Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold48
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 4619657
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Warning! 18863 characters in sequence are not A, C, G, or T
File 27 of 27
Found at i:4498954 original size:1 final size:1
Alignment explanation
Indices: 4498950--4498995 Score: 74
Period size: 1 Copynumber: 46.0 Consensus size: 1
4498940 TTCAATCAAC
* *
4498950 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
4498996 CAAGCAATGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
1 41 1.00
ACGTcount: A:0.96, C:0.04, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:4503017 original size:16 final size:16
Alignment explanation
Indices: 4502991--4503029 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
4502981 TGAACTCTCT
4502991 TTATG-TTCTATGAAA
1 TTATGATTCTATGAAA
*
4503006 TTATGATTCTATGCAA
1 TTATGATTCTATGAAA
4503022 TTATGATT
1 TTATGATT
4503030 ATGTTTTGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.31, C:0.08, G:0.13, T:0.49
Consensus pattern (16 bp):
TTATGATTCTATGAAA
Found at i:4505242 original size:23 final size:23
Alignment explanation
Indices: 4505212--4505257 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
4505202 CATTAACCGT
4505212 TATATGTTTTACATATATACTCC
1 TATATGTTTTACATATATACTCC
4505235 TATATGTTTTACATATATACTCC
1 TATATGTTTTACATATATACTCC
4505258 ATGGTATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.04, T:0.48
Consensus pattern (23 bp):
TATATGTTTTACATATATACTCC
Found at i:4508126 original size:20 final size:20
Alignment explanation
Indices: 4508101--4508142 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
4508091 ATAAAATATT
4508101 AAAA-TTAAAAATTTTATAAA
1 AAAATTTAAAAA-TTTATAAA
4508121 AAAATTTAAAAATTTATAAA
1 AAAATTTAAAAATTTATAAA
4508141 AA
1 AA
4508143 TTTGAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAATTTAAAAATTTATAAA
Found at i:4508596 original size:27 final size:28
Alignment explanation
Indices: 4508546--4508602 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 28
4508536 AAAAATTTAC
**
4508546 TTAAAAATAATAATATTTTGATAAATTA
1 TTAAAAATAATAATATTTAAATAAATTA
* *
4508574 TTAAAAA-AATACTATTTAAATAATTTA
1 TTAAAAATAATAATATTTAAATAAATTA
4508601 TT
1 TT
4508603 TGTAAATTAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (28 bp):
TTAAAAATAATAATATTTAAATAAATTA
Found at i:4508884 original size:2 final size:2
Alignment explanation
Indices: 4508879--4508903 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
4508869 ACTAAAGATC
4508879 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
4508904 TCTACATTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4510603 original size:2 final size:2
Alignment explanation
Indices: 4510590--4510621 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4510580 TGGGAAGAGA
*
4510590 AT AT AT AC AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4510622 CACATTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4514656 original size:19 final size:19
Alignment explanation
Indices: 4514634--4514670 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
4514624 TAAACACAAT
4514634 ATAAAAAAATAAATATAAC
1 ATAAAAAAATAAATATAAC
* *
4514653 ATAAATATATAAATATAA
1 ATAAAAAAATAAATATAA
4514671 AAAATTTATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (19 bp):
ATAAAAAAATAAATATAAC
Found at i:4514691 original size:36 final size:33
Alignment explanation
Indices: 4514631--4514700 Score: 95
Period size: 36 Copynumber: 2.0 Consensus size: 33
4514621 AATTAAACAC
4514631 AATATAAAAAAATAAATATAACATAAATATATA
1 AATATAAAAAAATAAATATAACATAAATATATA
* *
4514664 AATATAAAAAATTTATAAATATTACATAAATTTATA
1 AATATAAAAAA---ATAAATATAACATAAATATATA
4514700 A
1 A
4514701 TGTTTTAAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
33 11 0.34
36 21 0.66
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (33 bp):
AATATAAAAAAATAAATATAACATAAATATATA
Found at i:4514694 original size:19 final size:19
Alignment explanation
Indices: 4514642--4514700 Score: 77
Period size: 19 Copynumber: 3.2 Consensus size: 19
4514632 ATATAAAAAA
* *
4514642 ATAAATATAACATAAATAT
1 ATAAATATTACATAAATTT
*
4514661 ATAAATA-TA-AAAAATTT
1 ATAAATATTACATAAATTT
4514678 ATAAATATTACATAAATTT
1 ATAAATATTACATAAATTT
4514697 ATAA
1 ATAA
4514701 TGTTTTAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 13 0.38
18 3 0.09
19 18 0.53
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (19 bp):
ATAAATATTACATAAATTT
Found at i:4514792 original size:27 final size:28
Alignment explanation
Indices: 4514756--4514868 Score: 91
Period size: 26 Copynumber: 4.3 Consensus size: 28
4514746 TTTTTCTCAC
*
4514756 ATATATAAAATAAT-AAATACATTA-AA
1 ATATATAAAATAATAAAATAAATTATAA
*
4514782 ATATATAAAA-AATAAAATAAATTATTA
1 ATATATAAAATAATAAAATAAATTATAA
* *
4514809 ATATATCAAA-AATACAA-AAA-TAT-A
1 ATATATAAAATAATAAAATAAATTATAA
* *
4514833 ATATTTAAATATAA-AAAATAAA-TACAA
1 ATATATAAA-ATAATAAAATAAATTATAA
*
4514860 AAATATAAA
1 ATATATAAA
4514869 TTATTTTTAT
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
24 8 0.11
25 10 0.14
26 29 0.41
27 24 0.34
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (28 bp):
ATATATAAAATAATAAAATAAATTATAA
Found at i:4514799 original size:16 final size:17
Alignment explanation
Indices: 4514760--4514801 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
4514750 TCTCACATAT
4514760 ATAAAATAATAAATACA
1 ATAAAATAATAAATACA
*
4514777 TTAAAATATATAAA-A-A
1 ATAAAATA-ATAAATACA
4514793 ATAAAATAA
1 ATAAAATAA
4514802 ATTATTAATA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
15 1 0.05
16 8 0.36
17 8 0.36
18 5 0.23
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (17 bp):
ATAAAATAATAAATACA
Found at i:4514829 original size:30 final size:30
Alignment explanation
Indices: 4514784--4514852 Score: 76
Period size: 30 Copynumber: 2.4 Consensus size: 30
4514774 ACATTAAAAT
4514784 ATATAAAAAAT---AAAATA-AAT-TATTAA
1 ATATAAAAAATACAAAAATATAATAT-TTAA
*
4514810 TATATCAAAAATACAAAAATATAATATTTAA
1 -ATATAAAAAATACAAAAATATAATATTTAA
4514841 ATATAAAAAATA
1 ATATAAAAAATA
4514853 AATACAAAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
27 10 0.29
30 17 0.49
31 7 0.20
32 1 0.03
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.30
Consensus pattern (30 bp):
ATATAAAAAATACAAAAATATAATATTTAA
Found at i:4514892 original size:8 final size:8
Alignment explanation
Indices: 4514881--4514937 Score: 69
Period size: 8 Copynumber: 7.0 Consensus size: 8
4514871 ATTTTTATAA
4514881 TTTTTTTC
1 TTTTTTTC
4514889 TTTTTTTC
1 TTTTTTTC
*
4514897 TTCTTTTC
1 TTTTTTTC
*
4514905 TTTTCTTC
1 TTTTTTTC
*
4514913 TTTCTTTC
1 TTTTTTTC
*
4514921 TTTCTTTC
1 TTTTTTTC
4514929 TTTCTTTTC
1 TTT-TTTTC
4514938 CACCACGTAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
8 38 0.90
9 4 0.10
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (8 bp):
TTTTTTTC
Found at i:4514919 original size:4 final size:4
Alignment explanation
Indices: 4514885--4514935 Score: 61
Period size: 4 Copynumber: 12.8 Consensus size: 4
4514875 TTATAATTTT
*
4514885 TTTC TTTT TTTC -TTC TTTTC TTT- TCTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC -TTTC TTTC T-TTC TTTC TTTC TTTC TTTC TTTC
4514933 TTT
1 TTT
4514936 TCCACCACGT
Statistics
Matches: 41, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
3 4 0.10
4 33 0.80
5 4 0.10
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (4 bp):
TTTC
Found at i:4516196 original size:13 final size:12
Alignment explanation
Indices: 4516178--4516220 Score: 50
Period size: 12 Copynumber: 3.4 Consensus size: 12
4516168 AAATAAATAT
4516178 AATATTTATAAAA
1 AATATTTA-AAAA
*
4516191 AATATTTAAAAT
1 AATATTTAAAAA
*
4516203 ATTATTTAAAAA
1 AATATTTAAAAA
4516215 TAATAT
1 -AATAT
4516221 ACACACAACA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
12 13 0.52
13 12 0.48
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AATATTTAAAAA
Found at i:4516208 original size:25 final size:26
Alignment explanation
Indices: 4516171--4516220 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
4516161 CATAAAAAAA
4516171 TAAATATAATATTTATAAAA-AATATT
1 TAAATATAATATTTA-AAAATAATATT
*
4516197 TAAA-ATATTATTTAAAAATAATAT
1 TAAATATAATATTTAAAAATAATAT
4516221 ACACACAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 4 0.18
25 14 0.64
26 4 0.18
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (26 bp):
TAAATATAATATTTAAAAATAATATT
Found at i:4516311 original size:32 final size:32
Alignment explanation
Indices: 4516267--4516336 Score: 81
Period size: 32 Copynumber: 2.2 Consensus size: 32
4516257 TACATAAAAT
*
4516267 AAAATAATATA-TTAATATATAAAAAATATACA
1 AAAATAATATATTTAACATATAAAAAATA-ACA
*
4516299 AAAAT-ATAATATTTTACATATAAAAAATAACA
1 AAAATAAT-ATATTTAACATATAAAAAATAACA
*
4516331 CAAATA
1 AAAATA
4516337 CAAACACATA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
31 2 0.06
32 15 0.47
33 15 0.47
ACGTcount: A:0.64, C:0.06, G:0.00, T:0.30
Consensus pattern (32 bp):
AAAATAATATATTTAACATATAAAAAATAACA
Found at i:4516325 original size:34 final size:36
Alignment explanation
Indices: 4516242--4516327 Score: 97
Period size: 33 Copynumber: 2.4 Consensus size: 36
4516232 GAATACACAT
*
4516242 ATATATATATAAATATACATAAAATAAAATAATATATTA
1 ATATATA-AAAAATATACATAAAAT--AATAATATATTA
*
4516281 ATATATAAAAAATATACA-AAAAT-ATAATAT-TTT
1 ATATATAAAAAATATACATAAAATAATAATATATTA
*
4516314 ACATATAAAAAATA
1 ATATATAAAAAATA
4516328 ACACAAATAC
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
33 15 0.34
34 7 0.16
37 5 0.11
38 10 0.23
39 7 0.16
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (36 bp):
ATATATAAAAAATATACATAAAATAATAATATATTA
Found at i:4526956 original size:4 final size:4
Alignment explanation
Indices: 4526947--4526982 Score: 65
Period size: 4 Copynumber: 9.2 Consensus size: 4
4526937 ACATAATTTA
4526947 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CT-T CTGT C
1 CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT CTGT C
4526983 ATCTATCAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 3 0.10
4 28 0.90
ACGTcount: A:0.00, C:0.28, G:0.22, T:0.50
Consensus pattern (4 bp):
CTGT
Found at i:4527600 original size:2 final size:2
Alignment explanation
Indices: 4527593--4527627 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4527583 ATGGTCCTCT
4527593 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4527628 TATCATTAGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:4527985 original size:2 final size:2
Alignment explanation
Indices: 4527978--4528008 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
4527968 AATGGAGAGG
4527978 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4528009 ATAATTATCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:4533904 original size:2 final size:2
Alignment explanation
Indices: 4533899--4533928 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
4533889 GTGCACTCGC
4533899 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4533929 GGGATGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4536119 original size:2 final size:2
Alignment explanation
Indices: 4536112--4536139 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
4536102 GCTCTCCAAA
4536112 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4536140 TGTACGGAGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4541198 original size:2 final size:2
Alignment explanation
Indices: 4541188--4541219 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
4541178 ATATATAAAT
*
4541188 AG AG GG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
4541220 GGAGCAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (2 bp):
AG
Found at i:4546560 original size:2 final size:2
Alignment explanation
Indices: 4546555--4546590 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4546545 ATACATATAT
4546555 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
4546591 GTAAGTTTAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:4550174 original size:2 final size:2
Alignment explanation
Indices: 4550169--4550198 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
4550159 ATTTTTTTAC
4550169 TA TA TA TA T- TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4550199 TGCAATTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:4552720 original size:29 final size:29
Alignment explanation
Indices: 4552687--4552743 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
4552677 GGTTAAAATA
4552687 TAAATAAATTATCAAAATATTATTATTTT
1 TAAATAAATTATCAAAATATTATTATTTT
* * *
4552716 TAAATTATTTATCAAATTATTATTATTT
1 TAAATAAATTATCAAAATATTATTATTT
4552744 GATGAGAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.44, C:0.04, G:0.00, T:0.53
Consensus pattern (29 bp):
TAAATAAATTATCAAAATATTATTATTTT
Found at i:4553453 original size:19 final size:18
Alignment explanation
Indices: 4553428--4553492 Score: 68
Period size: 19 Copynumber: 3.8 Consensus size: 18
4553418 ATTTCAACGA
4553428 TTTGTATCGATACATAAG
1 TTTGTATCGATACATAAG
4553446 TGTTGTATCGATAC--AA-
1 T-TTGTATCGATACATAAG
*
4553462 --TGTATCAATACATAAG
1 TTTGTATCGATACATAAG
4553478 TTTTGTATCGATACA
1 -TTTGTATCGATACA
4553493 ATGTATCGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 13
0.72 0.04 0.25
Matches are distributed among these distances:
13 10 0.26
15 2 0.05
17 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.38
Consensus pattern (18 bp):
TTTGTATCGATACATAAG
Found at i:4553466 original size:32 final size:32
Alignment explanation
Indices: 4553430--4553500 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 32
4553420 TTCAACGATT
4553430 TGTATCGATACATAAGTGTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
* *
4553462 TGTATCAATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTGTTGTATCGATACAA
4553494 TGTATCG
1 TGTATCG
4553501 CTACGAAGCT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.37
Consensus pattern (32 bp):
TGTATCGATACATAAGTGTTGTATCGATACAA
Found at i:4553624 original size:52 final size:52
Alignment explanation
Indices: 4553568--4553692 Score: 178
Period size: 52 Copynumber: 2.4 Consensus size: 52
4553558 TGATCTTTGT
4553568 ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGC
1 ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGC
** * * * * *
4553620 ATCGATACATATAGGCAATTTTGTCCATATGTATCGATATACTATGAAATGT
1 ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGC
*
4553672 ATCGATACATGCAGGTAAATT
1 ATCGATACATGCAGGCAAATT
4553693 CTCATATTTC
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
52 62 1.00
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.30
Consensus pattern (52 bp):
ATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAATGC
Found at i:4554562 original size:21 final size:22
Alignment explanation
Indices: 4554528--4554568 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
4554518 TCATGTTGAC
4554528 AGCTCATGATTCATGCATTTTG
1 AGCTCATGATTCATGCATTTTG
*
4554550 AGCT-ATGTTTCATGCATTT
1 AGCTCATGATTCATGCATTT
4554569 ATGGCATGTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.22, C:0.17, G:0.17, T:0.44
Consensus pattern (22 bp):
AGCTCATGATTCATGCATTTTG
Found at i:4555232 original size:13 final size:13
Alignment explanation
Indices: 4555214--4555238 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4555204 ACCAAGAAAA
4555214 TGTATCGATACAT
1 TGTATCGATACAT
4555227 TGTATCGATACA
1 TGTATCGATACA
4555239 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:4555331 original size:51 final size:52
Alignment explanation
Indices: 4555247--4555374 Score: 222
Period size: 51 Copynumber: 2.5 Consensus size: 52
4555237 CACTGATCTT
* *
4555247 TGTATCGATACATGCAGGCAAATTTGCCGAGATGTATTGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
*
4555299 TGTATCG-TACATACAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
1 TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
4555350 TGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACATGCAGGCAAATTT
4555375 TCATATTTCG
Statistics
Matches: 71, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
51 48 0.68
52 23 0.32
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (52 bp):
TGTATCGATACATGCAGGCAAATTTGCCCAGATGTATCGATACACTATGAAA
Found at i:4559368 original size:27 final size:27
Alignment explanation
Indices: 4559316--4559372 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
4559306 GCCATATTTC
* * **
4559316 CCTACTCAATCTCCATACTCGTCATAT
1 CCTACTCAACCTCCATACCCAACATAT
4559343 CCTACTCAACCTCCATACCCAACATAT
1 CCTACTCAACCTCCATACCCAACATAT
4559370 CCT
1 CCT
4559373 GCCACGACCC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.28, C:0.42, G:0.02, T:0.28
Consensus pattern (27 bp):
CCTACTCAACCTCCATACCCAACATAT
Found at i:4559777 original size:75 final size:75
Alignment explanation
Indices: 4559673--4559928 Score: 291
Period size: 75 Copynumber: 3.3 Consensus size: 75
4559663 ATGTGAAATA
4559673 TGCAGATTATCTCGGATTAGTTGTTGATAGTAATAATGTAAAATATACAGAAACATTTGTTGATT
1 TGCAGATTATCTCGGATTAGTTGTTGATAGTAATAATGTAAAATATACAGAAACATTTGTTGATT
4559738 GTAGTTATCG
66 GTAGTTATCG
4559748 TGCAGATTATCTCGGATTAGTTGTTGATAGTAGTAATATGAAATAGTAATGTGAA-ATATGCAGA
1 TGCAGATTATCTCGGATTAGTTGTTG--A-TAGT-A-AT--AAT-GTAA----AATATA--CAGA
*
4559812 AACATTTGTTTATTGTAGTTATCG
52 AACATTTGTTGATTGTAGTTATCG
* * * * * *
4559836 -GCAGATTATCTCGGATTAGTTGTTGATAATAGTATTGTAAAATATGCTGAAATATTTGTTGATT
1 TGCAGATTATCTCGGATTAGTTGTTGATAGTAATAATGTAAAATATACAGAAACATTTGTTGATT
*
4559900 GTAATTATCG
66 GTAGTTATCG
*
4559910 TGCAGATTATCTCGAATTA
1 TGCAGATTATCTCGGATTA
4559929 TCGTTTCATC
Statistics
Matches: 155, Mismatches: 10, Indels: 32
0.79 0.05 0.16
Matches are distributed among these distances:
74 24 0.15
75 45 0.29
76 2 0.01
77 1 0.01
78 4 0.03
79 5 0.03
80 4 0.03
82 4 0.03
83 5 0.03
84 3 0.02
85 1 0.01
86 3 0.02
87 27 0.17
88 27 0.17
ACGTcount: A:0.32, C:0.08, G:0.20, T:0.39
Consensus pattern (75 bp):
TGCAGATTATCTCGGATTAGTTGTTGATAGTAATAATGTAAAATATACAGAAACATTTGTTGATT
GTAGTTATCG
Found at i:4559812 original size:88 final size:87
Alignment explanation
Indices: 4559706--4559869 Score: 283
Period size: 88 Copynumber: 1.9 Consensus size: 87
4559696 TTGATAGTAA
4559706 TAATGTAAAATATACAGAAACATTTGTTGATTGTAGTTATCGTGCAGATTATCTCGGATTAGTTG
1 TAATGTAAAATATACAGAAACATTTGTTGATTGTAGTTATCG-GCAGATTATCTCGGATTAGTTG
*
4559771 TTGATAGTAGTAATATGAAATAG
65 TTGATAATAGTAATATGAAATAG
* * *
4559794 TAATGTGAAATATGCAGAAACATTTGTTTATTGTAGTTATCGGCAGATTATCTCGGATTAGTTGT
1 TAATGTAAAATATACAGAAACATTTGTTGATTGTAGTTATCGGCAGATTATCTCGGATTAGTTGT
4559859 TGATAATAGTA
66 TGATAATAGTA
4559870 TTGTAAAATA
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
87 33 0.46
88 39 0.54
ACGTcount: A:0.34, C:0.07, G:0.21, T:0.38
Consensus pattern (87 bp):
TAATGTAAAATATACAGAAACATTTGTTGATTGTAGTTATCGGCAGATTATCTCGGATTAGTTGT
TGATAATAGTAATATGAAATAG
Found at i:4560781 original size:2 final size:2
Alignment explanation
Indices: 4560721--4560764 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
4560711 CCGTCCCACT
4560721 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4560763 TC
1 TC
4560765 CCCTCAACTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:4564174 original size:2 final size:2
Alignment explanation
Indices: 4564167--4564218 Score: 68
Period size: 2 Copynumber: 26.0 Consensus size: 2
4564157 GTTGTCTTGA
* * * *
4564167 AT AT AT AT AT AC AT AT AT AT AT AT AG CT AC AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4564209 AT AT AT AT AT
1 AT AT AT AT AT
4564219 CTGTATTATG
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.48, C:0.06, G:0.02, T:0.44
Consensus pattern (2 bp):
AT
Found at i:4564522 original size:2 final size:2
Alignment explanation
Indices: 4564515--4564557 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
4564505 TATTCATGAT
* *
4564515 TC TC TC TC TC TC TC TC TC TC TC TC TC TG TC TG TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
4564557 T
1 T
4564558 GTATATGTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.00, C:0.44, G:0.05, T:0.51
Consensus pattern (2 bp):
TC
Found at i:4564616 original size:2 final size:2
Alignment explanation
Indices: 4564559--4564597 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
4564549 TCTCTCTCTG
* *
4564559 TA TA TG TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
4564598 GCTTAACCCT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (2 bp):
TA
Found at i:4567266 original size:44 final size:44
Alignment explanation
Indices: 4567187--4567319 Score: 176
Period size: 44 Copynumber: 3.0 Consensus size: 44
4567177 ATTAATTATT
* * * *
4567187 TTATCTCTTATTATATTAAATTAATTATGAGATAAATAAAAAAG
1 TTATCTCTAATTAAATTAAATTAATTATAAGATAAATAAAAAAA
* * * *
4567231 TTTTTTCTAATTAATTTAAATTAATTATAAAATAAATAAAAAAA
1 TTATCTCTAATTAAATTAAATTAATTATAAGATAAATAAAAAAA
* *
4567275 TTATCTCTAATTAAATTAAATTAATCATAAGATAAATTAAAAAA
1 TTATCTCTAATTAAATTAAATTAATTATAAGATAAATAAAAAAA
4567319 T
1 T
4567320 AAGTTAATTT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 75 1.00
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.41
Consensus pattern (44 bp):
TTATCTCTAATTAAATTAAATTAATTATAAGATAAATAAAAAAA
Found at i:4570871 original size:3 final size:3
Alignment explanation
Indices: 4570863--4570898 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
4570853 AAAGCAGGAC
4570863 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
4570899 TCAACTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:4570944 original size:2 final size:2
Alignment explanation
Indices: 4570937--4570971 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
4570927 TAAGATGAAA
4570937 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
4570972 AAAGAAGATG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:4571305 original size:22 final size:23
Alignment explanation
Indices: 4571269--4571312 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
4571259 ATTGAAGATA
*
4571269 ATCAACTTAATTTTTTAAAAAAT
1 ATCAACTTAACTTTTTAAAAAAT
4571292 ATCAA-TTAACTTTTTAAAAAA
1 ATCAACTTAACTTTTTAAAAAA
4571313 CTTTCGATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.50, C:0.09, G:0.00, T:0.41
Consensus pattern (23 bp):
ATCAACTTAACTTTTTAAAAAAT
Found at i:4572005 original size:2 final size:2
Alignment explanation
Indices: 4571998--4572026 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
4571988 AGATAAAGAT
4571998 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
4572027 GCATATTGCC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:4581009 original size:29 final size:29
Alignment explanation
Indices: 4580964--4581019 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
4580954 CACAACAAGA
*
4580964 CTTCACCCTTCACTTGTTCAGGAAATTTG
1 CTTCACCCTTCACTTGTTCAAGAAATTTG
* *
4580993 CTTCACCCTTTAGTTGTTCAAGAAATT
1 CTTCACCCTTCACTTGTTCAAGAAATT
4581020 AACAGGTGAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.12, T:0.39
Consensus pattern (29 bp):
CTTCACCCTTCACTTGTTCAAGAAATTTG
Found at i:4583259 original size:2 final size:2
Alignment explanation
Indices: 4583247--4583280 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
4583237 TTCATATTAA
4583247 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
4583281 AATTGCAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:4583981 original size:41 final size:40
Alignment explanation
Indices: 4583895--4583985 Score: 107
Period size: 38 Copynumber: 2.2 Consensus size: 40
4583885 TAAATAAAAA
*
4583895 ATTTTATTTATTTAAATTTATATTAAAATAAATTTAAAATTTT
1 ATTTT-TTTATTTAAATATATATTAAAATAAA--TAAAATTTT
4583938 ATTTTTTTATTTAAA-ATATATTAAAATATAA-AAAA-TTT
1 ATTTTTTTATTTAAATATATATTAAAATA-AATAAAATTTT
*
4583976 ATTATTTTAT
1 ATTTTTTTAT
4583986 AATTTAATTT
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
38 12 0.27
39 4 0.09
41 12 0.27
42 12 0.27
43 5 0.11
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (40 bp):
ATTTTTTTATTTAAATATATATTAAAATAAATAAAATTTT
Found at i:4584007 original size:20 final size:20
Alignment explanation
Indices: 4583984--4584032 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
4583974 TTATTATTTT
4583984 ATAATTTAATTTAAAT-AAAA
1 ATAATTTAA-TTAAATGAAAA
* * *
4584004 ATAATTTTATTATATGAATA
1 ATAATTTAATTAAATGAAAA
4584024 ATAATTTAA
1 ATAATTTAA
4584033 ATCAAATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 5 0.21
20 19 0.79
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (20 bp):
ATAATTTAATTAAATGAAAA
Found at i:4586224 original size:6 final size:6
Alignment explanation
Indices: 4586215--4586248 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
4586205 GTACATGGAC
*
4586215 ATGGCT ATGGCT GTGGCT ATGGCT ATGGCT ATGG
1 ATGGCT ATGGCT ATGGCT ATGGCT ATGGCT ATGG
4586249 GTCAGTCCCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.15, C:0.15, G:0.38, T:0.32
Consensus pattern (6 bp):
ATGGCT
Found at i:4593855 original size:20 final size:21
Alignment explanation
Indices: 4593832--4593886 Score: 69
Period size: 20 Copynumber: 2.7 Consensus size: 21
4593822 TAATTTATTT
4593832 TATATATATTTTTAT-ATGTA
1 TATATATATTTTTATCATGTA
* *
4593852 TATATATATTTGTATCATGTG
1 TATATATATTTTTATCATGTA
*
4593873 TATAT-CATTTTTAT
1 TATATATATTTTTAT
4593887 GTTATGTTAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 21 0.70
21 9 0.30
ACGTcount: A:0.31, C:0.04, G:0.07, T:0.58
Consensus pattern (21 bp):
TATATATATTTTTATCATGTA
Found at i:4594185 original size:9 final size:9
Alignment explanation
Indices: 4594158--4594207 Score: 57
Period size: 9 Copynumber: 5.4 Consensus size: 9
4594148 GAAAAAGATG
4594158 GAAAGAAAA
1 GAAAGAAAA
*
4594167 AAAAGAAAA
1 GAAAGAAAA
4594176 GAAAGAAAA
1 GAAAGAAAA
4594185 GGAAA-AAAA
1 -GAAAGAAAA
*
4594194 GGAAATAAAA
1 -GAAAGAAAA
4594204 GAAA
1 GAAA
4594208 ATTTAATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
9 29 0.78
10 8 0.22
ACGTcount: A:0.78, C:0.00, G:0.20, T:0.02
Consensus pattern (9 bp):
GAAAGAAAA
Found at i:4594193 original size:18 final size:18
Alignment explanation
Indices: 4594147--4594208 Score: 63
Period size: 18 Copynumber: 3.3 Consensus size: 18
4594137 TCAATGGGAG
*
4594147 AGAAAAAGATGGAAAGAAA
1 AGAAAAA-AAGGAAAGAAA
*
4594166 A-AAAAGAAAAGAAAGAAA
1 AGAAAA-AAAGGAAAGAAA
*
4594184 AGGAAAAAAAGGAAATAAA
1 A-GAAAAAAAGGAAAGAAA
4594203 AGAAAA
1 AGAAAA
4594209 TTTAATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
18 19 0.53
19 13 0.36
20 4 0.11
ACGTcount: A:0.76, C:0.00, G:0.21, T:0.03
Consensus pattern (18 bp):
AGAAAAAAAGGAAAGAAA
Found at i:4594198 original size:24 final size:24
Alignment explanation
Indices: 4594162--4594208 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
4594152 AAGATGGAAA
4594162 GAAAAAAAAGAAA-AGAAAGAAAAG
1 GAAAAAAAAGAAATA-AAAGAAAAG
*
4594186 GAAAAAAAGGAAATAAAAGAAAA
1 GAAAAAAAAGAAATAAAAGAAAA
4594209 TTTAATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.02
Consensus pattern (24 bp):
GAAAAAAAAGAAATAAAAGAAAAG
Found at i:4594316 original size:11 final size:11
Alignment explanation
Indices: 4594300--4594364 Score: 50
Period size: 11 Copynumber: 6.2 Consensus size: 11
4594290 CTATATATTT
4594300 TTATATTTATA
1 TTATATTTATA
4594311 TTATA-TT-TA
1 TTATATTTATA
4594320 TT-T-TTTATA
1 TTATATTTATA
4594329 TTATATTT-TAA
1 TTATATTTAT-A
*
4594340 TTATTTTTGATA
1 TTATATTT-ATA
* *
4594352 TCATATTTTTA
1 TTATATTTATA
4594363 TT
1 TT
4594365 TTTTAATATA
Statistics
Matches: 42, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
8 3 0.07
9 8 0.19
10 4 0.10
11 19 0.45
12 7 0.17
13 1 0.02
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (11 bp):
TTATATTTATA
Found at i:4594332 original size:23 final size:22
Alignment explanation
Indices: 4594297--4594376 Score: 78
Period size: 23 Copynumber: 3.7 Consensus size: 22
4594287 TATCTATATA
4594297 TTTTTATATTTATATTATATTTAT
1 TTTTTATA-TTATATT-TATTTAT
*
4594321 TTTTTATATTATATTTTAATTAT
1 TTTTTATATTATA-TTTATTTAT
* *
4594344 TTTTGATATCATA-TT-TTTAT
1 TTTTTATATTATATTTATTTAT
4594364 TTTTTA-A-TATATT
1 TTTTTATATTATATT
4594377 CAAAGTAGTA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
18 3 0.06
19 2 0.04
20 9 0.19
21 2 0.04
23 22 0.46
24 10 0.21
ACGTcount: A:0.29, C:0.01, G:0.01, T:0.69
Consensus pattern (22 bp):
TTTTTATATTATATTTATTTAT
Found at i:4594593 original size:16 final size:16
Alignment explanation
Indices: 4594570--4594604 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
4594560 TTTAATTTTT
4594570 ATTAAAAATAATTAAAA
1 ATTAAAAA-AATTAAAA
*
4594587 ATTAAAAAAATTTAAA
1 ATTAAAAAAATTAAAA
4594603 AT
1 AT
4594605 GTTATTATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
ATTAAAAAAATTAAAA
Found at i:4595231 original size:23 final size:22
Alignment explanation
Indices: 4595205--4595261 Score: 71
Period size: 23 Copynumber: 2.6 Consensus size: 22
4595195 TGTATTTAAA
*
4595205 ATAT-TATATTTTTATTTTTTT
1 ATATATATATTTTTATTTTATT
* *
4595226 ATATATAAATAATTTATTTTATT
1 ATATATATAT-TTTTATTTTATT
4595249 ATATATATATTTT
1 ATATATATATTTT
4595262 ATATGTATGT
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
21 4 0.14
22 6 0.21
23 19 0.66
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (22 bp):
ATATATATATTTTTATTTTATT
Found at i:4595248 original size:28 final size:29
Alignment explanation
Indices: 4595187--4595245 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 29
4595177 CATGTTTGTG
*
4595187 TTATTTTTTGTATTTAAAATATTATATTT
1 TTATTTTTTGTATATAAAATATTATATTT
4595216 TTATTTTTT-TATATATAAATAATT-TATTT
1 TTATTTTTTGTATATA-AAAT-ATTATATTT
4595245 T
1 T
4595246 ATTATATATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
28 5 0.19
29 19 0.70
30 3 0.11
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (29 bp):
TTATTTTTTGTATATAAAATATTATATTT
Found at i:4597246 original size:2 final size:2
Alignment explanation
Indices: 4597239--4597274 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
4597229 TATTATAAAC
4597239 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4597275 TACATAGTGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:4606827 original size:4 final size:4
Alignment explanation
Indices: 4606818--4606854 Score: 74
Period size: 4 Copynumber: 9.2 Consensus size: 4
4606808 CACAAGGAGA
4606818 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
1 ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT ACAT A
4606855 TTCTTATAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ACAT
Found at i:4608931 original size:27 final size:27
Alignment explanation
Indices: 4608863--4608933 Score: 92
Period size: 27 Copynumber: 2.6 Consensus size: 27
4608853 CAAAATAATG
* *
4608863 GGTGCAGGTGAC-GGCGGCAACTTTGCT
1 GGTGCAGGTG-CTGGTGGAAACTTTGCT
4608890 GGTGCAGGTGCTGGTGGAAACTTTGCT
1 GGTGCAGGTGCTGGTGGAAACTTTGCT
4608917 GGTG-ACGGTGCTGGTGG
1 GGTGCA-GGTGCTGGTGG
4608934 TGTTTGGGTT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
26 2 0.05
27 38 0.95
ACGTcount: A:0.13, C:0.17, G:0.45, T:0.25
Consensus pattern (27 bp):
GGTGCAGGTGCTGGTGGAAACTTTGCT
Found at i:4609160 original size:39 final size:39
Alignment explanation
Indices: 4609124--4609238 Score: 167
Period size: 39 Copynumber: 2.9 Consensus size: 39
4609114 GGTTGGTGTG
4609124 GTGGAAGGCGGAGGTGTTGCTGTTGAAGGTGGTGGTGAA
1 GTGGAAGGCGGAGGTGTTGCTGTTGAAGGTGGTGGTGAA
* *
4609163 GTTGAAGGCGGAGGTGTTGCTGTCGAAGGTGGTGGTGAA
1 GTGGAAGGCGGAGGTGTTGCTGTTGAAGGTGGTGGTGAA
* * * * *
4609202 GTTGAAGGTGGAGGTGGTGTTGTTGAAGGTGGCGGTG
1 GTGGAAGGCGGAGGTGTTGCTGTTGAAGGTGGTGGTG
4609239 TGGTGGTTGG
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 69 1.00
ACGTcount: A:0.17, C:0.05, G:0.51, T:0.27
Consensus pattern (39 bp):
GTGGAAGGCGGAGGTGTTGCTGTTGAAGGTGGTGGTGAA
Found at i:4609217 original size:21 final size:21
Alignment explanation
Indices: 4609154--4609238 Score: 77
Period size: 21 Copynumber: 4.2 Consensus size: 21
4609144 TGTTGAAGGT
*
4609154 GGTGGTGAAGTTGAAGGCGGA
1 GGTGGTGAAGTTGAAGGTGGA
* ** *
4609175 GGTGTTGCTGTCGAAGGT---
1 GGTGGTGAAGTTGAAGGTGGA
4609193 GGTGGTGAAGTTGAAGGTGGA
1 GGTGGTGAAGTTGAAGGTGGA
** *
4609214 GGTGGTGTTGTTGAAGGTGGC
1 GGTGGTGAAGTTGAAGGTGGA
4609235 GGTG
1 GGTG
4609239 TGGTGGTTGG
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
18 14 0.29
21 35 0.71
ACGTcount: A:0.16, C:0.05, G:0.52, T:0.27
Consensus pattern (21 bp):
GGTGGTGAAGTTGAAGGTGGA
Found at i:4609238 original size:18 final size:18
Alignment explanation
Indices: 4609144--4609239 Score: 75
Period size: 18 Copynumber: 5.0 Consensus size: 18
4609134 GAGGTGTTGC
*
4609144 TGTTGAAGGTGGTGGTGA
1 TGTTGAAGGTGGTGGTGT
* * *
4609162 AGTTGAAGGCGGAGGTGT
1 TGTTGAAGGTGGTGGTGT
*
4609180 TGCTGTCGAAGGTGGTGGTGA
1 TG-T-T-GAAGGTGGTGGTGT
*
4609201 AGTTGAAGGTGGAGGTGGTGT
1 TGTTGAAGGT---GGTGGTGT
*
4609222 TGTTGAAGGTGGCGGTGT
1 TGTTGAAGGTGGTGGTGT
4609240 GGTGGTTGGC
Statistics
Matches: 60, Mismatches: 12, Indels: 12
0.71 0.14 0.14
Matches are distributed among these distances:
18 28 0.47
19 2 0.03
20 2 0.03
21 28 0.47
ACGTcount: A:0.17, C:0.04, G:0.50, T:0.29
Consensus pattern (18 bp):
TGTTGAAGGTGGTGGTGT
Found at i:4609247 original size:21 final size:21
Alignment explanation
Indices: 4609117--4609247 Score: 64
Period size: 21 Copynumber: 6.5 Consensus size: 21
4609107 CTGGTGCGGT
* *
4609117 TGGTGTGGTGGAAGGCGGAGG
1 TGGTGTGGTTGAAGGTGGAGG
*
4609138 TGTTGCT-GTTGAAGGT---GG
1 TGGTG-TGGTTGAAGGTGGAGG
** *
4609156 TGGTGAAGTTGAAGGCGGAGG
1 TGGTGTGGTTGAAGGTGGAGG
* *
4609177 TGTTGCT-GTCGAAGGT---GG
1 TGGTG-TGGTTGAAGGTGGAGG
**
4609195 TGGTGAAGTTGAAGGTGGAGG
1 TGGTGTGGTTGAAGGTGGAGG
* *
4609216 TGGTGTTGTTGAAGGTGGCGG
1 TGGTGTGGTTGAAGGTGGAGG
4609237 T-GTGGTGGTTG
1 TGGT-GTGGTTG
4609248 GCGTAGTGGA
Statistics
Matches: 82, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
18 28 0.34
20 2 0.02
21 51 0.62
22 1 0.01
ACGTcount: A:0.15, C:0.05, G:0.52, T:0.29
Consensus pattern (21 bp):
TGGTGTGGTTGAAGGTGGAGG
Found at i:4609461 original size:4 final size:4
Alignment explanation
Indices: 4609448--4609477 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
4609438 ATTTTGGAAG
4609448 TAAA -AAA TAAA TAAA TAAA TAAA TAAA TAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAA
4609478 TGTTTGGTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 22 0.88
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
TAAA
Found at i:4611245 original size:74 final size:74
Alignment explanation
Indices: 4611073--4611354 Score: 239
Period size: 74 Copynumber: 3.8 Consensus size: 74
4611063 TATTCGGGGG
* *
4611073 TTCGGGGTTC-GGTTCGGGG-TTC-GGGTTCGGGGTTGGGGTTTCGGGGTTC-GGTTCG-GGGTT
1 TTCGGGGTTCGGGTTCGGGGTTTCGGGGTTCGGGGTT-CGG-TTCGGGGTTCGGGTTCGAAGG-T
*
4611133 CGGGGTTCGGGG
63 CGGGGTTCGGGA
*
4611145 TGC-GGGTTCGGGTTTTTTC-GGG-TTCGGGGTTCGGGGTTCGGTTCGGGGTTCGGGTT-GAAGG
1 TTCGGGGTTCGGG----TTCGGGGTTTCGGGGTTCGGGGTTCGGTTCGGGGTTCGGGTTCGAAGG
*
4611206 T-GGTGTTTCGGGA
62 TCGG-GGTTCGGGA
*
4611219 TTCGGGGTTCGGGGTTCGGGGTTTCGGGGTTCGGGGTTCGGGGTTTCGGGGTTTCGGGGTTCGGG
1 TTCGGGGTTC-GGGTTCGGGGTTTCGGGGTTCGGGGTTC--GG-TTCGGGG-TTC-GGGTTC-GA
* *
4611284 AGTTCGGGGTTCGGGG
59 AGGTCGGGGTTCGGGA
* *
4611300 TTCGGGGTTCGGGTTCGGGGTTAC-GGGTTCGGGGAT--GTTCGGGGTTCGGGGTTCG
1 TTCGGGGTTCGGGTTCGGGGTTTCGGGGTTCGGGGTTCGGTTCGGGGTTC-GGGTTCG
4611355 GGGTTTCGGA
Statistics
Matches: 177, Mismatches: 12, Indels: 42
0.77 0.05 0.18
Matches are distributed among these distances:
71 6 0.03
72 8 0.05
73 15 0.08
74 45 0.25
75 21 0.12
76 20 0.11
77 7 0.04
78 3 0.02
79 16 0.09
80 13 0.07
81 21 0.12
82 2 0.01
ACGTcount: A:0.02, C:0.13, G:0.52, T:0.32
Consensus pattern (74 bp):
TTCGGGGTTCGGGTTCGGGGTTTCGGGGTTCGGGGTTCGGTTCGGGGTTCGGGTTCGAAGGTCGG
GGTTCGGGA
Found at i:4611476 original size:1 final size:1
Alignment explanation
Indices: 4611365--4611456 Score: 166
Period size: 1 Copynumber: 92.0 Consensus size: 1
4611355 GGGTTTCGGA
* *
4611365 GGGGGGGGGTGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
4611430 GGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGG
4611457 TTTCGGGGGG
Statistics
Matches: 87, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
1 87 1.00
ACGTcount: A:0.01, C:0.00, G:0.98, T:0.01
Consensus pattern (1 bp):
G
Found at i:4611620 original size:49 final size:47
Alignment explanation
Indices: 4611467--4611794 Score: 317
Period size: 48 Copynumber: 6.9 Consensus size: 47
4611457 TTTCGGGGGG
*
4611467 GGTTCGGGGGTCGGGGTTCGGGGTTCGGGGTATCGGGGTTCGGGTTGTCGG
1 GGTTC-GGGTTCGGGGTTCGGGGTTCGGGGT-TCGGGGTTCGGG-T-TCGG
4611518 GGTTCGGGGTTCGGGGTTCGGGGTTTCAGGGTGTTC-GGGTTCGGGTTCGG
1 GGTTC-GGGTTCGGGGTTCGGGG-TTC-GGG-GTTCGGGGTTCGGGTTCGG
* *
4611568 GGTTCGGGGTC-GTGTTCGGGGGTTCGGGGTTC-GGG-TC--GTTCGG
1 GGTTCGGGTTCGGGGTTC-GGGGTTCGGGGTTCGGGGTTCGGGTTCGG
4611611 GGTTCGGGTTCGGGGTTC--GGTTCGGGGTTCCGGGG-T---GTTCGGG
1 GGTTCGGGTTCGGGGTTCGGGGTTCGGGGTT-CGGGGTTCGGGTTC-GG
* *
4611654 GGTTCGGGTTC-GGGTTCGGGGTTCGGGTTTCGGGGTTCGGGGTTTAGG
1 GGTTCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGGTTC-GGG-TTCGG
* *
4611702 GGTTCGGGGTC-GGGTTCGGGGTTCGGGGTTTCGGGGTGCGGGGTTCGGG
1 GGTTCGGGTTCGGGGTTCGGGGTTCGGGG-TTCGGGGTTC-GGGTTC-GG
* *
4611751 GGTGTCGGGTTCGGGGTTCGGTGTTC-GGGTTCGGGGTTGGGGTT
1 GGT-TCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTT
4611795 GTAGGGTTTA
Statistics
Matches: 242, Mismatches: 15, Indels: 43
0.81 0.05 0.14
Matches are distributed among these distances:
41 11 0.05
42 11 0.05
43 38 0.16
44 16 0.07
45 2 0.01
46 7 0.03
47 3 0.01
48 44 0.18
49 37 0.15
50 19 0.08
51 35 0.14
52 12 0.05
53 5 0.02
54 2 0.01
ACGTcount: A:0.01, C:0.14, G:0.55, T:0.30
Consensus pattern (47 bp):
GGTTCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTTCGG
Found at i:4611622 original size:92 final size:91
Alignment explanation
Indices: 4611466--4611793 Score: 357
Period size: 92 Copynumber: 3.5 Consensus size: 91
4611456 GTTTCGGGGG
*
4611466 GGGTTCGGGGGTCGGGGTTCGGGGTTCGGGGTATCGGGGTTCGGGT-TGTCGGGGTTCGGGGTTC
1 GGGTTC-GGGTTCGGGGTTCGGGGTTCGGGGT-TCGGGGTTCGGGTGT-TCGGGGTTC-GGGTTC
4611530 GGGGTTCGGGGTTTCAGGGTGTTC-GGGTTC
62 GGGGTTCGGGGTTTC-GGGTGTTCGGGGTTC
*
4611560 GGGTTCGGGGTTCGGGG-TC-GTGTTCGGGGGTTCGGGGTTCGGGTCGTTCGGGGTTCGGGTTCG
1 GGGTTC-GGGTTCGGGGTTCGGGGTTC-GGGGTTCGGGGTTCGGGT-GTTCGGGGTTCGGGTTC-
*
4611623 GGGTTCGGTTCGGGGTTCCGGGGTGTTCGGGGGTTC
62 -GG---GGTTCGGGGTTTC-GGGTGTTC-GGGGTTC
* *
4611659 GGGTTCGGGTTCGGGGTTCGGGTTTCGGGGTTCGGGGTTTAGGG-GTTCGGGG-TCGGGTTCGGG
1 GGGTTCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGG-TTCGGGTGTTCGGGGTTCGGGTTCGGG
*
4611722 GTTCGGGGTTTCGGG-GTGCGGGGTTC
65 GTTCGGGGTTTCGGGTGTTCGGGGTTC
* *
4611748 GGGGGTGTCGGGTTCGGGGTTCGGTGTTC-GGGTTCGGGGTTGGGGT
1 --GGGT-TCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGT
4611794 TGTAGGGTTT
Statistics
Matches: 205, Mismatches: 12, Indels: 37
0.81 0.05 0.15
Matches are distributed among these distances:
89 7 0.03
90 8 0.04
91 17 0.08
92 56 0.27
93 16 0.08
94 19 0.09
95 2 0.01
97 28 0.14
98 18 0.09
99 25 0.12
100 9 0.04
ACGTcount: A:0.01, C:0.14, G:0.55, T:0.30
Consensus pattern (91 bp):
GGGTTCGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGGTTCGGGTGTTCGGGGTTCGGGTTCGGGG
TTCGGGGTTTCGGGTGTTCGGGGTTC
Found at i:4611795 original size:6 final size:7
Alignment explanation
Indices: 4611046--4611794 Score: 470
Period size: 7 Copynumber: 106.7 Consensus size: 7
4611036 TTTGGAGGCC
4611046 GGGTTCGG
1 GGGTTC-G
4611054 GGTGTTCG
1 GG-GTTCG
**
4611062 GTATTCGG
1 GGGTTC-G
4611070 GGGTTCG
1 GGGTTCG
4611077 GGGTTC-
1 GGGTTCG
4611083 -GGTTCG
1 GGGTTCG
4611089 GGGTTC-
1 GGGTTCG
4611095 GGGTTCG
1 GGGTTCG
4611102 GGGTT-G
1 GGGTTCG
4611108 GGGTTTCG
1 GGG-TTCG
4611116 GGGTTC-
1 GGGTTCG
4611122 -GGTTCG
1 GGGTTCG
4611128 GGGTTCG
1 GGGTTCG
4611135 GGGTTCG
1 GGGTTCG
*
4611142 GGGTGC-
1 GGGTTCG
4611148 GGGTTCG
1 GGGTTCG
*
4611155 GGTTTTTTC-
1 GG---GTTCG
4611164 GGGTTCG
1 GGGTTCG
4611171 GGGTTCG
1 GGGTTCG
4611178 GGGTTC-
1 GGGTTCG
4611184 -GGTTCG
1 GGGTTCG
4611190 GGGTTC-
1 GGGTTCG
4611196 GGGTT-G
1 GGGTTCG
*
4611202 AAGG-T-G
1 -GGGTTCG
*
4611208 GTGTTTCG
1 G-GGTTCG
*
4611216 GGATTCG
1 GGGTTCG
4611223 GGGTTCG
1 GGGTTCG
4611230 GGGTTCG
1 GGGTTCG
4611237 GGGTTTCG
1 GGG-TTCG
4611245 GGGTTCG
1 GGGTTCG
4611252 GGGTTCG
1 GGGTTCG
4611259 GGGTTTCG
1 GGG-TTCG
4611267 GGGTTTCG
1 GGG-TTCG
4611275 GGGTTCG
1 GGGTTCG
4611282 GGAGTTCG
1 GG-GTTCG
4611290 GGGTTCG
1 GGGTTCG
4611297 GGGTTCG
1 GGGTTCG
4611304 GGGTTC-
1 GGGTTCG
4611310 GGGTTCG
1 GGGTTCG
4611317 GGGTTAC-
1 GGGTT-CG
4611324 GGGTTCGG
1 GGGTTC-G
4611332 GGATGTTCG
1 GG--GTTCG
4611341 GGGTTCG
1 GGGTTCG
4611348 GGGTTCG
1 GGGTTCG
4611355 GGGTTTCG
1 GGG-TTCG
**
4611363 GAGG-GGG
1 G-GGTTCG
*
4611370 GGGGT-G
1 GGGTTCG
***
4611376 GAGGGGGG
1 G-GGTTCG
***
4611384 GGGGGGG
1 GGGTTCG
***
4611391 GGGGGGG
1 GGGTTCG
***
4611398 GGGGGGG
1 GGGTTCG
***
4611405 GGGGGGG
1 GGGTTCG
***
4611412 GGGGGGG
1 GGGTTCG
***
4611419 GGGGGGG
1 GGGTTCG
***
4611426 GGGGGGG
1 GGGTTCG
***
4611433 GGGGGGG
1 GGGTTCG
***
4611440 GGGGGGG
1 GGGTTCG
***
4611447 GGGGGGG
1 GGGTTCG
4611454 GGGTTTCG
1 GGG-TTCG
4611462 GGG---G
1 GGGTTCG
4611466 GGGTTCG
1 GGGTTCG
*
4611473 GGGGTCG
1 GGGTTCG
4611480 GGGTTCG
1 GGGTTCG
4611487 GGGTTCG
1 GGGTTCG
4611494 GGGTATCG
1 GGGT-TCG
4611502 GGGTTCG
1 GGGTTCG
*
4611509 GGTTGTCG
1 GGGT-TCG
4611517 GGGTTCG
1 GGGTTCG
4611524 GGGTTCG
1 GGGTTCG
4611531 GGGTTCG
1 GGGTTCG
4611538 GGGTTTCAG
1 GGG-TTC-G
4611547 GGTGTTC-
1 GG-GTTCG
4611554 GGGTTC-
1 GGGTTCG
4611560 GGGTTCG
1 GGGTTCG
4611567 GGGTTCG
1 GGGTTCG
4611574 GGG-TC-
1 GGGTTCG
*
4611579 GTGTTCGG
1 GGGTTC-G
4611587 GGGTTCG
1 GGGTTCG
4611594 GGGTTCG
1 GGGTTCG
4611601 GGTCGTTCG
1 GG--GTTCG
4611610 GGGTTC-
1 GGGTTCG
4611616 GGGTTCG
1 GGGTTCG
4611623 GGGTTC-
1 GGGTTCG
4611629 -GGTTCG
1 GGGTTCG
4611635 GGGTTCCGG
1 GGGTT-C-G
4611644 GGTGTTCGG
1 GG-GTTC-G
4611653 GGGTTC-
1 GGGTTCG
4611659 GGGTTC-
1 GGGTTCG
4611665 GGGTTCG
1 GGGTTCG
4611672 GGGTTCG
1 GGGTTCG
*
4611679 GGTTTCG
1 GGGTTCG
4611686 GGGTTCG
1 GGGTTCG
*
4611693 GGGTTTAG
1 GGG-TTCG
4611701 GGGTTCG
1 GGGTTCG
4611708 GGG-TC-
1 GGGTTCG
4611713 GGGTTCG
1 GGGTTCG
4611720 GGGTTCG
1 GGGTTCG
4611727 GGGTTTCG
1 GGG-TTCG
*
4611735 GGGTGCG
1 GGGTTCG
4611742 GGGTTCGG
1 GGGTTC-G
4611750 GGGTGTC-
1 GGGT-TCG
4611757 GGGTTCG
1 GGGTTCG
4611764 GGGTTCG
1 GGGTTCG
*
4611771 GTGTTC-
1 GGGTTCG
4611777 GGGTTCG
1 GGGTTCG
4611784 GGGTT-G
1 GGGTTCG
4611790 GGGTT
1 GGGTT
4611795 GTAGGGTTTA
Statistics
Matches: 642, Mismatches: 34, Indels: 132
0.79 0.04 0.16
Matches are distributed among these distances:
4 4 0.01
5 25 0.04
6 86 0.13
7 380 0.59
8 102 0.16
9 34 0.05
10 11 0.02
ACGTcount: A:0.02, C:0.12, G:0.59, T:0.28
Consensus pattern (7 bp):
GGGTTCG
Found at i:4612128 original size:121 final size:118
Alignment explanation
Indices: 4611790--4613010 Score: 765
Period size: 121 Copynumber: 10.2 Consensus size: 118
4611780 TTCGGGGTTG
*
4611790 GGGTTGTAGGGTTTAGGTTTAAGGGTTTAGGGTTTAGGG-TT-GGGTTTAGGGTTTTAGAGGGTT
1 GGGTT-TAGGGTTTAGGTTT-AGGGTTTAGGGTTTAGGGTTTAGGG-TTAGGG-TTTA-TGGGTT
*
4611853 TAGGGTTTAGGGGTTAAGGGTTT-GGGTTTAAGGG-TTA-GGGTTAGGGTTTAGGGTTTA
61 TAGGGTTTA-GGGTTTAGGGTTTAGGGTTT-AGGGTTTAGGGGTTAGGGTTTAGGGTTTA
* *
4611910 GGGTTTAGGGGTTTTGGGGTTTAGGGTGTAGGGTTTA--GTTTAGGGTTTAGGGTTTA-GGGTTT
1 GGGTTTA-GGG-TTT-AGGTTTAGGGTTTAGGGTTTAGGGTTTAGGG-TTAGGGTTTATGGGTTT
4611972 AAGGGTTTAGGGTTTTA-GGTTTAGGGTTTAGGGGTTTAGGGGTTAAGGGTTTAGGGTTTA
62 -AGGGTTTAGGG-TTTAGGGTTTAGGGTTTA-GGGTTTAGGGGTT-AGGGTTTAGGGTTTA
*
4612032 GGGTTTAGGGTTTAGG-TTAGGGTTGTAGGGTTTAGGGTTTAGGGTTAGGGATTTATGGTTTTAG
1 GGGTTTAGGGTTTAGGTTTAGGGTT-TAGGGTTTAGGGTTTAGGGTTAGGG-TTTATGGGTTTAG
*
4612096 GGTTTAGGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAAGGGTTTAGGGTTTA
64 GGTTTA-GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTT-AGGGTTTAGGGTTTA
4612153 GGGTTTTAAAGGGTTTA----TAGGGTTTAGGGTTTAGGGTTTTAGGGTTAGGGTTTA-GATGGT
1 GGG-TTT--AGGGTTTAGGTTTAGGGTTTAGGGTTTAGGG-TTTAGGGTTAGGGTTTATG--GGT
*
4612213 TTA-GGTTTAGGGTTTAGGGTTTACGGGTTTAGGGTTTAGAGG-T---GTTTA-GGTTTA
60 TTAGGGTTTAGGGTTTAGGGTTTA-GGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTTTA
* * * * *
4612267 GGGTATTTGAGGGTTTCGGTTTAGGGTTTCGGGTTTAGGGTTTA-GTTTCGGGTTT-CGGGTTTA
1 GGG--TTT-AGGGTTTAGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTAGGGTTTATGGGTTTA
*
4612330 GGGTTTA-GGTTTAGGGTTTAGGGTTTAGGG-TTAGGGGTT-CGG-TTAGGGTTGTA
63 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTT-TA
* *
4612383 GGGTTT-GGGTTTAGGGTATTAGGGTTTA-GGTTTA-GG-TTAGGTTTAGGGTTT-TAGGGGTTA
1 GGGTTTAGGGTTTA-GGT-TTAGGGTTTAGGGTTTAGGGTTTAGGGTTAGGGTTTAT-GGGTTTA
* * *
4612443 GTGTTTAGGGTTTAGGGTTTAGGGTTTTCGGGTTT-GGGGTTATGGTTTTAGGGTTCTGA
63 GGGTTTAGGGTTTAGGGTTTAGGG-TTTAGGGTTTAGGGGTTA-GGGTTTAGGGTT-T-A
* * *
4612502 GGGTTTCGAGAGGTTTACGGGTTTAAGGTATTACGGGTGTTA-GGTTTCGGGTTTCGGGTTT-TC
1 GGGTTT--AG-GGTTTA--GGTTTAGGGT-TTA-GGGT-TTAGGGTTTAGGG-TTAGGGTTTAT-
* * * * * * * ** *
4612565 GTGTTTCGGGTTTCGGGTTTAGGGTTTCGGGTTTCGGGTTTCGGGTTTCTGGTTT-CGGTTTA
56 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTTTA
** * * * * *
4612627 -GGTTTTCGGTTTCGGTTTCGGGTTTCGGGTTTTCGGGTTTCGGGTT-GGGTTTAGGTCGGG-TT
1 GGGTTTAGGGTTTAGGTTTAGGGTTTAGGG-TTTAGGGTTTAGGGTTAGGGTTTA--T-GGGTTT
* * * * ** * * *
4612689 -GGGTTTCGGGTTTTTGCGGGTTTCGGGTTTCGGGTTTCTGGGTTCGGGTTTCGGGTTTC
62 AGGGTTTAGGG--TTT-AGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTTTA
* * * * * * * * *
4612748 GGGTTTCGGGTTCTCGGGTTTTCGGGGTTTCGGGTTT-CGGTTTCGGTTTCGGGTTT-CGGGTTT
1 GGGTTTAGGGTT-T-AGG-TTT-AGGGTTTAGGGTTTAGGGTTTAGGGTTAGGGTTTATGGGTTT
* * * * * * * * * *
4612811 CGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTCGGGTTTTCGGGTTTC
62 AGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGG-TTTAGGGTTTA
* * * * * * * * *
4612869 GGGTTTCGGGTTTCGGGTTTTCGGGTTTCGGG-TT-CGGTTTCGGGTTTCGGGTTT-CGGG-TTC
1 GGGTTTAGGGTTT-AGG-TTTAGGGTTTAGGGTTTAGGGTTTAGGG-TTAGGGTTTATGGGTTTA
* * * * * * * *
4612930 GGGTTT-CGGTTTCGGGTTTCGGGTTTCGGGTTT-CGGTTTAGGGTTTCGGGTTTC
63 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTTTA
* * *
4612984 GGGTTTCGGGTTTCGGGTTTCGGGTTT
1 GGGTTTAGGGTTT-AGGTTTAGGGTTT
4613011 CGGGAGTTTT
Statistics
Matches: 950, Mismatches: 71, Indels: 166
0.80 0.06 0.14
Matches are distributed among these distances:
111 3 0.00
112 24 0.03
113 32 0.03
114 76 0.08
115 59 0.06
116 31 0.03
117 48 0.05
118 83 0.09
119 95 0.10
120 134 0.14
121 154 0.16
122 63 0.07
123 23 0.02
124 32 0.03
125 13 0.01
126 14 0.01
127 9 0.01
128 18 0.02
129 39 0.04
ACGTcount: A:0.10, C:0.06, G:0.42, T:0.43
Consensus pattern (118 bp):
GGGTTTAGGGTTTAGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTAGGGTTTATGGGTTTAGGG
TTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGGTTAGGGTTTAGGGTTTA
Found at i:4612302 original size:53 final size:52
Alignment explanation
Indices: 4611799--4612468 Score: 537
Period size: 53 Copynumber: 12.5 Consensus size: 52
4611789 GGGGTTGTAG
*
4611799 GGTTTA-GGTTTAAGGGTTTAGGGTTTAGGGTTGGGTTTAGGGTTTTAGAGGGTTTA
1 GGTTTAGGGTTT-AGGGTTTAGGG-TTA-GGTTAGGTTTAGGGTTTT--AGGGTTTA
* *
4611855 GGGTTTAGGGGTTAAGGGTTT-GGGTTTAAGGGTTAGGGTTAGGG-TTTAGGGTTTA
1 -GGTTTA-GGGTTTAGGGTTTAGGG-TT-A-GGTTAGGTTTAGGGTTTTAGGGTTTA
*
4611910 GGGTTTAGGGGTTTTGGGGTTTAGGGTGTAGGGTTTA-GTTTAGGG-TTTAGGGTTTA
1 -GGTTTA-GGG-TTTAGGGTTTAGGGT-TA-GG-TTAGGTTTAGGGTTTTAGGGTTTA
* * *
4611966 GGGTTTAAGGGTTTAGGGTTTTAGGTTTA-G---GGTTTAGGGGTTTAGGGGTTAA
1 -GGTTT-AGGGTTTAGGG-TTTAGGGTTAGGTTAGGTTTAGGGTTTTA-GGGTTTA
4612018 GGGTTTAGGGTTTAGGGTTTAGGGTTTAGGTTAGGGTTGTAGGG-TTTAGGGTTTA
1 -GGTTTAGGGTTTAGGGTTTAGGG-TTAGGTTA-GGTT-TAGGGTTTTAGGGTTTA
* *
4612073 GGGTTAGGGATTTATGGTTTTAGGGTTTAGG---GGTTTAGGG-TTTAGGGTTTA
1 GGTTTAGGG-TTTA-GGGTTTAGGG-TTAGGTTAGGTTTAGGGTTTTAGGGTTTA
*
4612124 GGGTTTAGGGTTTAAGGGTTTAGGGTTTAGGGTT---TTAAAGGGTTTATAGGGTTTA
1 -GGTTTAGGGTTT-AGGGTTTAGGG-TTA-GGTTAGGTT-TAGGGTTT-TAGGGTTTA
*
4612179 GGGTTTAGGGTTTTAGGG-TTAGGGTTTA-GAT-GGTTTA-GG-TTTAGGGTTTA
1 -GGTTTAGGG-TTTAGGGTTTAGGG-TTAGGTTAGGTTTAGGGTTTTAGGGTTTA
* *
4612229 GGGTTTACGGGTTTAGGGTTTAGAGG-T-GTTTAGGTTTAGGGTATTTGAGGGTTTC
1 -GGTTTA-GGGTTTAGGGTTTAG-GGTTAGGTTAGGTTTAGGGT-TTT-AGGGTTTA
* * * *
4612284 GGTTTAGGGTTTCGGGTTTAGGGTTTAGTTTCGGGTTTCGGG-TTTAGGGTTTA
1 GGTTTAGGGTTTAGGGTTTAGGG-TTAGGTT-AGGTTTAGGGTTTTAGGGTTTA
* * *
4612337 GGTTTAGGGTTTAGGGTTTAGGGTTAGGGGTTCGG-TTAGGGTTGTAGGGTTTG
1 GGTTTAGGGTTTAGGGTTTAGGGTTA--GGTTAGGTTTAGGGTTTTAGGGTTTA
* *
4612390 GGTTTAGGGTATTAGGGTTTAGGTTTAGGTTAGGTTTAGGGTTTTAGGGGTTA
1 GGTTTAGGGT-TTAGGGTTTAGGGTTAGGTTAGGTTTAGGGTTTTAGGGTTTA
4612443 GTGTTTAGGGTTTAGGGTTTAGGGTT
1 G-GTTTAGGGTTTAGGGTTTAGGGTT
4612469 TTCGGGTTTG
Statistics
Matches: 525, Mismatches: 37, Indels: 106
0.79 0.06 0.16
Matches are distributed among these distances:
50 39 0.07
51 65 0.12
52 54 0.10
53 100 0.19
54 62 0.12
55 71 0.14
56 81 0.15
57 28 0.05
58 21 0.04
59 4 0.01
ACGTcount: A:0.15, C:0.01, G:0.42, T:0.42
Consensus pattern (52 bp):
GGTTTAGGGTTTAGGGTTTAGGGTTAGGTTAGGTTTAGGGTTTTAGGGTTTA
Found at i:4614408 original size:46 final size:45
Alignment explanation
Indices: 4614358--4615088 Score: 172
Period size: 46 Copynumber: 16.2 Consensus size: 45
4614348 GTTAGGAGAT
4614358 TTTCGGGTTTCCCGAG-TTTCGGTTTCGGGTTT-CGGAGTTTCCGGAG
1 TTTCGGGTTT-CCGAGTTTTCGGTTTCGGGTTTCCGG-GTTTCCGG-G
* * *
4614404 TTTCGGGTTTCGGGGTTTTCGGTTTCGGGTTTCCGGGTTTTCGGG
1 TTTCGGGTTTCCGAGTTTTCGGTTTCGGGTTTCCGGGTTTCCGGG
*
4614449 TTTCGGGTTAT-C-AG-----GGTTTCGAGGTTATTCGGGGTTTTCCGGGTG
1 TTTCGGGTT-TCCGAGTTTTCGGTTTCG-GG-T-TTCCGGG-TTTCC-GG-G
* * * *
4614494 TTATCGGGTTTCGGAGTTTCCGGGATTTCGGGTTATCAGGCTTT-CGGG
1 TT-TCGGGTTTCCGAGTTTTC-GG-TTTCGGGTT-TCCGGGTTTCCGGG
* * *
4614542 GTTCGGGTTATGCGGGTATTTCCCGGGTTTCGAGGTTAT-CGGGTTAT-CGGAG
1 TTTCGGGTT-TCCGAGT-TTT--C-GGTTTCG-GGTT-TCCGGGTT-TCCGG-G
* *
4614594 TTTCGGG-TT-CG-GGTTTCGGAGTTTCGGGTTTTCGCGGTTT-CGGG
1 TTTCGGGTTTCCGAGTTTTC-G-GTTTCGGGTTTCCG-GGTTTCCGGG
* * *
4614638 TTTTC-GGTATT-CG-G-GTTCGGGTTTCGGGTTTACGGGTTTGTCGGG
1 -TTTCGGGT-TTCCGAGTTTTC-GGTTTCGGGTTTCCGGGTTT-CCGGG
* *
4614683 TGTTCGGGTTTCAACGAAGGTTTCGAAGGTTTCAGGGTTTCAGGGTTT-CGTAGG
1 T-TTCGGGTTTC--CG-AGTTTTC---GGTTTC-GGGTTTCCGGGTTTCCG--GG
*
4614737 TTTCGGAGTTT-CG-G-TTTCAGGGTTC-GGTTT-CGGGTTT--GGG
1 TTTCGG-GTTTCCGAGTTTTC-GGTTTCGGGTTTCCGGGTTTCCGGG
* ** * * *
4614777 TATTCGGGTTT-CGGGTTTAGGGTTTC-GGTTTCGGGGTAT-CGAG
1 T-TTCGGGTTTCCGAGTTTTCGGTTTCGGGTTTCCGGGTTTCCGGG
* * *
4614820 TTTCGGGTTT-CGGGTATTTTCGGGGTTCGGGTTTCGGGGTTT-CGGG
1 TTTCGGGTTTCCGAG--TTTTC-GGTTTCGGGTTTCCGGGTTTCCGGG
* * *
4614866 TTTTC-GGTTT-CG-GGTTGCGGGTTTCGGGTTT-C-GGTTTTC-GG
1 -TTTCGGGTTTCCGAGTTTTC-GGTTTCGGGTTTCCGGGTTTCCGGG
* *
4614907 TGTCGAGGTTT-CGAGGTTTCCGGGTTTCGGGTTT--GGG-TT-C-GG
1 TTTCG-GGTTTCCGA-GTTTTC-GGTTTCGGGTTTCCGGGTTTCCGGG
* * *
4614949 TTTCGGGTAT-CG-G-GTTCGGTTTCGGGTTTTCGGGTTT-CGAGG
1 TTTCGGGTTTCCGAGTTTTCGGTTTCGGGTTTCCGGGTTTCCG-GG
* *
4614991 TTTCGGATTT-CG-GGTTTCGGGTTTCGGGTTT-CGGAGTTT-CGGG
1 TTTCGGGTTTCCGAGTTTTC-GGTTTCGGGTTTCCGG-GTTTCCGGG
* * *
4615034 TGTACAGGGTTT-CG-GGTTTCGGGTGTCGGGTTT-CGGGTTT-CGGG
1 T-TTC-GGGTTTCCGAGTTTTC-GGTTTCGGGTTTCCGGGTTTCCGGG
*
4615078 TATCGGGTTTC
1 TTTCGGGTTTC
4615089 GGGTTTAACA
Statistics
Matches: 552, Mismatches: 57, Indels: 155
0.72 0.07 0.20
Matches are distributed among these distances:
37 12 0.02
38 2 0.00
39 11 0.02
40 17 0.03
41 30 0.05
42 61 0.11
43 45 0.08
44 77 0.14
45 82 0.15
46 87 0.16
47 19 0.03
48 13 0.02
49 7 0.01
50 12 0.02
51 24 0.04
52 14 0.03
53 15 0.03
54 24 0.04
ACGTcount: A:0.06, C:0.15, G:0.39, T:0.40
Consensus pattern (45 bp):
TTTCGGGTTTCCGAGTTTTCGGTTTCGGGTTTCCGGGTTTCCGGG
Found at i:4614737 original size:25 final size:25
Alignment explanation
Indices: 4614701--4614748 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
4614691 TTTCAACGAA
4614701 GGTTTCGAAGGTTTCAGG-GTTTCAG
1 GGTTTCGAAGGTTTC-GGAGTTTCAG
*
4614726 GGTTTCGTAGGTTTCGGAGTTTC
1 GGTTTCGAAGGTTTCGGAGTTTC
4614749 GGTTTCAGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 2 0.10
25 19 0.90
ACGTcount: A:0.12, C:0.12, G:0.35, T:0.40
Consensus pattern (25 bp):
GGTTTCGAAGGTTTCGGAGTTTCAG
Found at i:4615357 original size:17 final size:15
Alignment explanation
Indices: 4615299--4615485 Score: 101
Period size: 15 Copynumber: 12.5 Consensus size: 15
4615289 TTTTTCAGGG
4615299 TTTCGGGT-TCGGG-
1 TTTCGGGTATCGGGT
*
4615312 -TTCGGGGT-TCCGGT
1 TTTC-GGGTATCGGGT
*
4615326 TTTCGGGTTTCGGGT
1 TTTCGGGTATCGGGT
4615341 TATTCGAGGTATCGGGT
1 T-TTCG-GGTATCGGGT
*
4615358 TTTAGGGT-TCGGGTT
1 TTTCGGGTATCGGG-T
*
4615373 TTTCGGGTTTCGGAG-
1 TTTCGGGTATCGG-GT
*
4615388 TTTCGGGTTTCGGGT
1 TTTCGGGTATCGGGT
**
4615403 TTTCGGGTCGCAGGG-
1 TTTCGGGTATC-GGGT
*
4615418 TTTCGGGTTTTCGGG-
1 TTTCGGG-TATCGGGT
*
4615433 TTTCGAGGTTTTCGGG-
1 TTTCG-GG-TATCGGGT
4615449 TTTCGGGTATTC-GG-
1 TTTCGGGTA-TCGGGT
*
4615463 TTTCGCGGTTTCGGG-
1 TTTCG-GGTATCGGGT
4615478 TTTCGGGT
1 TTTCGGGT
4615486 GTGACACACA
Statistics
Matches: 147, Mismatches: 11, Indels: 31
0.78 0.06 0.16
Matches are distributed among these distances:
12 3 0.02
13 8 0.05
14 23 0.16
15 71 0.48
16 31 0.21
17 11 0.07
ACGTcount: A:0.04, C:0.14, G:0.40, T:0.41
Consensus pattern (15 bp):
TTTCGGGTATCGGGT
Found at i:4615877 original size:17 final size:17
Alignment explanation
Indices: 4615857--4615896 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
4615847 GTGTGGAGGC
*
4615857 TTTGGGGTATT-GAGGGG
1 TTTGGGGGATTCG-GGGG
4615874 TTTGGGGGATTCGGGGG
1 TTTGGGGGATTCGGGGG
4615891 TTTGGG
1 TTTGGG
4615897 AGTCTTGGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 20 0.95
18 1 0.05
ACGTcount: A:0.07, C:0.03, G:0.55, T:0.35
Consensus pattern (17 bp):
TTTGGGGGATTCGGGGG
Found at i:4615908 original size:32 final size:32
Alignment explanation
Indices: 4615871--4615951 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 32
4615861 GGGTATTGAG
*
4615871 GGGTTTGGGGGATTCGGGGGTTT-GGGAGTCTT
1 GGGTTTGGGGG-TTCGGGGGTTTCGGGAGTATT
* **
4615903 GGGTTTTGGGGTTTTGGGGTTTCGGGAGTATT
1 GGGTTTGGGGGTTCGGGGGTTTCGGGAGTATT
* *
4615935 CGG-TTGGGGGTTTGGGG
1 GGGTTTGGGGGTTCGGGG
4615952 TTGCGGGTAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
31 21 0.51
32 20 0.49
ACGTcount: A:0.05, C:0.05, G:0.53, T:0.37
Consensus pattern (32 bp):
GGGTTTGGGGGTTCGGGGGTTTCGGGAGTATT
Found at i:4616043 original size:17 final size:18
Alignment explanation
Indices: 4616021--4616054 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
4616011 TGGGGGGTTG
4616021 GGGTTTT-GGGGTTTTGA
1 GGGTTTTGGGGGTTTTGA
4616038 GGGTTTTGGGGGTTTTG
1 GGGTTTTGGGGGTTTTG
4616055 GGTTTGGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.03, C:0.00, G:0.50, T:0.47
Consensus pattern (18 bp):
GGGTTTTGGGGGTTTTGA
Found at i:4616414 original size:6 final size:7
Alignment explanation
Indices: 4611477--4619215 Score: 4274
Period size: 7 Copynumber: 1034.3 Consensus size: 7
4611467 GGTTCGGGGG
*
4611477 TCGGGGT
1 TCGGGTT
*
4611484 TCGGGGT
1 TCGGGTT
*
4611491 TCGGGGTA
1 TC-GGGTT
*
4611499 TCGGGGT
1 TCGGGTT
4611506 TCGGGTT
1 TCGGGTT
*
4611513 GTCGGGGT
1 -TCGGGTT
*
4611521 TCGGGGT
1 TCGGGTT
*
4611528 TCGGGGT
1 TCGGGTT
4611535 TCGGGGTT
1 TC-GGGTT
4611543 TCAGGGTGT
1 TC-GGGT-T
4611552 TCGGG-T
1 TCGGGTT
4611558 TCGGG-T
1 TCGGGTT
*
4611564 TCGGGGT
1 TCGGGTT
*
4611571 TCGGG-G
1 TCGGGTT
*
4611577 TCGTG-T
1 TCGGGTT
*
4611583 TCGGGGGT
1 TC-GGGTT
*
4611591 TCGGGGT
1 TCGGGTT
4611598 TCGGGTCGT
1 TCGGGT--T
*
4611607 TCGGGGT
1 TCGGGTT
4611614 TCGGG-T
1 TCGGGTT
*
4611620 TCGGGGT
1 TCGGGTT
4611627 TC-GG-T
1 TCGGGTT
4611632 TCGGGGTT
1 TC-GGGTT
*
4611640 CCGGGGTGT
1 TC-GGGT-T
*
4611649 TCGGGGGT
1 TC-GGGTT
4611657 TCGGG-T
1 TCGGGTT
4611663 TCGGG-T
1 TCGGGTT
*
4611669 TCGGGGT
1 TCGGGTT
4611676 TCGGGTT
1 TCGGGTT
*
4611683 TCGGGGT
1 TCGGGTT
4611690 TCGGGGTT
1 TC-GGGTT
* *
4611698 TAGGGGT
1 TCGGGTT
*
4611705 TCGGG-G
1 TCGGGTT
4611711 TCGGG-T
1 TCGGGTT
*
4611717 TCGGGGT
1 TCGGGTT
4611724 TCGGGGTT
1 TC-GGGTT
*
4611732 TCGGGGT
1 TCGGGTT
* *
4611739 GCGGGGT
1 TCGGGTT
*
4611746 TCGGGGGTG
1 TC--GGGTT
4611755 TCGGG-T
1 TCGGGTT
*
4611761 TCGGGGT
1 TCGGGTT
4611768 TC-GGTGT
1 TCGGGT-T
4611775 TCGGG-T
1 TCGGGTT
*
4611781 TCGGGGT
1 TCGGGTT
*
4611788 TGGGGTT
1 TCGGGTT
*
4611795 GTAGGGTT
1 -TCGGGTT
*
4611803 T-AGGTT
1 TCGGGTT
*
4611809 TAAGGGTT
1 T-CGGGTT
*
4611817 TAGGGTT
1 TCGGGTT
*
4611824 TAGGG-T
1 TCGGGTT
4611830 T-GGGTT
1 TCGGGTT
*
4611836 TAGGGTTT
1 TCGGG-TT
*
4611844 TAGAGGGTT
1 T--CGGGTT
*
4611853 TAGGGTT
1 TCGGGTT
*
4611860 TAGGGGTT
1 T-CGGGTT
**
4611868 AAGGGTT
1 TCGGGTT
4611875 T-GGGTT
1 TCGGGTT
*
4611881 TAAGGG-T
1 T-CGGGTT
*
4611888 TAGGG-T
1 TCGGGTT
*
4611894 TAGGGTT
1 TCGGGTT
*
4611901 TAGGGTT
1 TCGGGTT
*
4611908 TAGGGTT
1 TCGGGTT
*
4611915 TAGGGGTTT
1 T-CGGG-TT
*
4611924 TGGGGTT
1 TCGGGTT
* *
4611931 TAGGGTG
1 TCGGGTT
*
4611938 TAGGGTT
1 TCGGGTT
*
4611945 T--AGTT
1 TCGGGTT
*
4611950 TAGGGTT
1 TCGGGTT
*
4611957 TAGGGTT
1 TCGGGTT
*
4611964 TAGGGTT
1 TCGGGTT
*
4611971 TAAGGGTT
1 T-CGGGTT
*
4611979 TAGGGTT
1 TCGGGTT
**
4611986 TTAGGTT
1 TCGGGTT
*
4611993 TAGGGTT
1 TCGGGTT
*
4612000 TAGGGGTT
1 T-CGGGTT
*
4612008 TAGGGGTT
1 T-CGGGTT
**
4612016 AAGGGTT
1 TCGGGTT
*
4612023 TAGGGTT
1 TCGGGTT
*
4612030 TAGGGTT
1 TCGGGTT
*
4612037 TAGGGTT
1 TCGGGTT
*
4612044 T-AGG-T
1 TCGGGTT
*
4612049 TAGGGTT
1 TCGGGTT
*
4612056 GTAGGGTT
1 -TCGGGTT
*
4612064 TAGGGTT
1 TCGGGTT
*
4612071 TAGGG-T
1 TCGGGTT
*
4612077 TAGGGATT
1 TCGGG-TT
* *
4612085 TATGGTTT
1 T-CGGGTT
*
4612093 TAGGGTT
1 TCGGGTT
*
4612100 TAGGGGTT
1 T-CGGGTT
*
4612108 TAGGGTT
1 TCGGGTT
*
4612115 TAGGGTT
1 TCGGGTT
*
4612122 TAGGGTT
1 TCGGGTT
*
4612129 TAGGGTT
1 TCGGGTT
*
4612136 TAAGGGTT
1 T-CGGGTT
*
4612144 TAGGGTT
1 TCGGGTT
*
4612151 TAGGGTTT
1 TCGGG-TT
*
4612159 TAAAGGGTTT
1 T--CGGG-TT
*
4612169 ATAGGGTT
1 -TCGGGTT
*
4612177 TAGGGTT
1 TCGGGTT
*
4612184 TAGGGTTT
1 TCGGG-TT
*
4612192 TAGGG-T
1 TCGGGTT
*
4612198 TAGGGTT
1 TCGGGTT
*
4612205 TAGATGGTT
1 TCG--GGTT
*
4612214 T-AGGTT
1 TCGGGTT
*
4612220 TAGGGTT
1 TCGGGTT
*
4612227 TAGGGTT
1 TCGGGTT
4612234 TACGGGTT
1 T-CGGGTT
*
4612242 TAGGGTT
1 TCGGGTT
*
4612249 TAGAGGTGT
1 TCG-GGT-T
**
4612258 TTAGGTT
1 TCGGGTT
*
4612265 TAGGGTATT
1 TCGGG--TT
*
4612274 TGAGGGTT
1 T-CGGGTT
4612282 TC-GGTT
1 TCGGGTT
*
4612288 TAGGGTT
1 TCGGGTT
4612295 TCGGGTT
1 TCGGGTT
*
4612302 TAGGGTT
1 TCGGGTT
*
4612309 T--AGTT
1 TCGGGTT
4612314 TCGGGTT
1 TCGGGTT
4612321 TCGGGTT
1 TCGGGTT
*
4612328 TAGGGTT
1 TCGGGTT
*
4612335 T-AGGTT
1 TCGGGTT
*
4612341 TAGGGTT
1 TCGGGTT
*
4612348 TAGGGTT
1 TCGGGTT
*
4612355 TAGGG-T
1 TCGGGTT
* *
4612361 TAGGGGT
1 TCGGGTT
4612368 TC-GG-T
1 TCGGGTT
*
4612373 TAGGGTT
1 TCGGGTT
*
4612380 GTAGGGTT
1 -TCGGGTT
4612388 T-GGGTT
1 TCGGGTT
*
4612394 TAGGGTAT
1 TCGGGT-T
*
4612402 TAGGGTT
1 TCGGGTT
*
4612409 T-AGGTT
1 TCGGGTT
*
4612415 T-AGG-T
1 TCGGGTT
*
4612420 T-AGGTT
1 TCGGGTT
*
4612426 TAGGGTTT
1 TCGGG-TT
* *
4612434 TAGGGGT
1 TCGGGTT
* *
4612441 TAGTGTT
1 TCGGGTT
*
4612448 TAGGGTT
1 TCGGGTT
*
4612455 TAGGGTT
1 TCGGGTT
*
4612462 TAGGGTTT
1 TCGGG-TT
4612470 TCGGGTT
1 TCGGGTT
*
4612477 TGGGGTT
1 TCGGGTT
*
4612484 AT-GGTTT
1 -TCGGGTT
*
4612491 TAGGGTT
1 TCGGGTT
*
4612498 CTGAGGGTT
1 -T-CGGGTT
4612507 TCGAGAGGTT
1 TC--G-GGTT
4612517 TACGGGTT
1 T-CGGGTT
**
4612525 TAAGGTAT
1 TCGGGT-T
4612533 TACGGGTGT
1 T-CGGGT-T
*
4612542 T-AGGTT
1 TCGGGTT
4612548 TCGGGTT
1 TCGGGTT
4612555 TCGGGTTT
1 TCGGG-TT
*
4612563 TCGTGTT
1 TCGGGTT
4612570 TCGGGTT
1 TCGGGTT
4612577 TCGGGTT
1 TCGGGTT
*
4612584 TAGGGTT
1 TCGGGTT
4612591 TCGGGTT
1 TCGGGTT
4612598 TCGGGTT
1 TCGGGTT
4612605 TCGGGTT
1 TCGGGTT
*
4612612 TCTGGTT
1 TCGGGTT
4612619 TC-GGTT
1 TCGGGTT
* *
4612625 TAGGTTT
1 TCGGGTT
4612632 TC-GGTT
1 TCGGGTT
4612638 TC-GGTT
1 TCGGGTT
4612644 TCGGGTT
1 TCGGGTT
4612651 TCGGGTTT
1 TCGGG-TT
4612659 TCGGGTT
1 TCGGGTT
4612666 TCGGG-T
1 TCGGGTT
4612672 T-GGGTT
1 TCGGGTT
*
4612678 T-AGG--
1 TCGGGTT
4612682 TCGGG-T
1 TCGGGTT
4612688 T-GGGTT
1 TCGGGTT
4612694 TCGGGTTTT
1 TCGGG--TT
4612703 TGCGGGTT
1 T-CGGGTT
4612711 TCGGGTT
1 TCGGGTT
4612718 TCGGGTT
1 TCGGGTT
4612725 TCTGGG-T
1 TC-GGGTT
4612732 TCGGGTT
1 TCGGGTT
4612739 TCGGGTT
1 TCGGGTT
4612746 TCGGGTT
1 TCGGGTT
4612753 TCGGGTT
1 TCGGGTT
4612760 CTCGGGTTT
1 -TCGGG-TT
4612769 TCGGGGTT
1 TC-GGGTT
4612777 TCGGGTT
1 TCGGGTT
4612784 TC-GGTT
1 TCGGGTT
4612790 TC-GGTT
1 TCGGGTT
4612796 TCGGGTT
1 TCGGGTT
4612803 TCGGGTT
1 TCGGGTT
4612810 TCGGGTT
1 TCGGGTT
4612817 TCGGGTT
1 TCGGGTT
4612824 TCGGGTT
1 TCGGGTT
4612831 TCGGGTT
1 TCGGGTT
4612838 TCGGGTT
1 TCGGGTT
4612845 TCGGGTT
1 TCGGGTT
4612852 TCGGGTTT
1 TCGGG-TT
4612860 TCGGGTT
1 TCGGGTT
4612867 TCGGGTT
1 TCGGGTT
4612874 TCGGGTT
1 TCGGGTT
4612881 TCGGGTTT
1 TCGGG-TT
4612889 TCGGGTT
1 TCGGGTT
4612896 TCGGG-T
1 TCGGGTT
4612902 TC-GGTT
1 TCGGGTT
4612908 TCGGGTT
1 TCGGGTT
4612915 TCGGGTT
1 TCGGGTT
4612922 TCGGG-T
1 TCGGGTT
4612928 TCGGGTT
1 TCGGGTT
4612935 TC-GGTT
1 TCGGGTT
4612941 TCGGGTT
1 TCGGGTT
4612948 TCGGGTT
1 TCGGGTT
4612955 TCGGGTT
1 TCGGGTT
4612962 TC-GGTT
1 TCGGGTT
*
4612968 TAGGGTT
1 TCGGGTT
4612975 TCGGGTT
1 TCGGGTT
4612982 TCGGGTT
1 TCGGGTT
4612989 TCGGGTT
1 TCGGGTT
4612996 TCGGGTT
1 TCGGGTT
4613003 TCGGGTT
1 TCGGGTT
4613010 TCGGGAGTTT
1 TC-GG-G-TT
*
4613020 TCGAGGTA
1 TCG-GGTT
4613028 TCGGGTT
1 TCGGGTT
*
4613035 AT-GGTTT
1 -TCGGGTT
*
4613042 TACGGGTG
1 T-CGGGTT
4613050 TCGGGTT
1 TCGGGTT
4613057 CTCCGGGTT
1 -T-CGGGTT
4613066 TCGGG-T
1 TCGGGTT
4613072 TCGGGTT
1 TCGGGTT
4613079 T-GGGTAT
1 TCGGGT-T
4613086 TC-GGTT
1 TCGGGTT
*
4613092 TGGGGTT
1 TCGGGTT
4613099 TCGAGGTT
1 TCG-GGTT
4613107 TCGGGTAT
1 TCGGGT-T
4613115 T-GGGTT
1 TCGGGTT
*
4613121 TCGGGGT
1 TCGGGTT
4613128 TCGGGTT
1 TCGGGTT
4613135 TCGGGTT
1 TCGGGTT
4613142 TCAGGGTT
1 TC-GGGTT
4613150 TC-GGTT
1 TCGGGTT
*
4613156 TACTGGATTT
1 T-C-GG-GTT
4613166 ATCGGGTT
1 -TCGGGTT
*
4613174 TAGGGTT
1 TCGGGTT
4613181 TCGGGTT
1 TCGGGTT
4613188 TCGGGTT
1 TCGGGTT
4613195 TC-GGTT
1 TCGGGTT
4613201 TCGGGTT
1 TCGGGTT
4613208 TCGGGTT
1 TCGGGTT
4613215 TCGGGTT
1 TCGGGTT
4613222 TCCGAGG-T
1 T-CG-GGTT
4613230 TCGGGTT
1 TCGGGTT
4613237 TCGGGTT
1 TCGGGTT
4613244 TCGGGTT
1 TCGGGTT
4613251 TCGGGTT
1 TCGGGTT
4613258 ATC-GGTT
1 -TCGGGTT
*
4613265 TAGGGTGT
1 TCGGGT-T
4613273 TCGGGTT
1 TCGGGTT
4613280 TCGGG-T
1 TCGGGTT
4613286 TCGGGTT
1 TCGGGTT
4613293 TCGGGTTT
1 TCGGG-TT
4613301 CTCGGGTT
1 -TCGGGTT
4613309 TCGGGGTT
1 TC-GGGTT
4613317 TCGGGGTT
1 TC-GGGTT
*
4613325 CCGGG--
1 TCGGGTT
4613330 T-GGTGTT
1 TCGG-GTT
4613337 TCGAGGTT
1 TCG-GGTT
4613345 TCGGGTT
1 TCGGGTT
*
4613352 AC-GGTT
1 TCGGGTT
*
4613358 TCCGGTT
1 TCGGGTT
* *
4613365 TAGGTTTCCT
1 TCGG-GT--T
4613375 TCGGGTT
1 TCGGGTT
4613382 TCGGGTT
1 TCGGGTT
*
4613389 ATCGGGGT
1 -TCGGGTT
*
4613397 TAGGGTT
1 TCGGGTT
*
4613404 TGAGGGTT
1 T-CGGGTT
4613412 TCGGGTT
1 TCGGGTT
4613419 TCGGGTT
1 TCGGGTT
*
4613426 TCGGGGT
1 TCGGGTT
4613433 TCGGGTT
1 TCGGGTT
4613440 TCAGGGTT
1 TC-GGGTT
4613448 TCGGGTT
1 TCGGGTT
4613455 TCGGGTT
1 TCGGGTT
4613462 TCGGGTT
1 TCGGGTT
4613469 TCGGGGTT
1 TC-GGGTT
4613477 TCGGGTT
1 TCGGGTT
4613484 TC-GGTT
1 TCGGGTT
4613490 TCGGGGTT
1 TC-GGGTT
4613498 TCGGGTTT
1 TCGGG-TT
4613506 TGCGGGTT
1 T-CGGGTT
4613514 TC-GGTT
1 TCGGGTT
*
4613520 GCGGGGTT
1 TC-GGGTT
4613528 GTCCGGAGTT
1 -T-CGG-GTT
4613538 TCACGGGTAT
1 T--CGGGT-T
*
4613548 TCGGTATT
1 TCGG-GTT
4613556 TCGGGTT
1 TCGGGTT
4613563 TCAGAGGTT
1 TC-G-GGTT
4613572 T--GGTT
1 TCGGGTT
4613577 TCGGGTT
1 TCGGGTT
4613584 TCCGGGTT
1 T-CGGGTT
4613592 TCGGGTATT
1 TCGGG--TT
*
4613601 ATAGGGTT
1 -TCGGGTT
4613609 TCGGGTT
1 TCGGGTT
*
4613616 TCGGTTT
1 TCGGGTT
*
4613623 TAGGGTT
1 TCGGGTT
4613630 TCGGGTTT
1 TCGGG-TT
4613638 ATCGGGTT
1 -TCGGGTT
4613646 TCGGGTT
1 TCGGGTT
4613653 TCGGGTT
1 TCGGGTT
4613660 TCGGGTT
1 TCGGGTT
4613667 TCGGGTT
1 TCGGGTT
4613674 TCGGG-T
1 TCGGGTT
*
4613680 TCGGGGT
1 TCGGGTT
4613687 TCGGGTT
1 TCGGGTT
4613694 TCGAGGTTT
1 TCG-GG-TT
4613703 TCGGGGTT
1 TC-GGGTT
4613711 TCGGG-T
1 TCGGGTT
4613717 TCGGGTT
1 TCGGGTT
*
4613724 CCGGGTT
1 TCGGGTT
4613731 TC-GGTT
1 TCGGGTT
4613737 TCAGGGTT
1 TC-GGGTT
4613745 TACGGGGTT
1 T-C-GGGTT
4613754 TCGGGTT
1 TCGGGTT
4613761 TCGGGTT
1 TCGGGTT
4613768 GTCGGAGTT
1 -TCGG-GTT
4613777 TCGACGGTT
1 TCG--GGTT
4613786 TCCGGGTT
1 T-CGGGTT
4613794 TCGGGTT
1 TCGGGTT
4613801 TCGGGTT
1 TCGGGTT
4613808 TCGGGTTT
1 TCGGG-TT
4613816 TC-GGTAAT
1 TCGGGT--T
4613824 TCGGGTT
1 TCGGGTT
4613831 TCGCGGTT
1 TCG-GGTT
4613839 TCGGGTTT
1 TCGGG-TT
4613847 ATCGGAGTCT
1 -TCGG-GT-T
*
4613857 TCGGTTT
1 TCGGGTT
*
4613864 TCGTGTT
1 TCGGGTT
4613871 TCGGGTTTT
1 TCGGG--TT
*
4613880 TCGGAGTG
1 TCGG-GTT
*
4613888 TCGGGGGT
1 TC-GGGTT
*
4613896 CCGAGGTT
1 TCG-GGTT
4613904 TCCGGGTT
1 T-CGGGTT
4613912 TCGGGTT
1 TCGGGTT
4613919 TCGGGTT
1 TCGGGTT
4613926 TCGGAGTT
1 TCGG-GTT
4613934 TCGGG-T
1 TCGGGTT
4613940 TCGGGTT
1 TCGGGTT
4613947 TCGGGTT
1 TCGGGTT
4613954 TCCGGGTT
1 T-CGGGTT
4613962 TCCGGGTT
1 T-CGGGTT
4613970 TCGGGTTT
1 TCGGG-TT
4613978 TCGGGTTT
1 TCGGG-TT
4613986 TCGGGTT
1 TCGGGTT
4613993 TCCCGGGTTT
1 T--CGGG-TT
*
4614003 TCTGGTT
1 TCGGGTT
*
4614010 TCGGG-G
1 TCGGGTT
*
4614016 TCAGAGTTT
1 TC-G-GGTT
*
4614025 TCGGTTT
1 TCGGGTT
4614032 TCGGAGCTT
1 TCGG-G-TT
4614041 TCGGGTT
1 TCGGGTT
*
4614048 GCGGGCTT
1 TCGGG-TT
*
4614056 TCTCGGTAT
1 TC-GGGT-T
*
4614065 TCGGTTT
1 TCGGGTT
*
4614072 TAGGGTT
1 TCGGGTT
4614079 TCGGGTT
1 TCGGGTT
4614086 TC-GGTT
1 TCGGGTT
4614092 CTCGGGTT
1 -TCGGGTT
4614100 TACGGGCTT
1 T-CGGG-TT
4614109 TCAGGGTTT
1 TC-GGG-TT
4614118 TCCGGGTT
1 T-CGGGTT
4614126 ACTCCGGGTT
1 --T-CGGGTT
*
4614136 TCCTGGTT
1 T-CGGGTT
4614144 TC-GGTT
1 TCGGGTT
4614150 TCCGGGTT
1 T-CGGGTT
4614158 TCGGG-T
1 TCGGGTT
4614164 TCGGGTT
1 TCGGGTT
***
4614171 TTTCGTT
1 TCGGGTT
4614178 TCGGGGTT
1 TC-GGGTT
4614186 TCGGGTGT
1 TCGGGT-T
4614194 TCGGGATT
1 TCGGG-TT
4614202 TCGGGTT
1 TCGGGTT
*
4614209 TCAGGG-G
1 TC-GGGTT
4614216 TCGGGTT
1 TCGGGTT
*
4614223 GCCGACGGTT
1 -TCG--GGTT
4614233 TACCGGGTAT
1 T--CGGGT-T
4614243 TCGGGTT
1 TCGGGTT
4614250 TCGGGTT
1 TCGGGTT
4614257 TC-GGTT
1 TCGGGTT
4614263 TCGGAGTTT
1 TCGG-G-TT
4614272 TCGGAGTT
1 TCGG-GTT
4614280 TCGGGTT
1 TCGGGTT
4614287 TCCGAGG-T
1 T-CG-GGTT
4614295 TCGGAGTT
1 TCGG-GTT
*
4614303 TCGATGTTT
1 TCG--GGTT
4614312 TACGGGTT
1 T-CGGGTT
4614320 TCGGGTT
1 TCGGGTT
4614327 TCGCGACG-T
1 TCG-G--GTT
4614336 TCGGGTTT
1 TCGGG-TT
4614344 TAC-GG-T
1 T-CGGGTT
*
4614350 TAGGAGATTT
1 TCGG-G--TT
4614360 TCGGGTT
1 TCGGGTT
*
4614367 TCCCGAGTT
1 T--CGGGTT
4614376 TC-GGTT
1 TCGGGTT
4614382 TCGGGTT
1 TCGGGTT
4614389 TCGGAGTT
1 TCGG-GTT
4614397 TCCGGAGTT
1 T-CGG-GTT
4614406 TCGGGTT
1 TCGGGTT
4614413 TCGGGGTTT
1 TC-GGG-TT
4614422 TC-GGTT
1 TCGGGTT
4614428 TCGGGTT
1 TCGGGTT
4614435 TCCGGGTTT
1 T-CGGG-TT
4614444 TCGGGTT
1 TCGGGTT
4614451 TCGGGTT
1 TCGGGTT
4614458 ATCAGGGTT
1 -TC-GGGTT
4614467 TCGAGGTTAT
1 TCG-GG-T-T
4614477 TCGGGGTTT
1 TC-GGG-TT
4614486 TCCGGGTGTT
1 T-C-GG-GTT
4614496 ATCGGGTT
1 -TCGGGTT
4614504 TCGGAGTT
1 TCGG-GTT
4614512 TCCGGGATT
1 T-CGGG-TT
4614521 TCGGGTT
1 TCGGGTT
*
4614528 ATCAGGCTT
1 -TC-GGGTT
*
4614537 TCGGGGT
1 TCGGGTT
4614544 TCGGGTT
1 TCGGGTT
4614551 ATGCGGGTATT
1 -T-CGGG--TT
4614562 TCCCGGGTT
1 T--CGGGTT
4614571 TCGAGGTT
1 TCG-GGTT
4614579 ATCGGGTT
1 -TCGGGTT
4614587 ATCGGAGTT
1 -TCGG-GTT
4614596 TCGGG-T
1 TCGGGTT
4614602 TCGGGTT
1 TCGGGTT
4614609 TCGGAGTT
1 TCGG-GTT
4614617 TCGGGTTT
1 TCGGG-TT
4614625 TCGCGGTT
1 TCG-GGTT
4614633 TCGGGTTT
1 TCGGG-TT
4614641 TC-GGTAT
1 TCGGGT-T
4614648 TCGGG-T
1 TCGGGTT
4614654 TCGGGTT
1 TCGGGTT
4614661 TCGGGTT
1 TCGGGTT
4614668 TACGGGTTT
1 T-CGGG-TT
4614677 GTCGGGTGT
1 -TCGGGT-T
4614686 TCGGGTT
1 TCGGGTT
4614693 TCAACGAAGGTT
1 T---CG--GGTT
4614705 TCGAAGGTT
1 TCG--GGTT
4614714 TCAGGGTT
1 TC-GGGTT
4614722 TCAGGGTT
1 TC-GGGTT
4614730 TCGTAGGTT
1 TCG--GGTT
4614739 TCGGAGTT
1 TCGG-GTT
4614747 TC-GGTT
1 TCGGGTT
4614753 TCAGGG-T
1 TC-GGGTT
4614760 TC-GGTT
1 TCGGGTT
4614766 TCGGGTT
1 TCGGGTT
4614773 T-GGGTAT
1 TCGGGT-T
4614780 TCGGGTT
1 TCGGGTT
4614787 TCGGGTT
1 TCGGGTT
*
4614794 TAGGGTT
1 TCGGGTT
4614801 TC-GGTT
1 TCGGGTT
*
4614807 TCGGGGTA
1 TC-GGGTT
*
4614815 TCGAGTT
1 TCGGGTT
4614822 TCGGGTT
1 TCGGGTT
4614829 TCGGGTATTT
1 TCGGG---TT
*
4614839 TCGGGGT
1 TCGGGTT
4614846 TCGGGTT
1 TCGGGTT
4614853 TCGGGGTT
1 TC-GGGTT
4614861 TCGGGTTT
1 TCGGG-TT
4614869 TC-GGTT
1 TCGGGTT
4614875 TCGGGTT
1 TCGGGTT
*
4614882 GCGGGTT
1 TCGGGTT
4614889 TCGGGTT
1 TCGGGTT
*
4614896 TCGGTTT
1 TCGGGTT
*
4614903 TC-GGTG
1 TCGGGTT
4614909 TCGAGGTT
1 TCG-GGTT
4614917 TCGAGGTT
1 TCG-GGTT
4614925 TCCGGGTT
1 T-CGGGTT
4614933 TCGGGTT
1 TCGGGTT
4614940 T-GGG-T
1 TCGGGTT
4614945 TC-GGTT
1 TCGGGTT
*
4614951 TCGGGTA
1 TCGGGTT
4614958 TCGGG-T
1 TCGGGTT
4614964 TC-GGTT
1 TCGGGTT
4614970 TCGGGTTT
1 TCGGG-TT
4614978 TCGGGTT
1 TCGGGTT
4614985 TCGAGGTT
1 TCG-GGTT
*
4614993 TCGGATT
1 TCGGGTT
4615000 TCGGGTT
1 TCGGGTT
4615007 TCGGGTT
1 TCGGGTT
4615014 TCGGGTT
1 TCGGGTT
4615021 TCGGAGTT
1 TCGG-GTT
4615029 TCGGGTGT
1 TCGGGT-T
*
4615037 ACAGGGTT
1 TC-GGGTT
4615045 TCGGGTT
1 TCGGGTT
*
4615052 TCGGGTG
1 TCGGGTT
4615059 TCGGGTT
1 TCGGGTT
4615066 TCGGGTT
1 TCGGGTT
*
4615073 TCGGGTA
1 TCGGGTT
4615080 TCGGGTT
1 TCGGGTT
4615087 TCGGGTT
1 TCGGGTT
4615094 TAACAGGAGTT
1 T--C-GG-GTT
*
4615105 TACGGGTG
1 T-CGGGTT
4615113 TCGGG-T
1 TCGGGTT
4615119 TCTGGGTT
1 TC-GGGTT
4615127 TCGGGTTAT
1 TCGGG-T-T
*
4615136 TCGGGTG
1 TCGGGTT
4615143 TCGGGTT
1 TCGGGTT
4615150 TCGGGGTT
1 TC-GGGTT
4615158 TCGGGTT
1 TCGGGTT
4615165 TACGGGTCT
1 T-CGGGT-T
4615174 TCGGGTT
1 TCGGGTT
*
4615181 ATCCAGGTT
1 -T-CGGGTT
4615190 TCCGGG-T
1 T-CGGGTT
4615197 TCGAGGTATT
1 TCG-GG--TT
*
4615207 TCAGGTT
1 TCGGGTT
* *
4615214 CCGGGAT
1 TCGGGTT
4615221 TC--GTT
1 TCGGGTT
4615226 TC---TT
1 TCGGGTT
*
4615230 TCCCGG-T
1 T-CGGGTT
*
4615237 TCAGGTT
1 TCGGGTT
4615244 TCGGGTT
1 TCGGGTT
4615251 TCCGGGTT
1 T-CGGGTT
4615259 TCGGGTT
1 TCGGGTT
*
4615266 AGCCGGGTT
1 --TCGGGTT
4615275 TC-GGTT
1 TCGGGTT
4615281 TCGAGGTGTTTT
1 TC--GG-G--TT
4615293 TCAGGGTT
1 TC-GGGTT
4615301 TCGGG-T
1 TCGGGTT
4615307 TCGGG-T
1 TCGGGTT
4615313 TCGGGGTT
1 TC-GGGTT
* *
4615321 CCGGTTT
1 TCGGGTT
4615328 TCGGGTT
1 TCGGGTT
4615335 TCGGGTTAT
1 TCGGG-T-T
*
4615344 TCGAGGTA
1 TCG-GGTT
4615352 TCGGGTTT
1 TCGGG-TT
*
4615360 TAGGG-T
1 TCGGGTT
4615366 TCGGGTTTT
1 TCGGG--TT
4615375 TCGGGTT
1 TCGGGTT
4615382 TCGGAGTT
1 TCGG-GTT
4615390 TCGGGTT
1 TCGGGTT
4615397 TCGGGTTT
1 TCGGG-TT
*
4615405 TCGGGTC
1 TCGGGTT
*
4615412 GCAGGGTT
1 TC-GGGTT
4615420 TCGGGTTT
1 TCGGG-TT
4615428 TCGGGTT
1 TCGGGTT
4615435 TCGAGGTTT
1 TCG-GG-TT
4615444 TCGGGTT
1 TCGGGTT
4615451 TCGGGTAT
1 TCGGGT-T
4615459 TC-GGTT
1 TCGGGTT
4615465 TCGCGGTT
1 TCG-GGTT
4615473 TCGGGTT
1 TCGGGTT
*
4615480 TCGGGTG
1 TCGGGTT
****
4615487 T-GACAC
1 TCGGGTT
*
4615493 ACAGGGTT
1 TC-GGGTT
4615501 T-GGGTT
1 TCGGGTT
*
4615507 GCGGGTT
1 TCGGGTT
4615514 TC-GGTT
1 TCGGGTT
4615520 ATCAGAGGTT
1 -TC-G-GGTT
4615530 TCGGAGTT
1 TCGG-GTT
4615538 TCGGAGGTT
1 TC-G-GGTT
*
4615547 TAAGGGGTT
1 T--CGGGTT
4615556 T-GGGTT
1 TCGGGTT
4615562 TCGGGTTT
1 TCGGG-TT
*
4615570 TCGGGTG
1 TCGGGTT
4615577 TCGGGTTGT
1 TCGGG-T-T
4615586 TCGGGTT
1 TCGGGTT
*
4615593 T-GGGGT
1 TCGGGTT
4615599 TCGAGGTT
1 TCG-GGTT
4615607 TCGGGATT
1 TCGGG-TT
4615615 TCGGGTT
1 TCGGGTT
*
4615622 TACGGGGGT
1 T-C-GGGTT
*
4615631 T--GTTT
1 TCGGGTT
*
4615636 TCCGGTT
1 TCGGGTT
4615643 ATCGAGGTTTAT
1 -TCG-GG--T-T
4615655 TCGGAAGTT
1 TCGG--GTT
4615664 TCGAGGTTT
1 TCG-GG-TT
4615673 TC-GGTT
1 TCGGGTT
*
4615679 ATCGGTTT
1 -TCGGGTT
4615687 TCGGGTT
1 TCGGGTT
4615694 TCAGGG-T
1 TC-GGGTT
4615701 TCGGGTT
1 TCGGGTT
4615708 TACGGGGTT
1 T-C-GGGTT
4615717 TCGGGTT
1 TCGGGTT
4615724 TCGGGTT
1 TCGGGTT
4615731 TACGGGTT
1 T-CGGGTT
* *
4615739 CACCGAGTT
1 --TCGGGTT
4615748 TCACGGGTT
1 T--CGGGTT
4615757 TCGGGTT
1 TCGGGTT
*******
4615764 AATAAAA
1 TCGGGTT
4615771 TCGGG--
1 TCGGGTT
*
4615776 TGGGGTT
1 TCGGGTT
*
4615783 ATCGGATAT
1 -TCGGGT-T
4615792 ATCGGGTT
1 -TCGGGTT
4615800 TCGGGTT
1 TCGGGTT
4615807 TCGGAGTT
1 TCGG-GTT
*
4615815 TGGGGTT
1 TCGGGTT
4615822 TCGAGGGTT
1 TC--GGGTT
*
4615831 TGGGGATGAT
1 TCGGG-T--T
* *
4615841 CTGGGAGTG
1 -TCGG-GTT
*
4615850 TGGAGGCTT
1 TCG-GG-TT
*
4615859 TGGGGTAT
1 TCGGGT-T
*
4615867 TGAGGGGTT
1 T--CGGGTT
* *
4615876 TGGGGGAT
1 T-CGGGTT
4615884 TCGGGGGTT
1 TC--GGGTT
*
4615893 TGGGAGTCT
1 TCGG-GT-T
4615902 T-GGGTTT
1 TCGGG-TT
*
4615909 TGGGGTTT
1 TCGGG-TT
*
4615917 TGGGGTT
1 TCGGGTT
4615924 TCGGGAGTAT
1 TC-GG-GT-T
4615934 TC-GGTT
1 TCGGGTT
**
4615940 GGGGGTT
1 TCGGGTT
*
4615947 TGGGGTT
1 TCGGGTT
*
4615954 GCGGGTATT
1 TCGGG--TT
*
4615963 TGGGGTT
1 TCGGGTT
*
4615970 TGGGGTT
1 TCGGGTT
*
4615977 TAGGAGGTT
1 T-CG-GGTT
*
4615986 TGGGGTT
1 TCGGGTT
*
4615993 TGGGGTT
1 TCGGGTT
4616000 T-GGG-T
1 TCGGGTT
*
4616005 TGGGGTT
1 TCGGGTT
** *
4616012 GGGGGGT
1 TCGGGTT
*
4616019 TGGGGTTT
1 TCGGG-TT
*
4616027 TGGGGTTT
1 TCGGG-TT
*
4616035 TGAGGGTTT
1 T-CGGG-TT
*
4616044 TGGGGGTT
1 T-CGGGTT
*
4616052 TTGGGTT
1 TCGGGTT
4616059 T-GGGTT
1 TCGGGTT
*
4616065 TGGGGTT
1 TCGGGTT
4616072 TCGGGTT
1 TCGGGTT
4616079 TCGGG-T
1 TCGGGTT
4616085 TCGGGTT
1 TCGGGTT
4616092 TCGGGGTT
1 TC-GGGTT
4616100 TCCGGGTT
1 T-CGGGTT
4616108 TCGGGCTT
1 TCGGG-TT
4616116 TCGGGTCT
1 TCGGGT-T
4616124 TC-GGTT
1 TCGGGTT
4616130 TCGGGTT
1 TCGGGTT
*
4616137 TCGGGAT
1 TCGGGTT
4616144 TCGGGTT
1 TCGGGTT
4616151 TACAGGGTTT
1 T-C-GGG-TT
4616161 TCGGGTT
1 TCGGGTT
*
4616168 TCCGGTTT
1 T-CGGGTT
*
4616176 TC-GGTGA
1 TCGGGT-T
4616183 TC-GGTT
1 TCGGGTT
*
4616189 TAGGGTT
1 TCGGGTT
4616196 TCGGGTT
1 TCGGGTT
4616203 TACGGAGTT
1 T-CGG-GTT
4616212 TCGGGTATATT
1 TCGGG----TT
4616223 TACGGGTT
1 T-CGGGTT
*
4616231 TGGGGTT
1 TCGGGTT
4616238 TCGGGTT
1 TCGGGTT
4616245 TCGGGTT
1 TCGGGTT
4616252 TCGGGGTT
1 TC-GGGTT
4616260 TCGGG-T
1 TCGGGTT
4616266 TCGCAGGTT
1 TCG--GGTT
4616275 TCGGGTT
1 TCGGGTT
4616282 TCGGGTAT
1 TCGGGT-T
4616290 ATCGGGCTTT
1 -TCGGG--TT
4616300 TCGGGTT
1 TCGGGTT
* *
4616307 T-TGGTG
1 TCGGGTT
4616313 TCGGAGTCT
1 TCGG-GT-T
4616322 TCGGGTT
1 TCGGGTT
4616329 TCGGGTT
1 TCGGGTT
4616336 TCGGGTTT
1 TCGGG-TT
*
4616344 TAGGGATT
1 TCGGG-TT
4616352 TCCGGGTTT
1 T-CGGG-TT
4616361 TCGGGTT
1 TCGGGTT
4616368 TCAGGGTTT
1 TC-GGG-TT
4616377 TCGGGTTTT
1 TCGGG--TT
4616386 TCGGGTT
1 TCGGGTT
*
4616393 TCTGGTT
1 TCGGGTT
4616400 TCGGGTT
1 TCGGGTT
4616407 TC-GGTT
1 TCGGGTT
*
4616413 TCACGGGGAT
1 T--C-GGGTT
4616423 TCGGGTT
1 TCGGGTT
4616430 TCGGGTAT
1 TCGGGT-T
4616438 TCGGG-T
1 TCGGGTT
4616444 TCGGGTT
1 TCGGGTT
4616451 ATCGGGTTAT
1 -TCGGG-T-T
4616461 TCGGGTT
1 TCGGGTT
4616468 TCGGGTT
1 TCGGGTT
*
4616475 GCGGGTT
1 TCGGGTT
*
4616482 GCGCGGTT
1 TCG-GGTT
4616490 TCGGGTTT
1 TCGGG-TT
4616498 TCGGGATT
1 TCGGG-TT
*
4616506 TCGGGTC
1 TCGGGTT
4616513 TCGGGTT
1 TCGGGTT
*
4616520 TGAGGGGTTT
1 T--CGGG-TT
4616530 TCGGGTT
1 TCGGGTT
4616537 TCGAGGTT
1 TCG-GGTT
4616545 CTCGGGTT
1 -TCGGGTT
* *
4616553 CCGTGTT
1 TCGGGTT
4616560 TC-GGTT
1 TCGGGTT
*
4616566 GCGGG-T
1 TCGGGTT
4616572 TCGGGGATT
1 TC-GGG-TT
4616581 TCGGGATT
1 TCGGG-TT
4616589 TCGAGGTT
1 TCG-GGTT
4616597 TCGGG-T
1 TCGGGTT
4616603 TC-GGTT
1 TCGGGTT
4616609 TCGGGTTTTT
1 TCGGG---TT
4616619 TCGAGGTT
1 TCG-GGTT
4616627 TCGGGTT
1 TCGGGTT
4616634 TCAGGGTT
1 TC-GGGTT
4616642 TCCCGGGTT
1 T--CGGGTT
4616651 TGCGGGTT
1 T-CGGGTT
4616659 TCGGGTT
1 TCGGGTT
*
4616666 TGGGGTT
1 TCGGGTT
4616673 TGCGGG-T
1 T-CGGGTT
4616680 TCGGGTT
1 TCGGGTT
4616687 TCGGGTT
1 TCGGGTT
*
4616694 TAAGGGTT
1 T-CGGGTT
4616702 TCGGGTT
1 TCGGGTT
4616709 TCCGGGTT
1 T-CGGGTT
4616717 TCGAGGTT
1 TCG-GGTT
4616725 TCGAGGTAT
1 TCG-GGT-T
*
4616734 TCAGGGAGGT
1 TC--GG-GTT
*
4616744 TCGGAGAT
1 TCGG-GTT
4616752 TCGGG-T
1 TCGGGTT
4616758 TC-GGTT
1 TCGGGTT
*
4616764 GCGGGTAT
1 TCGGGT-T
4616772 ATCGGAG-T
1 -TCGG-GTT
4616780 TCGGGTTT
1 TCGGG-TT
4616788 TCGGGTTTT
1 TCGGG--TT
*
4616797 TCGGGTGG
1 TCGGGT-T
*
4616805 CCGGGTT
1 TCGGGTT
4616812 T-GGGTT
1 TCGGGTT
4616818 TCGGGTT
1 TCGGGTT
*
4616825 GCGGGTT
1 TCGGGTT
4616832 TC-GGTT
1 TCGGGTT
4616838 TCGGGTT
1 TCGGGTT
4616845 TCGGGTT
1 TCGGGTT
4616852 TCGGGTT
1 TCGGGTT
*
4616859 TCCCGGTT
1 T-CGGGTT
*
4616867 TCCGGTT
1 TCGGGTT
4616874 TCGGGTT
1 TCGGGTT
4616881 TCGGGTT
1 TCGGGTT
4616888 TCGAGGTGT
1 TCG-GGT-T
*
4616897 TAGGCGTT
1 TCGG-GTT
*
4616905 TACGGGATG
1 T-CGGG-TT
4616914 TCGGGTATT
1 TCGGG--TT
4616923 TCGAGAGTT
1 TCG-G-GTT
4616932 TCACGGGTT
1 T--CGGGTT
4616941 TCGGG-T
1 TCGGGTT
4616947 TC-GGTT
1 TCGGGTT
4616953 TCAGGGTT
1 TC-GGGTT
*
4616961 T-GTGTAT
1 TCGGGT-T
4616968 TCGGGTT
1 TCGGGTT
4616975 TCGGAGTT
1 TCGG-GTT
*
4616983 GCAGGG-T
1 TC-GGGTT
4616990 TCGGGTT
1 TCGGGTT
*
4616997 TCTGGTT
1 TCGGGTT
4617004 TCGGGTT
1 TCGGGTT
4617011 TCGGGTT
1 TCGGGTT
4617018 TCGGGGTAT
1 TC-GGGT-T
4617027 TCGAGGTT
1 TCG-GGTT
4617035 TCCGGGTT
1 T-CGGGTT
4617043 TCGGGTT
1 TCGGGTT
4617050 TCGGGTGT
1 TCGGGT-T
4617058 TCGGGTTGT
1 TCGGG-T-T
4617067 TCGGGTT
1 TCGGGTT
4617074 TCGGGTTT
1 TCGGG-TT
4617082 GTCCGGGTT
1 -T-CGGGTT
4617091 TCGGGTT
1 TCGGGTT
4617098 TCGGGTT
1 TCGGGTT
4617105 TC-GGTT
1 TCGGGTT
4617111 GTCCCGGGTT
1 -T--CGGGTT
4617121 TC-GGTT
1 TCGGGTT
*
4617127 TACCCGGTT
1 T--CGGGTT
4617136 ATCGGGTT
1 -TCGGGTT
4617144 TCGCGGATT
1 TCG-GG-TT
4617153 TCGGGCTT
1 TCGGG-TT
4617161 TC-GGTT
1 TCGGGTT
4617167 TCGGGTT
1 TCGGGTT
4617174 TACGGAGTT
1 T-CGG-GTT
*
4617183 GACGGGTT
1 -TCGGGTT
*
4617191 TCGTGTTT
1 TCG-GGTT
**
4617199 TCCCCGGGGG
1 T---CGGGTT
**
4617209 GGGGGTT
1 TCGGGTT
**
4617216 T-TTG-T
1 TCGGGTT
4617221 TCGGGTT
1 TCGGGTT
4617228 T-GGGTT
1 TCGGGTT
4617234 TC-GGTT
1 TCGGGTT
4617240 TCGGGTTTAT
1 TCGGG--T-T
4617250 TCGGGTT
1 TCGGGTT
4617257 TCGGGTT
1 TCGGGTT
4617264 TCGGGTTT
1 TCGGG-TT
4617272 TCCGAGGTTT
1 T-CG-GG-TT
4617282 TCCACGGGTT
1 T---CGGGTT
4617292 TCGGGTT
1 TCGGGTT
4617299 TCGGGGTGT
1 TC-GGGT-T
4617308 TCGGGTT
1 TCGGGTT
4617315 TC-GGTT
1 TCGGGTT
*
4617321 TCGGTTT
1 TCGGGTT
4617328 TCGGGTT
1 TCGGGTT
4617335 TCGGGTT
1 TCGGGTT
4617342 TCGGGTT
1 TCGGGTT
4617349 ATCGGGTT
1 -TCGGGTT
4617357 TACGGGTT
1 T-CGGGTT
**
4617365 GAGGGTTT
1 TCGGG-TT
4617373 TCGGGTTT
1 TCGGG-TT
4617381 GTCAGGG-T
1 -TC-GGGTT
4617389 TCGGGTT
1 TCGGGTT
4617396 TCGGGTT
1 TCGGGTT
*
4617403 CCGGGTT
1 TCGGGTT
4617410 TCGGGTT
1 TCGGGTT
4617417 TCCGGGTTT
1 T-CGGG-TT
4617426 TC-GGTAT
1 TCGGGT-T
*
4617433 TTGATCGGTT
1 TCG---GGTT
4617443 TACGGGTT
1 T-CGGGTT
*
4617451 TACGAGTT
1 T-CGGGTT
4617459 TACGGGTTT
1 T-CGGG-TT
4617468 TCGGGATT
1 TCGGG-TT
4617476 TCGGG-T
1 TCGGGTT
4617482 TCAGGAGTT
1 TC-GG-GTT
4617491 TCGGGCTT
1 TCGGG-TT
4617499 TCAGGGTT
1 TC-GGGTT
4617507 TCGGGTT
1 TCGGGTT
*
4617514 TCCGAGTT
1 T-CGGGTT
*
4617522 TCAAGGG-G
1 TC--GGGTT
4617530 TCAGGGTT
1 TC-GGGTT
4617538 TCAGGGTT
1 TC-GGGTT
4617546 TCGGGTGT
1 TCGGGT-T
4617554 TCGGGGTT
1 TC-GGGTT
4617562 TCGGGTT
1 TCGGGTT
4617569 TACGGG-T
1 T-CGGGTT
4617576 T-GGGTTT
1 TCGGG-TT
4617583 TCGGGTT
1 TCGGGTT
4617590 TCGGG-T
1 TCGGGTT
4617596 TCGGGTTT
1 TCGGG-TT
4617604 TCGCGGTT
1 TCG-GGTT
4617612 TCGGGTAT
1 TCGGGT-T
4617620 TC-GGTT
1 TCGGGTT
*
4617626 TCGGTCACTT
1 TCGG---GTT
*
4617636 TCTGGTT
1 TCGGGTT
4617643 TCGGGTGT
1 TCGGGT-T
4617651 TCGGGTT
1 TCGGGTT
4617658 TACGGAGATT
1 T-CGG-G-TT
4617668 TCGGGTATT
1 TCGGG--TT
*
4617677 TAGGGTTT
1 TCGGG-TT
4617685 TCGGGTT
1 TCGGGTT
4617692 TCGGGTT
1 TCGGGTT
4617699 TCGGGTT
1 TCGGGTT
4617706 TCGGG-T
1 TCGGGTT
4617712 TCAGGGTT
1 TC-GGGTT
4617720 TC-GGTGT
1 TCGGGT-T
*
4617727 CCGGGGGTAT
1 TC--GGGT-T
4617737 TCGGAGTT
1 TCGG-GTT
*
4617745 ATCCGAGTTT
1 -T-CG-GGTT
4617755 TC-GGTGT
1 TCGGGT-T
4617762 TCGGGTTT
1 TCGGG-TT
4617770 TCCGAGGTT
1 T-CG-GGTT
4617779 TC-GGTT
1 TCGGGTT
4617785 TGCGGGTTT
1 T-CGGG-TT
4617794 ATCGGGTT
1 -TCGGGTT
4617802 TCGGGTT
1 TCGGGTT
4617809 TCGGGATT
1 TCGGG-TT
4617817 TCAAGGGTT
1 TC--GGGTT
4617826 TCGAGGTT
1 TCG-GGTT
4617834 TCGGGTT
1 TCGGGTT
*
4617841 CCGGGTT
1 TCGGGTT
4617848 TCGGGATT
1 TCGGG-TT
4617856 TCCGGGTTT
1 T-CGGG-TT
*
4617865 TCGGGATG
1 TCGGG-TT
*
4617873 ACGGGATT
1 TCGGG-TT
4617881 TCGGGTT
1 TCGGGTT
4617888 TC-GGTT
1 TCGGGTT
4617894 T-GGGTT
1 TCGGGTT
4617900 TCGGGTCT
1 TCGGGT-T
4617908 TCGGGTTT
1 TCGGG-TT
4617916 AATCGGGTTAT
1 --TCGGG-T-T
4617927 TCGGGTTT
1 TCGGG-TT
4617935 TC-GGTT
1 TCGGGTT
4617941 TCGGGTT
1 TCGGGTT
4617948 TC-GGTAT
1 TCGGGT-T
4617955 TCGGAGTT
1 TCGG-GTT
4617963 TC-GGTT
1 TCGGGTT
4617969 TCTGGG-T
1 TC-GGGTT
4617976 TCGGAGTT
1 TCGG-GTT
4617984 TCCGGGTT
1 T-CGGGTT
4617992 TACGGGTT
1 T-CGGGTT
4618000 TCAAGGGTT
1 TC--GGGTT
*
4618009 GCGGGTT
1 TCGGGTT
*
4618016 CCGAGAGTT
1 TCG-G-GTT
4618025 GTCGGGGTT
1 -TC-GGGTT
4618034 TCGGGTAT
1 TCGGGT-T
4618042 TCGAGAAGTT
1 TCG-G--GTT
**
4618052 GAGGGATT
1 TCGGG-TT
4618060 TACGGGTTT
1 T-CGGG-TT
*
4618069 TCGGTTT
1 TCGGGTT
4618076 TCGGGTT
1 TCGGGTT
*
4618083 TAGGGTTT
1 TCGGG-TT
4618091 TCGGGTAT
1 TCGGGT-T
4618099 TCGGGTT
1 TCGGGTT
4618106 TCGGGGATT
1 TC-GGG-TT
*
4618115 GCGGGTAT
1 TCGGGT-T
4618123 TCGGGTT
1 TCGGGTT
*
4618130 TACGGTTT
1 T-CGGGTT
4618138 CTCGGGCTT
1 -TCGGG-TT
4618147 TCGGGTT
1 TCGGGTT
4618154 TCCGGGTT
1 T-CGGGTT
4618162 TCGGGTTAT
1 TCGGG-T-T
4618171 TCCGGG-T
1 T-CGGGTT
4618178 TCGGAGTT
1 TCGG-GTT
4618186 TCGGGTGTT
1 TC-GG-GTT
4618195 TCGGGTT
1 TCGGGTT
4618202 TCAGGGTT
1 TC-GGGTT
4618210 TC-GGTT
1 TCGGGTT
*
4618216 TCGGGAGT
1 TCGGG-TT
4618224 TCAGAGGTT
1 TC-G-GGTT
4618233 TCGGG-T
1 TCGGGTT
*
4618239 TAGGGCTT
1 TCGGG-TT
*
4618247 GACGGGATT
1 -TCGGG-TT
4618256 TCGGGTT
1 TCGGGTT
4618263 TCGAGGTT
1 TCG-GGTT
*
4618271 AGCGGGTT
1 -TCGGGTT
4618279 TCGGGTT
1 TCGGGTT
4618286 TCGGAGTT
1 TCGG-GTT
4618294 TCGGGTTT
1 TCGGG-TT
4618302 TCGGGTT
1 TCGGGTT
4618309 GTCGGGTT
1 -TCGGGTT
4618317 TCGGGTT
1 TCGGGTT
4618324 TCGGGTT
1 TCGGGTT
4618331 TCAGGGTT
1 TC-GGGTT
4618339 TCGGGTT
1 TCGGGTT
4618346 ATCGGGGTT
1 -TC-GGGTT
*
4618355 ACGGGTTT
1 TCGGG-TT
*
4618363 TCAGGTT
1 TCGGGTT
4618370 TCGGGTT
1 TCGGGTT
4618377 TCCGGGTT
1 T-CGGGTT
4618385 TCGGGTT
1 TCGGGTT
4618392 TACGGAGTT
1 T-CGG-GTT
*
4618401 TGGGGCTT
1 TCGGG-TT
4618409 TCGGGTT
1 TCGGGTT
4618416 TCGGGTT
1 TCGGGTT
*
4618423 TC-GGTA
1 TCGGGTT
*
4618429 GCGGG-T
1 TCGGGTT
4618435 TCGGGTT
1 TCGGGTT
*
4618442 TCGGTTT
1 TCGGGTT
*
4618449 TCAGG-T
1 TCGGGTT
4618455 TC-GGTT
1 TCGGGTT
4618461 TCGGGTT
1 TCGGGTT
4618468 TCGGGTT
1 TCGGGTT
4618475 TCGGGTT
1 TCGGGTT
4618482 TCCGGG-T
1 T-CGGGTT
4618489 TCGGGTT
1 TCGGGTT
4618496 TCGGGTT
1 TCGGGTT
4618503 TCGGG-T
1 TCGGGTT
4618509 TCGGGTT
1 TCGGGTT
*
4618516 TAAGGGTT
1 T-CGGGTT
4618524 TCGGGTT
1 TCGGGTT
*
4618531 GACCCGGGTT
1 ---TCGGGTT
4618541 TCGGGTTTT
1 TCGGG--TT
4618550 TCCGGGTT
1 T-CGGGTT
4618558 TC-GGTT
1 TCGGGTT
4618564 TCGGGTT
1 TCGGGTT
4618571 T-GGGTT
1 TCGGGTT
4618577 TCCGGAGTTT
1 T-CGG-G-TT
4618587 TCGGG-T
1 TCGGGTT
*
4618593 TCGGTTAT
1 TCGGGT-T
*
4618601 TCGAGTTT
1 TCG-GGTT
4618609 TCGGG-T
1 TCGGGTT
4618615 TCGGGTT
1 TCGGGTT
4618622 TCGGGTT
1 TCGGGTT
4618629 GTCGGG-T
1 -TCGGGTT
4618636 TCGGGTT
1 TCGGGTT
4618643 TCGGGTT
1 TCGGGTT
4618650 TCGGGTT
1 TCGGGTT
4618657 TCGGGATT
1 TCGGG-TT
4618665 TCAGGGTT
1 TC-GGGTT
4618673 TCGGGTT
1 TCGGGTT
4618680 TCAGGGATT
1 TC-GGG-TT
4618689 TCCGGGTT
1 T-CGGGTT
4618697 TCGGGTT
1 TCGGGTT
4618704 TCGGG-T
1 TCGGGTT
4618710 TCGGGTT
1 TCGGGTT
4618717 TCGGGTT
1 TCGGGTT
4618724 TCGGGTT
1 TCGGGTT
*
4618731 TCGGGGT
1 TCGGGTT
4618738 TC-GGTT
1 TCGGGTT
*
4618744 ACGGGTT
1 TCGGGTT
4618751 TC-GGTT
1 TCGGGTT
*
4618757 TTGGGTT
1 TCGGGTT
4618764 T-GGGTCT
1 TCGGGT-T
4618771 TCGGGTT
1 TCGGGTT
4618778 TCGGAAAGTT
1 TCGG---GTT
4618788 TCGAGGTT
1 TCG-GGTT
4618796 TCGGG-T
1 TCGGGTT
4618802 TCGGGTT
1 TCGGGTT
4618809 TCGGGTT
1 TCGGGTT
*
4618816 TAACGGGGT
1 T--CGGGTT
4618825 TCGGGTT
1 TCGGGTT
4618832 TCGAGGTGAT
1 TCG-GGT--T
4618842 TCGGGTT
1 TCGGGTT
4618849 TCGGGTT
1 TCGGGTT
4618856 TACGAGAGTT
1 T-CG-G-GTT
*
4618866 TCAGGGTG
1 TC-GGGTT
4618874 TCGGGTT
1 TCGGGTT
4618881 ATCAGGGTT
1 -TC-GGGTT
*
4618890 TAAGGGTT
1 T-CGGGTT
*
4618898 TCTAGGTT
1 TC-GGGTT
4618906 TACGGGCTGT
1 T-CGGG-T-T
*
4618916 CCCGGGTT
1 -TCGGGTT
4618924 TCGCGGTT
1 TCG-GGTT
4618932 TCGGGTT
1 TCGGGTT
4618939 TACAGGGTT
1 T-C-GGGTT
4618948 TCGGAGTT
1 TCGG-GTT
*
4618956 T-GGATT
1 TCGGGTT
4618962 TACGGGTAT
1 T-CGGGT-T
*
4618971 CGCGGGTAT
1 -TCGGGT-T
4618980 TCGGGTT
1 TCGGGTT
4618987 TCGGGGTT
1 TC-GGGTT
4618995 TCGGAGATTT
1 TCGG-G--TT
4619005 TCGGGTT
1 TCGGGTT
*
4619012 ATACCGAGTT
1 -T--CGGGTT
*
4619022 TCAGGTT
1 TCGGGTT
*
4619029 AGCGAGGTT
1 -TCG-GGTT
*
4619038 TCGAGGTAG
1 TCG-GGT-T
4619047 TCGGGTAT
1 TCGGGT-T
4619055 TCGGGTT
1 TCGGGTT
*
4619062 TAGGGTT
1 TCGGGTT
4619069 TCGGGTT
1 TCGGGTT
4619076 TCGGGTT
1 TCGGGTT
4619083 TCGGG-T
1 TCGGGTT
4619089 TC-GGTT
1 TCGGGTT
*
4619095 TCGGGTG
1 TCGGGTT
4619102 TCGGGTTT
1 TCGGG-TT
4619110 TCGCGGTT
1 TCG-GGTT
4619118 TC-GGTT
1 TCGGGTT
4619124 TCGGGTT
1 TCGGGTT
4619131 TCGGG-T
1 TCGGGTT
4619137 TCGGGTT
1 TCGGGTT
4619144 TCGGG-T
1 TCGGGTT
4619150 TCGGG-T
1 TCGGGTT
4619156 TCGGGTT
1 TCGGGTT
* *
4619163 TAGGTTT
1 TCGGGTT
4619170 TCGGGTT
1 TCGGGTT
*
4619177 TAGGGTT
1 TCGGGTT
4619184 TCGGGTTT
1 TCGGG-TT
4619192 TCGGGTT
1 TCGGGTT
*
4619199 CTCGCGTT
1 -TCGGGTT
4619207 TCGGGTT
1 TCGGGTT
4619214 TC
1 TC
4619216 ATCTCTCTCC
Statistics
Matches: 6361, Mismatches: 532, Indels: 1678
0.74 0.06 0.20
Matches are distributed among these distances:
4 6 0.00
5 76 0.01
6 731 0.11
7 2736 0.43
8 1697 0.27
9 765 0.12
10 277 0.04
11 55 0.01
12 18 0.00
ACGTcount: A:0.07, C:0.13, G:0.41, T:0.40
Consensus pattern (7 bp):
TCGGGTT
Found at i:4616465 original size:17 final size:16
Alignment explanation
Indices: 4616071--4619213 Score: 423
Period size: 15 Copynumber: 201.9 Consensus size: 16
4616061 GGTTTGGGGT
4616071 TTCGGGTTTCGGG---
1 TTCGGGTTTCGGGTTA
4616084 TTCGGGTTTCGGGGTT-
1 TTCGGGTTTC-GGGTTA
* *
4616100 TCCGGGTTTCGGGCT-
1 TTCGGGTTTCGGGTTA
4616115 TTCGGGTCTTC-GG-T-
1 TTCGGGT-TTCGGGTTA
4616129 TTCGGGTTTCGGG--A
1 TTCGGGTTTCGGGTTA
4616143 TTCGGGTTTACAGGGTT-
1 TTCGGGTTT-C-GGGTTA
*
4616160 TTCGGGTTTCCGGTT-
1 TTCGGGTTTCGGGTTA
*
4616175 TTC-GGTGATC-GG-T-
1 TTCGGGT-TTCGGGTTA
*
4616188 TTAGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4616203 TACGGAGTTTCGGGTATA
1 TTCGG-GTTTCGGGT-TA
*
4616221 TTTACGGGTTT-GGGGT-
1 -TT-CGGGTTTCGGGTTA
4616237 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4616251 TTCGGGGTTTCGGGTT-
1 TTC-GGGTTTCGGGTTA
** *
4616267 CGCAGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4616281 TTCGGGTATATCGGGCTT-
1 TTCGGGT-T-TCGGG-TTA
*
4616299 TTCGGGTTT-TGG-T-
1 TTCGGGTTTCGGGTTA
*
4616312 GTCGGAGTCTTCGGG-T-
1 TTCGG-GT-TTCGGGTTA
4616328 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4616343 TTAGGGATTTCCGGGTT-
1 TTCGGG-TTT-CGGGTTA
4616360 TTCGGGTTTCAGGGTT-
1 TTCGGGTTTC-GGGTTA
4616376 TTCGGGTTTTTCGGG-T-
1 TTCGGG--TTTCGGGTTA
*
4616392 TTCTGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4616406 TTC-GGTTTCACGGG-GA
1 TTCGGGTTT--CGGGTTA
4616422 TTCGGGTTTCGGG-TA
1 TTCGGGTTTCGGGTTA
4616437 TTCGGG-TTCGGGTTA
1 TTCGGGTTTCGGGTTA
4616452 -TCGGGTTATTCGGG-T-
1 TTCGGG-T-TTCGGGTTA
*
4616467 TTCGGGTTGCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4616481 TGCGCGGTTTCGGGTT-
1 TTCG-GGTTTCGGGTTA
4616497 TTCGGGATTTCGGG-T-
1 TTCGGG-TTTCGGGTTA
* *
4616512 CTCGGGTTTGAGGGGTT-
1 TTCGGGTTT--CGGGTTA
4616529 TTCGGGTTTCGAGGTT-
1 TTCGGGTTTCG-GGTTA
* * *
4616545 CTCGGGTTCCGTG-T-
1 TTCGGGTTTCGGGTTA
*
4616559 TTC-GGTTGCGGG---
1 TTCGGGTTTCGGGTTA
*
4616571 TTCGGGGATTTCGGGAT-
1 TTC-GGG-TTTCGGGTTA
4616588 TTCGAGGTTTCGGG---
1 TTCG-GGTTTCGGGTTA
*
4616602 TTC-GGTTTCGGGTTTT
1 TTCGGGTTTCGGG-TTA
4616618 TTCGAGGTTTCGGG-T-
1 TTCG-GGTTTCGGGTTA
4616633 TTCAGGGTTTCCCGGGTT-
1 TTC-GGGTTT--CGGGTTA
*
4616651 TGCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4616665 TTGGGGTTTGCGGG---
1 TTCGGGTTT-CGGGTTA
4616679 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
**
4616694 TAAGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4616709 TCCGGGTTTCGAGG-T-
1 TTCGGGTTTCG-GGTTA
***
4616724 TTCGAGGTATTCAGGGAGG
1 TTCG-GGT-TTC-GGGTTA
*
4616743 TTCGGAGATTCGGG---
1 TTCGG-GTTTCGGGTTA
*
4616757 TTC-GGTTGCGGG-TA
1 TTCGGGTTTCGGGTTA
4616771 TATCGGAG-TTCGGGTT-
1 T-TCGG-GTTTCGGGTTA
*
4616787 TTCGGGTTTTTCGGG-TG
1 TTCGGG--TTTCGGGTTA
**
4616804 GCCGGGTTT-GGG-T-
1 TTCGGGTTTCGGGTTA
*
4616817 TTCGGGTTGCGGG-T-
1 TTCGGGTTTCGGGTTA
4616831 TTC-GGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4616844 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
* * *
4616859 TCCCGGTTTCCGG-T-
1 TTCGGGTTTCGGGTTA
4616873 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4616887 TTCGAGGTGTTAGGCGTT-
1 TTCG-GGT-TTCGG-GTTA
* *
4616905 TACGGGATGTCGGG-TA
1 TTCGGG-TTTCGGGTTA
4616921 TTTCGAGAGTTTCACGGG-T-
1 -TTCG-G-GTTT--CGGGTTA
4616940 TTCGGG-TTC-GG-T-
1 TTCGGGTTTCGGGTTA
*
4616952 TTCAGGGTTT-GTG-TA
1 TTC-GGGTTTCGGGTTA
4616967 TTCGGGTTTCGGAGTTGCA
1 TTCGGGTTTCGG-GTT--A
*
4616986 GGGTTCGGGTTTCTGG-T-
1 ---TTCGGGTTTCGGGTTA
4617003 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4617017 TTCGGGGTATTCGAGGTT-
1 TTC-GGGT-TTCG-GGTTA
*
4617035 TCCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4617049 TTCGGGTGTTCGGGTTG
1 TTCGGGT-TTCGGGTTA
4617066 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
4617081 TGTCCGGGTTTCGGG-T-
1 T-T-CGGGTTTCGGGTTA
*
4617097 TTCGGGTTTC-GGTTG
1 TTCGGGTTTCGGGTTA
* *
4617112 TCCCGGGTTTCGGTTTA
1 T-TCGGGTTTCGGGTTA
*
4617129 CCCGGTTATCGGGTTTCGCGGAT-
1 ------T-TCGGGTTTCG-GGTTA
4617152 TTCGGGCTTTC-GG-T-
1 TTCGGG-TTTCGGGTTA
4617166 TTCGGGTTTACGGAGTTGA
1 TTCGGGTTT-CGG-GTT-A
*
4617185 --CGGGTTTCGTGTT-
1 TTCGGGTTTCGGGTTA
**** *
4617198 TTCCCCGGGGGGGGGGTTTTTG
1 TT---CGGGTTTCGGG---TTA
4617220 TTCGGGTTT-GGG-T-
1 TTCGGGTTTCGGGTTA
4617233 TTC-GGTTTCGGGTTTA
1 TTCGGGTTTCGGG-TTA
4617249 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4617263 TTCGGGTTTTCCGAGGTT-
1 TTCGGG-TTT-CG-GGTTA
4617281 TTCCACGGGTTTCGGG-T-
1 TT---CGGGTTTCGGGTTA
4617298 TTCGGGGTGTTCGGG-T-
1 TTC-GGGT-TTCGGGTTA
4617314 TTC-GGTTTC-GGTT-
1 TTCGGGTTTCGGGTTA
4617327 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4617341 TTCGGGTTATCGGGTT-
1 TTCGGGTT-TCGGGTTA
* **
4617357 TACGGGTTGAGGGTT-
1 TTCGGGTTTCGGGTTA
4617372 TTCGGGTTTGTCAGGG---
1 TTCGGG-TT-TC-GGGTTA
4617388 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4617402 TCCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4617417 TCCGGGTTTTC-GG-TA
1 TTCGGG-TTTCGGGTTA
*
4617432 TTTGATCGGTTTACGGGTT-
1 TTCG---GGTTT-CGGGTTA
* *
4617451 TACGAGTTTACGGGTT-
1 TTCGGGTTT-CGGGTTA
4617467 TTCGGGATTTCGGG---
1 TTCGGG-TTTCGGGTTA
*
4617481 TTCAGGAGTTTCGGGCT-
1 TTC-GG-GTTTCGGGTTA
4617498 TTCAGGGTTTCGGGTT-
1 TTC-GGGTTTCGGGTTA
* *
4617514 TCCGAGTTTCAAGGG---
1 TTCGGGTTTC--GGGTTA
*
4617529 GTCAGGGTTTCAGGG-T-
1 TTC-GGGTTTC-GGGTTA
*
4617545 TTCGGGTGTTCGGGGT-
1 TTCGGGT-TTCGGGTTA
4617561 TTCGGGTTTACGGG---
1 TTCGGGTTT-CGGGTTA
4617575 TT-GGGTTTTCGGG-T-
1 TTCGGG-TTTCGGGTTA
4617589 TTCGGG-TTCGGGTT-
1 TTCGGGTTTCGGGTTA
4617603 TTCGCGGTTTCGGG-TA
1 TTCG-GGTTTCGGGTTA
*
4617619 TTC-GGTTTC-GGTCA
1 TTCGGGTTTCGGGTTA
* *
4617633 CTTTCTGGTTTCGGG-TG
1 --TTCGGGTTTCGGGTTA
*
4617650 TTCGGGTTTACGGAGAT-
1 TTCGGGTTT-CGG-GTTA
*
4617667 TTCGGGTATTTAGGGTT-
1 TTCGGG--TTTCGGGTTA
4617684 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4617698 TTCGGGTTTCGGGTTCA
1 TTCGGGTTTCGGGTT-A
* *
4617715 GGGTTTC-GGTGTCCGGGGGTA
1 ----TTCGGGT-TTC-GGGTTA
*
4617736 TTCGGAGTTATCCGAGTT-
1 TTCGG-GTT-T-CGGGTTA
4617754 TTC-GGTGTTCGGGTT-
1 TTCGGGT-TTCGGGTTA
4617769 TTCCGAGGTTTC-GGTT-
1 TT-CG-GGTTTCGGGTTA
*
4617785 TGCGGGTTTATCGGG-T-
1 TTCGGG-TT-TCGGGTTA
*
4617801 TTCGGGTTTCGGGAT-
1 TTCGGGTTTCGGGTTA
4617816 TTCAAGGGTTTCGAGG-T-
1 TTC--GGGTTTCG-GGTTA
*
4617833 TTCGGGTTCCGGG-T-
1 TTCGGGTTTCGGGTTA
4617847 TTCGGGATTTCCGGGTT-
1 TTCGGG-TTT-CGGGTTA
** *
4617864 TTCGGGATGACGGGAT-
1 TTCGGG-TTTCGGGTTA
4617880 TTCGGGTTTC-GG-T-
1 TTCGGGTTTCGGGTTA
*
4617893 TT-GGGTTTCGGG-TC
1 TTCGGGTTTCGGGTTA
4617907 TTCGGGTTTAATCGGGTTA
1 TTCGGG-TT--TCGGGTTA
4617926 TTCGGGTTTTC-GG-T-
1 TTCGGG-TTTCGGGTTA
4617940 TTCGGGTTTC-GG-TA
1 TTCGGGTTTCGGGTTA
* *
4617954 TTCGGAGTTTCGGTTTCTGGG
1 TTCGG-GTTTCGG-GT-T--A
4617975 TTCGGAGTTTCCGGGTT-
1 TTCGG-GTTT-CGGGTTA
*
4617992 TACGGGTTTCAAGGG-T-
1 TTCGGGTTTC--GGGTTA
* *
4618008 TGCGGGTTCCGAGAGTT-
1 TTCGGGTTTCG-G-GTTA
*
4618025 GTCGGGGTTTCGGG-TA
1 TTC-GGGTTTCGGGTTA
**
4618041 TTCGAGAAGTTGAGGGATT-
1 TTCG-G--GTTTCGGG-TTA
*
4618060 TACGGGTTTTC-GGTT-
1 TTCGGG-TTTCGGGTTA
*
4618075 TTCGGGTTTAGGGTT-
1 TTCGGGTTTCGGGTTA
4618090 TTCGGGTATTCGGG-T-
1 TTCGGGT-TTCGGGTTA
*
4618105 TTCGGGGATTGCGGG-TA
1 TTC-GGG-TTTCGGGTTA
4618122 TTCGGGTTTAC-GGTT-
1 TTCGGGTTT-CGGGTTA
4618137 TCTCGGGCTTTCGGGTT-
1 T-TCGGG-TTTCGGGTTA
*
4618154 TCCGGGTTTCGGGTTA
1 TTCGGGTTTCGGGTTA
4618170 TTCCGGG-TTCGGAG-T-
1 TT-CGGGTTTCGG-GTTA
4618185 TTCGGGTGTTTCGGG-T-
1 TTC-GG-GTTTCGGGTTA
*
4618201 TTCAGGGTTTCGGTTTCGGGA
1 TTC-GGGTTTCGGGTT----A
4618222 GTTCAGAGGTTTCGGGTTA
1 -TTC-G-GGTTTCGGGTTA
* *
4618241 ---GGGCTTGACGGGAT-
1 TTCGGG-TT-TCGGGTTA
4618255 TTCGGGTTTCGAGGTTA
1 TTCGGGTTTCG-GGTTA
*
4618272 -GCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618285 TTCGGAGTTTCGGGTT-
1 TTCGG-GTTTCGGGTTA
4618301 TTCGGGTTGTCGGG-T-
1 TTCGGGTT-TCGGGTTA
4618316 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618330 TTCAGGGTTTCGGGTTA
1 TTC-GGGTTTCGGGTTA
*
4618347 -TCGGGGTTACGGGTT-
1 TTC-GGGTTTCGGGTTA
*
4618362 TTCAGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4618377 TCCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
* * *
4618392 TACGGAGTTTGGGGCT-
1 TTCGG-GTTTCGGGTTA
4618408 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
**
4618422 TTC-GGTAGCGGG---
1 TTCGGGTTTCGGGTTA
4618434 TTCGGGTTTC-GGTT-
1 TTCGGGTTTCGGGTTA
*
4618448 TTCAGG-TTC-GG-T-
1 TTCGGGTTTCGGGTTA
4618460 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618474 TTCGGGTTTCCGGG---
1 TTCGGGTTT-CGGGTTA
4618488 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618502 TTCGGG-TTCGGGTT-
1 TTCGGGTTTCGGGTTA
**
4618516 TAAGGGTTTCGGGTTGA
1 TTCGGGTTTCGGGTT-A
** *
4618533 CCCGGGTTTCGGGTTT
1 TTCGGGTTTCGGGTTA
* *
4618549 TTCCGGGTTTCGGTTTCGGG
1 TT-CGGGTTTCGGGTT---A
*
4618569 TTTGGGTTTCCGGAGTT-
1 TTCGGGTTT-CGG-GTTA
4618586 TTCGGG-TTC-GGTTA
1 TTCGGGTTTCGGGTTA
*
4618600 TTCGAGTTTTCGGG---
1 TTCG-GGTTTCGGGTTA
4618614 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
*
4618629 GTCGGG-TTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618642 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618656 TTCGGGATTTCAGGG-T-
1 TTCGGG-TTTC-GGGTTA
4618672 TTCGGGTTTCAGGGATT-
1 TTCGGGTTTC-GGG-TTA
*
4618689 TCCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618703 TTCGGG-TTCGGG-T-
1 TTCGGGTTTCGGGTTA
4618716 TTCGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4618730 TTCGGGGTTC-GGTTA
1 TTCGGGTTTCGGGTTA
4618745 --CGGGTTTC-GGTT-
1 TTCGGGTTTCGGGTTA
*
4618757 TT-GGGTTT-GGG-TC
1 TTCGGGTTTCGGGTTA
4618770 TTCGGGTTTCGGAAAG-T-
1 TTCGGGTTTCGG---GTTA
4618787 TTCGAGGTTTCGGG---
1 TTCG-GGTTTCGGGTTA
4618801 TTCGGGTTTCGGGTT-
1 TTCGGGTTTCGGGTTA
* *
4618816 TAACGGGGTTCGGG-T-
1 T-TCGGGTTTCGGGTTA
4618831 TTCGAGGTGATTCGGG-T-
1 TTCG-GGT--TTCGGGTTA
4618848 TTCGGGTTTACGAGAG-T-
1 TTCGGGTTT-CG-G-GTTA
*
4618865 TTCAGGGTGTCGGGTTA
1 TTC-GGGTTTCGGGTTA
*
4618882 -TCAGGGTTTAAGGG-T-
1 TTC-GGGTTT-CGGGTTA
* * *
4618897 TTCTAGGTTTACGGGCTG
1 TTC-GGGTTT-CGGGTTA
*
4618915 TCCCGGGTTTCGCGG-T-
1 T-TCGGGTTTCG-GGTTA
4618931 TTCGGGTTTACAGGG-T-
1 TTCGGGTTT-C-GGGTTA
*
4618947 TTCGGAGTTT-GGATT-
1 TTCGG-GTTTCGGGTTA
* * *
4618962 TACGGGTATCGCGGGTA
1 TTCGGGTTTCG-GGTTA
*
4618979 TTCGGGTTTCGGGGT-
1 TTCGGGTTTCGGGTTA
4618994 TTCGGAGATTTTCGGGTTA
1 TTCGG-G--TTTCGGGTTA
* * *
4619013 TACCGAGTTTCAGGTTA
1 T-TCGGGTTTCGGGTTA
*
4619030 -GCGAGGTTTCGAGG-TA
1 TTCG-GGTTTCG-GGTTA
*
4619046 GTCGGGTATTCGGG-T-
1 TTCGGGT-TTCGGGTTA
*
4619061 TTAGGGTTTCGGG-T-
1 TTCGGGTTTCGGGTTA
*
4619075 TTCGGGTTTCGGGTTCGGT
1 TTCGGGTTTCGGGTT---A
*
4619094 TTCGGGTGTCGGGTT-
1 TTCGGGTTTCGGGTTA
4619109 TTCGCGGTTTC-GG-T-
1 TTCG-GGTTTCGGGTTA
4619123 TTCGGGTTTCGGG---
1 TTCGGGTTTCGGGTTA
*
4619136 TTCGGGTTTCGGGTTCGGG
1 TTCGGGTTTCGGGTT---A
*
4619155 TTCGGGTTT-AGGTT-
1 TTCGGGTTTCGGGTTA
*
4619169 TTCGGGTTTAGGG-T-
1 TTCGGGTTTCGGGTTA
4619183 TTCGGGTTTTCGGGTT-
1 TTCGGG-TTTCGGGTTA
* *
4619199 CTCGCGTTTCGGGTT
1 TTCGGGTTTCGGGTT
4619214 TCATCTCTCT
Statistics
Matches: 2487, Mismatches: 246, Indels: 792
0.71 0.07 0.22
Matches are distributed among these distances:
12 50 0.02
13 223 0.09
14 487 0.20
15 540 0.22
16 522 0.21
17 353 0.14
18 136 0.05
19 77 0.03
20 26 0.01
21 26 0.01
22 25 0.01
23 20 0.01
24 2 0.00
ACGTcount: A:0.06, C:0.15, G:0.40, T:0.39
Consensus pattern (16 bp):
TTCGGGTTTCGGGTTA
Found at i:4616635 original size:25 final size:25
Alignment explanation
Indices: 4616605--4616727 Score: 90
Period size: 22 Copynumber: 5.3 Consensus size: 25
4616595 TTTCGGGTTC
**
4616605 GGTTTCGGGTTTTTTCGAGGTTT-CG
1 GGTTTCGGGTTTTCCCG-GGTTTGCG
4616630 GGTTTCAGGG-TTTCCCGGGTTTGCG
1 GGTTTC-GGGTTTTCCCGGGTTTGCG
*
4616655 GGTTTCGGG-TTT--GGGGTTTGCG
1 GGTTTCGGGTTTTCCCGGGTTTGCG
**
4616677 GG-TTCGGG-TTT--CGGGTTTAAG
1 GGTTTCGGGTTTTCCCGGGTTTGCG
4616698 GGTTTCGGG-TTT-CCGGGTTT-CG
1 GGTTTCGGGTTTTCCCGGGTTTGCG
4616720 AGGTTTCG
1 -GGTTTCG
4616728 AGGTATTCAG
Statistics
Matches: 86, Mismatches: 7, Indels: 12
0.82 0.07 0.11
Matches are distributed among these distances:
21 18 0.21
22 21 0.24
23 14 0.16
24 11 0.13
25 19 0.22
26 3 0.03
ACGTcount: A:0.04, C:0.14, G:0.41, T:0.41
Consensus pattern (25 bp):
GGTTTCGGGTTTTCCCGGGTTTGCG
Found at i:4617090 original size:130 final size:135
Alignment explanation
Indices: 4616820--4617163 Score: 322
Period size: 137 Copynumber: 2.5 Consensus size: 135
4616810 TTTGGGTTTC
* *
4616820 GGGTTGCGGGTTTC-GGTTTCGGGTTTCGGGTTTCGGGTTTCCCGGTTTCCGGTTTCGGGTTTCG
1 GGGTTTCGGGTTTCGGGTTTCGGGTTGCGGGTTTCGGGTTTCCCGGTTTCCGGTTTCGGGTTTCG
*
4616884 GGTTTCGAGGTGTTAGGCGTTTACGGGATGTCGGGTATTTCGAGAGTTTCACGGGTTTCGGGTTC
66 GGTTTCGAGGTGTTAGGCGTTTACGGGATGTCGGGTAGTTCGAGAGTTTCACGGGTTTCGGGTT-
*
4616949 GGTTTCA
130 -GTGTCA
* * *
4616956 GGGTTT-GTGTATTCGGGTTTCGGAGTTGCAGGG-TTCGGGTTT-CTGGTTTCGGGTTTCGGGTT
1 GGGTTTCGGGT-TTCGGGTTTCGG-GTTGC-GGGTTTCGGGTTTCCCGGTTTCCGGTTTCGGGTT
* * *
4617018 TCGGGGTATTCGAGGT-TTCCGG-GTTT-CGGG-TTTCGGGT-GTTCG-G-GTTGT-TCGGGTTT
63 TC-GGGT-TTCGAGGTGTT-AGGCGTTTACGGGATGTCGGGTAGTTCGAGAGTT-TCACGGGTTT
*
4617075 CGGGTT-TGTCC
124 CGGGTTGTGTCA
*
4617086 GGGTTTCGGGTTTCGGGTTTC-GGTTGTCCCGGGTTTC-GGTTTACCCGGTTATCGGGTTTCGCG
1 GGGTTTCGGGTTTCGGGTTTCGGGTTG---CGGGTTTCGGGTTT-CCCGGTT-TCCGGTTTCG-G
4617149 GATTTCGGGCTTTCG
60 G-TTTCGGG-TTTCG
4617164 GTTTCGGGTT
Statistics
Matches: 176, Mismatches: 13, Indels: 40
0.77 0.06 0.17
Matches are distributed among these distances:
128 4 0.02
129 1 0.01
130 27 0.15
131 7 0.04
132 5 0.03
133 26 0.15
134 11 0.06
135 12 0.07
136 15 0.09
137 32 0.18
138 23 0.13
139 13 0.07
ACGTcount: A:0.05, C:0.16, G:0.40, T:0.39
Consensus pattern (135 bp):
GGGTTTCGGGTTTCGGGTTTCGGGTTGCGGGTTTCGGGTTTCCCGGTTTCCGGTTTCGGGTTTCG
GGTTTCGAGGTGTTAGGCGTTTACGGGATGTCGGGTAGTTCGAGAGTTTCACGGGTTTCGGGTTG
TGTCA
Found at i:4618460 original size:19 final size:20
Alignment explanation
Indices: 4616071--4619213 Score: 425
Period size: 23 Copynumber: 141.1 Consensus size: 20
4616061 GGTTTGGGGT
*
4616071 TTCGGGTTTCGGG-TTCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4616090 TTTCGGGGTTTCCGGGTTTCGGG
1 -TTC-GGGTTT-CGGGTTTCAGG
*
4616113 CTTTCGGGTCTTC-GGTTTCGGG
1 --TTCGGGT-TTCGGGTTTCAGG
*
4616135 TTTCGGGATTCGGGTTTACAGGG
1 -TTCGGGTTTCGGGTTT-CA-GG
*
4616158 TTTTCGGGTTTCCGGTTTTC-GG
1 --TTCGGGTTT-CGGGTTTCAGG
* *
4616180 TGATC-GGTTTAGGGTTTCGGG
1 T--TCGGGTTTCGGGTTTCAGG
* *
4616201 TTTACGGAGTTTCGGGTAT-A-T
1 -TT-CGG-GTTTCGGGTTTCAGG
* *
4616222 TTACGGGTTTGGGGTTTCGGG
1 TT-CGGGTTTCGGGTTTCAGG
*
4616243 TTTCGGGTTTCGGGGTTTCGGG
1 -TTCGGGTTTC-GGGTTTCAGG
*
4616265 TTCGCAGGTTTCGGGTTTCGGG
1 TTCG--GGTTTCGGGTTTCAGG
*
4616287 TATATCGGGCTTTTCGGGTTT-TGG
1 --T-TCGGG--TTTCGGGTTTCAGG
*
4616311 TGTCGGAGTCTTCGGGTTTCGGG
1 T-TCGG-GT-TTCGGGTTTCAGG
*
4616334 TTTCGGGTTTTAGGGATTTC---
1 -TTCGGG-TTTCGGG-TTTCAGG
4616354 --CGGGTTTTCGGGTTTCAGGG
1 TTCGGG-TTTCGGGTTTCA-GG
*
4616374 TTTTCGGGTTTTTCGGGTTTCTGG
1 --TTCGGG--TTTCGGGTTTCAGG
4616398 TTTCGGGTTTC-GGTTTCACGGGG
1 -TTCGGGTTTCGGGTTTCA---GG
*
4616421 ATTCGGGTTTCGGGTATTCGGG
1 -TTCGGGTTTCGGGT-TTCAGG
4616443 TTCGGGTTATCGGG-TT-A--
1 TTCGGGTT-TCGGGTTTCAGG
* *
4616460 TTCGGGTTTCGGGTTGCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4616480 TTGCGCGGTTTCGGGTTTTCGGG
1 TT-CG-GGTTTCGGG-TTTCAGG
* *
4616503 ATTTCGGGTCTCGGGTTTGAGG
1 --TTCGGGTTTCGGGTTTCAGG
*
4616525 ---GGTTTTCGGGTTTCGAGG
1 TTCGGGTTTCGGGTTTC-AGG
* *
4616543 TTCTCGGGTTCCGTGTTTC-GG
1 -T-TCGGGTTTCGGGTTTCAGG
*
4616564 TTGCGGG-TTCGGGGATTTCGGG
1 TT-CGGGTTTC-GGG-TTTCAGG
4616586 ATTTCGAGGTTTCGGG-TTC-GG
1 --TTCG-GGTTTCGGGTTTCAGG
*
4616607 TTTCGGGTTTTTTCGAGGTTTCGGG
1 -TTCGGG---TTTCG-GGTTTCAGG
*
4616632 TTTCAGGGTTTCCCGGGTTTGCGGG
1 -TTC-GGGTTT--CGGGTTT-CAGG
* *
4616657 TTTCGGGTTTGGGGTTTGCGGG
1 -TTCGGGTTTCGGGTTT-CAGG
*
4616679 TTCGGGTTTCGGGTTTAAGGG
1 TTCGGGTTTCGGGTTTCA-GG
4616700 TTTCGGGTTTCCGGGTTTCGAGG
1 -TTCGGGTTT-CGGGTTTC-AGG
4616723 TTTCGAGGTATTCAGGG----AGG
1 -TTCG-GGT-TTC-GGGTTTCAGG
*
4616743 TTCGGAGATTCGGG-TTC-GG
1 TTCGG-GTTTCGGGTTTCAGG
*
4616762 TTGCGGGTATATCGGAG-TTCGGG
1 TT-CGGGT-T-TCGG-GTTTCAGG
** *
4616785 TTTTCGGGTTTTTCGGGTGGCCGGG
1 --TTCGGG--TTTCGGGT-TTCAGG
* * *
4616810 TTTGGGTTTCGGGTTGCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4616830 TTTC-GGTTTCGGGTTTCGGG
1 -TTCGGGTTTCGGGTTTCAGG
* *
4616850 TTTCGGGTTTCCCGGTTTCCGG
1 -TTCGGGTTT-CGGGTTTCAGG
4616872 TTTCGGGTTTCGGGTTTCGAGGTG
1 -TTCGGGTTTCGGGTTTC-A-G-G
* * *
4616896 TTAGGCGTTTACGGGATGTCGGG
1 TTCGG-GTTT-CGGG-TTTCAGG
*
4616919 TATTTCGAGAGTTTCACGGGTTTCGGG
1 ---TTCG-G-GTTT--CGGGTTTCAGG
** *
4616946 TTC-GGTTTCAGGGTTTGTGTA
1 TTCGGGTTTC-GGGTTTCAG-G
*
4616967 TTCGGGTTTCGGAGTTGCAGGG
1 TTCGGGTTTCGG-GTTTCA-GG
* *
4616989 TTCGGGTTTCTGGTTTCGGG
1 TTCGGGTTTCGGGTTTCAGG
4617009 TTTCGGGTTTCGGGGTATTCGAGG
1 -TTCGGGTTTC-GGGT-TTC-AGG
*
4617033 TTTCCGGGTTTCGGGTTTCGGGTG
1 -TT-CGGGTTTCGGGTTTC-AG-G
*
4617057 TTCGGGTTGTTCGGGTTTCGGG
1 TTCGGG-T-TTCGGGTTTCAGG
*
4617079 TTTGTCCGGGTTTCGGGTTTCGGG
1 --T-T-CGGGTTTCGGGTTTCAGG
4617103 TTTC-GGTTGTCCCGGGTTTC-GG
1 -TTCGGGTT-T--CGGGTTTCAGG
*
4617125 TTTACCCGGTTATCGGGTTTC--G
1 -TT--CGGGTT-TCGGGTTTCAGG
*
4617147 --CGGATTTCGGGCTTTC-GG
1 TTCGGGTTTCGGG-TTTCAGG
* *
4617165 TTTCGGGTTTACGGAGTTGACGGG
1 -TTCGGGTTT-CGG-GTT-TCAGG
* *****
4617189 TTTCGTGTTTTCCCCGGGGGGGGGG
1 -TTCG-GGTTT---CGGGTTTCAGG
*** *
4617214 TTTTTG-TTCGGGTTT-GGG
1 TTCGGGTTTCGGGTTTCAGG
4617232 TTTC-GGTTTCGGGTTT-A--
1 -TTCGGGTTTCGGGTTTCAGG
*
4617249 TTCGGGTTTCGGGTTTCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4617269 TTTTCCGAGGTTTTCCACGGGTTTCGGG
1 --TT-CG-GG-TTT---CGGGTTTCAGG
4617297 TTTCGGGGTGTTCGGGTTTC-GG
1 -TTC-GGGT-TTCGGGTTTCAGG
* *
4617319 TTTCGGTTTTCGGGTTTCGGG
1 -TTCGGGTTTCGGGTTTCAGG
*
4617340 TTTCGGGTTATCGGGTTTACGGG
1 -TTCGGGTT-TCGGGTTT-CAGG
*
4617363 TTGAGGGTTTTCGGGTTTGTCAGGG
1 TT-CGGG-TTTCGGG-TT-TCA-GG
* *
4617388 TTCGGGTTTCGGGTTCCGGG
1 TTCGGGTTTCGGGTTTCAGG
4617408 TTTCGGGTTTCCGGGTTTTC-GG
1 -TTCGGGTTT-CGGG-TTTCAGG
* *
4617430 TATTTGATCGGTTTACGGGTTTACGAGT
1 --TTCG---GGTTT-CGGGTTT-C-AGG
*
4617458 TTACGGGTTTTCGGGATTTCGGG
1 TT-CGGG-TTTCGGG-TTTCAGG
4617481 TTCAGGAGTTTCGGGCTTTCAGGG
1 TTC-GG-GTTTCGGG-TTTCA-GG
*
4617505 TTTCGGGTTTCCGAGTTTCAAGGG
1 -TTCGGGTTT-CGGGTTTC-A-GG
* *
4617529 GTCAGGGTTTCAGGGTTTCGGGTG
1 TTC-GGGTTTC-GGGTTTC-AG-G
*
4617553 TTCGGGGTTTCGGGTTTACGGG
1 TTC-GGGTTTCGGGTTT-CAGG
*
4617575 TT-GGGTTTTCGGGTTTCGGG
1 TTCGGG-TTTCGGGTTTCAGG
*
4617595 TTCGGGTTTTCGCGGTTTCGGG
1 TTCGGG-TTTCG-GGTTTCAGG
**
4617617 TATTC-GGTTTC-GG--TCACT
1 --TTCGGGTTTCGGGTTTCAGG
* *
4617635 TTCTGGTTTCGGGTGTTCGGG
1 TTCGGGTTTCGGGT-TTCAGG
*
4617656 TTTACGGAGATTTCGGGTATTTAGGG
1 -TT-CGG-G-TTTCGGGT-TTCA-GG
*
4617682 TTTTCGGGTTTCGGGTTTCGGG
1 --TTCGGGTTTCGGGTTTCAGG
4617704 TTTCGGG-TTCAGGGTTTC-GG
1 -TTCGGGTTTC-GGGTTTCAGG
*
4617724 TGTCCGGGGGTATTCGGAGTTATCCGAGTT
1 T-T-C--GGGT-TTCGG-GTT-T-C-AG-G
4617754 TTC-GGTGTTCGGGTTTTCCGAGG
1 TTCGGGT-TTCGGG-TTT-C-AGG
*
4617777 TTTC-GGTTTGCGGGTTTATCGGG
1 -TTCGGGTTT-CGGG-TT-TCAGG
4617800 TTTCGGGTTTCGGGATTTCAAGGG
1 -TTCGGGTTTCGGG-TTTC-A-GG
* *
4617824 TTTCGAGGTTTCGGGTTCCGGG
1 -TTCG-GGTTTCGGGTTTCAGG
*
4617846 TTTCGGGATTTCCGGGTTTTCGGG
1 -TTCGGG-TTT-CGGG-TTTCAGG
*
4617870 ATGACGGGATTTCGGGTTTC-GG
1 -T-TCGGG-TTTCGGGTTTCAGG
* *
4617892 TTTGGGTTTCGGGTCTTCGGG
1 TTCGGGTTTCGGGT-TTCAGG
4617913 TTTAATCGGGTTATTCGGGTTTTC-GG
1 --T--TCGGG-T-TTCGGG-TTTCAGG
*
4617939 TTTCGGGTTTC-GGTATTCGGAGT
1 -TTCGGGTTTCGGGT-TTC--AGG
*
4617962 TTC-GGTTTCTGGG-TTCGGAGT
1 TTCGGGTTTC-GGGTTTC--AGG
4617983 TTCCGGGTTTACGGGTTTCAAGGG
1 TT-CGGGTTT-CGGGTTTC-A-GG
* *
4618007 TTGCGGGTTCCGAGAGTTGTCGGGG
1 TT-CGGGTTTCG-G-GTT-TC-AGG
*
4618032 TTTCGGGTATTCGAGAAG-TTGAGGG
1 -TTCGGGT-TTCG-G--GTTTCA-GG
* *
4618057 ATTTACGGGTTTTCGGTTTTCGGG
1 --TT-CGGG-TTTCGGGTTTCAGG
* *
4618081 TTTAGGGTTTTCGGGTATTCGGG
1 -TTCGGG-TTTCGGGT-TTCAGG
* *
4618104 TTTCGGGGATTGCGGGTATTCGGG
1 -TTC-GGG-TTTCGGGT-TTCAGG
* *
4618128 TTTACGGTTTCTCGGGCTTTCGGG
1 -TT-CGGGTT-TCGGG-TTTCAGG
*
4618152 TTTCCGGGTTTCGGGTTATTCCGGG
1 -TT-CGGGTTTCGGG-T-TT-CAGG
*
4618177 TTCGGAGTTTCGGGTGTTTCGGG
1 TTCGG-GTTTC-GG-GTTTCAGG
*
4618200 TTTCAGGGTTTC-GGTTTCGGGAG
1 -TTC-GGGTTTCGGGTTTC-AG-G
4618223 TTCAGAGGTTTCGGG-TT-AGGG
1 TTC-G-GGTTTCGGGTTTCA-GG
4618244 CTTGACGGGATTTCGGGTTTCGAGG
1 -TT--CGGG-TTTCGGGTTTC-AGG
*
4618269 TTAGCGGGTTTCGGGTTTCGGAGT
1 TT--CGGGTTTCGGGTTTC--AGG
*
4618293 TTCGGGTTTTCGGGTTGTCGGG
1 TTCGGG-TTTCGGGTT-TCAGG
4618315 TTTCGGGTTTCGGGTTTCAGGG
1 -TTCGGGTTTCGGGTTTCA-GG
* *
4618337 TTTCGGGTTATCGGGGTTACGGG
1 -TTCGGGTT-TC-GGGTTTCAGG
* *
4618360 TTTTCAGGTTTCGGGTTTCCGGG
1 --TTCGGGTTTCGGGTTT-CAGG
**
4618383 TTTCGGGTTTACGGAGTTTGGGG
1 -TTCGGGTTT-CGG-GTTTCAGG
4618406 CTTTCGGGTTTCGGGTTTC-GG
1 --TTCGGGTTTCGGGTTTCAGG
*
4618427 TAGCGGG-TTCGGGTTTC-GG
1 T-TCGGGTTTCGGGTTTCAGG
* *
4618446 TTTTCAGG-TTC-GGTTTCGGG
1 --TTCGGGTTTCGGGTTTCAGG
*
4618466 TTTCGGGTTTCGGGTTTCCGGG
1 -TTCGGGTTTCGGGTTT-CAGG
*
4618488 TTCGGGTTTCGGGTTTCGGG
1 TTCGGGTTTCGGGTTTCAGG
* *
4618508 TTCGGGTTTAAGGGTTTCGGG
1 TTCGGGTTT-CGGGTTTCAGG
4618529 TTGACCCGGGTTTCGGGTTT----
1 TT----CGGGTTTCGGGTTTCAGG
*
4618549 TTCCGGGTTTC-GGTTTCGGG
1 TT-CGGGTTTCGGGTTTCAGG
* *
4618569 TTTGGGTTTCCGGAGTTTTCGGG
1 TTCGGGTTT-CGG-G-TTTCAGG
* * *
4618592 TTCGGTTATTCGAGTTTTCGGG
1 TTCGGGT-TTCG-GGTTTCAGG
*
4618614 TTCGGGTTTCGGGTTGTCGGG
1 TTCGGGTTTCGGGTT-TCAGG
*
4618635 TTCGGGTTTCGGGTTTCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4618655 TTTCGGGATTTCAGGGTTTCGGG
1 -TTCGGG-TTTC-GGGTTTCAGG
*
4618678 TTTCAGGGATTTCCGGGTTTCGGG
1 -TTC-GGG-TTT-CGGGTTTCAGG
*
4618702 TTTCGGG-TTCGGGTTTCGGG
1 -TTCGGGTTTCGGGTTTCAGG
*
4618722 TTTCGGGTTTCGGGGTTC-GG
1 -TTCGGGTTTCGGGTTTCAGG
**
4618742 TTACGGGTTTC-GGTTTTGGG
1 TT-CGGGTTTCGGGTTTCAGG
*
4618762 TTTGGGTCTTCGGGTTTC-GG
1 TTCGGGT-TTCGGGTTTCAGG
*** *
4618782 --AAAGTTTCGAGGTTTCGGG
1 TTCGGGTTTCG-GGTTTCAGG
*
4618801 TTCGGGTTTCGGGTTTAACGGGG
1 TTCGGGTTTCGGGTTT--C-AGG
*
4618824 TTCGGGTTTCGAGGTGATTCGGG
1 TTCGGGTTTCG-GGT--TTCAGG
4618847 TTTCGGGTTTACGAGAGTTTCAGGG
1 -TTCGGGTTT-CG-G-GTTTCA-GG
*
4618872 TGTCGGGTTATCAGGGTTTAAGGG
1 T-TCGGGTT-TC-GGGTTTCA-GG
* * *
4618896 TTTCTAGGTTTACGGGCTGTCCCGGG
1 -TTC-GGGTTT-CGGG-T-T-TCAGG
4618922 TTTCGCGGTTTCGGGTTTACAGGG
1 -TTCG-GGTTTCGGGTTT-CA-GG
* *
4618946 TTTCGGAGTTT-GGATTTACGGG
1 -TTCGG-GTTTCGGGTTT-CAGG
*
4618968 TATCGCGGGTATTCGGGTTTCGGGG
1 T-T--CGGGT-TTCGGGTTTC-AGG
*
4618993 TTTCGGAGATTTTCGGGTTATACCGAGT
1 -TTCGG-G--TTTCGGGTT-T--C-AGG
* *
4619021 TTCAGGTTAGCGAGGTTTCGAGG
1 TTCGGGTT-TCG-GGTTTC-AGG
4619044 TAGTCGGGTATTCGGGTTT-AGGG
1 T--TCGGGT-TTCGGGTTTCA-GG
*
4619067 TTTCGGGTTTCGGGTTTCGGG
1 -TTCGGGTTTCGGGTTTCAGG
* *
4619088 TTC-GGTTTCGGGTGTCGGG
1 TTCGGGTTTCGGGTTTCAGG
*
4619107 TTTTCGCGGTTTC-GGTTTCGGG
1 --TTCG-GGTTTCGGGTTTCAGG
*
4619129 TTTCGGG-TTCGGGTTTCGGG
1 -TTCGGGTTTCGGGTTTCAGG
4619149 TTCGGG-TTCGGGTTT-AGG
1 TTCGGGTTTCGGGTTTCAGG
* *
4619167 TTTTCGGGTTTAGGGTTTCGGG
1 --TTCGGGTTTCGGGTTTCAGG
* *
4619189 TTTTCGGGTTCTCGCGTTTCGGG
1 --TTCGGGTT-TCGGGTTTCAGG
4619212 TT
1 TT
4619214 TCATCTCTCT
Statistics
Matches: 2489, Mismatches: 235, Indels: 797
0.71 0.07 0.23
Matches are distributed among these distances:
16 25 0.01
17 73 0.03
18 26 0.01
19 126 0.05
20 228 0.09
21 344 0.14
22 365 0.15
23 452 0.18
24 440 0.18
25 254 0.10
26 84 0.03
27 46 0.02
28 23 0.01
29 2 0.00
30 1 0.00
ACGTcount: A:0.06, C:0.15, G:0.40, T:0.39
Consensus pattern (20 bp):
TTCGGGTTTCGGGTTTCAGG
Found at i:4619343 original size:22 final size:22
Alignment explanation
Indices: 4619300--4619364 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
4619290 CCCTAACCCT
4619300 CCACCCCCCCC-CGCACCC-CTCC
1 CCACCCCCCCCTC-C-CCCACTCC
4619322 CCACCCCCCCCTCCCCCACTCC
1 CCACCCCCCCCTCCCCCACTCC
* *
4619344 CC-CTCCCACCCTCCACCACTC
1 CCAC-CCCCCCCTCCCCCACTC
4619365 AACACGCCTA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
21 4 0.11
22 33 0.87
23 1 0.03
ACGTcount: A:0.11, C:0.78, G:0.02, T:0.09
Consensus pattern (22 bp):
CCACCCCCCCCTCCCCCACTCC
Found at i:4619357 original size:14 final size:14
Alignment explanation
Indices: 4619315--4619357 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
4619305 CCCCCCCGCA
4619315 CCCCTCCCCACCC-C
1 CCCCT-CCCACCCTC
4619329 CCCCTCCC-CCACTC
1 CCCCTCCCACC-CTC
4619343 CCCCTCCCACCCTC
1 CCCCTCCCACCCTC
4619357 C
1 C
4619358 ACCACTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
12 2 0.08
13 4 0.15
14 18 0.69
15 2 0.08
ACGTcount: A:0.07, C:0.81, G:0.00, T:0.12
Consensus pattern (14 bp):
CCCCTCCCACCCTC
Found at i:4619395 original size:21 final size:21
Alignment explanation
Indices: 4619371--4619485 Score: 112
Period size: 21 Copynumber: 5.5 Consensus size: 21
4619361 ACTCAACACG
4619371 CCTACCCCCTAAACCCTCACC
1 CCTACCCCCTAAACCCTCACC
**
4619392 CCTAAACCCTAAAACCC-CA-C
1 CCTACCCCCT-AAACCCTCACC
4619412 CCTACCCCCTAAACCCTCAACC
1 CCTACCCCCTAAACCCTC-ACC
* ** *
4619434 CC-CCCCCCTCCACCCTCCCC
1 CCTACCCCCTAAACCCTCACC
4619454 CCTACCCCCT-AACCCTCACCC
1 CCTACCCCCTAAACCCTCA-CC
4619475 CCTACCACCCT
1 CCTACC-CCCT
4619486 CCCCCCTACA
Statistics
Matches: 76, Mismatches: 11, Indels: 13
0.76 0.11 0.13
Matches are distributed among these distances:
19 6 0.08
20 20 0.26
21 37 0.49
22 13 0.17
ACGTcount: A:0.23, C:0.64, G:0.00, T:0.13
Consensus pattern (21 bp):
CCTACCCCCTAAACCCTCACC
Found at i:4619463 original size:14 final size:14
Alignment explanation
Indices: 4619437--4619500 Score: 58
Period size: 14 Copynumber: 4.5 Consensus size: 14
4619427 CTCAACCCCC
* *
4619437 CCCCCTCCACCCTC
1 CCCCCTCCCCCCTA
*
4619451 CCCCCTACCCCCTA
1 CCCCCTCCCCCCTA
*
4619465 -ACCCTCACCCCCTA
1 CCCCCTC-CCCCCTA
4619479 CCACCCTCCCCCCTA
1 CC-CCCTCCCCCCTA
*
4619494 CACCCTC
1 CCCCCTC
4619501 AAACCCTACA
Statistics
Matches: 40, Mismatches: 7, Indels: 6
0.75 0.13 0.11
Matches are distributed among these distances:
13 4 0.10
14 23 0.57
15 8 0.20
16 5 0.12
ACGTcount: A:0.14, C:0.72, G:0.00, T:0.14
Consensus pattern (14 bp):
CCCCCTCCCCCCTA
Found at i:4619468 original size:8 final size:7
Alignment explanation
Indices: 4619411--4619499 Score: 51
Period size: 7 Copynumber: 12.6 Consensus size: 7
4619401 TAAAACCCCA
4619411 CCCTACC
1 CCCTACC
4619418 CCCTAAACC
1 CCCT--ACC
* *
4619427 CTCAACC
1 CCCTACC
4619434 CCC--CC
1 CCCTACC
4619439 CCCT-CC
1 CCCTACC
*
4619445 ACCCTCCC
1 -CCCTACC
4619453 CCCTACC
1 CCCTACC
*
4619460 CCCTA-A
1 CCCTACC
4619466 CCCTCACC
1 CCCT-ACC
4619474 CCCTACC
1 CCCTACC
*
4619481 ACCCTCCC
1 -CCCTACC
*
4619489 CCCTACA
1 CCCTACC
4619496 CCCT
1 CCCT
4619500 CAAACCCTAC
Statistics
Matches: 65, Mismatches: 9, Indels: 16
0.72 0.10 0.18
Matches are distributed among these distances:
5 5 0.08
6 6 0.09
7 37 0.57
8 12 0.18
9 5 0.08
ACGTcount: A:0.17, C:0.70, G:0.00, T:0.13
Consensus pattern (7 bp):
CCCTACC
Found at i:4619645 original size:25 final size:22
Alignment explanation
Indices: 4619593--4619657 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 22
4619583 TCCCCCCGCT
*
4619593 ACCACCCTACCCCCTACCCCTAC
1 ACCACCCTA-CCCCTACCCCCAC
*
4619616 ACCACACCCTCACCCCTACCCCCCC
1 A-C-CACCCT-ACCCCTACCCCCAC
*
4619641 TCCACCCTACCCCTACC
1 ACCACCCTACCCCTACC
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
22 9 0.25
23 7 0.19
24 2 0.06
25 17 0.47
26 1 0.03
ACGTcount: A:0.20, C:0.68, G:0.00, T:0.12
Consensus pattern (22 bp):
ACCACCCTACCCCTACCCCCAC
Done.