Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold48
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4619657
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 18863 characters in sequence are not A, C, G, or T
File 24 of 27
Found at i:3803486 original size:4 final size:4
Alignment explanation
Indices: 3803477--3803506 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
3803467 TTCAAAAGCC
3803477 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
3803507 TTGGTTGAGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:3803839 original size:17 final size:17
Alignment explanation
Indices: 3803817--3803864 Score: 71
Period size: 17 Copynumber: 2.8 Consensus size: 17
3803807 GATCAATAAG
3803817 TTTAAATTATTTTAAAA
1 TTTAAATTATTTTAAAA
3803834 TTTAAA-TATTTTTAAAA
1 TTTAAATTA-TTTTAAAA
*
3803851 TTTTAATTATTTTA
1 TTTAAATTATTTTA
3803865 TATATATAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 2 0.07
17 24 0.86
18 2 0.07
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTAAATTATTTTAAAA
Found at i:3803861 original size:18 final size:17
Alignment explanation
Indices: 3803821--3803863 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
3803811 AATAAGTTTA
3803821 AATTA-TTTTAAAATTT
1 AATTATTTTTAAAATTT
*
3803837 AAATATTTTTAAAATTTT
1 AATTATTTTTAAAA-TTT
3803855 AATTATTTT
1 AATTATTTT
3803864 ATATATATAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 4 0.17
17 8 0.35
18 11 0.48
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
AATTATTTTTAAAATTT
Found at i:3804585 original size:15 final size:15
Alignment explanation
Indices: 3804565--3804595 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
3804555 CATATATATA
3804565 TATATATATTCAATT
1 TATATATATTCAATT
*
3804580 TATATATATTTAATT
1 TATATATATTCAATT
3804595 T
1 T
3804596 TATTTATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (15 bp):
TATATATATTCAATT
Found at i:3808717 original size:16 final size:15
Alignment explanation
Indices: 3808670--3808718 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 15
3808660 GATTTATTAA
3808670 AATAAAATAAAATTAT
1 AATAAAATAAAATT-T
* *
3808686 AATAGAATAATTATTT
1 AATAAAATAA-AATTT
3808702 AATCAAAATAAAATTT
1 AAT-AAAATAAAATTT
3808718 A
1 A
3808719 GTTGAACTAG
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
16 18 0.67
17 9 0.33
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (15 bp):
AATAAAATAAAATTT
Found at i:3809462 original size:50 final size:50
Alignment explanation
Indices: 3809388--3809494 Score: 142
Period size: 50 Copynumber: 2.1 Consensus size: 50
3809378 GCAAAGTGAT
* * * * * *
3809388 TTGACTATTCTTCACTAACCTTTGACAATCGAGAAGGGTGGTCGTAATTG
1 TTGACTACTCTTCACCAACCTTTGACAATCGAGAAAGGTGGCCATAATTA
* *
3809438 TTGACTACTCTTTACCAACTTTTGACAATCGAGAAAGGTGGCCATAATTA
1 TTGACTACTCTTCACCAACCTTTGACAATCGAGAAAGGTGGCCATAATTA
3809488 TTGACTA
1 TTGACTA
3809495 TTAGCATCTT
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.34
Consensus pattern (50 bp):
TTGACTACTCTTCACCAACCTTTGACAATCGAGAAAGGTGGCCATAATTA
Found at i:3809758 original size:19 final size:19
Alignment explanation
Indices: 3809734--3809770 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
3809724 GGTTGTCGAT
*
3809734 GCACTATTCACGTATATGA
1 GCACTATTCACATATATGA
3809753 GCACTATTCACATATATG
1 GCACTATTCACATATATG
3809771 GTTACTGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.22, G:0.14, T:0.32
Consensus pattern (19 bp):
GCACTATTCACATATATGA
Found at i:3813870 original size:50 final size:50
Alignment explanation
Indices: 3813792--3813975 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 50
3813782 AAAGTGATTA
* * * *
3813792 GACTATTCTTCACAAACCTTTAATAATCGAGAAAAGTAACCGTAATTGTT
1 GACTATTCTTCACCAACCTTTGACAATCGAGAGAAGTAACCGTAATTGTT
* * * * * ** *
3813842 AACTATTCTTCATCAATCTTTGACAATCGAGTGAGGTAGTCATAATTGTT
1 GACTATTCTTCACCAACCTTTGACAATCGAGAGAAGTAACCGTAATTGTT
* * * * *
3813892 GACTATTTTTTACCAACCTTTGATAATCAAGAGAAGTGACCGTAATTGTT
1 GACTATTCTTCACCAACCTTTGACAATCGAGAGAAGTAACCGTAATTGTT
* * *
3813942 GACTATTCTTGACCAACTTTTGACAATCAAGAGA
1 GACTATTCTTCACCAACCTTTGACAATCGAGAGA
3813976 GGTGGTTGTA
Statistics
Matches: 105, Mismatches: 29, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
50 105 1.00
ACGTcount: A:0.34, C:0.17, G:0.15, T:0.34
Consensus pattern (50 bp):
GACTATTCTTCACCAACCTTTGACAATCGAGAGAAGTAACCGTAATTGTT
Found at i:3813965 original size:100 final size:100
Alignment explanation
Indices: 3813792--3813998 Score: 254
Period size: 100 Copynumber: 2.1 Consensus size: 100
3813782 AAAGTGATTA
* *
3813792 GACTATTCTTCACAAACCTTTAATAATCGAGAAAAGTAACCGTAATTGTTAACTATTCTTCATCA
1 GACTATTCTTCACAAACCTTTAATAATCAAGAAAAGTAACCGTAATTGTTAACTATTCTTCACCA
* *
3813857 ATCTTTGACAATCGAGTGAGGTAGTCATAATTGTT
66 ATCTTTGACAATCAAGAGAGGTAGTCATAATTGTT
* * * * * * * *
3813892 GACTATTTTTTACCAACCTTTGATAATCAAGAGAAGTGACCGTAATTGTTGACTATTCTTGACCA
1 GACTATTCTTCACAAACCTTTAATAATCAAGAAAAGTAACCGTAATTGTTAACTATTCTTCACCA
* **
3813957 A-CTTTTGACAATCAAGAGAGGTGGTTGTAATTGTT
66 ATC-TTTGACAATCAAGAGAGGTAGTCATAATTGTT
*
3813992 AACTATT
1 GACTATT
3813999 AGCATCTCAA
Statistics
Matches: 90, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
99 1 0.01
100 89 0.99
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (100 bp):
GACTATTCTTCACAAACCTTTAATAATCAAGAAAAGTAACCGTAATTGTTAACTATTCTTCACCA
ATCTTTGACAATCAAGAGAGGTAGTCATAATTGTT
Found at i:3813987 original size:50 final size:50
Alignment explanation
Indices: 3813832--3813998 Score: 174
Period size: 50 Copynumber: 3.3 Consensus size: 50
3813822 GAAAAGTAAC
* * * *
3813832 CGTAATTGTTAACTATTCTTCATCAA-TCTTTGACAATCGAGTGAGGTAGT
1 CGTAATTGTTAACTATTCTTCACCAACT-TTTGACAATCAAGAGAGGTGGT
* * * * * * * **
3813882 CATAATTGTTGACTATTTTTTACCAACCTTTGATAATCAAGAGAAGTGAC
1 CGTAATTGTTAACTATTCTTCACCAACTTTTGACAATCAAGAGAGGTGGT
* *
3813932 CGTAATTGTTGACTATTCTTGACCAACTTTTGACAATCAAGAGAGGTGGT
1 CGTAATTGTTAACTATTCTTCACCAACTTTTGACAATCAAGAGAGGTGGT
*
3813982 TGTAATTGTTAACTATT
1 CGTAATTGTTAACTATT
3813999 AGCATCTCAA
Statistics
Matches: 93, Mismatches: 23, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
50 93 1.00
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (50 bp):
CGTAATTGTTAACTATTCTTCACCAACTTTTGACAATCAAGAGAGGTGGT
Found at i:3815036 original size:17 final size:17
Alignment explanation
Indices: 3815015--3815061 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
3815005 AAAATATTTT
3815015 AATAATATATTTTTAAA
1 AATAATATATTTTTAAA
* * *
3815032 TATAATTTA-ATTTAAA
1 AATAATATATTTTTAAA
3815048 AATAA-ATATTTTTA
1 AATAATATATTTTTA
3815062 TTTATTCATT
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
15 2 0.09
16 14 0.61
17 7 0.30
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
AATAATATATTTTTAAA
Found at i:3816749 original size:19 final size:19
Alignment explanation
Indices: 3816695--3816750 Score: 51
Period size: 19 Copynumber: 2.8 Consensus size: 19
3816685 TTTAAATTTA
3816695 ATAATTTATGTATTTAATATT
1 ATAATTTA--TATTTAATATT
* *
3816716 ATAATTTTTATTTTAT-TAT
1 ATAATTTATATTTAATAT-T
3816735 ATAATATTATATTTAA
1 ATAAT-TTATATTTAA
3816751 AATTTTATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
18 1 0.03
19 13 0.45
20 8 0.28
21 7 0.24
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (19 bp):
ATAATTTATATTTAATATT
Found at i:3816755 original size:27 final size:27
Alignment explanation
Indices: 3816655--3816820 Score: 74
Period size: 27 Copynumber: 6.0 Consensus size: 27
3816645 CATCTGCTTA
* * *
3816655 AATATTACATATAAAGTCTTTATTATA-
1 AATATTATATTTAAAAT-TTTATTATAT
* *
3816682 AAGT-TTAAATTTAATAA-TTTATGTATTT
1 AA-TATTATATTTAA-AATTTTAT-TATAT
**
3816710 AATATTATAATTT-TTATTTTATTATAT
1 AATATTAT-ATTTAAAATTTTATTATAT
3816737 AATATTATATTTAAAATTTTA-TATA-
1 AATATTATATTTAAAATTTTATTATAT
* *
3816762 AATTTTAATATATTAAAAATATATATTATAT
1 AATATT-ATAT-TT-AAAAT-TTTATTATAT
* * * * *
3816793 ATGTATTATTTTTTATATTTTATAATAT
1 A-ATATTATATTTAAAATTTTATTATAT
3816821 TTTATTTTTT
Statistics
Matches: 105, Mismatches: 19, Indels: 29
0.69 0.12 0.19
Matches are distributed among these distances:
25 5 0.05
26 17 0.16
27 35 0.33
28 25 0.24
29 10 0.10
30 6 0.06
31 4 0.04
32 3 0.03
ACGTcount: A:0.42, C:0.01, G:0.02, T:0.54
Consensus pattern (27 bp):
AATATTATATTTAAAATTTTATTATAT
Found at i:3816811 original size:23 final size:24
Alignment explanation
Indices: 3816783--3816831 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
3816773 ATTAAAAATA
*
3816783 TATATTATAT-ATGTATTATTTTT
1 TATATTATATAATATATTATTTTT
* *
3816806 TATATTTTATAATATTTTATTTTT
1 TATATTATATAATATATTATTTTT
3816830 TA
1 TA
3816832 AGGTCTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
23 9 0.41
24 13 0.59
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (24 bp):
TATATTATATAATATATTATTTTT
Found at i:3817149 original size:22 final size:21
Alignment explanation
Indices: 3817114--3817157 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
3817104 TTTATGTTAA
**
3817114 TATAAAATTTTAAATAATTATT
1 TATAAAATAATAAA-AATTATT
*
3817136 TATAAAATAATAAAATTTATT
1 TATAAAATAATAAAAATTATT
3817157 T
1 T
3817158 TTATATTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
TATAAAATAATAAAAATTATT
Found at i:3817178 original size:20 final size:18
Alignment explanation
Indices: 3817153--3817190 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
3817143 TAATAAAATT
3817153 TATTTTTATATTAATATTTA
1 TATTTTTA-ATTAA-ATTTA
3817173 TATTTTTAATTAAATTTA
1 TATTTTTAATTAAATTTA
3817191 AATAAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 5 0.28
19 5 0.28
20 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (18 bp):
TATTTTTAATTAAATTTA
Found at i:3837876 original size:116 final size:116
Alignment explanation
Indices: 3837672--3837899 Score: 456
Period size: 116 Copynumber: 2.0 Consensus size: 116
3837662 CAATAAACTA
3837672 TACACTTAAATCAGCTCAGGATTAGCAAACTTTAATGTTTGTTAATATTTGGGTACATTGATTTC
1 TACACTTAAATCAGCTCAGGATTAGCAAACTTTAATGTTTGTTAATATTTGGGTACATTGATTTC
3837737 CAATGATTTGTCAACCTTACAATTTACCAGATCATTGTCATCAGATACACT
66 CAATGATTTGTCAACCTTACAATTTACCAGATCATTGTCATCAGATACACT
3837788 TACACTTAAATCAGCTCAGGATTAGCAAACTTTAATGTTTGTTAATATTTGGGTACATTGATTTC
1 TACACTTAAATCAGCTCAGGATTAGCAAACTTTAATGTTTGTTAATATTTGGGTACATTGATTTC
3837853 CAATGATTTGTCAACCTTACAATTTACCAGATCATTGTCATCAGATA
66 CAATGATTTGTCAACCTTACAATTTACCAGATCATTGTCATCAGATA
3837900 AACCCCACTA
Statistics
Matches: 112, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 112 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (116 bp):
TACACTTAAATCAGCTCAGGATTAGCAAACTTTAATGTTTGTTAATATTTGGGTACATTGATTTC
CAATGATTTGTCAACCTTACAATTTACCAGATCATTGTCATCAGATACACT
Found at i:3844671 original size:12 final size:12
Alignment explanation
Indices: 3844654--3844680 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
3844644 AAGAAGAGTG
3844654 GTGGTGGTGGTC
1 GTGGTGGTGGTC
3844666 GTGGTGGTGGTC
1 GTGGTGGTGGTC
3844678 GTG
1 GTG
3844681 TTGGCGGTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.07, G:0.59, T:0.33
Consensus pattern (12 bp):
GTGGTGGTGGTC
Found at i:3849473 original size:27 final size:27
Alignment explanation
Indices: 3849405--3849503 Score: 84
Period size: 28 Copynumber: 3.8 Consensus size: 27
3849395 ATTCAATAAA
* *
3849405 AAAAT-TTAAT-ATTAATATCAATATT
1 AAAATATTAATAATTTATATAAATATT
*
3849430 AAAATTATT-ATATATTTATATAAATTTT
1 AAAA-TATTAATA-ATTTATATAAATATT
*
3849458 AAAATATTAATAATTTATAT-TATA-T
1 AAAATATTAATAATTTATATAAATATT
*
3849483 -AAATTTTAATATATTTATATA
1 AAAATATTAATA-ATTTATATA
3849504 TTTTATTTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 13
0.76 0.08 0.16
Matches are distributed among these distances:
24 10 0.16
25 13 0.21
26 5 0.08
27 14 0.23
28 19 0.31
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (27 bp):
AAAATATTAATAATTTATATAAATATT
Found at i:3849484 original size:32 final size:33
Alignment explanation
Indices: 3849424--3849510 Score: 106
Period size: 32 Copynumber: 2.6 Consensus size: 33
3849414 TATTAATATC
*
3849424 AATATTAAAATTATTATATATTTATATAAATTTTAA
1 AATATTAATA-TATT-TATA-TTATATAAATTTTAA
3849460 AATATTAATA-ATTTATATTATATAAATTTTAA
1 AATATTAATATATTTATATTATATAAATTTTAA
* *
3849492 TATATTTATATATTT-TATT
1 AATATTAATATATTTATATT
3849511 TTTAATTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
32 27 0.57
33 8 0.17
34 3 0.06
36 9 0.19
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (33 bp):
AATATTAATATATTTATATTATATAAATTTTAA
Found at i:3849526 original size:23 final size:23
Alignment explanation
Indices: 3849468--3849548 Score: 78
Period size: 24 Copynumber: 3.6 Consensus size: 23
3849458 AAAATATTAA
* *
3849468 TAATTTATATTATA--TAAATTT
1 TAATTTATATTATATTTTATTTT
* *
3849489 TAATATATTTATATATTTTATTTT
1 TAATTTATAT-TATATTTTATTTT
3849513 TAATTTATATTATATTTTATATTT
1 TAATTTATATTATATTTTAT-TTT
*
3849537 TATTTTA-ATTAT
1 TAATTTATATTAT
3849549 TCTATTTATA
Statistics
Matches: 49, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
21 8 0.16
22 4 0.08
23 15 0.31
24 22 0.45
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (23 bp):
TAATTTATATTATATTTTATTTT
Found at i:3849532 original size:7 final size:7
Alignment explanation
Indices: 3849492--3849539 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
3849482 TAAATTTTAA
3849492 TATATTT
1 TATATTT
3849499 ATATATTT
1 -TATATTT
3849507 TAT-TTT
1 TATATTT
3849513 TA-A-TT
1 TATATTT
3849518 TATA--T
1 TATATTT
3849523 TATATTT
1 TATATTT
3849530 TATATTT
1 TATATTT
3849537 TAT
1 TAT
3849540 TTTAATTATT
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
5 9 0.25
6 6 0.17
7 14 0.39
8 7 0.19
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (7 bp):
TATATTT
Found at i:3849561 original size:14 final size:13
Alignment explanation
Indices: 3849492--3849562 Score: 62
Period size: 12 Copynumber: 5.6 Consensus size: 13
3849482 TAAATTTTAA
3849492 TATATTTATATATTT
1 TATA-TTAT-TATTT
*
3849507 TAT-TT-TTAATT
1 TATATTATTATTT
3849518 TATATTA-TATTT
1 TATATTATTATTT
3849530 TATATT-TTATTT
1 TATATTATTATTT
*
3849542 TA-ATTATTCTATT
1 TATATTATTAT-TT
3849555 TATATTAT
1 TATATTAT
3849563 ATAATAATGT
Statistics
Matches: 47, Mismatches: 3, Indels: 13
0.75 0.05 0.21
Matches are distributed among these distances:
11 10 0.21
12 23 0.49
13 6 0.13
14 5 0.11
15 3 0.06
ACGTcount: A:0.31, C:0.01, G:0.00, T:0.68
Consensus pattern (13 bp):
TATATTATTATTT
Found at i:3849563 original size:30 final size:30
Alignment explanation
Indices: 3849500--3849564 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 30
3849490 AATATATTTA
*
3849500 TATATTTTATTTTTAATTTATATTATATTT
1 TATATTTTATTTTTAATTTATATTATATAT
*
3849530 TATATTTTA-TTTTAATTATTCTATT-TATAT
1 TATATTTTATTTTTAA-T-TTATATTATATAT
3849560 TATAT
1 TATAT
3849565 AATAATGTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
29 6 0.19
30 19 0.61
31 6 0.19
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (30 bp):
TATATTTTATTTTTAATTTATATTATATAT
Found at i:3850714 original size:15 final size:15
Alignment explanation
Indices: 3850696--3850738 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
3850686 ATAATTCTTT
3850696 AACATATATAATATA
1 AACATATATAATATA
*
3850711 AACATAGATAATAT-
1 AACATATATAATATA
*
3850725 -ATATATATAATATA
1 AACATATATAATATA
3850739 TATGGTTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
13 11 0.46
15 13 0.54
ACGTcount: A:0.58, C:0.05, G:0.02, T:0.35
Consensus pattern (15 bp):
AACATATATAATATA
Found at i:3850736 original size:13 final size:13
Alignment explanation
Indices: 3850699--3850741 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
3850689 ATTCTTTAAC
*
3850699 ATATATAATATAAAC
1 ATATATAATAT--AT
*
3850714 ATAGATAATATAT
1 ATATATAATATAT
3850727 ATATATAATATAT
1 ATATATAATATAT
3850740 AT
1 AT
3850742 GGTTTTAGCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
13 15 0.60
15 10 0.40
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (13 bp):
ATATATAATATAT
Found at i:3853823 original size:11 final size:10
Alignment explanation
Indices: 3853804--3853828 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
3853794 TAAATAGATT
3853804 TTTTTAAAAA
1 TTTTTAAAAA
3853814 TTTTTAAAAA
1 TTTTTAAAAA
3853824 TTTTT
1 TTTTT
3853829 TTTTTTACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTTTAAAAA
Found at i:3854043 original size:23 final size:23
Alignment explanation
Indices: 3854017--3854065 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
3854007 ATTTTATAAT
* *
3854017 AAAAATAATAT-TTAATTAATTTA
1 AAAAAAAATATATTAA-TAAATTA
3854040 AAAAAAAATATATTAATAAATTA
1 AAAAAAAATATATTAATAAATTA
3854063 AAA
1 AAA
3854066 TATTAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 19 0.83
24 4 0.17
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (23 bp):
AAAAAAAATATATTAATAAATTA
Found at i:3854151 original size:22 final size:23
Alignment explanation
Indices: 3854119--3854179 Score: 63
Period size: 22 Copynumber: 2.7 Consensus size: 23
3854109 ATTATTATTT
*
3854119 TTTAATAAAATTAAAAATAATA-
1 TTTAATTAAATTAAAAATAATAC
* *
3854141 TTTAATTAAATTTTAAAATATTAC
1 TTTAATTAAA-TTAAAAATAATAC
*
3854165 ATTAA-TAAATTAAAA
1 TTTAATTAAATTAAAA
3854180 TATTAATTAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
22 14 0.44
23 14 0.44
24 4 0.12
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (23 bp):
TTTAATTAAATTAAAAATAATAC
Found at i:3854162 original size:20 final size:20
Alignment explanation
Indices: 3854120--3854188 Score: 66
Period size: 23 Copynumber: 3.1 Consensus size: 20
3854110 TTATTATTTT
* *
3854120 TTAATAAAATTAAAAATAATAT
1 TTAAT-AAATT-AAAATATTAA
3854142 TTAATTAAATTTTAAAATATTACA
1 TTAA-TAAA--TTAAAATATTA-A
3854166 TTAATAAATTAAAATATTAA
1 TTAATAAATTAAAATATTAA
3854186 TTA
1 TTA
3854189 TATGTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
20 4 0.10
21 11 0.27
22 7 0.17
23 13 0.32
24 6 0.15
ACGTcount: A:0.57, C:0.01, G:0.00, T:0.42
Consensus pattern (20 bp):
TTAATAAATTAAAATATTAA
Found at i:3854263 original size:34 final size:34
Alignment explanation
Indices: 3854115--3854263 Score: 120
Period size: 35 Copynumber: 4.1 Consensus size: 34
3854105 GTTTATTATT
3854115 ATTTTTTAATAAAATTAAAAATAATATTTAATTAA
1 ATTTTTTAATAAAA-TAAAAATAATATTTAATTAA
** * * *
3854150 ATTTTAAAATATTACATTAATAAATTAAAATATTAATTAT
1 ATTTTTTAATA--A-AATAA-AAA-TAATAT-TTAATTAA
* * * *
3854190 ATGTTTTT-ATAAAATAAAAATTATTTTTTATTATT
1 AT-TTTTTAATAAAATAAAAATAATATTTAATTA-A
*
3854225 ATTTTTTAATAAAATAAAAATAATATTTAAATAA
1 ATTTTTTAATAAAATAAAAATAATATTTAATTAA
3854259 ATTTT
1 ATTTT
3854264 AAAAAATTTA
Statistics
Matches: 88, Mismatches: 17, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
34 16 0.18
35 36 0.41
36 3 0.03
37 8 0.09
38 5 0.06
39 5 0.06
40 12 0.14
41 3 0.03
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (34 bp):
ATTTTTTAATAAAATAAAAATAATATTTAATTAA
Found at i:3854290 original size:22 final size:22
Alignment explanation
Indices: 3854262--3854339 Score: 68
Period size: 23 Copynumber: 3.4 Consensus size: 22
3854252 TAAATAAATT
3854262 TTAAAAAATTTACATTAACAAA
1 TTAAAAAATTTACATTAACAAA
* * **
3854284 TTAAAAAAATAACATTTAAGGAA
1 TTAAAAAATTTACA-TTAACAAA
*
3854307 TTAAAAAAATTTATCATTATTCAAA
1 TT-AAAAAATTTA-CATTA-ACAAA
3854332 -TAAAAAAT
1 TTAAAAAAT
3854340 CTTTTATTCA
Statistics
Matches: 43, Mismatches: 9, Indels: 7
0.73 0.15 0.12
Matches are distributed among these distances:
22 12 0.28
23 15 0.35
24 12 0.28
25 4 0.09
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (22 bp):
TTAAAAAATTTACATTAACAAA
Found at i:3854637 original size:19 final size:20
Alignment explanation
Indices: 3854596--3854637 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
3854586 ATATTTAAAA
*
3854596 AATAAAAAAATATTATTTAT
1 AATAAAAAAATATTAATTAT
* *
3854616 AATAAAAAATTTTTAATT-T
1 AATAAAAAAATATTAATTAT
3854635 AAT
1 AAT
3854638 TTTTTTTATT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AATAAAAAAATATTAATTAT
Found at i:3854832 original size:122 final size:121
Alignment explanation
Indices: 3854612--3854962 Score: 389
Period size: 122 Copynumber: 2.9 Consensus size: 121
3854602 AAAATATTAT
* **
3854612 TTATAATAAAAAAT--TTTTAATTTAATTTTTTTTA-TTTT-TAAAAACATAATAATTAATATTT
1 TTATAAT-AAAAATCCTTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAAT-TTT
* * *
3854673 TAATTTATTAATGTAAATTTTTAAACTGAATTAAATATTACTTTTTATTTTATTAAAAA
64 TAATTTATTAATATAATTTTTTAAACTTAATTAAATATTA-TTTTTATTTTATTAAAAA
3854732 TTATAATAAAAATCCTTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATTTTTA
1 TTATAATAAAAATCCTTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATTTTTA
* * *
3854797 ATTTTTTAATCTAATTTTTTAAATTTAATTAAATATTATTTTTAATTTTATTAAAAA
66 ATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTT-ATTTTATTAAAAA
** * * *
3854854 AAATAATAATAAACCCTTTTATTTTATTTAAAATTTTTTATTATTA-AAAAA-A-AGTAA-T-A-
1 TTATAATAA-AAATCCTTTTA---T-TTTAAAATTTTTTATTTTTATAAAAACATAATAATTAAT
* *
3854913 TTTTAATTTGTTAATATAAATTTCTTTAAAGTTAATTAAATATTATTTTT
61 TTTTAATTTATTAATAT-AATTT-TTTAAACTTAATTAAATATTATTTTT
3854963 TATTAAAAAT
Statistics
Matches: 203, Mismatches: 16, Indels: 21
0.85 0.07 0.09
Matches are distributed among these distances:
119 6 0.03
120 7 0.03
121 37 0.18
122 68 0.33
123 55 0.27
124 4 0.02
125 1 0.00
126 6 0.03
127 19 0.09
ACGTcount: A:0.43, C:0.03, G:0.01, T:0.53
Consensus pattern (121 bp):
TTATAATAAAAATCCTTTTATTTTAAAATTTTTTATTTTTATAAAAACATAATAATTAATTTTTA
ATTTATTAATATAATTTTTTAAACTTAATTAAATATTATTTTTATTTTATTAAAAA
Found at i:3858425 original size:92 final size:92
Alignment explanation
Indices: 3858309--3858483 Score: 203
Period size: 92 Copynumber: 1.9 Consensus size: 92
3858299 TATGATATTC
* * * *
3858309 ATAATCAATCAACTTTTTAATTTTTCTATA-AAAAAG-AATCTGATTCTCAAATATAATTTATAC
1 ATAATCAACCAACTTTTTAATTTTT-T-TACAAAAAGAAATCTGAGTCTCAAATACAATTCATAC
**
3858372 ATTAGTCTAATTTTTGCAGTGTCATACTT
64 ATTAGTCTAATCCTTGCAGTGTCATACTT
* * ** *
3858401 ATAATCAACCAACTTTTCT-TTTTTTTTACCAAAAGAAATCTGAGTCTCATGTACAATTCATGCA
1 ATAATCAACCAACTTTT-TAATTTTTTTACAAAAAGAAATCTGAGTCTCAAATACAATTCATACA
3858465 TTAGTCTAATCCTTGCAGT
65 TTAGTCTAATCCTTGCAGT
3858484 CTTTCTTTTT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
90 2 0.03
91 6 0.09
92 60 0.87
93 1 0.01
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (92 bp):
ATAATCAACCAACTTTTTAATTTTTTTACAAAAAGAAATCTGAGTCTCAAATACAATTCATACAT
TAGTCTAATCCTTGCAGTGTCATACTT
Found at i:3858493 original size:69 final size:67
Alignment explanation
Indices: 3858415--3858682 Score: 279
Period size: 70 Copynumber: 3.8 Consensus size: 67
3858405 TCAACCAACT
* * *
3858415 TTTCTTTTTTTTTACCAAAAGAAATCTGAGTCTCATG-TACAATTCATGCATTAGTCTAATCCTT
1 TTTCTTTTTTCTTA--AAAAAAAATCTGA-TCTCA-GATATAATTCATGCATTAGTCTAATCCTT
3858479 GCAGTC
62 GCAGTC
* * *
3858485 TTTCTTTTTTCCTAAAAAAAATATCTGATTCTCAGATATAATTTATGCATTAGTCTAATCCTTAC
1 TTTCTTTTTTCTTAAAAAAAA-ATCTGA-TCTCAGATATAATTCATGCATTAGTCTAATCCTTGC
3858550 AGTC
64 AGTC
* * * *
3858554 ATTCTTTTTTCCTTATAAAAAAAAT-TCGATTTGCAGATATAATTCATGCATTAATCTAATTCTT
1 TTTCTTTTTT-CTTA-AAAAAAAATCT-GATCT-CAGATATAATTCATGCATTAGTCTAATCCTT
*
3858618 GCAGCC
62 GCAGTC
* **
3858624 TTTCTTTTTTTCTATAAAAAAGAATCCAATCCTCAGATATAATTCATGCATTAGTCTAA
1 TTTC-TTTTTTCT-TAAAAAAAAATCTGAT-CTCAGATATAATTCATGCATTAGTCTAA
3858683 CATTTACAGT
Statistics
Matches: 167, Mismatches: 21, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
68 7 0.04
69 53 0.32
70 91 0.54
71 16 0.10
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.42
Consensus pattern (67 bp):
TTTCTTTTTTCTTAAAAAAAAATCTGATCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAG
TC
Found at i:3858603 original size:70 final size:68
Alignment explanation
Indices: 3858455--3858682 Score: 289
Period size: 70 Copynumber: 3.3 Consensus size: 68
3858445 TCTCATGTAC
3858455 AATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCC--TAAAAAAAATATCTGATTCTC
1 AATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCCTATAAAAAAAAT-TC-GATT-TC
3858518 AGATAT
63 AGATAT
* * *
3858524 AATTTATGCATTAGTCTAATCCTTACAGTCATTCTTTTTTCCTTATAAAAAAAATTCGATTTGCA
1 AATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCC-TATAAAAAAAATTCGATTT-CA
3858589 GATAT
64 GATAT
* * * * * * *
3858594 AATTCATGCATTAATCTAATTCTTGCAGCCTTTCTTTTTTTCTATAAAAAAGAATCCAATCCTCA
1 AATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCCTATAAAAAA-AATTCGAT-TTCA
3858659 GATAT
64 GATAT
3858664 AATTCATGCATTAGTCTAA
1 AATTCATGCATTAGTCTAA
3858683 CATTTACAGT
Statistics
Matches: 139, Mismatches: 14, Indels: 11
0.85 0.09 0.07
Matches are distributed among these distances:
69 49 0.35
70 77 0.55
71 3 0.02
72 10 0.07
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.41
Consensus pattern (68 bp):
AATTCATGCATTAGTCTAATCCTTGCAGTCTTTCTTTTTTCCTATAAAAAAAATTCGATTTCAGA
TAT
Found at i:3858868 original size:94 final size:93
Alignment explanation
Indices: 3858624--3858879 Score: 388
Period size: 93 Copynumber: 2.7 Consensus size: 93
3858614 TCTTGCAGCC
* *
3858624 TTTCTTTTTTTCTATAAAAAAGAATCCAATCCTCAGATATAATTCATGCATTAGTCTAA-CATTT
1 TTTCTTTTTTTCTATAAAAAAGAATCCAATTCTCAGATATAATTCATGCATTAGTCTAATC-CTT
3858688 ACAGTCTGACACTTACAATCAATCAGTCT
65 ACAGTCTGACACTTACAATCAATCAGTCT
* * *
3858717 TTTCTTTTTTTATATAAAAAAGAATTCAATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
1 TTTCTTTTTTTCTATAAAAAAGAATCCAATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
* *
3858782 CAGTCTGACATTTATAATCAATCAGTCT
66 CAGTCTGACACTTACAATCAATCAGTCT
* * * *
3858810 TTCTTTTTTTTTCTATAAAAAAGAATCCGATTCTCAAATATAATTCATGTATTAGTCTAATCCTT
1 TT-TCTTTTTTTCTATAAAAAAGAATCCAATTCTCAGATATAATTCATGCATTAGTCTAATCCTT
3858875 ACAGT
65 ACAGT
3858880 ATTTCTTTTT
Statistics
Matches: 147, Mismatches: 14, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
93 86 0.59
94 61 0.41
ACGTcount: A:0.34, C:0.18, G:0.08, T:0.41
Consensus pattern (93 bp):
TTTCTTTTTTTCTATAAAAAAGAATCCAATTCTCAGATATAATTCATGCATTAGTCTAATCCTTA
CAGTCTGACACTTACAATCAATCAGTCT
Found at i:3858970 original size:70 final size:70
Alignment explanation
Indices: 3858804--3859020 Score: 328
Period size: 69 Copynumber: 3.1 Consensus size: 70
3858794 TATAATCAAT
* * *
3858804 CAGTCTTTCTTTTTTTTTCTATAAAAAAGAATCCGATTCTCAAATATAATTCATGTATTAGTCTA
1 CAGTCTTTC--TTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTA
3858869 ATCCTTA
64 ATCCTTA
* *
3858876 CAGTATTTCTTTTTTTCTATAAAAAA-AATCTGATTCTCAGATATAATTCATGCATTGGTCTAAT
1 CAGTCTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
*
3858940 TCTTA
66 CCTTA
* * *
3858945 CAGTCTTTCTTTTTTTCTATAAAAAAGAATATGATTCTTAGATATAATTCATGCATTAGTCCAAT
1 CAGTCTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
3859010 CCTTA
66 CCTTA
3859015 CAGTCT
1 CAGTCT
3859021 GACATTTACA
Statistics
Matches: 132, Mismatches: 12, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
69 63 0.48
70 61 0.46
72 8 0.06
ACGTcount: A:0.32, C:0.16, G:0.08, T:0.44
Consensus pattern (70 bp):
CAGTCTTTCTTTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAAT
CCTTA
Found at i:3859052 original size:92 final size:92
Alignment explanation
Indices: 3858950--3859262 Score: 415
Period size: 92 Copynumber: 3.5 Consensus size: 92
3858940 TCTTACAGTC
* * * * *
3858950 TTTCTTTTTTTCTATAAAAAAGAATATGATTCTTAGATATAATTCATGCATTAGTCCAATCCTTA
1 TTTCTTTTTTTCCATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
*
3859015 CAGTCTGACATTTACAATTAATCAATT
66 CAGTCTGACATTTACAATCAATCAATT
* * * *
3859042 TTTCTTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTTTAATTCTTG
1 TTTCTTTTTTTCCATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
*
3859107 CAGTCTGACATTTACAATCAGTCAA--
66 CAGTCTGACATTTACAATCAATCAATT
* * *
3859132 ---C-TTTTTTCCATAAAAAAGAATCTAATTCTCAGCTATAATTCATGTATTAGTCTAATCCTTG
1 TTTCTTTTTTTCCATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
*
3859193 CAGTCTGACATTCACAATCAATC-ATCT
66 CAGTCTGACATTTACAATCAATCAAT-T
* *
3859220 TTTCTTTTTTTCCATAAAAAAGAATCTGATTTTAAGATATAAT
1 TTTCTTTTTTTCCATAAAAAAGAATCTGATTCTCAGATATAAT
3859263 CACATTTATT
Statistics
Matches: 192, Mismatches: 22, Indels: 14
0.84 0.10 0.06
Matches are distributed among these distances:
85 1 0.01
86 74 0.39
87 1 0.01
91 1 0.01
92 115 0.60
ACGTcount: A:0.34, C:0.17, G:0.08, T:0.41
Consensus pattern (92 bp):
TTTCTTTTTTTCCATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTG
CAGTCTGACATTTACAATCAATCAATT
Found at i:3859175 original size:86 final size:86
Alignment explanation
Indices: 3858955--3859222 Score: 347
Period size: 86 Copynumber: 3.0 Consensus size: 86
3858945 CAGTCTTTCT
* * * *
3858955 TTTTTTCTATAAAAAAGAATATGATTCTTAGATATAATTCATGCATTAGTCCAATCCTTACAGTC
1 TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTC
*
3859020 TGACATTTACAATTAATCAATTTTTC
66 TGACATTTACAATCAATCAA-----C
* * *
3859046 TTTTTTTCTATAAAAAAGAATCCGATTCTCAGATATAATTCATGCATTAGTTTAATTCTTGCAGT
1 -TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGT
*
3859111 CTGACATTTACAATCAGTCAAC
65 CTGACATTTACAATCAATCAAC
* * * *
3859133 TTTTTTCCATAAAAAAGAATCTAATTCTCAGCTATAATTCATGTATTAGTCTAATCCTTGCAGTC
1 TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTC
* *
3859198 TGACATTCACAATCAATCATC
66 TGACATTTACAATCAATCAAC
3859219 TTTT
1 TTTT
3859223 CTTTTTTTCC
Statistics
Matches: 157, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
86 80 0.51
87 1 0.01
92 76 0.48
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.40
Consensus pattern (86 bp):
TTTTTTCTATAAAAAAGAATCTGATTCTCAGATATAATTCATGCATTAGTCTAATCCTTGCAGTC
TGACATTTACAATCAATCAAC
Found at i:3860197 original size:125 final size:123
Alignment explanation
Indices: 3859854--3860213 Score: 432
Period size: 125 Copynumber: 2.9 Consensus size: 123
3859844 TATTTTTAAT
* *
3859854 AAAAATAATATTTAATTAACTTTAAAGAAATTTATATTAACAAATTAAAATATT-A-ATTAT-TT
1 AAAAATAATATTTAATTAAATTTAAA-AAATTTACATTAACAAATTAAAATATTAATATTATGTT
* * * * *
3859916 TTTAATAATAAAAAATTTAAAATAAAAATAAAAGAGGTTTATTATTAT-TTTTTTAATAAAATT
65 TTTAAAAATAAAAAATTTAAAAT--TAA-AAAA-A-GTTTTTTATTATAATTTTTAATAAAATA
*
3859979 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAT-TTAATCATTATGTT
1 AAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAATATTAAT-ATTATG-T
3860043 TTTATAAAAATAAAAAA---AAAATTTTAAAAAAAGCTTTTTTATTATAATTTTTAATAAAATA
64 TTT-TAAAAATAAAAAATTTAAAA--TTAAAAAAAG-TTTTTTATTATAATTTTTAATAAAATA
* * *
3860104 AAAAATAATATTTAATTCAGTTT-AAAAATTTACATTAATAAATTAAAATATTAATTATTATGTT
1 AAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAATATTAA-TATTATGTT
*
3860168 TTTAAAAATAAAAAATTTTAAATTAAAAAAAGTTTTTTATTATAAT
65 TTTAAAAATAAAAAATTTAAAATTAAAAAAAGTTTTTTATTATAAT
3860214 AATATTTTTT
Statistics
Matches: 207, Mismatches: 13, Indels: 32
0.82 0.05 0.13
Matches are distributed among these distances:
123 30 0.14
124 72 0.35
125 73 0.35
126 15 0.07
128 5 0.02
129 12 0.06
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (123 bp):
AAAAATAATATTTAATTAAATTTAAAAAATTTACATTAACAAATTAAAATATTAATATTATGTTT
TTAAAAATAAAAAATTTAAAATTAAAAAAAGTTTTTTATTATAATTTTTAATAAAATA
Found at i:3860241 original size:125 final size:124
Alignment explanation
Indices: 3859854--3860213 Score: 382
Period size: 124 Copynumber: 2.9 Consensus size: 124
3859844 TATTTTTAAT
* * * *
3859854 AAAAATAATATTTAATTAACTTTAAAGAAATTTATATTAACAAATTAAAATATTAATTATT-T-T
1 AAAAATAATATTTAATTAAATTTAAA-AAAATTACATTAACAAATTAAAAT-TTAATCATTATGT
* * * * * *
3859917 TTAATAATAAAAAATTTAAAATAAAAA--T-AAAAGAGGTTTATTATTAT-TTTTTTAATAAAAT
64 TT--TTAT-AAAAA--TAAAAAAAAAATTTAAAAAAAGCTTTTTTATTATAATTTTTAATAAAAT
*
3859978 T
124 A
3859979 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATTTAATCATTATGTTT
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATTTAATCATTATGTTT
3860044 TTATAAAAATAAAAAAAAAATTTTAAAAAAAGCTTTTTTATTATAATTTTTAATAAAATA
66 TTATAAAAATAAAAAAAAAA-TTTAAAAAAAGCTTTTTTATTATAATTTTTAATAAAATA
* * * * *
3860104 AAAAATAATATTTAATTCAGTTT-AAAAATTTACATTAATAAATTAAAATATTAATTATTATG-T
1 AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAAT-TTAATCATTATGTT
*
3860167 TTT-TAAAAATAAAAAATTTTAAA-TTAAAAAAAG-TTTTTTATTATAAT
65 TTTATAAAAATAAAAAA---AAAATTTAAAAAAAGCTTTTTTATTATAAT
3860214 AATATTTTTT
Statistics
Matches: 207, Mismatches: 17, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
120 10 0.05
122 5 0.02
123 39 0.19
124 77 0.37
125 73 0.35
126 3 0.01
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.42
Consensus pattern (124 bp):
AAAAATAATATTTAATTAAATTTAAAAAAATTACATTAACAAATTAAAATTTAATCATTATGTTT
TTATAAAAATAAAAAAAAAATTTAAAAAAAGCTTTTTTATTATAATTTTTAATAAAATA
Found at i:3861453 original size:27 final size:26
Alignment explanation
Indices: 3861408--3861477 Score: 72
Period size: 27 Copynumber: 2.7 Consensus size: 26
3861398 TCTTATGTTC
* *
3861408 AATTAATATACTATTTTAAATAA-ATT
1 AATTAAAATAATA-TTTAAATAATATT
3861434 AATTATTAAATAATATTT-AATAATATT
1 AATTA--AAATAATATTTAAATAATATT
*
3861461 AATTAAAATGATATTTA
1 AATTAAAATAATATTTA
3861478 TAAAAGGAGA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
25 10 0.27
26 10 0.27
27 11 0.30
28 6 0.16
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.46
Consensus pattern (26 bp):
AATTAAAATAATATTTAAATAATATT
Found at i:3861738 original size:27 final size:26
Alignment explanation
Indices: 3861708--3861763 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
3861698 CATTATATTT
3861708 AATAAATTTAATAAAAATAATACATTA
1 AATAAATTTAATAAAAATAATA-ATTA
* ** *
3861735 AATATATTTTTTTAAAATAATAATTA
1 AATAAATTTAATAAAAATAATAATTA
3861761 AAT
1 AAT
3861764 TATTTGAAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 7 0.28
27 18 0.72
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (26 bp):
AATAAATTTAATAAAAATAATAATTA
Found at i:3861901 original size:22 final size:22
Alignment explanation
Indices: 3861835--3861901 Score: 65
Period size: 22 Copynumber: 3.3 Consensus size: 22
3861825 TTTATCTATT
3861835 ATTA-TTTA-ATATAAAT-ATA
1 ATTATTTTATATATAAATAATA
*
3861854 A-T-TCTTATA-ATAAATTAATA
1 ATTATTTTATATATAAA-TAATA
*
3861874 AATATTTTATATATAAATAATA
1 ATTATTTTATATATAAATAATA
3861896 ATTATT
1 ATTATT
3861902 AATATATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 11
0.73 0.06 0.21
Matches are distributed among these distances:
18 9 0.24
19 3 0.08
20 4 0.11
21 1 0.03
22 16 0.42
23 5 0.13
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (22 bp):
ATTATTTTATATATAAATAATA
Found at i:3862735 original size:23 final size:23
Alignment explanation
Indices: 3862705--3862760 Score: 69
Period size: 22 Copynumber: 2.3 Consensus size: 23
3862695 TGATTAATTG
3862705 AAATAATATATTAAATATAATTTTTT
1 AAATAATA-A-TAAA-ATAATTTTTT
3862731 AAATAATAATAAAATAA-TTTTT
1 AAATAATAATAAAATAATTTTTT
*
3862753 AATTAATA
1 AAATAATA
3862761 TTTATAAATA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
22 12 0.41
23 4 0.14
24 4 0.14
25 1 0.03
26 8 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAATAATAATAAAATAATTTTTT
Found at i:3862758 original size:26 final size:28
Alignment explanation
Indices: 3862698--3862758 Score: 69
Period size: 26 Copynumber: 2.3 Consensus size: 28
3862688 TATTTTTTGA
3862698 TTAATTGAAATAATATATTAAATATAATT
1 TTAATT-AAATAATATATTAAATATAATT
3862727 TT--TTAAATAATA-A-TAAA-ATAATTT
1 TTAATTAAATAATATATTAAATATAA-TT
3862751 TTAATTAA
1 TTAATTAA
3862759 TATTTATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
23 4 0.14
24 8 0.28
25 1 0.03
26 12 0.41
27 2 0.07
29 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (28 bp):
TTAATTAAATAATATATTAAATATAATT
Found at i:3863391 original size:8 final size:8
Alignment explanation
Indices: 3863378--3863402 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
3863368 GCCTATGTAA
3863378 TAAATTTT
1 TAAATTTT
3863386 TAAATTTT
1 TAAATTTT
3863394 TAAATTTT
1 TAAATTTT
3863402 T
1 T
3863403 TTATTAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (8 bp):
TAAATTTT
Found at i:3868002 original size:17 final size:17
Alignment explanation
Indices: 3867973--3868109 Score: 63
Period size: 16 Copynumber: 8.6 Consensus size: 17
3867963 ATAAAATTAA
3867973 AATATAAA-A-TAATA-
1 AATATAAATATTAATAT
3867987 AATAATAAATATTAATAT
1 AAT-ATAAATATTAATAT
*
3868005 AATATAAATA-T-AT-C
1 AATATAAATATTAATAT
3868019 AATATAAATTATT-ATAT
1 AATATAAA-TATTAATAT
*
3868036 TAT-TAAAT-TTAA-AT
1 AATATAAATATTAATAT
*
3868050 -ATATATAATATT-TTA-
1 AATATA-AATATTAATAT
*
3868065 AATATAATTATGATAA-AT
1 AATATAAATAT--TAATAT
3868083 AA-AT-AATATTAAATAT
1 AATATAAATATT-AATAT
*
3868099 AATAAAAATAT
1 AATATAAATAT
3868110 ATAAATTATT
Statistics
Matches: 94, Mismatches: 8, Indels: 38
0.67 0.06 0.27
Matches are distributed among these distances:
13 2 0.02
14 18 0.19
15 20 0.21
16 25 0.27
17 19 0.20
18 10 0.11
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (17 bp):
AATATAAATATTAATAT
Found at i:3868014 original size:6 final size:6
Alignment explanation
Indices: 3867949--3868110 Score: 57
Period size: 6 Copynumber: 25.0 Consensus size: 6
3867939 TTTAAGTACT
* *
3867949 AATATG AATATTA AATA-A AAT-TAA AATATAA AATAATA AATAATA AATATT
1 AATATA AATA-TA AATATA AATAT-A AATAT-A AAT-ATA AAT-ATA AATATA
* *
3868000 AATAT- AATATA AATATA TCAATATA AATTATTA TATTATTA AATTTA
1 AATATA AATATA AATATA --AATATA AA-TA-TA -AATA-TA AATATA
* *
3868047 AATAT- -ATATA ATATTTTA AATATA ATTATGATA AATAAA TAATATTA
1 AATATA AATATA A-A-TATA AATATA A--AT-ATA AATATA -AATA-TA
*
3868094 AATAT- AATAAA AATATA
1 AATATA AATATA AATATA
3868111 TAAATTATTA
Statistics
Matches: 123, Mismatches: 12, Indels: 42
0.69 0.07 0.24
Matches are distributed among these distances:
4 4 0.03
5 13 0.11
6 41 0.33
7 38 0.31
8 22 0.18
9 5 0.04
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (6 bp):
AATATA
Found at i:3868022 original size:8 final size:8
Alignment explanation
Indices: 3867972--3868115 Score: 69
Period size: 7 Copynumber: 18.5 Consensus size: 8
3867962 AATAAAATTA
3867972 AAATATA-
1 AAATATAT
3867979 AAATA-AT
1 AAATATAT
3867986 AAATA-AT
1 AAATATAT
3867993 AAATAT-T
1 AAATATAT
3868000 AATATAATAT
1 AA-AT-ATAT
3868010 AAATATAT
1 AAATATAT
*
3868018 CAATATA-
1 AAATATAT
*
3868025 AATTAT-T
1 AAATATAT
*
3868032 ATAT-TATT
1 AAATATA-T
3868040 AAAT-T-T
1 AAATATAT
3868046 AAATATAT
1 AAATATAT
*
3868054 ATAATATTT
1 A-AATATAT
*
3868063 TAA-ATAT
1 AAATATAT
*
3868070 AATTATGAT
1 AAATAT-AT
*
3868079 AAATAAAT
1 AAATATAT
3868087 -AATAT-T
1 AAATATAT
3868093 AAATATAAT
1 AAATAT-AT
3868102 AAAAATATAT
1 --AAATATAT
3868112 AAAT
1 AAAT
3868116 TATTAGATTA
Statistics
Matches: 105, Mismatches: 14, Indels: 35
0.68 0.09 0.23
Matches are distributed among these distances:
6 8 0.08
7 40 0.38
8 29 0.28
9 17 0.16
10 5 0.05
11 6 0.06
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.40
Consensus pattern (8 bp):
AAATATAT
Found at i:3868024 original size:14 final size:13
Alignment explanation
Indices: 3867972--3868113 Score: 71
Period size: 12 Copynumber: 10.8 Consensus size: 13
3867962 AATAAAATTA
*
3867972 AAATATAAAATAAT
1 AAATATATAAT-AT
3867986 AAATA-ATAA-AT
1 AAATATATAATAT
*
3867997 -ATTAATATAATAT
1 AAAT-ATATAATAT
3868010 AAATATATCAATAT
1 AAATATAT-AATAT
*
3868024 AAATTATTATATTATT
1 AAA-TA-TATAATA-T
*
3868040 AAATTTA-AATAT
1 AAATATATAATAT
* * *
3868052 ATATA-ATATTTT
1 AAATATATAATAT
*
3868064 AAATATAATTATGAT
1 AAATAT-ATAAT-AT
*
3868079 AAATAAATAATAT
1 AAATATATAATAT
* *
3868092 TAA-ATATAATAA
1 AAATATATAATAT
3868104 AAATATATAA
1 AAATATATAA
3868114 ATTATTAGAT
Statistics
Matches: 95, Mismatches: 20, Indels: 27
0.67 0.14 0.19
Matches are distributed among these distances:
10 2 0.02
11 4 0.04
12 24 0.25
13 22 0.23
14 24 0.25
15 12 0.13
16 7 0.07
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (13 bp):
AAATATATAATAT
Found at i:3868083 original size:24 final size:25
Alignment explanation
Indices: 3867972--3868100 Score: 80
Period size: 24 Copynumber: 5.3 Consensus size: 25
3867962 AATAAAATTA
*
3867972 AAATATAAA-ATA-ATAA-A-TAAT
1 AAATATAAATATATATAATATTATT
*
3867993 AAATATTAATATAATATAA-A-TATAT
1 AAATATAAATAT-ATATAATATTAT-T
*
3868018 CAATATAAAT-TAT-T-ATATTATT
1 AAATATAAATATATATAATATTATT
*
3868040 AAATTTAAATATATATAATATT-TT
1 AAATATAAATATATATAATATTATT
* *
3868064 AAATATAATTATGATAAATAAATAATATT
1 AAATATAA--AT-ATATAT-AATATTATT
3868093 AAATATAA
1 AAATATAA
3868101 TAAAAATATA
Statistics
Matches: 85, Mismatches: 9, Indels: 20
0.75 0.08 0.18
Matches are distributed among these distances:
21 9 0.11
22 13 0.15
23 9 0.11
24 18 0.21
25 14 0.16
26 2 0.02
27 5 0.06
28 5 0.06
29 10 0.12
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.40
Consensus pattern (25 bp):
AAATATAAATATATATAATATTATT
Found at i:3868113 original size:29 final size:29
Alignment explanation
Indices: 3867955--3868115 Score: 89
Period size: 29 Copynumber: 5.4 Consensus size: 29
3867945 TACTAATATG
* *
3867955 AATAT-TAAATAAAATTAAAATATAA-AAT
1 AATATATAAATAATATT-AAATATAATAAA
* *
3867983 AATAAAT-AATAAATATT-AATATAATATA
1 AATATATAAAT-AATATTAAATATAATAAA
* **
3868011 AATATATCAATATAAATTATTATATTATTAAATTTA
1 AATATAT-AA-AT-AA-TATTA-AATA-T-AATAAA
* * *
3868047 AATATATATAAT-ATTTTAAATATAATTAT
1 AATATATA-AATAATATTAAATATAATAAA
* *
3868076 GATAAATAAATAATATTAAATATAATAAA
1 AATATATAAATAATATTAAATATAATAAA
3868105 AATATATAAAT
1 AATATATAAAT
3868116 TATTAGATTA
Statistics
Matches: 102, Mismatches: 18, Indels: 25
0.70 0.12 0.17
Matches are distributed among these distances:
27 7 0.07
28 17 0.17
29 39 0.38
30 2 0.02
31 8 0.08
32 8 0.08
33 1 0.01
34 3 0.03
35 4 0.04
36 13 0.13
ACGTcount: A:0.60, C:0.01, G:0.01, T:0.39
Consensus pattern (29 bp):
AATATATAAATAATATTAAATATAATAAA
Found at i:3868458 original size:32 final size:32
Alignment explanation
Indices: 3868395--3868461 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
3868385 AAAATTTTTT
* * * **
3868395 AAACACTCATCATTTCGTATTTATATGCTTTC
1 AAACACTCATCATTTAGCATTCATACACTTTC
*
3868427 AAACACTTATCATTTAGCATTCATACACTTTC
1 AAACACTCATCATTTAGCATTCATACACTTTC
3868459 AAA
1 AAA
3868462 TATTTAAATT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.34, C:0.22, G:0.04, T:0.39
Consensus pattern (32 bp):
AAACACTCATCATTTAGCATTCATACACTTTC
Found at i:3869335 original size:15 final size:16
Alignment explanation
Indices: 3869310--3869339 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
3869300 GTATAATTTT
3869310 TTTTAATTTAAATTAG
1 TTTTAATTTAAATTAG
3869326 TTTT-ATTTAAATTA
1 TTTTAATTTAAATTA
3869340 TATTTTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TTTTAATTTAAATTAG
Found at i:3869361 original size:17 final size:17
Alignment explanation
Indices: 3869342--3869380 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
3869332 TTAAATTATA
*
3869342 TTTTAATAATAAAAATAT
1 TTTTAAT-ATAAAAATAG
3869360 TTTTAATATAAAAATAG
1 TTTTAATATAAAAATAG
3869377 TTTT
1 TTTT
3869381 TAATTTTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 13 0.65
18 7 0.35
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
TTTTAATATAAAAATAG
Found at i:3869363 original size:18 final size:18
Alignment explanation
Indices: 3869342--3869384 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
3869332 TTAAATTATA
3869342 TTTTAATAATAAAAATA-T
1 TTTTAAT-ATAAAAATAGT
3869360 TTTTAATATAAAAATAGT
1 TTTTAATATAAAAATAGT
3869378 TTTTAAT
1 TTTTAAT
3869385 TTTTTTCAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (18 bp):
TTTTAATATAAAAATAGT
Found at i:3881125 original size:16 final size:16
Alignment explanation
Indices: 3881104--3881158 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
3881094 TACGTAATAA
3881104 AATAAAATTAATATAT
1 AATAAAATTAATATAT
3881120 AATAAATATATAA-ATAT
1 AATAAA-AT-TAATATAT
* * *
3881137 ATTAAAATTTATATAA
1 AATAAAATTAATATAT
3881153 AATAAA
1 AATAAA
3881159 TTATTAAAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
15 2 0.06
16 16 0.50
17 11 0.34
18 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
AATAAAATTAATATAT
Found at i:3881126 original size:33 final size:32
Alignment explanation
Indices: 3881099--3881162 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
3881089 TAAATTACGT
*
3881099 AATAAAATAAAATTAATATATAATAAATATATA
1 AATAAAATAAAATTAATATAAAATAAAT-TATA
* * *
3881132 AATATATTAAAATTTATATAAAATAAATTAT
1 AATAAAATAAAATTAATATAAAATAAATTAT
3881163 TAAAATATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 3 0.11
33 24 0.89
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (32 bp):
AATAAAATAAAATTAATATAAAATAAATTATA
Found at i:3881138 original size:21 final size:21
Alignment explanation
Indices: 3881077--3881134 Score: 57
Period size: 23 Copynumber: 2.6 Consensus size: 21
3881067 ATTTTTAATG
3881077 AATAAAA-AAAATTAA-ATTACGT
1 AATAAAATAAAATTAATA-TA--T
3881099 AATAAAATAAAATTAATATAT
1 AATAAAATAAAATTAATATAT
3881120 AATAAATATATAAAT
1 AATAAA-ATA-AAAT
3881135 ATATTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
21 7 0.22
22 10 0.31
23 14 0.44
24 1 0.03
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.31
Consensus pattern (21 bp):
AATAAAATAAAATTAATATAT
Found at i:3881155 original size:11 final size:11
Alignment explanation
Indices: 3881099--3881169 Score: 56
Period size: 11 Copynumber: 6.4 Consensus size: 11
3881089 TAAATTACGT
3881099 AATAAA-ATAA
1 AATAAATATAA
* *
3881109 AATTAATATAT
1 AATAAATATAA
3881120 AATAAATATATA
1 AATAAATATA-A
*
3881132 AATATAT-TAA
1 AATAAATATAA
**
3881142 AATTTATATAA
1 AATAAATATAA
3881153 AATAAATTATTAA
1 AATAAA-TA-TAA
3881166 AATA
1 AATA
3881170 TTATAATTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 7
0.76 0.13 0.11
Matches are distributed among these distances:
10 12 0.25
11 21 0.44
12 8 0.17
13 7 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (11 bp):
AATAAATATAA
Found at i:3881178 original size:32 final size:33
Alignment explanation
Indices: 3881106--3881186 Score: 112
Period size: 33 Copynumber: 2.5 Consensus size: 33
3881096 CGTAATAAAA
* *
3881106 TAAAATTAATATATAATAAATATATAAATATAT
1 TAAAATTTATATAAAATAAATATATAAATATAT
3881139 TAAAATTTATATAAAATAAAT-TATTAAA-ATAT
1 TAAAATTTATATAAAATAAATATA-TAAATATAT
*
3881171 TATAATTTATATAAAA
1 TAAAATTTATATAAAA
3881187 AAAAAAACCT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
32 21 0.48
33 23 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (33 bp):
TAAAATTTATATAAAATAAATATATAAATATAT
Found at i:3881187 original size:20 final size:18
Alignment explanation
Indices: 3881126--3881186 Score: 60
Period size: 14 Copynumber: 3.5 Consensus size: 18
3881116 ATATAATAAA
3881126 TATATAAATATATTAAAATT
1 TATATAAA-ATATT-AAATT
3881146 TATAT-AAA-A-TAAA-T
1 TATATAAAATATTAAATT
3881160 TAT-TAAAATATTATAATT
1 TATATAAAATATTA-AATT
3881178 TATATAAAA
1 TATATAAAA
3881187 AAAAAAACCT
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
13 1 0.03
14 7 0.20
15 4 0.11
16 3 0.09
17 3 0.09
18 5 0.14
19 7 0.20
20 5 0.14
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
TATATAAAATATTAAATT
Found at i:3881635 original size:2 final size:2
Alignment explanation
Indices: 3881628--3881658 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
3881618 TTCTTTTTGG
3881628 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
3881659 ACTACAGAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:3887975 original size:18 final size:17
Alignment explanation
Indices: 3887949--3887984 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
3887939 ACTTAATTAA
*
3887949 TTTATAAAATTAAATATT
1 TTTAAAAAATT-AATATT
3887967 TTTAAAAAATTAATATT
1 TTTAAAAAATTAATATT
3887984 T
1 T
3887985 AATATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TTTAAAAAATTAATATT
Found at i:3890246 original size:14 final size:14
Alignment explanation
Indices: 3890216--3890290 Score: 55
Period size: 14 Copynumber: 5.4 Consensus size: 14
3890206 TTTGAAATGA
*
3890216 ATATGTATTTATTAT
1 ATATATATTT-TTAT
3890231 ATATATATTTTTAT
1 ATATATATTTTTAT
* ***
3890245 ATATGT-TTAAAAT
1 ATATATATTTTTAT
3890258 AT-TATATTTTTAT
1 ATATATATTTTTAT
* **
3890271 ATTTATATTTAAAT
1 ATATATATTTTTAT
3890285 ATATAT
1 ATATAT
3890291 TAAATATGAA
Statistics
Matches: 46, Mismatches: 12, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
12 2 0.04
13 12 0.26
14 23 0.50
15 9 0.20
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.59
Consensus pattern (14 bp):
ATATATATTTTTAT
Found at i:3890289 original size:26 final size:25
Alignment explanation
Indices: 3890231--3890291 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 25
3890221 TATTTATTAT
*
3890231 ATATATATTTTTATATATGTTTAAA
1 ATATATATTTTTATATATATTTAAA
3890256 ATATTATATTTTTATATTTATATTT-AA
1 ATA-TATATTTTTATA--TATATTTAAA
3890283 ATATATATT
1 ATATATATT
3890292 AAATATGAAT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
25 3 0.09
26 18 0.56
27 5 0.16
28 6 0.19
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (25 bp):
ATATATATTTTTATATATATTTAAA
Found at i:3890793 original size:24 final size:25
Alignment explanation
Indices: 3890766--3890817 Score: 61
Period size: 26 Copynumber: 2.1 Consensus size: 25
3890756 TAACAATGTA
*
3890766 TTGGATATT-TGATTTTTTTTTTTT
1 TTGGATATTAAGATTTTTTTTTTTT
* *
3890790 TTGGGTATTAAAGCTTTTTTTTTTTT
1 TTGGATATT-AAGATTTTTTTTTTTT
3890816 TT
1 TT
3890818 TCATGTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 8 0.35
26 15 0.65
ACGTcount: A:0.13, C:0.02, G:0.13, T:0.71
Consensus pattern (25 bp):
TTGGATATTAAGATTTTTTTTTTTT
Found at i:3891204 original size:13 final size:13
Alignment explanation
Indices: 3891186--3891238 Score: 54
Period size: 13 Copynumber: 4.1 Consensus size: 13
3891176 TTTTATAATA
3891186 ATATATTAATATT
1 ATATATTAATATT
** *
3891199 ATATATTTTTAAT
1 ATATATTAATATT
*
3891212 ATATATTTATATT
1 ATATATTAATATT
3891225 -TATATTATATATT
1 ATATATTA-ATATT
3891238 A
1 A
3891239 ATTTTTTTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
12 6 0.19
13 26 0.81
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (13 bp):
ATATATTAATATT
Found at i:3891211 original size:27 final size:27
Alignment explanation
Indices: 3891138--3891230 Score: 88
Period size: 26 Copynumber: 3.4 Consensus size: 27
3891128 TTATTTTTTT
*
3891138 ATATTATAATTATATTTAA-AATATTATATA
1 ATATTAT-A-TATTTTTAATAATA-TAT-TA
3891168 A-ATTATAT-TTTTATAATAATATATTA
1 ATATTATATATTTT-TAATAATATATTA
*
3891194 ATATTATATATTTTTAAT-ATATATTT
1 ATATTATATATTTTTAATAATATATTA
3891220 ATATT-TATATT
1 ATATTATATATT
3891231 ATATATTAAT
Statistics
Matches: 57, Mismatches: 2, Indels: 13
0.79 0.03 0.18
Matches are distributed among these distances:
25 6 0.11
26 18 0.32
27 18 0.32
28 9 0.16
29 5 0.09
30 1 0.02
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (27 bp):
ATATTATATATTTTTAATAATATATTA
Found at i:3891230 original size:32 final size:29
Alignment explanation
Indices: 3891171--3891237 Score: 89
Period size: 32 Copynumber: 2.2 Consensus size: 29
3891161 TTATATAAAT
3891171 TATATTTTTATAATAATATATTAATATTA
1 TATATTTTTATAATAATATATTAATATTA
* *
3891200 TATATTTTTAATATATATTTATATTTATATTA
1 TATATTTTT-ATA-ATA-ATATATTAATATTA
3891232 TATATT
1 TATATT
3891238 AATTTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 9 0.27
30 3 0.09
31 3 0.09
32 18 0.55
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (29 bp):
TATATTTTTATAATAATATATTAATATTA
Found at i:3891249 original size:19 final size:20
Alignment explanation
Indices: 3891189--3891260 Score: 80
Period size: 19 Copynumber: 3.8 Consensus size: 20
3891179 TATAATAATA
3891189 TATTA-ATATTATATATTTT
1 TATTATATATTATATATTTT
* *
3891208 TAATATATATT-TATATTTA
1 TATTATATATTATATATTTT
*
3891227 TATTATATATTA-ATTTTTT
1 TATTATATATTATATATTTT
3891246 TATT-TATTATTATAT
1 TATTATA-TATTATAT
3891261 TTATTTTTTT
Statistics
Matches: 44, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
18 2 0.05
19 35 0.80
20 7 0.16
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTATATATTATATATTTT
Found at i:3891259 original size:37 final size:38
Alignment explanation
Indices: 3891187--3891264 Score: 99
Period size: 37 Copynumber: 2.1 Consensus size: 38
3891177 TTTATAATAA
3891187 TATATTAATATTATATATTTTTAATATATATTTATATT
1 TATATTAATATTATATATTTTTAATATATATTTATATT
* *
3891225 TATATTATATATTA-AT-TTTTTTATTTAT-TATTATATT
1 TATATTA-ATATTATATATTTTTAATATATAT-TTATATT
3891262 TAT
1 TAT
3891265 TTTTTTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
36 1 0.03
37 20 0.56
38 9 0.25
39 6 0.17
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (38 bp):
TATATTAATATTATATATTTTTAATATATATTTATATT
Found at i:3891265 original size:12 final size:12
Alignment explanation
Indices: 3891218--3891265 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
3891208 TAATATATAT
3891218 TTATATTTA-TA
1 TTATATTTATTA
*
3891229 TTATATATTAATTT
1 TTATAT-TT-ATTA
*
3891243 TTTTATTTATTA
1 TTATATTTATTA
3891255 TTATATTTATT
1 TTATATTTATT
3891266 TTTTTAATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
11 6 0.20
12 15 0.50
13 3 0.10
14 6 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (12 bp):
TTATATTTATTA
Found at i:3891266 original size:24 final size:25
Alignment explanation
Indices: 3891221--3891271 Score: 79
Period size: 24 Copynumber: 2.1 Consensus size: 25
3891211 TATATATTTA
3891221 TATTTATATTATATATTAATTTTTT
1 TATTTATATTATATATTAATTTTTT
3891246 TATTTATTATTATAT-TT-ATTTTTT
1 TATTTA-TATTATATATTAATTTTTT
3891270 TA
1 TA
3891272 ATAACTATAC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 9 0.36
25 8 0.32
26 8 0.32
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (25 bp):
TATTTATATTATATATTAATTTTTT
Found at i:3892500 original size:14 final size:14
Alignment explanation
Indices: 3892483--3892538 Score: 60
Period size: 14 Copynumber: 3.9 Consensus size: 14
3892473 TTTGATGAAA
3892483 AAAATTTTAATATT
1 AAAATTTTAATATT
*
3892497 AAAATTTAAATATT
1 AAAATTTTAATATT
3892511 AAAATCTATTAAATATT
1 AAAAT-T-TT-AATATT
*
3892528 -AATTTTTAATA
1 AAAATTTTAATA
3892539 GTAATTGAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
13 4 0.11
14 20 0.56
15 2 0.06
16 4 0.11
17 6 0.17
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (14 bp):
AAAATTTTAATATT
Found at i:3893124 original size:20 final size:19
Alignment explanation
Indices: 3893096--3893148 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
3893086 CCAAAAGTTT
3893096 AATTTATTTATTTTATTAA
1 AATTTATTTATTTTATTAA
3893115 AATATTATTT-TTTATATTAA
1 AAT-TTATTTATTT-TATTAA
* *
3893135 TATTTATATATTTT
1 AATTTATTTATTTT
3893149 TATAATTAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
AATTTATTTATTTTATTAA
Found at i:3893489 original size:8 final size:8
Alignment explanation
Indices: 3893476--3893501 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
3893466 CACAAATCTA
3893476 GAATAATT
1 GAATAATT
3893484 GAATAATT
1 GAATAATT
3893492 GAATAATT
1 GAATAATT
3893500 GA
1 GA
3893502 TGGTAAGACA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (8 bp):
GAATAATT
Found at i:3893534 original size:3 final size:3
Alignment explanation
Indices: 3893526--3893557 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
3893516 AACATAATAG
3893526 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
3893558 CAACGTGTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:3893625 original size:2 final size:2
Alignment explanation
Indices: 3893618--3893645 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3893608 ATAAATTCAG
3893618 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3893646 TATTGAAGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3894032 original size:17 final size:18
Alignment explanation
Indices: 3894002--3894035 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
3893992 AATTAAATGT
*
3894002 ATTTTATAATTATTTAAG
1 ATTTTATAAATATTTAAG
3894020 ATTTTA-AAATATTTAA
1 ATTTTATAAATATTTAA
3894036 TAATTTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
ATTTTATAAATATTTAAG
Found at i:3896197 original size:2 final size:2
Alignment explanation
Indices: 3896192--3896219 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3896182 TTTTACCGTC
3896192 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3896220 TACTCGTGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3896506 original size:17 final size:19
Alignment explanation
Indices: 3896470--3896507 Score: 53
Period size: 17 Copynumber: 2.1 Consensus size: 19
3896460 ATTTTATCTG
3896470 ATTTTTATTAATTAAATTA
1 ATTTTTATTAATTAAATTA
*
3896489 ATTTTT-TT-ATTAATTTA
1 ATTTTTATTAATTAAATTA
3896506 AT
1 AT
3896508 AGATTTTGGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 10 0.56
18 2 0.11
19 6 0.33
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (19 bp):
ATTTTTATTAATTAAATTA
Found at i:3897270 original size:17 final size:16
Alignment explanation
Indices: 3897223--3897267 Score: 51
Period size: 15 Copynumber: 2.9 Consensus size: 16
3897213 TTATTTTTAA
3897223 ATTTAATAAATATTAATT
1 ATTTAA-AAA-ATTAATT
3897241 -TTT-AAAAA-TAATT
1 ATTTAAAAAATTAATT
3897254 ATTTAAAAAATTAA
1 ATTTAAAAAATTAA
3897268 ATTCAAATCC
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
13 5 0.21
14 4 0.17
15 8 0.33
16 4 0.17
17 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTTAAAAAATTAATT
Found at i:3899072 original size:3 final size:3
Alignment explanation
Indices: 3899057--3899092 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
3899047 TTAAAGAATT
*
3899057 TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
3899093 ATTGAAGGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:3899291 original size:8 final size:8
Alignment explanation
Indices: 3899278--3899315 Score: 58
Period size: 8 Copynumber: 4.8 Consensus size: 8
3899268 AATGTTAAAG
3899278 AAAAATAA
1 AAAAATAA
3899286 AAAAATAA
1 AAAAATAA
*
3899294 AAAAAGAA
1 AAAAATAA
*
3899302 TAAAATAA
1 AAAAATAA
3899310 AAAAAT
1 AAAAAT
3899316 TTCCTGTCCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.84, C:0.00, G:0.03, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:3904211 original size:2 final size:2
Alignment explanation
Indices: 3904200--3904242 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
3904190 GATAGGTCAA
*
3904200 CT CT -T CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CC CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
3904241 CT
1 CT
3904243 ACATGGTGCA
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 37 0.97
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
CT
Found at i:3904477 original size:2 final size:2
Alignment explanation
Indices: 3904470--3904497 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
3904460 TACTAGTAAG
3904470 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3904498 GCATTTAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3916027 original size:2 final size:2
Alignment explanation
Indices: 3916020--3916049 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
3916010 TTTTGCTCAC
*
3916020 AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
3916050 TATAGAGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:3934182 original size:2 final size:2
Alignment explanation
Indices: 3934175--3934204 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
3934165 ATAAAAAGAA
3934175 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
3934205 TTTTTCACAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:3936057 original size:22 final size:20
Alignment explanation
Indices: 3936013--3936057 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
3936003 AATTTTAAAT
* *
3936013 ATTTTGTATTTTTAAATATA
1 ATTTTGTATTTTTAAAGAAA
3936033 ATTTTGTATATATTTAAAGAAA
1 ATTTTGTAT-T-TTTAAAGAAA
3936055 ATT
1 ATT
3936058 ATAATATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 9 0.43
21 1 0.05
22 11 0.52
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (20 bp):
ATTTTGTATTTTTAAAGAAA
Found at i:3936095 original size:12 final size:12
Alignment explanation
Indices: 3936078--3936104 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
3936068 TATCAATGAA
3936078 AATAAAATAAAT
1 AATAAAATAAAT
3936090 AATAAAATAAAT
1 AATAAAATAAAT
3936102 AAT
1 AAT
3936105 TTTCATAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAAAATAAAT
Found at i:3936349 original size:17 final size:17
Alignment explanation
Indices: 3936313--3936380 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
3936303 TTTAATATGT
3936313 TTATATATTTATATTTATA
1 TTATAT-TTTATA-TTATA
* *
3936332 TTATTTTTTGTATTATA
1 TTATATTTTATATTATA
**
3936349 TCGTATTTTATATTATA
1 TTATATTTTATATTATA
3936366 TTATAATTTTTATAT
1 TTAT-A-TTTTATAT
3936381 CGTATAATCT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
17 20 0.51
18 6 0.15
19 13 0.33
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (17 bp):
TTATATTTTATATTATA
Found at i:3937008 original size:23 final size:23
Alignment explanation
Indices: 3936971--3937017 Score: 69
Period size: 23 Copynumber: 2.0 Consensus size: 23
3936961 TTGTATAATA
*
3936971 TTTATATTATTTTTATTTTATGT
1 TTTATATTATTTTTATGTTATGT
3936994 TTTA-ATTATTCTTTATGTTATGT
1 TTTATATTATT-TTTATGTTATGT
3937017 T
1 T
3937018 CATGTCATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (23 bp):
TTTATATTATTTTTATGTTATGT
Found at i:3937354 original size:5 final size:5
Alignment explanation
Indices: 3937346--3937408 Score: 58
Period size: 5 Copynumber: 12.2 Consensus size: 5
3937336 ATTATCATGT
* *
3937346 TTATA TTATTT TTATA TTATA TTATA TTTTAA TTATTA TT-T- TTATA
1 TTATA TTA-TA TTATA TTATA TTATA TTAT-A TTA-TA TTATA TTATA
3937392 TTATA TTTATA TTATA T
1 TTATA -TTATA TTATA T
3937409 CTTAATTTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
3 2 0.04
4 2 0.04
5 28 0.58
6 15 0.31
7 1 0.02
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (5 bp):
TTATA
Found at i:3937407 original size:11 final size:11
Alignment explanation
Indices: 3937345--3937426 Score: 75
Period size: 11 Copynumber: 7.7 Consensus size: 11
3937335 TATTATCATG
*
3937345 TTTATATTATT
1 TTTATATTATA
3937356 TTTATATTATA
1 TTTATATTATA
*
3937367 -TTATATTTTA
1 TTTATATTATA
* *
3937377 -AT-TATTATT
1 TTTATATTATA
3937386 TTTATATTATA
1 TTTATATTATA
3937397 TTTATATTATA
1 TTTATATTATA
3937408 TCTTA-ATT-TA
1 T-TTATATTATA
3937418 TTTTATATT
1 -TTTATATT
3937427 TTATATAATT
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
9 5 0.08
10 16 0.27
11 35 0.59
12 3 0.05
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTATATTATA
Found at i:3937427 original size:41 final size:39
Alignment explanation
Indices: 3937305--3937432 Score: 120
Period size: 41 Copynumber: 3.2 Consensus size: 39
3937295 TGATAATTTA
*
3937305 TTTTATATAAATATTTATA-TAT-TCTT-ATGTTATTATCAT
1 TTTTATAT-TATATTTATATTATATCTTAAT-TTATTAT-AT
* * *
3937344 GTTTATATTATTTTTATATTATAT-TATATTTTAATTATTAT
1 TTTTATATTATATTTATATTATATCT-TAATTT-ATTA-TAT
*
3937385 TTTTATATTATATTTATATTATATCTTAATTTATTTTAT
1 TTTTATATTATATTTATATTATATCTTAATTTATTATAT
3937424 ATTTTATAT
1 -TTTTATAT
3937433 AATTAATTTT
Statistics
Matches: 73, Mismatches: 8, Indels: 15
0.76 0.08 0.16
Matches are distributed among these distances:
38 8 0.11
39 14 0.19
40 15 0.21
41 34 0.47
42 2 0.03
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (39 bp):
TTTTATATTATATTTATATTATATCTTAATTTATTATAT
Found at i:3937463 original size:27 final size:25
Alignment explanation
Indices: 3937362--3937454 Score: 73
Period size: 25 Copynumber: 3.6 Consensus size: 25
3937352 TATTTTTATA
* * *
3937362 TTATATTATATTTTA-ATTATTATTT
1 TTATTTTATATTTTATATAATTA-AT
* *
3937387 TTATATTATATTTATATTATATCTTAAT
1 TTATTTTATATTT-TA-TATA-ATTAAT
3937415 TTATTTTATATTTTATATAATTAATT
1 TTATTTTATATTTTATATAATTAA-T
3937441 TTAATTTTA-ATTTT
1 TT-ATTTTATATTTT
3937455 TAATAAATTT
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
25 17 0.30
26 14 0.25
27 8 0.14
28 15 0.26
29 3 0.05
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (25 bp):
TTATTTTATATTTTATATAATTAAT
Found at i:3937479 original size:17 final size:18
Alignment explanation
Indices: 3937454--3937495 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
3937444 ATTTTAATTT
*
3937454 TTAATAAATTTTATTAA-A
1 TTAA-AAATTTTATAAATA
3937472 TTAAAAATTTTATAAATA
1 TTAAAAATTTTATAAATA
3937490 TTAAAA
1 TTAAAA
3937496 CTTTACGGAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTAAAAATTTTATAAATA
Found at i:3937949 original size:11 final size:12
Alignment explanation
Indices: 3937936--3937997 Score: 60
Period size: 11 Copynumber: 5.4 Consensus size: 12
3937926 AATTATATAA
3937936 AATATAAGATA-
1 AATATAAGATAT
3937947 AAT-TAAGATAT
1 AATATAAGATAT
3937958 AATATAA-ATAT
1 AATATAAGATAT
* *
3937969 AATATTAAAAAAT
1 AATA-TAAGATAT
*
3937982 AAT-TAAAATAT
1 AATATAAGATAT
3937993 AATAT
1 AATAT
3937998 GATTAAAAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
10 7 0.16
11 24 0.55
12 7 0.16
13 6 0.14
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (12 bp):
AATATAAGATAT
Found at i:3937970 original size:35 final size:35
Alignment explanation
Indices: 3937930--3937997 Score: 84
Period size: 35 Copynumber: 1.9 Consensus size: 35
3937920 ATAAAAAATT
* * *
3937930 ATATAAAA-TATAAGATAAATTAAGATATAATATAA
1 ATATAAAATTAAAAAAT-AATTAAAATATAATATAA
*
3937965 ATATAATATTAAAAAATAATTAAAATATAATAT
1 ATATAAAATTAAAAAATAATTAAAATATAATAT
3937998 GATTAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
35 22 0.79
36 6 0.21
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (35 bp):
ATATAAAATTAAAAAATAATTAAAATATAATATAA
Found at i:3937983 original size:24 final size:26
Alignment explanation
Indices: 3937907--3938012 Score: 94
Period size: 24 Copynumber: 4.0 Consensus size: 26
3937897 ATTTAAAGCA
* *
3937907 AAAATTTAATTATATAAAAAATTATAT
1 AAAATATAA-TATATAAAAAATAATAT
*
3937934 AAAATATAAGATA-AATTAAGATATAATAT
1 AAAATATAATATATAA--AA-A-ATAATAT
3937963 -AAATATAATAT-TAAAAAATAAT-T
1 AAAATATAATATATAAAAAATAATAT
*
3937986 AAAATATAATATGATTAAAAATAATAT
1 AAAATATAATAT-ATAAAAAATAATAT
3938013 GAACATGATA
Statistics
Matches: 65, Mismatches: 5, Indels: 18
0.74 0.06 0.20
Matches are distributed among these distances:
23 1 0.02
24 16 0.25
25 3 0.05
26 15 0.23
27 11 0.17
28 13 0.20
29 6 0.09
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (26 bp):
AAAATATAATATATAAAAAATAATAT
Found at i:3938011 original size:15 final size:16
Alignment explanation
Indices: 3937983--3938014 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
3937973 TTAAAAAATA
3937983 ATTAAAATATAATATG
1 ATTAAAATATAATATG
3937999 ATTAAAA-ATAATATG
1 ATTAAAATATAATATG
3938014 A
1 A
3938015 ACATGATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.56
16 7 0.44
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.34
Consensus pattern (16 bp):
ATTAAAATATAATATG
Found at i:3938021 original size:21 final size:19
Alignment explanation
Indices: 3937988--3938033 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
3937978 AAATAATTAA
*
3937988 AATATAATATGATTAAAAAT
1 AATATAACATGA-TAAAAAT
3938008 AATATGAACATGATAAAAAT
1 AATAT-AACATGATAAAAAT
3938028 -ATATAA
1 AATATAA
3938034 ATATATAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 2 0.08
19 4 0.17
20 12 0.50
21 6 0.25
ACGTcount: A:0.61, C:0.02, G:0.07, T:0.30
Consensus pattern (19 bp):
AATATAACATGATAAAAAT
Found at i:3938051 original size:14 final size:14
Alignment explanation
Indices: 3938020--3938089 Score: 50
Period size: 14 Copynumber: 4.6 Consensus size: 14
3938010 TATGAACATG
*
3938020 ATAAAAATATATAAAT
1 ATAAAAATAT-T-TAT
*
3938036 ATATAAATATTTAT
1 ATAAAAATATTTAT
*
3938050 ATAAAACGAATTATTAAT
1 AT-AAA--AA-TATTTAT
*
3938068 ATATAAATATTTAT
1 ATAAAAATATTTAT
3938082 ATAAAAAT
1 ATAAAAAT
3938090 GTCATGGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 10
0.72 0.12 0.17
Matches are distributed among these distances:
14 17 0.40
15 5 0.12
16 9 0.21
17 4 0.09
18 8 0.19
ACGTcount: A:0.59, C:0.01, G:0.01, T:0.39
Consensus pattern (14 bp):
ATAAAAATATTTAT
Found at i:3938925 original size:4 final size:4
Alignment explanation
Indices: 3938918--3938974 Score: 61
Period size: 4 Copynumber: 15.5 Consensus size: 4
3938908 TTTTTCATTT
* *
3938918 TTTC TTTC CTT- TTTC TTT- TTTC -TTC TTCC TTTC TTTC TTT- TTT-
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC TTTC
3938961 TTTC TTTC TTTC TT
1 TTTC TTTC TTTC TT
3938975 GATAAAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
3 14 0.31
4 31 0.69
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTC
Found at i:3938936 original size:18 final size:19
Alignment explanation
Indices: 3938910--3938974 Score: 71
Period size: 18 Copynumber: 3.3 Consensus size: 19
3938900 CATAATTTTT
3938910 TTTCATTTTTTCTTTCCTT-
1 TTTC-TTTTTTCTTTCCTTC
3938929 TTTCTTTTTTCTTCTTCCTTTC
1 TTTCTTTTTTC-T-TTCC-TTC
*
3938951 TTTCTTTTTT-TTTCTTTC
1 TTTCTTTTTTCTTTCCTTC
3938969 TTTCTT
1 TTTCTT
3938975 GATAAAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
18 16 0.39
19 8 0.20
20 5 0.12
21 2 0.05
22 10 0.24
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTCTTTTTTCTTTCCTTC
Found at i:3938949 original size:25 final size:25
Alignment explanation
Indices: 3938907--3938966 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
3938897 ATACATAATT
* *
3938907 TTTTTTCATTTTTTCTTTCCTTT-TTC
1 TTTTTTC-TTCTTCCTTT-CTTTCTTC
*
3938933 TTTTTTCTTCTTCCTTTCTTTCTTT
1 TTTTTTCTTCTTCCTTTCTTTCTTC
3938958 TTTTTTCTT
1 TTTTTTCTT
3938967 TCTTTCTTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.13
25 19 0.63
26 7 0.23
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (25 bp):
TTTTTTCTTCTTCCTTTCTTTCTTC
Found at i:3938957 original size:22 final size:22
Alignment explanation
Indices: 3938910--3938974 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 22
3938900 CATAATTTTT
3938910 TTTCATTTTTTC-T-TTCC-TT-
1 TTTC-TTTTTTCTTCTTCCTTTC
3938929 TTTCTTTTTTCTTCTTCCTTTC
1 TTTCTTTTTTCTTCTTCCTTTC
* *
3938951 TTTCTTTTTTTTTCTTTCTTTC
1 TTTCTTTTTTCTTCTTCCTTTC
3938973 TT
1 TT
3938975 GATAAAAATA
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
18 7 0.17
19 5 0.12
20 4 0.10
21 2 0.05
22 22 0.55
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTCTTTTTTCTTCTTCCTTTC
Found at i:3939320 original size:23 final size:23
Alignment explanation
Indices: 3939294--3939337 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
3939284 AATACGACAT
*
3939294 AAACATA-ACATAAAGAATAATTA
1 AAACATAGA-ATAAAAAATAATTA
3939317 AAACATAGAATAAAAAATAAT
1 AAACATAGAATAAAAAATAAT
3939338 ATGAATATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 18 0.95
24 1 0.05
ACGTcount: A:0.68, C:0.07, G:0.05, T:0.20
Consensus pattern (23 bp):
AAACATAGAATAAAAAATAATTA
Found at i:3939736 original size:25 final size:23
Alignment explanation
Indices: 3939708--3939769 Score: 63
Period size: 25 Copynumber: 2.6 Consensus size: 23
3939698 TTGTTTTAAA
3939708 TATAAAAAAATATAAACATGATATT
1 TATAAAAAAATATAAACAT-A-ATT
* *
3939733 TATAAAAATATTTAAAACATAATT
1 TATAAAAAAATAT-AAACATAATT
*
3939757 TA-AAAATAATATA
1 TATAAAAAAATATA
3939770 TACACAACAC
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 1 0.03
23 7 0.23
24 5 0.16
25 12 0.39
26 6 0.19
ACGTcount: A:0.61, C:0.03, G:0.02, T:0.34
Consensus pattern (23 bp):
TATAAAAAAATATAAACATAATT
Found at i:3939830 original size:35 final size:33
Alignment explanation
Indices: 3939789--3939885 Score: 83
Period size: 35 Copynumber: 2.8 Consensus size: 33
3939779 CGAATATATA
3939789 TACATATAAAAATATACATAAA-ATAAAATGAATTAT
1 TACATATAAAAA-ATACATAAAGATAAAAT--ATT-T
* *
3939825 T-CATATATAAAAA-ATATAAAGATATAATATTT
1 TACATATA-AAAAATACATAAAGATAAAATATTT
*
3939857 TACATATAAAAAAATAACATAAATATAAA
1 TACATAT-AAAAAAT-ACATAAAGATAAA
3939886 TATAAATATT
Statistics
Matches: 50, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
32 2 0.04
33 13 0.26
34 7 0.14
35 23 0.46
36 5 0.10
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.31
Consensus pattern (33 bp):
TACATATAAAAAATACATAAAGATAAAATATTT
Found at i:3939924 original size:21 final size:21
Alignment explanation
Indices: 3939894--3939934 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
3939884 AATATAAATA
3939894 TTTTTTTTTCTTTTT-TCCTT
1 TTTTTTTTTCTTTTTCTCCTT
3939914 TTTTTTCTTTCTTTTTCTCCT
1 TTTTTT-TTTCTTTTTCTCCT
3939935 GCCAAATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.32
21 9 0.47
22 4 0.21
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (21 bp):
TTTTTTTTTCTTTTTCTCCTT
Found at i:3939929 original size:22 final size:20
Alignment explanation
Indices: 3939894--3939934 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
3939884 AATATAAATA
*
3939894 TTTTTTTTTCTTTTTTCCTT
1 TTTTTTTTTCTTTTCTCCTT
3939914 TTTTTTCTTTCTTTTTCTCCT
1 TTTTTT-TTTC-TTTTCTCCT
3939935 GCCAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTTTTTCTTTTCTCCTT
Found at i:3940074 original size:26 final size:26
Alignment explanation
Indices: 3940045--3940105 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
3940035 TCGAAGATTT
*
3940045 TTAATATT-TATAAATATTTAATTAAA
1 TTAATATTATATAAAT-TTAAATTAAA
*
3940071 TTAATAATTATATAAATTTAAATTATA
1 TTAAT-ATTATATAAATTTAAATTAAA
3940098 TT-ATATTA
1 TTAATATTA
3940106 AATATTTATT
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
25 4 0.13
26 7 0.23
27 13 0.42
28 7 0.23
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (26 bp):
TTAATATTATATAAATTTAAATTAAA
Found at i:3940083 original size:22 final size:21
Alignment explanation
Indices: 3940058--3940108 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 21
3940048 ATATTTATAA
*
3940058 ATATTTAA-TTAAATTAATAATT
1 ATATTAAATTTAAATT-AT-ATT
3940080 ATA-TAAATTTAAATTATATT
1 ATATTAAATTTAAATTATATT
3940100 ATATTAAAT
1 ATATTAAAT
3940109 ATTTATTATT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 6 0.23
21 10 0.38
22 10 0.38
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
ATATTAAATTTAAATTATATT
Found at i:3940125 original size:19 final size:19
Alignment explanation
Indices: 3940092--3940148 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
3940082 ATAAATTTAA
3940092 ATTATATTATATTAAATATTT
1 ATTAT-TTAT-TTAAATATTT
3940113 ATTATTTATTTAAATATTT
1 ATTATTTATTTAAATATTT
*
3940132 ATTA-TAATTTAAA-ATTT
1 ATTATTTATTTAAATATTT
3940149 TATGTAATTG
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
17 4 0.11
18 8 0.23
19 14 0.40
20 4 0.11
21 5 0.14
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (19 bp):
ATTATTTATTTAAATATTT
Found at i:3940151 original size:18 final size:18
Alignment explanation
Indices: 3940055--3940148 Score: 78
Period size: 16 Copynumber: 5.5 Consensus size: 18
3940045 TTAATATTTA
3940055 TAAATATTTAATTA-AA-T
1 TAAATATTT-ATTATAATT
*
3940072 T-AATAATTA-TATAAATT
1 TAAATATTTATTAT-AATT
*
3940089 TAAAT-TATATTAT-A-T
1 TAAATATTTATTATAATT
*
3940104 TAAATATTTATTATTTATT
1 TAAATATTTATTA-TAATT
3940123 TAAATATTTATTATAATT
1 TAAATATTTATTATAATT
3940141 TAAA-ATTT
1 TAAATATTT
3940149 TATGTAATTG
Statistics
Matches: 63, Mismatches: 5, Indels: 18
0.73 0.06 0.21
Matches are distributed among these distances:
14 2 0.03
15 7 0.11
16 15 0.24
17 10 0.16
18 15 0.24
19 14 0.22
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TAAATATTTATTATAATT
Done.