Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold483
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 459596
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
File 1 of 3
Found at i:1181 original size:17 final size:17
Alignment explanation
Indices: 1159--1204 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
1149 TTATTGAACT
1159 TAATAAATA-ATATTACC
1 TAATAAATATA-ATTACC
*
1176 TAATAAATATAATTATC
1 TAATAAATATAATTACC
*
1193 TAATAATTATAA
1 TAATAAATATAA
1205 AAAATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATAATTACC
Found at i:11225 original size:97 final size:98
Alignment explanation
Indices: 11054--11246 Score: 280
Period size: 97 Copynumber: 2.0 Consensus size: 98
11044 TGTCAAGCAC
11054 AGGTGTTGGACATGGTACTTCGAAAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAA
1 AGGTGTTGGACATGGTACTTCG--AAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAA
* * *
11119 AATAGAAGCGCAATGCTTTTGTAATGCCTTTTTTT
64 AATAAAAGCGCAATGCTTTCGTAATGACTTTTTTT
* * * * * *
11154 AGGTGTTGGAGATGGTACTTCG-AAAAATAAATAGTCATTGTTACATAGGCTATGATTGACAAAA
1 AGGTGTTGGACATGGTACTTCGAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAAA
11218 TAAAAGCGCAATGCTTTCGTAATGACTTT
66 TAAAAGCGCAATGCTTTCGTAATGACTTT
11247 CTTGAAGATT
Statistics
Matches: 84, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
97 63 0.75
100 21 0.25
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.31
Consensus pattern (98 bp):
AGGTGTTGGACATGGTACTTCGAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAAA
TAAAAGCGCAATGCTTTCGTAATGACTTTTTTT
Found at i:13623 original size:2 final size:2
Alignment explanation
Indices: 13616--13647 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
13606 AATAGAAGAC
13616 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
13648 TGAAATAATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:19333 original size:17 final size:16
Alignment explanation
Indices: 19297--19344 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 16
19287 TAGTTTCAGC
*
19297 ATTTTAGTTTTTAAATTT
1 ATTTTA-TTTTT-TATTT
19315 ATTTTATTTATTTATTT
1 ATTTTATTT-TTTATTT
19332 ATTTTATTTTTTA
1 ATTTTATTTTTTA
19345 GCATCATCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 4 0.14
17 16 0.57
18 8 0.29
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (16 bp):
ATTTTATTTTTTATTT
Found at i:19576 original size:23 final size:23
Alignment explanation
Indices: 19532--19583 Score: 68
Period size: 23 Copynumber: 2.3 Consensus size: 23
19522 AGAAAGGAAA
**
19532 AAAACAGTAGCAACTTAACAAGC
1 AAAACAGTAGCAACACAACAAGC
* *
19555 AAAACAGTAGCATCACAGCAAGC
1 AAAACAGTAGCAACACAACAAGC
19578 AAAACA
1 AAAACA
19584 ACAGCGAGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.54, C:0.23, G:0.13, T:0.10
Consensus pattern (23 bp):
AAAACAGTAGCAACACAACAAGC
Found at i:19980 original size:156 final size:156
Alignment explanation
Indices: 19649--19990 Score: 381
Period size: 156 Copynumber: 2.2 Consensus size: 156
19639 CACATCAAAG
* * *
19649 GTATCCCCTATGGGTATTTTCATAATTTTTTTAAAACTGAGTCCTAGGTTGTTACCGAATCCACT
1 GTATCCCCTAAGGGTATTTTCATAATTTTTTCAAAACTGAGTCCTAGGTCGTTACCGAATCCACT
* * * * * *** *
19714 TTTATGCTGACGGTGGGTATTTAGGATAGGTTCATCTCATTTTGTAATCCTTTTAAAGTCTTTTA
66 TTTATGCCGAAGGTGGATATTTAAGATAGGTTCATCCCATTCCATAATCCTTTTAAAGTCCTTTA
*
19779 GGGATATCAAGAACTTTTACGTTAAA
131 GGGATATCAAGAACTTTTACGTGAAA
**
19805 GATATCCCCTAAGATTATTTT-AGT-ATTTTTTCAAAA-TCGAGTCCTAGGTCGTTACC-AAGTC
1 G-TATCCCCTAAGGGTATTTTCA-TAATTTTTTCAAAACT-GAGTCCTAGGTCGTTACCGAA-TC
** * *
19866 TGCTTTTATGCCGAAGGTGGATATTTAAGATAGGTTCGTCCCA-TCCATAATCCTTTTTAAGTCC
62 CACTTTTATGCCGAAGGTGGATATTTAAGATAGGTTCATCCCATTCCATAATCCTTTTAAAGTCC
* *
19930 TTTAGCGG-TATCAGGTACTTTTACTGTCGAAA
127 TTTAG-GGATATCAAGAACTTTTAC-GT-GAAA
*
19962 GTATCCCCTAAGGGTATTTTTATAATTTT
1 GTATCCCCTAAGGGTATTTTCATAATTTT
19991 CCTTGAACTT
Statistics
Matches: 154, Mismatches: 23, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
155 38 0.25
156 89 0.58
157 27 0.18
ACGTcount: A:0.25, C:0.17, G:0.18, T:0.40
Consensus pattern (156 bp):
GTATCCCCTAAGGGTATTTTCATAATTTTTTCAAAACTGAGTCCTAGGTCGTTACCGAATCCACT
TTTATGCCGAAGGTGGATATTTAAGATAGGTTCATCCCATTCCATAATCCTTTTAAAGTCCTTTA
GGGATATCAAGAACTTTTACGTGAAA
Found at i:22819 original size:22 final size:23
Alignment explanation
Indices: 22794--22855 Score: 65
Period size: 22 Copynumber: 2.7 Consensus size: 23
22784 GGAAAAGTAA
22794 AAAAAAAAGAAGAAAAAA-TGAC
1 AAAAAAAAGAAGAAAAAATTGAC
*
22816 AAAAAAATGAGAAAGAAAAAATTGAG
1 AAAAAAA--AG-AAGAAAAAATTGAC
*
22842 AAAATAAA-AAGAAA
1 AAAAAAAAGAAGAAA
22856 GATATGAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
22 13 0.38
24 3 0.09
25 9 0.26
26 9 0.26
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.08
Consensus pattern (23 bp):
AAAAAAAAGAAGAAAAAATTGAC
Found at i:22854 original size:26 final size:24
Alignment explanation
Indices: 22793--22857 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 24
22783 GGGAAAAGTA
22793 AAAAAAAAAG-AAGAAAAAATGAC
1 AAAAAAAAAGAAAGAAAAAATGAC
* *
22816 AAAAAAATGAGAAAGAAAAAATTGAG
1 AAAAAAA-AAGAAAGAAAAAA-TGAC
22842 AAAATAAAAAGAAAGA
1 AAAA-AAAAAGAAAGA
22858 TATGAAATCT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
23 7 0.20
24 2 0.06
25 9 0.26
26 14 0.40
27 3 0.09
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (24 bp):
AAAAAAAAAGAAAGAAAAAATGAC
Found at i:24612 original size:69 final size:68
Alignment explanation
Indices: 24511--24710 Score: 194
Period size: 69 Copynumber: 2.9 Consensus size: 68
24501 TTACAAATTT
* * *
24511 AGTTTTTCATTTTAATGTTGAATCCTCGATGGAAGG-GTTTTTTATTTTAAAGTTAAAGTCTTAA
1 AGTTTTTCA-TTTAAAGTTAAAGCCTCGATGG-AGGAGTTTTTTATTTTAAAGTTAAAGTCTTAA
24575 TGAAAA
64 TG-AAA
* * * * *
24581 AGTTTTTCATGTAAAGTTAAAGCCTCGATGGAGGAGTTTTTT-TATTCAAATTTAAAGCCTCAAT
1 AGTTTTTCATTTAAAGTTAAAGCCTCGATGGAGGAGTTTTTTAT-TTTAAAGTTAAAGTCTTAAT
* *
24645 GGAG
65 GAAA
*
24649 AGTTTTTCAATTTAAA-TTAGAAGCCTCGATAGAGGAGTTTTTTCA-TTTAAAG-TAGAAGTCTT
1 AGTTTTTC-ATTTAAAGTTA-AAGCCTCGATGGAGGAGTTTTTT-ATTTTAAAGTTA-AAGTCTT
24711 GGTAGAGGAG
Statistics
Matches: 107, Mismatches: 16, Indels: 15
0.78 0.12 0.11
Matches are distributed among these distances:
68 18 0.17
69 80 0.75
70 9 0.08
ACGTcount: A:0.32, C:0.10, G:0.18, T:0.41
Consensus pattern (68 bp):
AGTTTTTCATTTAAAGTTAAAGCCTCGATGGAGGAGTTTTTTATTTTAAAGTTAAAGTCTTAATG
AAA
Found at i:24619 original size:34 final size:35
Alignment explanation
Indices: 24513--24778 Score: 158
Period size: 35 Copynumber: 7.7 Consensus size: 35
24503 ACAAATTTAG
* * *
24513 TTTTTCATTTTAATGTTGAATCCTCGATGGAAGG-GT
1 TTTTTCA-TTTAAAGTTAAAGCCTCGATGG-AGGAGT
* ** * **
24549 TTTTT-ATTTTAAAGTTAAAGTCTTAATGAAAAAG-
1 TTTTTCA-TTTAAAGTTAAAGCCTCGATGGAGGAGT
*
24583 TTTTTCATGTAAAGTTAAAGCCTCGATGGAGGAGT
1 TTTTTCATTTAAAGTTAAAGCCTCGATGGAGGAGT
* * * *
24618 TTTTTTATTCAAATTTAAAGCCTCAATGGA-GAG-
1 TTTTTCATTTAAAGTTAAAGCCTCGATGGAGGAGT
*
24651 TTTTTCAATTTAAA-TTAGAAGCCTCGATAGAGGAGT
1 TTTTTC-ATTTAAAGTTA-AAGCCTCGATGGAGGAGT
* * * *
24687 TTTTTCATTTAAAG-TAGAAGTCTTGGTAGAGGAGT
1 TTTTTCATTTAAAGTTA-AAGCCTCGATGGAGGAGT
* * *
24722 TTTTT-ACTTTAAAAG-TAGAAGCCTTGGTGGAAGAG-
1 TTTTTCA-TTT-AAAGTTA-AAGCCTCGATGGAGGAGT
* *
24757 -TTTTCATTTAAAATTGAAGCCT
1 TTTTTCATTTAAAGTTAAAGCCT
24779 TAATAAAAGA
Statistics
Matches: 185, Mismatches: 33, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
33 17 0.09
34 55 0.30
35 81 0.44
36 32 0.17
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (35 bp):
TTTTTCATTTAAAGTTAAAGCCTCGATGGAGGAGT
Found at i:24726 original size:36 final size:36
Alignment explanation
Indices: 24651--24801 Score: 132
Period size: 36 Copynumber: 4.3 Consensus size: 36
24641 CAATGGAGAG
* * *
24651 TTTTTCAATTTAAATTAGAAGCCTCGATAGAGGAG-T
1 TTTTTC-ATTTAAAGTAGAAGCCTTGGTAGAGGAGTT
*
24687 TTTTTCATTTAAAGTAGAAGTCTTGGTAGAGGAGTT
1 TTTTTCATTTAAAGTAGAAGCCTTGGTAGAGGAGTT
* * *
24723 TTTTAC-TTTAAAAGTAGAAGCCTTGGTGGAAGAG--
1 TTTTTCATTT-AAAGTAGAAGCCTTGGTAGAGGAGTT
* * ** * *
24757 -TTTTCATTTAAAATTGAAGCCTTAATAAAAGAGTT
1 TTTTTCATTTAAAGTAGAAGCCTTGGTAGAGGAGTT
24792 TTTTTCATTT
1 TTTTTCATTT
24802 TAAATTTATG
Statistics
Matches: 94, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
33 22 0.23
34 3 0.03
35 27 0.29
36 42 0.45
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (36 bp):
TTTTTCATTTAAAGTAGAAGCCTTGGTAGAGGAGTT
Found at i:24985 original size:6 final size:6
Alignment explanation
Indices: 24976--25028 Score: 67
Period size: 6 Copynumber: 9.3 Consensus size: 6
24966 AAATTTTGTC
* *
24976 TTTAAT TTTAAT TTTAAT TTTAA- TTTAA- -TTAGT TTCAAT TTTAAT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT
25021 TTTAAT TT
1 TTTAAT TT
25029 CAAGAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
4 3 0.07
5 5 0.12
6 33 0.80
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (6 bp):
TTTAAT
Found at i:25049 original size:14 final size:14
Alignment explanation
Indices: 25030--25058 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
25020 TTTTAATTTC
25030 AAGAAAATAAAAAA
1 AAGAAAATAAAAAA
25044 AAGAAAATAAAAAA
1 AAGAAAATAAAAAA
25058 A
1 A
25059 TTCAACAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.86, C:0.00, G:0.07, T:0.07
Consensus pattern (14 bp):
AAGAAAATAAAAAA
Found at i:33805 original size:19 final size:20
Alignment explanation
Indices: 33781--33829 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
33771 ATTGTGTAAG
* *
33781 TATCGATACAATG-ATCATA
1 TATCGATACAAAGCATAATA
33800 TATCGATACAAAGCATAATA
1 TATCGATACAAAGCATAATA
33820 TATCGATACA
1 TATCGATACA
33830 TCTGGATGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
19 12 0.44
20 15 0.56
ACGTcount: A:0.45, C:0.16, G:0.10, T:0.29
Consensus pattern (20 bp):
TATCGATACAAAGCATAATA
Found at i:38266 original size:19 final size:20
Alignment explanation
Indices: 38225--38266 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
38215 ATATTTTATA
38225 TTTATATAAATTACTTAAAT
1 TTTATATAAATTACTTAAAT
38245 TTTATATAAATT-CTTAAAT
1 TTTATATAAATTACTTAAAT
38264 TTT
1 TTT
38267 GAATTGATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.55
Consensus pattern (20 bp):
TTTATATAAATTACTTAAAT
Found at i:46660 original size:20 final size:20
Alignment explanation
Indices: 46620--46666 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
46610 TTATAAACAT
*
46620 ATATAATATAAATAATATAA
1 ATATAAAATAAATAATATAA
46640 ATATAAAATAAATAAGT-TAA
1 ATATAAAATAAATAA-TATAA
46660 ATA-AAAA
1 ATATAAAA
46667 ACACAAAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 4 0.16
20 20 0.80
21 1 0.04
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
ATATAAAATAAATAATATAA
Found at i:51913 original size:21 final size:20
Alignment explanation
Indices: 51880--51927 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 20
51870 AGCTAGATGT
51880 TGGACAT-G-TTAAAATGCA
1 TGGACATGGCTTAAAATGCA
51898 TGGTACATGGCTTAAAATGCA
1 TGG-ACATGGCTTAAAATGCA
51919 TGGACATGG
1 TGGACATGG
51928 GTTGTTTAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.11
19 4 0.15
20 7 0.26
21 13 0.48
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (20 bp):
TGGACATGGCTTAAAATGCA
Found at i:52843 original size:20 final size:20
Alignment explanation
Indices: 52818--52888 Score: 88
Period size: 20 Copynumber: 3.5 Consensus size: 20
52808 AAATAGAATG
*
52818 TATCGATACATTAAAAAATG
1 TATCGATACATTAAAAAATA
* * * *
52838 TGTCGATACATTCATACATA
1 TATCGATACATTAAAAAATA
*
52858 TATCGATACATTGAAAAATA
1 TATCGATACATTAAAAAATA
52878 TATCGATACAT
1 TATCGATACAT
52889 CTGGGTAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.32
Consensus pattern (20 bp):
TATCGATACATTAAAAAATA
Found at i:53386 original size:10 final size:10
Alignment explanation
Indices: 53371--53396 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
53361 TTGCACCTCT
53371 TTTTTTTGTA
1 TTTTTTTGTA
53381 TTTTTTTGTA
1 TTTTTTTGTA
53391 TTTTTT
1 TTTTTT
53397 CAAATAAGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.08, T:0.85
Consensus pattern (10 bp):
TTTTTTTGTA
Found at i:56146 original size:78 final size:77
Alignment explanation
Indices: 55968--56192 Score: 178
Period size: 78 Copynumber: 2.9 Consensus size: 77
55958 ATTGTTGAGG
* * * * ** *
55968 GGATACTCTATCCCCGTTTGTACTTCTAAAAAACTAAAATTTTCATCTCAGGGGATTGTCTAATC
1 GGATACTCCAACCCCGTTT-TACTT-TAAAACACTGAAATTTTCATCTCAGGGGATACTCCAA-C
* *
56033 TTACCATT-T-TC-AAGG
63 --CCCATTGTCTCGAA-A
*
56048 GGATACTCCAACCCCGTTTTA-TTTCCCAAACA-TCG-AATGTTTCATCTCTA-GGGATACTCCA
1 GGATACTCCAACCCCGTTTTACTTT--AAAACACT-GAAAT-TTTCATCTC-AGGGGATACTCCA
56109 ACCCCATTGTCTCGAAA
61 ACCCCATTGTCTCGAAA
*
56126 GGATACTCTAA-CCCGTTTTTACCTTTAAAACACTGAAATTTTCATCTCAGGGGATACTCCAACC
1 GGATACTCCAACCCCG-TTTTA-CTTTAAAACACTGAAATTTTCATCTCAGGGGATACTCCAACC
56190 CCA
64 CCA
56193 CCATTTTTAA
Statistics
Matches: 119, Mismatches: 12, Indels: 30
0.74 0.07 0.19
Matches are distributed among these distances:
76 5 0.04
77 7 0.06
78 56 0.47
79 30 0.25
80 21 0.18
ACGTcount: A:0.28, C:0.27, G:0.13, T:0.32
Consensus pattern (77 bp):
GGATACTCCAACCCCGTTTTACTTTAAAACACTGAAATTTTCATCTCAGGGGATACTCCAACCCC
ATTGTCTCGAAA
Found at i:57730 original size:17 final size:17
Alignment explanation
Indices: 57708--57753 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
57698 TATTGAAACT
57708 TAATAAATA-ATATTACC
1 TAATAAATATA-ATTACC
*
57725 TAATAAATATAATTATC
1 TAATAAATATAATTACC
*
57742 TAATAATTATAA
1 TAATAAATATAA
57754 AAAATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
17 25 0.96
18 1 0.04
ACGTcount: A:0.54, C:0.07, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATAATTACC
Found at i:61802 original size:58 final size:58
Alignment explanation
Indices: 61733--62249 Score: 193
Period size: 58 Copynumber: 9.1 Consensus size: 58
61723 AAATATTTCT
* *
61733 AAAATATATGAAATTACATAAAAGTCCCTAGATCATAAAAAATAACCTAAATGATC-CC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGA-CACC
* ** * * **
61791 AACATACATGAAATTGTATAAAAGTCCATTGATCATGACAAAAA-AACCCAAATGACATG
1 AAAATACATGAAATTACATAAAAGTCCATAGATCAT-A-AAAAATAACCTAAATGACACC
* * * *** * * *
61850 AAAATGCATGAAATGACAGAAAAGTTTTTAGATCATGAAAAATAACCTAAATGGCATC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGACACC
* ** * *** *
61908 AAAATTCACAAAATT--AT-----TCC-CAGATCATGGTAAATGACCTAAATGACA--
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGACACC
* ** ** * * ** * *
61956 AAAATTCACAAAATTACAT-CCAGATCCCTAGATTATGGAAAATACCCTAAATGACATC
1 AAAATACATGAAATTACATAAAAG-TCCATAGATCATAAAAAATAACCTAAATGACACC
* * * * * * * * *
62014 AAAAT-TATGAAATGATATAAAAGTCCTTGGATCATGAAAAATGACCTAAATGGCATC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGACACC
* ** * ** * * * *
62071 AAAATTCACAAAATTGCATCTAAGTCCCTAGATCATGAAAAATAACCTAAATGATATC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGACACC
* * * * * * * * *
62129 AAAATGCATTAAATAACATAACAGTCCTTAGATGATGAAAAATGACCTAAAT-AGCATC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGA-CACC
* * ** * * *** *
62187 AAAATTCATAAAATTACATCTAAGTCCCTATATCATGGTAAATGAA-CTAAATGACATC
1 AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAAT-AACCTAAATGACACC
62245 AAAAT
1 AAAAT
62250 GTAAAAAATC
Statistics
Matches: 349, Mismatches: 91, Indels: 38
0.73 0.19 0.08
Matches are distributed among these distances:
48 15 0.04
50 25 0.07
51 1 0.00
55 3 0.01
56 24 0.07
57 46 0.13
58 191 0.55
59 39 0.11
60 5 0.01
ACGTcount: A:0.48, C:0.17, G:0.11, T:0.25
Consensus pattern (58 bp):
AAAATACATGAAATTACATAAAAGTCCATAGATCATAAAAAATAACCTAAATGACACC
Found at i:61979 original size:48 final size:49
Alignment explanation
Indices: 61879--61981 Score: 129
Period size: 48 Copynumber: 2.1 Consensus size: 49
61869 AAAAGTTTTT
* *
61879 AGATCATGAAAAATAACCTAAATGGCATCAAAATTCACAAAATTATTCCC
1 AGATCATGAAAAATAACCTAAATGACA-CAAAATTCACAAAATTAATCCC
** *
61929 AGATCATGGTAAATGACCTAAATGACA-AAAATTCACAAAATTACAT-CC
1 AGATCATGAAAAATAACCTAAATGACACAAAATTCACAAAATTA-ATCCC
61977 AGATC
1 AGATC
61982 CCTAGATTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
48 23 0.49
49 1 0.02
50 23 0.49
ACGTcount: A:0.48, C:0.19, G:0.10, T:0.23
Consensus pattern (49 bp):
AGATCATGAAAAATAACCTAAATGACACAAAATTCACAAAATTAATCCC
Found at i:62130 original size:115 final size:116
Alignment explanation
Indices: 61929--62250 Score: 411
Period size: 116 Copynumber: 2.8 Consensus size: 116
61919 AATTATTCCC
** * * *
61929 AGATCATGGTAAATGACCTAAATGACA--AAAATTCACAAAATTACATC-CAGATCCCTAGATTA
1 AGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTACATCTAAG-TCCCTAGATCA
* * * *
61991 TGGAAAATACCCTAAATGACATCAAAAT-TATGAAATGATATAAAAGTCCTT
65 TGGAAAATAACCTAAATGACATCAAAATGCATGAAATAACATAAAAGTCCTT
* *
62042 GGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTGCATCTAAGTCCCTAGATCAT
1 AGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCAT
* * * *
62107 GAAAAATAACCTAAATGATATCAAAATGCATTAAATAACATAACAGTCCTT
66 GGAAAATAACCTAAATGACATCAAAATGCATGAAATAACATAAAAGTCCTT
* * * *
62158 AGATGATGAAAAATGACCTAAATAGCATCAAAATTCATAAAATTACATCTAAGTCCCTATATCAT
1 AGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCAT
*
62223 GGTAAATGAA-CTAAATGACATCAAAATG
66 GGAAAAT-AACCTAAATGACATCAAAATG
62251 TAAAAAATCA
Statistics
Matches: 180, Mismatches: 24, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
113 23 0.13
115 54 0.30
116 101 0.56
117 2 0.01
ACGTcount: A:0.46, C:0.17, G:0.11, T:0.25
Consensus pattern (116 bp):
AGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCAT
GGAAAATAACCTAAATGACATCAAAATGCATGAAATAACATAAAAGTCCTT
Found at i:62258 original size:58 final size:58
Alignment explanation
Indices: 61925--62249 Score: 306
Period size: 58 Copynumber: 5.7 Consensus size: 58
61915 ACAAAATTAT
** * *
61925 TCCC-AGATCATGGTAAATGACCTAAATGACA--AAAATTCACAAAATTACATC-CAG
1 TCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAG
* * * * * *
61979 ATCCCTAGATTATGGAAAAT-ACCCTAAATGACATCAAAATT-ATGAAATGATATAAAAG
1 -TCCCTAGATCATGAAAAATGA-CCTAAATGACATCAAAATTCATAAAATTACATCAAAG
* * * * * *
62037 TCCTTGGATCATGAAAAATGACCTAAATGGCATCAAAATTCACAAAATTGCATCTAAG
1 TCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAG
* * * * *
62095 TCCCTAGATCATGAAAAATAACCTAAATGATATCAAAATGCATTAAATAACAT-AACAG
1 TCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAA-AG
* * *
62153 TCCTTAGATGATGAAAAATGACCTAAAT-AGCATCAAAATTCATAAAATTACATCTAAG
1 TCCCTAGATCATGAAAAATGACCTAAATGA-CATCAAAATTCATAAAATTACATCAAAG
* ** *
62211 TCCCTATATCATGGTAAATGAACTAAATGACATCAAAAT
1 TCCCTAGATCATGAAAAATGACCTAAATGACATCAAAAT
62250 GTAAAAAATC
Statistics
Matches: 214, Mismatches: 45, Indels: 19
0.77 0.16 0.07
Matches are distributed among these distances:
55 5 0.02
56 23 0.11
57 43 0.20
58 141 0.66
59 2 0.01
ACGTcount: A:0.46, C:0.18, G:0.11, T:0.26
Consensus pattern (58 bp):
TCCCTAGATCATGAAAAATGACCTAAATGACATCAAAATTCATAAAATTACATCAAAG
Found at i:62283 original size:116 final size:116
Alignment explanation
Indices: 61939--62290 Score: 349
Period size: 116 Copynumber: 3.1 Consensus size: 116
61929 AGATCATGGT
* * *
61939 AAATGACCTAAAT-G-A-CAAAAATTCACAAAATTACATC-CAGATCCCTAGATTATGGAAAATA
1 AAATGACCTAAATAGCATC-AAAATTCACAAAATTACATCTAAG-TCCCTAGATCATGAAAAATA
* * ** * * * * **
62000 CCCTAAATGACATCAAAAT-TATGAAATGATATAAAAGTCCTTGGATCATGAA
64 ACCTAAATGACATCAAAATGCAAAAAATAACATAACAGTCCATAAATCATGAA
* *
62052 AAATGACCTAAATGGCATCAAAATTCACAAAATTGCATCTAAGTCCCTAGATCATGAAAAATAAC
1 AAATGACCTAAATAGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCATGAAAAATAAC
* ** * * *
62117 CTAAATGATATCAAAATGCATTAAATAACATAACAGTCCTTAGATGATGAA
66 CTAAATGACATCAAAATGCAAAAAATAACATAACAGTCCATAAATCATGAA
* * **
62168 AAATGACCTAAATAGCATCAAAATTCATAAAATTACATCTAAGTCCCTATATCATGGTAAATGAA
1 AAATGACCTAAATAGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCATGAAAAAT-AA
* * * **
62233 -CTAAATGACATCAAAATGTAAAAAATCATATGAATGGT-CATAAATCATGAA
65 CCTAAATGACATCAAAATGCAAAAAATAACAT-AACAGTCCATAAATCATGAA
62284 AAATGAC
1 AAATGAC
62291 TAGAATGACC
Statistics
Matches: 202, Mismatches: 30, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
113 13 0.06
114 1 0.00
115 55 0.27
116 127 0.63
117 6 0.03
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.25
Consensus pattern (116 bp):
AAATGACCTAAATAGCATCAAAATTCACAAAATTACATCTAAGTCCCTAGATCATGAAAAATAAC
CTAAATGACATCAAAATGCAAAAAATAACATAACAGTCCATAAATCATGAA
Found at i:65495 original size:14 final size:14
Alignment explanation
Indices: 65476--65503 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
65466 GATTTTCTAC
65476 ATTAAAATTTTAAA
1 ATTAAAATTTTAAA
65490 ATTAAAATTTTAAA
1 ATTAAAATTTTAAA
65504 TATCATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTAAAATTTTAAA
Found at i:68970 original size:97 final size:98
Alignment explanation
Indices: 68800--68991 Score: 278
Period size: 97 Copynumber: 2.0 Consensus size: 98
68790 TGTCAGGCAC
68800 AGGTGTTGGACATGGTACTTCGAAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAA
1 AGGTGTTGGACATGGTACTTCG-AAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAA
* * *
68865 ATAGAAGCGCAATGCTTTTGTAATGCCTTTTTTT
65 ATAAAAGCGCAATGCTTTCGTAATGACTTTTTTT
** * * * * *
68899 AGGTGTTGGAGGTGGTACTTCG-AAAAATAAATAGTCATTGTTACATAGGCTATGATTGACAAAA
1 AGGTGTTGGACATGGTACTTCGAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAAA
68963 TAAAAGCGCAATGCTTTCGTAATGACTTT
66 TAAAAGCGCAATGCTTTCGTAATGACTTT
68992 CTTGAAGATT
Statistics
Matches: 83, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
97 63 0.76
99 20 0.24
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (98 bp):
AGGTGTTGGACATGGTACTTCGAAAAAAAAAAGAGTCATTGCTAAATAGACTATGATTGACAAAA
TAAAAGCGCAATGCTTTCGTAATGACTTTTTTT
Found at i:75522 original size:16 final size:16
Alignment explanation
Indices: 75501--75535 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
75491 TCTAAGAGTC
**
75501 ATTTTAAATGCTAACT
1 ATTTTAAATAATAACT
75517 ATTTTAAATAATAACT
1 ATTTTAAATAATAACT
75533 ATT
1 ATT
75536 CTTGAATGAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.43, C:0.09, G:0.03, T:0.46
Consensus pattern (16 bp):
ATTTTAAATAATAACT
Found at i:77556 original size:25 final size:25
Alignment explanation
Indices: 77524--77586 Score: 81
Period size: 25 Copynumber: 2.5 Consensus size: 25
77514 AAACATCTAT
*
77524 TAAATTGGATGCTGCATGTGTCCAA
1 TAAATTGGATGCTGCATGCGTCCAA
* * *
77549 TAAGTTGGACGCTGCATGCGTCCAT
1 TAAATTGGATGCTGCATGCGTCCAA
*
77574 TAAATTAGATGCT
1 TAAATTGGATGCT
77587 AGTGTCCAAT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (25 bp):
TAAATTGGATGCTGCATGCGTCCAA
Found at i:78364 original size:20 final size:20
Alignment explanation
Indices: 78336--78410 Score: 87
Period size: 20 Copynumber: 3.8 Consensus size: 20
78326 TCATACCCTG
78336 ATGTATCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
78356 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
78376 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
78396 ATGTATCGATACATT
1 ATGTATCGATACATT
78411 ATGTCTTTTT
Statistics
Matches: 43, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.40
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:78403 original size:40 final size:39
Alignment explanation
Indices: 78336--78413 Score: 111
Period size: 40 Copynumber: 2.0 Consensus size: 39
78326 TCATACCCTG
* *
78336 ATGTATCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
78376 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
78414 TCTTTTTACC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:79354 original size:24 final size:24
Alignment explanation
Indices: 79322--79378 Score: 100
Period size: 22 Copynumber: 2.5 Consensus size: 24
79312 AGCCTTTAAC
79322 CATGCATTTTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
79346 CATGCA--TTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
79368 CATGCATTTTT
1 CATGCATTTTT
79379 AACATGTCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 22 0.71
24 9 0.29
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.63
Consensus pattern (24 bp):
CATGCATTTTTTTTTATTATGTTT
Found at i:79385 original size:20 final size:21
Alignment explanation
Indices: 79331--79385 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
79321 CCATGCATTT
**
79331 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
79352 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
79374 -TTTTTAACATGT
1 TTTTTTAACATGT
79386 CCAGCATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:86978 original size:27 final size:27
Alignment explanation
Indices: 86879--87452 Score: 871
Period size: 27 Copynumber: 21.0 Consensus size: 27
86869 TGGCATTTCT
*
86879 TTTTGAAGTCCACAACTCCGTGGCATCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
86907 TTTTAAAGTCCACAACTCCGTGGCACTC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
86935 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
86963 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
** * *
86990 TTCAAAGTCCACAACTCTGTGGCACTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
87017 TTTTAAAGTCCACAACTCCGTGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
*
87045 TTTTAAGTCCACAACTCTGTGGCA-CC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
87071 TTTCAAAGTCCACAACTCCGTGGCACCC
1 TTT-TAAGTCCACAACTCCGTGGCACCC
* * *
87099 TTTTAAGTCCACAACTCCGTAGCGCTC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
87126 TTTTAAAGTCCACAACTCCATGGCACCC
1 TTTT-AAGTCCACAACTCCGTGGCACCC
87154 TCTTTAAGTCCACAACTCCGTGGCACCC
1 T-TTTAAGTCCACAACTCCGTGGCACCC
87182 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
87209 TTTTAAGTCCACAACTCCGTGGCATCTC
1 TTTTAAGTCCACAACTCCGTGGCA-CCC
*
87237 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
87264 TTTTAAGTCCACAACTCCGTAGCACCT
1 TTTTAAGTCCACAACTCCGTGGCACCC
87291 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
87318 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
*
87345 TTTTAAGTCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
87372 TTTTAAGTCCACAACTCCGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
87399 TTTTAAGTCCACAACTCTGTGGCATCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
* *
87426 TTTTAAATCCACAACTCTGTGGCACCC
1 TTTTAAGTCCACAACTCCGTGGCACCC
87453 ATTTCAAAGC
Statistics
Matches: 502, Mismatches: 38, Indels: 13
0.91 0.07 0.02
Matches are distributed among these distances:
26 5 0.01
27 340 0.68
28 154 0.31
29 3 0.01
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (27 bp):
TTTTAAGTCCACAACTCCGTGGCACCC
Found at i:87013 original size:82 final size:81
Alignment explanation
Indices: 86879--87452 Score: 880
Period size: 82 Copynumber: 7.0 Consensus size: 81
86869 TGGCATTTCT
* * *
86879 TTTTGAAGTCCACAACTCCGTGGCATCCTTTTAAAGTCCACAACTCCGTGGCACTCTTTTAAAGT
1 TTTT-AAGTCCACAACTCCGTGGCACCCTTTT-AAGTCCACAACTCTGTGGCACCCTTTT-AAGT
86944 CCACAACTCCGTGGCACCC
63 CCACAACTCCGTGGCACCC
** *
86963 TTTTAAGTCCACAACTCCGTGGCACCCTTCAAAGTCCACAACTCTGTGGCACTCTTTTAAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTT-AAGTCC
87028 ACAACTCCGTGGCACCC
65 ACAACTCCGTGGCACCC
* * *
87045 TTTTAAGTCCACAACTCTGTGGCA-CCTTTCAAAGTCCACAACTCCGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCACCCTTT-TAAGTCCACAACTCTGTGGCACCCTTTTAAGTCC
* * *
87109 ACAACTCCGTAGCGCTC
65 ACAACTCCGTGGCACCC
* *
87126 TTTTAAAGTCCACAACTCCATGGCACCCTCTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTC
1 TTTT-AAGTCCACAACTCCGTGGCACCCT-TTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTC
87191 CACAACTCCGTGGCACCC
64 CACAACTCCGTGGCACCC
*
87209 TTTTAAGTCCACAACTCCGTGGCATCTCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCC
1 TTTTAAGTCCACAACTCCGTGGCA-CCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCC
* *
87274 ACAACTCCGTAGCACCT
65 ACAACTCCGTGGCACCC
87291 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
*
87356 CAACTCTGTGGCACCC
66 CAACTCCGTGGCACCC
* *
87372 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCATCCTTTTAAATCCA
1 TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
*
87437 CAACTCTGTGGCACCC
66 CAACTCCGTGGCACCC
87453 ATTTCAAAGC
Statistics
Matches: 457, Mismatches: 28, Indels: 13
0.92 0.06 0.03
Matches are distributed among these distances:
81 160 0.35
82 210 0.46
83 81 0.18
84 6 0.01
ACGTcount: A:0.24, C:0.34, G:0.14, T:0.28
Consensus pattern (81 bp):
TTTTAAGTCCACAACTCCGTGGCACCCTTTTAAGTCCACAACTCTGTGGCACCCTTTTAAGTCCA
CAACTCCGTGGCACCC
Found at i:87490 original size:32 final size:32
Alignment explanation
Indices: 87435--88100 Score: 1100
Period size: 32 Copynumber: 20.8 Consensus size: 32
87425 CTTTTAAATC
* *
87435 CACAACTCTGTGGC-ACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87466 CACAAGTCGGTGGCAACCCATTTCAAAGACCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87498 CACAAGTCGGTGGTAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87530 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87562 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87594 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
87626 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87658 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87690 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87722 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** *
87754 CACAAGTCGGAAGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
87786 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87818 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87850 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
87882 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
87914 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
87946 CACAAGTCGGTGGCAACCCATTTCAAAACCCC
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
87978 CACAAGTCGGTGGCAACCCATTCCAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
* *
88010 CACAAGTCGGTGGCAACTCATTTCAAAGGCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
*
88042 CACAAGTCGGTGGCAACCCATTTAAAAGCCCA
1 CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
** * *
88074 TGCAAGTCAGTGGCAACCCTTTTCAAA
1 CACAAGTCGGTGGCAACCCATTTCAAA
88101 TCACCATTTT
Statistics
Matches: 602, Mismatches: 32, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
31 12 0.02
32 590 0.98
ACGTcount: A:0.32, C:0.35, G:0.18, T:0.15
Consensus pattern (32 bp):
CACAAGTCGGTGGCAACCCATTTCAAAGCCCA
Found at i:88656 original size:20 final size:20
Alignment explanation
Indices: 88627--88702 Score: 89
Period size: 20 Copynumber: 3.8 Consensus size: 20
88617 TTCATACCCT
88627 AATGTATCGATACATTTTTC
1 AATGTATCGATACATTTTTC
* * * *
88647 AATATATCGATACATGTATG
1 AATGTATCGATACATTTTTC
* * *
88667 AATGTATCGATATATTCTAC
1 AATGTATCGATACATTTTTC
88687 AATGTATCGATACATT
1 AATGTATCGATACATT
88703 ATGTCTTTTT
Statistics
Matches: 44, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
20 44 1.00
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (20 bp):
AATGTATCGATACATTTTTC
Found at i:88695 original size:40 final size:39
Alignment explanation
Indices: 88627--88705 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 39
88617 TTCATACCCT
* *
88627 AATGTATCGATACATTTTTCAATATATCGATACATGTATG
1 AATGTATCGATACATTCTACAATATATCGATACAT-TATG
* *
88667 AATGTATCGATATATTCTACAATGTATCGATACATTATG
1 AATGTATCGATACATTCTACAATATATCGATACATTATG
88706 TCTTTTTACC
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
39 4 0.11
40 31 0.89
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (39 bp):
AATGTATCGATACATTCTACAATATATCGATACATTATG
Found at i:89646 original size:24 final size:24
Alignment explanation
Indices: 89614--89670 Score: 100
Period size: 22 Copynumber: 2.5 Consensus size: 24
89604 AGCCTTTGAC
89614 CATGCATTTTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
89638 CATGCA--TTTTTTTATTATGTTT
1 CATGCATTTTTTTTTATTATGTTT
89660 CATGCATTTTT
1 CATGCATTTTT
89671 AACATGTCCA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 22 0.71
24 9 0.29
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.63
Consensus pattern (24 bp):
CATGCATTTTTTTTTATTATGTTT
Found at i:89677 original size:20 final size:21
Alignment explanation
Indices: 89623--89677 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
89613 CCATGCATTT
**
89623 TTTTTTATTATGTTTCATGCA
1 TTTTTTAACATGTTTCATGCA
**
89644 TTTTTTTATTATGTTTCATGCA
1 -TTTTTTAACATGTTTCATGCA
89666 -TTTTTAACATGT
1 TTTTTTAACATGT
89678 CCAGTATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 10 0.32
22 21 0.68
ACGTcount: A:0.20, C:0.09, G:0.09, T:0.62
Consensus pattern (21 bp):
TTTTTTAACATGTTTCATGCA
Found at i:93189 original size:142 final size:142
Alignment explanation
Indices: 92933--93220 Score: 432
Period size: 142 Copynumber: 2.0 Consensus size: 142
92923 GTAAATTATA
* * * *
92933 TTATGTTTCCTTTTATGTTTAAGGCTTCTACTGTTGGGCTTGATAAAAGTCTGTACTTTATTGAA
1 TTATGTTTCCTTCTATGTTTAAGACTTCTAATGCTGGGCTTGATAAAAGTCTGTACTTTATTGAA
* * * *
92998 GTATATTCAATGTATAAAGTGGCGTGCCAATTTGGGTATGATCAAATGGTTCCACGTGAGCCTTT
66 GTATATTCAATGTATAAAGTAGCGTGCCAATTTAGGTATGATCAAATGGTTCCACATGAGCCTCT
93063 TACACCATTAAT
131 TACACCATTAAT
* * *
93075 TTATGTTTCCTTCTATGTTTGAGACTTTTAATGCTGGGCTTGATAAAATTCTGTACTTTATTGAA
1 TTATGTTTCCTTCTATGTTTAAGACTTCTAATGCTGGGCTTGATAAAAGTCTGTACTTTATTGAA
* * * * *
93140 GTATATTCATTGTATAAAGTAGTGTGCCAATTTAGGTTTGATTAGATGGTTCCACATGAGCCTCT
66 GTATATTCAATGTATAAAGTAGCGTGCCAATTTAGGTATGATCAAATGGTTCCACATGAGCCTCT
93205 TACACCATTAAT
131 TACACCATTAAT
93217 TTAT
1 TTAT
93221 CACTTTGCTC
Statistics
Matches: 130, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
142 130 1.00
ACGTcount: A:0.26, C:0.14, G:0.18, T:0.42
Consensus pattern (142 bp):
TTATGTTTCCTTCTATGTTTAAGACTTCTAATGCTGGGCTTGATAAAAGTCTGTACTTTATTGAA
GTATATTCAATGTATAAAGTAGCGTGCCAATTTAGGTATGATCAAATGGTTCCACATGAGCCTCT
TACACCATTAAT
Found at i:102146 original size:13 final size:13
Alignment explanation
Indices: 102128--102154 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
102118 AAATAGGGTA
102128 ATATTATACTAAT
1 ATATTATACTAAT
102141 ATATTATACTAAT
1 ATATTATACTAAT
102154 A
1 A
102155 GAATAGATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATTATACTAAT
Found at i:102188 original size:31 final size:30
Alignment explanation
Indices: 102132--102196 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 30
102122 AGGGTAATAT
* * *
102132 TATACTAATATATTATACTAATAGAATAGA
1 TATACTAATAGAATATACTAATAGAATAAA
*
102162 TATACTAAATAGAATATAGTAATAGAATAAA
1 TATACT-AATAGAATATACTAATAGAATAAA
102193 TATA
1 TATA
102197 ACATATAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.34
Consensus pattern (30 bp):
TATACTAATAGAATATACTAATAGAATAAA
Found at i:102217 original size:11 final size:11
Alignment explanation
Indices: 102191--102234 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
102181 TAATAGAATA
*
102191 AATATAACATAT
1 AATATAATA-AT
102203 AATATAATAAT
1 AATATAATAAT
*
102214 AATACAATAAT
1 AATATAATAAT
102225 AATATAATAA
1 AATATAATAA
102235 ATAGAATAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
11 21 0.72
12 8 0.28
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (11 bp):
AATATAATAAT
Found at i:102242 original size:20 final size:21
Alignment explanation
Indices: 102161--102262 Score: 100
Period size: 22 Copynumber: 4.8 Consensus size: 21
102151 AATAGAATAG
*
102161 ATATACTAAATAGAATATAGTA
1 ATATAATAAATAGAATATA-TA
* * *
102183 ATAGAATAAATATAACATATA
1 ATATAATAAATAGAATATATA
*
102204 ATATAATAATAATACAATA-ATA
1 ATATAAT-A-AATAGAATATATA
*
102226 ATATAATAAATAGAATAGA-A
1 ATATAATAAATAGAATATATA
*
102246 AAATAATAAATAGAATA
1 ATATAATAAATAGAATA
102263 GAAAAAAATA
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
20 25 0.37
21 10 0.15
22 26 0.38
23 7 0.10
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (21 bp):
ATATAATAAATAGAATATATA
Found at i:102263 original size:20 final size:20
Alignment explanation
Indices: 102228--102272 Score: 83
Period size: 20 Copynumber: 2.3 Consensus size: 20
102218 CAATAATAAT
102228 ATAATAAATAGAATAGAAAA
1 ATAATAAATAGAATAGAAAA
102248 ATAATAAATAGAATAGAAAA
1 ATAATAAATAGAATAGAAAA
102268 A-AATA
1 ATAATA
102273 TAATTAAGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 4 0.16
20 21 0.84
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (20 bp):
ATAATAAATAGAATAGAAAA
Found at i:102290 original size:20 final size:20
Alignment explanation
Indices: 102265--102305 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
102255 ATAGAATAGA
* *
102265 AAAAAATATAATTAAGATAT
1 AAAAAAGATAAATAAGATAT
*
102285 AAAAAAGATAAATAATATAT
1 AAAAAAGATAAATAAGATAT
102305 A
1 A
102306 GATAAATTAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (20 bp):
AAAAAAGATAAATAAGATAT
Found at i:102310 original size:15 final size:15
Alignment explanation
Indices: 102201--102328 Score: 56
Period size: 15 Copynumber: 8.5 Consensus size: 15
102191 AATATAACAT
102201 ATAATATAAT-AATA-
1 ATAA-ATAATAAATAG
102215 ATACAATAATAATATA-
1 ATA-AATAATAA-ATAG
*
102231 ATAAAT-A-GAATAG
1 ATAAATAATAAATAG
*
102244 AAAAATAATAAATAG
1 ATAAATAATAAATAG
*
102259 AATAGAA-AA-AAATATA
1 -ATA-AATAATAAATA-G
*
102275 ATTAAGAT-ATAAAAAAG
1 A-TAA-ATAAT-AAATAG
*
102292 ATAAATAATATATAG
1 ATAAATAATAAATAG
* *
102307 ATAAATTATAAATAT
1 ATAAATAATAAATAG
102322 ATAAATA
1 ATAAATA
102329 TTTTTATATT
Statistics
Matches: 86, Mismatches: 13, Indels: 29
0.67 0.10 0.23
Matches are distributed among these distances:
12 3 0.03
13 6 0.07
14 10 0.12
15 41 0.48
16 19 0.22
17 3 0.03
18 4 0.05
ACGTcount: A:0.66, C:0.01, G:0.05, T:0.28
Consensus pattern (15 bp):
ATAAATAATAAATAG
Found at i:106462 original size:14 final size:15
Alignment explanation
Indices: 106443--106473 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
106433 ATTGATTATT
106443 TATTTATTT-TTAAA
1 TATTTATTTATTAAA
106457 TATTTATTTATTAAA
1 TATTTATTTATTAAA
106472 TA
1 TA
106474 ATTGTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.56
15 7 0.44
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TATTTATTTATTAAA
Found at i:107042 original size:23 final size:22
Alignment explanation
Indices: 107011--107053 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
107001 ATTAACAAAA
* *
107011 GAAACAAAAATGAAAAGAAATTT
1 GAAAAAAAAAAGAAAA-AAATTT
107034 GAAAAAAAAAAGAAAAAAAT
1 GAAAAAAAAAAGAAAAAAAT
107054 CTAAAAGAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12
Consensus pattern (22 bp):
GAAAAAAAAAAGAAAAAAATTT
Found at i:107525 original size:11 final size:10
Alignment explanation
Indices: 107505--107558 Score: 63
Period size: 10 Copynumber: 5.2 Consensus size: 10
107495 TAAATTTTAA
107505 TTTTTTAATT
1 TTTTTTAATT
107515 TTTTCTTAATT
1 TTTT-TTAATT
*
107526 TTTTTTAAAT
1 TTTTTTAATT
*
107536 TTTTTGAATT
1 TTTTTTAATT
*
107546 ATTTTTATATT
1 TTTTTTA-ATT
107557 TT
1 TT
107559 AAAATTTCTC
Statistics
Matches: 36, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
10 22 0.61
11 14 0.39
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.74
Consensus pattern (10 bp):
TTTTTTAATT
Found at i:107528 original size:20 final size:19
Alignment explanation
Indices: 107499--107558 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 19
107489 TTATCTTAAA
107499 TTTTAA-TTTTTTAATTTT
1 TTTTAATTTTTTTAATTTT
*
107517 TTCTTAATTTTTTTTAAATTT
1 TT-TTAA-TTTTTTTAATTTT
*
107538 TTTGAATTATTTTTATATTTT
1 TTTTAATT-TTTTTA-ATTTT
107559 AAAATTTCTC
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 2 0.06
19 6 0.18
20 9 0.26
21 17 0.50
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTAATTTTTTTAATTTT
Found at i:107698 original size:19 final size:20
Alignment explanation
Indices: 107670--107721 Score: 81
Period size: 19 Copynumber: 2.7 Consensus size: 20
107660 CCAAAGCTTT
107670 AATCGAAATCACAA-TCCCA
1 AATCGAAATCACAAGTCCCA
*
107689 AATTGAAATCA-AAGTCCCA
1 AATCGAAATCACAAGTCCCA
107708 AATCGAAATCACAA
1 AATCGAAATCACAA
107722 CTCTAAATCA
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 2 0.07
19 25 0.86
20 2 0.07
ACGTcount: A:0.50, C:0.25, G:0.08, T:0.17
Consensus pattern (20 bp):
AATCGAAATCACAAGTCCCA
Found at i:109258 original size:21 final size:21
Alignment explanation
Indices: 109232--109271 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
109222 CTATTTTTTA
*
109232 TTTTTCTTTCTCAT-TTGATTT
1 TTTTTCCTT-TCATATTGATTT
109253 TTTTTCCTTTCATATTGAT
1 TTTTTCCTTTCATATTGAT
109272 CATTTTACTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.12, C:0.15, G:0.05, T:0.68
Consensus pattern (21 bp):
TTTTTCCTTTCATATTGATTT
Found at i:109277 original size:21 final size:21
Alignment explanation
Indices: 109231--109277 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
109221 GCTATTTTTT
* *
109231 ATTTTTCTTTCTCATTTGATT
1 ATTTTTCCTTCTCATTTGATC
*
109252 TTTTTTCCTT-TCATATTGATC
1 ATTTTTCCTTCTCAT-TTGATC
109273 ATTTT
1 ATTTT
109278 ACTTTCGTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.15, C:0.15, G:0.04, T:0.66
Consensus pattern (21 bp):
ATTTTTCCTTCTCATTTGATC
Found at i:110055 original size:15 final size:15
Alignment explanation
Indices: 110023--110073 Score: 59
Period size: 15 Copynumber: 3.4 Consensus size: 15
110013 TTATACAAAA
* * *
110023 ATTAATATTTTAAAT
1 ATTAAAATTTTTATT
110038 ATTAAAATTTTTATT
1 ATTAAAATTTTTATT
110053 ATTATAAATTTTT-TT
1 ATTA-AAATTTTTATT
110068 ATTAAA
1 ATTAAA
110074 TTAATATTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
14 2 0.06
15 22 0.69
16 8 0.25
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (15 bp):
ATTAAAATTTTTATT
Found at i:110430 original size:18 final size:18
Alignment explanation
Indices: 110403--110443 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
110393 AATTAATGAG
*
110403 TTTTCTACCGTTGATGTC
1 TTTTCCACCGTTGATGTC
110421 TTTTCCACCGTTGATGTC
1 TTTTCCACCGTTGATGTC
110439 TTTTC
1 TTTTC
110444 AAACATTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.10, C:0.24, G:0.15, T:0.51
Consensus pattern (18 bp):
TTTTCCACCGTTGATGTC
Found at i:110946 original size:25 final size:23
Alignment explanation
Indices: 110878--110953 Score: 55
Period size: 25 Copynumber: 3.1 Consensus size: 23
110868 ACTTATGAAA
* *
110878 TTTAAAATAGATTTAACTTTTAATAA
1 TTTAAAATA-ATATAA-TTTTAAT-T
*
110904 ATTAAAATAATATAATTTATATATT
1 TTTAAAATAATATAATTT-TA-ATT
*
110929 TTTAAATATAA-ATTATTTTAATT
1 TTTAAA-ATAATATAATTTTAATT
110952 TT
1 TT
110954 ATACCAATCA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
23 5 0.12
24 5 0.12
25 18 0.43
26 14 0.33
ACGTcount: A:0.46, C:0.01, G:0.01, T:0.51
Consensus pattern (23 bp):
TTTAAAATAATATAATTTTAATT
Found at i:111222 original size:21 final size:21
Alignment explanation
Indices: 111165--111222 Score: 62
Period size: 21 Copynumber: 2.8 Consensus size: 21
111155 TATTATTTTC
* *
111165 ATAATTAAAATAATCATAATA
1 ATAATTAATATAATTATAATA
* * * *
111186 ATATTTATTATGATTATAATT
1 ATAATTAATATAATTATAATA
111207 ATAATTAATATAATTA
1 ATAATTAATATAATTA
111223 ATATTATTTA
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
ATAATTAATATAATTATAATA
Found at i:111228 original size:15 final size:15
Alignment explanation
Indices: 111165--111222 Score: 50
Period size: 15 Copynumber: 4.1 Consensus size: 15
111155 TATTATTTTC
* *
111165 ATAATTAAAATAATC
1 ATAATTAATATAATT
111180 ATAA-TAATAT--TT
1 ATAATTAATATAATT
* * *
111192 ATTATGATTATAATT
1 ATAATTAATATAATT
111207 ATAATTAATATAATT
1 ATAATTAATATAATT
111222 A
1 A
111223 ATATTATTTA
Statistics
Matches: 32, Mismatches: 8, Indels: 6
0.70 0.17 0.13
Matches are distributed among these distances:
12 4 0.12
13 4 0.12
14 5 0.16
15 19 0.59
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:111571 original size:11 final size:12
Alignment explanation
Indices: 111548--111580 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
111538 TAAATTATTA
111548 TTTATTATAATT
1 TTTATTATAATT
111560 TTTATT-TAATT
1 TTTATTATAATT
*
111571 TTAATTATAA
1 TTTATTATAA
111581 AATATATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (12 bp):
TTTATTATAATT
Found at i:111603 original size:21 final size:20
Alignment explanation
Indices: 111577--111619 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
111567 AATTTTAATT
*
111577 ATAAAATATATAAATATTAAA
1 ATAAAAAATATAAA-ATTAAA
*
111598 ATAAAAAATATAAAATTTAA
1 ATAAAAAATATAAAATTAAA
111618 AT
1 AT
111620 GATAATATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (20 bp):
ATAAAAAATATAAAATTAAA
Found at i:112225 original size:23 final size:23
Alignment explanation
Indices: 112174--112223 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 23
112164 GAAAAAAAAA
*
112174 TATTTAATATATTTTAAATATTT
1 TATTTAATATAGTTTAAATATTT
112197 TATTTAA-ATAGTTTAAAT-TATT
1 TATTTAATATAGTTTAAATAT-TT
112219 TATTT
1 TATTT
112224 TATAATTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 17 0.68
23 7 0.28
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (23 bp):
TATTTAATATAGTTTAAATATTT
Found at i:113880 original size:15 final size:15
Alignment explanation
Indices: 113862--113917 Score: 53
Period size: 16 Copynumber: 3.7 Consensus size: 15
113852 AATAAAAAAT
113862 AAATATTAACATATA
1 AAATATTAACATATA
*
113877 AAATATGTAATA-AT-
1 AAATAT-TAACATATA
*
113891 AAATATTAATATAATA
1 AAATATTAACAT-ATA
*
113907 AAAAATTAACA
1 AAATATTAACA
113918 ATGCAACTAT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
13 5 0.15
14 6 0.18
15 10 0.29
16 13 0.38
ACGTcount: A:0.62, C:0.04, G:0.02, T:0.32
Consensus pattern (15 bp):
AAATATTAACATATA
Found at i:113894 original size:14 final size:13
Alignment explanation
Indices: 113859--113901 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
113849 ATAAATAAAA
*
113859 AATAAATATTAAC
1 AATAAATATTAAT
113872 ATATAAAATATGTAAT
1 A-AT-AAATAT-TAAT
113888 AATAAATATTAAT
1 AATAAATATTAAT
113901 A
1 A
113902 TAATAAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
13 6 0.23
14 8 0.31
15 8 0.31
16 4 0.15
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (13 bp):
AATAAATATTAAT
Found at i:118535 original size:108 final size:109
Alignment explanation
Indices: 118346--118566 Score: 327
Period size: 108 Copynumber: 2.0 Consensus size: 109
118336 TTGTAAACAG
* * ** *
118346 AGAACAAACCTGGAGGGCGAAGAGAACAATGAAAGCTTATGCTTGCAGTTAGTCCCTGTTGATGA
1 AGAACAAACCTGGAGGCCAAAGAGAACAATGAAAGCTTAAACTTGCAGTTAGTACCTGTTGATGA
*
118411 GTCAGAGTCTTCTGAGAAAACCAAG-CAAGTTCCAAAGGTAAGA
66 GGCAGAGTCTTCTGAGAAAACCAAGACAAGTTCCAAAGGTAAGA
* * *
118454 AGAACAAACTTGGAGGCCAAAGAGAACAATGAAAGCTTAAATTTGCAGTTAGTACCTGTTTATGA
1 AGAACAAACCTGGAGGCCAAAGAGAACAATGAAAGCTTAAACTTGCAGTTAGTACCTGTTGATGA
*
118519 GGCTGAGTCTTCTGAGAAAACCAAGAAACAAGTTCCAAAGGTAAGA
66 GGCAGAGTCTTCTGAGAAAACCAAG--ACAAGTTCCAAAGGTAAGA
118565 AG
1 AG
118567 TCTCAAGTCC
Statistics
Matches: 100, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
108 80 0.80
111 20 0.20
ACGTcount: A:0.38, C:0.16, G:0.24, T:0.21
Consensus pattern (109 bp):
AGAACAAACCTGGAGGCCAAAGAGAACAATGAAAGCTTAAACTTGCAGTTAGTACCTGTTGATGA
GGCAGAGTCTTCTGAGAAAACCAAGACAAGTTCCAAAGGTAAGA
Found at i:121950 original size:10 final size:10
Alignment explanation
Indices: 121927--121961 Score: 52
Period size: 10 Copynumber: 3.4 Consensus size: 10
121917 TACAAATATA
121927 TTAAATTTTAT
1 TTAAATTTT-T
121938 TTAAATTTTT
1 TTAAATTTTT
*
121948 TTAAAATTTT
1 TTAAATTTTT
121958 TTAA
1 TTAA
121962 TATATTCAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 14 0.61
11 9 0.39
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTAAATTTTT
Found at i:124605 original size:4 final size:4
Alignment explanation
Indices: 124596--124629 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
124586 TCATGGTGAG
*
124596 AAAT AAAT AAAT AAAT AAAT AAAT AAAC AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
124630 GAAATAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:125501 original size:20 final size:20
Alignment explanation
Indices: 125476--125520 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 20
125466 TAAATAATTT
125476 ATATAAAA-TTATATAAATAA
1 ATATAAAAGTTA-ATAAATAA
*
125496 ATATAAAAGTTAGTAAATAA
1 ATATAAAAGTTAATAAATAA
125516 ATATA
1 ATATA
125521 TTTATTTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 20 0.87
21 3 0.13
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
ATATAAAAGTTAATAAATAA
Found at i:125832 original size:3 final size:3
Alignment explanation
Indices: 125824--125859 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
125814 ATCTAACAAG
125824 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
125860 GTATAGTTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:129437 original size:23 final size:23
Alignment explanation
Indices: 129411--129458 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
129401 TAGTTGTAAA
* * *
129411 TTTCTTTTTTTCCTTTTAGTCTC
1 TTTCTTATTCTCCTCTTAGTCTC
*
129434 TTTCTTATTCTCCTCTTATTCTC
1 TTTCTTATTCTCCTCTTAGTCTC
129457 TT
1 TT
129459 CTAGGTCTCT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.06, C:0.25, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTCTTATTCTCCTCTTAGTCTC
Found at i:131078 original size:36 final size:38
Alignment explanation
Indices: 131038--131109 Score: 96
Period size: 36 Copynumber: 1.9 Consensus size: 38
131028 AAATTAAATT
131038 AAATTTAA-ATATAATATTAATATTAT-A-TTTATAAAA
1 AAATTTAATATATAATATT-ATATTATAATTTTATAAAA
* *
131074 AAATTTAATTTATAATATTTTATTATAATTTTATAA
1 AAATTTAATATATAATATTATATTATAATTTTATAA
131110 TTATTTAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 14 0.45
37 10 0.32
38 7 0.23
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (38 bp):
AAATTTAATATATAATATTATATTATAATTTTATAAAA
Found at i:131880 original size:3 final size:3
Alignment explanation
Indices: 131872--131902 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
131862 CATTTTTGTA
131872 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
131903 CAAGTTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:132543 original size:10 final size:9
Alignment explanation
Indices: 132517--132549 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 9
132507 TAAAAATATA
132517 TAAATATTT
1 TAAATATTT
132526 T-AATATTT
1 TAAATATTT
132534 TAATATATTT
1 TAA-ATATTT
132544 TAAATA
1 TAAATA
132550 ATAATTTAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 8 0.36
9 5 0.23
10 9 0.41
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (9 bp):
TAAATATTT
Found at i:132578 original size:18 final size:18
Alignment explanation
Indices: 132555--132600 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
132545 AAATAATAAT
132555 TTAAATTATT-ATTTAAAC
1 TTAAATT-TTAATTTAAAC
*
132573 TTAAATTTTAATTTTAAC
1 TTAAATTTTAATTTAAAC
132591 TTAAAATTTT
1 TT-AAATTTT
132601 TTACTTTTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 2 0.08
18 16 0.64
19 7 0.28
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.54
Consensus pattern (18 bp):
TTAAATTTTAATTTAAAC
Found at i:132806 original size:2 final size:2
Alignment explanation
Indices: 132801--132844 Score: 88
Period size: 2 Copynumber: 22.0 Consensus size: 2
132791 TATTACACAC
132801 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
132843 AT
1 AT
132845 CTAAACATAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 42 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:140579 original size:22 final size:22
Alignment explanation
Indices: 140549--140591 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
140539 AATATTATCG
140549 ATATAAAAAAAATAATATAAAC
1 ATATAAAAAAAATAATATAAAC
* **
140571 ATATTAAAATCATAATATAAA
1 ATATAAAAAAAATAATATAAA
140592 AATTAATATA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.05, G:0.00, T:0.28
Consensus pattern (22 bp):
ATATAAAAAAAATAATATAAAC
Found at i:141233 original size:30 final size:31
Alignment explanation
Indices: 141176--141250 Score: 78
Period size: 35 Copynumber: 2.3 Consensus size: 31
141166 GATTTAATTT
*
141176 AAAAATTTAAATTATTGTTAATAAATTAATA
1 AAAAATTTAAAATATTGTTAATAAATTAATA
* *
141207 AAAAATTTAAAAATATTTTTATAATTAAATTAAAA
1 AAAAATTT-AAAATA-TTGT-TAA-TAAATTAATA
141242 TAAAAATTT
1 -AAAAATTT
141251 TTATTATTAA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
31 8 0.22
32 5 0.14
33 3 0.08
34 3 0.08
35 9 0.25
36 8 0.22
ACGTcount: A:0.57, C:0.00, G:0.01, T:0.41
Consensus pattern (31 bp):
AAAAATTTAAAATATTGTTAATAAATTAATA
Found at i:142025 original size:18 final size:18
Alignment explanation
Indices: 141990--142045 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 18
141980 ATGAACATAC
*
141990 AAATA-ATTAATATATAT
1 AAATATATTAAAATATAT
142007 AAATATATTAAAATCTATAT
1 AAATATATTAAAA--TATAT
142027 AAATAT-TATAAAATATAT
1 AAATATAT-TAAAATATAT
142045 A
1 A
142046 TTAAATAATA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
17 5 0.15
18 12 0.35
19 1 0.03
20 16 0.47
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (18 bp):
AAATATATTAAAATATAT
Found at i:142036 original size:11 final size:11
Alignment explanation
Indices: 141998--142076 Score: 71
Period size: 11 Copynumber: 7.5 Consensus size: 11
141988 ACAAATAATT
141998 AATA-TATATA
1 AATATTATATA
142008 AATA-TAT-TA
1 AATATTATATA
142017 AA-ATCTATATA
1 AATAT-TATATA
142028 AATATTATA-A
1 AATATTATATA
142038 AATA-TATATTA
1 AATATTATA-TA
*
142049 AATAATAATATA
1 AAT-ATTATATA
*
142061 AATATGATATA
1 AATATTATATA
142072 AATAT
1 AATAT
142077 GTAAATATTA
Statistics
Matches: 59, Mismatches: 2, Indels: 15
0.78 0.03 0.20
Matches are distributed among these distances:
8 1 0.02
9 8 0.14
10 15 0.25
11 24 0.41
12 8 0.14
13 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (11 bp):
AATATTATATA
Found at i:142077 original size:11 final size:10
Alignment explanation
Indices: 141998--142076 Score: 81
Period size: 10 Copynumber: 7.5 Consensus size: 10
141988 ACAAATAATT
141998 AATATATATA
1 AATATATATA
142008 AATATAT-TAA
1 AATATATAT-A
*
142018 AATCTATATA
1 AATATATATA
142028 AATAT-TATAA
1 AATATATAT-A
142038 AATATATATTA
1 AATATATA-TA
142049 AATAATAATATA
1 AAT-AT-ATATA
142061 AATATGATATA
1 AATAT-ATATA
142072 AATAT
1 AATAT
142077 GTAAATATTA
Statistics
Matches: 59, Mismatches: 3, Indels: 13
0.79 0.04 0.17
Matches are distributed among these distances:
9 4 0.07
10 25 0.42
11 19 0.32
12 8 0.14
13 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.01, T:0.39
Consensus pattern (10 bp):
AATATATATA
Found at i:142456 original size:16 final size:17
Alignment explanation
Indices: 142427--142459 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
142417 ATTTATTTTT
142427 ATTTATAAATATTTAAA
1 ATTTATAAATATTTAAA
142444 ATTTATAAA-ATTTAAA
1 ATTTATAAATATTTAAA
142460 GAGAACAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
ATTTATAAATATTTAAA
Found at i:142477 original size:6 final size:6
Alignment explanation
Indices: 142466--142498 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
142456 TAAAGAGAAC
142466 AATTTT AATTTT AA-TTT -ATTTT AATTTT AATTT
1 AATTTT AATTTT AATTTT AATTTT AATTTT AATTT
142499 AAAAAAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
4 1 0.04
5 6 0.24
6 18 0.72
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (6 bp):
AATTTT
Found at i:142488 original size:16 final size:16
Alignment explanation
Indices: 142467--142499 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
142457 AAAGAGAACA
142467 ATTTTAATTTTAATTT
1 ATTTTAATTTTAATTT
142483 ATTTTAATTTTAATTT
1 ATTTTAATTTTAATTT
142499 A
1 A
142500 AAAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
ATTTTAATTTTAATTT
Found at i:143122 original size:16 final size:15
Alignment explanation
Indices: 143101--143135 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
143091 TAATTTTGAC
143101 TTATTTGTTCATATAT
1 TTATTTGTTCAT-TAT
*
143117 TTATTTGTTTATTAT
1 TTATTTGTTCATTAT
143132 TTAT
1 TTAT
143136 AAATATATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 7 0.39
16 11 0.61
ACGTcount: A:0.23, C:0.03, G:0.06, T:0.69
Consensus pattern (15 bp):
TTATTTGTTCATTAT
Found at i:143160 original size:22 final size:23
Alignment explanation
Indices: 143105--143166 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
143095 TTTGACTTAT
* * *
143105 TTGTTCATATATTTATTTGTTTA
1 TTGTTCATAAATATATTTGTTAA
* *
143128 TTATTTATAAATATATTT-TTAA
1 TTGTTCATAAATATATTTGTTAA
143150 TTGTTCATAAATATATT
1 TTGTTCATAAATATATT
143167 AATATTTACG
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.60
Consensus pattern (23 bp):
TTGTTCATAAATATATTTGTTAA
Found at i:144418 original size:9 final size:9
Alignment explanation
Indices: 144404--144459 Score: 55
Period size: 9 Copynumber: 6.2 Consensus size: 9
144394 ACAATTAAAA
144404 TAATATATT
1 TAATATATT
144413 TAATATACATAT
1 TAATAT--AT-T
144425 T-ATATATT
1 TAATATATT
*
144433 TAAAAT-TT
1 TAATATATT
144441 TAATATATT
1 TAATATATT
144450 TAATA-ATT
1 TAATATATT
144458 TA
1 TA
144460 TATTATTCTG
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
8 14 0.35
9 18 0.45
11 6 0.15
12 2 0.05
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (9 bp):
TAATATATT
Found at i:144459 original size:17 final size:17
Alignment explanation
Indices: 144404--144459 Score: 53
Period size: 17 Copynumber: 3.1 Consensus size: 17
144394 ACAATTAAAA
144404 TAATATATTTAATATACATAT
1 TAATATATTT-A-ATA-AT-T
144425 T-ATATATTTAA-AATTT
1 TAATATATTTAATAA-TT
144441 TAATATATTTAATAATT
1 TAATATATTTAATAATT
144458 TA
1 TA
144460 TATTATTCTG
Statistics
Matches: 32, Mismatches: 0, Indels: 10
0.76 0.00 0.24
Matches are distributed among these distances:
16 3 0.09
17 16 0.50
18 3 0.09
19 1 0.03
20 8 0.25
21 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
TAATATATTTAATAATT
Found at i:144638 original size:2 final size:2
Alignment explanation
Indices: 144633--144678 Score: 92
Period size: 2 Copynumber: 23.0 Consensus size: 2
144623 TTCAAAAAAG
144633 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
144675 AT AT
1 AT AT
144679 TGGGTATGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 44 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:145245 original size:2 final size:2
Alignment explanation
Indices: 145238--145268 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
145228 TTATACATTC
*
145238 AT AT AT AT AT AT AT AT AT AT AT AT GT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
145269 GTACGATCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:146001 original size:19 final size:17
Alignment explanation
Indices: 145977--146012 Score: 54
Period size: 19 Copynumber: 2.0 Consensus size: 17
145967 AAGATTATAA
145977 TATATATTTATATTATATT
1 TATATATTT-TATT-TATT
145996 TATATATTTTATTTATT
1 TATATATTTTATTTATT
146013 ATAATAATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 4 0.24
19 9 0.53
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TATATATTTTATTTATT
Found at i:146040 original size:9 final size:9
Alignment explanation
Indices: 145972--146046 Score: 57
Period size: 9 Copynumber: 8.2 Consensus size: 9
145962 ACACGAAGAT
*
145972 TATAATATA
1 TATATTATA
145981 TAT-TTATA
1 TATATTATA
145989 TTATATT-TA
1 -TATATTATA
*
145998 TATATTTTA
1 TATATTATA
*
146007 TTTATTATA
1 TATATTATA
*
146016 -ATAATGTTTAA
1 TAT-AT-TAT-A
146027 TATATTATA
1 TATATTATA
146036 TATATTATA
1 TATATTATA
146045 TA
1 TA
146047 AATTTTTTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
8 11 0.21
9 31 0.58
10 6 0.11
11 3 0.06
12 2 0.04
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.57
Consensus pattern (9 bp):
TATATTATA
Found at i:150645 original size:5 final size:5
Alignment explanation
Indices: 150635--150674 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
150625 AAATAATTAA
150635 AATAT AATAT AATAT -AT-T AATAT AAATAT AATAT AA-AT AA
1 AATAT AATAT AATAT AATAT AATAT -AATAT AATAT AATAT AA
150675 AAAATATTAA
Statistics
Matches: 32, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
3 1 0.03
4 8 0.25
5 18 0.56
6 5 0.16
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:150662 original size:19 final size:20
Alignment explanation
Indices: 150626--150669 Score: 65
Period size: 19 Copynumber: 2.3 Consensus size: 20
150616 TATCATAAAA
150626 AATA-ATTAAAATATAATAT
1 AATATATTAAAATATAATAT
*
150645 AATATATTAATATA-AATAT
1 AATATATTAAAATATAATAT
150664 AATATA
1 AATATA
150670 AATAAAAAAT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 15 0.65
20 8 0.35
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AATATATTAAAATATAATAT
Found at i:150680 original size:24 final size:25
Alignment explanation
Indices: 150620--150694 Score: 75
Period size: 24 Copynumber: 3.0 Consensus size: 25
150610 TTTAAATATC
150620 ATAAAAAATAATTAAAATATAATAT-A
1 ATAAAAAAT-ATT-AAATATAATATAA
**
150646 ATATATTAATA-TAAATATAATATAA
1 ATA-AAAAATATTAAATATAATATAA
*
150671 ATAAAAAATATTAAA-ATTATATAA
1 ATAAAAAATATTAAATATAATATAA
150695 CATTACCGCA
Statistics
Matches: 41, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
24 24 0.59
25 9 0.22
26 4 0.10
27 4 0.10
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (25 bp):
ATAAAAAATATTAAATATAATATAA
Found at i:153341 original size:2 final size:2
Alignment explanation
Indices: 153334--153367 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
153324 TCTAAACAAA
153334 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
153368 TCAATTTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:153512 original size:23 final size:24
Alignment explanation
Indices: 153461--153523 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 24
153451 AAATTTTATT
*
153461 TTATTATTTATAATAATATTAAATTA
1 TTATT-TTTAT-ATAATATTAAATAA
*
153487 TTATTTTTATATAATATT-TATAA
1 TTATTTTTATATAATATTAAATAA
* *
153510 TTAATTTTAAATAA
1 TTATTTTTATATAA
153524 AAATTATATT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 15 0.45
24 8 0.24
25 5 0.15
26 5 0.15
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTATTTTTATATAATATTAAATAA
Found at i:153516 original size:24 final size:24
Alignment explanation
Indices: 153462--153517 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 24
153452 AATTTTATTT
153462 TATTATTTATAATAATATTAAATTA
1 TATT-TTTATAATAATATTAAATTA
153487 TTATTTTTAT-ATAATATTTATAATTA
1 -TATTTTTATAATAATA-TTA-AATTA
153513 -ATTTT
1 TATTTT
153518 AAATAAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
24 11 0.39
25 8 0.29
26 9 0.32
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
TATTTTTATAATAATATTAAATTA
Found at i:153530 original size:23 final size:23
Alignment explanation
Indices: 153486--153531 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
153476 ATATTAAATT
* * * *
153486 ATTATTTTTATATAATATTTATA
1 ATTAATTTTAAATAAAAATTATA
153509 ATTAATTTTAAATAAAAATTATA
1 ATTAATTTTAAATAAAAATTATA
153532 TTTTTAAAAA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (23 bp):
ATTAATTTTAAATAAAAATTATA
Found at i:153685 original size:23 final size:23
Alignment explanation
Indices: 153659--153706 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
153649 GAAAAATAAC
153659 TTTTGAATTTTTTAATATTTGTT
1 TTTTGAATTTTTTAATATTTGTT
*
153682 TTTTGAGTTTTTTAATATTTGTT
1 TTTTGAATTTTTTAATATTTGTT
153705 TT
1 TT
153707 GTAAAAAATA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (23 bp):
TTTTGAATTTTTTAATATTTGTT
Found at i:158680 original size:30 final size:30
Alignment explanation
Indices: 158646--158737 Score: 82
Period size: 30 Copynumber: 3.0 Consensus size: 30
158636 TCAAATTGTT
158646 TTTTAATTTAAAAGTTAATATAT-AATTTAA
1 TTTTAATTTAAAA-TTAATATATAAATTTAA
* * *
158676 TTTT-ATGATATAATTAATATTTAAATTTAA
1 TTTTAAT-TTAAAATTAATATATAAATTTAA
* *
158706 TTTTAATTGTATATATTAATTTA-AAATTTAA
1 TTTTAATT-TA-AAATTAATATATAAATTTAA
158737 T
1 T
158738 GTTGTTGATG
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
29 10 0.20
30 19 0.39
31 13 0.27
32 7 0.14
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (30 bp):
TTTTAATTTAAAATTAATATATAAATTTAA
Found at i:158894 original size:15 final size:16
Alignment explanation
Indices: 158870--158902 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
158860 ATACTACTTA
158870 TTATTAATAATATTAT
1 TTATTAATAATATTAT
*
158886 TTATT-ATAATTTTAT
1 TTATTAATAATATTAT
158901 TT
1 TT
158903 TACTTACATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
TTATTAATAATATTAT
Found at i:158987 original size:24 final size:24
Alignment explanation
Indices: 158942--159005 Score: 78
Period size: 22 Copynumber: 2.8 Consensus size: 24
158932 TAATTTTGTA
* *
158942 ATAAAAAATATTATATTAATAT-T
1 ATAATAAATATTAAATTAATATAT
* *
158965 ATTA-AAATTTTAAATTAATATAT
1 ATAATAAATATTAAATTAATATAT
158988 ATAATAAATATTAAATTA
1 ATAATAAATATTAAATTA
159006 TAAATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
22 15 0.44
23 7 0.21
24 12 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (24 bp):
ATAATAAATATTAAATTAATATAT
Found at i:158999 original size:41 final size:39
Alignment explanation
Indices: 158954--159030 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
158944 AAAAAATATT
158954 ATATTAATATTATTAAA-ATTTTAA-ATTAATATATATAATAA
1 ATATTAA-ATTA-TAAATATTTTAATATTAA-AT-TATAATAA
*
158995 ATATTAAATTATAAATTTTTTAATATTAAATTATAA
1 ATATTAAATTATAAATATTTTAATATTAAATTATAA
159031 ATCAAATTAG
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
39 9 0.27
40 12 0.36
41 12 0.36
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (39 bp):
ATATTAAATTATAAATATTTTAATATTAAATTATAATAA
Found at i:159524 original size:24 final size:25
Alignment explanation
Indices: 159468--159519 Score: 68
Period size: 28 Copynumber: 2.0 Consensus size: 25
159458 AAAAACAAAT
*
159468 ATCAAAACCATTTTCTCTTCCTTCCC
1 ATCAAAACCATTTTCTCTTCCGT-CC
159494 AATCAAAACGCATTTTCTCTTCCGTC
1 -ATCAAAAC-CATTTTCTCTTCCGTC
159520 TCAAATCCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 9 0.39
28 14 0.61
ACGTcount: A:0.25, C:0.35, G:0.04, T:0.37
Consensus pattern (25 bp):
ATCAAAACCATTTTCTCTTCCGTCC
Found at i:160794 original size:23 final size:22
Alignment explanation
Indices: 160766--160845 Score: 101
Period size: 23 Copynumber: 3.6 Consensus size: 22
160756 TTTGGGGTGA
160766 ATAAATAAATTTTTAATTTTTTT
1 ATAAATAAATTTTTAA-TTTTTT
*
160789 ATAAATAAA-ATTT-ATTTTTT
1 ATAAATAAATTTTTAATTTTTT
*
160809 ATAAATAATTTTATTAATTTTTT
1 ATAAATAAATTT-TTAATTTTTT
*
160832 ATAAATTAATTTTT
1 ATAAATAAATTTTT
160846 TTTATAAATA
Statistics
Matches: 49, Mismatches: 5, Indels: 7
0.80 0.08 0.11
Matches are distributed among these distances:
20 14 0.29
21 2 0.04
22 7 0.14
23 26 0.53
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (22 bp):
ATAAATAAATTTTTAATTTTTT
Found at i:160808 original size:20 final size:20
Alignment explanation
Indices: 160783--160856 Score: 73
Period size: 23 Copynumber: 3.7 Consensus size: 20
160773 AATTTTTAAT
160783 TTTTTTATAAATAAAATTTA
1 TTTTTTATAAATAAAATTTA
* *
160803 TTTTTTATAAATAATTTTATTAA
1 TTTTTTATAAATAA---AATTTA
*
160826 TTTTTTATAAAT-TAA-TT-
1 TTTTTTATAAATAAAATTTA
160843 TTTTTTATAAATAA
1 TTTTTTATAAATAA
160857 TAGTGATAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
17 12 0.27
18 1 0.02
19 1 0.02
20 14 0.32
23 16 0.36
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTTATAAATAAAATTTA
Found at i:160813 original size:43 final size:40
Alignment explanation
Indices: 160766--160856 Score: 121
Period size: 43 Copynumber: 2.2 Consensus size: 40
160756 TTTGGGGTGA
160766 ATAAATAAATTT-TTAATTTTTTTATAAATAAAATTTATTTTTT
1 ATAAATAAATTTATTAA-TTTTTTATAAAT-AAA-TT-TTTTTT
* *
160809 ATAAATAATTTTATTAATTTTTTATAAATTAATTTTTTTT
1 ATAAATAAATTTATTAATTTTTTATAAATAAATTTTTTTT
160849 ATAAATAA
1 ATAAATAA
160857 TAGTGATAGG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
40 14 0.31
41 2 0.04
42 2 0.04
43 23 0.51
44 4 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (40 bp):
ATAAATAAATTTATTAATTTTTTATAAATAAATTTTTTTT
Found at i:160996 original size:19 final size:20
Alignment explanation
Indices: 160968--161009 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
160958 AATTAAGATG
160968 TATTTAATTATTATAT-ATT
1 TATTTAATTATTATATAATT
* *
160987 TATTTTATTATTTTATAATT
1 TATTTAATTATTATATAATT
161007 TAT
1 TAT
161010 ATTTCGATTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 14 0.70
20 6 0.30
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (20 bp):
TATTTAATTATTATATAATT
Found at i:161362 original size:3 final size:3
Alignment explanation
Indices: 161354--161402 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
161344 TATATTAGAT
161354 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
161402 T
1 T
161403 ATAATACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:164072 original size:18 final size:19
Alignment explanation
Indices: 164037--164072 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
164027 TAATTAAATA
*
164037 ATTTAATCTATTTTGTATT
1 ATTTAATCTATATTGTATT
164056 ATTTAAT-TATATTGTAT
1 ATTTAATCTATATTGTAT
164073 AAGTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.31, C:0.03, G:0.06, T:0.61
Consensus pattern (19 bp):
ATTTAATCTATATTGTATT
Found at i:165010 original size:18 final size:18
Alignment explanation
Indices: 164987--165029 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
164977 TATCAACCCT
*
164987 AAATGTATCCTCTACCAC
1 AAATGTATCCCCTACCAC
*
165005 AAATGTATCCCCTACCTC
1 AAATGTATCCCCTACCAC
165023 AAATGTA
1 AAATGTA
165030 ACATCCTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.35, C:0.30, G:0.07, T:0.28
Consensus pattern (18 bp):
AAATGTATCCCCTACCAC
Found at i:167182 original size:13 final size:13
Alignment explanation
Indices: 167166--167196 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
167156 ACAATTCATC
167166 ATGTATCAATACA
1 ATGTATCAATACA
*
167179 ATGTATCGATACA
1 ATGTATCAATACA
167192 ATGTA
1 ATGTA
167197 CCATGTATCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.32
Consensus pattern (13 bp):
ATGTATCAATACA
Found at i:167297 original size:13 final size:13
Alignment explanation
Indices: 167279--167303 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
167269 TACAAAGAAC
167279 ATGTATCGATACT
1 ATGTATCGATACT
167292 ATGTATCGATAC
1 ATGTATCGATAC
167304 AAAGCATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
ATGTATCGATACT
Found at i:169650 original size:22 final size:21
Alignment explanation
Indices: 169615--169664 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
169605 TTTGTTGATG
*
169615 ATTTTG-A-TGAAAAATGAAGT
1 ATTTTGAAGTGAAAAAT-AAGA
169635 ATTTTGAAGTGAAAAATAAGA
1 ATTTTGAAGTGAAAAATAAGA
*
169656 AATTTGAAG
1 ATTTTGAAG
169665 AAGATTTGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 6 0.23
21 12 0.46
22 8 0.31
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (21 bp):
ATTTTGAAGTGAAAAATAAGA
Found at i:169661 original size:21 final size:22
Alignment explanation
Indices: 169622--169664 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
169612 ATGATTTTGA
* *
169622 TGAAAAATGAAGTATTTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
169644 TGAAAAAT-AAGAAATTTGAAG
1 TGAAAAATGAAGAAATTTGAAG
169665 AAGATTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 11 0.58
22 8 0.42
ACGTcount: A:0.51, C:0.00, G:0.21, T:0.28
Consensus pattern (22 bp):
TGAAAAATGAAGAAATTTGAAG
Found at i:175998 original size:13 final size:13
Alignment explanation
Indices: 175979--176009 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
175969 ACAATTCATC
175979 ATGTATCGATACA
1 ATGTATCGATACA
*
175992 TTGTATCGATACA
1 ATGTATCGATACA
176005 ATGTA
1 ATGTA
176010 CCATGTATCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.35
Consensus pattern (13 bp):
ATGTATCGATACA
Found at i:176006 original size:33 final size:33
Alignment explanation
Indices: 175960--176024 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
175950 TTTGAAGCAA
*
175960 TGTATCGAAACAAT-TCATCATGTATCGATACAT
1 TGTATCGAAACAATGT-ACCATGTATCGATACAT
*
175993 TGTATCGATACAATGTACCATGTATCGATACA
1 TGTATCGAAACAATGTACCATGTATCGATACA
176025 AACAGTGGTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.32
Consensus pattern (33 bp):
TGTATCGAAACAATGTACCATGTATCGATACAT
Found at i:176098 original size:19 final size:20
Alignment explanation
Indices: 176054--176126 Score: 87
Period size: 20 Copynumber: 3.7 Consensus size: 20
176044 CTACCAGTTT
* *
176054 CATGTATCGATACAATTATC
1 CATGTATCGATACAATGATA
176074 CATGTATCGATACAATGA-A
1 CATGTATCGATACAATGATA
*
176093 CATGTATCGATACAAAGCATA
1 CATGTATCGATACAATG-ATA
*
176114 -ATGTATCAATACA
1 CATGTATCGATACA
176127 TCTGGGTATG
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
19 16 0.34
20 30 0.64
21 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (20 bp):
CATGTATCGATACAATGATA
Done.