Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold480
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 956445
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
File 5 of 7
Found at i:661257 original size:69 final size:68
Alignment explanation
Indices: 661142--661629 Score: 467
Period size: 61 Copynumber: 7.5 Consensus size: 68
661132 TCTCTTTCCA
* *
661142 AAGTCCACAACTCTGTGGCATCTTTTTCCTTTTTAAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAGTCCACAACTCTGTGGCATCTTTTACCCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCC
661207 TTCT
65 TTCT
* *
661211 AAGCCCACAACTCTGTGGCACTCTTTTACCCGTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
1 AAGTCCACAACTCTGTGGCA-TCTTTTACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCC
661276 TTCT
65 TTCT
*
661280 AAGTCCACAACTCTGTGG---C----ACCCTTTTAAGCCCACAACTCCATGGCACTCTTTTTCCT
1 AAGTCCACAACTCTGTGGCATCTTTTACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
661338 TCT
66 TCT
*
661341 AAGTCCACAACTCCGTGG---C----ACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
1 AAGTCCACAACTCTGTGGCATCTTTTACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
661399 TCT
66 TCT
*
661402 AAGTCCACAACTCTGTGG---C----ACCCTTTTAAAGCCCACAACTCCGTGGCACTCTTTTCCC
1 AAGTCCACAACTCTGTGGCATCTTTTACCCTTTT-AAGCCCACAACTCCGTGGCACTCTTTT-TC
*
661460 CTTTT
64 CTTCT
* * * * *** * *
661465 AAAGTCCACAACCCCGTGGCACCTTGTT--CC-TTTAAGTCCGGGACTCCATGGCAC-CTTCTT-
1 -AAGTCCACAACTCTGTGGCATCTT-TTACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTC
*
661525 -TTCA
64 CTTCT
* * * * *
661529 AAGTCCACAACTCCGTGGCACTCTTTTTCCCTTTTAAAGTCCACAACTTCGTGGCAC-CTTGTTC
1 AAGTCCACAACTCTGTGGCA-TCTTTTACCCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTC
*
661593 CTTTT
64 CTTCT
*
661598 AAGTCCACAACT-TCGTGGCATCTTTCACCCTT
1 AAGTCCACAACTCT-GTGGCATCTTTTACCCTT
661630 CTCAAAGCCC
Statistics
Matches: 363, Mismatches: 36, Indels: 41
0.82 0.08 0.09
Matches are distributed among these distances:
61 125 0.34
62 27 0.07
63 26 0.07
64 21 0.06
65 3 0.01
66 3 0.01
67 26 0.07
68 26 0.07
69 93 0.26
70 13 0.04
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (68 bp):
AAGTCCACAACTCTGTGGCATCTTTTACCCTTTTAAGCCCACAACTCCGTGGCACTCTTTTTCCT
TCT
Found at i:661309 original size:27 final size:27
Alignment explanation
Indices: 661274--661456 Score: 141
Period size: 27 Copynumber: 6.2 Consensus size: 27
661264 CACTCTTTTT
* * *
661274 CCTTCTAAGTCCACAACTCTGTGGCAC
1 CCTTTTAAGCCCACAACTCCGTGGCAC
*
661301 CCTTTTAAGCCCACAACTCCATGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
* *
661330 TTTTTCCTTCTAAGTCCACAACTCCGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
661362 CCTTTTAAGCCCACAACTCCGTGGCACTC
1 CCTTTTAAGCCCACAACTCCGTGGCA--C
* * *
661391 TTTTTCCTTCTAAGTCCACAACTCTGTGGCAC
1 -----CCTTTTAAGCCCACAACTCCGTGGCAC
661423 CCTTTTAAAGCCCACAACTCCGTGGCAC
1 CCTTTT-AAGCCCACAACTCCGTGGCAC
*
661451 TCTTTT
1 CCTTTT
661457 CCCCTTTTAA
Statistics
Matches: 125, Mismatches: 16, Indels: 29
0.74 0.09 0.17
Matches are distributed among these distances:
27 51 0.41
28 24 0.19
29 2 0.02
32 2 0.02
34 46 0.37
ACGTcount: A:0.21, C:0.37, G:0.13, T:0.30
Consensus pattern (27 bp):
CCTTTTAAGCCCACAACTCCGTGGCAC
Found at i:661553 original size:99 final size:96
Alignment explanation
Indices: 661361--661609 Score: 338
Period size: 99 Copynumber: 2.5 Consensus size: 96
661351 CTCCGTGGCA
* * **
661361 CCCTTTT-AAGCCCACAACTCCGTGGCACTCTTTTTCCTTCTAAGTCCACAACTCTGTGGCACCC
1 CCCTTTTAAAGTCCACAACTCCGTGGCAC-CTTGTTCCTT-TAAGTCCACAACTCCATGGCACCC
661425 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
64 TTTTAAAGCCCACAACTCCGTGGCACTCTTTTC
* ***
661458 CCCTTTTAAAGTCCACAACCCCGTGGCACCTTGTTCCTTTAAGTCCGGGACTCCATGGCACCTTC
1 CCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAGTCCACAACTCCATGGCACC--C
* *
661523 TTTTCAAAGTCCACAACTCCGTGGCACTCTTTTT
64 TTTT-AAAGCCCACAACTCCGTGGCACTCTTTTC
*
661557 CCCTTTTAAAGTCCACAACTTCGTGGCACCTTGTTCCTTTTAAGTCCACAACT
1 CCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCC-TTTAAGTCCACAACT
661610 TCGTGGCATC
Statistics
Matches: 132, Mismatches: 15, Indels: 7
0.86 0.10 0.05
Matches are distributed among these distances:
96 18 0.14
97 16 0.12
98 24 0.18
99 62 0.47
100 12 0.09
ACGTcount: A:0.20, C:0.35, G:0.13, T:0.32
Consensus pattern (96 bp):
CCCTTTTAAAGTCCACAACTCCGTGGCACCTTGTTCCTTTAAGTCCACAACTCCATGGCACCCTT
TTAAAGCCCACAACTCCGTGGCACTCTTTTC
Found at i:661660 original size:32 final size:33
Alignment explanation
Indices: 661624--661986 Score: 510
Period size: 32 Copynumber: 11.2 Consensus size: 33
661614 GGCATCTTTC
661624 ACCCTTCTC-AAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
661656 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
661688 ACCC-TCTCTAAAGCCCATACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
661720 ACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
661752 ACCCTT-TCTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
661784 AACTTTGTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
661817 ACCTTTTTC-AAAGCCCACACAAGTCGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* * *
661849 A-CCTTTTTTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
*
661881 A-CCTTCTTCTCAAGCCCACACAAGTCGGTGGCA
1 ACCCTTC-TCTAAAGCCCACACAAGTCGGTGGCA
* *
661914 ACCC-TCTCTAAAGCCCACACAAATTGGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
* *
661946 ACCATTCTCTAAAGCCCACACAAGTCAGTGGCA
1 ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
661979 ACCCTTCT
1 ACCCTTCT
661987 AAGCCCAATA
Statistics
Matches: 298, Mismatches: 25, Indels: 15
0.88 0.07 0.04
Matches are distributed among these distances:
31 8 0.03
32 197 0.66
33 91 0.31
34 2 0.01
ACGTcount: A:0.28, C:0.33, G:0.18, T:0.21
Consensus pattern (33 bp):
ACCCTTCTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:661830 original size:65 final size:64
Alignment explanation
Indices: 661628--661993 Score: 513
Period size: 65 Copynumber: 5.7 Consensus size: 64
661618 TCTTTCACCC
*
661628 TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCTT
* * * *
661693 CTCTAAAGCCCATACAAGTTGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCTT
* * *
661757 TTCTAAAGCCCACACAAGTTGGTGGCAAACTTTGTCTAAAGCCCACACAAGTCGGTGGCAACCTT
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCCTT-TCTAAAGCCCACACAAGTCGGTGGCAACCTT
* * *
661822 TT-TCAAAGCCCACACAAGTCGGTGGCAACCTTTTTTAAAGCCCACACAAGTTGGTGGCAACCTT
1 TTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCTT
* * * *
661886 CTTCTCAAGCCCACACAAGTCGGTGGCAACCCTCTCTAAAGCCCACACAAATTGGTGGCAACCAT
1 -TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACC-T
661951 T
64 T
* *
661952 CTCTAAAGCCCACACAAGTCAGTGGCAACCC-TTCT-AAGCCCA
1 TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCA
661994 ATATAGCTGG
Statistics
Matches: 275, Mismatches: 21, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
63 7 0.03
64 120 0.44
65 145 0.53
66 3 0.01
ACGTcount: A:0.29, C:0.33, G:0.18, T:0.21
Consensus pattern (64 bp):
TTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCTT
Found at i:661861 original size:97 final size:96
Alignment explanation
Indices: 661624--661979 Score: 500
Period size: 97 Copynumber: 3.7 Consensus size: 96
661614 GGCATCTTTC
661624 ACCC-TTCTCAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCA
1 ACCCTTTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCA
* * * * *
661688 ACCCTCTCTAAAGCCCATACAAGTTGGTGGCA
65 AACTTTTCTAAAGCCCACACAAGTCGGTGGCA
*
661720 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTTGGTGGCAA
1 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
661785 ACTTTGTCTAAAGCCCACACAAGTCGGTGGCA
66 ACTTT-TCTAAAGCCCACACAAGTCGGTGGCA
* * * *
661817 A-CCTTTTTCAAAGCCCACACAAGTCGGTGGCAACCTTTTTTAAAGCCCACACAAGTTGGTGGCA
1 ACCCTTTCT-AAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCA
* *
661881 ACCTTCTTCTCAAGCCCACACAAGTCGGTGGCA
65 AACTT-TTCTAAAGCCCACACAAGTCGGTGGCA
* * * * *
661914 ACCCTCTCTAAAGCCCACACAAATTGGTGGCAACCATTCTCTAAAGCCCACACAAGTCAGTGGCA
1 ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTT-TCTAAAGCCCACACAAGTCGGTGGCA
661979 A
65 A
661980 CCCTTCTAAG
Statistics
Matches: 235, Mismatches: 19, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
96 67 0.29
97 138 0.59
98 30 0.13
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (96 bp):
ACCCTTTCTAAAGCCCACACAAGTCGGTGGCAACCCTTTCTAAAGCCCACACAAGTCGGTGGCAA
ACTTTTCTAAAGCCCACACAAGTCGGTGGCA
Found at i:662050 original size:49 final size:48
Alignment explanation
Indices: 661986--662267 Score: 332
Period size: 43 Copynumber: 5.9 Consensus size: 48
661976 GCAACCCTTC
* *
661986 TAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTT-TCTT
* *
662035 TAAGTCCAATGTAGCTAGCCTTGAATCAGCACATTGGCA-C----CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
* *
662078 TAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTT-TTCTT
*
662127 TAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCA-C----CTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
*
662170 TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACC-TTT---TCTT
* * *
662222 TAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTT
1 TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-CCTTTT
662268 TCTCATCTTT
Statistics
Matches: 200, Mismatches: 17, Indels: 32
0.80 0.07 0.13
Matches are distributed among these distances:
43 78 0.39
44 2 0.01
48 2 0.01
49 75 0.38
52 41 0.20
53 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.17, T:0.32
Consensus pattern (48 bp):
TAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCACCTTTTCTT
Found at i:662148 original size:92 final size:92
Alignment explanation
Indices: 661981--662266 Score: 457
Period size: 92 Copynumber: 3.1 Consensus size: 92
661971 CAGTGGCAAC
*
661981 CCTTCTAAGCCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTT-TATCTTTAAGTCCAAT
1 CCTT-TAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCT-TCTTTAAGTCCAAT
*
662045 GTAGCTAGCCTTGAATCAGCACATTGGCA
64 GTAGCTGGCCTTGAATCAGCACATTGGCA
*
662074 CCTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
662139 AGCTGGCCTTGAATCAGCACATTGGCA
66 AGCTGGCCTTGAATCAGCACATTGGCA
* *
662166 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAA
1 CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CTTCTTTAAGTCCAA
*
662231 TGTAGCTGGCCTTGAATCAGCACATTGACA
63 TGTAGCTGGCCTTGAATCAGCACATTGGCA
662261 TCCTTT
1 -CCTTT
662267 TTCTCATCTT
Statistics
Matches: 181, Mismatches: 7, Indels: 7
0.93 0.04 0.04
Matches are distributed among these distances:
92 127 0.70
93 5 0.03
94 2 0.01
95 42 0.23
96 5 0.03
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (92 bp):
CCTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGT
AGCTGGCCTTGAATCAGCACATTGGCA
Found at i:662245 original size:52 final size:55
Alignment explanation
Indices: 662167--662288 Score: 178
Period size: 52 Copynumber: 2.3 Consensus size: 55
662157 ACATTGGCAC
* *
662167 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
* *
662219 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
*
662274 CTTTAAGCCCAATAT
1 CTTTAAGTCCAATAT
662289 CGTTAGCCGT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
52 38 0.63
53 2 0.03
54 5 0.08
55 15 0.25
ACGTcount: A:0.25, C:0.25, G:0.14, T:0.36
Consensus pattern (55 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
Found at i:663129 original size:13 final size:13
Alignment explanation
Indices: 663111--663167 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
663101 CATAATGTGT
663111 TGTATCGATACAA
1 TGTATCGATACAA
663124 TGTATCGATACATAA
1 TGTATCGATAC--AA
663139 GTTTTGTATCGATACAA
1 ----TGTATCGATACAA
663156 TGTATCGATACA
1 TGTATCGATACA
663168 TAAGTTTTGT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 23 0.61
15 2 0.05
17 2 0.05
19 11 0.29
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:663148 original size:19 final size:19
Alignment explanation
Indices: 663089--663186 Score: 94
Period size: 19 Copynumber: 5.7 Consensus size: 19
663079 ATTTCAACGA
663089 TTTGTATCGATACATAATGT
1 TTTGTATCGATACATAA-GT
*
663109 GTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
663124 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
663141 TTTGTATCGATAC--AA--
1 TTTGTATCGATACATAAGT
663156 --TGTATCGATACATAAGT
1 TTTGTATCGATACATAAGT
663173 TTTGTATCGATACA
1 TTTGTATCGATACA
663187 ATTTAAGCTA
Statistics
Matches: 65, Mismatches: 1, Indels: 25
0.71 0.01 0.27
Matches are distributed among these distances:
13 22 0.34
15 4 0.06
17 2 0.03
18 2 0.03
19 23 0.35
20 12 0.18
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (19 bp):
TTTGTATCGATACATAAGT
Found at i:663151 original size:32 final size:32
Alignment explanation
Indices: 663091--663188 Score: 178
Period size: 32 Copynumber: 3.0 Consensus size: 32
663081 TTCAACGATT
*
663091 TGTATCGATACATAATGTGTTGTATCGATACAA
1 TGTATCGATACATAA-GTTTTGTATCGATACAA
663124 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
663156 TGTATCGATACATAAGTTTTGTATCGATACAA
1 TGTATCGATACATAAGTTTTGTATCGATACAA
663188 T
1 T
663189 TTAAGCTACT
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
32 49 0.77
33 15 0.23
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (32 bp):
TGTATCGATACATAAGTTTTGTATCGATACAA
Found at i:663263 original size:52 final size:50
Alignment explanation
Indices: 663207--663356 Score: 201
Period size: 52 Copynumber: 2.9 Consensus size: 50
663197 CTGCCAAAAA
* * *
663207 ATGTATCGATACATTGATCTTTGTATCAATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
663259 ATGTATCGATACACTATAAAATGTATCGATACATGCAGGCAAATTTGCCCAG
1 ATGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAG
*
663311 ATGTATGGATACACTATTAAATGTATCGATACATGCAGGCAAATTT
1 ATGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
663357 TCATATTTCG
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
51 2 0.02
52 86 0.98
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (50 bp):
ATGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAG
Found at i:668366 original size:79 final size:80
Alignment explanation
Indices: 668199--668469 Score: 284
Period size: 79 Copynumber: 3.4 Consensus size: 80
668189 GAAATTTAAT
*
668199 ATTTTGGAGATAATAA-C-GGAGTTGGAGTATCCCCTT-GAAAATAACGAGGTTGGAGTATCCCC
1 ATTTTGGAAATAA-AATCGGGA-TTGGAGTATCCCCTTAG-AAATAACGAGGTTGGAGTATCCCC
* * * *
668261 AGTTGTGAAAAAACGATG
63 AATTATGAAAAATCAATG
* *
668279 A-TTAGGAAATAAAATCGGGATTGGAGTATCCCCTTAGAAATAACGGGGTTGGAGTATCCCCAAT
1 ATTTTGGAAATAAAATCGGGATTGGAGTATCCCCTTAGAAATAACGAGGTTGGAGTATCCCCAAT
*
668343 TATGAGAAATCAAT-
66 TATGAAAAATCAATG
** * * * *
668357 ATTTTGGAAATAAAGCCGGGGTTGGAGTATCCCC-AATGAAATAACGAGGTTGGAGTATCCTCGA
1 ATTTTGGAAATAAAATCGGGATTGGAGTATCCCCTTA-GAAATAACGAGGTTGGAGTATCCCCAA
* ***
668421 TTGTGAAAAATTGGTG
65 TTATGAAAAATCAATG
* *
668437 TTTTTGGAAATAAAATCGGAATTGGAGTATCCC
1 ATTTTGGAAATAAAATCGGGATTGGAGTATCCC
668470 GATTAAAGGA
Statistics
Matches: 159, Mismatches: 26, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
78 4 0.03
79 122 0.77
80 33 0.21
ACGTcount: A:0.34, C:0.13, G:0.25, T:0.27
Consensus pattern (80 bp):
ATTTTGGAAATAAAATCGGGATTGGAGTATCCCCTTAGAAATAACGAGGTTGGAGTATCCCCAAT
TATGAAAAATCAATG
Found at i:668536 original size:51 final size:51
Alignment explanation
Indices: 668404--668536 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 51
668394 GAAATAACGA
* * *
668404 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCCCGATTATG-AAAATTGGTGTTTTTGAAAATAAAATCGG
** *
668456 AATTGGAGTAT-CCCGATTAAAGGAAAATTGGTG-TTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCCCGATT--ATGAAAATTGGTGTTTTTGAAAATAAAATCGG
668507 GGTTGGAGTATCCCCGATTATGAACAATTG
1 GGTTGGAGTATCCCCGATTATGAA-AATTG
668537 AGAAACTTAA
Statistics
Matches: 68, Mismatches: 9, Indels: 9
0.79 0.10 0.10
Matches are distributed among these distances:
50 4 0.06
51 37 0.54
52 26 0.38
53 1 0.01
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAATTGGTGTTTTTGAAAATAAAATCGG
Found at i:670911 original size:13 final size:13
Alignment explanation
Indices: 670893--670918 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
670883 ACAAAGATCG
670893 ATGTATCGATACA
1 ATGTATCGATACA
670906 ATGTATCGATACA
1 ATGTATCGATACA
670919 TTTCCTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:671017 original size:19 final size:19
Alignment explanation
Indices: 670971--671020 Score: 73
Period size: 19 Copynumber: 2.6 Consensus size: 19
670961 AGCGATACAT
*
670971 TGTATCGACACAAAACTTA
1 TGTATCGATACAAAACTTA
* *
670990 TGTATCGATACAACATTTA
1 TGTATCGATACAAAACTTA
671009 TGTATCGATACA
1 TGTATCGATACA
671021 TTTTCTATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (19 bp):
TGTATCGATACAAAACTTA
Found at i:671972 original size:61 final size:61
Alignment explanation
Indices: 671880--672283 Score: 371
Period size: 61 Copynumber: 6.8 Consensus size: 61
671870 AGGAAGTGTG
* * * * **
671880 TCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAAGGTG
1 TCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* * *
671941 TCCTGCCCTTTAAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTGCAAAA-AGAAA-GCA
1 TCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTG-AAAAGA-AAAGGCA
* *
672002 TCATGCTCTTTGAA-GACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAGGAGAAGGCA
1 TCCTGCTCTTT-AAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAA-GAAAAGGCA
* * * *
672063 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCATAGAGAAA-GCA
1 TCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGA-AAAGGCA
* * * *
672124 TCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAATTTGTGTGGGCTTT-----G-AAAGGCG
1 TCCTGCTCTTTAAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* * *
672179 TCCTGCTCTTTGAGGGCTGGAAAA-TGCCACCAACTTGTGTGGGCTTT------AAAAGGCG
1 TCCTGCTCTTTAAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
* * * *
672234 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGT-GGCTTCGAAA
1 TCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAA
672284 GGTGTCCTGC
Statistics
Matches: 295, Mismatches: 31, Indels: 37
0.81 0.09 0.10
Matches are distributed among these distances:
54 12 0.04
55 85 0.29
56 1 0.00
59 4 0.01
60 3 0.01
61 173 0.59
62 17 0.06
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (61 bp):
TCCTGCTCTTTAAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAGGCA
Found at i:672104 original size:122 final size:120
Alignment explanation
Indices: 671880--672310 Score: 493
Period size: 122 Copynumber: 3.7 Consensus size: 120
671870 AGGAAGTGTG
* * * *
671880 TCCTACTCTTTGAGGACTGAAAAGTGCCACCAACTCGTATGGGCTTTGAAAAGAAAAGGTGTCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTT-AAAAG-AAAGGCGTCCT
* * *
671945 GCCCTTTAAGGACTGAAAGGTGCCACCAACTTATGTGGGCTTTGCAAAAAGAAAGCA
64 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
* * *
672002 TCATGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCT
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAA-GA-AAGGCGTCCT
* *
672067 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCATAGAGAAAGCA
64 GCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
* *
672124 TCCTGCTCTTTGAGGATTGGAAAA-TGCCACCAATTTGTGTGGGCTTT----GAAAGGCGTCCTG
1 TCCTGCTCTTTGAGGACT-GAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTG
* * *
672184 CTCTTTGAGGGCTGGAAA-ATGCCACCAACTTGTGTGGGCTTT---AAAAG---GCG
65 CTCTTTGAGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
* * * *
672234 TCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTATGT-GGC-TT---CGAAAGGTGTCCTGC
1 TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
672294 TCTTTGAGGACT-AAAGG
66 TCTTTGAGGACTGAAAGG
672311 GTGAAAGGAG
Statistics
Matches: 273, Mismatches: 29, Indels: 28
0.83 0.09 0.08
Matches are distributed among these distances:
107 3 0.01
108 2 0.01
109 31 0.11
110 33 0.12
113 3 0.01
116 45 0.16
117 6 0.02
121 5 0.02
122 140 0.51
123 5 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCTGCTCTTTGAGGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGAAAGGCGTCCTGC
TCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCAAAAAGAAAGCA
Found at i:672196 original size:28 final size:28
Alignment explanation
Indices: 672164--672248 Score: 66
Period size: 28 Copynumber: 3.1 Consensus size: 28
672154 CAATTTGTGT
672164 GGGCTTTGAAAGGCGTCCTGCTCTTTGA
1 GGGCTTTGAAAGGCGTCCTGCTCTTTGA
* * ** ** * *
672192 GGGC-TGGAAAATGCCACCAACT-TGTGT
1 GGGCTTTG-AAAGGCGTCCTGCTCTTTGA
*
672219 GGGCTTTAAAAGGCGTCCTGCTCTTTGA
1 GGGCTTTGAAAGGCGTCCTGCTCTTTGA
672247 GG
1 GG
672249 ACTGAAAGGT
Statistics
Matches: 37, Mismatches: 17, Indels: 6
0.62 0.28 0.10
Matches are distributed among these distances:
27 18 0.49
28 19 0.51
ACGTcount: A:0.19, C:0.21, G:0.32, T:0.28
Consensus pattern (28 bp):
GGGCTTTGAAAGGCGTCCTGCTCTTTGA
Found at i:672302 original size:54 final size:55
Alignment explanation
Indices: 672124--672305 Score: 269
Period size: 55 Copynumber: 3.3 Consensus size: 55
672114 AGAGAAAGCA
* *
672124 TCCTGCTCTTTGAGGATTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
672179 TCCTGCTCTTTGAGGGCTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
672234 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGT-GGCTTCGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
672288 TCCTGCTCTTTGAGGACT
1 TCCTGCTCTTTGAGGACT
672306 AAAGGGTGAA
Statistics
Matches: 116, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
54 33 0.28
55 83 0.72
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:672465 original size:55 final size:55
Alignment explanation
Indices: 672324--672630 Score: 362
Period size: 55 Copynumber: 5.4 Consensus size: 55
672314 AAAGGAGAGA
* *
672324 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAG
* * * * *
672385 GCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
672440 GCGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
* * *
672495 ACGTCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTTGGCTTTAAATGGAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT--A---AAAG
* * *
672555 GCGTCCTGCTCTTTGAAGACTGGAAGGTGCCACAAACTTGTGTGGGCTTTAAAAG
1 GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
*
672610 GCATCCTGCTCTTTGAGGACT
1 GCGTCCTGCTCTTTGAGGACT
672631 AAAGGGTGAA
Statistics
Matches: 214, Mismatches: 27, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
55 122 0.57
58 1 0.00
60 48 0.22
61 43 0.20
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (55 bp):
GCGTCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAG
Found at i:672478 original size:209 final size:204
Alignment explanation
Indices: 672115--672515 Score: 563
Period size: 209 Copynumber: 1.9 Consensus size: 204
672105 GCTTTGCATA
* * * *
672115 GAGAAAGCATCCTGCTCTTTGAGGATTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCGT
1 GAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCAT
* * * *
672180 CCTGCTCTTTGAGGGCTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
66 CCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGTCCTGCTCTTT
* **
672245 GAGGACTGAAAGGTGCCACCAACTTATGT-GGCTTCGAAAGGTGTCCTGCTCTTTGAGGACTAAA
131 GAGGACTGAAAGATGCCACCAACTTATGTGGGCTTCGAAAGACGTCCTGCTCTTTGAGGACTAAA
672309 GGGTGAAAG
196 GGGTGAAAG
* * **
672318 GAGAGAGCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAA
1 GAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTT-----G-AA
*
672383 AGGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGTCTTG
60 AGGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGTCCTG
* *
672448 CTCTTTGAGGACTGGAAA-ATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAG
125 CTCTTTGAGGACT-GAAAGATGCCACCAACTTATGTGGGCTTCGAAAGACGTCCTGCTCTTTGAG
672512 GACT
189 GACT
672516 GGGAAGTGCC
Statistics
Matches: 172, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
203 49 0.28
208 1 0.01
209 89 0.52
210 33 0.19
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (204 bp):
GAGAAAGCATCCTGCTCTTTGAGGACTAGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCAT
CCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGTCCTGCTCTTT
GAGGACTGAAAGATGCCACCAACTTATGTGGGCTTCGAAAGACGTCCTGCTCTTTGAGGACTAAA
GGGTGAAAG
Found at i:672527 original size:264 final size:265
Alignment explanation
Indices: 672050--672543 Score: 766
Period size: 264 Copynumber: 1.9 Consensus size: 265
672040 GTGGGCTTTA
* *
672050 AAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCATA
1 AAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
* ** * * *
672115 GAGAAAGCATCCTGCTCTTTGAGGATTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCGT
66 GAGAAAGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGT
* *
672180 CCTGCTCTTTGAGGGCTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTT
131 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTT
672245 GAGGACTGAAAGGTGCCACCAACTTATG-TGGCTTCGAAAGGTGTCCTGCTCTTTGAGGACTAAA
196 GAGGACTGAAAGGTGCCACCAACTTATGTTGGCTTCGAAAGGTGTCCTGCTCTTTGAGGACTAAA
672309 GGGTG
261 GGGTG
*
672314 AAAGGAG-AGAGCGTCCTGCTCTTTGAGGACT-AGAAGGTGCCACCAACTTGTGTGGGCTTT-AA
1 AAAGGAGAAG-GCATCCTGCTCTTTGAGGACTGA-AAGGTGCCACCAACTTGTGTGGGCTTTGAA
672376 AAG-GAAAAGGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
64 AAGAG-AAA-GCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
* *
672440 GCGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCT
127 GCGTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCT
* *
672505 CTTTGAGGACTGGGAA-GTGCCACCAACTTGTGTTGGCTT
192 CTTTGAGGACT-GAAAGGTGCCACCAACTTATGTTGGCTT
672544 TAAATGGAAA
Statistics
Matches: 209, Mismatches: 15, Indels: 11
0.89 0.06 0.05
Matches are distributed among these distances:
262 1 0.00
263 9 0.04
264 190 0.91
265 9 0.04
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.27
Consensus pattern (265 bp):
AAAGGAGAAGGCATCCTGCTCTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAA
GAGAAAGCATCCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAGGCGT
CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTAAAAGACGTCCTGCTCTTT
GAGGACTGAAAGGTGCCACCAACTTATGTTGGCTTCGAAAGGTGTCCTGCTCTTTGAGGACTAAA
GGGTG
Found at i:672593 original size:115 final size:110
Alignment explanation
Indices: 672324--672630 Score: 389
Period size: 115 Copynumber: 2.7 Consensus size: 110
672314 AAAGGAGAGA
*
672324 GCGTCCTGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCAT
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCAT
* *
672389 CCTACTCTTTGAGGACAGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
60 CCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
* ** * *
672440 GCGTCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
* * *
672505 CTTTGAGGACTGGGAAGTGCCACCAACTTGTGTTGGCTTTAAATGGAAAG
66 CTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTT--A---AAAG
* * *
672555 GCGTCCTGCTCTTTGAAGACTGGAAGGTGCCACAAACTTGTGTGGGCTTTAAAAGGCATCCTGCT
1 GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
672620 CTTTGAGGACT
66 CTTTGAGGACT
672631 AAAGGGTGAA
Statistics
Matches: 167, Mismatches: 19, Indels: 11
0.85 0.10 0.06
Matches are distributed among these distances:
110 47 0.28
111 1 0.01
112 1 0.01
115 72 0.43
116 46 0.28
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.27
Consensus pattern (110 bp):
GCGTCCTGCTCTTTGAGGACTGGAAGGTGCCACCAACTTGTGTGGGCTTTGAAAGGCATCCTGCT
CTTTGAGGACTGGAAAATGCCACCAACTTGTGTAGGCTTTAAAAG
Found at i:672622 original size:325 final size:321
Alignment explanation
Indices: 672005--672729 Score: 1046
Period size: 325 Copynumber: 2.2 Consensus size: 321
671995 GAAAGCATCA
* *
672005 TGCTCTTTGAAGACTGAAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGCATCCTGCT
1 TGCTCTTTGAGGACTG--AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCT
* * *
672070 CTTTGAGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGCATAGAGAAAGCATCCTGCTCTTT
64 CTTTGAGGACGGAAAGATGCCACCAACTTGTGTAGGCTTT--ATAGAGAAAGCATCCTGCTCTTT
* * * *
672135 GAGGATTGGAAAATGCCACCAATTTGTGTGGGCTTTGAAAGGCGTCCTGCTCTTTGAGGGCTGGA
127 GAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGGA
* *
672200 AAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAGGACTGAAAGGTGCCACC
192 AAATGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACA
* **
672265 AACTTATGTGGCTTCGAAAGGTGTCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCC
257 AACTTATGTGGCTTCAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCC
*
672330 TGCTCTTTGAGGACTAGAAGGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTACT
1 TGCTCTTTGAGGACT-GAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCT
* * *
672395 CTTTGAGGACAGGAAA-ATGCCACCAACTTGTGTAGGC-TT-TA-A-AAGGCGTCTTGCTCTTTG
64 CTTTGAGGAC-GGAAAGATGCCACCAACTTGTGTAGGCTTTATAGAGAAAGCATCCTGCTCTTTG
*
672455 AGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGGGA
128 AGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGGAA
* * *
672520 AGTGCCACCAACTTGTGTTGGCTTTAAATGGAAAGGCGTCCTGCTCTTTGAAGACTGGAAGGTGC
193 AATGCCACCAACTTGTGTGGGCTTT--A---AAAGGCGTCCTGCTCTTTGAAGACTGAAAGGTGC
* *
672585 CACAAACTTGTGTGGGCTTTAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAG
253 CACAAACTTATGT-GGCTTCAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAG
672650 CGTCC
317 CGTCC
* *
672655 TGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGTTTTAAAAGGAAAAAGCATCCTGCT
1 TGCTCTTTGAGGACT--GAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCT
672720 CTTTGAGGAC
64 CTTTGAGGAC
672730 TAAAAGGTGG
Statistics
Matches: 362, Mismatches: 28, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
319 98 0.27
320 1 0.00
321 3 0.01
324 47 0.13
325 205 0.57
326 8 0.02
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.26
Consensus pattern (321 bp):
TGCTCTTTGAGGACTGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCATCCTGCTCT
TTGAGGACGGAAAGATGCCACCAACTTGTGTAGGCTTTATAGAGAAAGCATCCTGCTCTTTGAGG
ACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGACGTCCTGCTCTTTGAGGACTGGAAAAT
GCCACCAACTTGTGTGGGCTTTAAAAGGCGTCCTGCTCTTTGAAGACTGAAAGGTGCCACAAACT
TATGTGGCTTCAAAAGGCATCCTGCTCTTTGAGGACTAAAGGGTGAAAGGAGAGAGCGTCC
Found at i:673716 original size:1 final size:1
Alignment explanation
Indices: 673705--673780 Score: 53
Period size: 1 Copynumber: 76.0 Consensus size: 1
673695 CAGATTCTTC
* * * * * ** * * **
673705 TTTTTTCTTTTTTCTTTGTTTTTTTTGTTTTTTTTTGTTCGTTTTTTTTGTTGTTTTTTTTTTGC
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
673770 TTTTTTTTTTT
1 TTTTTTTTTTT
673781 AGAAAAGAAG
Statistics
Matches: 55, Mismatches: 20, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
1 55 1.00
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.86
Consensus pattern (1 bp):
T
Found at i:673721 original size:14 final size:13
Alignment explanation
Indices: 673702--673780 Score: 79
Period size: 13 Copynumber: 6.1 Consensus size: 13
673692 AAGCAGATTC
673702 TTCTTTTTTCTTTT
1 TTCTTTTTT-TTTT
*
673716 TTCTTTGTTTTTT
1 TTCTTTTTTTTTT
* *
673729 TTGTTTTTTTTTG
1 TTCTTTTTTTTTT
* *
673742 TTCGTTTTTTTTG
1 TTCTTTTTTTTTT
*
673755 TT-GTTTTTTTTT
1 TTCTTTTTTTTTT
*
673767 TGCTTTTTTTTTT
1 TTCTTTTTTTTTT
673780 T
1 T
673781 AGAAAAGAAG
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
12 10 0.18
13 37 0.67
14 8 0.15
ACGTcount: A:0.00, C:0.06, G:0.09, T:0.85
Consensus pattern (13 bp):
TTCTTTTTTTTTT
Found at i:673730 original size:13 final size:12
Alignment explanation
Indices: 673706--673780 Score: 78
Period size: 12 Copynumber: 5.9 Consensus size: 12
673696 AGATTCTTCT
673706 TTTTTCTTTTTTC
1 TTTTT-TTTTTTC
*
673719 TTTGTTTTTTTTG
1 TTT-TTTTTTTTC
673732 TTTTTTTTTGTTC
1 TTTTTTTTT-TTC
* *
673745 GTTTTTTTTGTTG
1 -TTTTTTTTTTTC
*
673758 TTTTTTTTTTGC
1 TTTTTTTTTTTC
673770 TTTTTTTTTTT
1 TTTTTTTTTTT
673781 AGAAAAGAAG
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
12 25 0.49
13 16 0.31
14 10 0.20
ACGTcount: A:0.00, C:0.05, G:0.09, T:0.85
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:673748 original size:23 final size:24
Alignment explanation
Indices: 673712--673778 Score: 82
Period size: 23 Copynumber: 2.8 Consensus size: 24
673702 TTCTTTTTTC
*
673712 TTTTTTCTTTGTTTTTTTTGTT-T
1 TTTTTTCTTCGTTTTTTTTGTTGT
*
673735 TTTTTTGTTCGTTTTTTTTGTTGT
1 TTTTTTCTTCGTTTTTTTTGTTGT
* *
673759 TTTTTTTTTGCTTTTTTTTT
1 TTTTTTCTT-CGTTTTTTTT
673779 TTAGAAAAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
23 20 0.53
24 9 0.24
25 9 0.24
ACGTcount: A:0.00, C:0.04, G:0.10, T:0.85
Consensus pattern (24 bp):
TTTTTTCTTCGTTTTTTTTGTTGT
Found at i:681977 original size:13 final size:13
Alignment explanation
Indices: 681959--681994 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
681949 CCTGATACGG
681959 TTACATTGCTTGA
1 TTACATTGCTTGA
*
681972 TTACATTACTTGA
1 TTACATTGCTTGA
681985 TTACATTGCT
1 TTACATTGCT
681995 AATAAACCTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.17, G:0.11, T:0.47
Consensus pattern (13 bp):
TTACATTGCTTGA
Found at i:688690 original size:79 final size:79
Alignment explanation
Indices: 688583--688784 Score: 210
Period size: 79 Copynumber: 2.6 Consensus size: 79
688573 GAGATAATAA
* * * * ** * *
688583 CGGGGTTATAGTATCCCCTTC-AAAATAACGGGGTTGGAGTATCCCCGGTTGTGAAAAATCGATG
1 CGGGATTAGAGTATCCCC-TCGGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCAAT-
*
688647 A-TTAGAAAATAAAAT
64 ATTTAGAAAATAAAAC
* *
688662 CGGGATTAGCGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGATTAGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCAATAT
* * *
688727 TTTGGAAATAAAGC
66 TTAGAAAATAAAAC
* * **
688741 CGGGGTTGGAGTATCCCCTCGGAGGTAACAGGGTTGGAGTATCC
1 CGGGATTAGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCC
688785 TCGATAAAAT
Statistics
Matches: 102, Mismatches: 19, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
78 3 0.03
79 99 0.97
ACGTcount: A:0.31, C:0.17, G:0.27, T:0.25
Consensus pattern (79 bp):
CGGGATTAGAGTATCCCCTCGGAAATAACAGGGTTGGAGTATCCCCAATTATGAAAAATCAATAT
TTAGAAAATAAAAC
Found at i:688921 original size:52 final size:53
Alignment explanation
Indices: 688800--688922 Score: 144
Period size: 51 Copynumber: 2.4 Consensus size: 53
688790 AAAATAACGA
** *
688800 GGTTGGAGTATCCTCGATT-GTGAAAAATTGGTGTTTTTGGAAATAAAATCGG
1 GGTTGGAGTATCCTCGATTAAAGAAAAATTGGTGTTTTTGAAAATAAAATCGG
** * * *
688852 AATTGGAGTA-CCCCGATTAAAGGAAAATTTGTG-TTTTGAAAATAAAATCGG
1 GGTTGGAGTATCCTCGATTAAAGAAAAATTGGTGTTTTTGAAAATAAAATCGG
*
688903 GGTTGGAATATCCTCGATTA
1 GGTTGGAGTATCCTCGATTA
688923 TGAACAATTG
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
51 31 0.54
52 26 0.46
ACGTcount: A:0.33, C:0.10, G:0.25, T:0.33
Consensus pattern (53 bp):
GGTTGGAGTATCCTCGATTAAAGAAAAATTGGTGTTTTTGAAAATAAAATCGG
Found at i:691643 original size:13 final size:13
Alignment explanation
Indices: 691625--691650 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
691615 TACAGCAAGT
691625 ATGTATCGATACA
1 ATGTATCGATACA
691638 ATGTATCGATACA
1 ATGTATCGATACA
691651 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:693910 original size:21 final size:21
Alignment explanation
Indices: 693877--693921 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
693867 TTGCATGTTG
*
693877 AAATAAAGAAGTTGGCTAATGA
1 AAATAAAGAAGTTAGCTAA-GA
*
693899 AAATAATG-AGTTAGCTAAGA
1 AAATAAAGAAGTTAGCTAAGA
693919 AAA
1 AAA
693922 ATGAAAACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 5 0.24
21 9 0.43
22 7 0.33
ACGTcount: A:0.53, C:0.04, G:0.20, T:0.22
Consensus pattern (21 bp):
AAATAAAGAAGTTAGCTAAGA
Found at i:695745 original size:15 final size:15
Alignment explanation
Indices: 695725--695755 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
695715 TAAAAATGTC
*
695725 CAAAATGAGGAAGCT
1 CAAAATGAAGAAGCT
695740 CAAAATGAAGAAGCT
1 CAAAATGAAGAAGCT
695755 C
1 C
695756 CAAACGAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.23, T:0.13
Consensus pattern (15 bp):
CAAAATGAAGAAGCT
Found at i:697853 original size:13 final size:13
Alignment explanation
Indices: 697835--697873 Score: 78
Period size: 13 Copynumber: 3.0 Consensus size: 13
697825 CATTTTTTCT
697835 TTGTATCGATACA
1 TTGTATCGATACA
697848 TTGTATCGATACA
1 TTGTATCGATACA
697861 TTGTATCGATACA
1 TTGTATCGATACA
697874 GGGTGATTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:700435 original size:13 final size:13
Alignment explanation
Indices: 700417--700442 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
700407 TACAGCAAGT
700417 ATGTATCGATACA
1 ATGTATCGATACA
700430 ATGTATCGATACA
1 ATGTATCGATACA
700443 CAAAAAATTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:701228 original size:13 final size:13
Alignment explanation
Indices: 701210--701235 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
701200 ACAAAGATCG
701210 ATGTATCGATACA
1 ATGTATCGATACA
701223 ATGTATCGATACA
1 ATGTATCGATACA
701236 TTTCCTAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:701312 original size:19 final size:18
Alignment explanation
Indices: 701288--701350 Score: 73
Period size: 19 Copynumber: 3.7 Consensus size: 18
701278 AGTGATACAT
701288 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
701307 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
701320 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
701339 TGTATCGATACA
1 TGTATCGATACA
701351 TTTTCTATTT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 11 0.29
14 1 0.03
16 2 0.05
18 1 0.03
19 23 0.61
ACGTcount: A:0.37, C:0.17, G:0.13, T:0.33
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:701322 original size:32 final size:32
Alignment explanation
Indices: 701281--701352 Score: 135
Period size: 32 Copynumber: 2.2 Consensus size: 32
701271 GCTTCGTAGT
701281 GATACATTGTATCGATACAAAACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
*
701313 GATACATTGTATCGATACAACACTTATGTATC
1 GATACATTGTATCGATACAAAACTTATGTATC
701345 GATACATT
1 GATACATT
701353 TTCTATTTGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
32 39 1.00
ACGTcount: A:0.36, C:0.17, G:0.12, T:0.35
Consensus pattern (32 bp):
GATACATTGTATCGATACAAAACTTATGTATC
Found at i:701325 original size:13 final size:13
Alignment explanation
Indices: 701307--701331 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
701297 ACAAAACTTA
701307 TGTATCGATACAT
1 TGTATCGATACAT
701320 TGTATCGATACA
1 TGTATCGATACA
701332 ACACTTATGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:707254 original size:20 final size:20
Alignment explanation
Indices: 707208--707265 Score: 71
Period size: 20 Copynumber: 2.9 Consensus size: 20
707198 GTAAAAACAC
*
707208 AAAATGTATCAATACACTCA
1 AAAATGTATCAATACATTCA
* * *
707228 TACATGTATCAATACATTGA
1 AAAATGTATCAATACATTCA
*
707248 AAAATGTATCGATACATT
1 AAAATGTATCAATACATT
707266 TGGGTACTTT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.45, C:0.16, G:0.09, T:0.31
Consensus pattern (20 bp):
AAAATGTATCAATACATTCA
Found at i:708553 original size:13 final size:13
Alignment explanation
Indices: 708535--708559 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
708525 ACACAAAGTA
708535 TGTATCGATACAT
1 TGTATCGATACAT
708548 TGTATCGATACA
1 TGTATCGATACA
708560 CCATAAAATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:708556 original size:32 final size:33
Alignment explanation
Indices: 708515--708582 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
708505 GTAGCCAAAC
* *
708515 TTGTATCGATACA-CA-AAGTATGTATCGATACA
1 TTGTATCGATACACCATAA-AATGTATCGATAAA
708547 TTGTATCGATACACCATAAAATGTATCGATAAA
1 TTGTATCGATACACCATAAAATGTATCGATAAA
708580 TTG
1 TTG
708583 GCTTGTAACG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 13 0.41
33 17 0.53
34 2 0.06
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (33 bp):
TTGTATCGATACACCATAAAATGTATCGATAAA
Found at i:710648 original size:79 final size:79
Alignment explanation
Indices: 710543--710749 Score: 245
Period size: 79 Copynumber: 2.6 Consensus size: 79
710533 GAGATAATAA
* * * * * *
710543 CGGGGTTGGAGTGTCCCCTTGAAAATAACGGGGCTGGAGTATCCCCGGTTGTGAGAAATCGATGA
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAAT-A
*
710608 -TTAGAAAAAAAAAT
65 TTTAGAAAAAAAAAC
* *
710622 CGGGATTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCAATTATGAGAAATCAATAT
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
* ** * *
710687 TTTGGGAATAAAGC
66 TTAGAAAAAAAAAC
* **
710701 CGGGGTTGGAGTATCCCCTCGGAGGTAACGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGAT
710750 GAAATAACGA
Statistics
Matches: 108, Mismatches: 19, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
78 1 0.01
79 107 0.99
ACGTcount: A:0.28, C:0.17, G:0.31, T:0.24
Consensus pattern (79 bp):
CGGGGTTGGAGTATCCCCTTGGAAATAACGGGGTTGGAGTATCCCCGATTATGAGAAATCAATAT
TTAGAAAAAAAAAC
Found at i:710757 original size:28 final size:28
Alignment explanation
Indices: 710701--710777 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
710691 GGAATAAAGC
*** **
710701 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
710729 CGGGGTTGGAGTATCCCCGATGAAATAA
1 CGGGGTTGGAGTATCCCCGATGAAATAA
* *
710757 CGAGGTTGGAGTATCCTCGAT
1 CGGGGTTGGAGTATCCCCGAT
710778 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.22, C:0.19, G:0.35, T:0.23
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAAATAA
Found at i:710830 original size:52 final size:51
Alignment explanation
Indices: 710760--710981 Score: 228
Period size: 52 Copynumber: 4.3 Consensus size: 51
710750 GAAATAACGA
* *
710760 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTGTTTTTGGAAATAAAATCAG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTG-TTTTGGAAATAAAATCAG
* * * * *
710812 AGTTGGAGTATCCCCGATTAAAGGAAAATTGGTGTTTTGAAAATAAAACCAG
1 GGTTGGAGTATCCCCGATT-ATGAAAAATTGGTGTTTTGGAAATAAAATCAG
* * * * **
710864 GGTTGGAGTATCCCCGATTGTGGAAAAATTAGTGTTTTAGTAATAAAATTGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTGGTGTTTTGGAAATAAAATCAG
* *** * ** *
710916 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAATCAG
710967 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
710982 TCGGAGGTAA
Statistics
Matches: 140, Mismatches: 28, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
51 36 0.26
52 93 0.66
53 11 0.08
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.31
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTGGTGTTTTGGAAATAAAATCAG
Found at i:711027 original size:27 final size:28
Alignment explanation
Indices: 710964--711039 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
710954 GAAATAAAGC
***
710964 CGGGGTTGGAGTATCCCCTCGGAGGTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
* *
710992 CGAGGTTGGAGTATCCCCGATGA-TTAA
1 CGGGGTTGGAGTATCCCCGATGAGGTAA
711019 CGGGGTTGGAGTATCCCCGAT
1 CGGGGTTGGAGTATCCCCGAT
711040 TGTGAAAAAT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
27 23 0.55
28 19 0.45
ACGTcount: A:0.20, C:0.21, G:0.36, T:0.24
Consensus pattern (28 bp):
CGGGGTTGGAGTATCCCCGATGAGGTAA
Found at i:713534 original size:13 final size:13
Alignment explanation
Indices: 713516--713541 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
713506 CAAAGAATAG
713516 ATGTATCGATACA
1 ATGTATCGATACA
713529 ATGTATCGATACA
1 ATGTATCGATACA
713542 CAGAAAAATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:713687 original size:21 final size:21
Alignment explanation
Indices: 713661--713779 Score: 186
Period size: 21 Copynumber: 5.7 Consensus size: 21
713651 GTTGGGACCC
**
713661 TGTATCGATACATT-AGTAGAA
1 TGTATCGATACATTCAACA-AA
713682 TGTATCGATACATTCAACAAA
1 TGTATCGATACATTCAACAAA
713703 TGTATCGATACATTCAACAAA
1 TGTATCGATACATTCAACAAA
713724 TGTATCGATACATTCAACAAA
1 TGTATCGATACATTCAACAAA
* *
713745 TGTATCGATACATTCTATAAA
1 TGTATCGATACATTCAACAAA
713766 TGTATCGATACATT
1 TGTATCGATACATT
713780 TGGATAAAAA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
21 91 0.98
22 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.12, T:0.33
Consensus pattern (21 bp):
TGTATCGATACATTCAACAAA
Found at i:714510 original size:42 final size:42
Alignment explanation
Indices: 714448--714543 Score: 113
Period size: 43 Copynumber: 2.3 Consensus size: 42
714438 CCATTTTCCA
*
714448 AGGACAAAGAAAAAAGGGAAACGAAA-TACATCCTGCTCTCTG
1 AGGACAAA-AAAAAAGGGAAAAGAAAGTACATCCTGCTCTCTG
* ** *
714490 AGGACAAAAAAAAAGAGGAAAATAAAGTGTATCCTGCTCTTTG
1 AGGACAAAAAAAAAG-GGAAAAGAAAGTACATCCTGCTCTCTG
*
714533 AGGACTAAAAA
1 AGGACAAAAAA
714544 GTGCCACCAA
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
41 7 0.15
42 16 0.35
43 23 0.50
ACGTcount: A:0.48, C:0.15, G:0.21, T:0.17
Consensus pattern (42 bp):
AGGACAAAAAAAAAGGGAAAAGAAAGTACATCCTGCTCTCTG
Found at i:714596 original size:26 final size:26
Alignment explanation
Indices: 714567--714656 Score: 83
Period size: 26 Copynumber: 3.3 Consensus size: 26
714557 GTGTGGGCTT
*
714567 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTCCTCTTTGAGGAC
* * * *
714593 TGAAAGGTG-CCACCAACTTATGTGGGC
1 TGAAAGGTGTCCTCC-TCTT-TGAGGAC
*
714620 TTTGAAAGGTGTCCTCCTCTTTGGGGAC
1 --TGAAAGGTGTCCTCCTCTTTGAGGAC
714648 TGAAAGGTG
1 TGAAAGGTG
714657 CCACCAACTT
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
25 3 0.06
26 21 0.42
27 5 0.10
28 5 0.10
29 12 0.24
30 4 0.08
ACGTcount: A:0.21, C:0.19, G:0.31, T:0.29
Consensus pattern (26 bp):
TGAAAGGTGTCCTCCTCTTTGAGGAC
Found at i:714605 original size:55 final size:55
Alignment explanation
Indices: 714521--716090 Score: 1624
Period size: 55 Copynumber: 27.4 Consensus size: 55
714511 ATAAAGTGTA
** * *
714521 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
714576 TCCTGCTCTTTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
714631 TCCTCCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
714686 TCCTGCTCTTAGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * * *
714747 TCCTTCTCTTTGAAGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
714802 TCCTGCTCTTTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* *
714858 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
714913 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* *
714974 TCCTACTCTTTGAGGACT-GAAATGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTGAA-AGGCG
* * *
715029 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
715084 TCCTGCTCTTTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCG
* * * * * *
715145 TCCTACTCTTTGAGGACTAGAAAATGCCACCAACTTCTGTGGACTTTGAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
715200 TCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * *
715255 TCTTGCTTTTTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
715316 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
715371 TCCTGCTCTTTGAGGACTAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
715427 TCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * * *
715488 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* *
715543 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGTTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * * * *
715598 TCTTGCTCTTTGAGGACTGGGAAGTGTCACCAACTTATGTGGGCTTTAAAGAGAGAAGGTG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * *
715659 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
715714 TCCTGCTTTTTGAGGGCTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
* * *
715769 TCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* * * *
715830 TCCTACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAGGCA
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
*
715885 TCCTGCTCTTTGAGGACTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGGG
1 TCCTGCTCTTTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCG
* *
715946 TCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT-----G-AAAGGCG
* *
716007 TCCTGCTTTTTGAGGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAAGGCG
1 TCCTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-----G---AAAGGCG
716069 TCCTGCTCTTTGAGGACTGGAA
1 TCCTGCTCTTTGAGGACTGGAA
716091 GGGCTAAAAG
Statistics
Matches: 1332, Mismatches: 110, Indels: 137
0.84 0.07 0.09
Matches are distributed among these distances:
54 17 0.01
55 694 0.52
56 136 0.10
57 2 0.00
59 6 0.00
60 45 0.03
61 400 0.30
62 30 0.02
64 2 0.00
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (55 bp):
TCCTGCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCG
Found at i:714685 original size:29 final size:27
Alignment explanation
Indices: 714595--714732 Score: 81
Period size: 26 Copynumber: 5.0 Consensus size: 27
714585 TTGAGGACTG
714595 AAAGGTGCCACCAACTTATGTGGGCTTT
1 AAAGGTGCCACCAACTT-TGTGGGCTTT
* * *
714623 GAAAGGTGTCCTCC-TCTTTG-GGGAC-TG
1 -AAAGGTG-CCACCAACTTTGTGGG-CTTT
714650 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTT-TGTGGGCTTT
** * * *
714678 AAGAGGTGTCCTGC-TCTTAG-GGGAC-TG
1 AA-AGGTG-CCACCAACTTTGTGGG-CTTT
714705 AAAGGTGCCACCAACTTGTGTGGGCTTT
1 AAAGGTGCCACCAACTT-TGTGGGCTTT
714733 GAAAAGAAAA
Statistics
Matches: 80, Mismatches: 16, Indels: 27
0.65 0.13 0.22
Matches are distributed among these distances:
25 7 0.09
26 18 0.22
27 15 0.19
28 15 0.19
29 18 0.22
30 7 0.09
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (27 bp):
AAAGGTGCCACCAACTTTGTGGGCTTT
Found at i:714711 original size:26 final size:26
Alignment explanation
Indices: 714567--714711 Score: 73
Period size: 26 Copynumber: 5.3 Consensus size: 26
714557 GTGTGGGCTT
* * *
714567 TGAAAGGTGTCCTGCTCTTTGAGGAC
1 TGAAAGGTGTCCTCCTCTTAGGGGAC
* *
714593 TGAAAGGTG-CCACCAACTTATGTGGG-C
1 TGAAAGGTGTCCTCC-TCTTA-G-GGGAC
*
714620 TTTGAAAGGTGTCCTCCTCTTTGGGGAC
1 --TGAAAGGTGTCCTCCTCTTAGGGGAC
* * *
714648 TGAAAGGTG-CCACCAACTT-GTGTGGGC
1 TGAAAGGTGTCCTCC-TCTTAG-G-GGAC
* *
714675 TTTAAGAGGTGTCCTGCTCTTAGGGGAC
1 -TGAA-AGGTGTCCTCCTCTTAGGGGAC
714703 TGAAAGGTG
1 TGAAAGGTG
714712 CCACCAACTT
Statistics
Matches: 88, Mismatches: 17, Indels: 28
0.66 0.13 0.21
Matches are distributed among these distances:
25 8 0.09
26 30 0.34
27 11 0.12
28 10 0.11
29 21 0.24
30 8 0.09
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.28
Consensus pattern (26 bp):
TGAAAGGTGTCCTCCTCTTAGGGGAC
Found at i:714803 original size:171 final size:167
Alignment explanation
Indices: 714520--716056 Score: 1786
Period size: 171 Copynumber: 9.0 Consensus size: 167
714510 AATAAAGTGT
* * *
714520 ATCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * *
714585 TTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTT-GA-AAGGTGTCCTCCTCTTTGGGGA
66 TTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTTAAAGAAGGCGTCCTGCTCTTTGAGGA
* *
714647 CT-GAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGT
130 CTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
714685 GTCCTGCTCTTAGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATC
1 ATCCTGCTCTTTGAGGACTAGAAA-GTGCCACCAACTTGTGTGGGCTTTG-AAAG-----GCGTC
* * * * *
714749 CTTCTCTTTGAAGACT-AAAAGGTGCCACCAACTTGTGTGGGCTTT-AAG-AGGTGTCCTGCTCT
59 CTGCTCTTTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTTAAAGAAGGCGTCCTGCTCT
* * *
714811 TTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGT
123 TTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
714857 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * * *
714922 TTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTG
66 TTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTT--AAAG--AAGGCGTCCTGCTCTTTG
* *
714986 AGGACT-GAAATGTGCCACCAACTTGTGTGGGCTTTAAGAGGT
126 AGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * * *
715028 GTCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGTGTCCTGCTCT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * * * *
715093 TTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCTACTCTTTG
66 TTGAGGACTGGAAA-GTGCCACCAACTTATGTGGGCTTT--AAAG--AAGGCGTCCTGCTCTTTG
* * * * *
715157 AGGACTAGAAAATGCCACCAACTTCTGTGGACTTTGAAAGGC
126 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * * *
715199 ATCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCTTGCTTT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
*
715264 TTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCGTCCTGCTCTTTGA
66 TTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTT-AA---AGAAGGCGTCCTGCTCTTTGA
*
715329 GGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
127 GGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
*
715370 ATCCTGCTCTTTGAGGACTAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
1 ATCCTGCTCTTTGAGGACTA-GAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTC
* *
715435 TTTAAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCGTCCTGCTCTTTG
65 TTTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTT-AA---AGAAGGCGTCCTGCTCTTTG
* *
715500 AGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGC
126 AGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * *
715542 ATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGTTTTAAAAGGCGTCTTGCTCT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* * *
715607 TTGAGGACTGGGAAGTGTCACCAACTTATGTGGGCTTTAAAGAGAGAAGGTGTCCTGCTCTTTGA
66 TTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTT--A-A-AGAAGGCGTCCTGCTCTTTGA
*
715672 GGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
127 GGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* * * * *
715713 ATCCTGCTTTTTGAGGGCTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCGTCTTGCTCT
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
* *
715778 TTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCGTCCTACTCTTTGA
66 TTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTT-AA---AGAAGGCGTCCTGCTCTTTGA
* *
715843 GGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAGGC
127 GGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
* *
715884 ATCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGGGTCC
1 ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTT-----GA-AAGGCGTCC
* * *
715949 TGCTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCGTCCTGCT
60 TGCTCTTTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTT-AAA-G--AAGGCGTCCTGCT
* *
716014 TTTTGAGGACT--AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAA
121 CTTTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAA
716057 AGAAAAAAGG
Statistics
Matches: 1247, Mismatches: 89, Indels: 61
0.89 0.06 0.04
Matches are distributed among these distances:
164 3 0.00
165 40 0.03
166 48 0.04
169 4 0.00
170 5 0.00
171 764 0.61
172 271 0.22
173 7 0.01
174 1 0.00
175 3 0.00
176 27 0.02
177 74 0.06
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.28
Consensus pattern (167 bp):
ATCCTGCTCTTTGAGGACTAGAAAGTGCCACCAACTTGTGTGGGCTTTGAAAGGCGTCCTGCTCT
TTGAGGACTGGAAAGTGCCACCAACTTATGTGGGCTTTAAAGAAGGCGTCCTGCTCTTTGAGGAC
TGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGC
Found at i:714805 original size:116 final size:110
Alignment explanation
Indices: 714521--716090 Score: 1611
Period size: 116 Copynumber: 13.7 Consensus size: 110
714511 ATAAAGTGTA
* * * *
714521 TCCTGCTCTTTGAGGACTAAAAAGTGCCACCAACTCGTGTGGGCTTTGAA-AGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* * *
714585 TTGAGGACT-GAAAGGTGCCACCAACTTATGTGGGCTTTGAAAGGTG
65 TTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
714631 TCCTCCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* * *
714695 TAGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
65 TTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG-----GCG
* * * *
714747 TCCTTCTCTTTGAAGACTAAAAGGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* * *
714811 TTGAGGACTAGAAAGGTGCCACCAACTTGTGTGGGCTTTAAGAGGTG
65 TTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
714858 TCCTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
714922 TTGGGGACT-GAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCA
65 TTGAGGACTGGAAA-GTGCCACCAACTTGTGTGGGCTTT-AAAAG-----GCG
* *
714974 TCCTACTCTTTGAGGACTGAAATGTGCCACCAACTTGTGTGGGCTTT-AAGAGGTGTCCTGCTCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* * * *
715038 TTGAGGACTGGAAAATGCCACCAACTTGTGTGAGCTTTGAAAGGTG
65 TTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
715084 TCCTGCTCTTTGGGGACTGAAAGGTGCCACCAACTTGTGTGGGCTTTGAAAAGAAAAAGCATCCT
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT--AAAG---AGGCGTCCT
* * * * * * *
715149 ACTCTTTGAGGACTAGAAAATGCCACCAACTTCTGTGGACTTTGAAAGGCA
60 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * * * *
715200 TCTTGCTCTTTGAGGACTGGAAAATGCCACCAACTTGTGTGGGCTTTGAA-AGGCGTCTTGCTTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
715264 TTGAGGACTGGAAAATGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCG
65 TTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT--A---A-AAGGCG
* *
715316 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAA-AGGCATCCTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* *
715380 TTGAGGACTAGGAAAATGCCACCAACTTGTGTGGGCTTTGAAAGGCG
65 TTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
715427 TCCTGCTCTTTAAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-AA---AG-AGGCGTCCT
* * *
715492 GCTCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAAGGCA
60 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
715543 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGTTTTAAA-AGGCGTCTTGCTCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
* * * *
715607 TTGAGGACTGGGAAGTGTCACCAACTTATGTGGGCTTTAAAGAGAGAAGGTG
65 TTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT----A-A-AAGGCG
* * *
715659 TCCTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAA-AGGCATCCTGCTTT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCT
*
715723 TTGAGGGCTAGG-AAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
65 TTGAGGACT-GGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* * *
715769 TCTTGCTCTTTGAGGACTGGGAAGTGCCACCAACTTATGTGGGCTTTAAAGGGAGAAGGCGTCCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT-AA---AG-AGGCGTCCT
* * * *
715834 ACTCTTTGAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTCAAAGGCA
60 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
* *
715885 TCCTGCTCTTTGAGGACTAGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAGAAGGGGTCCT
1 TCCTGCTCTTTGAGGACT-GAAAGTGCCACCAACTTGTGTGGGCTTT--AA--AG-AGGCGTCCT
* *
715950 GCTCTTTAAGGACTGGGAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGAAAAGGCG
60 GCTCTTTGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTT------AAAAGGCG
* *
716007 TCCTGCTTTTTGAGGACT-AAAGGTGCCACCAGCTTGTGTGGGCTTTAAAAAGAAAAAAGGCGTC
1 TCCTGCTCTTTGAGGACTGAAA-GTGCCACCAACTTGTGTGGGCTTT--AAAG-----AGGCGTC
716071 CTGCTCTTTGAGGACTGGAA
58 CTGCTCTTTGAGGACTGGAA
716091 GGGCTAAAAG
Statistics
Matches: 1276, Mismatches: 118, Indels: 119
0.84 0.08 0.08
Matches are distributed among these distances:
109 5 0.00
110 306 0.24
111 124 0.10
112 10 0.01
113 3 0.00
114 4 0.00
115 17 0.01
116 636 0.50
117 92 0.07
119 2 0.00
120 2 0.00
121 27 0.02
122 23 0.02
123 25 0.02
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (110 bp):
TCCTGCTCTTTGAGGACTGAAAGTGCCACCAACTTGTGTGGGCTTTAAAGAGGCGTCCTGCTCTT
TGAGGACTGGAAAGTGCCACCAACTTGTGTGGGCTTTAAAAGGCG
Found at i:722354 original size:28 final size:29
Alignment explanation
Indices: 722309--722363 Score: 85
Period size: 28 Copynumber: 1.9 Consensus size: 29
722299 TCGATGATTA
722309 GAAAAAAATCGGGATTGGAGTATCCCCTT
1 GAAAAAAATCGGGATTGGAGTATCCCCTT
* *
722338 GAAAATAA-CGGGGTTGGAGTATCCCC
1 GAAAAAAATCGGGATTGGAGTATCCCC
722364 AATTATGAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 17 0.71
29 7 0.29
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.22
Consensus pattern (29 bp):
GAAAAAAATCGGGATTGGAGTATCCCCTT
Found at i:722677 original size:51 final size:51
Alignment explanation
Indices: 722456--722677 Score: 264
Period size: 52 Copynumber: 4.3 Consensus size: 51
722446 GAAATAACGA
* * * **
722456 GGTTGGAGTATCCTCGATTGTGAAAAATTGGTATTTTTGGAAATAAAATTGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTA-TTTTGGAAATAAAACCGG
* ** * *
722508 AGTTGGAGTATCCCCGATTAAAAGAAAATTGGTATTTTGAAAATAAAACCGG
1 GGTTGGAGTATCCCCGATTATGA-AAAATTAGTATTTTGGAAATAAAACCGG
* * *
722560 GGTTGGAGTATCCCCGATTATGGAAAAATTAGTGTTTTAGCAATAAAACCGG
1 GGTTGGAGTATCCCCGATTAT-GAAAAATTAGTATTTTGGAAATAAAACCGG
* * * *
722612 GGTTGGAGTATCCCCGATTATGAGAAATCAATATTTTGGAAATAAAGCCGG
1 GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
722663 GGTTGGAGTATCCCC
1 GGTTGGAGTATCCCC
722678 TCGGAGGTAA
Statistics
Matches: 145, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
51 38 0.26
52 96 0.66
53 11 0.08
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (51 bp):
GGTTGGAGTATCCCCGATTATGAAAAATTAGTATTTTGGAAATAAAACCGG
Found at i:726787 original size:3 final size:3
Alignment explanation
Indices: 726779--726817 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
726769 TCTAGAGGTA
726779 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
726818 TGGAATAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:732082 original size:20 final size:21
Alignment explanation
Indices: 732033--732082 Score: 52
Period size: 20 Copynumber: 2.4 Consensus size: 21
732023 TGTAAGTGAT
732033 TAATATATTTATGTTATGTTTA
1 TAATAT-TTTATGTTATGTTTA
732055 T-ATAATTTTATG-TAT-TATTA
1 TAAT-ATTTTATGTTATGT-TTA
732075 TAATATTT
1 TAATATTT
732083 AAAGTATTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 1 0.04
20 11 0.44
21 10 0.40
22 3 0.12
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (21 bp):
TAATATTTTATGTTATGTTTA
Found at i:732123 original size:16 final size:18
Alignment explanation
Indices: 732088--732127 Score: 57
Period size: 16 Copynumber: 2.3 Consensus size: 18
732078 TATTTAAAGT
732088 ATTTAAAAATATATATATA
1 ATTT-AAAATATATATATA
732107 ATTTAAAATAT-TA-ATA
1 ATTTAAAATATATATATA
732123 ATTTA
1 ATTTA
732128 TGTTATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
17 2 0.10
18 7 0.33
19 4 0.19
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
ATTTAAAATATATATATA
Found at i:732169 original size:16 final size:17
Alignment explanation
Indices: 732137--732174 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
732127 ATGTTATATA
732137 ATTTTTTGTATATTTAT
1 ATTTTTTGTATATTTAT
* *
732154 GTTTTTTTTATA-TTAT
1 ATTTTTTGTATATTTAT
732170 ATTTT
1 ATTTT
732175 AAAAAAAATT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (17 bp):
ATTTTTTGTATATTTAT
Found at i:732966 original size:11 final size:10
Alignment explanation
Indices: 732918--732975 Score: 50
Period size: 11 Copynumber: 5.7 Consensus size: 10
732908 ACATATAAAA
732918 ATTT-AATTT
1 ATTTAAATTT
732927 ATTTGATAATTT
1 ATTT-A-AATTT
*
732939 A--TAAATTA
1 ATTTAAATTT
732947 ATTTAAAATTT
1 ATTT-AAATTT
732958 ATATTAAATTT
1 AT-TTAAATTT
732969 ATTTAAA
1 ATTTAAA
732976 AAATTAAAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
8 5 0.12
9 5 0.12
10 7 0.17
11 15 0.38
12 8 0.20
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (10 bp):
ATTTAAATTT
Found at i:733066 original size:123 final size:124
Alignment explanation
Indices: 732855--733083 Score: 308
Period size: 123 Copynumber: 1.9 Consensus size: 124
732845 ATTGATTCGT
*
732855 TTAAAAAATTTATATTATTAATTATTTTTAATTTTAATTTTATATTTAATTATACATATAAAAAT
1 TTAAAAAATTTATATTATTAATTATTTTTAATTTTAATTTTATATTTAATTATACATATAAAAAA
**
732920 TTAATTTATTTGATAATTTATAAATTAATTTAAAATTTATATTAAATTTATTTAAAAAA
66 TTAATTTATTCAATAATTTATAAATTAATTTAAAATTTATATTAAATTTATTTAAAAAA
* * * *
732979 TTAAAAAGA-TTATTTTATTAATTATATTTTATTTTTAATATTTA-ATTTTTATT-TTC-T-TAA
1 TTAAAAA-ATTTATATTATTAATTAT-TTTTAATTTTAAT-TTTATA-TTTAATTATACATATAA
733039 AAAATTAATTT-TTACAATAATTTATAAATTAATTTAAAATTTATA
62 AAAATTAATTTATT-CAATAATTTATAAATTAATTTAAAATTTATA
733084 ATCGATTCGC
Statistics
Matches: 93, Mismatches: 7, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
122 2 0.02
123 42 0.45
124 23 0.25
125 16 0.17
126 10 0.11
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.54
Consensus pattern (124 bp):
TTAAAAAATTTATATTATTAATTATTTTTAATTTTAATTTTATATTTAATTATACATATAAAAAA
TTAATTTATTCAATAATTTATAAATTAATTTAAAATTTATATTAAATTTATTTAAAAAA
Found at i:733661 original size:181 final size:183
Alignment explanation
Indices: 733337--733682 Score: 448
Period size: 181 Copynumber: 1.9 Consensus size: 183
733327 TTAAATTTAG
*
733337 TTATTATTAATGAAAAATGATTTTAAATTAAATCTTATTAAACAATAAGTATGTTTTTAAATTTT
1 TTATTATTAATGAAAAATAATTTTAAATTAAATCTTATTAAACAATAAGTATGTTTTTAAATTTT
* ** * * *
733402 ATATTTAAAATTAAGTACGAATTTTAAATTAATTAGTGAGTTAACATGAAGATTAATTATTTTAA
66 ATATTTAAAATTAAGTACGAATTTTAAATCAATTAGCAAGTCAACATGAAGATCAATTACTTTAA
*
733467 ATGCATCATTTAAAAATAAATAAAAATAATTAATACAATTTTTTAATTTTAAT
131 ATACATCATTTAAAAATAAATAAAAATAATTAATACAATTTTTTAATTTTAAT
* * * * **
733520 TTATTTTTAAT-AAAAATAATTTTAAATTAAATTTTATTTAATAATATTTAT-TTATTTAAA-TT
1 TTATTATTAATGAAAAATAATTTTAAATTAAATCTTATTAAACAATAAGTATGTT-TTTAAATTT
* * * * * *
733582 TATATTTAAAATTGAGTACGGATTTTAAATCGATTCGCAAGTCAACGT-ACGAATCAATTACTTT
65 TATATTTAAAATTAAGTACGAATTTTAAATCAATTAGCAAGTCAACATGAAG-ATCAATTACTTT
* *
733646 AAATATATTATTTAAAAATAAATAAAAATAATTAATA
129 AAATACATCATTTAAAAATAAATAAAAATAATTAATA
733683 AAATAAATTT
Statistics
Matches: 139, Mismatches: 22, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
180 2 0.01
181 87 0.63
182 40 0.29
183 10 0.07
ACGTcount: A:0.46, C:0.05, G:0.06, T:0.44
Consensus pattern (183 bp):
TTATTATTAATGAAAAATAATTTTAAATTAAATCTTATTAAACAATAAGTATGTTTTTAAATTTT
ATATTTAAAATTAAGTACGAATTTTAAATCAATTAGCAAGTCAACATGAAGATCAATTACTTTAA
ATACATCATTTAAAAATAAATAAAAATAATTAATACAATTTTTTAATTTTAAT
Found at i:734018 original size:17 final size:16
Alignment explanation
Indices: 733992--734023 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
733982 TCTTTAATTA
733992 ATATTTTTTATTTTAT
1 ATATTTTTTATTTTAT
734008 ATATATTTTTATTTTA
1 ATAT-TTTTTATTTTA
734024 AAAACAATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (16 bp):
ATATTTTTTATTTTAT
Found at i:734680 original size:151 final size:151
Alignment explanation
Indices: 734416--734696 Score: 400
Period size: 151 Copynumber: 1.9 Consensus size: 151
734406 TTAGTTATTC
*
734416 TAATAATAAAATTAAAAACTATAAAAGTGAGATTAAATATTGAAGACTGAGATTAAAATCAATGA
1 TAATAATAAAATTAAAAACTATAAAAGTGAGATTAAATATTGAAGACTGAGATTAAAATCAATAA
* * * *
734481 TAAGATATATATTTAGTTACAAAAACTATCATGGCAATGAGATGAATTATAATGAGAACTATTAA
66 TAAAATATATATTTAGATACAAAAACTATCATGGCAATGAGATAAATTACAATGAGAACTATTAA
734546 TAGTATTAGTGGTGAGATATG
131 TAGTATTAGTGGTGAGATATG
* * * *
734567 TAATAATAAAATTAAAAATTATAAAAGTGAGATTAAGTATTGAAGATTGAGATTCAAATCAATAA
1 TAATAATAAAATTAAAAACTATAAAAGTGAGATTAAATATTGAAGACTGAGATTAAAATCAATAA
* ** * * * ** *
734632 TAAAATATATGTTTAGATGTAAAAATTGTCATGTCTGTGAGGTAAATTACAATGAGAACTATTAA
66 TAAAATATATATTTAGATACAAAAACTATCATGGCAATGAGATAAATTACAATGAGAACTATTAA
734697 AAATATTATA
Statistics
Matches: 112, Mismatches: 18, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
151 112 1.00
ACGTcount: A:0.48, C:0.05, G:0.15, T:0.32
Consensus pattern (151 bp):
TAATAATAAAATTAAAAACTATAAAAGTGAGATTAAATATTGAAGACTGAGATTAAAATCAATAA
TAAAATATATATTTAGATACAAAAACTATCATGGCAATGAGATAAATTACAATGAGAACTATTAA
TAGTATTAGTGGTGAGATATG
Found at i:734710 original size:14 final size:14
Alignment explanation
Indices: 734691--734739 Score: 53
Period size: 14 Copynumber: 3.3 Consensus size: 14
734681 CAATGAGAAC
734691 TATTAAAAATATTA
1 TATTAAAAATATTA
*
734705 TATTAAAATTTATTTA
1 TATTAAAA-ATA-TTA
*
734721 TTATTAAAAATAATA
1 -TATTAAAAATATTA
734736 TATT
1 TATT
734740 TGTGCAAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
14 12 0.41
15 4 0.14
16 5 0.17
17 8 0.28
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (14 bp):
TATTAAAAATATTA
Found at i:734797 original size:17 final size:18
Alignment explanation
Indices: 734769--734802 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
734759 CAAAAATAAT
734769 ATTTATTTTTTATTATCA
1 ATTTATTTTTTATTATCA
734787 ATTTA-TTTTTATTATC
1 ATTTATTTTTTATTATC
734803 TTTTATAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.26, C:0.06, G:0.00, T:0.68
Consensus pattern (18 bp):
ATTTATTTTTTATTATCA
Found at i:738406 original size:20 final size:21
Alignment explanation
Indices: 738378--738451 Score: 91
Period size: 20 Copynumber: 3.7 Consensus size: 21
738368 AAAAGACATA
*
738378 ATGTATCGATACATTGCAGA-
1 ATGTATCGATACATTGCAAAC
* *
738398 ATATATCGATACATT-CATAC
1 ATGTATCGATACATTGCAAAC
*
738418 ATGTATCGATATATTG-AAAC
1 ATGTATCGATACATTGCAAAC
738438 ATGTATCGATACAT
1 ATGTATCGATACAT
738452 GTGGGTAAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.07
20 43 0.93
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34
Consensus pattern (21 bp):
ATGTATCGATACATTGCAAAC
Found at i:738445 original size:40 final size:39
Alignment explanation
Indices: 738374--738451 Score: 104
Period size: 40 Copynumber: 2.0 Consensus size: 39
738364 GGTAAAAAGA
*
738374 CATAATGTATCGATACATTGCAGAATATATCGATACATT
1 CATAATGTATCGATACATTGCAAAATATATCGATACATT
* *
738413 CATACATGTATCGATATATTG-AAACATGTATCGATACAT
1 CATA-ATGTATCGATACATTGCAAA-ATATATCGATACAT
738452 GTGGGTAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 6 0.18
40 28 0.82
ACGTcount: A:0.38, C:0.15, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGCAAAATATATCGATACATT
Found at i:739141 original size:57 final size:57
Alignment explanation
Indices: 738994--739510 Score: 543
Period size: 57 Copynumber: 9.0 Consensus size: 57
738984 TTGCTGGGAA
* * * * *
738994 AAAATGTGCCACTAACTTGTGTAGGCTTTGAAAAAAGTTGCCACCGACACGTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTG--GGCTTTGAAAAGAG-TGCCACTG--ACTTGTGGGCTTTG
* * * * * * *
739056 AAGAGAGTTACTACTGGCTTGTGGGCTTTGAAAAGAGTGTCATTGACTTGTGGGATTTG
1 AA-A-AGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
* * *
739115 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAGGA-TGCCACTAACTTGTAGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
* *
739171 AAAAAGTGCCACTGACTTGTGGGC-TTGAAAA-AGTGCCACTGACTTATGGGCTTT-
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
* * *
739225 AAAAGAGTGCCACTGACTCGTGGGTTTTGAAAGGA-TGCCACTGACTTGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
* * * *
739282 -AAAGAGTGTCACTGACTCGTGGGCTTTGAAAA-AGGTGCCATTGACTCGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGA-GTGCCACTGACTTGTGGGCTTTG
* * *
739339 AAAAGGTGCCATTGACTTGCGTGGGCTTTGAAAGGA-TGCCACTAACTTGTGGG-TTTG
1 AAAAGGTGCCACTGACTT--GTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
* *
739396 -AAAGAGTGCCACTGACTCGTGGGCTTTGAAAA-AGGTGCCACTGACTCGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTGAAAAGA-GTGCCACTGACTTGTGGGCTTTG
** *
739453 AAAAGGTGCCACTGACTTGCAGGCTTTGAAAAGAGTGCCACTAACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
739510 A
1 A
739511 GAGGGATGAA
Statistics
Matches: 382, Mismatches: 54, Indels: 43
0.80 0.11 0.09
Matches are distributed among these distances:
54 6 0.02
55 55 0.14
56 114 0.30
57 122 0.32
58 24 0.06
59 27 0.07
60 1 0.00
61 5 0.01
62 15 0.04
63 1 0.00
64 12 0.03
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (57 bp):
AAAAGGTGCCACTGACTTGTGGGCTTTGAAAAGAGTGCCACTGACTTGTGGGCTTTG
Found at i:739142 original size:28 final size:28
Alignment explanation
Indices: 738994--739510 Score: 528
Period size: 28 Copynumber: 18.0 Consensus size: 28
738984 TTGCTGGGAA
* *
738994 AAAATGTGCCACTAACTTGTGTAGGCTTTG
1 AAAAGGTGCCACTGACTTGTG--GGCTTTG
* * *
739024 AAAAAAGTTGCCACCGACACGTGTGGGCTTTG
1 --AAAAGGTGCCACTG--ACTTGTGGGCTTTG
* * * *
739056 AAGAGAGTTACTACTGGCTTGTGGGCTTTG
1 AA-A-AGGTGCCACTGACTTGTGGGCTTTG
* * *
739086 AAAAGAGTGTCATTGACTTGTGGGATTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
739115 AAAAGGTGCCACTGACTTGTGGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
739143 -AAAGGATGCCACTAACTTGTAGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
*
739171 AAAAAGTGCCACTGACTTGTGGGC-TTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
739198 AAAAAGTGCCACTGACTTATGGGCTTT-
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
* *
739225 AAAAGAGTGCCACTGACTCGTGGGTTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
739254 -AAAGGATGCCACTGACTTGTGGGCTTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
* *
739282 -AAAGAGTGTCACTGACTCGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
* *
739310 AAAAAGGTGCCATTGACTCGTGGGCTTTG
1 -AAAAGGTGCCACTGACTTGTGGGCTTTG
*
739339 AAAAGGTGCCATTGACTTGCGTGGGCTTTG
1 AAAAGGTGCCACTGACTT--GTGGGCTTTG
*
739369 -AAAGGATGCCACTAACTTGTGGG-TTTG
1 AAAAGG-TGCCACTGACTTGTGGGCTTTG
*
739396 -AAAGAGTGCCACTGACTCGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
*
739424 AAAAAGGTGCCACTGACTCGTGGGCTTTG
1 -AAAAGGTGCCACTGACTTGTGGGCTTTG
**
739453 AAAAGGTGCCACTGACTTGCAGGCTTTG
1 AAAAGGTGCCACTGACTTGTGGGCTTTG
*
739481 AAAAGAGTGCCACTAACTTGTGGGCTTTG
1 AAAAG-GTGCCACTGACTTGTGGGCTTTG
739510 A
1 A
739511 GAGGGATGAA
Statistics
Matches: 416, Mismatches: 47, Indels: 47
0.82 0.09 0.09
Matches are distributed among these distances:
27 59 0.14
28 184 0.44
29 97 0.23
30 44 0.11
31 1 0.00
32 25 0.06
34 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.30, T:0.28
Consensus pattern (28 bp):
AAAAGGTGCCACTGACTTGTGGGCTTTG
Found at i:740767 original size:20 final size:20
Alignment explanation
Indices: 740744--740781 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
740734 TTTTGCTATT
740744 TTTTCTTGGTTTT-TTTTTAA
1 TTTT-TTGGTTTTGTTTTTAA
*
740764 TTTTTTTGTTTTGTTTTT
1 TTTTTTGGTTTTGTTTTT
740782 TTTTTGGTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 7 0.44
20 9 0.56
ACGTcount: A:0.05, C:0.03, G:0.11, T:0.82
Consensus pattern (20 bp):
TTTTTTGGTTTTGTTTTTAA
Found at i:744637 original size:20 final size:18
Alignment explanation
Indices: 744611--744662 Score: 65
Period size: 15 Copynumber: 2.9 Consensus size: 18
744601 ATTTACCTGC
744611 ATGTATCGATACATTTTA
1 ATGTATCGATACATTTTA
744629 TAGTGTATCGATACA---TA
1 -A-TGTATCGATACATTTTA
744646 ATGTATCGATACATTTT
1 ATGTATCGATACATTTT
744663 TTGGTAGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 12 0.41
16 1 0.03
17 2 0.07
18 1 0.03
19 1 0.03
20 12 0.41
ACGTcount: A:0.33, C:0.12, G:0.13, T:0.42
Consensus pattern (18 bp):
ATGTATCGATACATTTTA
Found at i:744679 original size:35 final size:34
Alignment explanation
Indices: 744611--744691 Score: 94
Period size: 35 Copynumber: 2.4 Consensus size: 34
744601 ATTTACCTGC
*
744611 ATGTATCGATACATTTTATAGTGTATCGATACAT
1 ATGTATCGATACATTTTATAGTGTAGCGATACAT
* * *
744645 AATGTATCGATACATTTTTTGGTAGTAGC-TTACAT
1 -ATGTATCGATACATTTTATAGT-GTAGCGATACAT
744680 -TGTATCGATACA
1 ATGTATCGATACA
744692 AAACTTATGT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
33 12 0.29
35 25 0.61
36 4 0.10
ACGTcount: A:0.31, C:0.12, G:0.16, T:0.41
Consensus pattern (34 bp):
ATGTATCGATACATTTTATAGTGTAGCGATACAT
Found at i:744716 original size:32 final size:32
Alignment explanation
Indices: 744675--744775 Score: 157
Period size: 32 Copynumber: 3.1 Consensus size: 32
744665 GGTAGTAGCT
*
744675 TACATTGTATCGATACAAAACTTATGTCTCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
*
744707 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAAAACTTATGTATCGA
**
744739 TACATTGTATCGATACAACATTTTATGTATCGA
1 TACATTGTATCGATACAA-AACTTATGTATCGA
744772 TACA
1 TACA
744776 AATCGTTGAA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
32 48 0.76
33 15 0.24
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.36
Consensus pattern (32 bp):
TACATTGTATCGATACAAAACTTATGTATCGA
Found at i:744721 original size:13 final size:13
Alignment explanation
Indices: 744703--744755 Score: 52
Period size: 13 Copynumber: 3.6 Consensus size: 13
744693 AACTTATGTC
744703 TCGATACATTGTA
1 TCGATACATTGTA
744716 TCGATACAACACTTATGTA
1 TCGAT---ACA--T-TGTA
744735 TCGATACATTGTA
1 TCGATACATTGTA
744748 TCGATACA
1 TCGATACA
744756 ACATTTTATG
Statistics
Matches: 34, Mismatches: 0, Indels: 12
0.74 0.00 0.26
Matches are distributed among these distances:
13 17 0.50
14 1 0.03
16 6 0.18
18 1 0.03
19 9 0.26
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (13 bp):
TCGATACATTGTA
Found at i:744736 original size:19 final size:18
Alignment explanation
Indices: 744680--744776 Score: 70
Period size: 19 Copynumber: 5.7 Consensus size: 18
744670 TAGCTTACAT
*
744680 TGTATCGATACAAAACTTA
1 TGTATCGATACAACA-TTA
*
744699 TGTCTCGAT---ACA-T-
1 TGTATCGATACAACATTA
744712 TGTATCGATACAACACTTA
1 TGTATCGATACAACA-TTA
744731 TGTATCGAT---ACA-T-
1 TGTATCGATACAACATTA
744744 TGTATCGATACAACATTTTA
1 TGTATCGATACAACA--TTA
744764 TGTATCGATACAA
1 TGTATCGATACAA
744777 ATCGTTGAAA
Statistics
Matches: 62, Mismatches: 3, Indels: 25
0.69 0.03 0.28
Matches are distributed among these distances:
13 17 0.27
14 2 0.03
16 11 0.18
18 1 0.02
19 18 0.29
20 13 0.21
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (18 bp):
TGTATCGATACAACATTA
Found at i:745689 original size:67 final size:68
Alignment explanation
Indices: 745567--745693 Score: 175
Period size: 67 Copynumber: 1.9 Consensus size: 68
745557 ATTGGGTTTT
* * * *
745567 AAAGATGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCAATATTGGACTTAAAGATGAAGATG
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGAAGATG
745632 AGA
66 AGA
* * * *
745635 AAAG-TGATAAAGATGCCAATATGTTGATTCACGACCAACGATATTGGGCTTAAAGATGA
1 AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGA
745694 GAAAAAAGAT
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
67 47 0.92
68 4 0.08
ACGTcount: A:0.39, C:0.13, G:0.24, T:0.24
Consensus pattern (68 bp):
AAAGATGATAAAGATGCCAATATGCTGATTCAAGACCAACAATATTGGACTTAAAGATGAAGATG
AGA
Found at i:745742 original size:55 final size:52
Alignment explanation
Indices: 745643--746706 Score: 493
Period size: 43 Copynumber: 22.6 Consensus size: 52
745633 GAAAAGTGAT
* * * * * * **
745643 AAAGATGCCAATATGTTGATTCACGACCAACGATATTGGGCTTAAAGATGAGAAA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATG-G--A
* *
745698 AAAGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
745750 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
745797 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
745842 GAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
745889 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * **
745935 -AAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----TGG-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * * *
745979 --AGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATGAA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * * **
746029 AAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGGC-T-----TGG-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
746074 --AGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746121 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
746168 ---G-TGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---A
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * * * * * * *
746213 GAAGGTGCTAATATACTAATTCAAGGCCAACGATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746260 ---G-TGCCAATGTGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746301 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAA
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
** * * *
746351 AAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746401 -AAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT---
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746449 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TGG-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * *
746494 --AGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746542 -AAGGTGCCAATATGCTGATTCAAGGCCAGTTATATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* * * *
746588 ---G-TGCCAATGTGCTGACTCAAGGCTAGCTACATTGGACTT-AA-A--G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
* *
746631 ---G-TGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT-G-
1 AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
*
746677 -AAGGTGCCAATATGCTGATTCAAGGCCAGC
1 AAAGATGCCAATATGCTGATTCAAGGCCAGC
746707 GATATTGGGC
Statistics
Matches: 854, Mismatches: 85, Indels: 146
0.79 0.08 0.13
Matches are distributed among these distances:
41 1 0.00
42 2 0.00
43 352 0.41
44 18 0.02
45 4 0.00
46 5 0.01
47 4 0.00
48 16 0.02
49 292 0.34
50 1 0.00
51 3 0.00
52 115 0.13
54 1 0.00
55 40 0.05
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.25
Consensus pattern (52 bp):
AAAGATGCCAATATGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
Found at i:745811 original size:43 final size:43
Alignment explanation
Indices: 745750--746724 Score: 879
Period size: 43 Copynumber: 21.1 Consensus size: 43
745740 TAAAGATGGA
745750 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
745793 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
745836 AAAGAAGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
745885 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
745928 AAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 -AA-A-G--G-TGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * * *
745977 GGAGGTGCCAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* * *
746026 GAAAAAGGTGTCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
746072 GGAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
746121 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
746164 AAAGGTGCTAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * * *
746207 AAAGAAGAAGGTGCTAATATACTAATTCAAGGCCAACGATATTGGACTT
1 -----A-AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
746256 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
746299 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
* *
746348 GAAAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 ---AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * *
746394 AAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T
*
746449 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
** * *
746492 GGAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
*
746535 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGTTATATTGGACTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* * * *
746584 AAAGGTGCCAATGTGCTGACTCAAGGCTAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
746627 AAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
* *
746670 AAAGATGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTT
1 ----A--AAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
746719 AGAAGG
1 A-AAGG
746725 GTTGCCACCG
Statistics
Matches: 783, Mismatches: 86, Indels: 125
0.79 0.09 0.13
Matches are distributed among these distances:
43 379 0.48
44 13 0.02
45 3 0.00
46 4 0.01
47 4 0.01
48 5 0.01
49 302 0.39
50 1 0.00
51 3 0.00
52 68 0.09
55 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTT
Found at i:745881 original size:92 final size:92
Alignment explanation
Indices: 745706--746724 Score: 1194
Period size: 92 Copynumber: 11.0 Consensus size: 92
745696 AAAAAGATGT
* *
745706 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA---AGAAGGTGCCAATATGCTGATT
*
745771 CAAGGCCAGCTATATTGGACTTAAAGGTGC
63 CAAGGCCAGCGATATTGGACTTAAAGGTGC
745801 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
*
745866 GGCCAGCTATATTGGACTTAAAGGTGC
66 GGCCAGCGATATTGGACTTAAAGGTGC
* *
745893 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* **
745958 GGCCAGCGATATTGGGCTTGGAGGTGC
66 GGCCAGCGATATTGGACTTAAAGGTGC
* * *
745985 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATGAAAAAGGTGTCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT-AA-A-GAAGAAGGTGCCAATATGCTGATT
* **
746050 CAAGGCCAGCGATATTGGGCTTGGAGGTGC
63 CAAGGCCAGCGATATTGGACTTAAAGGTGC
* *
746080 CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATA-AAGGTGCCAATATGCTGATTCA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGA-AGAAGGTGCCAATATGCTGATTCA
746144 AGGCCAGCGATATTGGACTTAAAGGTGC
65 AGGCCAGCGATATTGGACTTAAAGGTGC
* * * *
746172 TAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCTAATATACTAATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
*
746237 GGCCAACGATATTGGACTTAAAGGTGC
66 GGCCAGCGATATTGGACTTAAAGGTGC
* * *
746264 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * *
746323 GGCCAGCTACATTGGACTTAAAGATGAAAAAGGCGC
66 GGCCAGCGATATTGGAC-T-----T---AAAGGTGC
* * * * *
746359 CAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGAAGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
*
746424 GGCCAGCGACATTGGACTTAAAGATAAAGGTGC
66 GGCCAGCGATATTGGAC-T-----TAAAGGTGC
* * * *
746457 CAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G--G-AGGTGCCAATGTGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* *
746516 GGCCAGCTACATTGGACTTAAAGATGAAGGTGC
66 GGCCAGCGATATTGGACTT----A--AAGGTGC
* * * * *
746549 CAATATGCTGATTCAAGGCCAGTTATATTGGACTT-----A-AAGGTGCCAATGTGCTGACTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
* * *
746608 GGCTAGCTACATTGGACTTAAAGGTGC
66 GGCCAGCGATATTGGACTTAAAGGTGC
*
746635 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGGTGCCAATATGCTGATTCAA
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
*
746700 GGCCAGCGATATTGGGCTTAGAAGG
66 GGCCAGCGATATTGGACTTA-AAGG
746725 GTTGCCACCG
Statistics
Matches: 833, Mismatches: 56, Indels: 72
0.87 0.06 0.07
Matches are distributed among these distances:
86 72 0.09
87 2 0.00
88 1 0.00
89 1 0.00
90 1 0.00
91 2 0.00
92 489 0.59
93 9 0.01
94 3 0.00
95 163 0.20
98 43 0.05
100 1 0.00
101 46 0.06
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (92 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCCAATATGCTGATTCAA
GGCCAGCGATATTGGACTTAAAGGTGC
Found at i:746159 original size:279 final size:272
Alignment explanation
Indices: 745706--746724 Score: 1216
Period size: 279 Copynumber: 3.7 Consensus size: 272
745696 AAAAAGATGT
*
745706 CAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGAAAAGGTGCCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT---G-T-G-AAAGGTGCCAATATGCTGATT
* * *
745771 CAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTT
60 CAAGGCCAGCTACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
745836 AAAGA-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGACTTAAAGGTGCCAATGTG
125 AAAGATA-AAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTG
*
745900 CTGATTCAAGGCCAGCTACATTGGACTTAAAGATGAAGATGCCAATATGCTGATTCAAGGCCAGC
189 CTGATTCAAGGCCAGCTACATTGGACTTAAAGA-GAAGGTGCCAATATGCTGATTCAAGGCCAGC
*
745965 GATATTGGGCTTGGAGGTGC
253 GATATTGGACTTGGAGGTGC
* *
745985 CAATGTGCTGATTCAAGGCCAACTACATTGGACTTAAAGATGAAAAAGGTGTCAATATGCTGATT
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTT---G-TG--AAAGGTGCCAATATGCTGATT
* * * **
746050 CAAGGCCAGCGATATTGGGCTTGGAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
60 CAAGGCCAGCTACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTT
*
746115 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCTAATGTGC
125 AAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGC
* * * *
746180 TGATTCAAGGCCAGCTACATTGGACTTAAAGAAGAAGGTGCTAATATACTAATTCAAGGCCAACG
190 TGATTCAAGGCCAGCTACATTGGACTTAAAG-AGAAGGTGCCAATATGCTGATTCAAGGCCAGCG
**
746245 ATATTGGACTTAAAGGTGC
254 ATATTGGACTTGGAGGTGC
* * *
746264 CAATGTGCTGATTCAAGGCCAGCGATATTGGACTTG-G--AGGTGCCAATGTGCTGATTCAAGGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTGTGAAAGGTGCCAATATGCTGATTCAAGGC
* *
746326 CAGCTACATTGGACTTAAAGATGAAAAAGGCGCCAATATGCTGATTCAAGGCCAGCGATATTGGA
66 CAGCTACATTGGAC-T-----T---AAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGA
* * *
746391 CTTAAAGATGAAGGTGCCAATGTGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAGGTG
122 CTTAAAGATAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGAC-T-----TAAAGGTG
* * * *
746456 CCAATATGCTGATTCAAGGCCAGCGATATTGGACTT---G-G-AGGTGCCAATGTGCTGATTCAA
181 CCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAA
* *
746516 GGCCAGCTACATTGGACTTAAAGATGAAGGTGC
246 GGCCAGCGATATTGGACTT---G--G-AGGTGC
* * * * *
746549 CAATATGCTGATTCAAGGCCAGTTATATTGGAC-T-T-AAAGGTGCCAATGTGCTGACTCAAGGC
1 CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTGTGAAAGGTGCCAATATGCTGATTCAAGGC
* * *
746611 TAGCTACATTGGACTTAAAGGTGCCAATGTGCTGATTCAAGGCCAGCTACATTGGACTTAAAGAT
66 CAGCTACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
* *
746676 GAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGGCTTAGAAGG
131 AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTA-AAGG
746725 GTTGCCACCG
Statistics
Matches: 653, Mismatches: 59, Indels: 64
0.84 0.08 0.08
Matches are distributed among these distances:
270 36 0.06
271 5 0.01
274 1 0.00
275 1 0.00
276 85 0.13
278 1 0.00
279 404 0.62
280 4 0.01
282 1 0.00
284 2 0.00
285 113 0.17
ACGTcount: A:0.31, C:0.18, G:0.26, T:0.25
Consensus pattern (272 bp):
CAATGTGCTGATTCAAGGCCAGCTACATTGGACTTGTGAAAGGTGCCAATATGCTGATTCAAGGC
CAGCTACATTGGACTTAAAGGTGCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT
AAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGGTGCCAATGTGCTGATTC
AAGGCCAGCTACATTGGACTTAAAGAGAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGG
ACTTGGAGGTGC
Found at i:746604 original size:22 final size:22
Alignment explanation
Indices: 746579--746645 Score: 61
Period size: 22 Copynumber: 3.1 Consensus size: 22
746569 AGTTATATTG
746579 GACTTAAAGGTGCCAATGTGCT
1 GACTTAAAGGTGCCAATGTGCT
* *
746601 GAC-TCAAGGCTAGCTACAT-TG--
1 GACTTAAAGG-T-GCCA-ATGTGCT
746622 GACTTAAAGGTGCCAATGTGCT
1 GACTTAAAGGTGCCAATGTGCT
746644 GA
1 GA
746646 TTCAAGGCCA
Statistics
Matches: 34, Mismatches: 4, Indels: 14
0.65 0.08 0.27
Matches are distributed among these distances:
19 2 0.06
20 5 0.15
21 9 0.26
22 11 0.32
23 5 0.15
24 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.25
Consensus pattern (22 bp):
GACTTAAAGGTGCCAATGTGCT
Found at i:746652 original size:21 final size:21
Alignment explanation
Indices: 746585--746652 Score: 52
Period size: 21 Copynumber: 3.2 Consensus size: 21
746575 ATTGGACTTA
*
746585 AAGGTGCCAATGTGCTGACTC
1 AAGGTGCCAATGTGCTGATTC
* *
746606 AAGGCTAGCTACAT-TG--GACTTA
1 AAGG-T-GCCA-ATGTGCTGA-TTC
746628 AAGGTGCCAATGTGCTGATTC
1 AAGGTGCCAATGTGCTGATTC
746649 AAGG
1 AAGG
746653 CCAGCTACAT
Statistics
Matches: 35, Mismatches: 5, Indels: 14
0.65 0.09 0.26
Matches are distributed among these distances:
19 2 0.06
20 5 0.14
21 13 0.37
22 8 0.23
23 5 0.14
24 2 0.06
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (21 bp):
AAGGTGCCAATGTGCTGATTC
Found at i:746765 original size:33 final size:33
Alignment explanation
Indices: 746719--746903 Score: 254
Period size: 33 Copynumber: 5.7 Consensus size: 33
746709 TATTGGGCTT
746719 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* * *
746752 AGAATGATTGCCACCAACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
746785 AG-AGGGTTGCCACCGACTTGTGTGGGCTTT-G
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
746816 AAAAGGGTTGCCATCGACTTGTGTGGGCTTTAG
1 AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
*
746849 ACGAA-GGTTGCCACCGACTTATGTGGGCTTTAG
1 A-GAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
* *
746882 A-AAAGGTTG-CACCAACTTGTGT
1 AGAAGGGTTGCCACCGACTTGTGT
746904 ACTTTTAAAG
Statistics
Matches: 135, Mismatches: 13, Indels: 10
0.85 0.08 0.06
Matches are distributed among these distances:
31 15 0.11
32 57 0.42
33 61 0.45
34 2 0.01
ACGTcount: A:0.21, C:0.18, G:0.32, T:0.29
Consensus pattern (33 bp):
AGAAGGGTTGCCACCGACTTGTGTGGGCTTTAG
Found at i:746796 original size:65 final size:64
Alignment explanation
Indices: 746712--746903 Score: 275
Period size: 65 Copynumber: 3.0 Consensus size: 64
746702 CCAGCGATAT
* *
746712 TGGGC-TTAGA-AGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGATTGCCACCAACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGA-AAAGGTTGCCACCAACTTGTG
* *
746775 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTT-GAAAAGGGTTGCCATCGACTTGTG
1 TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAA-GGTTGCCACCAACTTGTG
* *
746839 TGGGCTTTAGACGAAGGTTGCCACCGACTTATGTGGGCTTTAGAAAAGGTTG-CACCAACTTGTG
1 TGGGCTTTAGA-GAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGTTGCCACCAACTTGTG
746903 T
1 T
746904 ACTTTTAAAG
Statistics
Matches: 116, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
63 7 0.06
64 44 0.38
65 60 0.52
66 5 0.04
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.29
Consensus pattern (64 bp):
TGGGCTTTAGAGAGGGTTGCCACCGACTTGTGTGGGCTTTAGAAAAGGTTGCCACCAACTTGTG
Found at i:746890 original size:97 final size:96
Alignment explanation
Indices: 746721--746903 Score: 278
Period size: 97 Copynumber: 1.9 Consensus size: 96
746711 TTGGGCTTAG
*
746721 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGATTGCCACCAACTTGTGTGGGCTTTAGA
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGATTGCCACCAACTTATGTGGGCTTTAGA
* * *
746786 GAGGGTTGCCACCGACTTGTGTGGGCTTTGAA
66 AAAGGTTG-CACCAACTTGTGTGGGCTTTGAA
* * *
746818 AAGGGTTGCCATCGACTTGTGTGGGCTTTAGACGAA-GGTTGCCACCGACTTATGTGGGCTTTAG
1 AAGGGTTGCCACCGACTTGTGTGGGCTTTAGA-GAATGATTGCCACCAACTTATGTGGGCTTTAG
746882 AAAAGGTTGCACCAACTTGTGT
65 AAAAGGTTGCACCAACTTGTGT
746904 ACTTTTAAAG
Statistics
Matches: 78, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
96 12 0.15
97 63 0.81
98 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.32, T:0.29
Consensus pattern (96 bp):
AAGGGTTGCCACCGACTTGTGTGGGCTTTAGAGAATGATTGCCACCAACTTATGTGGGCTTTAGA
AAAGGTTGCACCAACTTGTGTGGGCTTTGAA
Found at i:746983 original size:30 final size:30
Alignment explanation
Indices: 746773--747061 Score: 207
Period size: 29 Copynumber: 9.6 Consensus size: 30
746763 CACCAACTTG
* *
746773 TGTGGGCTTTAG-AGAGGGTTGCCACCGACTT
1 TGTGGGCTTTAGAAAAGGG-TGCCACTGAC-T
746804 GTGTGGGCTTT-GAAAAGGGTTGCCA-TCGACTT
1 -TGTGGGCTTTAGAAAAGGG-TGCCACT-GAC-T
* * *
746836 GTGTGGGCTTTAGACGAAGGTTGCCACCGACTT
1 -TGTGGGCTTTAGA-AAAGGGTGCCACTGAC-T
* **
746869 ATGTGGGCTTTAGAAAAGGTTG-CACCAACT
1 -TGTGGGCTTTAGAAAAGGGTGCCACTGACT
** * ** *
746899 TGTGTACTTT--TAAAGATTGCCACTAACT
1 TGTGGGCTTTAGAAAAGGGTGCCACTGACT
* * * *
746927 TGTGGGCTTTTGAAGA-GATACCACTGACT
1 TGTGGGCTTTAGAAAAGGGTGCCACTGACT
*
746956 TGTGGGCTTTGGAAAAGGGTGCCACTGACT
1 TGTGGGCTTTAGAAAAGGGTGCCACTGACT
* * *
746986 TGTGGGCTTTGGAAAA-GATGCCACTAACT
1 TGTGGGCTTTAGAAAAGGGTGCCACTGACT
* *
747015 TGTGGGCTTTGGAAAAGGGGGCCACTGACT
1 TGTGGGCTTTAGAAAAGGGTGCCACTGACT
*
747045 TGTGGGCTTTTGAAAAG
1 TGTGGGCTTTAGAAAAG
747062 AAATTGCCAT
Statistics
Matches: 216, Mismatches: 31, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
27 7 0.03
28 15 0.07
29 58 0.27
30 56 0.26
31 7 0.03
32 44 0.20
33 25 0.12
34 4 0.02
ACGTcount: A:0.22, C:0.17, G:0.31, T:0.29
Consensus pattern (30 bp):
TGTGGGCTTTAGAAAAGGGTGCCACTGACT
Found at i:746992 original size:59 final size:59
Alignment explanation
Indices: 746916--747062 Score: 240
Period size: 59 Copynumber: 2.5 Consensus size: 59
746906 TTTTAAAGAT
* * *
746916 TGCCACTAACTTGTGGGCTTTTGAAGAGATACCACTGACTTGTGGGCTTTGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTAACTTGTGGGCTTTGGAAAAGGG
* *
746975 TGCCACTGACTTGTGGGCTTTGGAAAAGATGCCACTAACTTGTGGGCTTTGGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTAACTTGTGGGCTTTGGAAAAGGG
*
747034 GGCCACTGACTTGTGGGCTTTTGAAAAGA
1 TGCCACTGACTTGTGGGCTTTTGAAAAGA
747063 AATTGCCATT
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 81 1.00
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (59 bp):
TGCCACTGACTTGTGGGCTTTTGAAAAGATACCACTAACTTGTGGGCTTTGGAAAAGGG
Found at i:748062 original size:22 final size:24
Alignment explanation
Indices: 748027--748080 Score: 74
Period size: 24 Copynumber: 2.2 Consensus size: 24
748017 TGAAAATGGG
* *
748027 TTTTTCCCTTTTTTTTGTTTGTTT-
1 TTTTTTCCTTTTTTGT-TTTGTTTC
748051 TTTTTTCCTTTTTTGTTTTGTTTC
1 TTTTTTCCTTTTTTGTTTTGTTTC
748075 TTTTTT
1 TTTTTT
748081 GGAAAAGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.00, C:0.11, G:0.07, T:0.81
Consensus pattern (24 bp):
TTTTTTCCTTTTTTGTTTTGTTTC
Found at i:755451 original size:19 final size:18
Alignment explanation
Indices: 755427--755524 Score: 90
Period size: 19 Copynumber: 5.8 Consensus size: 18
755417 TAACTTACAT
755427 TGTATCGATACAAAACTTA
1 TGTATCGATAC-AAACTTA
755446 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
755459 TGTATCGATACAACACTTA
1 TGTATCGATACAA-ACTTA
755478 TGTATCGATAC--A--T-
1 TGTATCGATACAAACTTA
755491 TGTATCGATACAACACTTTA
1 TGTATCGATACAA-AC-TTA
755511 TGTATCGATACAAA
1 TGTATCGATACAAA
755525 TTGTTGAAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 26
0.72 0.00 0.28
Matches are distributed among these distances:
13 22 0.33
14 2 0.03
16 4 0.06
18 1 0.02
19 24 0.36
20 13 0.20
ACGTcount: A:0.37, C:0.17, G:0.12, T:0.34
Consensus pattern (18 bp):
TGTATCGATACAAACTTA
Found at i:755463 original size:32 final size:32
Alignment explanation
Indices: 755422--755522 Score: 184
Period size: 32 Copynumber: 3.1 Consensus size: 32
755412 GGTAGTAACT
*
755422 TACATTGTATCGATACAAAACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
755454 TACATTGTATCGATACAACACTTATGTATCGA
1 TACATTGTATCGATACAACACTTATGTATCGA
755486 TACATTGTATCGATACAACACTTTATGTATCGA
1 TACATTGTATCGATACAACAC-TTATGTATCGA
755519 TACA
1 TACA
755523 AATTGTTGAA
Statistics
Matches: 67, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 52 0.78
33 15 0.22
ACGTcount: A:0.36, C:0.18, G:0.12, T:0.35
Consensus pattern (32 bp):
TACATTGTATCGATACAACACTTATGTATCGA
Found at i:755464 original size:13 final size:13
Alignment explanation
Indices: 755446--755502 Score: 60
Period size: 13 Copynumber: 3.9 Consensus size: 13
755436 ACAAAACTTA
755446 TGTATCGATACAT
1 TGTATCGATACAT
755459 TGTATCGATACAACACTT
1 TGTATCGAT---ACA--T
755477 ATGTATCGATACAT
1 -TGTATCGATACAT
755491 TGTATCGATACA
1 TGTATCGATACA
755503 ACACTTTATG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
13 21 0.55
14 1 0.03
16 6 0.16
18 1 0.03
19 9 0.24
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:769093 original size:20 final size:20
Alignment explanation
Indices: 769064--769138 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
769054 AAAAAGACAT
*
769064 AATGTATCGATACATTGCAG
1 AATGTATCGATACATTGCAA
*
769084 AATATATCGATACATT-CATA
1 AATGTATCGATACATTGCA-A
* * *
769104 CATGTATCGATATATTGAAA
1 AATGTATCGATACATTGCAA
769124 AATGTATCGATACAT
1 AATGTATCGATACAT
769139 CTGGGTAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 2 0.04
20 42 0.93
21 1 0.02
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (20 bp):
AATGTATCGATACATTGCAA
Found at i:769132 original size:40 final size:39
Alignment explanation
Indices: 769061--769138 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
769051 GGTAAAAAGA
* *
769061 CATAATGTATCGATACATTGCAGAATATATCGATACATT
1 CATAATGTATCGATACATTGAAAAATATATCGATACATT
* *
769100 CATACATGTATCGATATATTGAAAAATGTATCGATACAT
1 CATA-ATGTATCGATACATTGAAAAATATATCGATACAT
769139 CTGGGTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.14, G:0.13, T:0.33
Consensus pattern (39 bp):
CATAATGTATCGATACATTGAAAAATATATCGATACATT
Found at i:770873 original size:47 final size:47
Alignment explanation
Indices: 770804--770900 Score: 158
Period size: 47 Copynumber: 2.1 Consensus size: 47
770794 AGACCTTTTG
* *
770804 AAAACCAACCTAGTAGTGTAATTCGATCCTCTCATCAAATATCCCAA
1 AAAACCAACCTAGCAATGTAATTCGATCCTCTCATCAAATATCCCAA
* *
770851 AAAACCAACCTAGCAATGTAATTCGATTCTTTCATCAAATATCCCAA
1 AAAACCAACCTAGCAATGTAATTCGATCCTCTCATCAAATATCCCAA
770898 AAA
1 AAA
770901 GACTAAGAGC
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.41, C:0.26, G:0.07, T:0.26
Consensus pattern (47 bp):
AAAACCAACCTAGCAATGTAATTCGATCCTCTCATCAAATATCCCAA
Found at i:773528 original size:130 final size:132
Alignment explanation
Indices: 773383--773654 Score: 343
Period size: 130 Copynumber: 2.1 Consensus size: 132
773373 AATTCTTCTT
* * * * *
773383 AAACCATTTAGGAAACTTGTTTTTCAAAAAACAACATTTTAAGATTTTAAATTGTACATTACTTA
1 AAACCATTTAGGAAACTTGTTTTTCAAAAAACAACATTTTAACATATAAAATTGGACATTACCTA
* * * *
773448 A-TTTT-AGATTGTTT-TTTTAATTAAAACACTATGTAACTTTTAGAAAACTTTGTCTTAATTTG
66 ACTTTTAAG-TGGTTTATCTTAATTAAAACACTATCTAACTTTTAGAAAACTTTGTCTTAATTTA
*
773510 GAC
130 AAC
* *
773513 AAACCATTTAGGAAACTTGTTTTTCAAAAAACAATATTTTAACATATAAAATTGGATATTACCTA
1 AAACCATTTAGGAAACTTGTTTTTCAAAAAACAACATTTTAACATATAAAATTGGACATTACCTA
** *** * *
773578 ACTTTTAAGTGGTTTATCTTAATTAGGATGTTATCTAACTTTTAGATAACTTTGTCTTGATTTAA
66 ACTTTTAAGTGGTTTATCTTAATTAAAACACTATCTAACTTTTAGAAAACTTTGTCTTAATTTAA
773643 AC
131 AC
773645 AAACCATTTA
1 AAACCATTTA
773655 ACATGCAATA
Statistics
Matches: 120, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
130 59 0.49
131 9 0.08
132 52 0.43
ACGTcount: A:0.37, C:0.11, G:0.10, T:0.42
Consensus pattern (132 bp):
AAACCATTTAGGAAACTTGTTTTTCAAAAAACAACATTTTAACATATAAAATTGGACATTACCTA
ACTTTTAAGTGGTTTATCTTAATTAAAACACTATCTAACTTTTAGAAAACTTTGTCTTAATTTAA
AC
Found at i:775862 original size:11 final size:11
Alignment explanation
Indices: 775838--775875 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
775828 TAATTTTGCG
775838 TTATGTAAAT-A
1 TTAT-TAAATAA
775849 TTATTAAATAA
1 TTATTAAATAA
*
775860 TTATCAAATAA
1 TTATTAAATAA
775871 TTATT
1 TTATT
775876 TAATTTAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 5 0.21
11 19 0.79
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (11 bp):
TTATTAAATAA
Found at i:778104 original size:2 final size:2
Alignment explanation
Indices: 778097--778133 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
778087 CAACTAAATC
* *
778097 AT AT AT AT AT AT AT AT GT AT AC AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
778134 GAAATATTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:780508 original size:19 final size:18
Alignment explanation
Indices: 780457--780546 Score: 66
Period size: 19 Copynumber: 5.1 Consensus size: 18
780447 TTGAATTTCA
780457 ATAA-TTTGTATCGATAC
1 ATAAGTTTGTATCGATAC
* *
780474 AAACAGTAAATGTATCGATAC
1 ATA-AGT--TTGTATCGATAC
780495 ATAAGTGTTGTATCGATAC
1 ATAAGT-TTGTATCGATAC
780514 --AA---TGTATCGATAC
1 ATAAGTTTGTATCGATAC
*
780527 ATAAGTTTTGTATTGATAC
1 ATAAG-TTTGTATCGATAC
780546 A
1 A
780547 ATGTATCGCT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
13 11 0.19
15 2 0.04
17 4 0.07
18 1 0.02
19 23 0.40
20 3 0.05
21 13 0.23
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (18 bp):
ATAAGTTTGTATCGATAC
Found at i:780521 original size:13 final size:13
Alignment explanation
Indices: 780503--780527 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
780493 ACATAAGTGT
780503 TGTATCGATACAA
1 TGTATCGATACAA
780516 TGTATCGATACA
1 TGTATCGATACA
780528 TAAGTTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:780523 original size:32 final size:32
Alignment explanation
Indices: 780482--780559 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
780472 ACAAACAGTA
780482 AATGTATCGATACATAAGTGTTGTATCGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
* *
780514 AATGTATCGATACATAAGTTTTGTATTGATAC
1 AATGTATCGATACATAAGTGTTGTATCGATAC
*
780546 AATGTATCGCTACA
1 AATGTATCGATACA
780560 AACCTACTGC
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.17, T:0.36
Consensus pattern (32 bp):
AATGTATCGATACATAAGTGTTGTATCGATAC
Found at i:780596 original size:13 final size:13
Alignment explanation
Indices: 780578--780603 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
780568 GCCAAGGAAA
780578 TGTATCGATACAT
1 TGTATCGATACAT
780591 TGTATCGATACAT
1 TGTATCGATACAT
780604 CGATCTTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:782994 original size:51 final size:51
Alignment explanation
Indices: 782938--783330 Score: 289
Period size: 51 Copynumber: 7.6 Consensus size: 51
782928 TTAAGTTTCT
* *
782938 CAATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * * * * * *
782989 TAATTTTCCACAATC-GGGATATTCCAACTCTGATTTTATTTTTGAAACAT
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* *
783039 CAATTTTTCACAATCGGGGATACTCCAACCACGGTTTTATTT-TCAAAACAC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCT-AAAACAC
* * *
783090 CAA-TTTTCTATAATCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
1 CAATTTTTC-ACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
* * * ** * *
783141 CAATTTTTCACAATCAGGGATACTCCAACCCC-A-TTAATCATCGGGGATACTC
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTAT-TTC--TAAAACAC
** * * ** * * *
783193 CAACCCTGTCAC-TTCCGAGGGGATACTCCAACCTTGGTTTTATTTCTAAAATAT
1 CAA-TTTTTCACAAT-C--GGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
** * * *
783247 TGATTTCTCACAATCGGGGATACTCCAACCCC-AGCTTTATTTCTAAAATA-
1 CAATTTTTCACAATCGGGGATACTCCAACCCCGA-TTTTATTTCTAAAACAC
* *
783297 TAGATTTCTCACAATCGGGGATACTCCAACCCCG
1 CA-ATTTTTCACAATCGGGGATACTCCAACCCCG
783331 TTATTTCTGA
Statistics
Matches: 264, Mismatches: 60, Indels: 35
0.74 0.17 0.10
Matches are distributed among these distances:
49 4 0.02
50 51 0.19
51 160 0.61
52 13 0.05
53 12 0.05
54 4 0.02
55 14 0.05
56 2 0.01
57 4 0.02
ACGTcount: A:0.30, C:0.26, G:0.12, T:0.32
Consensus pattern (51 bp):
CAATTTTTCACAATCGGGGATACTCCAACCCCGATTTTATTTCTAAAACAC
Found at i:783163 original size:102 final size:101
Alignment explanation
Indices: 782938--783170 Score: 333
Period size: 101 Copynumber: 2.3 Consensus size: 101
782928 TTAAGTTTCT
* * *
782938 CAATTTTTCATAATCGGGGATACTCCAACCCCGGTTTTATTTCTAAAACACTAATTTTCCACAAT
1 CAATTTTTCACAATCGGGGATACTCCAACCACGGTTTTATTTCTAAAACACCAATTTTCCACAAT
* * *** *
783003 CGGGATATTCCAACTCTGATTTTATTTTTGAAACAT
66 CGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
* *
783039 CAATTTTTCACAATCGGGGATACTCCAACCACGGTTTTATTT-TCAAAACACCAATTTTCTATAA
1 CAATTTTTCACAATCGGGGATACTCCAACCACGGTTTTATTTCT-AAAACACCAATTTTCCACAA
783103 TCGGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
65 TC-GGGATACTCCAACTCCGATTTTATTTCCAAAACAC
*
783141 CAATTTTTCACAATCAGGGATACTCCAACC
1 CAATTTTTCACAATCGGGGATACTCCAACC
783171 CCATTAATCA
Statistics
Matches: 118, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
100 1 0.01
101 59 0.50
102 58 0.49
ACGTcount: A:0.31, C:0.24, G:0.11, T:0.34
Consensus pattern (101 bp):
CAATTTTTCACAATCGGGGATACTCCAACCACGGTTTTATTTCTAAAACACCAATTTTCCACAAT
CGGGATACTCCAACTCCGATTTTATTTCCAAAACAC
Found at i:783437 original size:79 final size:79
Alignment explanation
Indices: 783261--783437 Score: 293
Period size: 79 Copynumber: 2.2 Consensus size: 79
783251 TTCTCACAAT
* *
783261 CGGGGATACTCCAACCCCAGCTTTATTTCTAAAATATAGATTTCTCACAATCGGGGATACTCCAA
1 CGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATAGATTTCTCACAATCGGGGATACTCCAA
*
783326 CCCCGTTATTTCTG
66 CCCCATTATTTCTG
* *
783340 AGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATTGATTTCTCACAATCGGGGATACTCCAA
1 CGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATAGATTTCTCACAATCGGGGATACTCCAA
783405 CCCCATTATTT-TCG
66 CCCCATTATTTCT-G
783419 CGGGGATACTCCAACCCCG
1 CGGGGATACTCCAACCCCG
783438 TTATTTTTGA
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
78 1 0.01
79 90 0.99
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (79 bp):
CGGGGATACTCCAACCCCGGCTTTATTCCTAAAATATAGATTTCTCACAATCGGGGATACTCCAA
CCCCATTATTTCTG
Found at i:783465 original size:28 final size:28
Alignment explanation
Indices: 783392--783465 Score: 121
Period size: 28 Copynumber: 2.6 Consensus size: 28
783382 TCTCACAATC
* *
783392 GGGGATACTCCAACCCCATTATTTTCGC
1 GGGGATACTCCAACCCCGTTATTTTCGA
*
783420 GGGGATACTCCAACCCCGTTATTTTTGA
1 GGGGATACTCCAACCCCGTTATTTTCGA
783448 GGGGATACTCCAACCCCG
1 GGGGATACTCCAACCCCG
783466 ATTTTATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.26
Consensus pattern (28 bp):
GGGGATACTCCAACCCCGTTATTTTCGA
Found at i:783504 original size:79 final size:79
Alignment explanation
Indices: 783421--783597 Score: 246
Period size: 79 Copynumber: 2.2 Consensus size: 79
783411 TATTTTCGCG
*** *
783421 GGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGATTTTATTTTCAAAACACCA
1 GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCA
* *
783486 ATTTTCTATAATTA
66 ATTTTCCATAATCA
* * *
783500 GGGATACTCCAACCCTGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAGAACTCCA
1 GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCA
783565 ATTTTCCATAATCA
66 ATTTTCCATAATCA
* * *
783579 GGGATCCTCTAGCCCCGTT
1 GGGATACTCCAACCCCGTT
783598 GTTATCACCA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
79 85 1.00
ACGTcount: A:0.27, C:0.28, G:0.14, T:0.32
Consensus pattern (79 bp):
GGGATACTCCAACCCCGTTATTTCCAAGGGGATACTCCAACCCCGATTTTATTTCCAAAACACCA
ATTTTCCATAATCA
Found at i:783504 original size:107 final size:107
Alignment explanation
Indices: 783312--783544 Score: 290
Period size: 107 Copynumber: 2.2 Consensus size: 107
783302 TTCTCACAAT
* * *
783312 CGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGGCTTTATTCCTAAAATAT
1 CGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGACTTTATTCCTAAAACAC
** * * *
783377 TGATTTCTCACAATCGGGGATACTCCAACCCCATTATTTTCG
66 CAATTTCTCACAATCAGGGATACTCCAACCCCATTATTTCCA
* * *
783419 CGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAACCCCGATTTTATT-TTCAAAACA
1 CGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGACTTTATTCCT-AAAACA
* * **
783483 CCAATTT-TCTATAATTAGGGATACTCCAACCCTGTTATTTCCA
65 CCAATTTCTC-ACAATCAGGGATACTCCAACCCCATTATTTCCA
*
783526 AGGGGATACTCCAACCCCG
1 CGGGGATACTCCAACCCCG
783545 ATTTTATTTC
Statistics
Matches: 108, Mismatches: 16, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
106 3 0.03
107 105 0.97
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (107 bp):
CGGGGATACTCCAACCCCGTTATTTCTGAGGGGATACTCCAACCCCGACTTTATTCCTAAAACAC
CAATTTCTCACAATCAGGGATACTCCAACCCCATTATTTCCA
Found at i:799641 original size:17 final size:15
Alignment explanation
Indices: 799619--799682 Score: 74
Period size: 16 Copynumber: 3.9 Consensus size: 15
799609 CATTCTTTTT
799619 AAAAAAAAAATAATAAC
1 AAAAAAAAAA-AA-AAC
799636 AAAAAAAAACAAAAAC
1 AAAAAAAAA-AAAAAC
799652 AAAAAAAAAACAAAAC
1 AAAAAAAAAA-AAAAC
799668 AAAACAAAGAAAAAA
1 AAAA-AAA-AAAAAA
799683 GAGAGAAAAG
Statistics
Matches: 43, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
15 1 0.02
16 21 0.49
17 17 0.40
18 4 0.09
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.03
Consensus pattern (15 bp):
AAAAAAAAAAAAAAC
Found at i:799649 original size:22 final size:21
Alignment explanation
Indices: 799636--799682 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 21
799626 AAATAATAAC
799636 AAAAAAAAACAAAAACAAAAA
1 AAAAAAAAACAAAAACAAAAA
*
799657 AAAAACAAAAC-AAAACAAAGA
1 AAAAA-AAAACAAAAACAAAAA
799678 AAAAA
1 AAAAA
799683 GAGAGAAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.87, C:0.11, G:0.02, T:0.00
Consensus pattern (21 bp):
AAAAAAAAACAAAAACAAAAA
Found at i:799649 original size:27 final size:26
Alignment explanation
Indices: 799619--799682 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
799609 CATTCTTTTT
*
799619 AAAAAAAAAATAATAACAAAAAAAAAC
1 AAAAAAAAAA-AAAAACAAAAAAAAAC
*
799646 AAAAACAAAAAAAAAACAAAACAAAAC
1 AAAAA-AAAAAAAAAACAAAAAAAAAC
*
799673 AAAGAAAAAA
1 AAAAAAAAAA
799683 GAGAGAAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 5 0.15
27 23 0.70
28 5 0.15
ACGTcount: A:0.86, C:0.09, G:0.02, T:0.03
Consensus pattern (26 bp):
AAAAAAAAAAAAAAACAAAAAAAAAC
Found at i:800963 original size:61 final size:59
Alignment explanation
Indices: 800666--801216 Score: 552
Period size: 55 Copynumber: 9.5 Consensus size: 59
800656 CTCCTTTCAC
* * *
800666 TTTT-CAGTCCTCAAAGAGGAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGATG-CTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
800726 CCTTT-CAGTCCTCAAAAAGCAGGATGC----CTTTCAAAGCCCACACAAGTTGGTGGCA
1 -TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
***
800781 TTTTTTGGTCCTCAAAGAGCAGGATGC----CTTTTAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
* * *
800836 TTTTCCAGTCCTCAAAGAGCAGGACGC----CTTTTAAAGCTCACACAAGTTAGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
800891 TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGATGC-TTTTCTTTT-AAAGCCCACACAAGTTGGTGGCA
** *
800952 TTTTCCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
1 TTTTCCAGTCCTCAAAGAGCAGGA-TGCTTTTCTTTT-AAAGCCCACACAAGTTGGTGGCA
* *
801013 CCTTTT--AGTCCTCAAAGAGCAGGA--C--GTCTTTTAAAGCCCACACGAGTTGGTGGCA
1 --TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
*** * * * * *
801068 CCCTCCAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACATAAGCTGGCGGCG
1 TTTTCCAGTCCTCAAAGAGCAGGATG-C-TTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
** *
801129 CCTT-CAGTCCTCAAAGAGCATGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGC-
1 TTTTCCAGTCCTCAAAGAGCAGGATG-CTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA
**
801188 GCTTCTCAGTCCTCAAAGAGCAGGATGCT
1 TTTTC-CAGTCCTCAAAGAGCAGGATGCT
801217 CCCTCCTTTT
Statistics
Matches: 430, Mismatches: 39, Indels: 43
0.84 0.08 0.08
Matches are distributed among these distances:
53 1 0.00
54 3 0.01
55 190 0.44
56 6 0.01
58 2 0.00
59 7 0.02
60 53 0.12
61 163 0.38
62 1 0.00
63 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (59 bp):
TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:800976 original size:116 final size:114
Alignment explanation
Indices: 800666--801217 Score: 572
Period size: 116 Copynumber: 4.8 Consensus size: 114
800656 CTCCTTTCAC
* * *
800666 TTTTCAGTCCTCAAAGAGGAGGACGCCTTTTCCTTTCAAAGCCCACACAAGTTGGTGGCACCTTT
1 TTTTCAGTCCTCAAAGAGCAGGATG-CTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCA-CTTT
* * *
800731 -CAGTCCTCAAAAAGCAGGATGC-CTTTCAAAGCCCACACAAGTTGGTGGCA
63 CCAGTCCTCAAAGAGCAGGACGCTCTTTTAAAGCCCACACAAGTTGGTGGCA
** *
800781 TTTTTTGGTCCTCAAAGAGCAGGATGC----CTTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 -TTTTCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCC
* *
800842 AGTCCTCAAAGAGCAGGACGC-CTTTTAAAGCTCACACAAGTTAGTGGCA
65 AGTCCTCAAAGAGCAGGACGCTCTTTTAAAGCCCACACAAGTTGGTGGCA
*
800891 TTTTCCAGTCCTCAAAGAGCAGGATGCTTTTTCTTTTCAAAGCCCACACAAGTTGGTGGCATTTT
1 TTTT-CAGTCCTCAAAGAGCAGGATGC-TTTTCTTTT-AAAGCCCACACAAGTTGGTGGCACTTT
* *
800956 CCAGTCCTCAAAGAGCAGGACACCTTTTCTTTTCAAAGCCCACACGAGTTGGTGGCA
63 CCAGTCCTCAAAGAGCAGGAC-GC---TCTTTT-AAAGCCCACACAAGTTGGTGGCA
* * **
801013 CCTTTT-AGTCCTCAAAGAGCAGGA--C--GTCTTTTAAAGCCCACACGAGTTGGTGGCACCCTC
1 --TTTTCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
* * * *
801073 CAGTCCTCAAAGAGCAGGACGCCTTTTTCTTTTAAAGCCCACATAAGCTGGCGGCG
64 CAGTCCTCAAAGAGCAGGACG-C----TCTTTTAAAGCCCACACAAGTTGGTGGCA
** * *
801129 CCTTCAGTCCTCAAAGAGCATGATGCCTTTTCCTTTTAAAGCCCACACAAGTTGGTGGCGC-TTC
1 TTTTCAGTCCTCAAAGAGCAGGATG-CTTTT-CTTTTAAAGCCCACACAAGTTGGTGGCACTTTC
*
801193 TCAGTCCTCAAAGAGCAGGATGCTC
64 -CAGTCCTCAAAGAGCAGGACGCTC
801218 CCTCCTTTTG
Statistics
Matches: 374, Mismatches: 36, Indels: 52
0.81 0.08 0.11
Matches are distributed among these distances:
109 7 0.02
110 92 0.25
114 2 0.01
115 23 0.06
116 134 0.36
117 16 0.04
118 1 0.00
120 5 0.01
121 52 0.14
122 38 0.10
124 4 0.01
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (114 bp):
TTTTCAGTCCTCAAAGAGCAGGATGCTTTTCTTTTAAAGCCCACACAAGTTGGTGGCACTTTCCA
GTCCTCAAAGAGCAGGACGCTCTTTTAAAGCCCACACAAGTTGGTGGCA
Found at i:801318 original size:55 final size:55
Alignment explanation
Indices: 801234--801533 Score: 431
Period size: 55 Copynumber: 5.3 Consensus size: 55
801224 TTTGCCCTTT
* * * *
801234 AGTCCTTAAAGAGCAGGACGCCTTTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
801289 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
801344 AGTCCTCAAAGAGCAGGAAGCCT-TTCAAAGCCCACACAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGACGCCTCTT-AAAGCCCACACAAGTTGGTGGCATTTTCC
801399 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * * **
801454 AGTCCTCAAAAAGTAGGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAGAGCAGGACGC---CTC-TT--AAAGCCCACACAAGTTGGTGGCATTTTCC
801515 AGTCCTCAAAGAGCAGGAC
1 AGTCCTCAAAGAGCAGGAC
801534 ACCTTTCCTT
Statistics
Matches: 221, Mismatches: 16, Indels: 10
0.89 0.06 0.04
Matches are distributed among these distances:
54 2 0.01
55 169 0.76
56 2 0.01
58 3 0.01
59 2 0.01
61 43 0.19
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (55 bp):
AGTCCTCAAAGAGCAGGACGCCTCTTAAAGCCCACACAAGTTGGTGGCATTTTCC
Found at i:801550 original size:61 final size:57
Alignment explanation
Indices: 801234--801590 Score: 367
Period size: 55 Copynumber: 6.3 Consensus size: 57
801224 TTTGCCCTTT
* * * *
801234 AGTCCTTAAAGAGCAGGACGCCT--TTTAAAGCCCACACAAGTTGGTGGCACTTCCC
1 AGTCCTCAAAGAGCAGGACACCTCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
*
801289 AGTCCTCAAAGAGCAGGACGCCT-C-TTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* *
801344 AGTCCTCAAAGAGCAGGA-AGCCT--TTCAAAGCCCACACAAGTTGGTGGCATTTTCT
1 AGTCCTCAAAGAGCAGGACA-CCTCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
*
801399 AGTCCTCAAAGAGCAGGACGCCT-C-TTAAAGCCCACACAAGTTGGTGGCATTTTCC
1 AGTCCTCAAAGAGCAGGACACCTCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
* * ** * **
801454 AGTCCTCAAAAAGTAGGATGCTTTCTCTTTGCAAAGCCCACACAAGTTGGTGGCACCTTCC
1 AGTCCTCAAAGAGCAGGACAC-CTC-CTTT--AAAGCCCACACAAGTTGGTGGCATTTTCC
* * *
801515 AGTCCTCAAAGAGCAGGACACCTTTCCTTTTCAAAGCCTACA-AGAGTTGGTGGCGCTTTT-T
1 AGTCCTCAAAGAGCAGGACACC--TCC-TTT-AAAGCCCACACA-AGTTGGTGGC-ATTTTCC
*
801576 AGTCCTCGAAGAGCA
1 AGTCCTCAAAGAGCA
801591 AGATGCACTT
Statistics
Matches: 260, Mismatches: 26, Indels: 26
0.83 0.08 0.08
Matches are distributed among these distances:
55 169 0.65
56 1 0.00
58 1 0.00
59 2 0.01
60 1 0.00
61 79 0.30
62 7 0.03
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (57 bp):
AGTCCTCAAAGAGCAGGACACCTCCTTTAAAGCCCACACAAGTTGGTGGCATTTTCC
Done.