels: 40
0.78 0.12 0.10
Matches are distributed among these distances:
55 2 0.01
56 22 0.07
57 123 0.39
58 51 0.16
59 43 0.14
60 64 0.21
61 7 0.02
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (59 bp):
TTTGAGAAGGGTGCCACTGAGTCATGGACTTTAAAAGAGGGAGCTACAGAGTTGTGGAC
Found at i:783666 original size:60 final size:60
Alignment explanation
Indices: 783551--783683 Score: 162
Period size: 60 Copynumber: 2.2 Consensus size: 60
783541 GGGAGTTACA
* * ** * *
783551 AAGTTGTGGACTTTTAGAAGGGATGCCACTGAGTCATGGACTTTGAAAAGAGATGCTA-T
1 AAGTCGTGGACTTTGAGAAGGGACACCACTGAGTCATGGACTTCGAAAAGAGATGCCACT
* *
783610 AGAGTCTTGGACTTTGAGAAGGGACACCACTGAGTCGTGGACTTCGAAGAAG-GATGCCACT
1 A-AGTCGTGGACTTTGAGAAGGGACACCACTGAGTCATGGACTTCGAA-AAGAGATGCCACT
783671 AAGTCGTGGACTT
1 AAGTCGTGGACTT
783684 AAAAAAAAAG
Statistics
Matches: 62, Mismatches: 9, Indels: 5
0.82 0.12 0.07
Matches are distributed among these distances:
59 1 0.02
60 56 0.90
61 5 0.08
ACGTcount: A:0.29, C:0.16, G:0.30, T:0.26
Consensus pattern (60 bp):
AAGTCGTGGACTTTGAGAAGGGACACCACTGAGTCATGGACTTCGAAAAGAGATGCCACT
Found at i:784782 original size:24 final size:24
Alignment explanation
Indices: 784745--784796 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 24
784735 TTTTGACACA
*
784745 AAAAAAATTAAAAATCAAAGAAATC
1 AAAAAAATTAAAAAT-AAAAAAATC
784770 AAAAAAATTAAAAATAAAAAAATC
1 AAAAAAATTAAAAATAAAAAAATC
784794 AAA
1 AAA
784797 TAATAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (24 bp):
AAAAAAATTAAAAATAAAAAAATC
Found at i:784801 original size:16 final size:15
Alignment explanation
Indices: 784754--784825 Score: 54
Period size: 17 Copynumber: 4.3 Consensus size: 15
784744 AAAAAAAATT
784754 AAAAATCAAAGAAATCAA
1 AAAAATC-AA-AAAT-AA
*
784772 AAAAATTAAAAATAA
1 AAAAATCAAAAATAA
784787 AAAAATCAAATAATAA
1 AAAAATCAAA-AATAA
* *
784803 TAATAATAATAAAATAA
1 -AAAAATCA-AAAATAA
784820 AGAAAA
1 A-AAAA
784826 AAATGATGAC
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
15 11 0.24
16 10 0.22
17 16 0.36
18 8 0.18
ACGTcount: A:0.75, C:0.04, G:0.03, T:0.18
Consensus pattern (15 bp):
AAAAATCAAAAATAA
Found at i:786440 original size:79 final size:78
Alignment explanation
Indices: 786309--786534 Score: 269
Period size: 79 Copynumber: 2.9 Consensus size: 78
786299 AAAACAAAAT
* *
786309 ACCAACTTTT-CACAATCAGGGATATTCCAACCCCGTTATTTTCGAGGAGATACTCCAACCCCAG
1 ACCAA-TTTTCCACAATCAGGGATACTCCAA-CCCGTTATTTTCGAGGGGATACTCCAACCCCAG
**
786373 TTTTACTTTTGA-AAC
64 TTTTA-TTTCCATAAC
* * *
786388 ACCAATTTTCCACCATCGGGGATACTCCAACCTCGATATTTTCGAGGGGATACTCCAACCCCAGT
1 ACCAATTTTCCACAATCAGGGATACTCCAACC-CGTTATTTTCGAGGGGATACTCCAACCCCAGT
786453 TTTATTTCCATAAC
65 TTTATTTCCATAAC
* * * * *
786467 ATCGATTTTCCAAAATCAGGGATACTCTAATCCCGTTA-TTTCTGAGGGGATACTCCAACCCCGG
1 ACCAATTTTCCACAATCAGGGATACTCCAA-CCCGTTATTTTC-GAGGGGATACTCCAACCCCAG
786531 TTTT
64 TTTT
786535 TTATTCCACA
Statistics
Matches: 127, Mismatches: 15, Indels: 10
0.84 0.10 0.07
Matches are distributed among these distances:
78 14 0.11
79 111 0.87
80 2 0.02
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.31
Consensus pattern (78 bp):
ACCAATTTTCCACAATCAGGGATACTCCAACCCGTTATTTTCGAGGGGATACTCCAACCCCAGTT
TTATTTCCATAAC
Found at i:792369 original size:31 final size:32
Alignment explanation
Indices: 792299--792379 Score: 103
Period size: 32 Copynumber: 2.6 Consensus size: 32
792289 GATACATTGA
* *
792299 AGAATGTATCGATACATTTGGGGTAAAAACCT
1 AGAATGTATCGATACAATTGAGGTAAAAACCT
* *
792331 AGAATGTATCGATATAATT-AGGTCAAAAGCC-
1 AGAATGTATCGATACAATTGAGGT-AAAAACCT
792362 AGAATGTATCGATACAAT
1 AGAATGTATCGATACAAT
792380 GAAAAATGTA
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
31 20 0.47
32 23 0.53
ACGTcount: A:0.41, C:0.12, G:0.20, T:0.27
Consensus pattern (32 bp):
AGAATGTATCGATACAATTGAGGTAAAAACCT
Found at i:792483 original size:20 final size:20
Alignment explanation
Indices: 792460--792513 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 20
792450 TATTTCAAGC
792460 ATGTATCAATACATT-CACTT
1 ATGTATCAATACATTAC-CTT
**
792480 ATGTATTGATACATTACCTT
1 ATGTATCAATACATTACCTT
792500 ATTGTATCAATACA
1 A-TGTATCAATACA
792514 AATTGCTGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
20 17 0.61
21 11 0.39
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.41
Consensus pattern (20 bp):
ATGTATCAATACATTACCTT
Found at i:793968 original size:20 final size:20
Alignment explanation
Indices: 793945--793992 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
793935 TTTTTCCTTA
793945 TTTTCTCTCATTTCTTT-TCT
1 TTTTCTCTC-TTTCTTTCTCT
*
793965 TTTTCCTTTCTTTCTTTCTCT
1 TTTT-CTCTCTTTCTTTCTCT
793986 TTTTCTC
1 TTTTCTC
793993 CCTATTTTCC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.02, C:0.27, G:0.00, T:0.71
Consensus pattern (20 bp):
TTTTCTCTCTTTCTTTCTCT
Found at i:794127 original size:20 final size:20
Alignment explanation
Indices: 794102--794146 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
794092 AAAATTTCAT
* * *
794102 TTTTTTTATTTTTCATGCCA
1 TTTTTTCATTTTTCAAGCAA
794122 TTTTTTCATTTTTCAAGCAA
1 TTTTTTCATTTTTCAAGCAA
794142 TTTTT
1 TTTTT
794147 GACAAGATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.18, C:0.13, G:0.04, T:0.64
Consensus pattern (20 bp):
TTTTTTCATTTTTCAAGCAA
Found at i:799421 original size:32 final size:29
Alignment explanation
Indices: 799383--800264 Score: 690
Period size: 32 Copynumber: 29.1 Consensus size: 29
799373 GGTTTAGAAG
799383 GGTTGCCACCGACTTGTGTAGGCTTTAGAGAA
1 GGTTGCCACCGACTTGTGT-GGCTTT-GA-AA
* *
799415 AGTTGCCACCGACTTGTGTGGGCTTTAAAA
1 GGTTGCCACCGACTTGTGT-GGCTTTGAAA
* * **
799445 GGATGCCACTGACTTGTG-GATTTTGAGAA
1 GGTTGCCACCGACTTGTGTGGCTTTGA-AA
* * *
799474 -GATGCCTCTGACTTGTG-GGCTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
* * **
799501 AGATGCCACCGACTTGTG-GATTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
* * *
799529 AGATGCCACTGACTTGTG-GGCTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
* *
799557 GGGTGCCACTGACTTGTG-GGCTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
* * *
799585 AGATGCCACTGACTTGTG-GGCTTTGAAATA
1 GGTTGCCACCGACTTGTGTGGCTTTG-AA-A
* *
799615 GGTTGCCACCAACTTATGTGGGCTTTGAAA
1 GGTTGCCACCGACTTGTGT-GGCTTTGAAA
* * *
799645 TGGGTTGCCATCAACTTTTGTGGGCTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
799677 TGAGTTGCCACCGACTTGTGTGGGCTTTGAAA
1 -G-GTTGCCACCGACTTGTGT-GGCTTTGAAA
* * **
799709 TGATGCCACTAACTTGTG-GGCTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
799737 TGGGTTGCCACCGACTTGTGTGGGCTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
*
799769 TGGGTTGCCACCAACTTGTGTGGGCTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
*
799801 TGGTTGCCACCAACTTGTGTGGCCTTTGAAA
1 -GGTTGCCACCGACTTGTGTGG-CTTTGAAA
*
799832 TGAGTTGTCACCGACTTGTGTGGGCTTTGAAA
1 -G-GTTGCCACCGACTTGTGT-GGCTTTGAAA
*
799864 TGGGTTGCCACCGACTTGTGTGGGGTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
* *
799896 TGGGTTGCCACCAACTTGTGTGGGCTTTCAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
*
799928 TGAGTTGCCACCGACTTGTGTGGGTTTGAAA
1 -G-GTTGCCACCGACTTGTGTGGCTTTGAAA
* * * *
799959 TGATGTCACTGACTTGTG-GGCTTTGAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
*
799987 TGGGTTGCCACCGACTTGTGTGGTCTTTCAAA
1 --GGTTGCCACCGACTTGTGTGG-CTTTGAAA
*
800019 TGAGTTGCCACCGACTTGTGTAGGCTTTCAAA
1 -G-GTTGCCACCGACTTGTGT-GGCTTTGAAA
* * * *
800051 TGATGCCACTGACTTGTG-GGCTTTAAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
800079 TGGGTTGCCACCGACTTGTGTGGGCTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
*
800111 TGGGTTGCCACCAACTTGTGTAGGCTTTGAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
* *
800143 TGGGTTGCCACCAACTTGTGTGGGCTTTCAAA
1 --GGTTGCCACCGACTTGTGT-GGCTTTGAAA
*
800175 TGAGTTGCCACTGACTTGTGTAGGCTTTGAAA
1 -G-GTTGCCACCGACTTGTGT-GGCTTTGAAA
* * *
800207 GGATGCCACTGACTTGTG-GGCTTTAAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
* * ** *
800235 TGATGCCACTAACTTGTG-GGCTTTAAAA
1 GGTTGCCACCGACTTGTGTGGCTTTGAAA
800263 GG
1 GG
800265 GTGCTCCACG
Statistics
Matches: 732, Mismatches: 89, Indels: 62
0.83 0.10 0.07
Matches are distributed among these distances:
27 2 0.00
28 188 0.26
29 18 0.02
30 122 0.17
31 47 0.06
32 350 0.48
33 5 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (29 bp):
GGTTGCCACCGACTTGTGTGGCTTTGAAA
Found at i:799506 original size:56 final size:56
Alignment explanation
Indices: 799413--799612 Score: 285
Period size: 56 Copynumber: 3.5 Consensus size: 56
799403 GGCTTTAGAG
* *
799413 AAAGTTGCCACCGACTTGTGTGGGCTTT-AAAAGGATGCCACTGACTTGTGGATTTTGA
1 AAAGATGCCACTGAC-T-TGTGGGCTTTGAAAA-GATGCCACTGACTTGTGGATTTTGA
* * *
799471 GAAGATGCCTCTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGATTTTGA
1 AAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGATTTTGA
* * **
799527 AAAGATGCCACTGACTTGTGGGCTTTGAAAGGGTGCCACTGACTTGTGGGCTTTGA
1 AAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGATTTTGA
799583 AAAGATGCCACTGACTTGTGGGCTTTGAAA
1 AAAGATGCCACTGACTTGTGGGCTTTGAAA
799613 TAGGTTGCCA
Statistics
Matches: 129, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
56 113 0.88
57 5 0.04
58 11 0.09
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (56 bp):
AAAGATGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGATTTTGA
Found at i:799540 original size:84 final size:85
Alignment explanation
Indices: 799386--800780 Score: 495
Period size: 84 Copynumber: 15.9 Consensus size: 85
799376 TTAGAAGGGT
* *
799386 TGCCACCGACTTGTGTAGGCTTTAGAGAAAGTTGCCACCGACTTGTGTGGGCTTT-AAAAGGATG
1 TGCCACTGACTTGTG--GGCTTT-GA-AAAGATGCCACCGAC-T-TGTGGGCTTTGAAAAGGATG
*
799450 CCACTGACTTGTGGATTTTGAGAA-GA
60 CCACTGACTTGTGGACTTTGA-AAGGA
* **
799476 TGCCTCTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGATTTTGAAAA-GATGCCACTG
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCACTG
* *
799540 ACTTGTGGGCTTTGAAAGGG
66 ACTTGTGGACTTTGAAAGGA
* * *
799560 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACTGACTTGTGGGCTTTGAAATAGGTTGCCACC
1 TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAA-AGGATGCCACT
* * *
799625 AACTTATGTGGGCTTTGAAATGGGT
65 GAC-T-TGTGGACTTTGAAA--GGA
* * *
799650 TGCCA-TCAACTTTTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTG-AAATGAT
1 TGCCACT-GAC--TTGTGGGCTTTGAAA--AGATGCCACCGAC-T-TGTGGGCTTTGAAAAGGAT
* * *
799713 GCCACTAACTTGTGGGCTTTGAAATGGGT
59 GCCACTGACTTGTGGACTTTGAAA--GGA
* * * * * *
799742 TGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATGGTTG
1 TGCCACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACCGAC-T-TGTGGGCTTTGAAAAGGATG
** * *
799807 CCACCAACTTGTGTGGCCTTTGAAATGAGT
60 CCACTGAC-T-TGTGGACTTTGAAA-G-GA
* * * * * * *
799837 TGTCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGGTTTGAAATGGGTT
1 TGCCACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACCGAC-T-TGTGGGCTTTGAAA-AGGAT
** * * *
799902 GCCACCAACTTGTGTGGGCTTTCAAATGAGT
59 GCCACTGAC-T-TGTGGACTTTGAAA-G-GA
* * * * * * *
799933 TGCCACCGACTTGTGTGGGTTTGAAATGATGTCACTGACTTGTGGGCTTTGAAATGGGTTGCCAC
1 TGCCACTGACTTGTG-GGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAA-AGGATGCCAC
* * * *
799998 CGACTTGTGTGGTCTTTCAAATGAGT
64 TGAC-T-TGTGGACTTTGAAA-G-GA
* * * * *
800024 TGCCACCGACTTGTGTAGGCTTTCAAATGATGCCACTGACTTGTGGGCTTT-AAAATGGGTTGCC
1 TGCCACTGACTTGTG--GGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAA--GGATGCC
* * *
800088 ACCGACTTGTGTGGGCTTTGAAATGGGT
62 ACTGAC-T-TGTGGACTTTGAAA--GGA
** * * * * * *
800116 TGCCACCAACTTGTGTAGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATGAGTT
1 TGCCACTGACTTGTG--GGCTTTGAAA--AGATGCCACCGAC-T-TGTGGGCTTTGAAAAG-GAT
*
800181 GCCACTGACTTGTGTAGGCTTTGAAAGGA
59 GCCACTGACTTGTG--GACTTTGAAAGGA
** *
800210 TGCCACTGACTTGTGGGCTTT-AAAATGATGCCACTAACTTGTGGGCTTT-AAAAGGGTGCTCCA
1 TGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATG--CCA
* * * *
800273 CGGAGTTGTGGAC-TTAAAAAGA
63 CTGACTTGTGGACTTTGAAAGGA
* * * * * * *
800295 TGCCAC-GAAGTTGCGGAC-TT-AAAAGGATGCCACAGAGTTGTGGAC-TT-AAAAGGGTGCCA-
1 TGCCACTG-ACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCAC
* * * *
800354 TGGAATGGGGGACTTT-AAAAGA
64 T-GACTTGTGGACTTTGAAAGGA
* * * * * * * * *
800376 GTGCCACGGAGTTATGGAC-TT-AAAAGGGTGCCACGGAGTTGTGGACTTT-AAAAGGGT-CCAC
1 -TGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCAC
* * ** **
800437 AGAGTTGTGGAC-TAAAAAAAA
64 TGACTTGTGGACTTTGAAAGGA
** * * * * * * * *
800458 TGCCACAAAGTTGTGGACTTT-AAAAGGTTGCTACGGAGTTGTGGACTTT-AAAAGGTTGCCAC-
1 TGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCACT
* * *
800520 GAAGTTATGGACTTTAAAAGGA
65 G-ACTTGTGGACTTTGAAAGGA
* * * * * * *
800542 TGCCACAGAATTGTGGACTTT-AAAAGGATGCCACAGAGTTGTGGACTTT-AAAAGGATGCCACG
1 TGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCACT
* * *
800605 GAGTTGTGGAC-TTAAAAGGT
65 GACTTGTGGACTTTGAAAGGA
* * ** * * * * *
800625 TGCCACAGAGC-TGTGGAC-TT-AAAAGGATGCCACAAAGTTGTGGAC-TT-AAAGGGTTACCAC
1 TGCCACTGA-CTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCAC
* * *
800685 GGAGTTGTGGAC-TTAAAAGGA
64 TGACTTGTGGACTTTGAAAGGA
* * * * * * * *
800706 TGCCACGGAGTTGTGGACTTT-AAAAGGATGCCACGGAGTTGTGGAC-TT-AAAAGGTTGCCACA
1 TGCCACTGACTTGTGGGCTTTGAAAA-GATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCACT
* *
800768 AAGTTGTGGACTT
65 GACTTGTGGACTT
800781 AAAAAGAAAT
Statistics
Matches: 1120, Mismatches: 130, Indels: 117
0.82 0.10 0.09
Matches are distributed among these distances:
81 80 0.07
82 167 0.15
83 62 0.06
84 175 0.16
85 27 0.02
86 28 0.03
87 7 0.01
88 41 0.04
89 2 0.00
90 32 0.03
91 71 0.06
92 175 0.16
93 23 0.02
94 56 0.05
95 87 0.08
96 84 0.08
97 3 0.00
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (85 bp):
TGCCACTGACTTGTGGGCTTTGAAAAGATGCCACCGACTTGTGGGCTTTGAAAAGGATGCCACTG
ACTTGTGGACTTTGAAAGGA
Found at i:799675 original size:64 final size:63
Alignment explanation
Indices: 799543--800206 Score: 781
Period size: 64 Copynumber: 10.7 Consensus size: 63
799533 GCCACTGACT
* * * * **
799543 TGTGGGCTTTGAAA-GGGTGCCACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACTGAC-T-
1 TGTGGGCTTTGAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * *
799599 TGTGGGCTTTGAAATAGGTTGCCACCAACTTATGTGGGCTTTGAAATGGGTTGCCATCAACTTT
1 TGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
799663 TGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT--GATGCCACTAAC-T-
1 TGTGGGCTTTGAAATG-GTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
799723 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * * *
799787 TGTGGGCTTTGAAATGGTTGCCACCAACTTGTGTGGCCTTTGAAATGAGTTGTCACCGACTTG
1 TGTGGGCTTTGAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
*
799850 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGGTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * **
799914 TGTGGGCTTTCAAATGAGTTGCCACCGACTTGTGTGGG-TTTGAAAT--GATGTCACTGAC-T-
1 TGTGGGCTTTGAAATG-GTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * *
799973 TGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGTCTTTCAAATGAGTTGCCACCGACTTG
1 TGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * * * * *
800037 TGTAGGCTTTCAAAT-GATGCCACTGAC-T-TGTGGGCTTTAAAATGGGTTGCCACCGACTTG
1 TGTGGGCTTTGAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* *
800097 TGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTAGGCTTTGAAATGGGTTGCCACCAACTTG
1 TGTGGGCTTTGAAAT-GGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
* * *
800161 TGTGGGCTTTCAAATGAGTTGCCACTGACTTGTGTAGGCTTTGAAA
1 TGTGGGCTTTGAAATG-GTTGCCACCGACTTGTGTGGGCTTTGAAA
800207 GGATGCCACT
Statistics
Matches: 526, Mismatches: 55, Indels: 46
0.84 0.09 0.07
Matches are distributed among these distances:
56 14 0.03
58 10 0.02
59 35 0.07
60 110 0.21
61 11 0.02
62 55 0.10
63 73 0.14
64 218 0.41
ACGTcount: A:0.20, C:0.18, G:0.30, T:0.32
Consensus pattern (63 bp):
TGTGGGCTTTGAAATGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTG
Found at i:799732 original size:92 final size:93
Alignment explanation
Indices: 799382--800237 Score: 819
Period size: 92 Copynumber: 9.4 Consensus size: 93
799372 AGGTTTAGAA
*
799382 GGGTTGCCACCGACTTGTGTAGGCTTTAGAGAA--AGTTGCCACCGACTTGTGTGGGCTTT-AAA
1 GGGTTGCCACCGACTTGTGTGGGCTTT-GA-AATGAGTTGCCACCGACTTGTGTGGGCTTTGAAA
* * * **
799444 AGGATGCCACTGACTTGTGGATTTTGAGAA-
64 TGGTTGCCACCGACTTGTGGGCTTTGA-AAT
* * * * ** *
799474 --GATGCCTCTGAC-T-TGTGGGCTTTGAAA--AGATGCCACCGAC-T-TGTGGATTTTGAAA-A
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAATG
* *
799530 GATGCCACTGACTTGTGGGCTTTGAAA-
66 GTTGCCACCGACTTGTGGGCTTTGAAAT
* * *
799557 GGG-TGCCACTGAC-T-TGTGGGCTTTGAAA--AGATGCCACTGAC-T-TGTGGGCTTTGAAATA
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT-
*
799615 GGTTGCCACCAACTTATGTGGGCTTTGAAAT
65 GGTTGCCACCGAC-T-TGTGGGCTTTGAAAT
* * *
799646 GGGTTGCCATCAACTTTTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT-
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAATG
* **
799710 GATGCCACTAACTTGTGGGCTTTGAAAT
66 GTTGCCACCGACTTGTGGGCTTTGAAAT
* *
799738 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTGAAATG
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAATG
*
799803 GTTGCCACCAACTTGTGTGGCCTTTGAAAT
66 GTTGCCACCGACTTGTG-GG-CTTTGAAAT
* * * *
799833 GAGTTGTCACCGACTTGTGTGGGCTTTGAAATGGGTTGCCACCGACTTGTGTGGGGTTTGAAATG
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT-
* *
799898 GGTTGCCACCAACTTGTGTGGGCTTTCAAAT
65 GGTTGCCACCGAC-T-TGTGGGCTTTGAAAT
* * *
799929 GAGTTGCCACCGACTTGTGTGGG-TTTGAAATGA--TGTCACTGAC-T-TGTGGGCTTTGAAATG
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT-
*
799989 GGTTGCCACCGACTTGTGTGGTCTTTCAAAT
65 GGTTGCCACCGACTTGTG-GG-CTTTGAAAT
* * * * *
800020 GAGTTGCCACCGACTTGTGTAGGCTTTCAAATGA--TGCCACTGAC-T-TGTGGGCTTTAAAATG
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAAT-
800081 GGTTGCCACCGACTTGTGTGGGCTTTGAAAT
65 GGTTGCCACCGAC-T-TGTGGGCTTTGAAAT
* * * * *
800112 GGGTTGCCACCAACTTGTGTAGGCTTTGAAATGGGTTGCCACCAACTTGTGTGGGCTTTCAAATG
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAATG
*
800177 AGTTGCCACTGACTTGTGTAGGCTTTGAAA-
66 -GTTGCCACCGACTTGTG--GGCTTTGAAAT
* * *
800207 -GGATGCCACTGAC-T-TGTGGGCTTTAAAATGA
1 GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGA
800238 TGCCACTAAC
Statistics
Matches: 669, Mismatches: 62, Indels: 66
0.84 0.08 0.08
Matches are distributed among these distances:
83 2 0.00
84 80 0.12
85 5 0.01
86 23 0.03
87 3 0.00
88 23 0.03
89 8 0.01
90 19 0.03
91 59 0.09
92 188 0.28
93 28 0.04
94 49 0.07
95 82 0.12
96 93 0.14
97 3 0.00
98 4 0.01
ACGTcount: A:0.21, C:0.18, G:0.29, T:0.32
Consensus pattern (93 bp):
GGGTTGCCACCGACTTGTGTGGGCTTTGAAATGAGTTGCCACCGACTTGTGTGGGCTTTGAAATG
GTTGCCACCGACTTGTGGGCTTTGAAAT
Found at i:800394 original size:28 final size:28
Alignment explanation
Indices: 800199--800795 Score: 633
Period size: 27 Copynumber: 21.6 Consensus size: 28
800189 CTTGTGTAGG
* * * *
800199 CTTTGAAAGGATGCCACTGACTTGTGGG
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* ** * *
800227 CTTTAAAATGATGCCACTAACTTGTGGG
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
*
800255 CTTTAAAAGGGTGCTCCACGGAGTTGTGGA
1 CTTTAAAAGGATG--CCACGGAGTTGTGGA
* * *
800285 C-TTAAAAAGATGCCACGAAGTTGCGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
*
800312 C-TTAAAAGGATGCCACAGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* * * * *
800339 C-TTAAAAGGGTGCCATGGAATGGGGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
*
800366 CTTTAAAA-GAGTGCCACGGAGTTATGGA
1 CTTTAAAAGGA-TGCCACGGAGTTGTGGA
*
800394 C-TTAAAAGGGTGCCACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* *
800421 CTTTAAAAGGGT-CCACAGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* ** **
800448 C-TAAAAAAAATGCCACAAAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* *
800475 CTTTAAAAGGTTGCTACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* * *
800503 CTTTAAAAGGTTGCCACGAAGTTATGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* *
800531 CTTTAAAAGGATGCCACAGAATTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
*
800559 CTTTAAAAGGATGCCACAGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
800587 CTTTAAAAGGATGCCACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* * *
800615 C-TTAAAAGGTTGCCACAGAGCTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
**
800642 C-TTAAAAGGATGCCACAAAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* * *
800669 C-TTAAAGGGTTACCACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
800696 C-TTAAAAGGATGCCACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
800723 CTTTAAAAGGATGCCACGGAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* **
800751 C-TTAAAAGGTTGCCACAAAGTTGTGGA
1 CTTTAAAAGGATGCCACGGAGTTGTGGA
* *
800778 CTTAAAAAGAAATGCCAC
1 CTTTAAAAG-GATGCCAC
800796 TAAATCATGG
Statistics
Matches: 484, Mismatches: 74, Indels: 21
0.84 0.13 0.04
Matches are distributed among these distances:
26 6 0.01
27 230 0.48
28 221 0.46
29 15 0.03
30 12 0.02
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.24
Consensus pattern (28 bp):
CTTTAAAAGGATGCCACGGAGTTGTGGA
Found at i:800399 original size:109 final size:109
Alignment explanation
Indices: 800204--800784 Score: 670
Period size: 109 Copynumber: 5.3 Consensus size: 109
800194 GTAGGCTTTG
* * * * * * *
800204 AAAGGATGCCACTGACTTGTGGGCTTTAAAATGATGCCAC-TAACTTGTGGGCTTTAAAAGGGTG
1 AAAGGATGCCACAGAGTTGTGGAC-TTAAAAGGATGCCACGGAA-TTGTGGACTTTAAAAGGATG
* *
800268 CTCCACGGAGTTGTGGACTTAAAAAGATGCCACGAAGTTGCGGACTTA
64 --CCACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTA
* * * *
800316 AAAGGATGCCACAGAGTTGTGGACTTAAAAGGGTGCCATGGAATGGGGGACTTTAAAA-GAGTGC
1 AAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAATTGTGGACTTTAAAAGGA-TGC
* * *
800380 CACGGAGTTATGGACTTAAAAGGGTGCCACGGAGTTGTGGACTTTA
65 CACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGAC-TTA
* * ** * *
800426 AAAGGGT-CCACAGAGTTGTGGACTAAAAAAAATGCCAC-AAAGTTGTGGACTTTAAAAGGTTGC
1 AAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAA-TTGTGGACTTTAAAAGGATGC
* * *
800489 TACGGAGTTGTGGACTTTAAAAGGTTGCCACGAAGTTATGGACTTTA
65 CACGGAGTTGTGGAC-TTAAAAGGATGCCACGAAGTTGTGGAC-TTA
* * *
800536 AAAGGATGCCACAGAATTGTGGACTTTAAAAGGATGCCACAGAGTTGTGGACTTTAAAAGGATGC
1 AAAGGATGCCACAGAGTTGTGGAC-TTAAAAGGATGCCACGGAATTGTGGACTTTAAAAGGATGC
* *
800601 CACGGAGTTGTGGACTTAAAAGGTTGCCAC-AGAGCTGTGGACTTA
65 CACGGAGTTGTGGACTTAAAAGGATGCCACGA-AGTTGTGGACTTA
* * * * *
800646 AAAGGATGCCACAAAGTTGTGGACTTAAAGGGTTACCACGGAGTTGTGGAC-TTAAAAGGATGCC
1 AAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAATTGTGGACTTTAAAAGGATGCC
*
800710 ACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTA
66 ACGGAGTTGTGGAC-TTAAAAGGATGCCACGAAGTTGTGGACTTA
* *
800755 AAAGGTTGCCACAAAGTTGTGGACTTAAAA
1 AAAGGATGCCACAGAGTTGTGGACTTAAAA
800785 AGAAATGCCA
Statistics
Matches: 404, Mismatches: 53, Indels: 27
0.83 0.11 0.06
Matches are distributed among these distances:
108 29 0.07
109 170 0.42
110 71 0.18
111 64 0.16
112 69 0.17
113 1 0.00
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.24
Consensus pattern (109 bp):
AAAGGATGCCACAGAGTTGTGGACTTAAAAGGATGCCACGGAATTGTGGACTTTAAAAGGATGCC
ACGGAGTTGTGGACTTAAAAGGATGCCACGAAGTTGTGGACTTA
Found at i:800809 original size:248 final size:246
Alignment explanation
Indices: 800204--800810 Score: 740
Period size: 248 Copynumber: 2.4 Consensus size: 246
800194 GTAGGCTTTG
* * * * ** * * *
800204 AAAGGATGCCACTGACTTGTGGGCTTTAAAATGATGCCACTAACTTGTGGGCTTTAAAAGGGTGC
1 AAAGGATGCCACAGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGTTG-
* * *
800269 TCCACGGAGTTGTGGACTTAAAAAGATGCCACGAAGTTGCGGAC-TTAAAAGGATGCCACAGAGT
65 -CCACGAAGTTGTGGACTTAAAAAGATGCCAC-AAATTGTGGACTTTAAAAGGATGCCACAGAGT
* * * *
800333 TGTGGACTTAAAAGGGTGCCATGGAATGGGGGACTTTAAAAGAGTGCCACGGAGTTATGGACTTA
128 TGTGGACTTAAAAGGATGCCACGGAATGGGGGACTTTAAAAGAGTGCCACAGAGCTATGGACTTA
* **
800398 AAAGGGTGCCACGGAGTTGTGGACTTTAAAAGGGTCCACAGAGTTGTGGACTAA
193 AAAGGATGCCACAAAGTTGTGGACTTTAAAAGGGTCCACAGAGTTGTGGACTAA
** * * *
800452 AAAAAATGCCACAAAGTTGTGGACTTTAAAAGGTTGCTACGGAGTTGTGGACTTTAAAAGGTTGC
1 AAAGGATGCCACAGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGTTGC
* *
800517 CACGAAGTTATGGACTTTAAAAGGATGCCACAGAATTGTGGACTTTAAAAGGATGCCACAGAGTT
66 CACGAAGTTGTGGAC-TTAAAAAGATGCCACA-AATTGTGGACTTTAAAAGGATGCCACAGAGTT
* * * *
800582 GTGGACTTTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAG-GTTGCCACAGAGCTGTGGACTT
129 GTGGAC-TTAAAAGGATGCCACGGAATGGGGGACTTTAAAAGAG-TGCCACAGAGCTATGGACTT
* *
800645 AAAAGGATGCCACAAAGTTGTGGAC-TT-AAAGGGTTACCACGGAGTTGTGGACTTA
192 AAAAGGATGCCACAAAGTTGTGGACTTTAAAAGGG-T-CCACAGAGTTGTGGACTAA
*
800700 AAAGGATGCCACGGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGAC-TTAAAAGGTTGC
1 AAAGGATGCCACAGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGTTGC
* **
800764 CACAAAGTTGTGGACTTAAAAAGAAATGCCACTAAATCATGGACTTT
66 CACGAAGTTGTGGACTTAAAAAG--ATGCCAC-AAATTGTGGACTTT
800811 GAAGAGATTA
Statistics
Matches: 306, Mismatches: 43, Indels: 20
0.83 0.12 0.05
Matches are distributed among these distances:
246 28 0.09
247 51 0.17
248 204 0.67
249 23 0.08
ACGTcount: A:0.32, C:0.15, G:0.29, T:0.25
Consensus pattern (246 bp):
AAAGGATGCCACAGAGTTGTGGACTTTAAAAGGATGCCACGGAGTTGTGGACTTTAAAAGGTTGC
CACGAAGTTGTGGACTTAAAAAGATGCCACAAATTGTGGACTTTAAAAGGATGCCACAGAGTTGT
GGACTTAAAAGGATGCCACGGAATGGGGGACTTTAAAAGAGTGCCACAGAGCTATGGACTTAAAA
GGATGCCACAAAGTTGTGGACTTTAAAAGGGTCCACAGAGTTGTGGACTAA
Found at i:804281 original size:33 final size:33
Alignment explanation
Indices: 804244--804310 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
804234 TTCAACGATT
804244 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
804277 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
804310 T
1 T
804311 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:804282 original size:13 final size:13
Alignment explanation
Indices: 804264--804288 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
804254 CATAAAATGT
804264 TGTATCGATACAA
1 TGTATCGATACAA
804277 TGTATCGATACA
1 TGTATCGATACA
804289 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:804372 original size:13 final size:13
Alignment explanation
Indices: 804354--804378 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
804344 ATTACTCACA
804354 TGTATCGATACAT
1 TGTATCGATACAT
804367 TGTATCGATACA
1 TGTATCGATACA
804379 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:804515 original size:52 final size:52
Alignment explanation
Indices: 804387--804507 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
804377 CACTGATCTT
*
804387 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
804439 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
804491 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
804508 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:811706 original size:16 final size:16
Alignment explanation
Indices: 811676--811706 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
811666 TTCTTTTCCA
*
811676 AAAAAAGAAACAAAAC
1 AAAAAAGAAAAAAAAC
811692 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
811707 AGAGAGGAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.87, C:0.06, G:0.06, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAC
Found at i:812651 original size:1 final size:1
Alignment explanation
Indices: 812647--812672 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
812637 CTTTTTTTTT
812647 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
812673 GTCCACGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:812708 original size:31 final size:30
Alignment explanation
Indices: 812670--812784 Score: 151
Period size: 30 Copynumber: 3.7 Consensus size: 30
812660 AAAAAAAAAA
*
812670 AAAGTCCACGACTCAGTGGCAATCTCTGCTC
1 AAAGTCCACGACTCAGTGGC-ATCTTTGCTC
* *
812701 AAAGTCCACGACTCAGTGGCATCTTTTTCTTT
1 AAAGTCCACGACTCAGTGGCATC-TTTGC-TC
*
812733 AAAGTCCACAACTCAGTGGCAT-TTTGTCTC
1 AAAGTCCACGACTCAGTGGCATCTTTG-CTC
812763 AAAGTCCACGACTCAGTGGCAT
1 AAAGTCCACGACTCAGTGGCAT
812785 TTTTTCTTTA
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
30 28 0.38
31 24 0.32
32 22 0.30
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (30 bp):
AAAGTCCACGACTCAGTGGCATCTTTGCTC
Found at i:812779 original size:62 final size:60
Alignment explanation
Indices: 812670--812819 Score: 210
Period size: 62 Copynumber: 2.4 Consensus size: 60
812660 AAAAAAAAAA
* *
812670 AAAGTCCACGACTCAGTGGCAATCTCTGCTCAAAGTCCACGACTCAGTGGCATCTTTTTCTTT
1 AAAGTCCACAACTCAGTGGC-AT-TTTGCTCAAAGTCCACGACTCAGTGGCAT-TTTTTCTTT
812733 AAAGTCCACAACTCAGTGGCATTTTGTCTCAAAGTCCACGACTCAGTGGCATTTTTTCTTT
1 AAAGTCCACAACTCAGTGGCATTTTG-CTCAAAGTCCACGACTCAGTGGCATTTTTTCTTT
* * *
812794 AAAGCCCACAATTCCGTGGCACTTTT
1 AAAGTCCACAACTCAGTGGCA-TTTT
812820 TTCATCTTTA
Statistics
Matches: 80, Mismatches: 5, Indels: 5
0.89 0.06 0.06
Matches are distributed among these distances:
61 30 0.38
62 31 0.39
63 19 0.24
ACGTcount: A:0.25, C:0.27, G:0.17, T:0.31
Consensus pattern (60 bp):
AAAGTCCACAACTCAGTGGCATTTTGCTCAAAGTCCACGACTCAGTGGCATTTTTTCTTT
Found at i:812844 original size:34 final size:32
Alignment explanation
Indices: 812706--813426 Score: 483
Period size: 34 Copynumber: 21.7 Consensus size: 32
812696 TGCTCAAAGT
* * * *
812706 CCACGACTCAGTGGCA-TCTTTTTCTTTAAAGT
1 CCACAACTCCGTGGCACT-TTTTTCTTTTAAGC
* * ** *
812738 CCACAACTCAGTGGCA-TTTTGTC-TCAAAGT
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAGC
* * *
812768 CCACGACTCAGTGGCA-TTTTTTCTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAGC
* *
812799 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTC-T-TTTAAGC
*
812833 CCACAACTCCGTGGCAC-----CCTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAGC
* *
812861 CCACAATTCCGTGGCACTTTTTTCATCTTTAAGT
1 CCACAACTCCGTGGCACTTTTTTC-T-TTTAAGC
*
812895 CCACAACTCCGTGGCACCTTTTTCTGTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCT-TTT-AAGC
812929 CCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGC
1 CCACAACTCCGTGGCACT-TTTTT--CTTTT--AAGC
812966 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAGC
*
812999 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCACT-TTTTT--CTTTTAAGC
**
813034 CCACAACTCCGTGGCATCTTTCTCCCTTCTTAAAGCC
1 CCACAACTCCGTGGCA-CTTT-TTTCTT-TT-AAG-C
* * * *
813071 CACACAAGTCGGTGGCAACCTTCTTCTTTTCAAAGC
1 C-CACAACTCCGTGGC-ACTTTTTTCTTTT--AAGC
* *
813107 CCACAACTCCGTGGCACCTTCTTCTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAGC
**
813140 CCACAACTTTGTGGCACTCTTTTTTCCTTTTCAAAGC
1 CCACAACTCCGTGGCA--CTTTTTT-CTTTT--AAGC
*
813177 CCACAACTCCGTGGCACCTTTTTCTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAGC
* * ****
813210 CCACAACTCTGTGGCACCTACGACTTTGT--G-
1 CCACAACTCCGTGGCACTTTTTTCTTT-TAAGC
* * ** * *
813240 GCAC-TCT-C-TTTC-C---CTT-TTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTTAAGC
* *
813264 CCACAACTCCGTGGCACCTTTTTCCGTTTAAAGC
1 CCACAACTCCGTGGCA-CTTTTTTC-TTTTAAGC
813298 CCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGC
1 CCACAACTCCGTGGCACT-TTTTT--CTTTT--AAGC
813335 CCACAACTCCGTGGCACTTTTTTCTTTTAAAGC
1 CCACAACTCCGTGGCACTTTTTTCTTTT-AAGC
*
813368 CCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGT
1 CCACAACTCCGTGGCACT-TTTTT--CTTTTAAGC
813403 CCACAACTCCGTGGCATCTTTTTT
1 CCACAACTCCGTGGCA-CTTTTTT
813427 TCCTTCCCAA
Statistics
Matches: 570, Mismatches: 64, Indels: 107
0.77 0.09 0.14
Matches are distributed among these distances:
22 3 0.01
23 2 0.00
24 3 0.01
25 2 0.00
26 2 0.00
27 7 0.01
28 20 0.04
29 4 0.01
30 30 0.05
31 24 0.04
32 24 0.04
33 100 0.18
34 137 0.24
35 81 0.14
36 41 0.07
37 74 0.13
38 15 0.03
39 1 0.00
ACGTcount: A:0.21, C:0.32, G:0.13, T:0.34
Consensus pattern (32 bp):
CCACAACTCCGTGGCACTTTTTTCTTTTAAGC
Found at i:813002 original size:70 final size:70
Alignment explanation
Indices: 812761--813426 Score: 674
Period size: 70 Copynumber: 9.4 Consensus size: 70
812751 GCATTTTGTC
* * * *
812761 TCAAAGTCCACGACTCAGTGGCA-TTTTTTC-TTTAAAGCCCACAATTCCGTGGCACT-TTTTT-
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
*
812822 CATCTT
66 CCT-TT
* * *
812828 T--AAGTCCACAACTCCGTGGCAC-----CCTTTTAAAGCCCACAATTCCGTGGCACT-TTTTT-
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
*
812884 CATCTT
66 CCT-TT
* *
812890 T--AAGTCCACAACTCCGTGGCACCTTTTTCTGTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCT-TTTAAAGCCCACAACTCCGTGGCACTCTTTTT
812953 CCCTTT
65 CCCTTT
812959 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
813024 CCTTT
66 CCTTT
* ** * *
813029 T--AAGTCCACAACTCCGTGGCATCTTTCTCCCTTCTTAAAGCCCACACAAGTCGGTGGCAAC-C
1 TCAAAGCCCACAACTCCGTGGCA-CTTT-TTTCTT-TTAAAG-CC-CACAACTCCGTGGC-ACTC
*
813091 TTCTT--CTTT
60 TTTTTCCCTTT
* * ** *
813100 TCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
813165 CCTTT
66 CCTTT
* *
813170 TCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCACCTACGACT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCA-CT----CT
*
813235 TTGTGGCACTCTCTT
61 TT-T-TC-C-CT-TT
* *
813250 TCCCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCAC
1 T--C-----AAAGCCCACAACTCCGTGGCA-CTTTTTTCTTTTAAAGCCCACAACTCCGTGGCAC
813315 TCTTTTTCCCTTT
58 TCTTTTTCCCTTT
813328 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
813393 CCTTT
66 CCTTT
*
813398 T--AAGTCCACAACTCCGTGGCATCTTTTTT
1 TCAAAGCCCACAACTCCGTGGCA-CTTTTTT
813427 TCCTTCCCAA
Statistics
Matches: 522, Mismatches: 35, Indels: 82
0.82 0.05 0.13
Matches are distributed among these distances:
61 1 0.00
62 59 0.11
65 18 0.03
67 5 0.01
68 79 0.15
69 21 0.04
70 155 0.30
71 64 0.12
72 5 0.01
73 36 0.07
74 2 0.00
75 4 0.01
76 2 0.00
78 4 0.01
79 4 0.01
80 4 0.01
81 1 0.00
82 2 0.00
83 4 0.01
87 23 0.04
88 29 0.06
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.34
Consensus pattern (70 bp):
TCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CCTTT
Found at i:813383 original size:158 final size:157
Alignment explanation
Indices: 813096--813384 Score: 497
Period size: 158 Copynumber: 1.8 Consensus size: 157
813086 CAACCTTCTT
* **
813096 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCTTTTAAAGCCCACAACTTTGTGGCACTCTT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCGTTTAAAGCCCACAACTCCGTGGCACTCTT
* *
813161 TTTTCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCTGTGGCA
66 TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
813226 CCTACGACTTTGTGGCACTCTCTTTCC
131 CCTACGACTTTGTGGCACTCTCTTTCC
* *
813253 CTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCT
1 CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTT-CGTTTAAAGCCCACAACTCCGTGGCACTCT
*
813318 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTTTAAAGCCCACAACTCCGTGGC
65 TTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGC
813383 AC
130 AC
813385 TCTTTTTCCC
Statistics
Matches: 123, Mismatches: 8, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
157 32 0.26
158 91 0.74
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (157 bp):
CTTTTCAAAGCCCACAACTCCGTGGCACCTTCTTCGTTTAAAGCCCACAACTCCGTGGCACTCTT
TTTCCCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTTCTTTTAAAGCCCACAACTCCGTGGCA
CCTACGACTTTGTGGCACTCTCTTTCC
Found at i:813471 original size:32 final size:32
Alignment explanation
Indices: 813433--813524 Score: 159
Period size: 32 Copynumber: 2.8 Consensus size: 32
813423 TTTTTCCTTC
813433 CCAAAGCCCACACAAGTCGGTGGCAAC-TCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
813464 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAA-CTTCTT
813498 CCAAAGCCCACACAAGTCGGTGGCAAC
1 CCAAAGCCCACACAAGTCGGTGGCAAC
813525 CCCTCTAAGC
Statistics
Matches: 58, Mismatches: 0, Indels: 5
0.92 0.00 0.08
Matches are distributed among these distances:
31 2 0.03
32 25 0.43
33 25 0.43
34 6 0.10
ACGTcount: A:0.29, C:0.36, G:0.20, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACTTCTT
Found at i:813472 original size:104 final size:102
Alignment explanation
Indices: 813258--813476 Score: 264
Period size: 105 Copynumber: 2.1 Consensus size: 102
813248 TTTCCCTTTT
*
813258 TAAAGCCCACAACTCCGTGGCACCTTTTTCCGTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
** * *
813323 CCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTTCTTT
66 CCTTCCCAAAGCCCACAACTCCGTGGCAC-TTCTTC-TC
* *
813362 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAGTCCACAACTCCGTGGCA-TCTTTTT
1 TAAAGCCCACAACTCCGTGGCAC-CTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTC-TTTT
* * *
813426 TTCCTTCCCAAAGCCCACACAAGTCGGTGGCAAC-TCTTC-C
64 TCCCTTCCCAAAG-CC-CACAACTCCGTGGC-ACTTCTTCTC
813466 TAAAGCCCACA
1 TAAAGCCCACA
813477 CAAGTCGGTG
Statistics
Matches: 100, Mismatches: 10, Indels: 10
0.83 0.08 0.08
Matches are distributed among these distances:
104 36 0.36
105 44 0.44
106 6 0.06
107 12 0.12
108 2 0.02
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (102 bp):
TAAAGCCCACAACTCCGTGGCACCTTTTTCCCTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
CCTTCCCAAAGCCCACAACTCCGTGGCACTTCTTCTC
Found at i:813509 original size:33 final size:32
Alignment explanation
Indices: 813433--813525 Score: 161
Period size: 33 Copynumber: 2.9 Consensus size: 32
813423 TTTTTCCTTC
813433 CCAAAGCCCACACAAGTCGGTGGCAA-CTCTT
1 CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
813464 CCTAAAGCCCACACAAGTCGGTGGCAACCTTCTT
1 CC-AAAGCCCACACAAGTCGGTGGCAACC-TCTT
813498 CCAAAGCCCACACAAGTCGGTGGCAACC
1 CCAAAGCCCACACAAGTCGGTGGCAACC
813526 CCTCTAAGCC
Statistics
Matches: 59, Mismatches: 0, Indels: 4
0.94 0.00 0.06
Matches are distributed among these distances:
31 2 0.03
32 24 0.41
33 27 0.46
34 6 0.10
ACGTcount: A:0.29, C:0.37, G:0.19, T:0.15
Consensus pattern (32 bp):
CCAAAGCCCACACAAGTCGGTGGCAACCTCTT
Found at i:813648 original size:49 final size:49
Alignment explanation
Indices: 813537--814581 Score: 1355
Period size: 49 Copynumber: 21.5 Consensus size: 49
813527 CTCTAAGCCA
*
813537 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* * *
813589 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
813638 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
813690 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
813739 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
813791 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
813840 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
813889 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
813938 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
813987 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
814030 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
814079 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
814122 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCC
* *
814174 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
814223 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
814272 AATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
814321 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
814370 AATGTAGCTGGCCTTGACTCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * *
814413 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
*
814462 AATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
814505 AATATAGCTGGCCTTGAATTAGCATATTGGCACATTTTCCATCTTTAAGTTC
1 AATATAGCTGGCCTTGAATCAGCACATTGGCAC--CTT-CATCTTTAAGTCC
*
814557 AATGTAGCTGGCCTTGAATCAGCAC
1 AATATAGCTGGCCTTGAATCAGCAC
814582 GTTGACATCC
Statistics
Matches: 872, Mismatches: 85, Indels: 72
0.85 0.08 0.07
Matches are distributed among these distances:
43 155 0.18
45 4 0.00
47 2 0.00
49 507 0.58
50 10 0.01
51 4 0.00
52 190 0.22
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
AATATAGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:813945 original size:98 final size:98
Alignment explanation
Indices: 813537--814647 Score: 1642
Period size: 98 Copynumber: 11.4 Consensus size: 98
813527 CTCTAAGCCA
* *
813537 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
*
813602 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
813638 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
813703 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
813739 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
813804 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
813840 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
813905 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
813938 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
814003 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
814030 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
814095 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* *
814122 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
814187 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
63 TTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
*
814223 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
814288 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
814321 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
814386 ACTCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
814413 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
*
814478 AATCAGCACATTGGCA----C--CTTTAAGTCC
66 ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
* * * *
814505 AATATAGCTGGCCTTGAATTAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAATGTAGCTGGCC
* * *
814570 TTGAATCAGCACGTTGACATCCTTTTTCTCATCTTTAAG-CC
63 TTGACTCAGCACATTGGCA-CC----T-TCATCTTTAAGTCC
* * *
814611 TAATATCGTTGGCCGTGAATCAACATATTGGCATCTT
1 -AATATCGCTGGCCTTGAATCAGCATATTGGCATCTT
814648 TATCACTTTT
Statistics
Matches: 959, Mismatches: 26, Indels: 46
0.93 0.03 0.04
Matches are distributed among these distances:
92 261 0.27
94 10 0.01
95 86 0.09
98 282 0.29
99 7 0.01
101 273 0.28
105 6 0.01
106 2 0.00
107 32 0.03
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (98 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:814046 original size:92 final size:92
Alignment explanation
Indices: 813928--814581 Score: 1056
Period size: 92 Copynumber: 6.9 Consensus size: 92
813918 GCACCTTCAT
813928 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
813993 GCTGGCCTTGACTCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
814020 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
814085 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* *
814112 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAAT
814177 GTAGCTGGCCTTGACTCAGCACATTGGCACCTTC
63 GTAGCTGGCCTTGACTCAGCACATTGGCA----C
*
814211 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTCAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
814276 TAGCTGGCCTTGACTCAGCACATTGGCACCTTC
64 TAGCTGGCCTTGACTCAGCACATTGGCA----C
814309 ATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
1 --CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
814374 TAGCTGGCCTTGACTCAGCACATTGGCAC
64 TAGCTGGCCTTGACTCAGCACATTGGCAC
814403 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
*
814468 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGACTCAGCACATTGGCAC
* * * *
814495 CTTTAAGTCCAATATAGCTGGCCTTGAATTAGCATATTGGCACATTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGG--CATCTT-CATCTTTAAGTCCAAT
*
814560 GTAGCTGGCCTTGAATCAGCAC
63 GTAGCTGGCCTTGACTCAGCAC
814582 GTTGACATCC
Statistics
Matches: 537, Mismatches: 13, Indels: 21
0.94 0.02 0.04
Matches are distributed among these distances:
92 261 0.49
94 9 0.02
95 81 0.15
98 141 0.26
99 4 0.01
101 41 0.08
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGACTCAGCACATTGGCAC
Found at i:814390 original size:383 final size:383
Alignment explanation
Indices: 813537--814647 Score: 1855
Period size: 383 Copynumber: 2.8 Consensus size: 383
813527 CTCTAAGCCA
* *
813537 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCC
* *
813602 TTGACTCAGCACATTGGCACCTTCATCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTG
63 TTGACTCAGCACATTGGCA----C--CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTG
* *
813667 GCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTT
122 GCA--TCTT-CATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA----C--CTT
813732 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
178 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTA
813797 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
243 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAG
813862 CATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCA
308 CATATTGGCATCTTCATCTTCAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCA
813927 TCTTTAAGTCC
373 TCTTTAAGTCC
813938 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
814003 ACTCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
66 ACTCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
814068 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
131 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
814133 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCA
196 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCA
814198 CATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
261 CATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
814263 TTCAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
326 TTCAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
814321 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
814386 ACTCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
66 ACTCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
814451 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
131 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
* * * *
814516 CCTTGAATTAGCATATTGGCACATTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCA
196 CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCA
* * * * *
814581 CGTTGACATCCTTTTTCTCATCTTTAAG-CCTAATATCGTTGGCCGTGAATCAACATATTGGCAT
261 CATTGGCA-CC----T-TCATCTTTAAGTCC-AATATCGCTGGCCTTGAATCAGCATATTGGCAT
814645 CTT
319 CTT
814648 TATCACTTTT
Statistics
Matches: 688, Mismatches: 15, Indels: 26
0.94 0.02 0.04
Matches are distributed among these distances:
383 471 0.68
384 2 0.00
385 1 0.00
388 3 0.00
389 88 0.13
390 3 0.00
392 40 0.06
394 1 0.00
398 45 0.07
399 3 0.00
401 31 0.05
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.32
Consensus pattern (383 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTAGCTGGCCTTG
ACTCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCA
TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
CCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCA
CATTGGCACCTTCATCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATC
TTCAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCC
Found at i:815495 original size:33 final size:33
Alignment explanation
Indices: 815458--815524 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
815448 TTCAACGATT
815458 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
815491 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
815524 T
1 T
815525 TTAAGCTACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.34, C:0.12, G:0.13, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:815496 original size:13 final size:13
Alignment explanation
Indices: 815478--815502 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
815468 CATAAAATGT
815478 TGTATCGATACAA
1 TGTATCGATACAA
815491 TGTATCGATACA
1 TGTATCGATACA
815503 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:815586 original size:13 final size:13
Alignment explanation
Indices: 815568--815592 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
815558 ATTACTCACA
815568 TGTATCGATACAT
1 TGTATCGATACAT
815581 TGTATCGATACA
1 TGTATCGATACA
815593 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:815729 original size:52 final size:52
Alignment explanation
Indices: 815601--815721 Score: 215
Period size: 52 Copynumber: 2.3 Consensus size: 52
815591 CACTGATCTT
*
815601 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACATTATAAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
* *
815653 TGTATCGATACATGCCGGCAAATTTGCCCAGATGTATCGATACACTATTAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
815705 TGTATCGATACATGCAG
1 TGTATCGATACATGCAG
815722 ATAAATTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 65 1.00
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATAAAA
Found at i:824163 original size:20 final size:20
Alignment explanation
Indices: 824138--824214 Score: 93
Period size: 20 Copynumber: 3.9 Consensus size: 20
824128 GTAAAAAGAC
824138 AGAATGTATCGATACATTGA
1 AGAATGTATCGATACATTGA
* *
824158 AGAATGAATCGATACATTCA
1 AGAATGTATCGATACATTGA
* *
824178 TA-CATGTATCAATACATTGA
1 -AGAATGTATCGATACATTGA
*
824198 AAAATGTATCGATACAT
1 AGAATGTATCGATACAT
824215 CTAGGTATTT
Statistics
Matches: 47, Mismatches: 8, Indels: 4
0.80 0.14 0.07
Matches are distributed among these distances:
19 1 0.02
20 45 0.96
21 1 0.02
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.30
Consensus pattern (20 bp):
AGAATGTATCGATACATTGA
Found at i:828663 original size:30 final size:30
Alignment explanation
Indices: 828625--829033 Score: 387
Period size: 30 Copynumber: 13.7 Consensus size: 30
828615 AGTCGAGTAA
* *
828625 CCTT-TCAAAGTCTATAACTCCATGGCACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
*
828654 CCTTCTCAAAGTTCACAACTCCATGGCACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
*
828684 CCTTCTCAAAGTTCACAACTCCATGGCACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
**
828714 CCATT-TCAAAGTCCACAACTCTGTGGCACC
1 CC-TTCTCAAAGTCCACAACTCCATGGCACC
* * *
828744 CCATCTCAAAGTCCACAACTCCGTGGCACT
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* ** *
828774 GCTTCTCAAAGTCCACAACTCTGTGACACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* * * *
828804 CTTTTTCAAAGTCTACAACTACATGGCACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* * ** *
828834 CTTTTTCAAAGTCCACAACTCTGTGGTACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* * *
828864 CCTACTCAAAGTCCACAACTCCGTGGCAAC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
** * ** * *
828894 TTTTCTTAAAGTTTACAACTCTATGGCACTA
1 CCTTCTCAAAGTCCACAACTCCATGGCAC-C
*
828925 CCTTCTCAAAGTCCACAACTCCATGGCAAC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* * *
828955 CCTTATCAAAGTCCACAACTCCGTAGCACC
1 CCTTCTCAAAGTCCACAACTCCATGGCACC
* * * *
828985 CTTTGTCAAAGTCTACAACT-AAGTGGCA-C
1 CCTTCTCAAAGTCCACAACTCCA-TGGCACC
*
829014 CTTTCTC-AAGTCCACAACTC
1 CCTTCTCAAAGTCCACAACTC
829034 AGTGACAGCT
Statistics
Matches: 311, Mismatches: 63, Indels: 12
0.81 0.16 0.03
Matches are distributed among these distances:
28 11 0.04
29 12 0.04
30 264 0.85
31 24 0.08
ACGTcount: A:0.28, C:0.35, G:0.11, T:0.26
Consensus pattern (30 bp):
CCTTCTCAAAGTCCACAACTCCATGGCACC
Found at i:828780 original size:90 final size:89
Alignment explanation
Indices: 828627--829033 Score: 455
Period size: 90 Copynumber: 4.5 Consensus size: 89
828617 TCGAGTAACC
* * *
828627 TTTCAAAGTCTATAACTCCATGGCACCCCTTCTCAAAGTTCACAACTCCATGGCACCCCTTCTCA
1 TTTCAAAGTCTACAACTCTATGGCACCCCTTCTCAAAGTCCACAACTCCATGGCACCCCTTCTCA
* * *
828692 AAGTTCACAACTCCATGGCACCCCA
66 AAGTCCACAACTCCGTGGCA-CCCT
* * * * **
828717 TTTCAAAGTCCACAACTCTGTGGCACCCCATCTCAAAGTCCACAACTCCGTGGCACTGCTTCTCA
1 TTTCAAAGTCTACAACTCTATGGCACCCCTTCTCAAAGTCCACAACTCCATGGCACCCCTTCTCA
* *
828782 AAGTCCACAACTCTGTGACACCCTT
66 AAGTCCACAACTCCGTGGCACCC-T
* * ** * *
828807 TTTCAAAGTCTACAACTAC-ATGGCACCCTTTTTCAAAGTCCACAACTCTGTGGTACCCCTACTC
1 TTTCAAAGTCTACAACT-CTATGGCACCCCTTCTCAAAGTCCACAACTCCATGGCACCCCTTCTC
*
828871 AAAGTCCACAACTCCGTGGCA-ACT
65 AAAGTCCACAACTCCGTGGCACCCT
* * * *
828895 TTTCTTAAAGTTTACAACTCTATGGCACTACCTTCTCAAAGTCCACAACTCCATGGCAACCCTTA
1 TTTC--AAAGTCTACAACTCTATGGCAC-CCCTTCTCAAAGTCCACAACTCCATGGCACCCCTTC
*
828960 TCAAAGTCCACAACTCCGTAGCACCCT
63 TCAAAGTCCACAACTCCGTGGCACCCT
* *
828987 TTGTCAAAGTCTACAACT-AAGTGGCA-CCTTTCTC-AAGTCCACAACTC
1 TT-TCAAAGTCTACAACTCTA-TGGCACCCCTTCTCAAAGTCCACAACTC
829034 AGTGACAGCT
Statistics
Matches: 265, Mismatches: 43, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
88 18 0.07
89 11 0.04
90 163 0.62
91 67 0.25
92 4 0.02
93 2 0.01
ACGTcount: A:0.28, C:0.35, G:0.12, T:0.26
Consensus pattern (89 bp):
TTTCAAAGTCTACAACTCTATGGCACCCCTTCTCAAAGTCCACAACTCCATGGCACCCCTTCTCA
AAGTCCACAACTCCGTGGCACCCT
Found at i:829098 original size:32 final size:32
Alignment explanation
Indices: 829051--829291 Score: 167
Period size: 32 Copynumber: 7.8 Consensus size: 32
829041 GCTTACCCTA
* * *
829051 AAAGGCCACATAAGTTGGTGGCATCCTTTTTC
1 AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
*
829083 AAAGCCCACACAAGTTGGTTGCATCCTTTCTC
1 AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
* ** * *
829115 AAAGCCCGCATGAGTTAGTAGCA-CC---C-C
1 AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
* * * *
829142 AAAAGCCCATACAAGTTAGTGGCATCTTTTCCC
1 -AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
*
829175 AAAAGGCCACACAAGTTGGTGGCATCCTTTCTC
1 -AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
* * * * *** *
829208 AATGCCTACACGAGTTAGCAACA-CC---CTA
1 AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
*
829236 AAAGTCCACACAAGTTGGTGGCATCCTTTCTC
1 AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
* * *
829268 AAAGTCCACACGAGCTGGTGGCAT
1 AAAGCCCACACAAGTTGGTGGCAT
829292 TTTCAAAGTC
Statistics
Matches: 159, Mismatches: 40, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
27 1 0.01
28 36 0.23
29 3 0.02
31 4 0.03
32 86 0.54
33 29 0.18
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (32 bp):
AAAGCCCACACAAGTTGGTGGCATCCTTTCTC
Found at i:829200 original size:93 final size:92
Alignment explanation
Indices: 829045--829335 Score: 306
Period size: 93 Copynumber: 3.2 Consensus size: 92
829035 GTGACAGCTT
* * * *
829045 ACCCTAAAAGGCCACATAAGTTGGTGGCATCCTTTT-TCAAAGCCCACACAAGTTGGTTGCATCC
1 ACCCCAAAAGCCCACACAAGTTGGTGGCAT-CTTTTCTCAAAGCCCACACAAGTTGGTGGCATCC
* * * *
829109 TTTCTCAAAGCCCGCATGAGTTAGTAGC
65 TTTCTCAAAGCCCACACGAGTTAGCAAC
* * * *
829137 ACCCCAAAAGCCCATACAAGTTAGTGGCATCTTTTCCCAAAAGGCCACACAAGTTGGTGGCATCC
1 ACCCCAAAAGCCCACACAAGTTGGTGGCATCTTTTCTC-AAAGCCCACACAAGTTGGTGGCATCC
* *
829202 TTTCTCAATGCCTACACGAGTTAGCAAC
65 TTTCTCAAAGCCCACACGAGTTAGCAAC
* * * * * *
829230 ACCCTAAAAGTCCACACAAGTTGGTGGCATCCTTTCTCAAAGTCCACACGAGCTGGTGGCA---T
1 ACCCCAAAAGCCCACACAAGTTGGTGGCATCTTTTCTCAAAGCCCACACAAGTTGGTGGCATCCT
* * * *
829292 TT-TCAAAGTCCACACTAGCTGGCAAC
66 TTCTCAAAGCCCACACGAGTTAGCAAC
829318 A-CCCAAAAGCCCACACAA
1 ACCCCAAAAGCCCACACAA
829336 ATCAGTGGCA
Statistics
Matches: 166, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
87 15 0.09
88 19 0.11
89 3 0.02
91 5 0.03
92 46 0.28
93 78 0.47
ACGTcount: A:0.30, C:0.30, G:0.18, T:0.22
Consensus pattern (92 bp):
ACCCCAAAAGCCCACACAAGTTGGTGGCATCTTTTCTCAAAGCCCACACAAGTTGGTGGCATCCT
TTCTCAAAGCCCACACGAGTTAGCAAC
Found at i:829306 original size:28 final size:30
Alignment explanation
Indices: 829236--829313 Score: 97
Period size: 32 Copynumber: 2.6 Consensus size: 30
829226 CAACACCCTA
*
829236 AAAGTCCACACAAGTTGGTGGCATCCTTTCTC
1 AAAGTCCACACAAGCTGGTGGCA--CTTTCTC
*
829268 AAAGTCCACACGAGCTGGTGGCA-TTT-TC
1 AAAGTCCACACAAGCTGGTGGCACTTTCTC
*
829296 AAAGTCCACACTAGCTGG
1 AAAGTCCACACAAGCTGG
829314 CAACACCCAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
28 19 0.44
29 3 0.07
32 21 0.49
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (30 bp):
AAAGTCCACACAAGCTGGTGGCACTTTCTC
Found at i:829455 original size:52 final size:52
Alignment explanation
Indices: 829399--829775 Score: 354
Period size: 52 Copynumber: 7.2 Consensus size: 52
829389 AGCACTATTG
* *
829399 TCATCTTTAAGTCCAATG-CTGCTGGCCTTGAATCAACACATTGGCACCTTCA
1 TCATCTTTAAGTCCAATGTC-ACTGGCCTTGAATCAGCACATTGGCACCTTCA
*
829451 TCATCTTTAAGTCCAATGTC-GTAGGCCTTGAATCAGCACATTGGCA-CTCTCA
1 TCATCTTTAAGTCCAATGTCACT-GGCCTTGAATCAGCACATTGGCACCT-TCA
* * ** *
829503 TCATCTTTAAATCCAATATCACTGGCCTTGAATCAATATATTGGCACCGTT-A
1 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACC-TTCA
* *** * * * *
829555 TCATCTTTAAGTCCAATATTGTTGGCCCTAAATCAGCATATTAGCA-CTCTCA
1 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCT-TCA
* * ** **
829607 TCATCTTTAAGTCTAATGTCACTAGCCTTGAATCAATACATTGGCACCCCCA
1 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCA
* ** * * ** *
829659 TCATCTTTAAGTCCAATATGGCT-GCCTTTGAATTAGCAAATCAGCACCTTTA
1 TCATCTTTAAGTCCAATGTCACTGGCC-TTGAATCAGCACATTGGCACCTTCA
* *
829711 TCATCTTTAAGTCCAATGTCACTGACCTTGAATCAGCATATTGGCACTCTT-A
1 TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCAC-CTTCA
829763 TCATCTTTAAGTC
1 TCATCTTTAAGTC
829776 TAGTGTCGTA
Statistics
Matches: 261, Mismatches: 52, Indels: 24
0.77 0.15 0.07
Matches are distributed among these distances:
50 1 0.00
51 8 0.03
52 241 0.92
53 10 0.04
54 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (52 bp):
TCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAGCACATTGGCACCTTCA
Found at i:829498 original size:104 final size:103
Alignment explanation
Indices: 829381--829809 Score: 454
Period size: 104 Copynumber: 4.1 Consensus size: 103
829371 GCTTTGAAAT
* ** *
829381 AGCACATTAGCACTATTGTCATCTTTAAGTCCAATG-CTGCTGGCCTTGAATCAACACATTGGCA
1 AGCACATTAGCACTCTCATCATCTTTAAGTCCAATGTC-ACTGGCCTTGAATCAACACATTGGCA
*
829445 CCTTCATCATCTTTAAGTCCAATGTCGTAGGCCTTGAATC
65 CCTT-ATCATCTTTAAGTCCAATATCGTAGGCCTTGAATC
* * * * *
829485 AGCACATTGGCACTCTCATCATCTTTAAATCCAATATCACTGGCCTTGAATCAATATATTGGCAC
1 AGCACATTAGCACTCTCATCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCAC
* * * *
829550 CGTTATCATCTTTAAGTCCAATATTGTTGGCCCTAAATC
66 C-TTATCATCTTTAAGTCCAATATCGTAGGCCTTGAATC
* * * *
829589 AGCATATTAGCACTCTCATCATCTTTAAGTCTAATGTCACTAGCCTTGAATCAATACATTGGCAC
1 AGCACATTAGCACTCTCATCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCA-
** * *
829654 CCCCATCATCTTTAAGTCCAATATGGCT--GCCTTTGAATT
65 CCTTATCATCTTTAAGTCCAATATCG-TAGGCC-TTGAATC
* * * * * *
829693 AGCAAATCAGCAC-CTTTATCATCTTTAAGTCCAATGTCACTGACCTTGAATCAGCATATTGGCA
1 AGCACATTAGCACTC-TCATCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCA
* * * *
829757 CTCTTATCATCTTTAAGTCTAGTGTCGTAAGCCTTGAATC
65 C-CTTATCATCTTTAAGTCCAATATCGTAGGCCTTGAATC
829797 TA-CACATTAGCAC
1 -AGCACATTAGCAC
829810 ATTTGTCGAA
Statistics
Matches: 270, Mismatches: 45, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
103 6 0.02
104 254 0.94
105 10 0.04
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (103 bp):
AGCACATTAGCACTCTCATCATCTTTAAGTCCAATGTCACTGGCCTTGAATCAACACATTGGCAC
CTTATCATCTTTAAGTCCAATATCGTAGGCCTTGAATC
Found at i:829649 original size:156 final size:155
Alignment explanation
Indices: 829399--829809 Score: 484
Period size: 156 Copynumber: 2.6 Consensus size: 155
829389 AGCACTATTG
* * *
829399 TCATCTTTAAGTCCAATGCTGCTGGCCTTGAATCAACACATTGGCAC-CTTCATCATCTTTAAGT
1 TCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACTC-TCATCATCTTTAAGT
* * * *
829463 CCAATGTCGTAGGCCTTGAATCAGCACATTGGCACTCTCATCATCTTTAAATCCAATATCACTGG
65 CTAATGTCGTA-GCCTTGAATCAACACATTGGCACCCCCATCATCTTTAAATCCAATATCACT-G
* * **
829528 CC-TTGAATCAATATATTGGCACCGTTA
128 CCTTTGAATCAACAAATCAGCACCGTTA
* * * * *
829555 TCATCTTTAAGTCCAATATTGTTGGCCCTAAATCAGCATATTAGCACTCTCATCATCTTTAAGTC
1 TCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACTCTCATCATCTTTAAGTC
* * * **
829620 TAATGTCACTAGCCTTGAATCAATACATTGGCACCCCCATCATCTTTAAGTCCAATATGGCTGCC
66 TAATGTC-GTAGCCTTGAATCAACACATTGGCACCCCCATCATCTTTAAATCCAATATCACTGCC
* * *
829685 TTTGAATTAGCAAATCAGCACCTTTA
130 TTTGAATCAACAAATCAGCACCGTTA
** * *
829711 TCATCTTTAAGTCCAATGTCACTGACCTTGAATCAGCATATTGGCACTCTTATCATCTTTAAGTC
1 TCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACTCTCATCATCTTTAAGTC
* * *
829776 TAGTGTCGTAAGCCTTGAATCTACACATTAGCAC
66 TAATGTCGT-AGCCTTGAATCAACACATTGGCAC
829810 ATTTGTCGAA
Statistics
Matches: 213, Mismatches: 38, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
155 4 0.02
156 206 0.97
157 3 0.01
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.33
Consensus pattern (155 bp):
TCATCTTTAAGTCCAATGTTGCTGGCCTTGAATCAGCATATTGGCACTCTCATCATCTTTAAGTC
TAATGTCGTAGCCTTGAATCAACACATTGGCACCCCCATCATCTTTAAATCCAATATCACTGCCT
TTGAATCAACAAATCAGCACCGTTA
Found at i:829792 original size:52 final size:50
Alignment explanation
Indices: 829381--829809 Score: 308
Period size: 52 Copynumber: 8.3 Consensus size: 50
829371 GCTTTGAAAT
* * * *
829381 AGCACATTAGCACTATTGTCATCTTTAAGTCCAATG-CTGCTGGCCTTGAATC
1 AGCACATTGGCAC-CTTATCATCTTTAAGTCCAATGTC-G-TAGCCTTGAATC
*
829433 AACACATTGGCACCTTCATCATCTTTAAGTCCAATGTCGTAGGCCTTGAATC
1 AGCACATTGGCACCTT-ATCATCTTTAAGTCCAATGTCGTA-GCCTTGAATC
* * * * *
829485 AGCACATTGGCACTCTCATCATCTTTAAATCCAATATCACTGGCCTTGAATC
1 AGCACATTGGCAC-CTTATCATCTTTAAGTCCAATGTC-GTAGCCTTGAATC
** * * * * * *
829537 AATATATTGGCACCGTTATCATCTTTAAGTCCAATATTGTTGGCCCTAAATC
1 AGCACATTGGCACC-TTATCATCTTTAAGTCCAATGTCG-TAGCCTTGAATC
* * * * *
829589 AGCATATTAGCACTCTCATCATCTTTAAGTCTAATGTCACTAGCCTTGAATC
1 AGCACATTGGCAC-CTTATCATCTTTAAGTCCAATGTC-GTAGCCTTGAATC
** ** * * *
829641 AATACATTGGCACCCCCATCATCTTTAAGTCCAATATGGCT-GCCTTTGAATT
1 AGCACATTGGCA-CCTTATCATCTTTAAGTCCAATGTCG-TAGCC-TTGAATC
* ** *
829693 AGCAAATCAGCACCTTTATCATCTTTAAGTCCAATGTCACT-GACCTTGAATC
1 AGCACATTGGCACC-TTATCATCTTTAAGTCCAATGTC-GTAG-CCTTGAATC
* * *
829745 AGCATATTGGCACTCTTATCATCTTTAAGTCTAGTGTCGTAAGCCTTGAATC
1 AGCACATTGGCAC-CTTATCATCTTTAAGTCCAATGTCGT-AGCCTTGAATC
*
829797 TA-CACATTAGCAC
1 -AGCACATTGGCAC
829810 ATTTGTCGAA
Statistics
Matches: 298, Mismatches: 60, Indels: 38
0.75 0.15 0.10
Matches are distributed among these distances:
51 10 0.03
52 277 0.93
53 11 0.04
ACGTcount: A:0.28, C:0.25, G:0.14, T:0.33
Consensus pattern (50 bp):
AGCACATTGGCACCTTATCATCTTTAAGTCCAATGTCGTAGCCTTGAATC
Found at i:835732 original size:19 final size:19
Alignment explanation
Indices: 835694--835755 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 19
835684 AAGTAGTTAC
**
835694 ATCATTAATCTAATGGAAG
1 ATCATTAATCTAATACAAG
*
835713 ATCATTAATGTAATACAAG
1 ATCATTAATCTAATACAAG
** * *
835732 ATTGTCAATCTAACACAAG
1 ATCATTAATCTAATACAAG
835751 ATCAT
1 ATCAT
835756 CATCATCATG
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.11, T:0.31
Consensus pattern (19 bp):
ATCATTAATCTAATACAAG
Found at i:837984 original size:32 final size:33
Alignment explanation
Indices: 837921--837986 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
837911 TTCAATGATT
837921 TGTATCGATACATAAAGTATTGTATCAATACAA
1 TGTATCGATACATAAAGTATTGTATCAATACAA
* **
837954 TGTATCGATACAT-AAGTTTTGTATTGATACAA
1 TGTATCGATACATAAAGTATTGTATCAATACAA
837986 T
1 T
837987 TTAAGATACT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 17 0.57
33 13 0.43
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.38
Consensus pattern (33 bp):
TGTATCGATACATAAAGTATTGTATCAATACAA
Found at i:838045 original size:13 final size:13
Alignment explanation
Indices: 838027--838051 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
838017 ATTACTCAAA
838027 TGTATCGATACAT
1 TGTATCGATACAT
838040 TGTATCGATACA
1 TGTATCGATACA
838052 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:845073 original size:17 final size:17
Alignment explanation
Indices: 845039--845090 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 17
845029 CCGTAACAGT
* * *
845039 CAAAAGTAACACACAAA
1 CAAAAGTAAAAAAAAAA
845056 CAAAAGTAAAAAAAAAA
1 CAAAAGTAAAAAAAAAA
* *
845073 CAAAA-CACAAAAAAAA
1 CAAAAGTAAAAAAAAAA
845089 CA
1 CA
845091 GAACAAAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
16 11 0.37
17 19 0.63
ACGTcount: A:0.75, C:0.17, G:0.04, T:0.04
Consensus pattern (17 bp):
CAAAAGTAAAAAAAAAA
Found at i:845096 original size:14 final size:16
Alignment explanation
Indices: 845065--845100 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
845055 ACAAAAGTAA
845065 AAAAAAAACAAAACAC
1 AAAAAAAACAAAACAC
*
845081 AAAAAAAACAGAACA-
1 AAAAAAAACAAAACAC
845096 AAAAA
1 AAAAA
845101 GGTGCAAAGG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.83, C:0.14, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAAAAAACAAAACAC
Found at i:845445 original size:10 final size:10
Alignment explanation
Indices: 845430--845470 Score: 64
Period size: 10 Copynumber: 4.1 Consensus size: 10
845420 CCTAATCTTC
845430 ACAAAAAAAA
1 ACAAAAAAAA
845440 ACAAAAAAAA
1 ACAAAAAAAA
**
845450 TTAAAAAAAA
1 ACAAAAAAAA
845460 ACAAAAAAAA
1 ACAAAAAAAA
845470 A
1 A
845471 GAGAGGAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.88, C:0.07, G:0.00, T:0.05
Consensus pattern (10 bp):
ACAAAAAAAA
Found at i:845457 original size:20 final size:20
Alignment explanation
Indices: 845432--845469 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
845422 TAATCTTCAC
845432 AAAAAAAAACAAAAAAAATT
1 AAAAAAAAACAAAAAAAATT
845452 AAAAAAAAACAAAAAAAA
1 AAAAAAAAACAAAAAAAA
845470 AGAGAGGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.89, C:0.05, G:0.00, T:0.05
Consensus pattern (20 bp):
AAAAAAAAACAAAAAAAATT
Found at i:846535 original size:27 final size:27
Alignment explanation
Indices: 846497--846551 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
846487 CTTTTCCTTC
* *
846497 TAAGTCCACAACTCTGTGGCACCATTT
1 TAAGCCCACAACTCCGTGGCACCATTT
*
846524 TAAGCCCACAACTCCGTGGCACCTTTT
1 TAAGCCCACAACTCCGTGGCACCATTT
846551 T
1 T
846552 CTTTTCAAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.29
Consensus pattern (27 bp):
TAAGCCCACAACTCCGTGGCACCATTT
Found at i:846568 original size:34 final size:34
Alignment explanation
Indices: 846525--847879 Score: 830
Period size: 34 Copynumber: 41.8 Consensus size: 34
846515 GCACCATTTT
846525 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
846559 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* * *
846594 AAGTCCACAATTCTGT-GCGACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTCA
* * *
846628 AAGCCCACCATTCCGTGGCACCTTTTCCTTTT--
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * * *
846660 AAGTCCACGACAT-AGTGGCATC-TTGTC---TCA
1 AAGCCCACAAC-TCCGTGGCACCTTTTTCTTTTCA
* * ** *
846690 AAGTCCACGACTTAGTGGCATCC-TTTTC--TGCA
1 AAGCCCACAACTCCGTGGCA-CCTTTTTCTTTTCA
* * *
846722 AAGCCCACAACTACGTGGCA-CTCTTTTC-CTTCT
1 AAGCCCACAACTCCGTGGCACCT-TTTTCTTTTCA
* * *
846755 AAGTCCATAACTCTC-TGGCACC-----ATTTT--
1 AAGCCCACAACTC-CGTGGCACCTTTTTCTTTTCA
* * *
846782 AAGCCTACAACTCTGTGGCACCTTTTTCGTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
846816 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* * *
846851 AAGTCCACAATTCCGTGGCACATTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * *
846885 AAGCGCACCACTTCGTGGCACCTTTTCCTTTT--
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * *
846917 AAGTCCACGACAT-AGTAGCA--TTTTGTC---TCA
1 AAGCCCACAAC-TCCGTGGCACCTTTT-TCTTTTCA
* * * *
846947 AAGTCCACGACTCAGTGGCA--TTTTT-TCTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * *
846978 AAGTCCACGACTCAGTGGCATCC-TTTTC--TTCA
1 AAGCCCACAACTCCGTGGCA-CCTTTTTCTTTTCA
** *
847010 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTCT
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCA
*
847045 AAGTCCACAACTCCGTGGCACC-----CTTTT-A
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847073 AAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTA
1 AAGCCCACAACTCCGTGGCAC-CTTTTTCTTTTCA
847108 AA-CCCACAACTCCGTGGCACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * *
847141 AAGCCCACCACTCTGTGGCACC-TTTTCTTTT-T
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * * *
847173 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* *
847207 AAGTCCACAACTCCGTGGCA---TCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847238 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* * *
847273 AAGTCCACAATTCCATGGCACC-----CTTTT--
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
847300 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* *
847334 AAGCCCACCACTCCGTGGCACC-TTTTCTTTT-T
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * *
847366 AAGTCCACGACCCCGTGGCA-CTTTGTTCCTTTCA
1 AAGCCCACAACTCCGTGGCACCTTT-TTCTTTTCA
* * *
847400 AAGTCCACAACTCTGTGGCA---TCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847431 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* *
847466 AAGTCCACAATTCCGTGGCACC-----CTTTT--
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847493 AAGCCCACAACTCCATGGCACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * *
847527 AAGCCCACCACTCCATGGCACC-TTTTCTTTT-T
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * * * *
847559 AAGTCCACGACCCCGTTGCACCTTGTTCCTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* *
847593 AAGTCCACAACTCCGTGGCA---TCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847624 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* * * *
847659 AAGTCCACAATTTCGTGGCACC----T-TTTT-G
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
847687 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* *
847721 AAGCCCACCACTCCGTGGCACC-TTTTCTTTT-T
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* * * * *
847753 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
* *
847787 AAGTCCACAACTCCGTGGCA---TCTTCTTTTCA
1 AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
*
847818 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--
1 AAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTCA
* * *
847853 AAGTCCACAATTCCGTGGCACCCTTTT
1 AAGCCCACAACTCCGTGGCACCTTTTT
847880 AAGTCTACAA
Statistics
Matches: 1058, Mismatches: 153, Indels: 220
0.74 0.11 0.15
Matches are distributed among these distances:
27 69 0.07
28 41 0.04
29 9 0.01
30 45 0.04
31 142 0.13
32 171 0.16
33 109 0.10
34 287 0.27
35 156 0.15
37 29 0.03
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (34 bp):
AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCA
Found at i:846696 original size:30 final size:30
Alignment explanation
Indices: 846660--846746 Score: 95
Period size: 30 Copynumber: 2.8 Consensus size: 30
846650 TTTTCCTTTT
846660 AAGTCCACGACATAGTGGCATCTTGTCT-CA
1 AAGTCCACGAC-TAGTGGCATCTTGTCTGCA
*
846690 AAGTCCACGACTTAGTGGCATCCTTTTCTGCA
1 AAGTCCACGAC-TAGTGGCAT-CTTGTCTGCA
* *
846722 AAGCCCACAACTACGTGGCACTCTT
1 AAGTCCACGACTA-GTGGCA-TCTT
846747 TTCCTTCTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
30 20 0.41
31 8 0.16
32 20 0.41
33 1 0.02
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.26
Consensus pattern (30 bp):
AAGTCCACGACTAGTGGCATCTTGTCTGCA
Found at i:846888 original size:257 final size:255
Alignment explanation
Indices: 846432--847407 Score: 1158
Period size: 257 Copynumber: 3.8 Consensus size: 255
846422 ATACCTTCTT
*
846432 AAAGTCCACGACTTAGTGGCATCCTTTTCTGCAAAGCCCACAACT-ACGTGGCACTCTTTTCCTT
1 AAAGTCCACGACTCAGTGGCAT-CTTTTCTGCAAAGCCCACAACTCA-GTGGCACTCTTTTCCTT
**
846496 CTAAGTCCACAACTCTGTGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAA
64 CTAAGTCCACAACTCCATGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAA
* * *
846561 GCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCTGT-GCGACCTTTTTCTTT
129 GCCCACAACTCCGTGGCACTCTTTTT-CCTTTTAAGTCCACAACTCCGTGGC-ACCTTTTTCTTT
846625 TCAAAGCCCACCATTCCGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTGGCATCTTGTCTC
192 TCAAAGCCCACCATTCCGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTGGCATCTTGTCTC
*
846689 AAAGTCCACGACTTAGTGGCATCCTTTTCTGCAAAGCCCACAACT-ACGTGGCACTCTTTTCCTT
1 AAAGTCCACGACTCAGTGGCAT-CTTTTCTGCAAAGCCCACAACTCA-GTGGCACTCTTTTCCTT
* * * *
846753 CTAAGTCCATAACTCTC-TGGCACCATTTTAAGCCTACAACTCTGTGGCACCTTTTTCGTTTCAA
64 CTAAGTCCACAACTC-CATGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAA
* * *
846817 AGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACATTTTTCTTT
128 AGCCCACAACTCCGTGGCACTCTTTTT-CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTT
* * *
846882 TCAAAGCGCACCACTT-CGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTAGCATTTTGTCTC
192 TCAAAGCCCACCA-TTCCGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTGGCATCTTGTCTC
* * * *
846946 AAAGTCCACGACTCAGTGGCATTTTTTCTTCAAAGTCCACGACTCAGTGGCA-TCCTTTT-CTTC
1 AAAGTCCACGACTCAGTGGCATCTTTTCTGCAAAGCCCACAACTCAGTGGCACT-CTTTTCCTTC
* * * * *
847009 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTCTAAGTCCACAACTCCGTGGCACC-----CT
65 TAAGTCCACAACTCCATGGCAC-C---AT---TT-TAAGCCCACAACTCCGTGGCACCTTTTTCT
* **
847069 TTT-AAAGCCCACAACTCCGTGGCACTCTTTTTCTTTTTAAACCCACAACTCCGTGGCACCTTTT
122 TTTCAAAGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTT
* * * *** *
847133 TCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTCTTTTTAAGTCCACGACCCCGTGGCACCTTG
187 TCTTTTCAAAGCCCACCATTCCGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTGGCATCTTG
847198 TTCCTTTC
252 -T-C--TC
* * * *
847206 AAAGTCCACAACTCCGTGGCATCTTCTT-TTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCT
1 AAAGTCCACGACTCAGTGGCATCTT-TTCTGCAAAGCCCACAACTCAGTGGCACTC-TTTT-CCT
* * *
847270 TTTAAGTCCACAATTCCATGGCACCCTTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAA
63 TCTAAGTCCACAACTCCATGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAA
* * * * *
847335 AGCCCACCACTCCGTGGCAC-C-TTTTCTTTTTAAGTCCACGACCCCGTGGCA-CTTTGTTCCTT
128 AGCCCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTT-TTCTTT
*
847397 TCAAAGTCCAC
192 TCAAAGCCCAC
847408 AACTCTGTGG
Statistics
Matches: 629, Mismatches: 59, Indels: 60
0.84 0.08 0.08
Matches are distributed among these distances:
254 1 0.00
255 45 0.07
256 112 0.18
257 291 0.46
258 13 0.02
259 43 0.07
260 52 0.08
261 28 0.04
262 3 0.00
263 41 0.07
ACGTcount: A:0.21, C:0.33, G:0.14, T:0.33
Consensus pattern (255 bp):
AAAGTCCACGACTCAGTGGCATCTTTTCTGCAAAGCCCACAACTCAGTGGCACTCTTTTCCTTCT
AAGTCCACAACTCCATGGCACCATTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGC
CCACAACTCCGTGGCACTCTTTTTCCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAA
AGCCCACCATTCCGTGGCACCTTTTCCTTTTAAGTCCACGACATAGTGGCATCTTGTCTC
Found at i:846951 original size:30 final size:31
Alignment explanation
Indices: 846917--847022 Score: 119
Period size: 31 Copynumber: 3.4 Consensus size: 31
846907 TTTTCCTTTT
846917 AAGTCCACGACAT-AGTAGCATTTTGTC-TCA
1 AAGTCCACGAC-TCAGTAGCATTTTGTCTTCA
* *
846947 AAGTCCACGACTCAGTGGCATTTTTTCTTCA
1 AAGTCCACGACTCAGTAGCATTTTGTCTTCA
*
846978 AAGTCCACGACTCAGTGGCATCCTTT-TCTTCA
1 AAGTCCACGACTCAGTAGCAT--TTTGTCTTCA
* *
847010 AAGCCCACAACTC
1 AAGTCCACGACTC
847023 CGTGGCACTC
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
29 1 0.01
30 23 0.34
31 24 0.35
32 17 0.25
33 3 0.04
ACGTcount: A:0.26, C:0.29, G:0.15, T:0.29
Consensus pattern (31 bp):
AAGTCCACGACTCAGTAGCATTTTGTCTTCA
Found at i:847068 original size:27 final size:28
Alignment explanation
Indices: 847038--847093 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
847028 CACTCTTTTT
*
847038 CCCTTCT-AAGTCCACAACTCCGTGGCA
1 CCCTTCTAAAGCCCACAACTCCGTGGCA
*
847065 CCCTTTTAAAGCCCACAACTCCGTGGCA
1 CCCTTCTAAAGCCCACAACTCCGTGGCA
847093 C
1 C
847094 TCTTTTTCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
27 6 0.23
28 20 0.77
ACGTcount: A:0.23, C:0.41, G:0.14, T:0.21
Consensus pattern (28 bp):
CCCTTCTAAAGCCCACAACTCCGTGGCA
Found at i:847169 original size:194 final size:186
Alignment explanation
Indices: 846978--847923 Score: 1186
Period size: 193 Copynumber: 4.9 Consensus size: 186
846968 TTTTTCTTCA
* * * *
846978 AAGTCCACGACTCAGTGGCATCCTT-TT-C-TTCAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAGTCCACGACCCCGTGGCA-CCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA-TCTTCTT--
* * * *
847040 CTTCTAAGTCCACAACTCCGTGGCACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCTTT
62 -TTCAAAGCCCACAACTCTGTGGCACCCTTTT-AAGTCCACAACTCCGTGGCAC-C----TC-TT
* *
847105 TTAAACCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTCTT
119 TTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTT
847170 TTT
184 TTT
847173 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
1 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
* *
847238 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACC-CTTTTAA
66 AAGCCCACAACTCTGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTTAA
847302 GCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
123 GCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
* *
847366 AAGTCCACGACCCCGTGGCACTTTGTTCCTTTCAAAGTCCACAACTCTGTGGCATCTTCTTTTCA
1 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
*
847431 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACC-CTTTTAA
66 AAGCCCACAACTCTGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTTAA
* *
847495 GCCCACAACTCCATGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTCTTTTT
123 GCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
*
847559 AAGTCCACGACCCCGTTGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
1 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
* *
847624 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTTCGTGGCACCT-TTTTGA
66 AAGCCCACAACTCTGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTT-A
847688 AGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
122 AGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
847753 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
1 AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
*
847818 AAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACC-CTTTTAA
66 AAGCCCACAACTCTGTGGCA--------CCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTTAA
* * * * *
847882 GTCTACAACTCTGTGGCATCTTTCTCCTTTTCAAAAGCCCAC
123 GCCCACAACTCCGTGGCACCTTT-TTCTTTTC-AAAGCCCAC
847924 ACAAGTCGAT
Statistics
Matches: 705, Mismatches: 30, Indels: 32
0.92 0.04 0.04
Matches are distributed among these distances:
193 420 0.60
194 200 0.28
195 29 0.04
196 7 0.01
197 23 0.03
199 1 0.00
200 18 0.03
201 7 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (186 bp):
AAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTTTCA
AAGCCCACAACTCTGTGGCACCCTTTTAAGTCCACAACTCCGTGGCACCTCTTTTAAGCCCACAA
CTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTTTTT
Found at i:847190 original size:66 final size:66
Alignment explanation
Indices: 846521--847924 Score: 955
Period size: 66 Copynumber: 21.7 Consensus size: 66
846511 TGTGGCACCA
* *
846521 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCTGTGGCACTCTTTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTT
*
846586 TCCC
64 T-CT
* * * *
846590 TTTTAAGTCCACAATTCTGT-GCGACCTTTTTCTTTTCAAAGCCCACCATTCCGTGGCACCTTTT
1 TTTTAAGTCCACAACTCCGTGGC-ACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
*
846654 CC
65 CT
* * * * * * **
846656 TTTTAAGTCCACGACAT-AGTGGCATC-TTGTC---TCAAAGTCCACGACTTAGTGGCATCCTTT
1 TTTTAAGTCCACAAC-TCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCA-CCTTT
846716 TC-
64 TCT
*** * * * * * *
846718 TGCAAAGCCCACAACTACGTGGCA-CTCTTTTC-CTTCTAAGTCCATAACTCTC-TGGCA-C---
1 TTTTAAGTCCACAACTCCGTGGCACCT-TTTTCTTTTCAAAGCCCACAACTC-CGTGGCACCTTT
*
846776 -CA
64 TCT
* * *
846778 TTTTAAG-CCTACAACTCTGTGGCACCTTTTTCGTTTCAAAGCCCACAACTCTGTGGCACTCTTT
1 TTTTAAGTCC-ACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TT
*
846842 TTCCC
63 TT-CT
* * * * *
846847 TTTTAAGTCCACAATTCCGTGGCACATTTTTCTTTTCAAAGCGCACCACTTCGTGGCACCTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
*
846912 C
66 T
* * * * * * **
846913 TTTTAAGTCCACGACAT-AGTAGCA--TTTTGTC---TCAAAGTCCACGACTCAGTGGCATTTTT
1 TTTTAAGTCCACAAC-TCCGTGGCACCTTTT-TCTTTTCAAAGCCCACAACTCCGTGGCACCTTT
846972 TC-
64 TCT
** * *
846974 TTCAAAGTCCACGACTCAGTGGCATCC-TTTTC--TTCAAAGCCCACAACTCCGTGGCACTCTTT
1 TTTTAAGTCCACAACTCCGTGGCA-CCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TT
*
847036 TTCCC
63 TT-CT
*
847041 TTCTAAGTCCACAACTCCGTGGCACC-----CTTTT-AAAGCCCACAACTCCGTGGCACTCTTTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCAC-C-TTT
847100 TCT
64 TCT
** * *
847103 TTTTAAACCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847168 T
66 T
* * * * * *
847169 TTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA--TCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847232 T
66 T
* * * * * *
847233 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--AAGTCCACAATTCCATGGCACC-
1 TTT-TAAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACCT
847295 ---C-
62 TTTCT
* *
847296 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847361 T
66 T
* * * * * *
847362 TTTTAAGTCCACGACCCCGTGGCA-CTTTGTTCCTTTCAAAGTCCACAACTCTGTGGCA--TCTT
1 TTTTAAGTCCACAACTCCGTGGCACCTTT-TTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTT
847424 CT
65 CT
* * * * *
847426 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--AAGTCCACAATTCCGTGGCACC-
1 TTT-TAAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACCT
847488 ---C-
62 TTTCT
* * * *
847489 TTTTAAGCCCACAACTCCATGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847554 T
66 T
* * * * * * *
847555 TTTTAAGTCCACGACCCCGTTGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA--TCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847618 T
66 T
* * * * * *
847619 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--AAGTCCACAATTTCGTGGCACC-
1 TTT-TAAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACCT
847681 --T-T
62 TTTCT
* * *
847683 TTTGAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847748 T
66 T
* * * * * *
847749 TTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCA--TCTTC
1 TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
847812 T
66 T
* * * * *
847813 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT--AAGTCCACAATTCCGTGGCACC-
1 TTT-TAAGTCCACAACTCCGTGGCAC-CTTTTT--CTTTTCAAAGCCCACAACTCCGTGGCACCT
847875 ---C-
62 TTTCT
* * * *
847876 TTTTAAGTCTACAACTCTGTGGCATCTTTCTCCTTTTCAAAAGCCCACA
1 TTTTAAGTCCACAACTCCGTGGCACCTTT-TTCTTTTC-AAAGCCCACA
847925 CAAGTCGATG
Statistics
Matches: 1069, Mismatches: 173, Indels: 192
0.75 0.12 0.13
Matches are distributed among these distances:
59 13 0.01
60 32 0.03
61 94 0.09
62 166 0.16
63 102 0.10
64 45 0.04
65 101 0.09
66 332 0.31
67 43 0.04
68 40 0.04
69 99 0.09
70 2 0.00
ACGTcount: A:0.20, C:0.33, G:0.13, T:0.33
Consensus pattern (66 bp):
TTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACAACTCCGTGGCACCTTTTC
T
Found at i:847307 original size:27 final size:27
Alignment explanation
Indices: 847266--847326 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
847256 CACTCTTTTT
* *
847266 CCCTTTTAAGTCCACAATTCCATGGCA
1 CCCTTTTAAGCCCACAACTCCATGGCA
*
847293 CCCTTTTAAGCCCACAACTCCGTGGCA
1 CCCTTTTAAGCCCACAACTCCATGGCA
*
847320 CCTTTTT
1 CCCTTTT
847327 CTTTTCAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.36, G:0.11, T:0.31
Consensus pattern (27 bp):
CCCTTTTAAGCCCACAACTCCATGGCA
Found at i:847309 original size:193 final size:193
Alignment explanation
Indices: 847103--847923 Score: 1480
Period size: 193 Copynumber: 4.2 Consensus size: 193
847093 CTCTTTTTCT
* *
847103 TTTTAAACCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTC
1 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
847168 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
66 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
*
847233 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACCC
131 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
847296 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
1 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
* *
847361 TTTTTAAGTCCACGACCCCGTGGCACTTTGTTCCTTTCAAAGTCCACAACTCTGTGGCATCTTCT
66 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
847426 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
131 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
* *
847489 TTTTAAGCCCACAACTCCATGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
1 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
*
847554 TTTTTAAGTCCACGACCCCGTTGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
66 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
* *
847619 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTTCGTGGCACCT
131 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
847682 TTTTGAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
1 TTTT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTT
847747 CTTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTC
65 CTTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTC
847812 TTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
130 TTTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
* * * * *
847876 TTTTAAGTCTACAACTCTGTGGCATCTTTCTCCTTTTCAAAAGCCCAC
1 TTTTAAGCCCACAACTCCGTGGCACCTTT-TTCTTTTC-AAAGCCCAC
847924 ACAAGTCGAT
Statistics
Matches: 603, Mismatches: 22, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
193 399 0.66
194 195 0.32
195 9 0.01
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (193 bp):
TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTC
TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
Found at i:847500 original size:27 final size:27
Alignment explanation
Indices: 847459--847519 Score: 86
Period size: 27 Copynumber: 2.3 Consensus size: 27
847449 CACTCTTTTT
* * *
847459 CCCTTTTAAGTCCACAATTCCGTGGCA
1 CCCTTTTAAGCCCACAACTCCATGGCA
847486 CCCTTTTAAGCCCACAACTCCATGGCA
1 CCCTTTTAAGCCCACAACTCCATGGCA
*
847513 CCTTTTT
1 CCCTTTT
847520 CTTTTCAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.21, C:0.36, G:0.11, T:0.31
Consensus pattern (27 bp):
CCCTTTTAAGCCCACAACTCCATGGCA
Found at i:847866 original size:387 final size:386
Alignment explanation
Indices: 847103--847923 Score: 1480
Period size: 387 Copynumber: 2.1 Consensus size: 386
847093 CTCTTTTTCT
* **
847103 TTTTAAACCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCTGTGGCACCTTTTC
1 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
847168 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
66 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
847233 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACCCTT
131 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACCCTT
847298 TTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTT
196 TTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTT
* *
847363 TTTAAGTCCACGACCCCGTGGCACTTTGTTCCTTTCAAAGTCCACAACTCTGTGGCATCTTCTTT
261 TTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTT
847428 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
326 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
*
847489 TTTTAAGCCCACAACTCCATGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
1 TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
*
847554 TTTTTAAGTCCACGACCCCGTTGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
66 TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
* * *
847619 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTTCGTGGCACCTTT
131 TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACCCTT
847684 TTGAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCT
196 TT-AAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCT
847749 TTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTT
260 TTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTT
847814 TTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
325 TTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
* * * * *
847876 TTTTAAGTCTACAACTCTGTGGCATCTTTCTCCTTTTCAAAAGCCCAC
1 TTTTAAGCCCACAACTCCGTGGCACCTTT-TTCTTTTC-AAAGCCCAC
847924 ACAAGTCGAT
Statistics
Matches: 416, Mismatches: 16, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
386 189 0.45
387 211 0.51
388 7 0.02
389 9 0.02
ACGTcount: A:0.20, C:0.34, G:0.13, T:0.33
Consensus pattern (386 bp):
TTTTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCATGGCACCTTTTC
TTTTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCT
TTTCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCATGGCACCCTT
TTAAGCCCACAACTCCGTGGCACCTTTTTCTTTTCAAAGCCCACCACTCCGTGGCACCTTTTCTT
TTTAAGTCCACGACCCCGTGGCACCTTGTTCCTTTCAAAGTCCACAACTCCGTGGCATCTTCTTT
TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAGTCCACAATTCCGTGGCACCC
Found at i:847884 original size:27 final size:27
Alignment explanation
Indices: 847846--847899 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
847836 CACTCTTTTT
*
847846 CCCTTTTAAGTCCACAATTCCGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
* *
847873 CCCTTTTAAGTCTACAACTCTGTGGCA
1 CCCTTTTAAGTCCACAACTCCGTGGCA
847900 TCTTTCTCCT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.22, C:0.31, G:0.15, T:0.31
Consensus pattern (27 bp):
CCCTTTTAAGTCCACAACTCCGTGGCA
Found at i:847957 original size:33 final size:33
Alignment explanation
Indices: 847915--848205 Score: 439
Period size: 33 Copynumber: 8.9 Consensus size: 33
847905 CTCCTTTTCA
* *
847915 AAAGCCCACACAAGTCGATGGCAACCCTTCTCC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
847948 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* *
847981 AAAGCCCACACAAGTCGGTGGCAACCC-CCTCA
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
* * *
848013 AAAACCCACACAAGTCAGTGGCAACCCTTCTCC
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
848046 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
*
848079 AAAGCCCACACAAGTCGGTGGCAACCC-CCTC-
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
848110 AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTC-TCT
*
848143 AAAGCCCACACAAGTCGGTGGCAATCC-TCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
848175 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTTCT
848206 AAGCCCAATA
Statistics
Matches: 234, Mismatches: 18, Indels: 12
0.89 0.07 0.05
Matches are distributed among these distances:
30 2 0.01
31 25 0.11
32 60 0.26
33 145 0.62
34 2 0.01
ACGTcount: A:0.29, C:0.37, G:0.18, T:0.16
Consensus pattern (33 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTTCTCT
Found at i:848014 original size:98 final size:98
Alignment explanation
Indices: 847912--848201 Score: 489
Period size: 98 Copynumber: 3.0 Consensus size: 98
847902 TTTCTCCTTT
847912 TCAAAAGCCCACACAAGTCGATGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTT
1 TCAAAAGCCCACACAAGTCGATGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTT
847977 TTCTAAAGCCCACACAAGTCGGTGGCAACCCCC
66 TTCTAAAGCCCACACAAGTCGGTGGCAACCCCC
*
848010 TCAAAAACCCACACAAGTC-AGTGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCT
1 TCAAAAGCCCACACAAGTCGA-TGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCT
848074 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCCC
65 TTTCTAAAGCCCACACAAGTCGGTGGCAACCCCC
* * *
848108 TC-AAAGCCCACACAAGTCGGTGGCAA-CCTTCTTCTAAAGCCCACACAAGTCGGTGGCAATCC-
1 TCAAAAGCCCACACAAGTCGATGGCAACCCTTC-TCCAAAGCCCACACAAGTCGGTGGCAACCCT
*
848170 TCTCTAAAGCCCACACAAGTCGGTGGCAACCC
65 TTTCTAAAGCCCACACAAGTCGGTGGCAACCC
848202 TTCTAAGCCC
Statistics
Matches: 183, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
96 36 0.20
97 50 0.27
98 97 0.53
ACGTcount: A:0.30, C:0.37, G:0.18, T:0.16
Consensus pattern (98 bp):
TCAAAAGCCCACACAAGTCGATGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTT
TTCTAAAGCCCACACAAGTCGGTGGCAACCCCC
Found at i:848050 original size:65 final size:65
Alignment explanation
Indices: 847915--848202 Score: 409
Period size: 65 Copynumber: 4.4 Consensus size: 65
847905 CTCCTTTTCA
* * * *
847915 AAAGCCCACACAAGTCGATGGCAACCCTTCTCCAAAGCCCACACAAGTCGGTGGCAACCCTTTTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTCCTCTAAAGCCCACACAAGTCGGTGGCAACCC-TCTC
*
847980 T
65 C
* * *
847981 AAAGCCCACACAAGTCGGTGGCAACCC-CCTCAAAAACCCACACAAGTCAGTGGCAACCCTTCTC
1 AAAGCCCACACAAGTCGGTGGCAACCCTCCTCTAAAGCCCACACAAGTCGGTGGCAACCC-TCTC
848045 C
65 C
** *
848046 AAAGCCCACACAAGTCGGTGGCAACCCTTTTCTAAAGCCCACACAAGTCGGTGGCAACCCCCT-C
1 AAAGCCCACACAAGTCGGTGGCAACCCTCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCC
* * * *
848110 AAAGCCCACACAAGTCGGTGGCAACCTTCTTCTAAAGCCCACACAAGTCGGTGGCAATCCTCTCT
1 AAAGCCCACACAAGTCGGTGGCAACCCTCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCC
848175 AAAGCCCACACAAGTCGGTGGCAACCCT
1 AAAGCCCACACAAGTCGGTGGCAACCCT
848203 TCTAAGCCCA
Statistics
Matches: 201, Mismatches: 19, Indels: 5
0.89 0.08 0.02
Matches are distributed among these distances:
64 60 0.30
65 88 0.44
66 53 0.26
ACGTcount: A:0.30, C:0.37, G:0.18, T:0.16
Consensus pattern (65 bp):
AAAGCCCACACAAGTCGGTGGCAACCCTCCTCTAAAGCCCACACAAGTCGGTGGCAACCCTCTCC
Found at i:848318 original size:43 final size:43
Alignment explanation
Indices: 848200--848771 Score: 388
Period size: 43 Copynumber: 12.1 Consensus size: 43
848190 CGGTGGCAAC
* * * *
848200 CCTTCTAAGCCCAATATTGCTGGCCTTGAATCAGTATATTGGCA
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* *
848244 TCTTCTTCTTTAAGTCCAATATAGCTAGCCTTGAATCAGAACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* * * **
848293 CCTTTAAGCCCAATATTGCTGGCCTTGAATCAACGTATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
*
848336 TCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* * **
848385 CCTTTAAATCCAATATCGCTGGCCTTGAATCAGCGTATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
**
848428 CCTTCATCTTTAAGTCCAACGTAGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
*
848477 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* * *
848520 CCTTCTTCTTTAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 ----C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
* *
848569 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT---G-----G-CA
* * *
848621 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT---G-----G-CA
* * *
848673 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT-G-G-C---A
* *
848722 TCATCTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
1 -C--CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
848768 CCTT
1 CCTT
848772 CATCTTTAAC
Statistics
Matches: 444, Mismatches: 45, Indels: 75
0.79 0.08 0.13
Matches are distributed among these distances:
43 149 0.34
45 5 0.01
46 5 0.01
47 3 0.01
48 1 0.00
49 146 0.33
50 5 0.01
51 2 0.00
52 128 0.29
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (43 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA
Found at i:848353 original size:92 final size:92
Alignment explanation
Indices: 848200--848771 Score: 739
Period size: 92 Copynumber: 6.0 Consensus size: 92
848190 CGGTGGCAAC
* * * * *
848200 CCTTCTAAGCCCAATATTGCTGGCCTTGAATCAGTATATTGGCATCTTCTTCTTTAAGTCCAATA
1 CCTT-TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATG
* *
848265 TAGCTAGCCTTGAATCAGAACATTGGCA
65 TAGCTGGCCTTGAATCAGCACATTGGCA
* * * * *
848293 CCTTTAAGCCCAATATTGCTGGCCTTGAATCAACGTATTGGCATCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
848358 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
848385 CCTTTAAATCCAATATCGCTGGCCTTGAATCAGCGTATTGGCACCTTCATCTTTAAGTCCAACGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
848450 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* * * *
848477 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGCCCAATGT
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
*
848542 CGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
848569 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCATCTTTAAGTCCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATT-G-GCATCT-TCATCTTTAAGTCCAA
* * *
848634 TATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCA
63 TGTAGCTGGCCTTGAATCAGCACATT---G-----G-CA
* *
848673 TCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTATCATCTTTAAGTCCAA
1 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATC--T-TCATCTTTAAGTCCAA
*
848738 TGTCGCTGGCCTTGAATCAGCACATTGGCA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
848768 CCTT
1 CCTT
848772 CATCTTTAAC
Statistics
Matches: 430, Mismatches: 35, Indels: 26
0.88 0.07 0.05
Matches are distributed among these distances:
92 290 0.67
93 5 0.01
94 3 0.01
95 43 0.10
96 1 0.00
98 1 0.00
101 1 0.00
102 3 0.01
103 2 0.00
104 81 0.19
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:848648 original size:52 final size:52
Alignment explanation
Indices: 848570--848771 Score: 359
Period size: 52 Copynumber: 3.9 Consensus size: 52
848560 ACATTGGCAC
848570 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
848622 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* *
848674 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGTCTTTATCAT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
* * *
848726 CTTTAAGTCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTT
1 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTT
848772 CATCTTTAAC
Statistics
Matches: 144, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 144 1.00
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (52 bp):
CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCGCCTTTGTCAT
Found at i:849764 original size:32 final size:33
Alignment explanation
Indices: 849703--849768 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 33
849693 TTCAACGATT
849703 TGTATCGATACATAAAGTATTGTACCGATACAA
1 TGTATCGATACATAAAGTATTGTACCGATACAA
* *
849736 TGTATCGATACAT-AAGTTTTGTATCGATACAA
1 TGTATCGATACATAAAGTATTGTACCGATACAA
849768 T
1 T
849769 TTAAGCTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
32 18 0.58
33 13 0.42
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (33 bp):
TGTATCGATACATAAAGTATTGTACCGATACAA
Found at i:849827 original size:13 final size:13
Alignment explanation
Indices: 849809--849833 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
849799 ATTACTCAAA
849809 TGTATCGATACAT
1 TGTATCGATACAT
849822 TGTATCGATACA
1 TGTATCGATACA
849834 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:850102 original size:20 final size:19
Alignment explanation
Indices: 850077--850167 Score: 78
Period size: 20 Copynumber: 4.6 Consensus size: 19
850067 TACCAGTTTC
850077 ATGTATCGATACAATTGTGT
1 ATGTATCGATACAA-TGTGT
***
850097 ATGTATCGATACAATGAAC
1 ATGTATCGATACAATGTGT
*
850116 ATGTATCGATACAAAGCATG-
1 ATGTATCGATACAATG--TGT
*
850136 ATGTATCGATAC-ATCTGGAT
1 ATGTATCGATACAATGT-G-T
850156 ATGTATCGATAC
1 ATGTATCGATAC
850168 TTTTAAGGGT
Statistics
Matches: 58, Mismatches: 8, Indels: 10
0.76 0.11 0.13
Matches are distributed among these distances:
17 1 0.02
18 1 0.02
19 18 0.31
20 38 0.66
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (19 bp):
ATGTATCGATACAATGTGT
Found at i:850140 original size:39 final size:40
Alignment explanation
Indices: 850076--850167 Score: 109
Period size: 39 Copynumber: 2.3 Consensus size: 40
850066 CTACCAGTTT
*
850076 CATGTATCGATACAATTGTGTATGTATCGATACA-ATGAA
1 CATGTATCGATACAATAGTGTATGTATCGATACATATGAA
* *
850115 CATGTATCGATACAA-AGCATG-ATGTATCGATACATCTGGA
1 CATGTATCGATACAATAG--TGTATGTATCGATACATATGAA
*
850155 TATGTATCGATAC
1 CATGTATCGATAC
850168 TTTTAAGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
38 1 0.02
39 28 0.61
40 17 0.37
ACGTcount: A:0.35, C:0.15, G:0.18, T:0.32
Consensus pattern (40 bp):
CATGTATCGATACAATAGTGTATGTATCGATACATATGAA
Found at i:851586 original size:20 final size:20
Alignment explanation
Indices: 851561--851614 Score: 90
Period size: 20 Copynumber: 2.7 Consensus size: 20
851551 TTTACCCAAA
*
851561 TGTATCGATACATTATTCAT
1 TGTATCGATACATTACTCAT
*
851581 TGTATCGATACATGACTCAT
1 TGTATCGATACATTACTCAT
851601 TGTATCGATACATT
1 TGTATCGATACATT
851615 GTATCGATAC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.41
Consensus pattern (20 bp):
TGTATCGATACATTACTCAT
Done.