Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold479
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1265690
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
File 7 of 9
Found at i:901152 original size:17 final size:16
Alignment explanation
Indices: 901105--901154 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
901095 AAGCATGAAG
**
901105 TAAAAAAAAGTGAAAA
1 TAAAAAAAAGCAAAAA
*
901121 TAGAAAAAAGACAAAAA
1 TAAAAAAAAG-CAAAAA
901138 TAAAAAAAAAGCAAAAA
1 T-AAAAAAAAGCAAAAA
901155 AAATGAGGAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
16 9 0.32
17 11 0.39
18 8 0.29
ACGTcount: A:0.78, C:0.04, G:0.10, T:0.08
Consensus pattern (16 bp):
TAAAAAAAAGCAAAAA
Found at i:901438 original size:21 final size:22
Alignment explanation
Indices: 901412--901454 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
901402 AGCATAATGA
901412 AAAAAAAAGAAAAGAA-AAAGC
1 AAAAAAAAGAAAAGAATAAAGC
* *
901433 AAAAAAATGGAAAGAATAAAGC
1 AAAAAAAAGAAAAGAATAAAGC
901455 TCTAAGGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.74, C:0.05, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAAAGAAAAGAATAAAGC
Found at i:901445 original size:22 final size:22
Alignment explanation
Indices: 901411--901454 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
901401 GAGCATAATG
901411 AAAAAAAAAGAAAAGAA-AAAGC
1 AAAAAAAAAG-AAAGAATAAAGC
**
901433 AAAAAAATGGAAAGAATAAAGC
1 AAAAAAAAAGAAAGAATAAAGC
901455 TCTAAGGTGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.75, C:0.05, G:0.16, T:0.05
Consensus pattern (22 bp):
AAAAAAAAAGAAAGAATAAAGC
Found at i:901871 original size:111 final size:111
Alignment explanation
Indices: 901715--902034 Score: 408
Period size: 112 Copynumber: 2.9 Consensus size: 111
901705 ACTGACATCT
* *
901715 AGTTTGTCTGATTTTTGAAGAAATTCATATTTTATGCATTTCGATCCATTAATGCCTAGGAAAAT
1 AGTTTGT-TGATTTTT-AAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAAT
* * * * * *
901780 GGGGTACGTATCTTATAAGTTTTGAAAATTTTGAGCCTAACAACATTCA
64 GGGGCACGCATCCTATAAGTTTTGAAAATTTTGAGCCCAACAA-AATAA
* * * *
901829 AGTTTGTT-ATTTTTTAGAAATTCATGTTTTATACATTCCGATCCATTCATGCCTAGGAAAATAG
1 AGTTTGTTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGG
* * *
901893 GGCATGCATCCTATGAGTTTTGAAAATTTTGAGCCCCACAAAATAA
66 GGCACGCATCCTATAAGTTTTGAAAATTTTGAGCCCAACAAAATAA
* *
901939 AATTTGTTTGATTTTTAAGAAATTCATATTTTATATATTTCGATCCATTCATGCCTAGGAAAATG
1 AGTTTG-TTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATG
* * * *
902004 GGGCATGCACCCTATTAGTTTTGAAATTTTT
65 GGGCACGCATCCTATAAGTTTTGAAAATTTT
902035 AGGCCCACTA
Statistics
Matches: 180, Mismatches: 24, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
110 8 0.04
111 80 0.44
112 84 0.47
113 1 0.01
114 7 0.04
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.39
Consensus pattern (111 bp):
AGTTTGTTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGG
GGCACGCATCCTATAAGTTTTGAAAATTTTGAGCCCAACAAAATAA
Found at i:901995 original size:112 final size:113
Alignment explanation
Indices: 901717--902042 Score: 417
Period size: 111 Copynumber: 2.9 Consensus size: 113
901707 TGACATCTAG
* * *
901717 TTTGTCTGATTTTTGAAGAAATTCATATTTTATGCATTTCGATCCATTAATGCCTAGGAAAATGG
1 TTTGTTTGATTTTT-AAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGG
* * * * ** * * *
901782 GGTACGTATCTTATAAGTTTTGAAAATTTTGAGCCTAACAACATTCAAG
65 GGCATGCATCCTATAAGTTTTGAAAATTTTGAGCCCCACAACAATAAAA
* * * *
901831 TTTG-TT-ATTTTTTAGAAATTCATGTTTTATACATTCCGATCCATTCATGCCTAGGAAAATAGG
1 TTTGTTTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGGG
*
901894 GCATGCATCCTATGAGTTTTGAAAATTTTGAGCCCCACAA-AATAAAA
66 GCATGCATCCTATAAGTTTTGAAAATTTTGAGCCCCACAACAATAAAA
*
901941 TTTGTTTGATTTTTAAGAAATTCATATTTTATATATTTCGATCCATTCATGCCTAGGAAAATGGG
1 TTTGTTTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGGG
* * * *
902006 GCATGCACCCTATTAGTTTTG-AAATTTTTAGGCCCAC
66 GCATGCATCCTATAAGTTTTGAAAATTTTGAGCCCCAC
902043 TAAAGTCTCC
Statistics
Matches: 184, Mismatches: 26, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
110 8 0.04
111 94 0.51
112 77 0.42
113 1 0.01
114 4 0.02
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.39
Consensus pattern (113 bp):
TTTGTTTGATTTTTAAGAAATTCATATTTTATACATTTCGATCCATTCATGCCTAGGAAAATGGG
GCATGCATCCTATAAGTTTTGAAAATTTTGAGCCCCACAACAATAAAA
Found at i:902509 original size:66 final size:66
Alignment explanation
Indices: 902431--902595 Score: 192
Period size: 66 Copynumber: 2.5 Consensus size: 66
902421 GTCTTCACCA
* * * *
902431 TTAG-AAAAGGGTTGCCA-CTAATTTGTGTGGGCTTTTGAAAGGGCTGCCACCGACTTGTGTGGG
1 TTAGAAAAAGGGTTACCATC-AACTTATGTGGGCTTTTGAAAGGGCTGCCACCGACTTGTATGGG
902494 CT
65 CT
* * * *
902496 TTAGAAAAAGGGTTACCATCGACTTATGTGGGCTTTTGAAAGGGTTGTCATCGACTTGTATGGGC
1 TTAGAAAAAGGGTTACCATCAACTTATGTGGGCTTTTGAAAGGGCTGCCACCGACTTGTATGGGC
902561 T
66 T
* * * *
902562 TT-TAAAAAGGGTTCCCATCGACTTGTGTGGGCTT
1 TTAGAAAAAGGGTTACCATCAACTTATGTGGGCTT
902596 AAAAAGGTGC
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 33 0.38
66 53 0.61
67 1 0.01
ACGTcount: A:0.22, C:0.16, G:0.30, T:0.33
Consensus pattern (66 bp):
TTAGAAAAAGGGTTACCATCAACTTATGTGGGCTTTTGAAAGGGCTGCCACCGACTTGTATGGGC
T
Found at i:902581 original size:33 final size:33
Alignment explanation
Indices: 902435--902602 Score: 175
Period size: 32 Copynumber: 5.2 Consensus size: 33
902425 TCACCATTAG
* *
902435 AAAAGGGTTGCCA-CTAATTTGTGTGGGCTTTT-
1 AAAAGGGTTGCCATC-GACTTGTGTGGGCTTTTA
* * * *
902467 GAAAGGGCTGCCACCGACTTGTGTGGGCTTTAGA
1 AAAAGGGTTGCCATCGACTTGTGTGGGCTTT-TA
* *
902501 AAAAGGGTTACCATCGACTTATGTGGGCTTTT-
1 AAAAGGGTTGCCATCGACTTGTGTGGGCTTTTA
* * *
902533 GAAAGGGTTGTCATCGACTTGTATGGGCTTTTA
1 AAAAGGGTTGCCATCGACTTGTGTGGGCTTTTA
*
902566 AAAAGGGTTCCCATCGACTTGTGTGGGC--TTA
1 AAAAGGGTTGCCATCGACTTGTGTGGGCTTTTA
902597 AAAAGG
1 AAAAGG
902603 TGCCACGAAG
Statistics
Matches: 112, Mismatches: 20, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
31 9 0.08
32 52 0.46
33 25 0.22
34 26 0.23
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (33 bp):
AAAAGGGTTGCCATCGACTTGTGTGGGCTTTTA
Found at i:902642 original size:28 final size:28
Alignment explanation
Indices: 902587--902659 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
902577 CATCGACTTG
*
902587 TGTGGGCTTAAAAA-GGTGCCACGAAGT
1 TGTGGACTTAAAAAGGGTGCCACGAAGT
* *
902614 TGTGGACTTAAAAAGGGTGCCGCGGAGT
1 TGTGGACTTAAAAAGGGTGCCACGAAGT
902642 TGTGGACTTTAAAAAGGG
1 TGTGGAC-TTAAAAAGGG
902660 GTGCTACAGA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
27 13 0.32
28 18 0.44
29 10 0.24
ACGTcount: A:0.29, C:0.12, G:0.36, T:0.23
Consensus pattern (28 bp):
TGTGGACTTAAAAAGGGTGCCACGAAGT
Found at i:902672 original size:30 final size:29
Alignment explanation
Indices: 902594--902684 Score: 107
Period size: 30 Copynumber: 3.2 Consensus size: 29
902584 TTGTGTGGGC
902594 TTAAAAA-GGTGCCAC-GAAGTTGTGGAC-
1 TTAAAAAGGGTGCCACAG-AGTTGTGGACT
* *
902621 TTAAAAAGGGTGCCGCGGAGTTGTGGACT
1 TTAAAAAGGGTGCCACAGAGTTGTGGACT
* *
902650 TTAAAAAGGGGTGCTACAGAGTTATGGACT
1 TTAAAAA-GGGTGCCACAGAGTTGTGGACT
902680 TTAAA
1 TTAAA
902685 GAAAAAGGTG
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
27 7 0.13
28 17 0.31
29 8 0.15
30 23 0.42
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.25
Consensus pattern (29 bp):
TTAAAAAGGGTGCCACAGAGTTGTGGACT
Found at i:902805 original size:32 final size:32
Alignment explanation
Indices: 902733--902853 Score: 125
Period size: 32 Copynumber: 3.7 Consensus size: 32
902723 AATGTCCCAC
* *
902733 TGCCACCGACTTGTGCGGGCTTTAGAAAAAGGGT
1 TGCCATCGACTTGTGCGGGCTTTTG--AAAGGGT
* * *
902767 TACCATCGACTTATGTGGGCTTTTGAAAGGGT
1 TGCCATCGACTTGTGCGGGCTTTTGAAAGGGT
** *
902799 TGCCATCGACTTGTATGGGCTTTTAACAAGGGT
1 TGCCATCGACTTGTGCGGGCTTTTGA-AAGGGT
* *
902832 TCCCTTCGACTTGTGCGGGCTT
1 TGCCATCGACTTGTGCGGGCTT
902854 AAAAAGGTGC
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
32 29 0.40
33 24 0.33
34 20 0.27
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (32 bp):
TGCCATCGACTTGTGCGGGCTTTTGAAAGGGT
Found at i:902987 original size:62 final size:58
Alignment explanation
Indices: 902854--902988 Score: 155
Period size: 62 Copynumber: 2.2 Consensus size: 58
902844 GTGCGGGCTT
* *
902854 AAAAAGGTGCCACGAAGTTGTGGACTTAAAAAGGGTGTCGTGGAGTTGTGAACTTAAAA
1 AAAAAGGTGCCACGAAGTTGTGGACTTAAAAAGGGTGTCG-AGAGTTATGAACTTAAAA
* * *
902913 AAAAAGGATGCCACTAAGTTGTGGACTTTAAAAAGGGGTGCTAC-AGAGTTATGGACTTTAAAG
1 AAAAAGG-TGCCACGAAGTTGTGGAC-TTAAAAA-GGGTG-T-CGAGAGTTATGAAC-TTAAAA
902976 AAAAAGGTGCCAC
1 AAAAAGGTGCCAC
902989 ACAGACTTAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
59 7 0.11
60 17 0.26
61 7 0.11
62 20 0.31
63 13 0.20
64 1 0.02
ACGTcount: A:0.37, C:0.12, G:0.28, T:0.23
Consensus pattern (58 bp):
AAAAAGGTGCCACGAAGTTGTGGACTTAAAAAGGGTGTCGAGAGTTATGAACTTAAAA
Found at i:903125 original size:30 final size:30
Alignment explanation
Indices: 902854--903308 Score: 285
Period size: 30 Copynumber: 14.7 Consensus size: 30
902844 GTGCGGGCTT
*
902854 AAAAA-GGTGCCACGAAGTTGTGGAC-TT-
1 AAAAAGGGTGCCACGGAGTTGTGGACTTTA
* ** * *
902881 AAAAAGGGTGTCGTGGAGTTGTGAACTTAAAA
1 AAAAAGGGTGCCACGGAGTTGTGGACTT--TA
* **
902913 AAAAAGGATGCCACTAAGTTGTGGACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTTA
* * * *
902943 AAAAGGGGTGCTACAGAGTTATGGACTTTAA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTT-A
* * * *
902974 AGAAAAAGGTGCCACACAGACTTATGGACTTTGA
1 A-AAAAGGGTG-C-CACGGAGTTGTGGACTTT-A
** * * *
903008 AGAAAAATGTCCCATGGAGTTGTGGATTTTTTTTAA
1 A-AAAAGGGTGCCACGGAGTTGTGGA----CTTT-A
* *
903044 AAAAAGAGGTGCCATGGAGTTGTAGACTTT-
1 AAAAAG-GGTGCCACGGAGTTGTGGACTTTA
* **
903074 ACAAA-GGTGCCACAAAGTTGTGGACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTTA
*
903103 AAAAAGGGTGTCACGGAGTTGTGGACTTTGA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTT-A
** *
903134 AAAAAAAGTGCCACGGGGTTGTGGACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTTA
* * *
903164 AAAAGGGGTGTCACAGAGTTGTGGACTTTGA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTT-A
*
903195 AAACAA-GGTGCCACGGGGTTGTGGACTTTGA
1 AAA-AAGGGTGCCACGGAGTTGTGGACTTT-A
* * *
903226 AGAAAAAGGTGCCACAGAGTTATGGACTTT-
1 A-AAAAGGGTGCCACGGAGTTGTGGACTTTA
** **
903256 AAAAAGGAGTGTAATAGAGTTGTGGACTTTA
1 AAAAAGG-GTGCCACGGAGTTGTGGACTTTA
* *
903287 AAAAGGGGTGCCACGAAGTTGT
1 AAAAAGGGTGCCACGGAGTTGT
903309 AGATTTGGAA
Statistics
Matches: 330, Mismatches: 75, Indels: 43
0.74 0.17 0.10
Matches are distributed among these distances:
27 5 0.02
28 34 0.10
29 10 0.03
30 101 0.31
31 63 0.19
32 64 0.19
33 2 0.01
34 26 0.08
35 4 0.01
36 21 0.06
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (30 bp):
AAAAAGGGTGCCACGGAGTTGTGGACTTTA
Found at i:903157 original size:61 final size:61
Alignment explanation
Indices: 903090--903308 Score: 253
Period size: 61 Copynumber: 3.6 Consensus size: 61
903080 GTGCCACAAA
* *
903090 GTTGTGGACTTTAAAAAAGGGTGTCACGGAGTTGTGGACTTTGAAAAAAAAGTGCCACGGG
1 GTTGTGGACTTTAAAAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAAAAAGTGCCACGGG
* * * *
903151 GTTGTGGACTTTAAAAAGGGGTGTCACAGAGTTGTGGACTTTGAAAACAAGGTGCCACGGG
1 GTTGTGGACTTTAAAAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAAAAAGTGCCACGGG
* * ** ** ** *
903212 GTTGTGGACTTTGAAGAAAAAGGTGCCACAGAGTTATGGACTTT-AAAAAGGAGTGTAATAGA
1 GTTGTGGACTTT-AA-AAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAAAAAGTGCCACGGG
*
903274 GTTGTGGACTTTAAAAAGGGGTGCCAC-GAAGTTGT
1 GTTGTGGACTTTAAAAAAGGGTGCCACAG-AGTTGT
903309 AGATTTGGAA
Statistics
Matches: 135, Mismatches: 20, Indels: 7
0.83 0.12 0.04
Matches are distributed among these distances:
59 1 0.01
60 16 0.12
61 71 0.53
62 23 0.17
63 24 0.18
ACGTcount: A:0.31, C:0.11, G:0.32, T:0.26
Consensus pattern (61 bp):
GTTGTGGACTTTAAAAAAGGGTGCCACAGAGTTGTGGACTTTGAAAAAAAAGTGCCACGGG
Found at i:904214 original size:32 final size:33
Alignment explanation
Indices: 904140--904225 Score: 111
Period size: 33 Copynumber: 2.6 Consensus size: 33
904130 GACAAGAAGG
* * *
904140 GTGATACGATTTGATTTATTTCTAACAGGAAAG
1 GTGATACGATTTGGTTTATTTCTAACAGAAAAA
*
904173 GTGATACGATTTGGTTTATTTCTGACA-AAAAA
1 GTGATACGATTTGGTTTATTTCTAACAGAAAAA
* *
904205 GTGATACGATTTAGTTCATTT
1 GTGATACGATTTGGTTTATTT
904226 TTAGCAAAAC
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
32 22 0.47
33 25 0.53
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (33 bp):
GTGATACGATTTGGTTTATTTCTAACAGAAAAA
Found at i:911753 original size:20 final size:21
Alignment explanation
Indices: 911704--911759 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
911694 TGCAGGGTAG
* *
911704 TTTTGTATCGATACATTTTAG
1 TTTTGTATCGATACATTTCAC
* *
911725 GTATGTATCGATACA-TTCAC
1 TTTTGTATCGATACATTTCAC
911745 TTTTGTATCGATACA
1 TTTTGTATCGATACA
911760 AATTGTAGAC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (21 bp):
TTTTGTATCGATACATTTCAC
Found at i:912878 original size:31 final size:31
Alignment explanation
Indices: 912797--913978 Score: 1004
Period size: 32 Copynumber: 37.1 Consensus size: 31
912787 AACGTTTGGC
*
912797 TTAGAAGAGTTGCCACCGAC-T-T-T-GGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* ** *
912824 TTAGAGAAAGGTTGCCACTAACTTATGTGGGCT
1 TT--AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
912857 TTAGAAGGATTGCCACCAACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
912888 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * *
912919 TTAGGAGGGTTGCCATCAACTTGTGTGGGCTT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGC-T
* **
912951 TTAGAGAAAGGTTGCCACCGACTTGTGTAAGCT
1 TT--AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
912984 TTAAAAGAAGTTGCCACCGACTTGTGTGGGCT
1 TTAGAAG-GGTTGCCACCGACTTGTGTGGGCT
* * * *
913016 TTTGAAGAAGTTGCCACCAACTTATGTGGGCTT
1 TTAGAAG-GGTTGCCACCGACTTGTGTGGGC-T
* ** *
913049 TTAGAGAAGGGGTGCCATTGACTTGTGTAGGCT
1 TT--AGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * *
913082 TTAAAAGCGTTGCCATCAACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
*
913113 TTGAGAAGGGTTACCACCGACTTGTGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
*
913145 TTAGAAAGGTTGCCACCGACTTGTGTGGGCTT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGC-T
**
913177 TTAGAGAAGGAG-TGCCACTAACTTGTGTGGGCT
1 TT--AGAAGG-GTTGCCACCGACTTGTGTGGGCT
* * *
913210 TTAGAAGGGTTACCATCGGCTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * *
913241 TTGAGAAGGGTTTCCA-CTAGCTTTTATGGGCT
1 TT-AGAAGGGTTGCCACCGA-CTTGTGTGGGCT
* * *
913273 TTGAGAAGGATTGCCACC-AGCTTGTATAGGCT
1 TT-AGAAGGGTTGCCACCGA-CTTGTGTGGGCT
* * * * *
913305 TTGAAAAGGATTGCCATCGGCTTATGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* * **
913337 TTGAGAGGGGTTACCATTGACTTGTGTGGGCTT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGC-T
* * *
913370 TTAGAGAAGGGGTGCCACCGACTTATGTGGGTT
1 TT--AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
913403 TTAGAAAGGTTGCCACCTACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
*
913434 TTAGAAGGGTTGCCATCGACTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * *
913465 TTGGAATGGTTGCCACTGGCTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* * * * *
913496 TTGAAAAGGGTTTCCACCTACTTTTTTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
913528 TTGAGAAAGGTTGCCACC-AGCTTATGTGGGCT
1 TT-AGAAGGGTTGCCACCGA-CTTGTGTGGGCT
* * *
913560 TTGAGAAGGGTCGCCATCGACTTATGTGGGCTT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGC-T
* *
913593 TTAGAGAATGGG-TGCCACTGACTTATGTGGGCT
1 TT--AGAA-GGGTTGCCACCGACTTGTGTGGGCT
* *
913626 TTAGAAGGGTTGCCACTGACTTGTGTAGGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
913657 TTAGAAGGGTTGCTATCGACTTGTGTGGGCTT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGC-T
* * *
913689 TTAGAAGGGTTGCCATCGACTTGTATGGGTTT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGG-CT
* ** *
913721 TTAGAGAAAGGG-TCCCACTAACTTGTGTGGCCT
1 TT--AG-AAGGGTTGCCACCGACTTGTGTGGGCT
** *
913754 TTAGAAGGGTTGCGGCCGACTTGTGTGAGCT
1 TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
*
913785 TTAGAAGGGTTGCCA-CTAGCTTGTGTGGGCT
1 TTAGAAGGGTTGCCACCGA-CTTGTGTGGGCT
* *
913816 TTAAGAAGGGCTGCCACCTACTTGTGTGGGCT
1 TT-AGAAGGGTTGCCACCGACTTGTGTGGGCT
* *
913848 TTAGAAGAGGTTGCCA-CTAGCTTATGTGGGCT
1 TTAGAAG-GGTTGCCACCGA-CTTGTGTGGGCT
*
913880 TTTGAGAGGGTTGCCACCGACTTGTGTGGGCT
1 TTAGA-AGGGTTGCCACCGACTTGTGTGGGCT
*
913912 TTGAGAAGAGGTTGCCACCGACTTATGTGGGCTT
1 TT-AGAAG-GGTTGCCACCGACTTGTGTGGGC-T
* *
913946 TTA-AGAGGGTTGCCACCGGCTTATGTGGGCT
1 TTAGA-AGGGTTGCCACCGACTTGTGTGGGCT
913977 TT
1 TT
913979 GATAGGAAAA
Statistics
Matches: 951, Mismatches: 155, Indels: 94
0.79 0.13 0.08
Matches are distributed among these distances:
27 2 0.00
29 14 0.01
30 12 0.01
31 344 0.36
32 374 0.39
33 69 0.07
34 123 0.13
35 13 0.01
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (31 bp):
TTAGAAGGGTTGCCACCGACTTGTGTGGGCT
Found at i:913203 original size:128 final size:128
Alignment explanation
Indices: 912820--913980 Score: 1113
Period size: 128 Copynumber: 9.1 Consensus size: 128
912810 CACCGACTTT
* * * *
912820 GGCTTTAGAGAAAGGTTGCCACTAACTTATGTGGGCTTT-AGAAGGATTGCCACCAACTTGTGTG
1 GGCTTT-GAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTG
* *
912884 GGCTTTAGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG-G-AGGGTTGCCATCAACTTGTGTG
65 GGCTTTAGAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTG
* ** * *
912946 GGCTTTTAGAGAAAGGTTGCCACCGACTTGTGTAAGCTTT-AAAAGAAGTTGCCACCGACTTGTG
1 GGC-TTT-GAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAG-GGTTGCCACCGACTTGTG
* * * * * *
913010 TGGGCTTTTGAAGAAGTTGCCACCAACTTATGTGGGCTTTTAGAGAAGGGGTGCCATTGACTTGT
63 TGGGCTTTAGAA-AGGTTGCCACCGACTTGTGTGGGC-TTTAGAGAAGGGTTGCCATCGACTTGT
*
913075 GTA
126 GTG
* *
913078 GGCTTT-A-AAAGCGTTGCCA-TCAACTTGTGTGGGCTTTGAGAAGGGTTACCACCGACTTGTGT
1 GGCTTTGAGAAAG-GTTGCCACT-GACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGT
*
913140 GGGCTTTAGAAAGGTTGCCACCGACTTGTGTGGGCTTTTAGAGAAGGAG-TGCCA-CTAACTTGT
64 GGGCTTTAGAAAGGTTGCCACCGACTTGTGTGGGC-TTTAGAGAAGG-GTTGCCATC-GACTTGT
913203 GTG
126 GTG
* * * * * * *
913206 GGCTTT-AGAAGGGTTACCA-TCGGCTTGTGTGGGCTTTGAGAAGGGTTTCCA-CTAGCTTTTAT
1 GGCTTTGAGAAAGGTTGCCACT-GACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGA-CTTGTGT
* * * * * *
913268 GGGCTTT-GAGAAGGATTGCCACC-AGCTTGTATAGGCTTT-GAAAAGGATTGCCATCGGCTTAT
64 GGGCTTTAGA-AAGG-TTGCCACCGA-CTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGT
913330 GTG
126 GTG
** * * * *
913333 GGCTTTGAGAGGGGTTACCATTGACTTGTGTGGGCTTTTAGAGAAGGGGTGCCACCGACTTATGT
1 GGCTTTGAGAAAGGTTGCCACTGACTTGTGTGGGC-TTT-GAGAAGGGTTGCCACCGACTTGTGT
* *
913398 GGGTTTTAGAAAGGTTGCCACCTACTTGTGTGGGCTTT--AGAAGGGTTGCCATCGACTTGTGTG
64 GGGCTTTAGAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTG
* * * * * * *
913461 GGCTTTG-GAATGGTTGCCACTGGCTTGTGTGGGCTTTGAAAAGGGTTTCCACCTACTTTTTTGG
1 GGCTTTGAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGG
* * *
913525 GCTTTGAGAAAGGTTGCCACC-AGCTTATGTGGGCTTT-GAGAAGGGTCGCCATCGACTTATGTG
66 GCTTT-AGAAAGGTTGCCACCGA-CTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTG
* * * *
913588 GGCTTTTAGAGAATGGGTGCCACTGACTTATGTGGGCTTT-AGAAGGGTTGCCACTGACTTGTGT
1 GGC-TTT-GAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGT
* * * * * *
913652 AGGCTTTAGAAGGGTTGCTATCGACTTGTGTGGGCTTT-TAGAAGGGTTGCCATCGACTTGTATG
64 GGGCTTTAGAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTG
* * * * * **
913716 GGTTTTTAGAGAAAGGGTCCCACTAACTTGTGTGGCCTTT-AGAAGGGTTGCGGCCGACTTGTGT
1 GG-CTTT-GAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGT
* * * * * *
913780 GAGCTTTAGAAGGGTTGCCA-CTAGCTTGTGTGGGCTTTA-AGAAGGGCTGCCACCTACTTGTGT
64 GGGCTTTAGAAAGGTTGCCACCGA-CTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGT
913843 G
128 G
*
913844 GGCTTT-AGAAGAGGTTGCCACT-AGCTTATGTGGGCTTTTGAG-AGGGTTGCCACCGACTTGTG
1 GGCTTTGAGAA-AGGTTGCCACTGA-CTTGTGTGGGC-TTTGAGAAGGGTTGCCACCGACTTGTG
* * * *
913906 TGGGCTTTGAGAAGAGGTTGCCACCGACTTATGTGGGCTTTTA-AG-AGGGTTGCCACCGGCTTA
63 TGGGCTTT-AGAA-AGGTTGCCACCGACTTGTGTGGGC-TTTAGAGAAGGGTTGCCATCGACTTG
913969 TGTG
125 TGTG
913973 GGCTTTGA
1 GGCTTTGA
913981 TAGGAAAAAA
Statistics
Matches: 865, Mismatches: 126, Indels: 84
0.80 0.12 0.08
Matches are distributed among these distances:
125 31 0.04
126 52 0.06
127 144 0.17
128 355 0.41
129 181 0.21
130 73 0.08
131 8 0.01
132 21 0.02
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (128 bp):
GGCTTTGAGAAAGGTTGCCACTGACTTGTGTGGGCTTTGAGAAGGGTTGCCACCGACTTGTGTGG
GCTTTAGAAAGGTTGCCACCGACTTGTGTGGGCTTTAGAGAAGGGTTGCCATCGACTTGTGTG
Found at i:920215 original size:23 final size:24
Alignment explanation
Indices: 920184--920233 Score: 66
Period size: 23 Copynumber: 2.1 Consensus size: 24
920174 ATATAACTAT
*
920184 ATTTGTAATATTTTGATAAATAAA
1 ATTTGTAATATTTTGATAAAGAAA
* *
920208 ATTT-TAATTTTTTTATAAAGAAA
1 ATTTGTAATATTTTGATAAAGAAA
920231 ATT
1 ATT
920234 GATGTGAATG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (24 bp):
ATTTGTAATATTTTGATAAAGAAA
Found at i:922328 original size:20 final size:20
Alignment explanation
Indices: 922303--922467 Score: 123
Period size: 20 Copynumber: 7.7 Consensus size: 20
922293 TTTTAACGAG
922303 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
922323 ATGTATCGATACATCTGGGTAAAAAGACAGA
1 ATGTATCGATACAT-T--G-----A-A-A-A
*
922354 ATGTATCGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * * *
922374 ATGTATTGATACATTCATAC
1 ATGTATCGATACATTGAAAA
* *
922394 ATGTATGGATACATTGAAGA
1 ATGTATCGATACATTGAAAA
* * * * *
922414 ATGTGTTGATACATTCATAC
1 ATGTATCGATACATTGAAAA
922434 ATGTATCGATACATTGAAAA
1 ATGTATCGATACATTGAAAA
922454 ATGTATCGATACAT
1 ATGTATCGATACAT
922468 CTGGGTACTT
Statistics
Matches: 112, Mismatches: 22, Indels: 22
0.72 0.14 0.14
Matches are distributed among these distances:
20 88 0.79
21 1 0.01
22 1 0.01
23 2 0.02
28 2 0.02
29 1 0.01
30 2 0.02
31 15 0.13
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.32
Consensus pattern (20 bp):
ATGTATCGATACATTGAAAA
Found at i:922409 original size:40 final size:40
Alignment explanation
Indices: 922354--922467 Score: 192
Period size: 40 Copynumber: 2.9 Consensus size: 40
922344 AAAAGACAGA
922354 ATGTATCGATACATTGAAGAATGTATTGATACATTCATAC
1 ATGTATCGATACATTGAAGAATGTATTGATACATTCATAC
* *
922394 ATGTATGGATACATTGAAGAATGTGTTGATACATTCATAC
1 ATGTATCGATACATTGAAGAATGTATTGATACATTCATAC
* *
922434 ATGTATCGATACATTGAAAAATGTATCGATACAT
1 ATGTATCGATACATTGAAGAATGTATTGATACAT
922468 CTGGGTACTT
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.38, C:0.11, G:0.17, T:0.34
Consensus pattern (40 bp):
ATGTATCGATACATTGAAGAATGTATTGATACATTCATAC
Found at i:927082 original size:20 final size:20
Alignment explanation
Indices: 927057--927122 Score: 71
Period size: 20 Copynumber: 3.3 Consensus size: 20
927047 GTAAAAAGAT
927057 AGAATGTATCGATACATTAA
1 AGAATGTATCGATACATTAA
* *
927077 AGAATGTATCGATTCATTCAT
1 AGAATGTATCGATACATT-AA
* * *
927098 A-CATGTATCGATATATTGA
1 AGAATGTATCGATACATTAA
927117 AGAATG
1 AGAATG
927123 ATCCTCAACC
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.92
21 2 0.06
ACGTcount: A:0.39, C:0.11, G:0.17, T:0.33
Consensus pattern (20 bp):
AGAATGTATCGATACATTAA
Found at i:927082 original size:91 final size:92
Alignment explanation
Indices: 926916--927110 Score: 250
Period size: 91 Copynumber: 2.1 Consensus size: 92
926906 TTTTAACTAG
* * **
926916 ATGTATCGATACATAGAAAAATGTATCGATACATTTGGGAAGAAAAAGACAGAATATATCGATAC
1 ATGTATCGATAAATAGAAAAATATATCGATACATCAGGG-AGAAAAAGACAGAATATATCGATAC
* * *
926981 GTTGAAGAATGTATCGATACAATCTTAC
65 ATTAAAGAATGTATCGATACAATCATAC
* * *
927009 ATGTATCGATAAATTA-AAAAATATATCGATACATCAGGG-TAAAAAGATAGAATGTATCGATAC
1 ATGTATCGATAAA-TAGAAAAATATATCGATACATCAGGGAGAAAAAGACAGAATATATCGATAC
* *
927072 ATTAAAGAATGTATCGATTCATTCATAC
65 ATTAAAGAATGTATCGATACAATCATAC
927100 ATGTATCGATA
1 ATGTATCGATA
927111 TATTGAAGAA
Statistics
Matches: 89, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
91 55 0.62
93 32 0.36
94 2 0.02
ACGTcount: A:0.44, C:0.11, G:0.16, T:0.29
Consensus pattern (92 bp):
ATGTATCGATAAATAGAAAAATATATCGATACATCAGGGAGAAAAAGACAGAATATATCGATACA
TTAAAGAATGTATCGATACAATCATAC
Found at i:927865 original size:28 final size:28
Alignment explanation
Indices: 927824--928299 Score: 472
Period size: 28 Copynumber: 16.6 Consensus size: 28
927814 ACCGACTTGC
* * *
927824 GTGGGTTTTTAAAGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
927852 GTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * *
927880 ATGGGCTTTAAAAAGAATGCCACTGACTT
1 GTGGGCTTT-GAAAGGATGCCACTGACTT
** *
927909 GTGGGCTTT-AAAAAAGTGCCACTAACTT
1 GTGGGCTTTGAAAGGA-TGCCACTGACTT
* * * *
927937 ATGAGCTATGAAAGGATGCCACTGAATT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
927965 ATGGGCTTTGAAAGGATGCCACAGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * *
927993 GTGGGCTTTGAAAAGAGTTGCCACCGACTC
1 GTGGGCTTTG-AAAG-GATGCCACTGACTT
* *
928023 ATGGGCATTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
928051 GTGGGCTTTGAATGGGTGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
*
928079 GTGGGCTTTGAAAGGATGCCACTAACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* * ** *
928107 GTGGGCTTTGAAAAGAGTTACCACCAACTC
1 GTGGGCTTTG-AAAG-GATGCCACTGACTT
* * *
928137 GTAGGCTTTGAATGGATGCCATTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
928165 GTGGGCTTTGAAAGGATGCCACTGACTT
1 GTGGGCTTTGAAAGGATGCCACTGACTT
* *
928193 GTGGGCTTTGAAAAGAGTTGCCACCGACTCAT
1 GTGGGCTTTG-AAAG-GATGCCACTGACT--T
* * *
928225 AT-GGCTTTGAAAAGAGTGCCACTGGCTT
1 GTGGGCTTTGAAAGGA-TGCCACTGACTT
* *
928253 ATAGGCTTTGAAAGGATGCCA-TCGACTT
1 GTGGGCTTTGAAAGGATGCCACT-GACTT
928281 GTGGGCTTTGAAAGTGATG
1 GTGGGCTTTGAAAG-GATG
928300 AACGTTCTAG
Statistics
Matches: 371, Mismatches: 62, Indels: 29
0.80 0.13 0.06
Matches are distributed among these distances:
27 6 0.02
28 230 0.62
29 65 0.18
30 61 0.16
31 7 0.02
32 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (28 bp):
GTGGGCTTTGAAAGGATGCCACTGACTT
Found at i:928046 original size:86 final size:84
Alignment explanation
Indices: 927853--928265 Score: 330
Period size: 86 Copynumber: 4.8 Consensus size: 84
927843 CACTGACTTG
* *
927853 TGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTTAAAAAGAATGCCACTGACTTGTGGGCTTT
1 TGGGC-TTGAAAGGATGCCACTGACTTATGGGCTTT-GAAAGGATGCCACTGACTTGTGGGCTTT
* *
927918 -AAAAAAGTGCCACTAACTTA
64 GAAAAAAGTGCCACCAACTCA
* * *
927938 TGAGCTATGAAAGGATGCCACTGAATTATGGGCTTTGAAAGGATGCCACAGACTTGTGGGCTTTG
1 TGGGCT-TGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
* *
928003 AAAAGAGTTGCCACCGACTCA
65 AAAAAAG-TGCCACCAACTCA
* * *
928024 TGGGCATTGAAAGGATGCCACTGACTTGTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTG
1 TGGGC-TTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG
** * **
928089 AAAGGA-TGCCACTAACTTG
65 AAAAAAGTGCCACCAACTCA
* * ** ** * * *
928108 TGGGCTTTGAAAAGAGTTACCACCAACTCGTAGGCTTTGAATGGATGCCATTGACTTGTGGGCTT
1 TGGGC-TTG-AAAG-GATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTT
** ** **
928173 TGAAAGGA-TGCCACTGACTTG
63 TGAAAAAAGTGCCACCAACTCA
* * * * * *
928194 TGGGCTTTGAAAAGAGTTGCCACCGACTCATAT-GGCTTTGAAAAGAGTGCCACTGGCTTATAGG
1 TGGGC-TTG-AAAG-GATGCCACTGACT--TATGGGCTTTGAAAGGA-TGCCACTGACTTGTGGG
928258 CTTTGAAA
60 CTTTGAAA
928266 GGATGCCATC
Statistics
Matches: 279, Mismatches: 40, Indels: 15
0.84 0.12 0.04
Matches are distributed among these distances:
84 43 0.15
85 42 0.15
86 160 0.57
87 12 0.04
88 22 0.08
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (84 bp):
TGGGCTTGAAAGGATGCCACTGACTTATGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGA
AAAAAGTGCCACCAACTCA
Found at i:928092 original size:114 final size:114
Alignment explanation
Indices: 927824--928299 Score: 532
Period size: 114 Copynumber: 4.2 Consensus size: 114
927814 ACCGACTTGC
* * * *
927824 GTGGGTTTTTAAAGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTGACTTATGGGCTTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACAGACTTATGGGCTTT
* * * ** * ** *
927889 AAAAAGA-ATGCCACTGACTTGTGGGCTTT-AAAAAAGTGCCACTAACTT
66 GAAAAGAGTTGCCACCGACTCATAGGCTTTGAAAGGA-TGCCACTGACTT
* * * * * *
927937 ATGAGCTATGAAAGGATGCCACTGAATTATGGGCTTTGAAAGGATGCCACAGACTTGTGGGCTTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACAGACTTATGGGCTTT
* *
928002 GAAAAGAGTTGCCACCGACTCATGGGCATTGAAAGGATGCCACTGACTT
66 GAAAAGAGTTGCCACCGACTCATAGGCTTTGAAAGGATGCCACTGACTT
* * *
928051 GTGGGCTTTGAATGGGTGCCACTGACTTGTGGGCTTTGAAAGGATGCCACTA-ACTTGTGGGCTT
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCAC-AGACTTATGGGCTT
* * * * *
928115 TGAAAAGAGTTACCACCAACTCGTAGGCTTTGAATGGATGCCATTGACTT
65 TGAAAAGAGTTGCCACCGACTCATAGGCTTTGAAAGGATGCCACTGACTT
* *
928165 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAAGAGTTGCCACCGACTCATAT-GG
1 GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTG-AAAG-GATGCCACAGACT--TATGGG
* * *
928229 CTTTGAAAAGAG-TGCCACTGGCTTATAGGCTTTGAAAGGATGCCA-TCGACTT
62 CTTTGAAAAGAGTTGCCACCGACTCATAGGCTTTGAAAGGATGCCACT-GACTT
928281 GTGGGCTTTGAAAGTGATG
1 GTGGGCTTTGAAAG-GATG
928300 AACGTTCTAG
Statistics
Matches: 308, Mismatches: 45, Indels: 16
0.83 0.12 0.04
Matches are distributed among these distances:
113 61 0.20
114 162 0.53
115 10 0.03
116 55 0.18
117 18 0.06
118 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.28
Consensus pattern (114 bp):
GTGGGCTTTGAAAGGATGCCACTGACTTGTGGGCTTTGAAAGGATGCCACAGACTTATGGGCTTT
GAAAAGAGTTGCCACCGACTCATAGGCTTTGAAAGGATGCCACTGACTT
Found at i:932469 original size:30 final size:30
Alignment explanation
Indices: 932396--932525 Score: 154
Period size: 31 Copynumber: 4.2 Consensus size: 30
932386 AATTCTTCAA
*
932396 ATCTCTTCTCAAAGCCCACGACTCAGTGGC
1 ATCTTTTCTCAAAGCCCACGACTCAGTGGC
* *
932426 AATCTCTTCTCAAAGCCCATGACTCAGTGGC
1 -ATCTTTTCTCAAAGCCCACGACTCAGTGGC
*
932457 AT-TTTGTCTCAAAGTCCACGACTCAGTGGC
1 ATCTTT-TCTCAAAGCCCACGACTCAGTGGC
* *
932487 ATCCTTTTCTTCAAAGCCCACAACTCCGTGGC
1 AT-CTTTTC-TCAAAGCCCACGACTCAGTGGC
*
932519 ACCTTTT
1 ATCTTTT
932526 TCTTTTTAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
29 2 0.02
30 26 0.30
31 36 0.41
32 23 0.26
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.28
Consensus pattern (30 bp):
ATCTTTTCTCAAAGCCCACGACTCAGTGGC
Found at i:932608 original size:33 final size:34
Alignment explanation
Indices: 932499--932936 Score: 430
Period size: 33 Copynumber: 12.7 Consensus size: 34
932489 CCTTTTCTTC
*
932499 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
932533 AAAGCCCACAACTCCGTGGCACTCTTTTTCAAC-TTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTC--CTTTT
* *
932569 -AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* **
932602 -AAGTCCATGACTCCGTGGCACC---TT-CTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
932631 CAAAGCCCACAATTTCGTGGCAACCTTTTT-CTTCTC
1 -AAAGCCCACAACTCCGTGGC-ACCTTTTTCCTT-TT
* * *
932667 AAAGCCTACCACTCCGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* *
932700 AAAGCCTACAACTTCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* * *
932736 CAAAGCCCACCACTCTGTGGCA-CTTTTTCTTTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
* * *
932770 AAAACCCACAACTCCGTGACACTCTTTTTTCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTTCCTTTT
* *
932805 CAAAGCCCACCACTCCGTGGC-CCTTTTTCTTTTT
1 -AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
932839 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
*
932875 CGAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 -AAAGCCCACAACTCCGTGGCAC-CTTTTT-CCTTTT
* *
932912 AAAGTCCACGACTCCGTGGCACCTT
1 AAAGCCCACAACTCCGTGGCACCTT
932937 CTTTTCAAAG
Statistics
Matches: 339, Mismatches: 42, Indels: 45
0.80 0.10 0.11
Matches are distributed among these distances:
29 5 0.01
30 2 0.01
31 14 0.04
32 4 0.01
33 85 0.25
34 47 0.14
35 80 0.24
36 50 0.15
37 52 0.15
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCCTTTT
Found at i:932765 original size:70 final size:68
Alignment explanation
Indices: 932465--932951 Score: 478
Period size: 70 Copynumber: 7.2 Consensus size: 68
932455 GCATTTTGTC
* * * * *
932465 TCAAAGTCCACGACTCAGTGGCATCCTTTTC--TTCAAAGCCCACAACTCCGTGGCACCTTTTT-
1 TCAAAGCCCACCACTCCGTGGCA-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
932527 CTTT
65 CTTT
* * ** * *
932531 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCAACTTT-AAGTCCACAACTCCGTGGCACCTTGT
1 TCAAAGCCCACCACTCCGTGGCA--CTTTTTC-TTTTTAAAGCCCACAACTCCGTGGCACCTTTT
932595 TCCTTT
63 TCCTTT
* ** * * * *
932601 T--AAGTCCATGACTCCGTGGCAC--CTTCTTTTCAAAGCCCACAATTTCGTGGCAACCTTTTT-
1 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGC-ACCTTTTTC
*
932661 CTTC
65 CTTT
* * *
932665 TCAAAGCCTACCACTCCGTGGCACTTTTTCTTTTTAAAGCCTACAACTTCGTGGCACTCTTTTTC
1 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-
932730 CCTTT
64 CCTTT
* * * *
932735 TCAAAGCCCACCACTCTGTGGCACTTTTTCTTTTTAAAACCCACAACTCCGTGACACTCTTTTTT
1 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTTC
932800 CTTT
65 CTTT
*
932804 TCAAAGCCCACCACTCCGTGGCCCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-
932869 CCTTT
64 CCTTT
* * * * *
932874 TCGAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACTCCGTGGCACC---T
1 TCAAAGCCCACCACTCCGTGGCA--CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
932936 T-CTTT
63 TCCTTT
932941 TCAAAGCCCAC
1 TCAAAGCCCAC
932952 ACAAGTCGGT
Statistics
Matches: 355, Mismatches: 48, Indels: 35
0.81 0.11 0.08
Matches are distributed among these distances:
63 2 0.01
64 23 0.06
65 7 0.02
66 37 0.10
67 23 0.06
68 48 0.14
69 91 0.26
70 92 0.26
72 7 0.02
73 25 0.07
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (68 bp):
TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCC
TTT
Found at i:932964 original size:139 final size:136
Alignment explanation
Indices: 932503--932951 Score: 441
Period size: 139 Copynumber: 3.3 Consensus size: 136
932493 TTCTTCAAAG
* * * * **
932503 CCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCAACTT
1 CCCACAACTCCGTGACA-CTCTTTCTTTTCAAAGCCCACCACTCCGTGGCA--CTTTTTC-TTTT
* * * ** *
932568 T-AAGTCCACAACTCCGTGGCAC-CTTGTT-CCTTTT--AAGTCCATGACTCCGTGGCAC--CTT
62 TAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTT
*
932626 -CTTTTCAAAG
127 CCTTTT-AAAA
* * * * * *
932636 CCCACAATTTCGTGGCAACCTTTTTCTTCTCAAAGCCTACCACTCCGTGGCACTTTTTCTTTTTA
1 CCCACAACTCCGTGAC-A-CTCTTTCTTTTCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTA
* * * * *
932701 AAGCCTACAACTTCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACCACTCTGTGGCACTTTTTCT
64 AAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTCC
932766 TTTTAAAA
129 TTTTAAAA
*
932774 CCCACAACTCCGTGACACTCTTTTTTCTTTTCAAAGCCCACCACTCCGTGGCCCTTTTTCTTTTT
1 CCCACAACTCCGTGACACTC---TTTCTTTTCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTT
*
932839 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCGAAGCCCACAACTCCGTGGCACTCTTTT
63 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCA--CTTTT
*
932904 TCCCTTTTAAAG
126 T-CCTTTTAAAA
* * *
932916 TCCACGACTCCGTGGCAC-C-TTCTTTTCAAAGCCCAC
1 CCCACAACTCCGTGACACTCTTTCTTTTCAAAGCCCAC
932952 ACAAGTCGGT
Statistics
Matches: 265, Mismatches: 36, Indels: 26
0.81 0.11 0.08
Matches are distributed among these distances:
131 3 0.01
132 25 0.09
133 19 0.07
134 37 0.14
136 19 0.07
137 18 0.07
138 18 0.07
139 96 0.36
141 7 0.03
142 23 0.09
ACGTcount: A:0.20, C:0.34, G:0.12, T:0.34
Consensus pattern (136 bp):
CCCACAACTCCGTGACACTCTTTCTTTTCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAA
GCCCACAACTCCGTGGCACTCTTTTTCCCTTTTCAAAGCCCACAACTCCGTGGCACTTTTTCCTT
TTAAAA
Found at i:933137 original size:92 final size:92
Alignment explanation
Indices: 932980--933613 Score: 1081
Period size: 92 Copynumber: 6.9 Consensus size: 92
932970 TTCTAAGCCT
* *
932980 AATATAGCTGACCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
*
933045 AATCAGCACATTGGCACCTTTAAGTCC
66 AATCAGCACATTGACACCTTTAAGTCC
* *
933072 AATATCGCTGGCCTTGAATCAGCAGATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
*
933137 AATCAGCACATTGACACCTTTAAGCCC
66 AATCAGCACATTGACACCTTTAAGTCC
933164 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
*
933229 AATCAGCACATTGGCACCTTTAAGTCC
66 AATCAGCACATTGACACCTTTAAGTCC
* * *
933256 AATATCGCTGGCCTTGAATCAGCAGATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
933321 AATCAGCACATTGACACCTTTAAG-CC
66 AATCAGCACATTGACACCTTTAAGTCC
*
933347 TAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTTTTAAGTCCAATGTAGCTGGCCTT
1 -AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTT
*
933412 GAATCAGCACATTGGCACCTTTAAGTCC
65 GAATCAGCACATTGACACCTTTAAGTCC
* *
933440 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
933505 AATCAGCACATTGACACCTTTAAGTCC
66 AATCAGCACATTGACACCTTTAAGTCC
* *
933532 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAATGTAGCTGGCC
933597 TTGAATCAGCACATTGA
63 TTGAATCAGCACATTGA
933614 AATCCTTTTT
Statistics
Matches: 510, Mismatches: 27, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
91 2 0.00
92 464 0.91
93 2 0.00
94 2 0.00
95 40 0.08
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGACACCTTTAAGTCC
Found at i:933289 original size:184 final size:184
Alignment explanation
Indices: 932968--933878 Score: 1185
Period size: 184 Copynumber: 4.7 Consensus size: 184
932958 CGGTGGCAAC
* * *
932968 CCTTCTAAGCCTAATATAGCTGACCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCCAATG
1 CCTT-TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATG
933033 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGA
65 TAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGA
933098 TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
130 TTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
933153 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
933218 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGAT
*
933283 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGACA
131 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
* *
933337 CCTTTAAGCCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTTTTTAAGTCCAATGT
1 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
*
933402 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATAT
66 AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGAT
*
933467 TGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
131 TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
* * *
933521 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAA
* * * *
933586 TGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGC
63 TGTAGCTGGCCTTGAATCAGCACATTG------------GCACCTTTAAGTCCAATATCGCTGGC
* * *
933651 CGTGAATCAACATATTGGCATCTTTATCACTTTTCTCACCTTCATCTTTAAGTCCAATGTAGCTG
116 CTTGAATCAGCAGATTGG---C---A-C-C---T-T---C-T--TCTTTAAGTCCAATGTAGCTG
*
933716 GCCTTGACTCAGCACATTGGCACCTTCA
163 GCCTTGAATCAGCACATT-G-A----CA
* * * *
933744 CCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TCATCTTTAAGTCCAATGT
1 CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
* *
933808 AGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTAAGTCCAATGTCGTTGGCCTTGAATCAGC
66 AGCTGGCCTTGAATCAGCACATTGGCACCT----TTAAGTCCAATATCGCTGGCCTTGAATCAGC
*
933873 ACATTG
127 AGATTG
933879 ACATCCTTTT
Statistics
Matches: 651, Mismatches: 32, Indels: 60
0.88 0.04 0.08
Matches are distributed among these distances:
184 398 0.61
185 4 0.01
186 2 0.00
187 39 0.06
199 38 0.06
202 1 0.00
205 1 0.00
206 1 0.00
207 5 0.01
210 1 0.00
211 33 0.05
215 1 0.00
217 38 0.06
218 1 0.00
219 42 0.06
220 1 0.00
223 45 0.07
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (184 bp):
CCTTTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGAT
TGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACA
Found at i:933484 original size:276 final size:275
Alignment explanation
Indices: 932980--933878 Score: 1134
Period size: 276 Copynumber: 3.1 Consensus size: 275
932970 TTCTAAGCCT
* *
932980 AATATAGCTGACCTTGAATCAACATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
* *
933045 AATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCAGATTGGCACCTTCT
66 AATCAGCACATTGACACCTTTAAG-CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCT
* * *
933110 TCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACACCTTTAAGCCCAATATAGCTGG
130 TTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
933175 CCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
195 CCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
933240 TGGCACCTTTAAGTCC
260 TGGCACCTTTAAGTCC
* * *
933256 AATATCGCTGGCCTTGAATCAGCAGATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTAGCCTTG
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
*
933321 AATCAGCACATTGACACCTTTAAGCCTAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT
66 AATCAGCACATTGACACCTTTAAGCC-AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCT
*
933386 TTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATCGCTGG
130 TTTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGG
*
933451 CCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
195 CCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACAT
*
933516 TGACACCTTTAAGTCC
260 TGGCACCTTTAAGTCC
* *
933532 AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCC
1 AATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAATGTAGCTGGCC
* * * *
933597 TTGAATCAGCACATTGAAATCCTTTTTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAAC
63 TTGAATCAGCACATTG--A----------CACCTTTAAG-CCAATATCGCTGGCCTTGAATCAGC
*
933662 ATATTGGCATCTTTATCACTTTTCTCACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCA
115 ATATTGG---C---A-C-C---T-T---CTT--T-TTTAAGTCCAATGTAGCTGGCCTTGAATCA
*
933727 GCACATTGGCACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TC
162 GCACATTGGCACC-T-----TTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTC
*
933791 ATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTCACCTTAAGTCC
221 TTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCT----TTAAGTCC
* * * *
933850 AATGTCGTTGGCCTTGAATCAGCACATTG
1 AATATAGCTGGCCTTGAATCAGCATATTG
933879 ACATCCTTTT
Statistics
Matches: 544, Mismatches: 34, Indels: 48
0.87 0.05 0.08
Matches are distributed among these distances:
275 2 0.00
276 291 0.53
278 2 0.00
279 39 0.07
281 1 0.00
291 35 0.06
292 2 0.00
294 1 0.00
297 1 0.00
298 1 0.00
299 1 0.00
302 1 0.00
303 1 0.00
306 3 0.01
308 1 0.00
309 42 0.08
310 1 0.00
314 46 0.08
315 40 0.07
318 33 0.06
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (275 bp):
AATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTG
AATCAGCACATTGACACCTTTAAGCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTT
TTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCACCTTTAAGTCCAATATAGCTGGC
CTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATT
GGCACCTTTAAGTCC
Found at i:933657 original size:55 final size:52
Alignment explanation
Indices: 933522--933659 Score: 168
Period size: 52 Copynumber: 2.6 Consensus size: 52
933512 ACATTGACAC
* **
933522 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGAAACCTTTTCCAT
* *
933574 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGAAA-CC-TTTTC-CAT
* * * *
933629 CTTTAAGCCCAATATCGTTGGCCGTGAATCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCA
933660 ACATATTGGC
Statistics
Matches: 72, Mismatches: 11, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
52 37 0.51
53 2 0.03
54 5 0.07
55 28 0.39
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.35
Consensus pattern (52 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGAAACCTTTTCCAT
Found at i:933763 original size:49 final size:48
Alignment explanation
Indices: 933687--933878 Score: 296
Period size: 48 Copynumber: 4.0 Consensus size: 48
933677 TCACTTTTCT
* *
933687 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG
1 CACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
933736 CACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
1 CACC-TCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
*
933785 CACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
1 CACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* *
933833 CACCTCACC-TTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTG
1 CACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
933879 ACATCCTTTT
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 35 0.26
48 49 0.37
49 49 0.37
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (48 bp):
CACCTCACCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
Found at i:933818 original size:48 final size:49
Alignment explanation
Indices: 933687--933878 Score: 300
Period size: 49 Copynumber: 4.0 Consensus size: 49
933677 TCACTTTTCT
*
933687 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGG
1 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * *
933736 CACCTTCACCATTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
933785 CACC-TCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
1 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
* * *
933833 CACC-TCA-CCTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTG
1 CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTG
933879 ACATCCTTTT
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 36 0.27
48 48 0.36
49 49 0.37
ACGTcount: A:0.25, C:0.29, G:0.18, T:0.29
Consensus pattern (49 bp):
CACCTTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGG
Found at i:933904 original size:266 final size:264
Alignment explanation
Indices: 933430--934009 Score: 896
Period size: 266 Copynumber: 2.2 Consensus size: 264
933420 ACATTGGCAC
* *** * *
933430 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCATTAAGTCCAATATA
*
933495 GCTGGCCTTGAATCAGCACATTGACACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATT
66 GCTGGCCTTGAATCAGCACATTGACACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT
* *
933560 GGCACCTTTTCCATCTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTTTTC
131 GGCACC--TTCCATCCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTTTTC
933625 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAC
194 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCAC
933690 CTTCAT
259 CTTCAT
* * *
933696 CTTTAAGTCCAATGTAGCTGGCCTTGACTCAGCACATTGGCACCTTCACCATTAAGTCCAATATA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCATTAAGTCCAATATA
* *
933761 GCTGGCCTTGAATCAGCACATTGGCACCTCATCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGC
66 GCTGGCCTTGAATCAGCACATT-G-A---CACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGC
* * *
933826 ACATTGGCACC-T-CA-CCTTAAGTCCAATGTCGTTGGCCTTGAATCAGCACATTGACATCCTTT
126 ACATTGGCACCTTCCATCCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTT
933888 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCT
191 TTCTCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCT
*
933953 CATCTTCAT
256 CACCTTCAT
* *
933962 CTTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGCACCTTCA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCA
934010 TCATCTTTAA
Statistics
Matches: 286, Mismatches: 23, Indels: 10
0.90 0.07 0.03
Matches are distributed among these distances:
266 237 0.83
267 3 0.01
268 2 0.01
271 44 0.15
ACGTcount: A:0.25, C:0.26, G:0.16, T:0.34
Consensus pattern (264 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCACCATTAAGTCCAATATA
GCTGGCCTTGAATCAGCACATTGACACCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATT
GGCACCTTCCATCCTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGAAATCCTTTTTCTC
ATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCACTTTTCTCACCT
TCAT
Found at i:933999 original size:67 final size:68
Alignment explanation
Indices: 933891--934017 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
933881 ATCCTTTTTC
* * *
933891 TCATCTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTTATCA-CTTTTCTCA
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
933955 TCT
66 TCT
* * * **
933958 TCATCTTTAAGTCCAATATTGCTGGCCTTGAATCAGTATATTGGCACCTTCATCATCTTT
1 TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTT
934018 AAAACCCAAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (68 bp):
TCATCTTTAAGCCCAATATCGCTGGCCGTGAATCAACATATTGGCACCTTCATCATCTTTTCTCA
TCT
Found at i:934804 original size:13 final size:13
Alignment explanation
Indices: 934786--934810 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
934776 CATAAAATGT
934786 TGTATCGATACAA
1 TGTATCGATACAA
934799 TGTATCGATACA
1 TGTATCGATACA
934811 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:934808 original size:33 final size:33
Alignment explanation
Indices: 934766--934835 Score: 104
Period size: 33 Copynumber: 2.1 Consensus size: 33
934756 TTCAACGATT
934766 TGTATCGATACATAAAATGTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
*** *
934799 TGTATCGATACATATTTTTTTGTATCGATACAA
1 TGTATCGATACATAAAATGTTGTATCGATACAA
934832 TGTA
1 TGTA
934836 AGCTACTGCC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.34, C:0.11, G:0.14, T:0.40
Consensus pattern (33 bp):
TGTATCGATACATAAAATGTTGTATCGATACAA
Found at i:934892 original size:13 final size:13
Alignment explanation
Indices: 934874--934898 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
934864 ATTACTCACA
934874 TGTATCGATACAT
1 TGTATCGATACAT
934887 TGTATCGATACA
1 TGTATCGATACA
934899 CTAATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:937102 original size:26 final size:26
Alignment explanation
Indices: 937078--937128 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 26
937068 CATTTCCCAT
937078 ATTCAT-C-GGGGACACTCCAACCCC
1 ATTCATCCAGGGGACACTCCAACCCC
*
937102 ATTCCTCCGAGGGGACACTCCAACCCC
1 ATTCATCC-AGGGGACACTCCAACCCC
937129 GTTTTTAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 5 0.22
25 1 0.04
27 17 0.74
ACGTcount: A:0.24, C:0.43, G:0.18, T:0.16
Consensus pattern (26 bp):
ATTCATCCAGGGGACACTCCAACCCC
Found at i:938351 original size:10 final size:10
Alignment explanation
Indices: 938335--938421 Score: 63
Period size: 10 Copynumber: 8.7 Consensus size: 10
938325 CCCCTTTCTA
938335 TTTTTTTGTT
1 TTTTTTTGTT
*
938345 ATTTTTTTCTT
1 -TTTTTTTGTT
938356 GGTTTTTTTGTT
1 --TTTTTTTGTT
938368 TTTTTTTG-T
1 TTTTTTTGTT
***
938377 TTTTTTAACT
1 TTTTTTTGTT
938387 TTTTTTTG--
1 TTTTTTTGTT
* *
938395 GTTTTTTGGT
1 TTTTTTTGTT
*
938405 TTTTTTGGTT
1 TTTTTTTGTT
938415 TTTTTTT
1 TTTTTTT
938422 TTGGGTATGA
Statistics
Matches: 60, Mismatches: 12, Indels: 9
0.74 0.15 0.11
Matches are distributed among these distances:
8 7 0.12
9 7 0.12
10 28 0.47
11 9 0.15
12 9 0.15
ACGTcount: A:0.03, C:0.02, G:0.13, T:0.82
Consensus pattern (10 bp):
TTTTTTTGTT
Found at i:938370 original size:9 final size:9
Alignment explanation
Indices: 938347--938420 Score: 67
Period size: 9 Copynumber: 7.9 Consensus size: 9
938337 TTTTTGTTAT
938347 TTTTTTCTTG
1 TTTTTT-TTG
*
938357 GTTTTTTTG
1 TTTTTTTTG
938366 TTTTTTTTTG
1 -TTTTTTTTG
**
938376 TTTTTTTAAC
1 TTTTTTT-TG
938386 TTTTTTTTG
1 TTTTTTTTG
* *
938395 GTTTTTTGG
1 TTTTTTTTG
*
938404 TTTTTTTGG
1 TTTTTTTTG
938413 TTTTTTTT
1 TTTTTTTT
938421 TTTGGGTATG
Statistics
Matches: 52, Mismatches: 10, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
9 32 0.62
10 20 0.38
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.81
Consensus pattern (9 bp):
TTTTTTTTG
Found at i:938399 original size:38 final size:38
Alignment explanation
Indices: 938347--938419 Score: 112
Period size: 37 Copynumber: 1.9 Consensus size: 38
938337 TTTTTGTTAT
* *
938347 TTTTTTCTTGGTTTTTTTGTTTTTTTTTGTTTTTTTAAC
1 TTTTTTCTTGG-TTTTTTGGTTTTTTTGGTTTTTTTAAC
938386 TTTTTT-TTGGTTTTTTGGTTTTTTTGGTTTTTTT
1 TTTTTTCTTGGTTTTTTGGTTTTTTTGGTTTTTTT
938420 TTTTGGGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 22 0.69
38 4 0.12
39 6 0.19
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.81
Consensus pattern (38 bp):
TTTTTTCTTGGTTTTTTGGTTTTTTTGGTTTTTTTAAC
Found at i:938420 original size:38 final size:39
Alignment explanation
Indices: 938347--938419 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 39
938337 TTTTTGTTAT
* *
938347 TTTTTTCTTGGTTTTTTTGTTTTTTTTTGTTTTTTTAAC
1 TTTTTTCTTGGTTTTTTGGTTTTTTTGTGTTTTTTTAAC
938386 TTTTTT-TTGGTTTTTTGGTTTTTTTG-GTTTTTTT
1 TTTTTTCTTGGTTTTTTGGTTTTTTTGTGTTTTTTT
938420 TTTTGGGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
37 8 0.25
38 18 0.56
39 6 0.19
ACGTcount: A:0.03, C:0.03, G:0.14, T:0.81
Consensus pattern (39 bp):
TTTTTTCTTGGTTTTTTGGTTTTTTTGTGTTTTTTTAAC
Found at i:952533 original size:20 final size:20
Alignment explanation
Indices: 952466--952540 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 20
952456 CAAAAGACAG
*
952466 AATGTATCGATGA-ATTGAAG
1 AATGTATCGAT-ACATTGAAA
* * *
952486 AATGTATCGATACAGTCATA
1 AATGTATCGATACATTGAAA
* *
952506 CATATATCGATACATTGAAA
1 AATGTATCGATACATTGAAA
952526 AATGTATCGATACAT
1 AATGTATCGATACAT
952541 CTGGGTAAGA
Statistics
Matches: 43, Mismatches: 11, Indels: 2
0.77 0.20 0.04
Matches are distributed among these distances:
19 1 0.02
20 42 0.98
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.31
Consensus pattern (20 bp):
AATGTATCGATACATTGAAA
Found at i:957291 original size:71 final size:71
Alignment explanation
Indices: 957175--957332 Score: 298
Period size: 71 Copynumber: 2.2 Consensus size: 71
957165 CGGAGGAATG
*
957175 GGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAATCTTGATAAGTTTTA
1 GGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAACCTTGATAAGTTTTA
957240 AAAATA
66 AAAATA
957246 GGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAACCTTGATAAGTTTTA
1 GGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAACCTTGATAAGTTTTA
*
957311 AATATA
66 AAAATA
957317 GGGTTGGAGTATCCTC
1 GGGTTGGAGTATCCTC
957333 TCAAAAGACT
Statistics
Matches: 85, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
71 85 1.00
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.31
Consensus pattern (71 bp):
GGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAACCTTGATAAGTTTTA
AAAATA
Found at i:957467 original size:97 final size:94
Alignment explanation
Indices: 957239--957470 Score: 236
Period size: 98 Copynumber: 2.4 Consensus size: 94
957229 GATAAGTTTT
* * *
957239 AAAAATAGGGTTGGAGTATCCTCGATGATGACAATTTAAGCAAAGATAAGAATTAAACCTTGATA
1 AAAAAT-GGGTTGGAGTATCCACGATAAGGA-AATTTAAGCAAAGATAAGAATTAAACCTTGATA
*
957304 AGTTTTAAATATAGGGTTGGAGTATCCTCTC
64 AGTTTTAAATATAGGGTTGGAGTATCCCCTC
* * * ** *
957335 AAAAGACTGGGATTGGAGTATCCCCAATGAAGGAAATTTAAGTAAA-ATTAAGGTTTAAATCTTG
1 AAAA-A-TGGG-TTGGAGTATCCACGAT-AAGGAAATTTAAGCAAAGA-TAAGAATTAAACCTTG
*
957399 ATAAGTTTTAAA-A-AGGGATTGGAGTATCCCCTTGG
61 ATAAGTTTTAAATATAGGG-TTGGAGTATCCCC-T-C
957434 AAAAATGGAGTTGGAGTATCCACGATAAAGGAAATTT
1 AAAAATGG-GTTGGAGTATCCACGAT-AAGGAAATTT
957471 TTGACGTTTT
Statistics
Matches: 114, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
96 8 0.07
97 45 0.39
98 54 0.47
99 7 0.06
ACGTcount: A:0.38, C:0.10, G:0.22, T:0.29
Consensus pattern (94 bp):
AAAAATGGGTTGGAGTATCCACGATAAGGAAATTTAAGCAAAGATAAGAATTAAACCTTGATAAG
TTTTAAATATAGGGTTGGAGTATCCCCTC
Found at i:959469 original size:21 final size:21
Alignment explanation
Indices: 959439--959495 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 21
959429 ACGGTGATTT
* *
959439 TGTATTGATACATTTAAGGCA
1 TGTATAGATACATTTAACGCA
* * *
959460 TGTATCGATACA-TTCACGTA
1 TGTATAGATACATTTAACGCA
959480 TGTATAGATACATTTA
1 TGTATAGATACATTTA
959496 CTATTTCTAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
20 16 0.55
21 13 0.45
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (21 bp):
TGTATAGATACATTTAACGCA
Found at i:966120 original size:21 final size:21
Alignment explanation
Indices: 966096--966148 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
966086 TTTTATAATT
966096 TGTATCGATACAAT-TAGTAAA
1 TGTATCGATACAATAT-GTAAA
* *
966117 TGTATCAATAC-ATATGTGAA
1 TGTATCGATACAATATGTAAA
966137 TGTATCGATACA
1 TGTATCGATACA
966149 TGCCAAAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 16 0.59
21 11 0.41
ACGTcount: A:0.40, C:0.11, G:0.15, T:0.34
Consensus pattern (21 bp):
TGTATCGATACAATATGTAAA
Found at i:970513 original size:32 final size:32
Alignment explanation
Indices: 970472--970547 Score: 152
Period size: 32 Copynumber: 2.4 Consensus size: 32
970462 CATTTTATAG
970472 TGTATCGATACATCTGGGCAAATTTGCCTGCA
1 TGTATCGATACATCTGGGCAAATTTGCCTGCA
970504 TGTATCGATACATCTGGGCAAATTTGCCTGCA
1 TGTATCGATACATCTGGGCAAATTTGCCTGCA
970536 TGTATCGATACA
1 TGTATCGATACA
970548 AAGATCAGTG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (32 bp):
TGTATCGATACATCTGGGCAAATTTGCCTGCA
Found at i:970574 original size:13 final size:13
Alignment explanation
Indices: 970556--970580 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
970546 CAAAGATCAG
970556 TGTATCGATACAA
1 TGTATCGATACAA
970569 TGTATCGATACA
1 TGTATCGATACA
970581 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:970662 original size:32 final size:32
Alignment explanation
Indices: 970621--970718 Score: 160
Period size: 32 Copynumber: 3.0 Consensus size: 32
970611 AGTAGCTTAA
*
970621 ATTGTATCGATACAAAACTTATGCATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
*
970653 ATTGTATCGATACAACACTTATGTATCGATAC
1 ATTGTATCGATACAAAACTTATGTATCGATAC
*
970685 ATTGTATCGATACAATACTTTATGTATCGATAC
1 ATTGTATCGATACAAAAC-TTATGTATCGATAC
970718 A
1 A
970719 AATCGTTGAA
Statistics
Matches: 62, Mismatches: 3, Indels: 1
0.94 0.05 0.02
Matches are distributed among these distances:
32 47 0.76
33 15 0.24
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
ATTGTATCGATACAAAACTTATGTATCGATAC
Found at i:970663 original size:13 final size:13
Alignment explanation
Indices: 970645--970698 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 13
970635 AAACTTATGC
970645 ATCGATACATTGT
1 ATCGATACATTGT
970658 ATCGATACAACACTTATGT
1 ATCGAT---ACA--T-TGT
970677 ATCGATACATTGT
1 ATCGATACATTGT
970690 ATCGATACA
1 ATCGATACA
970699 ATACTTTATG
Statistics
Matches: 35, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 18 0.51
14 1 0.03
16 6 0.17
18 1 0.03
19 9 0.26
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.33
Consensus pattern (13 bp):
ATCGATACATTGT
Found at i:970679 original size:19 final size:19
Alignment explanation
Indices: 970623--970719 Score: 74
Period size: 19 Copynumber: 5.7 Consensus size: 19
970613 TAGCTTAAAT
*
970623 TGTATCGATACAAAACTTA
1 TGTATCGATACAACACTTA
*
970642 TGCATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
970655 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
970674 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
*
970687 TGTATCGATACAATACTTTA
1 TGTATCGATACAACAC-TTA
970707 TGTATCGATACAA
1 TGTATCGATACAA
970720 ATCGTTGAAT
Statistics
Matches: 61, Mismatches: 4, Indels: 25
0.68 0.04 0.28
Matches are distributed among these distances:
13 17 0.28
14 2 0.03
16 10 0.16
18 1 0.02
19 18 0.30
20 13 0.21
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:976649 original size:79 final size:76
Alignment explanation
Indices: 976553--976885 Score: 326
Period size: 79 Copynumber: 4.2 Consensus size: 76
976543 GATAATAACG
* *
976553 GGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGAAAAATCGATGATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATA-TGAAAAATTGATGATT
*
976618 AGGAAATGAAATC
65 A-GAAATAAAATC
* * * * ** * * *
976631 GGGATTGGAGTATCCCCTTGGAAATAACGAGATTAAAGTATTCCCGATTTTGAAAAATTGATGTT
1 GGG-TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGA-TATGAAAAATTGATG-A
976696 TTAGAAATAAAATCC
63 TTAGAAATAAAAT-C
* *
976711 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATTAAT-ATT
1 GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGA-TATGAAAAATTGATGA--
* *
976775 TTAAAAATAAAACC
63 TTAGAAATAAAATC
* * * * *
976789 AGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCTGATGAAAGGAAAATTGGTGT
1 -GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGAT--ATGAAAAATTGATGA
* *
976854 TTTGAAAATAAAACC
63 TTAG-AAATAAAATC
976869 GGGGTTGGAGTATCCCC
1 -GGGTTGGAGTATCCCC
976886 GATTGTGGAA
Statistics
Matches: 211, Mismatches: 33, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
78 5 0.02
79 164 0.78
80 42 0.20
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (76 bp):
GGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATATGAAAAATTGATGATTA
GAAATAAAATC
Found at i:976871 original size:158 final size:157
Alignment explanation
Indices: 976544--976885 Score: 381
Period size: 158 Copynumber: 2.2 Consensus size: 157
976534 AATTTTGGAG
* *
976544 ATAATAACGGGGTTGGAGTATCCCCTTGAAAATAACGGGGTTGGAGTATCCCCGATAGTGAAAAA
1 ATAA-AACCGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATAGTGAAAAA
* * * * * *
976609 TCGATGATTAGGAAATGAAATCGGGATTGGAGTATCCCCTTGGAAATAACGAGATTAAAGTATTC
65 TCAATGATTAGAAAATAAAACCGGGATTGGAGTATCCCCTCGAAAATAACGAGATTAAAGTATTC
***
976674 CCGATTTTGAAAAATTGATGTTTTAGAA
130 CCGATAAAGAAAAATTGATGTTTTAGAA
*
976702 ATAAAATCCGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATTA-TGAGAA
1 ATAAAA-CCGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGA-TAGTGAAAA
* * * **
976766 ATTAAT-ATTTTA-AAAATAAAACCAGGG-TTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGT
64 ATCAATGA--TTAGAAAATAAAACC-GGGATTGGAGTATCCCCTCGAAAATAACGAGATTAAAGT
* *
976828 A-TCCCTGATGAAAGGAAAATTGGTGTTTT-GAAA
126 ATTCCC-GAT-AAAGAAAAATTGATGTTTTAG-AA
976861 ATAAAACCGGGGTTGGAGTATCCCC
1 ATAAAACC-GGGTTGGAGTATCCCC
976886 GATTGTGGAA
Statistics
Matches: 156, Mismatches: 19, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
157 7 0.04
158 103 0.66
159 46 0.29
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (157 bp):
ATAAAACCGGGTTGGAGTATCCCCTCGAAAATAACGGGGTTGGAGTATCCCCGATAGTGAAAAAT
CAATGATTAGAAAATAAAACCGGGATTGGAGTATCCCCTCGAAAATAACGAGATTAAAGTATTCC
CGATAAAGAAAAATTGATGTTTTAGAA
Found at i:976883 original size:52 final size:51
Alignment explanation
Indices: 976816--976987 Score: 190
Period size: 51 Copynumber: 3.4 Consensus size: 51
976806 TCGAAAATAA
*
976816 CGGGGTTGGAGTATCCCTGATGAAAGGAAAATTGGTGTTTT-GAAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATG-AAGGAAAATTGGTGTTTTAG-AAATAAAAC
* * *
976868 CGGGGTTGGAGTATCCCCGATTG-TGGAAAATTAGTGTTTTAGAGATAAAAC
1 CGGGGTTGGAGTATCCCCGA-TGAAGGAAAATTGGTGTTTTAGAAATAAAAC
* * * *
976919 CGGGGTGGGAGTATCCCCGATTATTA-G-AAATTGATATTTTAGAAATAAAAC
1 CGGGGTTGGAGTATCCCCGATGA--AGGAAAATTGGTGTTTTAGAAATAAAAC
*
976970 CGGGGTTGGGGTATCCCC
1 CGGGGTTGGAGTATCCCC
976988 TCGGAGGCAA
Statistics
Matches: 102, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
50 1 0.01
51 78 0.76
52 21 0.21
53 2 0.02
ACGTcount: A:0.30, C:0.13, G:0.29, T:0.28
Consensus pattern (51 bp):
CGGGGTTGGAGTATCCCCGATGAAGGAAAATTGGTGTTTTAGAAATAAAAC
Found at i:977011 original size:28 final size:28
Alignment explanation
Indices: 976971--977043 Score: 128
Period size: 28 Copynumber: 2.6 Consensus size: 28
976961 AAATAAAACC
*
976971 GGGGTTGGGGTATCCCCTCGGAGGCAAT
1 GGGGTTGGAGTATCCCCTCGGAGGCAAT
*
976999 GGGGTTGGAGTATCCCCTCGGAGGTAAT
1 GGGGTTGGAGTATCCCCTCGGAGGCAAT
977027 GGGGTTGGAGTATCCCC
1 GGGGTTGGAGTATCCCC
977044 GATGAAATAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.15, C:0.21, G:0.41, T:0.23
Consensus pattern (28 bp):
GGGGTTGGAGTATCCCCTCGGAGGCAAT
Found at i:977172 original size:52 final size:53
Alignment explanation
Indices: 977080--977181 Score: 145
Period size: 52 Copynumber: 1.9 Consensus size: 53
977070 TCGCTTGTGA
* * *
977080 AAAATTGGTGTTTTTTGGAAATAAAATCGGAGTTGGAGTATCCCCGATTAAAGG
1 AAAATTGGTG-TTTTTGAAAAGAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
977134 AAAATTGGTG-TTTTGAAAAGAAAACCAGGA-TTGGAGTATCCCCGATTA
1 AAAATTGGTGTTTTTGAAAAGAAAACC-GGAGTTGGAGTATCCCCGATTA
977182 TAAACAATTG
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
52 31 0.70
53 3 0.07
54 10 0.23
ACGTcount: A:0.35, C:0.11, G:0.25, T:0.29
Consensus pattern (53 bp):
AAAATTGGTGTTTTTGAAAAGAAAACCGGAGTTGGAGTATCCCCGATTAAAGG
Found at i:979621 original size:63 final size:63
Alignment explanation
Indices: 979546--979687 Score: 275
Period size: 63 Copynumber: 2.3 Consensus size: 63
979536 ATAGATGTAT
*
979546 CGATACAATGTATCGACACACAGAAAAATGTATCGATACATTTCCTTGGCAGTAGCTTCCTAG
1 CGATACATTGTATCGACACACAGAAAAATGTATCGATACATTTCCTTGGCAGTAGCTTCCTAG
979609 CGATACATTGTATCGACACACAGAAAAATGTATCGATACATTTCCTTGGCAGTAGCTTCCTAG
1 CGATACATTGTATCGACACACAGAAAAATGTATCGATACATTTCCTTGGCAGTAGCTTCCTAG
979672 CGATACATTGTATCGA
1 CGATACATTGTATCGA
979688 TACATTGTAT
Statistics
Matches: 78, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
63 78 1.00
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (63 bp):
CGATACATTGTATCGACACACAGAAAAATGTATCGATACATTTCCTTGGCAGTAGCTTCCTAG
Found at i:979690 original size:13 final size:13
Alignment explanation
Indices: 979672--979704 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
979662 AGCTTCCTAG
979672 CGATACATTGTAT
1 CGATACATTGTAT
979685 CGATACATTGTAT
1 CGATACATTGTAT
979698 CGATACA
1 CGATACA
979705 ACACTTATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.33
Consensus pattern (13 bp):
CGATACATTGTAT
Found at i:979852 original size:16 final size:16
Alignment explanation
Indices: 979831--979861 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
979821 TAAAAATGTG
979831 ATTTTTGATTTTTTTT
1 ATTTTTGATTTTTTTT
979847 ATTTTTGATTTTTTT
1 ATTTTTGATTTTTTT
979862 CCAAACACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.00, G:0.06, T:0.81
Consensus pattern (16 bp):
ATTTTTGATTTTTTTT
Found at i:982762 original size:30 final size:30
Alignment explanation
Indices: 982488--982755 Score: 313
Period size: 30 Copynumber: 8.8 Consensus size: 30
982478 TCTTCAAATC
982488 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
982518 TCTCTTC-CTAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTC-AAAGTCCACGACTCAGTGGCA
* * * *
982548 TCTTTTCTTCAAATTCCACAACTTAGTGGCA
1 TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * *
982579 TCTTTTTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * *
982609 TCCTTTTCTTCCAAGTCCACGACTCAATGGCA
1 T-CTCTTC-TCAAAGTCCACGACTCAGTGGCA
* * * *
982641 TTTTTTTCTTCAAAGTCCATGACTCAATGGCA
1 -TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
*
982673 TCTCTTCTCAAATTCCACGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
982703 TCTCTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAAGTCCACGACTCAGTGGCA
* *
982733 TCTCTTCCCAAATTCCACGACTC
1 TCTCTTCTCAAAGTCCACGACTC
982756 TATGGCACCC
Statistics
Matches: 207, Mismatches: 25, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
29 1 0.00
30 122 0.59
31 34 0.16
32 49 0.24
33 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.32
Consensus pattern (30 bp):
TCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:982762 original size:60 final size:60
Alignment explanation
Indices: 982488--982755 Score: 322
Period size: 61 Copynumber: 4.4 Consensus size: 60
982478 TCTTCAAATC
*
982488 TCTCTTCTCAAAGTCCACGACTCAGTGGCATCTCTTC-CTAAAGTCCACGACTCAGTGGCA
1 TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTC-AAAGTCCACGACTCAGTGGCA
* * * * * *
982548 TCTTTTCTTCAAATTCCACAACTTAGTGGCATCTTTTTTCTAAGTCCACGACTCAGTGGCA
1 TCTCTTC-TCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
* * * * * * * *
982609 TCCTTTTCTTCCAAGTCCACGACTCAATGGCATTTTTTTCTTCAAAGTCCATGACTCAATGGCA
1 T-CTCTTC-TCAAATTCCACGACTCAGTGGCA-TCTCTTC-TCAAAGTCCACGACTCAGTGGCA
*
982673 TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCATGACTCAGTGGCA
1 TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
*
982733 TCTCTTCCCAAATTCCACGACTC
1 TCTCTTCTCAAATTCCACGACTC
982756 TATGGCACCC
Statistics
Matches: 178, Mismatches: 25, Indels: 10
0.84 0.12 0.05
Matches are distributed among these distances:
60 50 0.28
61 51 0.29
62 46 0.26
63 10 0.06
64 21 0.12
ACGTcount: A:0.23, C:0.31, G:0.13, T:0.32
Consensus pattern (60 bp):
TCTCTTCTCAAATTCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCA
Found at i:982848 original size:34 final size:33
Alignment explanation
Indices: 982764--983580 Score: 507
Period size: 34 Copynumber: 25.5 Consensus size: 33
982754 TCTATGGCAC
* *
982764 CCTTTTAAGTCCACAAC-TCTGTGGCA-CCTTTC
1 CCTTTTAAGTCCACAACTTC-GTGGCATCTTTTT
*
982796 CCTTTTAAAGCCCACAACTTCGTGGCATTCTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCA-TCTTTTT
982831 CCTTTTAAGTCCACAACTTCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* *
982858 CCTTTGAAGTCCACAACTCCGTGGCATC----T
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
*
982887 CCTTTTAAGTCCACAACTTCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* * *
982920 --TTTTAAAGCCCACAACTCCATGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCA-TCTTTTT
* * *
982953 CTTTTTAAGTCCACAACTCCATGGCATCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* *
982986 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* * *
983019 CTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCA-TCTTTTT
*
983054 CCTTTTAAGTCCACAACTCCGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
*
983087 CCTTCTAAGTCCACAAC-TCAGTGGCATCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCATCTTTTT
* **
983120 CCTTTTAAGTCCATAACCCCGTGGCATTCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCA-TCTTTTT
* * *
983154 CCTTTTAAGTCCATAAC-TCTATGACA-C-----
1 CCTTTTAAGTCCACAACTTC-GTGGCATCTTTTT
* * * *
983181 CTTTTTAAGCCCACGAC-TCTGTGGCACCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCATCTTTTT
* * *
983214 CTTTTTAAAGCCCACAACTTCATGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTTCGTGGCA-TCTTTTT
* *
983249 CCTTTTAAGCCCACGAC-TCAGTGGCAATC----T
1 CCTTTTAAGTCCACAACTTC-GTGGC-ATCTTTTT
*
983279 -CTTTTAAGGCCACAAC-TCTGTGGCACTCTTTTT
1 CCTTTTAAGTCCACAACTTC-GTGGCA-TCTTTTT
*
983312 CCTTTTAAGTCCACAACTCCGTGGCA------T
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* *
983339 CCTTTTCAGTCCACAACTCCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
*
983366 CCTTTTAAGTCCACAACTCCGTGGCA-C-----
1 CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
* * * *
983393 CCTTTTAAGTCTATAACTCCGTGGCACCTTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCATC-TTTTT
* *
983427 CTTTTTAAAGCCCACAAC-TCTGTGGCACTCTTTTT
1 CCTTTT-AAGTCCACAACTTC-GTGGCA-TCTTTTT
* * * *
983462 CCTTTTAATTCCATAAC-TCTATGGCATCTTTTC
1 CCTTTTAAGTCCACAACTTC-GTGGCATCTTTTT
** * * *
983495 CCTTTTAAGTCCATGAC-TCTATGGCACCCTTTTC
1 CCTTTTAAGTCCACAACTTC-GTGGCA-TCTTTTT
* * *
983529 CCTTTTAAGCCCACACCTCCGTGGCATCCCTTTTT
1 CCTTTTAAGTCCACAACTTCGTGGCAT--CTTTTT
983564 --TTTGTAAGTCCACAACT
1 CCTTT-TAAGTCCACAACT
983581 CCGTTGCACC
Statistics
Matches: 655, Mismatches: 76, Indels: 106
0.78 0.09 0.13
Matches are distributed among these distances:
27 120 0.18
28 4 0.01
29 48 0.07
30 1 0.00
31 4 0.01
32 26 0.04
33 165 0.25
34 216 0.33
35 70 0.11
36 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.36
Consensus pattern (33 bp):
CCTTTTAAGTCCACAACTTCGTGGCATCTTTTT
Found at i:983293 original size:63 final size:63
Alignment explanation
Indices: 982858--983371 Score: 222
Period size: 67 Copynumber: 8.0 Consensus size: 63
982848 TTCGTGGCAC
* * * * *
982858 CCTTTGAAGTCCACAACTCCGTGGC-ATCTCCTTTTAAGTCCACAACTTCGTGGCAC-CTTTTT
1 CCTTTTAAGCCCACGACTCAGTGGCAATCT-CTTTTAAGCCCACAACTTCGTGGCACTCTTTTT
* * * * *
982920 --TTTTAAAGCCCACAACTCCA-TGGCACTCTTTTTCTTTTTAAGTCCACAACTCCATGGCA-TC
1 CCTTTT-AAGCCCACGACT-CAGTGGCAATC----TC-TTTTAAGCCCACAACTTCGTGGCACTC
982981 TTTTT
59 TTTTT
* * * * * *
982986 CCTTTTAAGTCCACAACTCCGTGGCACCTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACTCTT
1 CCTTTTAAGCCCACGACTCAGTGGCA---ATCTC-TTTT-AAGCCCACAACTTCGTGGCACTCTT
983051 TTT
61 TTT
* * * * *
983054 CCTTTTAAGTCCACAACTCCGTGGC-ATCTTTTTCCTTCTAAGTCCACAAC-TCAGTGGCA-TCT
1 CCTTTTAAGCCCACGACTCAGTGGCAATC----T-CTTTTAAGCCCACAACTTC-GTGGCACTCT
983116 TTTT
60 TTTT
* ** * * * * * * *
983120 CCTTTTAAGTCCATAACCCCGTGGCATTCTTTTTCCTTTTAAGTCCATAAC-TCTATGACAC-C-
1 CCTTTTAAGCCCACGACTCAGTGGCAATC----T-CTTTTAAGCCCACAACTTC-GTGGCACTCT
983182 ---T
60 TTTT
* * * *
983183 --TTTTAAGCCCACGACTCTGTGGCACCTTTTTCTTTTTAAAGCCCACAACTTCATGGCACTCTT
1 CCTTTTAAGCCCACGACTCAGTGGCA---ATCTC-TTTT-AAGCCCACAACTTCGTGGCACTCTT
983246 TTT
61 TTT
*
983249 CCTTTTAAGCCCACGACTCAGTGGCAATCTCTTTTAAGGCCACAAC-TCTGTGGCACTCTTTTT
1 CCTTTTAAGCCCACGACTCAGTGGCAATCTCTTTTAAGCCCACAACTTC-GTGGCACTCTTTTT
* * * * * * *
983312 CCTTTTAAGTCCACAACTCCGTGGC-ATC-CTTTTCAGTCCACAACTCCGTGGCACCCTTTT
1 CCTTTTAAGCCCACGACTCAGTGGCAATCTCTTTTAAGCCCACAACTTCGTGGCACTCTTTT
983372 AAGTCCACAA
Statistics
Matches: 366, Mismatches: 46, Indels: 81
0.74 0.09 0.16
Matches are distributed among these distances:
59 1 0.00
60 8 0.02
61 75 0.20
62 12 0.03
63 46 0.13
64 7 0.02
65 4 0.01
66 69 0.19
67 79 0.22
68 63 0.17
69 1 0.00
70 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.12, T:0.36
Consensus pattern (63 bp):
CCTTTTAAGCCCACGACTCAGTGGCAATCTCTTTTAAGCCCACAACTTCGTGGCACTCTTTTT
Found at i:983419 original size:27 final size:27
Alignment explanation
Indices: 983312--983425 Score: 183
Period size: 27 Copynumber: 4.2 Consensus size: 27
983302 CACTCTTTTT
*
983312 CCTTTTAAGTCCACAACTCCGTGGCAT
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
983339 CCTTTTCAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
983366 CCTTTTAAGTCCACAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
* *
983393 CCTTTTAAGTCTATAACTCCGTGGCAC
1 CCTTTTAAGTCCACAACTCCGTGGCAC
*
983420 CTTTTT
1 CCTTTT
983426 TCTTTTTAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 81 1.00
ACGTcount: A:0.20, C:0.34, G:0.14, T:0.32
Consensus pattern (27 bp):
CCTTTTAAGTCCACAACTCCGTGGCAC
Found at i:983722 original size:48 final size:47
Alignment explanation
Indices: 983598--983803 Score: 178
Period size: 48 Copynumber: 4.4 Consensus size: 47
983588 ACCATTAAGT
* * * **
983598 CCAATATCGCTGGCCTTGAATCAACATATTGGCATCTT-TACCATCTTGAGT
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT----T-TTAAAA
* * *
983649 CTAATATCGTTGGCCTTGAATCAGCATATTGACACCTTGTTTTTAAAA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTG-TTTTAAAA
* **
983697 CCAATGTCGCTGGCCTTGAATCAGCATATTGGCA--------TAAGC
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTTTTAAAA
*
983736 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAA
1 CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT-TTTAAAA
983784 CCAATATCGCTGGCCTTGAA
1 CCAATATCGCTGGCCTTGAA
983804 ATTGCACACT
Statistics
Matches: 125, Mismatches: 19, Indels: 25
0.74 0.11 0.15
Matches are distributed among these distances:
39 35 0.28
48 55 0.44
49 1 0.01
51 33 0.26
53 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (47 bp):
CCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTTTTAAAA
Found at i:983797 original size:87 final size:88
Alignment explanation
Indices: 983651--985264 Score: 707
Period size: 87 Copynumber: 17.9 Consensus size: 88
983641 TCTTGAGTCT
* * * * *
983651 AATATCGTTGGCCTTGAATCAGCATATTGACACCTTGTTTTTAAAACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
*
983716 ATCAGCATATTGGCA-TAAGCCC
66 ATCAGCATATTGGCATTAAGACC
* *
983738 AATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATATCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTG-
* * *
983803 AAT-TGCACACTGGC---AA-A--
65 AATCAGCATATTGGCATTAAGACC
* * *
983820 AATATCGCTGGCCTTGAATCAGCATATTGGCA-CTTTTACCATCTTGAGTCCAATATCGCTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-T-TTAAGACCAATATCGCTGGCC
* *
983884 GTGAATCAGCATATTGGCACCTTGTCTCTAAAACC
62 TTGAATCAGCATATTGGCA-------T-TAAGACC
* * * * *
983919 AATGTCACTGGCCTTGAATCAGCACATTGGCA------C---AAGCCCAATATCGCTGGCCATGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
983975 ATCAGCATATTGGCACCTTGTCTTTAAGACC
66 ATCAGCATATTGGCA--------TTAAGACC
* * ** * *
984006 AATGTCGCTGGCCTTG----A--A-ATT-GCACAC-TGGC-ACAAGTCCAATAACGCTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCAC-CTTGTCTTTAAGACCAATATCGCTGGCCTTG
* *
984061 AATCAGCATGTTGGCACTTTTACCATCTTAAGTCC
65 AATCAGCATATTGG---------CA--TTAAGACC
* * * * * *
984096 AATATCGTTGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
* * *
984161 ATCAGCACATTGGCA-CAAGTCC
66 ATCAGCATATTGGCATTAAGACC
* * * *
984183 AATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTGTTTAAGACCAATGTCGCTGGCCTTCA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTT-G
* * *
984248 AAT-AGCACATTGGCACT-AGTCC
65 AATCAGCATATTGGCATTAAGACC
* * * *
984270 AATATCGCTGGCCTTGAATAAGCATATTGGCACCTT-TACCATCTTGAGTCCAATATCGTTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-T-TTAAGACCAATATCGCTGGCC
*
984334 GTGAATCAGCATATTGGCACCTTGTCTCTAA-ACC
62 TTGAATCAGCATATTGGCA-------T-TAAGACC
* * * * *
984368 AATGTCGCTGGCCTTGAACCAGCACATTGGCA---------TAAGTCCAATATCGCCGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
984424 ATCAGCATATTGGCACCTTGTCTTTAAGACC
66 ATCAGCATATTGGCA--------TTAAGACC
* * * * * * *
984455 AATGTCGCTGGCCTTG-ATACAGCACATTAGCA------C---AAGTCTAATATTGCTAGCCTTG
1 AATATCGCTGGCCTTGAAT-CAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTG
* * *
984510 AATCAACATATTAGCACCTTTACCATCTTGAGTCT
65 AATCAGCATATTGGCA---TTA--A----GA--CC
* * * * * *
984545 AATATTGTTGGCCGTGAAACAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
* *
984610 ATCAGCACATTGGCA-TAAGCCC
66 ATCAGCATATTGGCATTAAGACC
*
984632 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTG-
* * *
984697 AAT-AGCACATTGGCA-CAAGTCC
65 AATCAGCATATTGGCATTAAGACC
* * * *
984719 AATATCGCTGGCCTTGAATAAGCATATTGGCACCTT-TACCATCTTGAGTCCAATATCGTTGGCC
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-T-TTAAGACCAATATCGCTGGCC
*
984783 GTGAATCAGCATATTGGCACCTTGTCTCTAAGACC
62 TTGAATCAGCATATTGGCA-------T-TAAGACC
* * *
984818 AATGTCGCTGGCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
984874 ATCAGCATATTGGCACCTTGTGTTTAAGACC
66 ATCAGCATATTGGCA--------TTAAGACC
* * *
984905 AATGTCGCTGGCCTTGAAAT-AGCACATTGGCA------C---AAGTCCAATATCGCTGGCCTTG
1 AATATCGCTGGCCTTG-AATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTG
*
984960 AATAAGCATATTGGCACCTTTACCATCTTGAGTCC
65 AATCAGCATATTGGCA---TTA--A----GA--CC
* * * *
984995 AATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGA
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
* *
985060 ATCAGCACATTGGCA-TAAGCCC
66 ATCAGCATATTGGCATTAAGACC
* * * * *
985082 AATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATGTCGTTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATATCGCTGGCCTTG
*
985147 AATCAGCACATTGGCCCCTTAACCATCTTTAAGACC
65 AATCAGCATATTGG---------CA---TTAAGACC
* * * * * **
985183 AATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATATCATTGGCCTTG
1 AATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAATATCGCTGGCCTTG
985248 AATCAGCATATTGGCAT
65 AATCAGCATATTGGCAT
985265 CTTTAACATT
Statistics
Matches: 1223, Mismatches: 168, Indels: 270
0.74 0.10 0.16
Matches are distributed among these distances:
79 3 0.00
80 3 0.00
81 5 0.00
82 40 0.03
83 2 0.00
84 6 0.00
85 31 0.03
86 41 0.03
87 587 0.48
88 61 0.05
89 14 0.01
90 131 0.11
91 1 0.00
92 3 0.00
93 2 0.00
94 1 0.00
95 4 0.00
96 7 0.01
97 7 0.01
98 38 0.03
99 158 0.13
101 78 0.06
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (88 bp):
AATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATATCGCTGGCCTTGA
ATCAGCATATTGGCATTAAGACC
Found at i:983894 original size:133 final size:135
Alignment explanation
Indices: 983736--983990 Score: 381
Period size: 133 Copynumber: 1.9 Consensus size: 135
983726 TGGCATAAGC
* * *
983736 CCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAATATCGCTGGCCTT
1 CCAATATCGCTAGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATATCACTGGCCTT
* *
983801 GAAAT-TGCACACTGGCA-AA-AATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATC
66 G-AATCAGCACACTGGCACAACAATATCGCTGGCCATGAATCAGCATATTGGCACTTTTACCATC
983863 TTGAGT
130 TTGAGT
* *
983869 CCAATATCGCTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCACTGGCCTT
1 CCAATATCGCTAGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATATCACTGGCCTT
*
983934 GAATCAGCACATTGGCACAAGCCCAATATCGCTGGCCATGAATCAGCATATTGGCAC
66 GAATCAGCACACTGGCACAA---CAATATCGCTGGCCATGAATCAGCATATTGGCAC
983991 CTTGTCTTTA
Statistics
Matches: 108, Mismatches: 8, Indels: 7
0.88 0.07 0.06
Matches are distributed among these distances:
132 3 0.03
133 71 0.66
134 2 0.02
138 32 0.30
ACGTcount: A:0.28, C:0.27, G:0.18, T:0.27
Consensus pattern (135 bp):
CCAATATCGCTAGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATATCACTGGCCTT
GAATCAGCACACTGGCACAACAATATCGCTGGCCATGAATCAGCATATTGGCACTTTTACCATCT
TGAGT
Found at i:984099 original size:138 final size:138
Alignment explanation
Indices: 983956--984215 Score: 423
Period size: 138 Copynumber: 1.9 Consensus size: 138
983946 TGGCACAAGC
* * *
983956 CCAATATCGCTGGCCATGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTT
* *
984021 GAAAT-TGCACACTGGCACAAGTCCAATAACGCTGGCCTTGAATCAGCATGTTGGCACTTTTACC
66 G-AATCAGCACACTGGCACAAGTCCAATAACGCTGGCCTTGAATCAGCATATTGGCACTTTTACC
984085 ATCTTAAGT
130 ATCTTAAGT
*
984094 CCAATATCGTTGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTT
1 CCAATATCGCTGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTT
* **
984159 GAATCAGCACATTGGCACAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCAC
66 GAATCAGCACACTGGCACAAGTCCAATAACGCTGGCCTTGAATCAGCATATTGGCAC
984216 CTTGTGTTTA
Statistics
Matches: 112, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
137 3 0.03
138 109 0.97
ACGTcount: A:0.27, C:0.26, G:0.19, T:0.28
Consensus pattern (138 bp):
CCAATATCGCTGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTT
GAATCAGCACACTGGCACAAGTCCAATAACGCTGGCCTTGAATCAGCATATTGGCACTTTTACCA
TCTTAAGT
Found at i:984157 original size:225 final size:225
Alignment explanation
Indices: 983594--985161 Score: 2556
Period size: 225 Copynumber: 7.0 Consensus size: 225
983584 TTGCACCATT
* * *
983594 AAGTCCAATATCGCTGGCCTTGAATCAACATATTGGCATCTTTACCATCTTGAGTCTAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
* * * * *
983659 TGGCCTTGAATCAGCATATTGACACCTTGTTTTTAAAACCAATGTCGCTGGCCTTGAATCAGCAT
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* *
983724 ATTGGCATAAGCCCAATATCGCTAGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAAACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* * *
983789 ATCGCTGGCCTTGAAATTGCACACTGGCA-
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
* *
983818 AA----AATATCGCTGGCCTTGAATCAGCATATTGGCACTTTTACCATCTTGAGTCCAATATCGC
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
*
983879 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCACTGGCCTTGAATCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* *
983944 ATTGGCACAAGCCCAATATCGCTGGCCATGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* *
984009 GTCGCTGGCCTTGAAATTGCACACTGGCAC
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
* * * *
984039 AAGTCCAATAACGCTGGCCTTGAATCAGCATGTTGGCACTTTTACCATCTTAAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
* *
984104 TGGCCATGAATCAGCATATTAGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* * * *
984169 ATTGGCACAAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTGTTTAAGACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
*
984234 GTCGCTGGCCTTCAAATAGCACATTGGCAC
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
* *
984264 TAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
*
984329 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCT-AAACCAATGTCGCTGGCCTTGAACCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* *
984393 ATTGGCATAAGTCCAATATCGCCGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
* * *
984458 GTCGCTGGCCTTGATACAGCACATTAGCAC
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
* * * * * * *
984488 AAGTCTAATATTGCTAGCCTTGAATCAACATATTAGCACCTTTACCATCTTGAGTCTAATATTGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
* *
984553 TGGCCGTGAAACAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
984618 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
984683 GTCGCTGGCCTTGAAATAGCACATTGGCAC
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
*
984713 AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
*
984778 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
*
984843 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTGTTTAAGACCAAT
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
984908 GTCGCTGGCCTTGAAATAGCACATTGGCAC
196 GTCGCTGGCCTTGAAATAGCACATTGGCAC
*
984938 AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
*
985003 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCAC
66 TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
* * *
985068 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGA
131 ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT-GTCTTTAAGACCAA
*
985133 TGTCGTTGGCCTTG-AATCAGCACATTGGC
195 TGTCGCTGGCCTTGAAAT-AGCACATTGGC
985162 CCCTTAACCA
Statistics
Matches: 1257, Mismatches: 79, Indels: 14
0.93 0.06 0.01
Matches are distributed among these distances:
220 202 0.16
221 2 0.00
224 207 0.16
225 811 0.65
226 35 0.03
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (225 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTACCATCTTGAGTCCAATATCGT
TGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAAACCAATGTCGCTGGCCTTGAATCAGCAC
ATTGGCATAAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAAT
GTCGCTGGCCTTGAAATAGCACATTGGCAC
Found at i:984320 original size:138 final size:136
Alignment explanation
Indices: 984177--985215 Score: 637
Period size: 138 Copynumber: 7.6 Consensus size: 136
984167 ACATTGGCAC
* *
984177 AAGTCCAATATTGCTGGCCTTGAATCAGCATATTGGCACCTTGTGTTTAAGACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
984242 CCTTCAAATAGCACATTGGCACT-AGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
66 CCTT-AAATAGCACATTGGCACTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
984306 TACCATCTT
130 T--CATCTT
* * * *
984315 GAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAA-ACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
** * *
984379 CCTTGAACCAGCACATTGGCA-TAAGTCCAATATCGCCGGCCTTGAATCAGCATATTGGCACCTT
66 CCTT-AAATAGCACATTGGCACTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
984443 GTC-T-TT
130 -TCATCTT
* * * * ** * * *
984449 AAGACCAATGTCGCTGGCCTTG-ATACAGCACATTAGCA-CAAGTC--T-A-A-TATTGCTAGCC
1 AAGTCCAATATCGCTGGCCTTGAAT-CAGCATATTGGCACCTTGTCTTTAAGACCAATG-TCG-C
* ** * * ** * * * * *
984507 TTGAATCAACATATTAGCACCTTTACCATCTTGAGTCTAATATTGTTGGCCGTGAA-ACAGCATA
63 TGGCCT-TA-A-A-TAGCA-CATTGGCA-C-TAAGTCCAATATCGCTGGCCTTGAATA-AGCATA
984571 TTGGCACCTTGTC-TC-T
120 TTGGCACCTT-TCATCTT
* * * * *
984587 AAGACCAATGTCGCTGGCCTTGAATCAGCACATTGGCA---------TAAGCCCAATATCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
* * * * *
984643 CCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGGCCTTGAA-ATAGCACAT
66 CCTTAAAT-AGCACATTGGCA------C--TAAGTCCAATATCGCTGGCCTTGAATA-AGCATAT
984707 TGG-------CA-C--
121 TGGCACCTTTCATCTT
* * * *
984713 AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT-TACCATCTTGAGTCCAATATCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGT--C-T-TTAAGACCAATGTCG
* * * * * * *
984777 TTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGGCCTTGAATCAGCA
62 CTGGCCTTAAAT-AGCACATTGGCA--------CTAAGTCCAATATCGCTGGCCTTGAATAAGCA
*
984842 CATTGG-------CA---T
118 TATTGGCACCTTTCATCTT
* *
984851 AAGCCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTGTTTAAGACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
984916 CCTTGAAATAGCACATTGGCAC-AAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
66 CCTT-AAATAGCACATTGGCACTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
984980 TACCATCTT
130 T--CATCTT
* * * *
984989 GAGTCCAATATCGTTGGCCGTGAATCAGCATATTGGCACCTTGTCTCTAAGACCAATGTCGCTGG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
* * * *
985054 CCTTGAATCAGCACATTGGCA-TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACC-T
66 CCTTAAAT-AGCACATTGGCACTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTT
985117 TCATCTTT
130 TCATC-TT
* * * * * * *
985125 AAGACCGATGTCGTTGGCCTTGAATCAGCACATTGGCCCCTTAACCATCTTTAAGACCAATGTCG
1 AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTT----GTCTTTAAGACCAATGTCG
* *
985190 CTGGCCTTGAATCAGTACATTGGCAC
62 CTGGCCTTAAAT-AGCACATTGGCAC
985216 CTTCATCTTT
Statistics
Matches: 726, Mismatches: 110, Indels: 127
0.75 0.11 0.13
Matches are distributed among these distances:
126 66 0.09
127 3 0.00
129 8 0.01
130 9 0.01
131 7 0.01
132 2 0.00
133 11 0.02
134 38 0.05
135 72 0.10
136 43 0.06
137 76 0.10
138 344 0.47
139 3 0.00
140 44 0.06
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (136 bp):
AAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTGTCTTTAAGACCAATGTCGCTGG
CCTTAAATAGCACATTGGCACTAAGTCCAATATCGCTGGCCTTGAATAAGCATATTGGCACCTTT
CATCTT
Found at i:985244 original size:49 final size:49
Alignment explanation
Indices: 985075--985263 Score: 252
Period size: 49 Copynumber: 3.8 Consensus size: 49
985065 CACATTGGCA
*
985075 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* * * *
985124 TAAGACCGATGTCGTTGGCCTTGAATCAGCACATTGGCCCCTTAACCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTT---CATCTT
* *
985176 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTT
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
* ** *
985225 TAAGTCCAATATCATTGGCCTTGAATCAGCATATTGGCA
1 TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCA
985264 TCTTTAACAT
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
49 77 0.63
52 45 0.37
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.30
Consensus pattern (49 bp):
TAAGACCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTT
Found at i:985286 original size:101 final size:101
Alignment explanation
Indices: 985075--985315 Score: 306
Period size: 101 Copynumber: 2.4 Consensus size: 101
985065 CACATTGGCA
* * * *
985075 TAAGCCCAATATCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCGATGTCGTT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
*
985140 GGCCTTGAATCAGCACATTGGCCCCTTAACCATCTT
66 GGCCTTGAATCAGCACATTGGCCCCTTAACCATCTC
* * *
985176 TAAGACCAATGTCGCTGGCCTTGAATCAGTACATTGGCACCTTCATCTTTAAGTCCAATATCATT
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
* * *
985241 GGCCTTGAATCAGCATATTGGCATCTTTAA-CAT-TCC
66 GGCCTTGAATCAGCACATTGGC-CCCTTAACCATCT-C
* * * **
985277 TAAGCCCAATGTCACCGACCTTGTCTCAGCACATTGGCA
1 TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCA
985316 TTTTTTTTCA
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
100 1 0.01
101 114 0.95
102 5 0.04
ACGTcount: A:0.25, C:0.28, G:0.17, T:0.29
Consensus pattern (101 bp):
TAAGCCCAATGTCGCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGACCAATATCATT
GGCCTTGAATCAGCACATTGGCCCCTTAACCATCTC
Found at i:992166 original size:51 final size:51
Alignment explanation
Indices: 992051--992189 Score: 181
Period size: 51 Copynumber: 2.7 Consensus size: 51
992041 ATTTGCCTAC
* * * *
992051 ATGTATCTATACATTGAAGAATGTATCGATACCTTTGGTTCAAAAACCTAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTTGGTT-AAAAACCCAGA
* *
992103 ATGTATCGATACAATGAAGAAGGTATTGATACATTTGGGTT-AAAACCCAGA
1 ATGTATCGATACAATGAAGAATGTATCGATACATTT-GGTTAAAAACCCAGA
* *
992154 ATGTATCGATACAATGAAAAATGTATCAATACATTT
1 ATGTATCGATACAATGAAGAATGTATCGATACATTT
992190 TCATTCTAGA
Statistics
Matches: 76, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
51 41 0.54
52 31 0.41
53 4 0.05
ACGTcount: A:0.40, C:0.13, G:0.17, T:0.31
Consensus pattern (51 bp):
ATGTATCGATACAATGAAGAATGTATCGATACATTTGGTTAAAAACCCAGA
Found at i:992276 original size:20 final size:21
Alignment explanation
Indices: 992248--992291 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
992238 TTCAAACATA
*
992248 TATCGATACATTTACTTA-TG
1 TATCAATACATTTACTTATTG
992268 TATCAATACATTTACTTATTG
1 TATCAATACATTTACTTATTG
992289 TAT
1 TAT
992292 TGATAAAAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 17 0.77
21 5 0.23
ACGTcount: A:0.32, C:0.14, G:0.07, T:0.48
Consensus pattern (21 bp):
TATCAATACATTTACTTATTG
Found at i:993090 original size:52 final size:52
Alignment explanation
Indices: 993012--993883 Score: 397
Period size: 52 Copynumber: 16.9 Consensus size: 52
993002 AAAAGGATGG
* * ** * *
993012 GAAGAATGCCAATGCGCTGAAACAAGGCTAGCAACATTGGACTTGAAGATAA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * *
993064 GAAGAATGCTAATGTGCCT-ATTCAAGGCTAGTGACATTAGACTTAAA-ATGA
1 GAAGAATGCTAATGTG-CTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* ** * * * * * *
993115 TAAGGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGGCTTAAAAATGATA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A-A
* * * * * * *
993169 -AAG-GTGCCAATAT-TTGATTCAAGGCTAGCGATATCGGATTTAAAGATGATA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A-A
* * * *
993220 -AAG-GTG-TCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGA
1 GAAGAATGCT-AATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * * *
993270 GAAGAATGCTAATGTGTTGATTTAAGGCCAGTGACATTAGACTTGAAGATCA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * ** * *
993322 GAAGAATGCTAACGTGCTAATTCAAGGCTAGTAACATTGGACTTAAAAAT-G
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
** * * *
993373 GTAAGGGTGCCAATGTGCTAATTCAA-GCTAGCGACATTGGGCTTAAA-ATGATA
1 G-AAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A-A
* * * * * * * * *
993426 -AAG-GTACCAATATCCTGATTCAAGGCAAACGATATCGGACTTAAA-ATGACA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGAT-A-A
* * * * * * *
993477 -AAG-GTGCTAATTTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * * *
993527 GAAGAATGCTAATGTGTTGATTTAAGGCCAACGACATTAGACTTAAAAATGA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * * *
993579 TAA-AAGTGCTAATATGTTGATTCAAAGCCAGCGATATTGGACTTAAAGATGA
1 GAAGAA-TGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * *
993631 CAA-AAGTGCCTACA--TGCTGATTCAAGGCCAGCGACATTGGGCTTAATGAT-G
1 GAAGAA-TG-CTA-ATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
** * * * * * * * *
993682 GTAA-AGGCGCCAATATGCTGATTCATGACCAGCGATATTGAACTTTAAGATAA
1 G-AAGA-ATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * * *
993735 GAAGAGTGCTAGTGTGTTGATTCAAGGCTAGTGATATTGGACATAAAGAT-G
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * * *
993786 GTAA-AAGTGCCAATATGCTGATTTAAGGCCAACGATATTGGACTTTAAGATAA
1 G-AAGAA-TGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
* * * * * *
993839 AAAGAGTGCCAATGTGCTAATTCAAGGCCAACGACATTGGACTTA
1 GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTA
993884 GAAAGAGACG
Statistics
Matches: 639, Mismatches: 150, Indels: 62
0.75 0.18 0.07
Matches are distributed among these distances:
50 23 0.04
51 168 0.26
52 434 0.68
53 12 0.02
54 2 0.00
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (52 bp):
GAAGAATGCTAATGTGCTGATTCAAGGCTAGCGACATTGGACTTAAAGATAA
Found at i:993546 original size:257 final size:258
Alignment explanation
Indices: 993045--993570 Score: 792
Period size: 257 Copynumber: 2.0 Consensus size: 258
993035 AAGGCTAGCA
* * *
993045 ACATTGGACTTGAAGATAAGAAGAATGCTAATGTGCCTATTCAAGGCTAGTGACATTAGACTTAA
1 ACATTAGACTTGAAGATAAGAAGAATGCTAACGTGCCTATTCAAGGCTAGTAACATTAGACTTAA
* *
993110 AATGATAAGGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGGCTTAAAAATGATAAAGGTG
66 AATGATAAGGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGATAAAGGTA
* * * * *
993175 CCAATATTTGATTCAAGGCTAGCGATATCGGATTTAAAGATGATAAAGGTGTCAATGTGCTGATT
131 CCAATATCTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTGTCAATGTGCTGATT
* * **
993240 CAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAATGCTAATGTGTTGATTTAAGGCCAGTG
196 CAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGATTTAAGGCCAACG
* *
993303 ACATTAGACTTGAAGATCAGAAGAATGCTAACGTG-CTAATTCAAGGCTAGTAACATTGGACTTA
1 ACATTAGACTTGAAGATAAGAAGAATGCTAACGTGCCT-ATTCAAGGCTAGTAACATTAGACTT-
* * * *
993367 AAAATGGTAAGGGTGCCAATGTGCTAATTCAA-GCTAGCGACATTGGGCTT-AAAATGATAAAGG
64 AAAATGATAAGGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGATAAAGG
*
993430 TACCAATATCCTGATTCAAGGCAAACGATATCGGACTTAAA-ATGACAAAGGTG-CTAATTTGCT
129 TACCAATAT-CTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTGTC-AATGTGCT
993493 GATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGATTTAAGGCCAA
192 GATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGATTTAAGGCCAA
993558 CG
257 CG
993560 ACATTAGACTT
1 ACATTAGACTT
993571 AAAAATGATA
Statistics
Matches: 243, Mismatches: 21, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
256 1 0.00
257 115 0.47
258 98 0.40
259 29 0.12
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (258 bp):
ACATTAGACTTGAAGATAAGAAGAATGCTAACGTGCCTATTCAAGGCTAGTAACATTAGACTTAA
AATGATAAGGGTGCCAATATGCTAATTCAAGGCCAACGACATTGGGCTTAAAAATGATAAAGGTA
CCAATATCTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTGTCAATGTGCTGATT
CAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGATTTAAGGCCAACG
Found at i:993572 original size:309 final size:310
Alignment explanation
Indices: 993034--993676 Score: 694
Period size: 309 Copynumber: 2.1 Consensus size: 310
993024 TGCGCTGAAA
* * * *
993034 CAAGGCTAGCAACATTGGACTTGAAGATAAGAAGAATGCTAATGTGCCTATTCAAGGCTAGTGAC
1 CAAGGCTAGCAACATTGGACTTAAAAATAAGAAGAATGCCAATGTGCCTATTCAAGGCTAGCGAC
* * * * * *
993099 ATTAGACTTAAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGGCTTAAAAA
66 ATTAGACTTAAAATGATAAAGGTACCAATATCCTGATTCAAGGCAAACGACATCGGACTTAAAAA
* * * * * ** * *
993164 TGATAAAGGTGCCAATATTTGATTCAAGGCTAGCGATATCGGATTTAAAGATGATAAAGGTGTCA
131 TGACAAAGGTGCCAATATTTGATTCAAGGCCAACAACATCGGACGTAAAGATGAGAAAGATGTCA
* * * * *
993229 ATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAA-TGCTAATGTGTTGATTT
196 ATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAAATGAGAA-AAGTGCTAATATGTTGATTC
* * *
993293 AAGGCCAGTGACATTAGACTTGAAGATCAGAAGAATGCTAACGTGCTAATT
260 AAAGCCAGCGACATTAGACTTAAAGATCAGAAGAATGCTAACGTGCTAATT
* * **
993344 CAAGGCTAGTAACATTGGACTTAAAAAT-GGTAAGGGTGCCAATGTG-CTAATTCAA-GCTAGCG
1 CAAGGCTAGCAACATTGGACTTAAAAATAAG-AAGAATGCCAATGTGCCT-ATTCAAGGCTAGCG
* * *
993406 ACATTGGGCTTAAAATGATAAAGGTACCAATATCCTGATTCAAGGCAAACGATATCGGACTT-AA
64 ACATTAGACTTAAAATGATAAAGGTACCAATATCCTGATTCAAGGCAAACGACATCGGACTTAAA
* *
993470 AATGACAAAGGTGCTAAT-TTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGAG-AAGAA
129 AATGACAAAGGTGCCAATATT--TGATTCAAGGCCAACAACATCGGACGTAAAGATGAGAAAG-A
* * * *
993533 TG-CTAATGTGTTGATTTAAGGCCAACGACATTAGACTTAAAAATGATAAAAGTGCTAATATGTT
191 TGTC-AATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAAATGAGAAAAGTGCTAATATGTT
* * * * * *
993597 GATTCAAAGCCAGCGATATTGGACTTAAAGATGACAA-AAGTGCCT-ACATGCTGATT
255 GATTCAAAGCCAGCGACATTAGACTTAAAGATCAGAAGAA-TG-CTAACGTGCTAATT
* * *
993653 CAAGGCCAGCGACATTGGGCTTAA
1 CAAGGCTAGCAACATTGGACTTAA
993677 TGATGGTAAA
Statistics
Matches: 274, Mismatches: 50, Indels: 19
0.80 0.15 0.06
Matches are distributed among these distances:
307 2 0.01
308 26 0.09
309 201 0.73
310 45 0.16
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (310 bp):
CAAGGCTAGCAACATTGGACTTAAAAATAAGAAGAATGCCAATGTGCCTATTCAAGGCTAGCGAC
ATTAGACTTAAAATGATAAAGGTACCAATATCCTGATTCAAGGCAAACGACATCGGACTTAAAAA
TGACAAAGGTGCCAATATTTGATTCAAGGCCAACAACATCGGACGTAAAGATGAGAAAGATGTCA
ATGTGCTGATTCAAGGCCAACAACATTAGACTTAAAAATGAGAAAAGTGCTAATATGTTGATTCA
AAGCCAGCGACATTAGACTTAAAGATCAGAAGAATGCTAACGTGCTAATT
Found at i:993620 original size:257 final size:258
Alignment explanation
Indices: 993097--993706 Score: 780
Period size: 257 Copynumber: 2.4 Consensus size: 258
993087 AAGGCTAGTG
* *
993097 ACATTAGACTT-AAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAACGACATTGGGCTTAA
1 ACATTGGACTTAAAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTT-A
* * * * *
993161 AAATGATAAAGGTGCCAATATTTGATTCAAGGCTAGCGATATCGGATTTAAAGATGATAAAGGTG
65 AAATGATAAAGGTGCCAATATCTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTG
* *
993226 TCAATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAGAAGAATGCTAATGTGTTGAT
130 TCAATGTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGAT
** * * * * * *
993291 TTAAGGCCAGTGACATTAGACTTGAAGATCAGAAGAATGCTAACGTGCTAATTCAAGGCTAGTA
195 TTAAGGCCAACGACATTAGACTTAAAAATCAGAAGAATGCTAACATGCTAATTCAAAGCCAGCA
* * * *
993355 ACATTGGACTTAAAAATGGTAAGGGTGCCAATGTGCTAATTCAA-GCTAGCGACATTGGGCTTAA
1 ACATTGGACTTAAAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAA
*
993419 AATGATAAAGGTACCAATATCCTGATTCAAGGCAAACGATATCGGACTTAAA-ATGACAAAGGTG
66 AATGATAAAGGTGCCAATAT-CTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTG
*
993483 -CTAATTTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGA
130 TC-AATGTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGA
* * * * *
993547 TTTAAGGCCAACGACATTAGACTTAAAAATGATAA-AAGTGCTAATATGTTGATTCAAAGCCAGC
194 TTTAAGGCCAACGACATTAGACTTAAAAATCAGAAGAA-TGCTAACATGCTAATTCAAAGCCAGC
*
993611 G
258 A
* * * ** * *
993612 ATATTGGACTTAAAGATGACAAAAGTGCCTACATGCTGATTCAAGGCCAGCGACATTGGGCTTAA
1 ACATTGGACTTAAAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAA
* * *
993677 TGATGGTAAAGGCGCCAATATGCTGATTCA
66 -AATGATAAAGGTGCCAATAT-CTGATTCA
993707 TGACCAGCGA
Statistics
Matches: 301, Mismatches: 45, Indels: 11
0.84 0.13 0.03
Matches are distributed among these distances:
256 3 0.01
257 173 0.57
258 72 0.24
259 53 0.18
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (258 bp):
ACATTGGACTTAAAAATGATAAGGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGGCTTAA
AATGATAAAGGTGCCAATATCTGATTCAAGGCAAACGATATCGGACTTAAAGATGACAAAGGTGT
CAATGTGCTGATTCAAGGCCAACAACATTGGACGTAAAGATGAGAAGAATGCTAATGTGTTGATT
TAAGGCCAACGACATTAGACTTAAAAATCAGAAGAATGCTAACATGCTAATTCAAAGCCAGCA
Found at i:993652 original size:104 final size:103
Alignment explanation
Indices: 993126--993883 Score: 544
Period size: 104 Copynumber: 7.3 Consensus size: 103
993116 AAGGGTGCCA
* *
993126 ATATGCTGATTCAAGGCCAACGACATTGGGCTTAAAAATGATAAAGGTGCCAATAT-TTGATTCA
1 ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTCA
* * * * * *
993190 AGGCTAGCGATATCGGATTTAAAGATGATAAAGGTGTCA
66 AGGCCAGCGATATTGGACTTAAAGATGAGAAAAGTG-CT
* * * * * * * * * *
993229 ATGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGA-GAAGAATGCTAATGTGTTGATTT
1 ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAG-GTGCCAATATGCTGATTC
* * * * *
993293 AAGGCCAGTGACATTAGACTTGAAGATCAGAAGAA-TGCT
65 AAGGCCAGCGATATTGGACTTAAAGATGAGAA-AAGTGCT
* * *** * * * *
993332 A-ACGTGCTAATTCAAGGCTAGTAACATTGGACTTAAAAATGGTAAGGGTGCCAATGTGCTAATT
1 ATA--TGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATT
* * * * * * *
993396 CAA-GCTAGCGACATTGGGCTTAAA-ATGATAAAGGTACCA
64 CAAGGCCAGCGATATTGGACTTAAAGATGAGAAAAGT-GCT
* * * * * * *
993435 ATATCCTGATTCAAGGCAAACGATATCGGACTT-AAAATGACAAAGGTGCTAATTTGCTGATTCA
1 ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTCA
* * * *
993499 AGGCCAACAACATTGGACGTAAAGATGAGAAGAA-TGCT
66 AGGCCAGCGATATTGGACTTAAAGATGAGAA-AAGTGCT
* * * * * * *
993537 AATGTGTTGATTTAAGGCCAACGACATTAGACTTAAAAATGATAAAAGTGCTAATATGTTGATTC
1 -ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTC
* *
993602 AAAGCCAGCGATATTGGACTTAAAGATGACAAAAGTGCCT
65 AAGGCCAGCGATATTGGACTTAAAGATGAGAAAAGTG-CT
* * * ** * *
993642 ACATGCTGATTCAAGGCCAGCGACATTGGGCTTAATGATGGTAAAGGCGCCAATATGCTGATTCA
1 ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTCA
* * * * * *
993707 TGACCAGCGATATTGAACTTTAAGATAAGAAGAGTGCT
66 AGGCCAGCGATATTGGACTTAAAGATGAGAAAAGTGCT
* * * ** * * * * * *
993745 AGTGTGTTGATTCAAGGCTAGTGATATTGGACATAAAGATGGTAAAAGTGCCAATATGCTGATTT
1 A-TATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTC
* * * *
993810 AAGGCCAACGATATTGGACTTTAAGAT-AAAAAGAGTGCCA
65 AAGGCCAGCGATATTGGACTTAAAGATGAGAAA-AGTG-CT
* *
993850 ATGTGCTAATTCAAGGCCAACGACATTGGACTTA
1 ATATGCTGATTCAAGGCCAACGACATTGGACTTA
993884 GAAAGAGACG
Statistics
Matches: 503, Mismatches: 133, Indels: 37
0.75 0.20 0.05
Matches are distributed among these distances:
101 27 0.05
102 48 0.10
103 103 0.20
104 318 0.63
105 7 0.01
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (103 bp):
ATATGCTGATTCAAGGCCAACGACATTGGACTTAAAAATGATAAAGGTGCCAATATGCTGATTCA
AGGCCAGCGATATTGGACTTAAAGATGAGAAAAGTGCT
Found at i:994021 original size:34 final size:34
Alignment explanation
Indices: 993953--994364 Score: 345
Period size: 32 Copynumber: 12.6 Consensus size: 34
993943 GAAGGAGATG
* *
993953 CCACCGACTTGTGTGGGCTTTTG--AGAGGGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* *
993985 CCACTGACTTGTGTGGGCTTTTGAAAAAGGGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
** * *
994019 CCACCGACTTGGGTGGGC-TTTAAAAAAGGGTTG
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* *
994052 CCACTGACTTTTGTGGGCTTTTG--AAAGGGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* * **
994084 CCACCGATTTATGTGGGCTTTAGAAAGGGGGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* *
994118 CCACTGACTTATGTGGGC-TTT-AAAAA-GGTTG
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
** * * *
994149 CCATTGACTTATATGAGCTTTTG--AAAGGGTTT
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* *
994181 TCACCGACTTATGTGGGCTTTAGAAAAAGGGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* *
994215 CCACTGACTTGTGTGGGC-TTT-AAAAA-GGTTA
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* * * *
994246 CCACCGACTTATGTGGGC-TTTAAAAAAAGATTG
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
** * * *
994279 CCACTAACTTATGTGGGC-TTTAAAAAAGGGGCTG
1 CCACCGACTTATGTGGGCTTTTGAAAAA-GGGTTA
* *
994313 CCACCGACTTGTGTGGGCTTTTG--AAAGGGTTG
1 CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
* * *
994345 CTACCGACTTGTGTGTGCTT
1 CCACCGACTTATGTGGGCTT
994365 AAAAAGGGTG
Statistics
Matches: 312, Mismatches: 54, Indels: 28
0.79 0.14 0.07
Matches are distributed among these distances:
31 46 0.15
32 109 0.35
33 63 0.20
34 91 0.29
35 3 0.01
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.32
Consensus pattern (34 bp):
CCACCGACTTATGTGGGCTTTTGAAAAAGGGTTA
Found at i:994186 original size:97 final size:97
Alignment explanation
Indices: 993951--994333 Score: 417
Period size: 97 Copynumber: 3.9 Consensus size: 97
993941 TAGAAGGAGA
* * * * * * * *
993951 TGCCACCGACTTGTGTGGGCTTTTGAGAGGGTTACCACTGACTTGTGTGGGCTTTTGAAAAAGGG
1 TGCCACTGACTTATATGAGCTTTTGAAAGGGTTACCACCGACTTATGTGGGCTTTAGAAAAAGGG
* *
994016 TTACCACCGACTTGGGTGGGCTTTAAAAAAGGGT
66 TTACCACTGACTTGTGTGGGCTTT-AAAAA-GGT
* * * * **
994050 TGCCACTGACTTTTGTGGGCTTTTGAAAGGGTTACCACCGATTTATGTGGGCTTTAGAAAGGGGG
1 TGCCACTGACTTATATGAGCTTTTGAAAGGGTTACCACCGACTTATGTGGGCTTTAGAAAAAGGG
*
994115 TTACCACTGACTTATGTGGGCTTTAAAAAGGT
66 TTACCACTGACTTGTGTGGGCTTTAAAAAGGT
* **
994147 TGCCATTGACTTATATGAGCTTTTGAAAGGGTTTTCACCGACTTATGTGGGCTTTAGAAAAAGGG
1 TGCCACTGACTTATATGAGCTTTTGAAAGGGTTACCACCGACTTATGTGGGCTTTAGAAAAAGGG
994212 TTACCACTGACTTGTGTGGGCTTTAAAAAGGT
66 TTACCACTGACTTGTGTGGGCTTTAAAAAGGT
* * * * ** * * * **
994244 TACCACCGACTTATGTGGGCTTTAAAAAAAGATTGCCACTAACTTATGTGGGCTTTA-AAAAAGG
1 TGCCACTGACTTATATGAGCTTT-TGAAAGGGTTACCACCGACTTATGTGGGCTTTAGAAAAA-G
* * *
994308 GGCTGCCACCGACTTGTGTGGGCTTT
64 GGTTACCACTGACTTGTGTGGGCTTT
994334 TGAAAGGGTT
Statistics
Matches: 244, Mismatches: 38, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
97 113 0.46
98 54 0.22
99 77 0.32
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (97 bp):
TGCCACTGACTTATATGAGCTTTTGAAAGGGTTACCACCGACTTATGTGGGCTTTAGAAAAAGGG
TTACCACTGACTTGTGTGGGCTTTAAAAAGGT
Found at i:994372 original size:31 final size:32
Alignment explanation
Indices: 993951--994378 Score: 360
Period size: 34 Copynumber: 13.2 Consensus size: 32
993941 TAGAAGGAGA
** *
993951 TGCCACCGACTTGTGTGGGCTTTTGAGAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
* *
993983 TACCACTGACTTGTGTGGGCTTTTGAAAAAGGGT
1 TGCCACCGACTTGTGTGGGC-TTT-AAAAAGGGT
* *
994017 TACCACCGACTTGGGTGGGCTTTAAAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTT-AAAAAGGGT
* * **
994050 TGCCACTGACTTTTGTGGGCTTTTGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
* * * *
994082 TACCACCGATTTATGTGGGCTTTAGAAAGGGGGT
1 TGCCACCGACTTGTGTGGGCTTTA-AAA-AGGGT
* * *
994116 TACCACTGACTTATGTGGGCTTTAAAAA-GGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
** * * * **
994147 TGCCATTGACTTATATGAGCTTTTGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
** *
994179 TTTCACCGACTTATGTGGGCTTTAGAAAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTT--AAAAAGGGT
* *
994213 TACCACTGACTTGTGTGGGCTTTAAAAA-GGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
* * * *
994244 TACCACCGACTTATGTGGGCTTTAAAAAAAGAT
1 TGCCACCGACTTGTGTGGGCTTT-AAAAAGGGT
** * *
994277 TGCCACTAACTTATGTGGGCTTTAAAAAAGGGGC
1 TGCCACCGACTTGTGTGGGCTTT-AAAAA-GGGT
**
994311 TGCCACCGACTTGTGTGGGCTTTTGAAAGGGT
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
* *
994343 TGCTACCGACTTGTGTGTGC-TTAAAAAGGG-
1 TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
994373 TGCCAC
1 TGCCAC
994379 GAAGTTGTGG
Statistics
Matches: 324, Mismatches: 62, Indels: 22
0.79 0.15 0.05
Matches are distributed among these distances:
30 5 0.02
31 57 0.18
32 95 0.29
33 70 0.22
34 97 0.30
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (32 bp):
TGCCACCGACTTGTGTGGGCTTTAAAAAGGGT
Found at i:994393 original size:28 final size:28
Alignment explanation
Indices: 994362--994429 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 28
994352 CTTGTGTGTG
* *
994362 CTTAAAAAGGGTGCCACGAAGTTGTGGA
1 CTTAAAAAGGGTGCCACGAAGTAGTGAA
*** *
994390 CTTAAAAAAAATGCCACTAAGTAGTGAA
1 CTTAAAAAGGGTGCCACGAAGTAGTGAA
994418 CTTTAAAAAGGG
1 C-TTAAAAAGGG
994430 GTACCATGGA
Statistics
Matches: 30, Mismatches: 9, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
28 23 0.77
29 7 0.23
ACGTcount: A:0.41, C:0.13, G:0.24, T:0.22
Consensus pattern (28 bp):
CTTAAAAAGGGTGCCACGAAGTAGTGAA
Found at i:994399 original size:30 final size:30
Alignment explanation
Indices: 994365--994791 Score: 187
Period size: 30 Copynumber: 14.1 Consensus size: 30
994355 GTGTGTGCTT
*
994365 AAAAAGGGTGCCACGAAGTTGTGGACTTAA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
* ** * * *
994395 AAAAA--ATGCCACTAAGTAGTGAACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
* * * *
994423 AAAAGGGGTACCATGGAGTTATGGACTTTGAA
1 AAAAAGGGTGCCACGGAGTTGTGGAC-TT-AA
* * * *
994455 GTAAAA-GGTGCTA-GGAGTTGTGGGCGTTTTTA
1 -AAAAAGGGTGCCACGGAGTTGTGGAC---TTAA
* ** *
994487 GAAAACAGTGCCACGGAGTTGTGAACTTTTATAA
1 AAAAAGGGTGCCACGGAGTTGTGGAC---T-TAA
* * * *
994521 AAAAAGGGGTACCATGAAGTTGTGGACTT-T
1 AAAAA-GGGTGCCACGGAGTTGTGGACTTAA
* * *
994551 ACAAA-GGTGCCATGGAGTTGTGGACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
*
994580 AAAAAGGGTGCCACGGAGTTATGGACTT--
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
* **
994608 -AAAAGGGTGCCACGGAGTTATAAACTTTGAA
1 AAAAAGGGTGCCACGGAGTTGTGGAC-TT-AA
*
994639 GAAAAA-GGTGCCACGGAGTTGT-GAGCTT-T
1 -AAAAAGGGTGCCACGGAGTTGTGGA-CTTAA
* * *
994668 AAAAAGGAGTGTCATGGAGTTGTGGACTTTA
1 AAAAAGG-GTGCCACGGAGTTGTGGACTTAA
* ** * *
994699 AAAAGGGGTGCCATAGAGTTGTAGACTTTGGA
1 AAAAAGGGTGCCACGGAGTTGTGGAC-TT-AA
* *** *
994731 AAAAA-GGTCCCATAAAGTTGTGGACTTTA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
* *
994760 AAAAAGGGTGCCACAGAGTTGTAGACTTAA
1 AAAAAGGGTGCCACGGAGTTGTGGACTTAA
994790 AA
1 AA
994792 GGGATGCCAT
Statistics
Matches: 303, Mismatches: 67, Indels: 54
0.71 0.16 0.13
Matches are distributed among these distances:
27 23 0.08
28 49 0.16
29 11 0.04
30 95 0.31
31 47 0.16
32 34 0.11
33 23 0.08
34 6 0.02
35 15 0.05
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (30 bp):
AAAAAGGGTGCCACGGAGTTGTGGACTTAA
Found at i:994649 original size:89 final size:88
Alignment explanation
Indices: 994553--994800 Score: 293
Period size: 89 Copynumber: 2.8 Consensus size: 88
994543 TGGACTTTAC
*
994553 AAAGGTGCCATGGAGTTGTGGACTTTAAAAAAGGGTGCCACGGAGTTATGGACTTAAAAGGGTGC
1 AAAGGTGCCATGGAGTTGTGGACTTTAAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGC
*
994618 CACGGAGTTATAAACTTTGAAGAA
66 CACAGAGTTATAAACTTTGAA-AA
* * *
994642 AAAGGTGCCACGGAGTTGT-GAGCTTT-AAAAAGGAGTGTCATGGAGTTGTGGACTTTAAAAAGG
1 AAAGGTGCCATGGAGTTGTGGA-CTTTAAAAAAGG-GTGCCACGGAGTTGTGGAC-TT-AAAA-G
* * * *
994705 GGTGCCATAGAGTTGTAGACTTTGGAAA
61 GGTGCCACAGAGTTATAAACTTTGAAAA
* ** * *
994733 AAAGGTCCCATAAAGTTGTGGACTTTAAAAAAGGGTGCCACAGAGTTGTAGACTTAAAAGGGATG
1 AAAGGTGCCATGGAGTTGTGGACTTTAAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGG-TG
994798 CCA
65 CCA
994801 TTGAGTCATG
Statistics
Matches: 134, Mismatches: 17, Indels: 16
0.80 0.10 0.10
Matches are distributed among these distances:
88 12 0.09
89 47 0.35
90 4 0.03
91 40 0.30
92 31 0.23
ACGTcount: A:0.33, C:0.12, G:0.30, T:0.24
Consensus pattern (88 bp):
AAAGGTGCCATGGAGTTGTGGACTTTAAAAAAGGGTGCCACGGAGTTGTGGACTTAAAAGGGTGC
CACAGAGTTATAAACTTTGAAAA
Found at i:995683 original size:33 final size:34
Alignment explanation
Indices: 995646--995733 Score: 103
Period size: 33 Copynumber: 2.7 Consensus size: 34
995636 TTGACAAAAG
995646 GGTGATACTATTTGA-TTTATTTCTAACAAGAAA
1 GGTGATACTATTTGAGTTTATTTCTAACAAGAAA
*
995679 GGTGATA-TGATTT-AGTTTATTTCTGACAAGAAA
1 GGTGATACT-ATTTGAGTTTATTTCTAACAAGAAA
* * *
995712 AGTGATACGATTTG-GTTCATTT
1 GGTGATACTATTTGAGTTTATTT
995734 TCAACAAAAC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
32 2 0.04
33 45 0.96
ACGTcount: A:0.32, C:0.08, G:0.19, T:0.41
Consensus pattern (34 bp):
GGTGATACTATTTGAGTTTATTTCTAACAAGAAA
Found at i:998409 original size:31 final size:32
Alignment explanation
Indices: 998345--998420 Score: 111
Period size: 31 Copynumber: 2.4 Consensus size: 32
998335 ATTTGCTTAC
998345 ATGTATCGATAC-ATTGGGTTTAAAAACCCAGA
1 ATGTATCGATACAATTGGG-TTAAAAACCCAGA
* *
998377 ATGTATCGATACAATTGGG-TCAAAGCCCAGA
1 ATGTATCGATACAATTGGGTTAAAAACCCAGA
998408 ATGTATCGATACA
1 ATGTATCGATACA
998421 TTTTCATTCC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
31 23 0.56
32 12 0.29
33 6 0.15
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (32 bp):
ATGTATCGATACAATTGGGTTAAAAACCCAGA
Found at i:998856 original size:35 final size:35
Alignment explanation
Indices: 998816--999158 Score: 291
Period size: 35 Copynumber: 9.9 Consensus size: 35
998806 GGTGTCTACA
* * * *
998816 CATCATCGTTTGGCTGTATCTGGCCAAACTCTTTC
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* * *
998851 CATCATCGTTTGACTCTATCTGGTTAAA-TGCTTTC
1 CATCATCGTTTGACTATATCTAGTCAAACT-CTTTC
* * *
998886 CATCATCGTTTGACTCTATCTAGTCAAACTTTTTT
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* * * * * *
998921 TAACATTGTTT-AGCAATATCTAGTTAGACTCTTT-
1 CATCATCGTTTGA-CTATATCTAGTCAAACTCTTTC
** * **
998955 CATCATCGTTTGGTTGTATCCGGTCAAACTCTTT-
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* * * *
998989 CATCATCATTTGACTGTATCAAGTCAAACTCTTTT
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* * * *
999024 CATCATCATTTAACTATTTCTAGTCAAACTTTTTC
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* *
999059 CATCATCGTTTGTCTATTTCTAGTCAAACTCTTTC
1 CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
* * * *
999094 CATCATCGTTTGACTTTAT-TTGATGAAACTCTTTT
1 CATCATCGTTTGACTATATCTAG-TCAAACTCTTTC
* *
999129 TATCATCGTTTGACTTTATCTAGTCAAACT
1 CATCATCGTTTGACTATATCTAGTCAAACT
999159 TTTTTACCTT
Statistics
Matches: 250, Mismatches: 51, Indels: 14
0.79 0.16 0.04
Matches are distributed among these distances:
34 55 0.22
35 192 0.77
36 3 0.01
ACGTcount: A:0.23, C:0.22, G:0.11, T:0.43
Consensus pattern (35 bp):
CATCATCGTTTGACTATATCTAGTCAAACTCTTTC
Found at i:999315 original size:46 final size:45
Alignment explanation
Indices: 999148--999316 Score: 142
Period size: 48 Copynumber: 3.6 Consensus size: 45
999138 TTGACTTTAT
* * *
999148 CTAGTCAAACT-TTTTTACCTTATTTGACTGTATTAGCATTAGGAC
1 CTAGTCAAACTCTTTTCACCTCATTTGACTGTATTGGCATTA-GAC
* * * * * *
999193 CTAGTCAAGCTCTTTCTCATCCTCGTTTAATTATGTTGGCATTAAGAC
1 CTAGTCAAACTCTTT-TCA-CCTCATTTGACTGTATTGGCATT-AGAC
* * ** * *
999241 CTAGTCAAACTCTTCTCACTATTGTTTGACTGTATTGGCGTTAGTC
1 CTAGTCAAACTCTTTTCAC-CTCATTTGACTGTATTGGCATTAGAC
999287 CTAGTCAAACTCTTTTCATCCTCATTTGAC
1 CTAGTCAAACTCTTTTCA-CCTCATTTGAC
999317 ATGATGGTTC
Statistics
Matches: 95, Mismatches: 23, Indels: 11
0.74 0.18 0.09
Matches are distributed among these distances:
45 10 0.11
46 31 0.33
47 21 0.22
48 32 0.34
49 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.14, T:0.41
Consensus pattern (45 bp):
CTAGTCAAACTCTTTTCACCTCATTTGACTGTATTGGCATTAGAC
Found at i:999542 original size:78 final size:78
Alignment explanation
Indices: 999406--999555 Score: 171
Period size: 78 Copynumber: 1.9 Consensus size: 78
999396 TCATTCCCTG
* * * *
999406 TCAACCTTTTTATCCTTTGTTTGCCTGTCGACTTAGTCCTAAGTGAATCTTTTAATCCTAAATTG
1 TCAACCTTTTTATCCTTTGTCTACCTGTCGACTTAGTCATAAGTAAATCTTTTAATCCT-AATTG
999471 ACTTGTTGACTTAA
65 ACTTGTTGACTTAA
* ** **
999485 TCAACC-TTTTATCCTTTGTCTACTTGTC-AGCTTAGTCATGGGTAAATCCTTTT-ATCCTTTTT
1 TCAACCTTTTTATCCTTTGTCTACCTGTCGA-CTTAGTCATAAGTAAAT-CTTTTAATCCTAATT
999547 GACTTGTTG
64 GACTTGTTG
999556 GTTCATTCTT
Statistics
Matches: 60, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
77 12 0.20
78 37 0.62
79 11 0.18
ACGTcount: A:0.20, C:0.21, G:0.13, T:0.46
Consensus pattern (78 bp):
TCAACCTTTTTATCCTTTGTCTACCTGTCGACTTAGTCATAAGTAAATCTTTTAATCCTAATTGA
CTTGTTGACTTAA
Found at i:1000917 original size:8 final size:8
Alignment explanation
Indices: 1000901--1000942 Score: 66
Period size: 8 Copynumber: 5.2 Consensus size: 8
1000891 CAAAACTCAA
1000901 TTGATTTT
1 TTGATTTT
*
1000909 TTAATTTT
1 TTGATTTT
1000917 TTGATTTT
1 TTGATTTT
*
1000925 TTGACTTT
1 TTGATTTT
1000933 TTGATTTT
1 TTGATTTT
1000941 TT
1 TT
1000943 TTCAAAAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
8 30 1.00
ACGTcount: A:0.14, C:0.02, G:0.10, T:0.74
Consensus pattern (8 bp):
TTGATTTT
Found at i:1001071 original size:7 final size:7
Alignment explanation
Indices: 1001059--1001090 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
1001049 AAGATTTTAA
1001059 TTTAATT
1 TTTAATT
1001066 TTTAATT
1 TTTAATT
1001073 TTTAATT
1 TTTAATT
1001080 TTTAATT
1 TTTAATT
1001087 TTTA
1 TTTA
1001091 CAATTTAGTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (7 bp):
TTTAATT
Found at i:1001233 original size:12 final size:12
Alignment explanation
Indices: 1001195--1001224 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1001185 TGTCCTGAAT
1001195 TGGTGAGTCATA
1 TGGTGAGTCATA
*
1001207 TGGTGAGTCGTA
1 TGGTGAGTCATA
1001219 TGGTGA
1 TGGTGA
1001225 ATCAAATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.07, G:0.40, T:0.33
Consensus pattern (12 bp):
TGGTGAGTCATA
Found at i:1002908 original size:155 final size:155
Alignment explanation
Indices: 1002687--1003112 Score: 522
Period size: 155 Copynumber: 2.7 Consensus size: 155
1002677 TTTTCATGTT
* * * * *
1002687 AAAGGTATGCCTATAAGGGCATTTTCGTATTTTTTCTAGAACCGAGTCCTAGATGTCACCGAGTC
1 AAAGGTAT-CCCATAAGGGCATTTTCGTAATTTTTCTAGAA-CAAGTCTTAGTTGTCACCGAGTC
*
1002752 CGCTTTTATGCTGAAGGTGGGTATTTAGGATAGGTTCATCCCATCTATAACCCTTTTTAAGTCCT
64 CGCTTTTATGCTGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAACCCTTTTTAAGTCCT
1002817 TTAGAGGTATCAAGCACTTCTAAGTC-
129 TTAGAGGTATCAAGCACTTCTAAGTCG
* * *
1002843 AAAGGTATCCCAT-AGGGTATTTTCGTAATTTTCCTAGAATCAAGTCTTACGTTGTCA-CTAGGT
1 AAAGGTATCCCATAAGGGCATTTTCGTAATTTTTCTAGAA-CAAGTCTTA-GTTGTCACCGA-GT
* * * *
1002906 CCGTTTTTATGCCGAAAGTGGATATTTAGGATAGGTTCATCCCATCTATCACCCTTTTTAAGTCC
63 CCGCTTTTATGCTGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAACCCTTTTTAAGTCC
* * *
1002971 TTTAGGGGTATCAGGCATTTCTAAGTCG
128 TTTAGAGGTATCAAGCACTTCTAAGTCG
** * *
1002999 AAA-GTATCCCATAAGGGCATTTTTATAATTTTTTTAGAACTAAGT-TCAAGGTTGTCACCGAGT
1 AAAGGTATCCCATAAGGGCATTTTCGTAATTTTTCTAGAAC-AAGTCT-TA-GTTGTCACCGAGT
* * *
1003062 CTGCTTATATG-TCGAAAGTGGGTATTTAGGATAGATTCATCCCATCTATAA
63 CCGCTTTTATGCT-GAAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAA
1003113 TTCTTTCCAA
Statistics
Matches: 230, Mismatches: 32, Indels: 16
0.83 0.12 0.06
Matches are distributed among these distances:
154 32 0.14
155 107 0.47
156 89 0.39
157 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (155 bp):
AAAGGTATCCCATAAGGGCATTTTCGTAATTTTTCTAGAACAAGTCTTAGTTGTCACCGAGTCCG
CTTTTATGCTGAAAGTGGGTATTTAGGATAGGTTCATCCCATCTATAACCCTTTTTAAGTCCTTT
AGAGGTATCAAGCACTTCTAAGTCG
Found at i:1006977 original size:22 final size:23
Alignment explanation
Indices: 1006952--1006994 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
1006942 AATCCCTAAT
1006952 AGATATTTGAAAATT-AAAAAGC
1 AGATATTTGAAAATTGAAAAAGC
*
1006974 AGATGTTTGAAAATTGAAAAA
1 AGATATTTGAAAATTGAAAAA
1006995 AAAAAATCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 14 0.74
23 5 0.26
ACGTcount: A:0.53, C:0.02, G:0.16, T:0.28
Consensus pattern (23 bp):
AGATATTTGAAAATTGAAAAAGC
Found at i:1007281 original size:24 final size:23
Alignment explanation
Indices: 1007256--1007307 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
1007246 ATAAGCTATA
*
1007256 AAAACATTCTCGTGAGAGGTTTT
1 AAAACATTCTCGTGAGAAGTTTT
*
1007279 -AAACATTCTTGTGAGAAGTTTT
1 AAAACATTCTCGTGAGAAGTTTT
1007301 AGAAACA
1 A-AAACA
1007308 AAATATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
22 20 0.80
24 5 0.20
ACGTcount: A:0.37, C:0.12, G:0.19, T:0.33
Consensus pattern (23 bp):
AAAACATTCTCGTGAGAAGTTTT
Found at i:1007285 original size:22 final size:22
Alignment explanation
Indices: 1007257--1007301 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
1007247 TAAGCTATAA
*
1007257 AAACATTCTCGTGAGAGGTTTT
1 AAACATTCTCGTGAGAAGTTTT
*
1007279 AAACATTCTTGTGAGAAGTTTT
1 AAACATTCTCGTGAGAAGTTTT
1007301 A
1 A
1007302 GAAACAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.38
Consensus pattern (22 bp):
AAACATTCTCGTGAGAAGTTTT
Found at i:1007834 original size:15 final size:15
Alignment explanation
Indices: 1007784--1007834 Score: 57
Period size: 16 Copynumber: 3.3 Consensus size: 15
1007774 TTGCAAACCC
*
1007784 AAATAATTTGAATACA
1 AAAT-ATTTGAATATA
*
1007800 AAATATTTTAAATATA
1 AAATA-TTTGAATATA
*
1007816 AAATATTTGAATTTA
1 AAATATTTGAATATA
1007831 AAAT
1 AAAT
1007835 GTTTTGGACT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
15 13 0.43
16 17 0.57
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (15 bp):
AAATATTTGAATATA
Found at i:1009607 original size:81 final size:80
Alignment explanation
Indices: 1009471--1009629 Score: 257
Period size: 81 Copynumber: 2.0 Consensus size: 80
1009461 AAAATGTAAG
1009471 GATTCCAACAACTAGATTATAAGATTTCATCTTTCATAAAGTAAGACATACGAGAT-AAAAAAAG
1 GATTCCAACAACTAGATTATAAGATTTCATCTTTCATAAAGTAAGACATACGAGATGAAAAAAAG
1009535 AATTACGACCAAAAT
66 AATTACGACCAAAAT
* ** *
1009550 GATTCCAACAACTAGATTTTATAAGGTTTCATCTTTCATAAAGTAAGATTTATGAGATGAAAAAA
1 GATTCCAACAACTAGA--TTATAAGATTTCATCTTTCATAAAGTAAGACATACGAGATGAAAAAA
1009615 AGAATTACGACCAAA
64 AGAATTACGACCAAA
1009630 CTTTCAAACA
Statistics
Matches: 73, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
79 16 0.22
81 36 0.49
82 21 0.29
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.28
Consensus pattern (80 bp):
GATTCCAACAACTAGATTATAAGATTTCATCTTTCATAAAGTAAGACATACGAGATGAAAAAAAG
AATTACGACCAAAAT
Found at i:1013871 original size:154 final size:153
Alignment explanation
Indices: 1013512--1013871 Score: 424
Period size: 149 Copynumber: 2.3 Consensus size: 153
1013502 CATCATTAAC
* * * *
1013512 AATCCTTTTAAGTTCTTTAGGGGTATTGGGTACTTTTACGTCGAAGGTATCCCTTAAGAGTATTT
1 AATCCTTTTAAGTCCTTTAGGGGTATCGGGTACTTCTACGTCGAAGGTATCCCTTAAGAGCATTT
* ** *
1013577 TTGTAATTTTCTTTTAGAATTGAGTCTTAGATTATCACCAGGTTCGCTTCTACACCAAAGGTGTA
66 TGGTAA-TTTCTTTTAGAACCGAGTCTTAGATTATCACCAGGTTCGCTTCTACACCAAAGGTGGA
1013642 CATTTAGGATAAATTCATCCTTTT
130 CATTTAGGATAAATTCATCCTTTT
* * *
1013666 -ATCCTTTTAAGCCCTTTAGGGGTGTCGGGTACTTCTACGTCGAAGGTATCCC-TAAGGGCATTT
1 AATCCTTTTAAGTCCTTTAGGGGTATCGGGTACTTCTACGTCGAAGGTATCCCTTAAGAGCATTT
* * * * ** * *
1013729 TGGTAA-TT-TTTTAGAACCGAGTCTTAGGTTGTCACC-GAGTTTGCTTTTATGCCTAAGGTGGG
66 TGGTAATTTCTTTTAGAACCGAGTCTTAGATTATCACCAG-GTTCGCTTCTACACCAAAGGTGGA
* **
1013791 TATTTAGGATAGGTTCATCCCATTTAT
130 CATTTAGGATAAATTCAT-CC-TTT-T
*
1013818 AATCCTTTTTAAGTCCTTTAGGGGTATCGGGTACTTCTATGTCGAAGGTATCCC
1 AATCC-TTTTAAGTCCTTTAGGGGTATCGGGTACTTCTACGTCGAAGGTATCCC
1013872 CTAGAGGCAT
Statistics
Matches: 175, Mismatches: 25, Indels: 12
0.83 0.12 0.06
Matches are distributed among these distances:
148 1 0.01
149 56 0.32
150 4 0.02
151 3 0.02
152 15 0.09
153 51 0.29
154 45 0.26
ACGTcount: A:0.23, C:0.17, G:0.21, T:0.39
Consensus pattern (153 bp):
AATCCTTTTAAGTCCTTTAGGGGTATCGGGTACTTCTACGTCGAAGGTATCCCTTAAGAGCATTT
TGGTAATTTCTTTTAGAACCGAGTCTTAGATTATCACCAGGTTCGCTTCTACACCAAAGGTGGAC
ATTTAGGATAAATTCATCCTTTT
Found at i:1016945 original size:20 final size:20
Alignment explanation
Indices: 1016920--1016996 Score: 154
Period size: 20 Copynumber: 3.9 Consensus size: 20
1016910 ATTTCACAAT
1016920 TTGTATCGATACATTCTTTA
1 TTGTATCGATACATTCTTTA
1016940 TTGTATCGATACATTCTTTA
1 TTGTATCGATACATTCTTTA
1016960 TTGTATCGATACATTCTTTA
1 TTGTATCGATACATTCTTTA
1016980 TTGTATCGATACATTCT
1 TTGTATCGATACATTCT
1016997 GGGTTTTACC
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 57 1.00
ACGTcount: A:0.25, C:0.16, G:0.10, T:0.49
Consensus pattern (20 bp):
TTGTATCGATACATTCTTTA
Found at i:1017124 original size:50 final size:50
Alignment explanation
Indices: 1016961--1017125 Score: 240
Period size: 50 Copynumber: 3.3 Consensus size: 50
1016951 CATTCTTTAT
*
1016961 TGTATCGATACATTCTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
1 TGTATCGATACATTTTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
* * *
1017011 TGTATCGATACATTATTCATTGTATCGATACATTTTGGGTTTTACCCAAA
1 TGTATCGATACATTTTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
* * * *
1017061 TTTATCCATACATTTTTTATTATATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCGATACATTTTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
* *
1017111 TGTATCAAAACATTT
1 TGTATCGATACATTT
1017126 CTCAATGTAT
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 102 1.00
ACGTcount: A:0.28, C:0.17, G:0.12, T:0.43
Consensus pattern (50 bp):
TGTATCGATACATTTTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
Found at i:1017144 original size:50 final size:49
Alignment explanation
Indices: 1016961--1017145 Score: 217
Period size: 50 Copynumber: 3.7 Consensus size: 49
1016951 CATTCTTTAT
* *
1016961 TGTATCGATACATTCTTTATTGTATCGATACATTCTGGGTTTTACCCAAA
1 TGTATCAATACATT-TTCATTGTATCGATACATTCTGGGTTTTACCCAAA
* *
1017011 TGTATCGATACATTATTCATTGTATCGATACATTTTGGGTTTTACCCAAA
1 TGTATCAATACATT-TTCATTGTATCGATACATTCTGGGTTTTACCCAAA
* * * * *
1017061 TTTATCCATACATTTTTTATTATATCGATACATTCTGGGTTTTACCCAGA
1 TGTATCAATACA-TTTTCATTGTATCGATACATTCTGGGTTTTACCCAAA
* * * *
1017111 TGTATCAAAACATTTCTCAATGTATCAAAACATTC
1 TGTATCAATACATTT-TCATTGTATCGATACATTC
1017146 AGGCATTTTT
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 3 0.03
50 111 0.96
51 2 0.02
ACGTcount: A:0.29, C:0.18, G:0.11, T:0.42
Consensus pattern (49 bp):
TGTATCAATACATTTTCATTGTATCGATACATTCTGGGTTTTACCCAAA
Found at i:1017144 original size:100 final size:100
Alignment explanation
Indices: 1016963--1017144 Score: 267
Period size: 100 Copynumber: 1.8 Consensus size: 100
1016953 TTCTTTATTG
* * * *
1016963 TATCGATACATTCTTTATTGTATCGATACATTCTGGGTTTTACCCAAATGTATCGATACATTATT
1 TATCCATACATTCTTTATTATATCGATACATTCTGGGTTTTACCCAAATGTATCAAAACATTATT
* * *
1017028 CATTGTATCGATACATTTTGGGTTTTACCCAAATT
66 CAATGTATCAAAACATTTTGGGTTTTACCCAAATT
* *
1017063 TATCCATACATTTTTTATTATATCGATACATTCTGGGTTTTACCCAGATGTATCAAAACATT-TC
1 TATCCATACATTCTTTATTATATCGATACATTCTGGGTTTTACCCAAATGTATCAAAACATTAT-
1017127 TCAATGTATCAAAACATT
65 TCAATGTATCAAAACATT
1017145 CAGGCATTTT
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
99 1 0.01
100 71 0.99
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.42
Consensus pattern (100 bp):
TATCCATACATTCTTTATTATATCGATACATTCTGGGTTTTACCCAAATGTATCAAAACATTATT
CAATGTATCAAAACATTTTGGGTTTTACCCAAATT
Found at i:1020467 original size:52 final size:52
Alignment explanation
Indices: 1020321--1020449 Score: 240
Period size: 52 Copynumber: 2.5 Consensus size: 52
1020311 CGAAATATGA
1020321 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
* *
1020373 AAATTTGCCTGCATGTATCGATACATTTTATAGGGTATCGATATATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
1020425 AAATTTGCCTGCATGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACA
1020450 AAGATCAGTG
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 75 1.00
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (52 bp):
AAATTTGCCTGCATGTATCGATACATTTTATAGTGTATCGATACATCTGGGC
Found at i:1020476 original size:13 final size:13
Alignment explanation
Indices: 1020458--1020482 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
1020448 CAAAGATCAG
1020458 TGTATCGATACAA
1 TGTATCGATACAA
1020471 TGTATCGATACA
1 TGTATCGATACA
1020483 TTTGAGTAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:1020564 original size:13 final size:13
Alignment explanation
Indices: 1020546--1020582 Score: 74
Period size: 13 Copynumber: 2.8 Consensus size: 13
1020536 AAAACTTATT
1020546 TATCGATACAATG
1 TATCGATACAATG
1020559 TATCGATACAATG
1 TATCGATACAATG
1020572 TATCGATACAA
1 TATCGATACAA
1020583 CACTTATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.41, C:0.16, G:0.14, T:0.30
Consensus pattern (13 bp):
TATCGATACAATG
Found at i:1021508 original size:20 final size:20
Alignment explanation
Indices: 1021483--1021607 Score: 88
Period size: 20 Copynumber: 5.8 Consensus size: 20
1021473 TTTTACCTAG
1021483 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
*
1021503 ATGTATCAATACATTCTGTCTTTTACCCA
1 ATGTATCGATACA-----T-TTTT---CA
1021532 GATGTATCGATACATTTTTCA
1 -ATGTATCGATACATTTTTCA
* * * *
1021553 ATGTATCAATACATGTATGA
1 ATGTATCGATACATTTTTCA
* *
1021573 ATGTATTGATACATTCTTCA
1 ATGTATCGATACATTTTTCA
*
1021593 ATGTATCGCTACATT
1 ATGTATCGATACATT
1021608 CTGTCTTTTT
Statistics
Matches: 81, Mismatches: 14, Indels: 20
0.70 0.12 0.17
Matches are distributed among these distances:
20 55 0.68
21 2 0.02
24 4 0.05
25 2 0.02
26 4 0.05
29 2 0.02
30 12 0.15
ACGTcount: A:0.30, C:0.17, G:0.11, T:0.42
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:1021548 original size:50 final size:49
Alignment explanation
Indices: 1021473--1021656 Score: 197
Period size: 50 Copynumber: 3.9 Consensus size: 49
1021463 AAAGTCACAT
1021473 TTTTACCTAGATGTATCGATACATTTTTCAATGTATCAATACATTCTGTC
1 TTTTACC-AGATGTATCGATACATTTTTCAATGTATCAATACATTCTGTC
1021523 TTTTACCCAGATGTATCGATACATTTTTCAATGTATCAATACA---TG--
1 TTTTA-CCAGATGTATCGATACATTTTTCAATGTATCAATACATTCTGTC
** * * **
1021568 ---TATGA-ATGTATTGATACATTCTTCAATGTATCGCTACATTCTGTC
1 TTTTACCAGATGTATCGATACATTTTTCAATGTATCAATACATTCTGTC
* * *
1021613 TTTTTACCAGATGCATCGATATATTTTTCAATGTATCGATACAT
1 -TTTTACCAGATGTATCGATACATTTTTCAATGTATCAATACAT
1021657 CTAGTTAAAA
Statistics
Matches: 110, Mismatches: 13, Indels: 22
0.76 0.09 0.15
Matches are distributed among these distances:
40 29 0.26
41 1 0.01
42 2 0.02
43 2 0.02
47 2 0.02
49 3 0.03
50 69 0.63
51 2 0.02
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.42
Consensus pattern (49 bp):
TTTTACCAGATGTATCGATACATTTTTCAATGTATCAATACATTCTGTC
Found at i:1021550 original size:24 final size:24
Alignment explanation
Indices: 1021469--1021550 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 24
1021459 TAAAAAAGTC
*
1021469 ACATTTTTACCTAGATGTATCGAT
1 ACATTTTTACCCAGATGTATCGAT
*
1021493 ACATTTTT---CA-ATGTATCAAT
1 ACATTTTTACCCAGATGTATCGAT
1021513 ACATTCTGTCTTTTACCCAGATGTATCGAT
1 ACA-----T-TTTTACCCAGATGTATCGAT
1021543 ACATTTTT
1 ACATTTTT
1021551 CAATGTATCA
Statistics
Matches: 45, Mismatches: 3, Indels: 20
0.66 0.04 0.29
Matches are distributed among these distances:
20 12 0.27
21 1 0.02
24 12 0.27
25 2 0.04
26 4 0.09
29 2 0.04
30 12 0.27
ACGTcount: A:0.28, C:0.18, G:0.10, T:0.44
Consensus pattern (24 bp):
ACATTTTTACCCAGATGTATCGAT
Found at i:1021639 original size:90 final size:90
Alignment explanation
Indices: 1021483--1021656 Score: 269
Period size: 90 Copynumber: 1.9 Consensus size: 90
1021473 TTTTACCTAG
* *
1021483 ATGTATCGATACATTTTTCAATGTATCAATACATTCTGTCTTTTACCCAGATGTATCGATACATT
1 ATGTATCGATACATTCTTCAATGTATCAATACATTCTGTCTTTTACCCAGATGCATCGATACATT
1021548 TTTCAATGTATCAATACATGTATGA
66 TTTCAATGTATCAATACATGTATGA
* ** *
1021573 ATGTATTGATACATTCTTCAATGTATCGCTACATTCTGTCTTTTTA-CCAGATGCATCGATATAT
1 ATGTATCGATACATTCTTCAATGTATCAATACATTCTGTC-TTTTACCCAGATGCATCGATACAT
*
1021637 TTTTCAATGTATCGATACAT
65 TTTTCAATGTATCAATACAT
1021657 CTAGTTAAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
90 71 0.93
91 5 0.07
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.42
Consensus pattern (90 bp):
ATGTATCGATACATTCTTCAATGTATCAATACATTCTGTCTTTTACCCAGATGCATCGATACATT
TTTCAATGTATCAATACATGTATGA
Found at i:1027757 original size:27 final size:26
Alignment explanation
Indices: 1027708--1027784 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 26
1027698 ATTTTTCACA
* *
1027708 ATCGGGGATACTCCAATCTCGTTAATC
1 ATCGGGGATACTCCAACCCCGTT-ATC
*
1027735 ATCGGGGATACTCCAACCCCGTTATT
1 ATCGGGGATACTCCAACCCCGTTATC
*
1027761 TTCGAGGGGATACTCCAACTCCCG
1 ATC--GGGGATACTCCAAC-CCCG
1027785 GCTTTATTCC
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
26 4 0.09
27 21 0.49
28 14 0.33
29 4 0.09
ACGTcount: A:0.23, C:0.30, G:0.21, T:0.26
Consensus pattern (26 bp):
ATCGGGGATACTCCAACCCCGTTATC
Found at i:1027827 original size:80 final size:79
Alignment explanation
Indices: 1027735--1028181 Score: 623
Period size: 80 Copynumber: 5.6 Consensus size: 79
1027725 CTCGTTAATC
1027735 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCCGGCTTTATTCCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAC-CCCGGCTTTATTCCTAAAA
1027800 TATTGATTTCTCATA
65 TATTGATTTCTCATA
* * *
1027815 ATCGGGGATACTCTAACCCCGTTA-TTTCTGAGGGGATACTCCGACCCCCAGCTTTATTCCTAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCC-AACCCCGGCTTTATTCCTAAA
1027879 ATATTGATTTCTCATA
64 ATATTGATTTCTCATA
*
1027895 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
1027960 ATTGATTTCTCATA
66 ATTGATTTCTCATA
* *
1027974 ATCAGGGGATACTCCAACCCCGTTA-TTTCTGAGGGGATACTCCAACTCCGGCTTTATTTCTAAA
1 ATC-GGGGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCCCGGCTTTATTCCTAAA
* *
1028038 ACATTAATTTCTCATA
64 ATATTGATTTCTCATA
* * * * * *
1028054 ATCGGGGATACTCCAATCCCGTTCTCTCCGAGGGGATACTCCAACCCTGGTTTTATTTCC--AAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA-TTCCTAAAA
** * *
1028117 TCATCAATTTTTCACA
65 T-ATTGATTTCTCATA
* *
1028133 ATCAGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCCCG
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCG
1028182 TTACTATCTC
Statistics
Matches: 328, Mismatches: 31, Indels: 17
0.87 0.08 0.05
Matches are distributed among these distances:
78 3 0.01
79 140 0.43
80 179 0.55
81 6 0.02
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (79 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCATA
Found at i:1027970 original size:159 final size:158
Alignment explanation
Indices: 1027735--1028180 Score: 628
Period size: 159 Copynumber: 2.8 Consensus size: 158
1027725 CTCGTTAATC
1027735 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACTCCCGGCTTTATTCCTAAAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAAC-CCCGGCTTTATTCCTAAAA
*
1027800 TATTGATTTCTCATAATCGGGGATACTCTAACCCCGTTATTTCTGAGGGGATACTCCGACCCCCA
65 TATTGATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCC-ACCCCCA
* *
1027865 GCTTTATTCCTAAAATATTGATTTCTCATA
129 GCTTTATTCCTAAAACATTAATTTCTCATA
*
1027895 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGACTTTATTCCTAAAAT
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
* * *
1027960 ATTGATTTCTCATAATCAGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACTCCGG
66 ATTGATTTCTCATAATC-GGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCACCCCCAG
*
1028025 CTTTATTTCTAAAACATTAATTTCTCATA
130 CTTTATTCCTAAAACATTAATTTCTCATA
* * * * * *
1028054 ATCGGGGATACTCCAATCCCGTTCTCTCCGAGGGGATACTCCAACCCTGGTTTTATTTCC--AAA
1 ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTA-TTCCTAAAA
** * * * * *
1028117 TCATCAATTTTTCACAATCAGGGATACTCCAACCCCGTTATTT-TCAAGGGGATACTCCAACCCC
65 T-ATTGATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCT-GAGGGGATACTCCACCCCC
1028181 GTTACTATCT
Statistics
Matches: 260, Mismatches: 22, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
157 1 0.00
158 44 0.17
159 128 0.49
160 87 0.33
ACGTcount: A:0.26, C:0.27, G:0.16, T:0.31
Consensus pattern (158 bp):
ATCGGGGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAAT
ATTGATTTCTCATAATCGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCACCCCCAGC
TTTATTCCTAAAACATTAATTTCTCATA
Found at i:1034624 original size:156 final size:154
Alignment explanation
Indices: 1034344--1034876 Score: 558
Period size: 156 Copynumber: 3.4 Consensus size: 154
1034334 GACGACAAAT
* * * * *
1034344 TAGGACTC-GATTCT-AGAAATTAAAAAAATACCCCTAAGGGATGCCTTCGATGTA-AAAGTATC
1 TAGGACTCAG-TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAGAAAGTA-C
* *** * *
1034406 CCTATACCCTTCAAAGACTTTAAAAAGGATTATAGATGGTATGAACCTATCCTAAATACCCACAT
64 CCAATACCCCAAAAAGAC-TTAAAAAGGATTATAAATAG-ATGAACCTATCCTAAATACCCACAT
* * *
1034471 TTGGCATGAAAGAAGACTCGGTGACAACC
127 TTGGCATAAAAGTAGAC-CAGTGACAACC
* * *
1034500 TAGGACTCAGTTTCTAAAAAATTACAAAAATACCCGTAGGGGATACCTTGGACGTAGAAA-TGCC
1 TAGGACTCAG-TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAGAAAGTACC
*
1034564 CAATACCCCAAAAAGACTTAAAAAGGATTATAAATATGATGAACCTATCCTAAATGCCCACATTT
65 CAATACCCCAAAAAGACTTAAAAAGGATTATAAATA-GATGAACCTATCCTAAATACCCACATTT
* * *
1034629 GGCACAAAAGTGGACCTAGTGATAACC
129 GGCATAAAAGTAGACC-AGTGACAACC
* ** * *
1034656 TAGGAGTC-GATTCTAAAAAATTATGAAAATGCCCCTAGGGGATATCTTCGACGTA-AAAGTACC
1 TAGGACTCAG-TTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAGAAAGTACC
* * * * * *
1034719 TAATACCCCTAAAGGACTTAAAGAAGGATTGTATATGAGATGAACCTATCCTAAATACCCACCTT
65 CAATACCCCAAAAAGACTTAAA-AAGGATTATAAAT-AGATGAACCTATCCTAAATACCCACATT
*
1034784 CGGCATAAAAGTAGACCCAGTGACAACC
128 TGGCATAAAAGTAGA-CCAGTGACAACC
* * * * *
1034812 TAGGACTCAGTTCTAGAAAATTACAAAAATTACCCTTAAGGGATACCTTTGACCTAG-AAGTACC
1 TAGGACTCAGTTCTAAAAAATTACAAAAA-TACCCCTAGGGGATACCTTCGACGTAGAAAGTACC
1034876 C
65 C
1034877 GACACTCCTA
Statistics
Matches: 312, Mismatches: 53, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
154 3 0.01
155 63 0.20
156 157 0.50
157 52 0.17
158 34 0.11
159 3 0.01
ACGTcount: A:0.38, C:0.21, G:0.17, T:0.24
Consensus pattern (154 bp):
TAGGACTCAGTTCTAAAAAATTACAAAAATACCCCTAGGGGATACCTTCGACGTAGAAAGTACCC
AATACCCCAAAAAGACTTAAAAAGGATTATAAATAGATGAACCTATCCTAAATACCCACATTTGG
CATAAAAGTAGACCAGTGACAACC
Found at i:1036035 original size:12 final size:12
Alignment explanation
Indices: 1036020--1036085 Score: 59
Period size: 12 Copynumber: 5.7 Consensus size: 12
1036010 TAGCTTGTTT
1036020 TCTATTTTCTTC
1 TCTATTTTCTTC
*
1036032 TCTATTTT-TCC
1 TCTATTTTCTTC
1036043 TCT-TTTTCTT-
1 TCTATTTTCTTC
*
1036053 TCATTTTTTCTTC
1 TC-TATTTTCTTC
*
1036066 TCTCTTTTC-TC
1 TCTATTTTCTTC
1036077 TCTAATTTT
1 TCT-ATTTT
1036086 TCCTACCCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
10 6 0.13
11 12 0.27
12 25 0.56
13 2 0.04
ACGTcount: A:0.08, C:0.24, G:0.00, T:0.68
Consensus pattern (12 bp):
TCTATTTTCTTC
Done.