genome.fa.s476.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold476
Parameters: 2 7 7 80 10 50 1000
Length:  196012

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4888--4939	27	1.9	27	84	7	70	26	21	9	42	1.83
9502--9535	2	17.0	2	100	0	68	50	0	0	50	1.00
11116--11140	2	12.5	2	100	0	50	48	0	0	52	1.00
14408--14453	21	2.1	22	84	4	58	19	30	19	30	1.97
19163--19192	2	15.0	2	100	0	60	50	0	0	50	1.00
28612--28684	2	36.5	2	100	0	146	49	0	0	50	1.00
29754--29796	2	22.5	2	86	9	63	53	0	2	44	1.13
31447--31517	20	3.5	20	74	0	70	35	11	11	42	1.77
31486--31523	20	1.9	20	94	0	67	34	13	7	44	1.72
34789--34831	18	2.3	19	84	15	54	55	2	0	41	1.12
35047--35071	13	1.9	13	100	0	50	24	32	20	24	1.98
39764--39792	15	1.9	15	100	0	58	41	0	34	24	1.55
43380--43428	25	1.9	25	83	4	62	55	6	0	38	1.25
44942--45010	36	1.9	36	81	0	84	50	2	2	43	1.32
46522--46547	2	13.0	2	100	0	52	50	0	0	50	1.00
47527--47571	22	2.0	22	100	0	90	35	17	8	37	1.81
54313--54367	28	2.0	28	92	0	92	50	20	10	18	1.76
56270--56315	21	2.1	22	88	4	67	19	28	19	32	1.96
58909--58963	28	2.0	28	92	0	92	50	20	10	18	1.76
60418--60447	15	1.9	16	93	6	53	76	3	13	6	1.11
62815--62865	15	3.4	15	76	23	54	58	5	0	35	1.22
63639--63672	18	1.9	18	88	5	52	35	2	8	52	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63803--63835	14	2.4	14	90	10	50	0	15	0	84	0.61
63805--63838	12	2.9	11	87	12	50	0	14	0	85	0.60
66546--66686	34	4.4	34	83	15	210	41	36	0	21	1.54
66585--66643	25	2.4	25	94	0	109	40	35	0	23	1.55
66551--66678	59	2.2	59	97	0	247	40	36	0	22	1.54
71362--71502	34	4.4	34	83	15	210	41	36	0	21	1.54
71401--71459	25	2.4	25	94	0	109	40	35	0	23	1.55
71367--71494	59	2.2	59	97	0	247	40	36	0	22	1.54
72941--72989	15	3.3	15	76	23	50	59	4	0	36	1.17
73107--73160	2	27.0	2	100	0	108	50	0	0	50	1.00
73884--73934	25	2.0	25	100	0	102	23	41	7	27	1.82
84515--84556	19	2.3	18	80	15	50	38	9	4	47	1.57
85400--85444	21	2.2	21	88	11	67	24	17	0	57	1.40
90499--90536	19	2.0	19	85	10	51	55	2	0	42	1.14
92013--92065	16	3.3	16	79	10	63	52	0	0	47	1.00
92327--92441	38	2.9	39	96	3	214	47	7	2	41	1.46
92610--92656	23	2.0	23	84	8	60	63	12	6	17	1.48
93142--93230	37	2.5	33	80	12	90	64	2	2	31	1.18
93247--93294	14	3.2	15	82	8	62	0	25	0	75	0.81
93246--93299	19	2.6	22	85	8	69	0	24	0	75	0.80
93750--93826	14	5.3	15	75	20	74	0	19	0	80	0.71
92872--94351	523	2.9	513	83	8	1840	45	10	7	36	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94282--94346	15	4.6	14	76	12	71	3	20	0	76	0.91
94288--94352	4	16.8	4	76	6	62	3	20	0	76	0.91
94276--94353	8	9.5	8	70	19	54	2	17	0	79	0.84
95847--95903	20	2.8	21	86	2	80	38	15	14	31	1.87
95980--96004	13	1.9	13	100	0	50	36	16	16	32	1.90
95964--96025	33	1.9	32	90	3	97	40	17	14	27	1.89
96667--96708	21	2.0	22	95	4	77	33	28	0	38	1.58
103677--103734	13	4.0	13	74	23	53	34	15	15	34	1.89
103691--103754	19	3.7	18	74	23	66	37	15	12	34	1.85
103678--103753	32	2.4	32	93	0	125	35	15	14	34	1.88
103742--103782	21	1.9	22	90	5	66	31	7	14	46	1.72
107028--107064	3	12.3	3	88	0	56	29	29	0	40	1.57
108633--108689	20	2.8	20	86	7	80	35	15	17	31	1.92
109255--109285	16	1.9	16	93	0	53	19	16	16	48	1.81
112685--112821	72	1.9	72	95	0	247	27	25	21	25	1.99
114697--114736	17	2.5	16	80	11	55	40	0	2	57	1.12
117100--117171	6	11.7	6	73	24	53	45	0	1	52	1.09
117489--117528	20	2.0	20	85	5	53	22	22	0	55	1.44
118384--118445	25	2.4	27	78	13	76	45	1	3	50	1.27
118786--118905	40	2.8	44	85	10	185	39	16	20	23	1.92
119279--119331	27	2.0	27	96	0	97	35	11	7	45	1.69
122225--122344	40	2.9	42	85	7	163	40	15	20	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122718--122770	27	2.0	27	96	0	97	35	11	7	45	1.69
124465--124512	21	2.2	22	78	10	55	43	0	0	56	0.99
125142--125172	7	4.4	7	91	0	53	29	0	38	32	1.57
125787--125971	50	3.7	50	94	0	325	27	22	18	31	1.97
130351--130555	50	4.1	50	89	1	295	31	20	17	30	1.96
134027--134090	32	2.0	32	93	6	112	40	15	6	37	1.73
139081--139134	11	5.0	11	76	13	58	40	1	7	50	1.41
139960--140005	17	2.7	17	82	0	56	26	0	6	67	1.15
139978--140018	19	2.3	17	87	8	55	26	0	4	68	1.10
139963--140048	44	2.0	44	81	9	104	29	1	4	65	1.20
143106--143142	18	2.0	20	89	10	60	13	10	10	64	1.49
143952--143982	2	15.5	2	100	0	62	51	0	0	48	1.00
145623--145659	2	18.5	2	100	0	74	48	0	0	51	1.00
147684--147708	2	12.5	2	100	0	50	52	0	0	48	1.00
148280--148321	20	2.1	20	86	0	57	50	9	7	33	1.62
152288--152315	2	14.0	2	100	0	56	50	0	0	50	1.00
154872--154916	2	22.5	2	86	0	63	51	0	2	46	1.13
155193--155217	2	12.5	2	100	0	50	48	0	0	52	1.00
157930--157973	20	2.2	20	83	0	52	65	6	4	22	1.35
158913--158952	2	20.0	2	100	0	80	50	0	0	50	1.00
159341--159599	129	2.0	129	93	0	437	33	18	11	37	1.86
159600--159626	13	2.1	13	100	0	54	25	22	14	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159909--159983	20	3.8	20	80	0	96	33	13	12	41	1.81
159909--159986	40	2.0	39	89	2	120	33	12	12	41	1.82
173984--174045	10	5.9	10	86	7	79	88	9	1	0	0.58
173983--174057	11	6.5	11	82	11	89	86	9	2	1	0.72
173984--174056	21	3.3	22	88	9	89	86	9	2	1	0.73
173983--174057	34	2.2	35	87	2	107	86	9	2	1	0.72
173983--174033	1	51.0	1	84	0	66	92	7	0	0	0.40
175269--176243	57	17.0	58	90	3	1433	28	31	17	22	1.97
175269--176243	142	6.8	143	90	2	1444	28	31	17	22	1.97
175267--176243	199	4.9	199	91	3	1489	28	31	17	22	1.97
176321--176433	49	2.4	45	82	8	136	23	23	20	32	1.98
176809--176883	20	3.8	20	80	0	96	33	13	12	41	1.81
176809--176886	40	2.0	39	89	2	120	33	12	12	41	1.82
181783--181821	19	2.1	19	95	0	69	28	5	30	35	1.79
183295--183321	2	13.5	2	100	0	54	48	0	0	51	1.00
184106--184151	21	2.1	22	84	11	60	6	15	0	78	0.95
184820--184860	21	2.0	21	85	9	57	41	4	4	48	1.46
185595--185641	24	2.0	24	86	0	67	31	14	25	27	1.95
186786--186814	2	14.5	2	100	0	58	51	0	0	48	1.00
187008--187402	131	3.2	123	79	12	428	53	2	1	42	1.23
187050--187425	131	2.9	130	87	7	552	52	2	2	42	1.28
187253--187283	15	2.0	16	93	6	55	64	0	3	32	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
190602--190639	19	2.0	20	84	5	51	34	2	2	60	1.24
192156--192208	17	3.2	17	72	2	54	49	11	7	32	1.67
192156--192209	16	3.3	16	76	5	54	48	11	7	33	1.67

Tables:   1

The End!