Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold488
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2093548
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.33
File 6 of 14
Found at i:723281 original size:15 final size:16
Alignment explanation
Indices: 723175--723288 Score: 60
Period size: 16 Copynumber: 7.1 Consensus size: 16
723165 AAATATTATA
*
723175 AAATAT-AATATAAAA
1 AAATATAAATATAAAT
*
723190 ATAATA-AAATATAAAC
1 A-AATATAAATATAAAT
* * *
723206 ATAT-TAAAATTTATAT
1 AAATAT-AAATATAAAT
723222 AAA-ATAAAT-TAATAAT
1 AAATATAAATAT-A-AAT
* *
723238 AAATTAAAAATATAATT
1 AAA-TATAAATATAAAT
*
723255 ATAATATAAATATACAT
1 A-AATATAAATATAAAT
723272 AAATAT-AATATAAAT
1 AAATATAAATATAAAT
723287 AA
1 AA
723289 TATTCGTAAT
Statistics
Matches: 75, Mismatches: 13, Indels: 22
0.68 0.12 0.20
Matches are distributed among these distances:
14 1 0.01
15 18 0.24
16 33 0.44
17 14 0.19
18 8 0.11
19 1 0.01
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (16 bp):
AAATATAAATATAAAT
Found at i:724949 original size:54 final size:55
Alignment explanation
Indices: 724876--724981 Score: 135
Period size: 54 Copynumber: 1.9 Consensus size: 55
724866 TCTTTGAATA
* * * *
724876 AATTAATATTATAAATTAATTA-AATACTCATTTAATTAAAA-AAGTATAAAACCT
1 AATTAATATTACAAATTAATTAGAAGA-TAATTCAATTAAAAGAAGTATAAAACCT
* *
724930 AATTAATATTACGAGTTAATTAGAAGATAATTCAATTAAAAGAAGTATAAAA
1 AATTAATATTACAAATTAATTAGAAGATAATTCAATTAAAAGAAGTATAAAA
724982 ATATAAATAA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
54 31 0.70
55 13 0.30
ACGTcount: A:0.54, C:0.06, G:0.07, T:0.34
Consensus pattern (55 bp):
AATTAATATTACAAATTAATTAGAAGATAATTCAATTAAAAGAAGTATAAAACCT
Found at i:725671 original size:27 final size:26
Alignment explanation
Indices: 725620--725674 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 26
725610 TTACAAGGTG
725620 AAAAAATAATTTTTTAAATAATAAGTTA
1 AAAAAATAATTTTTT--ATAATAAGTTA
725648 AAAAAATAATTTATTT-TAAGTAAGTTA
1 AAAAAATAATTT-TTTATAA-TAAGTTA
725675 TTATTTTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
26 3 0.12
27 7 0.28
28 12 0.48
29 3 0.12
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (26 bp):
AAAAAATAATTTTTTATAATAAGTTA
Found at i:725683 original size:50 final size:49
Alignment explanation
Indices: 725648--725750 Score: 124
Period size: 47 Copynumber: 2.1 Consensus size: 49
725638 TAATAAGTTA
*
725648 AAAAAATAA-TTTATTTTAAGTAAGTTATTATTTTTTAAAATTAAAAGATAT
1 AAAAAATAAGTTT-TTTTAAAT-AGTTATT-TTTTTTAAAATTAAAAGATAT
*
725699 AAAAAGTAAGTTTTTTTAAATAGTTA--TTTTTTAAAATTAACAA-ATAT
1 AAAAAATAAGTTTTTTTAAATAGTTATTTTTTTTAAAATTAA-AAGATAT
725746 AAAAA
1 AAAAA
725751 TTTTTAATTT
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
47 23 0.48
48 2 0.04
50 5 0.10
51 15 0.31
52 3 0.06
ACGTcount: A:0.50, C:0.01, G:0.06, T:0.43
Consensus pattern (49 bp):
AAAAAATAAGTTTTTTTAAATAGTTATTTTTTTTAAAATTAAAAGATAT
Found at i:725772 original size:19 final size:18
Alignment explanation
Indices: 725749--725797 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
725739 CAAATATAAA
*
725749 AATTTTTAATTTTATTTT
1 AATTTTTAATTTTAATTT
*
725767 ATATTTATAATTTTAATTT
1 A-ATTTTTAATTTTAATTT
725786 AATTTTTTAATT
1 AA-TTTTTAATT
725798 AAATTAGTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
18 2 0.08
19 24 0.92
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (18 bp):
AATTTTTAATTTTAATTT
Found at i:726566 original size:17 final size:17
Alignment explanation
Indices: 726546--726588 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
726536 TTAAATTTAT
*
726546 AAAATAAATATATGTAA
1 AAAATAAATACATGTAA
* * *
726563 AAAATTATTACATTTAA
1 AAAATAAATACATGTAA
726580 AAAATAAAT
1 AAAATAAAT
726589 TGATCATGAA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (17 bp):
AAAATAAATACATGTAA
Found at i:727356 original size:22 final size:22
Alignment explanation
Indices: 727328--727406 Score: 76
Period size: 21 Copynumber: 3.6 Consensus size: 22
727318 AAAATAAATT
727328 TTAAATTTTAAATTAAAATTTA
1 TTAAATTTTAAATTAAAATTTA
*
727350 TTAAATTTT-AATAAAAATTATA
1 TTAAATTTTAAATTAAAATT-TA
*
727372 TT-AATTAATTAAATT-AAGTTTA
1 TTAAATT--TTAAATTAAAATTTA
727394 -TAAATTTATAAAT
1 TTAAATTT-TAAAT
727407 ATTTTAATTT
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
20 1 0.02
21 19 0.40
22 19 0.40
23 6 0.12
24 3 0.06
ACGTcount: A:0.51, C:0.00, G:0.01, T:0.48
Consensus pattern (22 bp):
TTAAATTTTAAATTAAAATTTA
Found at i:727377 original size:21 final size:22
Alignment explanation
Indices: 727328--727375 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
727318 AAAATAAATT
*
727328 TTAAATTTTAAATTAAAATTTA
1 TTAAATTTTAAATAAAAATTTA
727350 TTAAATTTT-AATAAAAATTATA
1 TTAAATTTTAAATAAAAATT-TA
727372 TTAA
1 TTAA
727376 TTAATTAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TTAAATTTTAAATAAAAATTTA
Found at i:727864 original size:19 final size:18
Alignment explanation
Indices: 727804--727930 Score: 61
Period size: 17 Copynumber: 6.9 Consensus size: 18
727794 AATTAATATT
727804 ATAAATATTT-TATA-AA
1 ATAAATATTTATATATAA
*
727820 ATATAATA-TTATATTTAAA
1 ATA-AATATTTATATAT-AA
727839 ATAAAATATTTATAATATAA
1 AT-AAATATTTAT-ATATAA
**
727859 ATAAATAAATATAT-TAA
1 ATAAATATTTATATATAA
*
727876 ATTTATATAAATTTATATTATAA
1 A--TA-A-ATATTTATA-TATAA
*
727899 AT--ATAATTATA-ATAA
1 ATAAATATTTATATATAA
* *
727914 ATAAAAATTTAAATATA
1 ATAAATATTTATATATA
727931 TAGACAATAT
Statistics
Matches: 83, Mismatches: 12, Indels: 30
0.66 0.10 0.24
Matches are distributed among these distances:
15 6 0.07
16 5 0.06
17 24 0.29
18 5 0.06
19 18 0.22
20 10 0.12
21 10 0.12
22 1 0.01
23 4 0.05
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
ATAAATATTTATATATAA
Found at i:727868 original size:23 final size:23
Alignment explanation
Indices: 727837--727916 Score: 65
Period size: 23 Copynumber: 3.4 Consensus size: 23
727827 ATTATATTTA
727837 AAATAAAATATTTATAATATAAAT
1 AAAT-AAATATTTATAATATAAAT
* *
727861 AAATAAATATATTA-AATTTATAT
1 AAATAAATAT-TTATAATATAAAT
** *
727884 AAATTTATA-TTATAAATATAATT
1 AAATAAATATTTAT-AATATAAAT
727907 ATAATAAATA
1 A-AATAAATA
727917 AAAATTTAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
21 3 0.07
23 27 0.63
24 13 0.30
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (23 bp):
AAATAAATATTTATAATATAAAT
Found at i:728324 original size:37 final size:39
Alignment explanation
Indices: 728283--728359 Score: 97
Period size: 37 Copynumber: 2.0 Consensus size: 39
728273 ATTAAAAAAC
*
728283 TTTTAAAAT-ATATTAAAATAATAA-TATT-TTAATTATA
1 TTTTAAAATAAAATTAAAA-AATAATTATTATTAATTATA
* *
728320 TTTTAAATTAAAATTAAAAAATAATTTTTATTAATTATA
1 TTTTAAAATAAAATTAAAAAATAATTATTATTAATTATA
728359 T
1 T
728360 GATTTGATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 13 0.38
38 11 0.32
39 10 0.29
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (39 bp):
TTTTAAAATAAAATTAAAAAATAATTATTATTAATTATA
Found at i:731345 original size:20 final size:20
Alignment explanation
Indices: 731308--731361 Score: 72
Period size: 20 Copynumber: 2.6 Consensus size: 20
731298 TTCTATAATT
731308 TGTATCGATACAATAAGTGAA
1 TGTATCGATAC-ATAAGTGAA
* * *
731329 TTTATTGATACATAAGTGTA
1 TGTATCGATACATAAGTGAA
731349 TGTATCGATACAT
1 TGTATCGATACAT
731362 GTCTAAAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
20 19 0.68
21 9 0.32
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (20 bp):
TGTATCGATACATAAGTGAA
Found at i:731484 original size:32 final size:32
Alignment explanation
Indices: 731443--731518 Score: 107
Period size: 32 Copynumber: 2.4 Consensus size: 32
731433 TTTTTCATTA
* *
731443 TATCGATACATTCTGGGTTTTTGACCCAAATG
1 TATCGATACATTCTAGGTTTGTGACCCAAATG
* *
731475 TATCAATACATTCTAGGTTTGTGACCTAAATG
1 TATCGATACATTCTAGGTTTGTGACCCAAATG
*
731507 TATTGATACATT
1 TATCGATACATT
731519 TTTCAATGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.29, C:0.16, G:0.16, T:0.39
Consensus pattern (32 bp):
TATCGATACATTCTAGGTTTGTGACCCAAATG
Found at i:731528 original size:20 final size:20
Alignment explanation
Indices: 731503--731557 Score: 101
Period size: 20 Copynumber: 2.8 Consensus size: 20
731493 TTGTGACCTA
731503 AATGTATTGATACATTTTTC
1 AATGTATTGATACATTTTTC
731523 AATGTATTGATACATTTTTC
1 AATGTATTGATACATTTTTC
*
731543 AATGTATCGATACAT
1 AATGTATTGATACAT
731558 GCAGACAATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.45
Consensus pattern (20 bp):
AATGTATTGATACATTTTTC
Found at i:742658 original size:256 final size:256
Alignment explanation
Indices: 742203--742714 Score: 997
Period size: 256 Copynumber: 2.0 Consensus size: 256
742193 CGATCATTTC
*
742203 GGGCTAGGCATGATCGGATGCCTATTGAAACCTATGTCTTGAGTTACGAAACTCAAAACATTGAT
1 GGGCTAGGCATGATCGGATGCCTATTGAAACCTATGTCTTGAGTTACGAAACTCAAAACATCGAT
742268 CCCGTGGTCTGCGTACTTTAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGCAAAGAGGT
66 CCCGTGGTCTGCGTACTTTAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGCAAAGAGGT
742333 ACGAACCTCCTCACGACGCCCGAAATCGGTACCTTACTAGCAACGTTTTGACTCGATATTGGTTG
131 ACGAACCTCCTCACGACGCCCGAAATCGGTACCTTACTAGCAACGTTTTGACTCGATATTGGTTG
*
742398 CATTGGTTTCGATTTATCATTATTTTGATATGATCCCCTTTGAATGTATGAATTGTGTTGA
196 CATTGGTTTCAATTTATCATTATTTTGATATGATCCCCTTTGAATGTATGAATTGTGTTGA
742459 GGGCTAGGCATGATCGGATGCCTATTGAAACCTATGTCTTGAGTTACGAAACTCAAAACATCGAT
1 GGGCTAGGCATGATCGGATGCCTATTGAAACCTATGTCTTGAGTTACGAAACTCAAAACATCGAT
742524 CCCGTGGTCTGCGTACTTTAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGCAAAGAGGT
66 CCCGTGGTCTGCGTACTTTAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGCAAAGAGGT
*
742589 ACGAACCTCCTCGCGACGCCCGAAATCGGTACCTTACTAGCAACGTTTTGACTCGATATTGGTTG
131 ACGAACCTCCTCACGACGCCCGAAATCGGTACCTTACTAGCAACGTTTTGACTCGATATTGGTTG
742654 CATTGGTTTCAATTTATCATTATTTTGATATGATCCCCTTTGAATGTATGAATTGTGTTGA
196 CATTGGTTTCAATTTATCATTATTTTGATATGATCCCCTTTGAATGTATGAATTGTGTTGA
742715 AAATAAATCC
Statistics
Matches: 253, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
256 253 1.00
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (256 bp):
GGGCTAGGCATGATCGGATGCCTATTGAAACCTATGTCTTGAGTTACGAAACTCAAAACATCGAT
CCCGTGGTCTGCGTACTTTAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGCAAAGAGGT
ACGAACCTCCTCACGACGCCCGAAATCGGTACCTTACTAGCAACGTTTTGACTCGATATTGGTTG
CATTGGTTTCAATTTATCATTATTTTGATATGATCCCCTTTGAATGTATGAATTGTGTTGA
Found at i:745388 original size:52 final size:51
Alignment explanation
Indices: 745310--745458 Score: 235
Period size: 52 Copynumber: 2.9 Consensus size: 51
745300 CGAAATATGA
745310 AAATTTGCCTGCATGTATCGATACATTGAATAGTGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACATTG-ATAGTGTATCGATACATCTGGGC
* *
745362 AAATTTGCCTGCATGTATCGATACATTTTATAATGTATCGATACATCTGGGC
1 AAATTTGCCTGCATGTATCGATACA-TTGATAGTGTATCGATACATCTGGGC
**
745414 AAATTTGCCTGCATGTATCGATACAAAGATCAGTGTATCGATACA
1 AAATTTGCCTGCATGTATCGATACATTGAT-AGTGTATCGATACA
745459 ATGTATCGAT
Statistics
Matches: 89, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
51 2 0.02
52 85 0.96
53 2 0.02
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (51 bp):
AAATTTGCCTGCATGTATCGATACATTGATAGTGTATCGATACATCTGGGC
Found at i:745465 original size:13 final size:13
Alignment explanation
Indices: 745447--745471 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
745437 CAAAGATCAG
745447 TGTATCGATACAA
1 TGTATCGATACAA
745460 TGTATCGATACA
1 TGTATCGATACA
745472 TTTAAGTGAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:745551 original size:13 final size:13
Alignment explanation
Indices: 745533--745557 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
745523 ACAAAAAATA
745533 TGTATCGATACAT
1 TGTATCGATACAT
745546 TGTATCGATACA
1 TGTATCGATACA
745558 ACACTTTATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:745553 original size:32 final size:33
Alignment explanation
Indices: 745512--745577 Score: 98
Period size: 32 Copynumber: 2.0 Consensus size: 33
745502 AGTAGCTTAA
745512 ATTGTATCGATACAA-AAAATATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
***
745544 ATTGTATCGATACAACACTTTATGTATCGATAC
1 ATTGTATCGATACAACAAAATATGTATCGATAC
745577 A
1 A
745578 AATCGTTGAA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
32 15 0.50
33 15 0.50
ACGTcount: A:0.39, C:0.15, G:0.12, T:0.33
Consensus pattern (33 bp):
ATTGTATCGATACAACAAAATATGTATCGATAC
Found at i:746520 original size:52 final size:52
Alignment explanation
Indices: 746388--746599 Score: 192
Period size: 52 Copynumber: 4.2 Consensus size: 52
746378 GAAAAGTGAT
* * * * * * * *
746388 AAAGATGCCAATATGTTGATTCACGGCCAACGATATTGGGCTTAAAGCTGAGAA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATG-G-A
* * *
746442 AAAGGATGTCAATGTGCTGATTCAAGGCCAGCTACATTGAACTTAAAGATGGA
1 AAAGG-TGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
*
746495 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTATATTGGAC-T-----T---
1 AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
* *
746538 AAAGGTGCCAATGTGCTGATTCAAGGTC-GACTACATTGGACTTAAAGATGGA
1 AAAGGTGCCAATATGCTGATTCAAGGCCAG-CTACATTGGACTTAAAGATGGA
746590 AAAGGTGCCA
1 AAAGGTGCCA
746600 CCGATTTGTG
Statistics
Matches: 129, Mismatches: 18, Indels: 24
0.75 0.11 0.14
Matches are distributed among these distances:
42 1 0.01
43 36 0.28
44 1 0.01
46 1 0.01
49 1 0.01
51 1 0.01
52 42 0.33
53 6 0.05
54 5 0.04
55 35 0.27
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.25
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCAGCTACATTGGACTTAAAGATGGA
Found at i:746556 original size:43 final size:43
Alignment explanation
Indices: 746495--746584 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
746485 TAAAGATGGA
*
746495 AAAGGTGCCAATATGCTGATTCAAGGCC-AGCTATATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCGA-CTACATTGGACTT
* *
746538 AAAGGTGCCAATGTGCTGATTCAAGGTCGACTACATTGGACTT
1 AAAGGTGCCAATATGCTGATTCAAGGCCGACTACATTGGACTT
746581 AAAG
1 AAAG
746585 ATGGAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
43 42 0.98
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
AAAGGTGCCAATATGCTGATTCAAGGCCGACTACATTGGACTT
Found at i:746731 original size:58 final size:58
Alignment explanation
Indices: 746652--747056 Score: 293
Period size: 58 Copynumber: 6.9 Consensus size: 58
746642 CTTTGAAGGT
*
746652 TGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGGCTTTTAAAAAATA
1 TGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGGCTTTTAAAAAAGA
* * * *
746710 TGCCACTGACTTGTGGGCTTTTGAACAGGGTGCCACTAACTTGTGGGCTTTT--AAAGGT
1 TGCCACTGACTTGTGGGCTTTT-AA-AGGTTGCCACTGACTTGTGGGCTTTTAAAAAAGA
** * * *
746768 TGCCACTGACTTGTGGGCTTTTGAAAAATATGCCACTGACTTGTGGGCTTTTGAAAAGGG
1 TGCCACTGACTTGTGGGCTTTT-AAAGGT-TGCCACTGACTTGTGGGCTTTTAAAAAAGA
* ** * * * **
746828 TGCCACTAACTTGTGGGC-TGAAAAGAG-TGCTA-TAGAGTTGTGAGCTTACAAAAGAAAAAGA
1 TGCCACTGACTTGTGGGCTTTTAAAG-GTTGCCACT-GACTTGTGGGCTT---TTA-AAAAAGA
* * * * * * * *** * *
746889 GTGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGG
1 -TGCCACTGACTTGTGGGCTTT-TAAAGGTTGCCACTGACTTGTGGGCTTTTAAAAAAGA
* * *
746949 TGCCACTGATTTGTGGGC-TTTGAAGGTTGCCACTGACTTGTGGGCTTTCGAAAAAA-A
1 TGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGGCTTT-TAAAAAAGA
* *** *
747006 TGCCACTGACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGGACTTTT
1 TGCCACTGACTTGTGGGCTTT-TAAAGGTTGCCACTGACTTGTGGGCTTTT
747057 GAAGGGTGAT
Statistics
Matches: 269, Mismatches: 59, Indels: 38
0.73 0.16 0.10
Matches are distributed among these distances:
56 1 0.00
57 55 0.20
58 83 0.31
59 40 0.15
60 51 0.19
61 5 0.02
62 14 0.05
63 2 0.01
64 18 0.07
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (58 bp):
TGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTGACTTGTGGGCTTTTAAAAAAGA
Found at i:746770 original size:88 final size:87
Alignment explanation
Indices: 746625--746846 Score: 367
Period size: 88 Copynumber: 2.6 Consensus size: 87
746615 CGGAAAAGGG
* * * *
746625 TGCCACTGATTTATGGGC-TTTG-AAGGTTGCCACTGACTTGTGGGCTTTTAAAGGTTGCCACTG
1 TGCCACTGACTTGTGGGCTTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACTG
746688 ACTTGTGGGCTTTTAAAAAATA
66 ACTTGTGGGCTTTTAAAAAATA
746710 TGCCACTGACTTGTGGGCTTTTGAACAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
1 TGCCACTGACTTGTGGGCTTTTGAA-AGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACT
*
746775 GACTTGTGGGCTTTTGAAAAATA
65 GACTTGTGGGCTTTTAAAAAATA
746798 TGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCACTAACTTGTGGGCT
1 TGCCACTGACTTGTGGGCTTTTG-AAAGGGTGCCACTAACTTGTGGGCT
746847 GAAAAGAGTG
Statistics
Matches: 128, Mismatches: 5, Indels: 5
0.93 0.04 0.04
Matches are distributed among these distances:
85 16 0.12
86 4 0.03
87 1 0.01
88 105 0.82
89 2 0.02
ACGTcount: A:0.21, C:0.18, G:0.27, T:0.33
Consensus pattern (87 bp):
TGCCACTGACTTGTGGGCTTTTGAAAGGGTGCCACTAACTTGTGGGCTTTTAAAGGTTGCCACTG
ACTTGTGGGCTTTTAAAAAATA
Found at i:746990 original size:121 final size:116
Alignment explanation
Indices: 746768--747050 Score: 309
Period size: 121 Copynumber: 2.4 Consensus size: 116
746758 TTTTAAAGGT
* **
746768 TGCCACTGACTTGTGGGCTTTTGAAAAATATGCCACTGACTTGTGGGCTTTTGAAAAGGGTGCCA
1 TGCCACTGACTTGTGGGC-TTTGAAAAAAATGCCACTGACTTGTGGGCTTCGGAAAAGGGTGCCA
* * *
746833 CTAACTTGTGGGCTGAAAAGAGTGCTATAGAGTTGTGAGCTTACAAAAGAAAAAGAG
65 CTAACTTGTGGGCTGAAAAGAGTGCCATAGACTTGTGAGCTTAC----GAAAAA-AA
* * * * * *
746890 TGCCACGGAGTTGTGGACTTTGGAAAAGATGCCACCGACTTGTGGGCTTCGGAAAAGGGTGCCAC
1 TGCCACTGACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGGGCTTCGGAAAAGGGTGCCAC
* * *** * *
746955 TGATTTGTGGGCTTTGAAG-GTTGCCACT-GACTTGTGGGCTTTCGAAAAAAA
66 TAACTTGTGGGCTGAAAAGAG-TGCCA-TAGACTTGTGAGCTTACGAAAAAAA
747006 TGCCACTGACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGG
1 TGCCACTGACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGG
747051 ACTTTTGAAG
Statistics
Matches: 135, Mismatches: 24, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
116 40 0.30
117 6 0.04
120 1 0.01
121 72 0.53
122 16 0.12
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.27
Consensus pattern (116 bp):
TGCCACTGACTTGTGGGCTTTGAAAAAAATGCCACTGACTTGTGGGCTTCGGAAAAGGGTGCCAC
TAACTTGTGGGCTGAAAAGAGTGCCATAGACTTGTGAGCTTACGAAAAAAA
Found at i:747058 original size:30 final size:30
Alignment explanation
Indices: 746588--747059 Score: 377
Period size: 30 Copynumber: 16.1 Consensus size: 30
746578 CTTAAAGATG
* * **
746588 GAAAAGG-TGCCACCGATTTGTGGGCTTCG
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* * *
746617 GAAAAGGGTGCCACTGATTTATGGGC-TTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
*
746646 G--AAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
*
746674 --AAAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* **
746702 AAAAAATATGCCACTGACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* * *
746732 GAACAGGGTGCCACTAACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
*
746762 --AAAGGTTGCCACTGACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
**
746790 GAAAAATATGCCACTGACTTGTGGGCTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* *
746820 GAAAAGGGTGCCACTAACTTGTGGGC---T
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* * * **
746847 GAAAA-GAGTGCTA-TAGAGTTGTGAGCTTACAAAA
1 GAAAAGGA-TGCCACT-GACTTGTGGGCTT----TT
* * * * *
746881 GAAAAAGAGTGCCACGGAGTTGTGGACTTTG
1 GAAAAGGA-TGCCACTGACTTGTGGGCTTTT
* **
746912 GAAAA-GATGCCACCGACTTGTGGGCTTCG
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* *
746941 GAAAAGGGTGCCACTGATTTGTGGGC-TTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
* *
746970 G--AAGGTTGCCACTGACTTGTGGGCTTTC
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
**
746998 GAAAAAAATGCCACTGACTTGTGGGC-TTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
** *
747027 GAAAAAAATGCCACTGACTTGTGGACTTTT
1 GAAAAGGATGCCACTGACTTGTGGGCTTTT
747057 GAA
1 GAA
747060 GGGTGATGAA
Statistics
Matches: 365, Mismatches: 55, Indels: 45
0.78 0.12 0.10
Matches are distributed among these distances:
26 2 0.01
27 59 0.16
28 58 0.16
29 61 0.17
30 157 0.43
31 5 0.01
34 5 0.01
35 18 0.05
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (30 bp):
GAAAAGGATGCCACTGACTTGTGGGCTTTT
Found at i:748501 original size:1 final size:1
Alignment explanation
Indices: 748497--748626 Score: 71
Period size: 1 Copynumber: 130.0 Consensus size: 1
748487 CCGGACCCCC
* * * * * ** *
748497 TTTTTTTTGTTTGTTTTTTTATTGTTTTTTGTTTTTTTTTTTTGCTTTTTTTTGTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
** ** ** ** ** ** *
748562 TGGTTTTTCATTTTTTCGTTTTTTTTTTTTGGTTTTTCATTTTTTTCGTTTTTTTTTTTTGTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
748627 GGAGGACGCC
Statistics
Matches: 96, Mismatches: 33, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 96 1.00
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.84
Consensus pattern (1 bp):
T
Found at i:748525 original size:23 final size:21
Alignment explanation
Indices: 748498--748626 Score: 111
Period size: 23 Copynumber: 5.9 Consensus size: 21
748488 CGGACCCCCT
748498 TTTTTTTGTTTGTTTTTTTATTG
1 TTTTTTTGTTT-TTTTTTT-TTG
748521 -TTTTTTGTTTTTTTTTTTTG
1 TTTTTTTGTTTTTTTTTTTTG
748541 CTTTTTTTTGTTTTTTTTTTTTG
1 --TTTTTTTGTTTTTTTTTTTTG
* **
748564 GTTTTTCATTTTTTCGTTTTTT-
1 TTTTTTTGTTTTTT--TTTTTTG
*
748586 TTTTTTGGTTTTTCATTTTTTTCG
1 TTTTTTTGTTTTT--TTTTTTT-G
*
748610 TTTTTTT-TTTTTGTTTT
1 TTTTTTTGTTTTTTTTTT
748627 GGAGGACGCC
Statistics
Matches: 89, Mismatches: 8, Indels: 20
0.76 0.07 0.17
Matches are distributed among these distances:
20 3 0.03
21 22 0.25
22 26 0.29
23 31 0.35
24 7 0.08
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.84
Consensus pattern (21 bp):
TTTTTTTGTTTTTTTTTTTTG
Found at i:748527 original size:22 final size:21
Alignment explanation
Indices: 748499--748559 Score: 90
Period size: 20 Copynumber: 3.0 Consensus size: 21
748489 GGACCCCCTT
748499 TTTTTTGTTTGTTTTTTTATTG
1 TTTTTTGTTTGTTTTTTT-TTG
748521 TTTTTTGTTT-TTTTTTTTTG
1 TTTTTTGTTTGTTTTTTTTTG
*
748541 CTTTTT-TTTGTTTTTTTTT
1 TTTTTTGTTTGTTTTTTTTT
748560 TTTGGTTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 3 0.08
20 17 0.46
21 7 0.19
22 10 0.27
ACGTcount: A:0.02, C:0.02, G:0.10, T:0.87
Consensus pattern (21 bp):
TTTTTTGTTTGTTTTTTTTTG
Found at i:748532 original size:30 final size:28
Alignment explanation
Indices: 748498--748626 Score: 129
Period size: 29 Copynumber: 4.4 Consensus size: 28
748488 CGGACCCCCT
748498 TTTTTTTGTTTGTT-TTTTTATTGTTTTTT
1 TTTTTTTGTTT-TTATTTTT-TTGTTTTTT
*
748527 GTTTTTTT-TTTTTGCTTTTTTTTGTTTTTT
1 -TTTTTTTGTTTTT--ATTTTTTTGTTTTTT
* *
748557 TTTTTTGGTTTTTCATTTTTTCGTTTTTT
1 TTTTTTTGTTTTT-ATTTTTTTGTTTTTT
*
748586 TTTTTTGGTTTTTCATTTTTTTCG-TTTTT
1 TTTTTTTGTTTTT-ATTTTTTT-GTTTTTT
748615 TTTTTTTGTTTT
1 TTTTTTTGTTTT
748627 GGAGGACGCC
Statistics
Matches: 89, Mismatches: 5, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
28 2 0.02
29 60 0.67
30 22 0.25
31 5 0.06
ACGTcount: A:0.02, C:0.04, G:0.10, T:0.84
Consensus pattern (28 bp):
TTTTTTTGTTTTTATTTTTTTGTTTTTT
Found at i:749317 original size:69 final size:69
Alignment explanation
Indices: 749231--749368 Score: 258
Period size: 69 Copynumber: 2.0 Consensus size: 69
749221 CACTTCCATC
749231 TGCTCTAAAGCTTCCCAATCAATTCCAATAGCCACATATCACTTCTTAAATATAAATAGGATTTG
1 TGCTCTAAAGCTTCCCAATCAATTCCAATAGCCACATATCACTTCTTAAATATAAATAGGATTTG
749296 TTAA
66 TTAA
* *
749300 TGCTCTAAAGCTTCCCAATCAATTCTAATAGCCATATATCACTTCTTAAATATAAATAGGATTTG
1 TGCTCTAAAGCTTCCCAATCAATTCCAATAGCCACATATCACTTCTTAAATATAAATAGGATTTG
749365 TTAA
66 TTAA
749369 AACTCCTAAG
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
69 67 1.00
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (69 bp):
TGCTCTAAAGCTTCCCAATCAATTCCAATAGCCACATATCACTTCTTAAATATAAATAGGATTTG
TTAA
Found at i:753108 original size:20 final size:20
Alignment explanation
Indices: 753083--753138 Score: 112
Period size: 20 Copynumber: 2.8 Consensus size: 20
753073 ATACACACAA
753083 TAAATGTATCGATACATGTC
1 TAAATGTATCGATACATGTC
753103 TAAATGTATCGATACATGTC
1 TAAATGTATCGATACATGTC
753123 TAAATGTATCGATACA
1 TAAATGTATCGATACA
753139 AAACTACCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (20 bp):
TAAATGTATCGATACATGTC
Found at i:753335 original size:51 final size:51
Alignment explanation
Indices: 753207--753343 Score: 179
Period size: 51 Copynumber: 2.7 Consensus size: 51
753197 ATTTACTGTT
* * *
753207 TGTATCGATACATTCTTCATTATATCAATACATTTTGGGTTTTAACCCAGA
1 TGTATCGATACATTCTTCATTATATCGATACATTCTGAGTTTTAACCCAGA
* *
753258 TGTATTGATACATTTTTCATTATATCGATACATTCTGAGTTTTAACCCA-A
1 TGTATCGATACATTCTTCATTATATCGATACATTCTGAGTTTTAACCCAGA
* *
753308 GTGTATCGATACATTCCTT-AATGTATCGATACATTC
1 -TGTATCGATACATT-CTTCATTATATCGATACATTC
753344 AGACATTTTT
Statistics
Matches: 75, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
50 1 0.01
51 72 0.96
52 2 0.03
ACGTcount: A:0.29, C:0.18, G:0.12, T:0.42
Consensus pattern (51 bp):
TGTATCGATACATTCTTCATTATATCGATACATTCTGAGTTTTAACCCAGA
Found at i:755942 original size:79 final size:80
Alignment explanation
Indices: 755679--756268 Score: 645
Period size: 79 Copynumber: 7.5 Consensus size: 80
755669 CCACTATTAA
* ** *
755679 GGATACTCCAACCTCGTTATTTTCGAGGGGATACTCCAACCTC--AATTATTTCTAAAATATCGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCGA
*
755742 -TTTTCTACCATCGA
66 TTTTTCTACCATCGG
* * * * *
755756 GCATACTCCAACCCTGTTATTTCCGAGGGGGTACTCCAACC-CTGGTTTTATTTCTAAGACA-CT
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTC-GGTTTTATTTCTAAAACATC-
*
755819 GATTTTTC-ACCAT-TG
64 GATTTTTCTACCATCGG
* * *
755834 GGATACTCCAACCCCATTATTTTCGAGGGGATACTCTAACCCCGGTTTTATTT-TAAAAACATCG
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCT-AAAACATCG
755898 -TTTTTCTACCATCGG
65 ATTTTTCTACCATCGG
* ** * *
755913 GGATATTCCAACCTTGTTATTTTCAAGGGGATACTCCAACCTCGGTTTTATTTTTAAAACATCGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCGA
755978 TTTTT-TACCATCGG
66 TTTTTCTACCATCGG
* * * * *
755992 TGTTACTCTAACTCCGTTA-TTTCTGAGGGGATACTTCAACCTCGGTTTTATTTCTAAAACA-CT
1 GGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATC-
756055 GATTTTTC-ACCATCGG
64 GATTTTTCTACCATCGG
* * * * *
756071 GGATACTCCAACCCCATTATTTTCAAGGGGATACTCCAACTTCGATTTTATTTCTAAAACACCGA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCGA
756136 TTTTT-TCACCATCGG
66 TTTTTCT-ACCATCGG
* * * * * * * *
756151 GGATACTCCAACTCCATTA-TTTCTGAGAGGATATTCTAACCTCGATTTTTTTTCTAAAACACCG
1 GGATACTCCAACCCCGTTATTTTC-GAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCG
* *
756215 ATTTTTC-ATCATTGG
65 ATTTTTCTACCATCGG
*
756230 GGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAA
1 GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAA
756269 ACTTGTTTTT
Statistics
Matches: 431, Mismatches: 60, Indels: 42
0.81 0.11 0.08
Matches are distributed among these distances:
76 1 0.00
77 43 0.10
78 62 0.14
79 240 0.56
80 85 0.20
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (80 bp):
GGATACTCCAACCCCGTTATTTTCGAGGGGATACTCCAACCTCGGTTTTATTTCTAAAACATCGA
TTTTTCTACCATCGG
Found at i:756070 original size:158 final size:159
Alignment explanation
Indices: 755679--756268 Score: 651
Period size: 159 Copynumber: 3.8 Consensus size: 159
755669 CCACTATTAA
* * ** *
755679 GGATACTCCAAC-CTCGTTATTTTCGAGGGGATAC-TCCAACCTC--AATTATTTCTAAAATA-T
1 GGATACTCCAACTC-CATTATTTTCGAGGGGATACTTCTAACCTCGGTTTTATTTCTAAAACACT
* * * * * *
755739 CGA-TTTTCTACCATCGAGCATACTCCAACCCTGTTATTTCCGAGGGGGTACTCCAACC-CTGGT
65 CGATTTTTCTACCATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCTC-GGT
* * *
755802 TTTATTTCTAAGACACTGATTTTTCACCATTG
129 TTTATTTCTAAAACAC-GATTTTTTACCATCG
* *
755834 GGATACTCCAACCCCATTATTTTCGAGGGGATAC-TCTAACCCCGGTTTTATTT-TAAAA-ACAT
1 GGATACTCCAACTCCATTATTTTCGAGGGGATACTTCTAACCTCGGTTTTATTTCTAAAACAC-T
* **
755896 CG-TTTTTCTACCATCGGGGATATTCCAACCTTGTTATTTTCAAGGGGATACTCCAACCTCGGTT
65 CGATTTTTCTACCATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCTCGGTT
*
755960 TTATTTTTAAAACATCGATTTTTTACCATCG
130 TTATTTCTAAAACA-CGATTTTTTACCATCG
* * *
755991 GTGTTACTCTAACTCCGTTA-TTTCTGAGGGGATACTTC-AACCTCGGTTTTATTTCTAAAACAC
1 G-GATACTCCAACTCCATTATTTTC-GAGGGGATACTTCTAACCTCGGTTTTATTTCTAAAACAC
* * *
756054 T-GATTTTTC-ACCATCGGGGATACTCCAACCCCATTATTTTCAAGGGGATACTCCAACTTCGAT
64 TCGATTTTTCTACCATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCTCGGT
756117 TTTATTTCTAAAACACCGATTTTTTCACCATCGG
129 TTTATTTCTAAAACA-CGATTTTTT-ACCATC-G
* * *
756151 GGATACTCCAACTCCATTA-TTTCTGAGAGGATA-TTCTAACCTCGATTTTTTTTCTAAAACAC-
1 GGATACTCCAACTCCATTATTTTC-GAGGGGATACTTCTAACCTCGGTTTTATTTCTAAAACACT
* * **
756213 CGATTTTTC-ATCATTGGGGATACTCCAACCCCGTTATTTTTGAGGGGATACTCCAA
65 CGATTTTTCTACCATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAA
756269 ACTTGTTTTT
Statistics
Matches: 377, Mismatches: 40, Indels: 32
0.84 0.09 0.07
Matches are distributed among these distances:
155 39 0.10
156 6 0.02
157 91 0.24
158 116 0.31
159 121 0.32
160 4 0.01
ACGTcount: A:0.25, C:0.24, G:0.15, T:0.36
Consensus pattern (159 bp):
GGATACTCCAACTCCATTATTTTCGAGGGGATACTTCTAACCTCGGTTTTATTTCTAAAACACTC
GATTTTTCTACCATCGGGGATACTCCAACCCCGTTATTTTCAAGGGGATACTCCAACCTCGGTTT
TATTTCTAAAACACGATTTTTTACCATCG
Found at i:761689 original size:128 final size:125
Alignment explanation
Indices: 761517--761770 Score: 377
Period size: 128 Copynumber: 2.0 Consensus size: 125
761507 AAGAAAGGCT
* *
761517 TTTTCGTGTTAACAAAATTGTCTCAAAATTTGTCAATTATGAGACTTGACCCTAAACTCTACGC-
1 TTTTCATGTTAACAAAATTATCTCAAAATTTGTCAATTATGAGACTTGACCCTAAACTCTAC-CT
* *
761581 AAACACTATGAAATTCCTAGTGATCATCTTTTACAAAAGATGTCCTATATTAAAATTCAAGGGA
65 AAACAC---GAAATTCCTAGTGATCATCTTTTACAAAAGAAGTCCTATATCAAAATTCAAGGGA
*
761645 TTTTCATGTTAACAAAATTATCTCAAAAATTT-TTAATTATGAGACTTGACCCTAAACTCTACCT
1 TTTTCATGTTAACAAAATTATCTC-AAAATTTGTCAATTATGAGACTTGACCCTAAACTCTACCT
* * *
761709 AGACACGAAATTCCTAGTGATTATCTTTTACAAAAGAAGTCCTATCTCAAAATTCAAGGGA
65 AAACACGAAATTCCTAGTGATCATCTTTTACAAAAGAAGTCCTATATCAAAATTCAAGGGA
761770 T
1 T
761771 ATCTACAGAG
Statistics
Matches: 116, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
125 52 0.45
127 1 0.01
128 56 0.48
129 7 0.06
ACGTcount: A:0.37, C:0.18, G:0.11, T:0.34
Consensus pattern (125 bp):
TTTTCATGTTAACAAAATTATCTCAAAATTTGTCAATTATGAGACTTGACCCTAAACTCTACCTA
AACACGAAATTCCTAGTGATCATCTTTTACAAAAGAAGTCCTATATCAAAATTCAAGGGA
Found at i:762502 original size:16 final size:17
Alignment explanation
Indices: 762471--762503 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
762461 AAAATAATAT
*
762471 TTTTACATCTTTTAAAA
1 TTTTACATCATTTAAAA
762488 TTTTA-ATCATTTAAAA
1 TTTTACATCATTTAAAA
762504 AATATAAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.52
Consensus pattern (17 bp):
TTTTACATCATTTAAAA
Found at i:762876 original size:12 final size:12
Alignment explanation
Indices: 762854--762891 Score: 53
Period size: 12 Copynumber: 3.2 Consensus size: 12
762844 AAAATAATAT
762854 TTTAATT-TAAA
1 TTTAATTATAAA
762865 TTTAATTATAAA
1 TTTAATTATAAA
762877 TATTAA-TATAAA
1 T-TTAATTATAAA
762889 TTT
1 TTT
762892 TTTTAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
11 9 0.36
12 12 0.48
13 4 0.16
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (12 bp):
TTTAATTATAAA
Found at i:763051 original size:19 final size:20
Alignment explanation
Indices: 762995--763082 Score: 65
Period size: 23 Copynumber: 4.2 Consensus size: 20
762985 CATAATATTT
762995 TATAAATTT-TTTAAATTAA-A
1 TATAAATTTATTT-AA-TAATA
* *
763015 TATAAA-TAATATTATTAATA
1 TATAAATTTAT-TTAATAATA
763035 TTATACAATTTATTTAATAATA
1 -TATA-AATTTATTTAATAATA
763057 TATAAATTTATATATTAATAATA
1 TATAAA-TT-TAT-TTAATAATA
763080 TAT
1 TAT
763083 TGAATATAAA
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
19 4 0.07
20 11 0.20
21 12 0.22
22 13 0.24
23 15 0.27
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAAATTTATTTAATAATA
Found at i:763061 original size:42 final size:41
Alignment explanation
Indices: 762994--763081 Score: 101
Period size: 42 Copynumber: 2.1 Consensus size: 41
762984 ACATAATATT
762994 TTATAAATTTTTTAAATTAAATATAAATA-ATATTATTAATA
1 TTATAAATTTTTTAAATTAAATATAAATATATA-TATTAATA
*
763035 TTATACAATTTATTT-AA-TAATATATAAATTTATATATTAATA
1 TTATA-AATTT-TTTAAATTAA-ATATAAATATATATATTAATA
*
763077 ATATA
1 TTATA
763082 TTGAATATAA
Statistics
Matches: 41, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
41 8 0.20
42 27 0.66
43 6 0.15
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (41 bp):
TTATAAATTTTTTAAATTAAATATAAATATATATATTAATA
Found at i:764559 original size:18 final size:18
Alignment explanation
Indices: 764538--764573 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
764528 ATTTAATTTT
*
764538 ATGTTTTTATTTGGGTAA
1 ATGTTGTTATTTGGGTAA
764556 ATGTTGTTATTTGGGTAA
1 ATGTTGTTATTTGGGTAA
764574 CTGGTTAGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (18 bp):
ATGTTGTTATTTGGGTAA
Found at i:767999 original size:15 final size:13
Alignment explanation
Indices: 767967--767992 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
767957 CATGGTAGTT
767967 TTGTATCGATACA
1 TTGTATCGATACA
767980 TTGTATCGATACA
1 TTGTATCGATACA
767993 AATTGTAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:768694 original size:43 final size:43
Alignment explanation
Indices: 768611--769169 Score: 280
Period size: 43 Copynumber: 12.1 Consensus size: 43
768601 TTAAAGATGA
* * * * * *
768611 TAAAGATGCAAATATGCTAATTCAAGGCCAGCGATATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * *
768654 TAAAGGTGCCAATGTGTTGATTTAAGGTCAGCAACATTGGACTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * ** * *
768698 AAAGATGACAAAGGTGCCAATATGCTGATTCAAAGTTAGCGATATTGGACT
1 -----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * *
768749 TAAAGATGCCAATGTGCTGATTTAAGGCCAGCAACATTGGGCTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * * * *
768793 AAAGATAACAAAGGTGCCAATATGATGATTCAAAGCCAGCAATATTGGCCT
1 -----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* *
768844 T----GTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGTCT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * *
768883 TAAAGATGAAGGTGCCAACGTGTTGATTCAATGCCAGCAACATTGGACT
1 T----A--AAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * *
768932 TAAAGATGCCAATGAGCTGATTCAAGGCCAGCGACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * * * * *
768975 TAAAGATAACAAAGGCGTCAATATGTTGATTCAAGGCTAGCGATATTGGACT
1 TAAAGGT-------GC--CAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* ** *
769027 TAAAGGTACCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGAC-T
* * * *
769071 AAAGATGGAAAAGGTGCCAATATGCTGATTGAAGGCCAGCGATATTGGACT
1 -----T---AAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
* * *
769122 TAAAGGTGCCAATGTGCTAATTCAAGGCTAGCGACATTGGACT
1 TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
769165 TAAAG
1 TAAAG
769170 ATGAAAAAGG
Statistics
Matches: 397, Mismatches: 73, Indels: 92
0.71 0.13 0.16
Matches are distributed among these distances:
39 33 0.08
43 176 0.44
44 3 0.01
45 2 0.01
46 3 0.01
49 37 0.09
50 2 0.01
51 3 0.01
52 138 0.35
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.26
Consensus pattern (43 bp):
TAAAGGTGCCAATGTGCTGATTCAAGGCCAGCAACATTGGACT
Found at i:768745 original size:52 final size:52
Alignment explanation
Indices: 768655--768840 Score: 165
Period size: 52 Copynumber: 3.8 Consensus size: 52
768645 TATTGGACTT
* * * *
768655 AAAGGTGCCAATGTGTTGATTTAAGGTCAGCAACATTGGACTTAAAGATGAC
1 AAAGGTGCCAATATGCTGATTCAAAGTCAGCAACATTGGACTTAAAGATGAC
* * *
768707 AAAGGTGCCAATATGCTGATTCAAAGTTAGCGATATTGGACTT-AA-A-G--
1 AAAGGTGCCAATATGCTGATTCAAAGTCAGCAACATTGGACTTAAAGATGAC
* * * * * *
768754 --A--TGCCAATGTGCTGATTTAAGGCCAGCAACATTGGGCTTAAAGATAAC
1 AAAGGTGCCAATATGCTGATTCAAAGTCAGCAACATTGGACTTAAAGATGAC
* * *
768802 AAAGGTGCCAATATGATGATTCAAAGCCAGCAATATTGG
1 AAAGGTGCCAATATGCTGATTCAAAGTCAGCAACATTGG
768841 CCTTGTGCCA
Statistics
Matches: 104, Mismatches: 21, Indels: 18
0.73 0.15 0.13
Matches are distributed among these distances:
43 30 0.29
44 2 0.02
45 2 0.02
49 1 0.01
50 2 0.02
51 2 0.02
52 65 0.62
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.26
Consensus pattern (52 bp):
AAAGGTGCCAATATGCTGATTCAAAGTCAGCAACATTGGACTTAAAGATGAC
Found at i:768761 original size:95 final size:95
Alignment explanation
Indices: 768598--769225 Score: 768
Period size: 95 Copynumber: 6.7 Consensus size: 95
768588 TACAATACTA
* * * * *
768598 GACTTAAAGATGATAAAGATGCAAATATGCTAATTCAAGGCCAGCGATATTGGACTTAAAGGTGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* * *
768663 CAATGTGTTGATTTAAGGTCAGCAACATTG
66 CAATGTGCTGATTCAAGGCCAGCAACATTG
* **
768693 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAAGTTAGCGATATTGGACTTAAAGATGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
*
768758 CAATGTGCTGATTTAAGGCCAGCAACATTG
66 CAATGTGCTGATTCAAGGCCAGCAACATTG
* * * * * *
768788 GGCTTAAAGATAACAAAGGTGCCAATATGATGATTCAAAGCCAGCAATATTGGCCTT---G-TGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
*
768849 CAATGTGCTGATTCAAGGCTAGCAACATTG
66 CAATGTGCTGATTCAAGGCCAGCAACATTG
* ** * * * *
768879 GTCTTAAAGATG---AAGGTGCCAACGTGTTGATTCAATGCCAGCAACATTGGACTTAAAGATGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
* *
768941 CAATGAGCTGATTCAAGGCCAGCGACATTG
66 CAATGTGCTGATTCAAGGCCAGCAACATTG
* * * * * * *
768971 GACTTAAAGATAACAAAGGCGTCAATATGTTGATTCAAGGCTAGCGATATTGGACTTAAAGGTAC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
**
769036 CAATGTGCTGATTCAAGGCCAGTGACATTG
66 CAATGTGCTGATTCAAGGCCAGCAACATTG
* * *
769066 GGCTTAAAGATGGA-AAAGGTGCCAATATGCTGATTGAAGGCCAGCGATATTGGACTTAAAGGTG
1 GACTTAAAGAT-GACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATG
* * *
769130 CCAATGTGCTAATTCAAGGCTAGCGACATTG
65 CCAATGTGCTGATTCAAGGCCAGCAACATTG
* * * *
769161 GACTTAAAGATGAAAAAGGTACCAATATGCTGATTCAAGGCTAACGATATTGGACTTAAAGATGC
1 GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
769226 TAAAAGTGCC
Statistics
Matches: 463, Mismatches: 61, Indels: 18
0.85 0.11 0.03
Matches are distributed among these distances:
88 36 0.08
91 42 0.09
92 41 0.09
94 2 0.00
95 341 0.74
96 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.25
Consensus pattern (95 bp):
GACTTAAAGATGACAAAGGTGCCAATATGCTGATTCAAGGCCAGCGATATTGGACTTAAAGATGC
CAATGTGCTGATTCAAGGCCAGCAACATTG
Found at i:768922 original size:49 final size:49
Alignment explanation
Indices: 768845--769224 Score: 211
Period size: 52 Copynumber: 7.9 Consensus size: 49
768835 TATTGGCCTT
* * *
768845 GTGCCAATGTGCTGATTCAAGGCTAGCAACATTGGTCTTAAAGATGAAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAG
* *
768894 GTGCCAACGTGTTGATTCAATGCCAGCAACATTGGACTT-AA-A-G-A-
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAG
* * * *
768938 -TGCCAATGAGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAACAAAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGAT---GAAG
* * ** * * * *
768989 GCGTCAATATGTTGATTCAAGGCTAGCGATATTGGACTT----A--AAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAG
* * ** *
769032 GTACCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTTAAAGATGGAAAAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGAT-G--AAG
** * * *
769084 GTGCCAATATGCTGATTGAAGGCCAGCGATATTGGACTT----A--AAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAG
* * * *
769127 GTGCCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGAAAAAG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATG---AAG
* ** * * * *
769179 GTACCAATATGCTGATTCAAGGCTAACGATATTGGACTTAAAGATG
1 GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATG
769225 CTAAAAGTGC
Statistics
Matches: 261, Mismatches: 43, Indels: 51
0.74 0.12 0.14
Matches are distributed among these distances:
43 103 0.39
44 2 0.01
45 2 0.01
46 1 0.00
47 3 0.01
48 4 0.02
49 34 0.13
50 1 0.00
52 111 0.43
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (49 bp):
GTGCCAACGTGCTGATTCAAGGCCAGCAACATTGGACTTAAAGATGAAG
Found at i:769027 original size:52 final size:48
Alignment explanation
Indices: 768939--769253 Score: 247
Period size: 52 Copynumber: 6.4 Consensus size: 48
768929 ACTTAAAGAT
768939 GCCAATGA-GCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAACAAAG
1 GCCAAT-ATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT-A-AAAG
* * * *
768989 GCGTCAATATGTTGATTCAAGGCTAGCGATATTGGACTTAAAGGT---A-
1 GC--CAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAAG
* * *
769035 -CCAATGTGCTGATTCAAGGCCAGTGACATTGGGCTTAAAGATGGAAAAGG
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT--AAAA-G
* * *
769085 TGCCAATATGCTGATTGAAGGCCAGCGATATTGGACTTAAAGGT-----
1 -GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAAG
* * *
769129 GCCAATGTGCTAATTCAAGGCTAGCGACATTGGACTTAAAGATGAAAAAG
1 GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGAT--AAAAG
* * *
769179 GTACCAATATGCTGATTCAAGGCTAACGATATTGGACTTAAAGATGCTAAAAG
1 G--CCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGA---TAAAAG
*
769232 TGCCAATATGCTGATTTAAGGC
1 -GCCAATATGCTGATTCAAGGC
769254 TAGCAATAAT
Statistics
Matches: 212, Mismatches: 28, Indels: 48
0.74 0.10 0.17
Matches are distributed among these distances:
43 71 0.33
45 1 0.00
47 1 0.00
48 1 0.00
50 3 0.01
51 1 0.00
52 127 0.60
53 5 0.02
54 1 0.00
55 1 0.00
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (48 bp):
GCCAATATGCTGATTCAAGGCCAGCGACATTGGACTTAAAGATAAAAG
Found at i:769383 original size:35 final size:33
Alignment explanation
Indices: 769335--769427 Score: 98
Period size: 32 Copynumber: 2.8 Consensus size: 33
769325 ACTTAAAAGG
* * *
769335 AAAAGATGCCACGGAGTTGTGGACTTTTGGAGGAA
1 AAAAGGTGTCACGGAGTTGTGGACTTTT-GA-AAA
*
769370 AAAAGGTGTCACGGAGTTGTGGGC-TTTGAAAA
1 AAAAGGTGTCACGGAGTTGTGGACTTTTGAAAA
* * *
769402 AAAAGGTGTCATGAAGTAGTGGACTT
1 AAAAGGTGTCACGGAGTTGTGGACTT
769428 AAAAGAAAAA
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
32 22 0.45
33 3 0.06
34 3 0.06
35 21 0.43
ACGTcount: A:0.32, C:0.10, G:0.33, T:0.25
Consensus pattern (33 bp):
AAAAGGTGTCACGGAGTTGTGGACTTTTGAAAA
Found at i:769459 original size:99 final size:99
Alignment explanation
Indices: 769309--769963 Score: 318
Period size: 99 Copynumber: 6.6 Consensus size: 99
769299 TAGAAGAGGA
* * * * ***
769309 TGCCACGAAGTTGTGGACTTAAAAGGAAAAGATGCCACGGAGTTGTGGACTTTTGGAGGAAAAAA
1 TGCCACGAAGTTGTGGACTTAAAAGAAAAAAATGCCACGAAGTTATGGAC-TTAAAAGGAAAAAA
* * *
769374 GGTGTCACGGAGTTGTGGGCTTTG-AAA-AAAAAGG
65 -ATGTCACGGAGTTCTAGGCTTTGAAAAGAAAAAGG
* * * *
769408 TGTCATGAAGTAGTGGACTTAAAAGAAAAAAATGCCATGAAGTTATGGACTTAAAAGGAAAAAAA
1 TGCCACGAAGTTGTGGACTTAAAAGAAAAAAATGCCACGAAGTTATGGACTTAAAAGGAAAAAAA
*
769473 TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAATG
66 TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAAGG
* ** * * * ** * * **
769507 TGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACAAAATTGTAAACATAAAAAGAAAAAGG
1 TGCCACGAAGTTGTGGACTTAAAAGAAAAAAATGCCACGAAGTTATGGACTTAAAAGGAAAAAAA
* ** * * * *
769572 TGCCATAGAGCTGTGGGCTTTGAAAAGAAAAATG
66 TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAAGG
** * * *
769606 TGCCATAAAGTTGTGGGCTTTGAAAAGAAAAAAGATGCCACGGAGTTGTGGACTTAAAAGG-AAA
1 TGCCACGAAGTTGTGGAC-TT-AAAAGAAAAAA-ATGCCACGAAGTTATGGACTTAAAAGGAAAA
* * * * * * *
769670 AGATGCCACAGAATTGT-GGAC-TT-AAAATAAAAAAAG
63 AAATGTCACGGAGTTCTAGG-CTTTGAAAA-GAAAAAGG
** ** * * *
769706 TGCCAC-AGAGTTGTGGGTTTTGAAAAGAAAAAGGTGCTACGAAGTTGTGGGCTTTGAAAA-GAA
1 TGCCACGA-AGTTGT-GGACTT-AAAAGAAAAAAATGCCACGAAGTTATGGAC-TT-AAAAGGAA
* ** * *
769769 GAAGGTGCCACGGAGTTGT-GGAC-TTG-AAAG-----GG
61 AAAAATGTCACGGAGTTCTAGG-CTTTGAAAAGAAAAAGG
* * * ** * * * * **
769801 TGCCATGGAGTTGTGGACTTAAAAGGAAAGGATGCTACGAAATTGTGGACTTAAAAAGAAAAATG
1 TGCCACGAAGTTGTGGACTTAAAAGAAAAAAATGCCACGAAGTTATGGACTTAAAAGGAAAAAAA
* * * *
769866 TGTCATGGAGTTATGGGCTTTGAAAAGAAAAAGT
66 TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAAGG
* * * ** * * * *
769900 TGCCAC-AGAGTTTTAGACTTAAAAGGAACAAGGTGCCACTAAGTTATGGAATGAAAAAGAAAAA
1 TGCCACGA-AGTTGTGGACTTAAAA-GAAAAAAATGCCACGAAGTTATGGACTTAAAAGGAAAAA
769964 GGTGCCACGA
Statistics
Matches: 432, Mismatches: 99, Indels: 49
0.74 0.17 0.08
Matches are distributed among these distances:
91 4 0.01
92 20 0.05
93 30 0.07
94 8 0.02
95 12 0.03
97 20 0.05
98 14 0.03
99 179 0.41
100 68 0.16
101 58 0.13
102 19 0.04
ACGTcount: A:0.40, C:0.11, G:0.28, T:0.22
Consensus pattern (99 bp):
TGCCACGAAGTTGTGGACTTAAAAGAAAAAAATGCCACGAAGTTATGGACTTAAAAGGAAAAAAA
TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAAGG
Found at i:769474 original size:33 final size:32
Alignment explanation
Indices: 769411--769710 Score: 115
Period size: 32 Copynumber: 9.1 Consensus size: 32
769401 AAAAAGGTGT
769411 CATGAAGTAGTGGACTTAAAAGAAAAAAATGC
1 CATGAAGTAGTGGACTTAAAAGAAAAAAATGC
*
769443 CATGAAGTTA-TGGACTTAAAAGGAAAAAAATGT
1 CATGAAG-TAGTGGACTTAAAA-GAAAAAAATGC
* * ** **
769476 CACGGAGTTCTAGG-CTTTGAAAAGAAAAATGTGC
1 CATGAAGTAGT-GGAC-TT-AAAAGAAAAAAATGC
* * * **
769510 CACGGAGTTGTGGACTTAAAAGAAAAAGGTGC
1 CATGAAGTAGTGGACTTAAAAGAAAAAAATGC
** * * ** * **
769542 CACAAAATTGTAAACATAAAAAGAAAAAGGTGC
1 CATGAAGTAGTGGAC-TTAAAAGAAAAAAATGC
* **
769575 CAT-AGAGCT-GTGGGCTTTGAAAAGAAAAATGTGC
1 CATGA-AG-TAGTGGAC-TT-AAAAGAAAAAAATGC
* * *
769609 CATAAAGTTGTGGGCTTTGAAAAGAAAAAAGATGC
1 CATGAAGTAGTGGAC-TT-AAAAGAAAAAA-ATGC
* * * * *
769644 CACGGAGTTGTGGACTTAAAAGGAAAAGATGC
1 CATGAAGTAGTGGACTTAAAAGAAAAAAATGC
* * *
769676 CACAGAA-TTGTGGACTTAAAATAAAAAAAGTGC
1 CA-TGAAGTAGTGGACTTAAAAGAAAAAAA-TGC
769709 CA
1 CA
769711 CAGAGTTGTG
Statistics
Matches: 216, Mismatches: 36, Indels: 31
0.76 0.13 0.11
Matches are distributed among these distances:
32 69 0.32
33 63 0.29
34 65 0.30
35 19 0.09
ACGTcount: A:0.44, C:0.11, G:0.24, T:0.21
Consensus pattern (32 bp):
CATGAAGTAGTGGACTTAAAAGAAAAAAATGC
Found at i:769603 original size:34 final size:34
Alignment explanation
Indices: 769309--770242 Score: 338
Period size: 34 Copynumber: 28.4 Consensus size: 34
769299 TAGAAGAGGA
* * *
769309 TGCCAC-GAAGTTGTGGAC-TT-AAAAGGAAAAGA
1 TGCCACAG-AGTTGTGGGCTTTGAAAAGAAAAAGG
* * * *
769341 TGCCACGGAGTTGTGGACTTTTG-GAGGAAAAAAGG
1 TGCCACAGAGTTGTGGGC-TTTGAAAAG-AAAAAGG
* *
769376 TGTCACGGAGTTGTGGGCTTTG-AAA-AAAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * * * **
769408 TGTCA-TGAAGTAGTGGAC-TT-AAAAGAAAAAAA
1 TGCCACAG-AGTTGTGGGCTTTGAAAAGAAAAAGG
* * * **
769440 TGCCA-TGAAGTTATGGAC-TT-AAAAGGAAAAAAA
1 TGCCACAG-AGTTGTGGGCTTTGAAAA-GAAAAAGG
* * * * *
769473 TGTCACGGAGTTCTAGGCTTTGAAAAGAAAAATG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* *
769507 TGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * *** * *
769539 TGCCACAAAATTGTAAAC-ATAAAAAGAAAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * *
769572 TGCCATAGAGCTGTGGGCTTTGAAAAGAAAAATG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * *
769606 TGCCATAAAGTTGTGGGCTTTGAAAAGAAAAAAGA
1 TGCCACAGAGTTGTGGGCTTTGAAAAG-AAAAAGG
* * * *
769641 TGCCACGGAGTTGTGGAC-TT-AAAAGGAAAAGA
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * * *
769673 TGCCACAGAATTGTGGAC-TT-AAAATAAAAAAAG
1 TGCCACAGAGTTGTGGGCTTTGAAAA-GAAAAAGG
*
769706 TGCCACAGAGTTGTGGGTTTTGAAAAGAAAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* *
769740 TGCTAC-GAAGTTGTGGGCTTTGAAAAGAAGAAGG
1 TGCCACAG-AGTTGTGGGCTTTGAAAAGAAAAAGG
* *
769774 TGCCACGGAGTTGTGGAC-TTG-AAAG-----GG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
** * *
769801 TGCCATGGAGTTGTGGAC-TT-AAAAG-GAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * * * *
769832 ATGCTAC-GAAATTGTGGAC-TTAAAAAGAAAAATG
1 -TGCCACAG-AGTTGTGGGCTTTGAAAAGAAAAAGG
* ** * *
769866 TGTCATGGAGTTATGGGCTTTGAAAAGAAAAAGT
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * * *
769900 TGCCACAGAGTTTTAGAC-TT-AAAAGGAACAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAA-GAAAAAGG
* **
769933 TGCCACTA-AGTTAT-GG-AATGAAAAAGAAAAAGG
1 TGCCAC-AGAGTTGTGGGCTTTG-AAAAGAAAAAGG
*
769966 TGCCAC-GAAGTTGTGGAC-TT-AAAAG-----GG
1 TGCCACAG-AGTTGTGGGCTTTGAAAAGAAAAAGG
* * *
769993 TGCCACAGGAGTTGTAGACTTTTG--AAGGAAAAGAG
1 TGCCACA-GAGTTGTGGGC-TTTGAAAAGAAAAAG-G
* ** * * *
770028 TGCGATGGAGTTGTGGGCTTTGGAAATAAAAGGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * * *
770062 TACCAC-GAAGTTATGGAC-TT-AAAAGGAACAAGG
1 TGCCACAG-AGTTGTGGGCTTTGAAAA-GAAAAAGG
* * * * *
770095 TACCATC-GAGTTGTGGAC-ATAAAAAG-AAAAGA
1 TGCCA-CAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* * ** * *
770127 TGTCACGGAGTTGTGAACTTT-AAAAAAAAAAAG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
** * *
770160 TGCCATGGAGTTGTGGACTTTAAAAAGAAAAAGG
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
* **
770194 TGCCACGGAGTTGTGGGCTTTGAAAAGAAAAATA
1 TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
*
770228 TGCCACGGAGTTGTG
1 TGCCACAGAGTTGTG
770243 CACTTAAAAA
Statistics
Matches: 703, Mismatches: 138, Indels: 120
0.73 0.14 0.12
Matches are distributed among these distances:
27 33 0.05
28 9 0.01
29 4 0.01
30 2 0.00
31 10 0.01
32 169 0.24
33 176 0.25
34 240 0.34
35 60 0.09
ACGTcount: A:0.38, C:0.11, G:0.28, T:0.22
Consensus pattern (34 bp):
TGCCACAGAGTTGTGGGCTTTGAAAAGAAAAAGG
Found at i:769665 original size:67 final size:67
Alignment explanation
Indices: 769307--770286 Score: 557
Period size: 67 Copynumber: 14.9 Consensus size: 67
769297 TTTAGAAGAG
* * * * *
769307 GATGCCACGAAGTTGTGGACTTAAAAGGAAAAGATGCCACGGAGTTGTGGACTTTTG-GAGGAAA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGAC-TTTGAAAAGAAA
769371 AAA
65 AAA
* * * * * * * *
769374 GGTGTCACGGAGTTGTGGGCTTTGAAA-AAAAAGGTGTCATGAAGTAGTGGAC-TT-AAAAGAAA
1 GATGCCACGGAGTTGTGGAC-TTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAA
769436 AAA
65 AAA
* * * ** * *
769439 -ATGCCATGAAGTTATGGACTTAAAAGGAAAAAAATGTCACGGAGTTCTAGG-CTTTGAAAAGAA
1 GATGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGGAGTTGT-GGACTTTGAAAAGAA
*
769502 AAAT
64 AAAA
** * ** * *
769506 G-TGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACAAAATTGTAAAC-ATAAAAAG-AAA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAAA
769568 AA
66 AA
* ** * * * *** *
769570 GGTGCCATAGAGCTGTGGGCTTTGAAAAGAAAAATGTGCCATAAAGTTGTGGGCTTTGAAAAGAA
1 GATGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
769635 AAAA
64 AAAA
* * * * *
769639 GATGCCACGGAGTTGTGGACTTAAAAGGAAAAGATGCCACAGAATTGTGGAC-TT-AAAATAAAA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAAA
769702 AA
66 AA
* ** * * *
769704 -AGTGCCACAGAGTTGTGGGTTTTGAAAAGAAAAAGGTGCTACGAAGTTGTGGGCTTTGAAAAG-
1 GA-TGCCACGGAGTTGT-GGACTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGA
*
769767 AAGAA
63 AAAAA
* * * *
769772 GGTGCCACGGAGTTGTGGACTT----G-AAAGGGTGCCATGGAGTTGTGGAC-TT-AAAAG-GAA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAAA
*
769829 AG
66 AA
* * * * * * * *
769831 GATGCTACGAAATTGTGGACTTAAAAAGAAAAATGTGTCATGGAGTTATGGGCTTTGAAAAG-AA
1 GATGCCACGGAGTTGTGGACTT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAA
769895 AAA
65 AAA
* * * * * ** * *
769898 GTTGCCACAGAGTTTTAGACTTAAAAGGAACAAGGTGCCACTAAGTTATGGA--ATGAAAA-AGA
1 GATGCCACGGAGTTGTGGACTTAAAA-GAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGA-A
769960 AAAA
64 AAAA
* * * *
769964 GGTGCCACGAAGTTGTGGACTTAAAAG-----GGTGCCACAGGAGTTGTAGACTTTTG-AAGGAA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCAC-GGAGTTGTGGAC-TTTGAAAAGAA
*
770023 AAGA
64 AAAA
* * * * * * * * * *
770027 G-TGCGATGGAGTTGTGGGCTTTGGAAATAAAAGGGTACCACGAAGTTATGGAC-TT-AAAAGGA
1 GATGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
*
770089 ACAA
64 AAAA
* * * * * * *
770093 GGTACCATC-GAGTTGTGGACATAAAA-AGAAAAGATGTCACGGAGTTGTGAACTTT-AAAAAAA
1 GATGCCA-CGGAGTTGTGGACTTAAAAGA-AAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
770155 AAAA
64 AAAA
* *
770159 G-TGCCATGGAGTTGTGGACTTTAAAAAGAAAAAGGTGCCACGGAGTTGTGGGCTTTGAAAAG-A
1 GATGCCACGGAGTTGTGGAC-TT-AAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAA
770222 AAAA
64 AAAA
* * * ** *
770226 TATGCCACGGAGTTGTGCACTTAAAA-AAAAGGGTGCCATAGAGTCGTGGAC-TTGAAGAAGA
1 GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAA-AAGA
770287 GATGCCACTA
Statistics
Matches: 682, Mismatches: 175, Indels: 113
0.70 0.18 0.12
Matches are distributed among these distances:
59 25 0.04
60 10 0.01
61 26 0.04
62 15 0.02
63 14 0.02
64 32 0.05
65 153 0.22
66 86 0.13
67 228 0.33
68 62 0.09
69 31 0.05
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (67 bp):
GATGCCACGGAGTTGTGGACTTAAAAGAAAAAGGTGCCACGGAGTTGTGGACTTTGAAAAGAAAA
AA
Found at i:769810 original size:27 final size:27
Alignment explanation
Indices: 769772--769826 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
769762 AAAAGAAGAA
*
769772 GGTGCCACGGAGTTGTGGACTTGAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
*
769799 GGTGCCATGGAGTTGTGGACTTAAAAG
1 GGTGCCACGGAGTTGTGGACTTAAAAG
769826 G
1 G
769827 AAAGGATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.13, G:0.40, T:0.24
Consensus pattern (27 bp):
GGTGCCACGGAGTTGTGGACTTAAAAG
Found at i:769966 original size:33 final size:32
Alignment explanation
Indices: 769888--769982 Score: 91
Period size: 33 Copynumber: 2.9 Consensus size: 32
769878 ATGGGCTTTG
* * * * *
769888 AAAAGAAAAAGTTGCCACAGAGTTTTAGACTTA
1 AAAAGAAAAAGGTGCCACA-AGTTATGGAATGA
* *
769921 AAAGGAACAAGGTGCCACTAAGTTATGGAATGA
1 AAAAGAAAAAGGTGCCAC-AAGTTATGGAATGA
*
769954 AAAAGAAAAAGGTGCCACGAAGTTGTGGA
1 AAAAGAAAAAGGTGCCAC-AAGTTATGGA
769983 CTTAAAAGGG
Statistics
Matches: 50, Mismatches: 11, Indels: 2
0.79 0.17 0.03
Matches are distributed among these distances:
33 49 0.98
34 1 0.02
ACGTcount: A:0.44, C:0.12, G:0.25, T:0.19
Consensus pattern (32 bp):
AAAAGAAAAAGGTGCCACAAGTTATGGAATGA
Found at i:769997 original size:27 final size:28
Alignment explanation
Indices: 769959--770013 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
769949 AATGAAAAAG
*
769959 AAAAAGGTGCCAC-GAAGTTGTGGACTT
1 AAAAAGGTGCCACAGAAGTTGTAGACTT
* *
769986 AAAAGGGTGCCACAGGAGTTGTAGACTT
1 AAAAAGGTGCCACAGAAGTTGTAGACTT
770014 TTGAAGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 12 0.50
28 12 0.50
ACGTcount: A:0.33, C:0.15, G:0.31, T:0.22
Consensus pattern (28 bp):
AAAAAGGTGCCACAGAAGTTGTAGACTT
Found at i:770112 original size:33 final size:33
Alignment explanation
Indices: 770035--770278 Score: 160
Period size: 33 Copynumber: 7.4 Consensus size: 33
770025 GAGTGCGATG
* ** * * *
770035 GAGTTGTGGGCTTTGGAAATAAAAGGGTACCAC
1 GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * * *
770068 GAAGTTATGGAC-TTAAAAGGAACAAGGTACCATC
1 G-AGTTGTGGACTTTAAAAAGAAAAAGGTGCCA-C
* * *
770102 GAGTTGTGGAC-ATAAAAAG-AAAAGATGTCAC
1 GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
770133 GGAGTTGTGAACTTTAAAAA-AAAAAAGTGCCATG
1 -GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCA-C
770167 GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
1 GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * **
770200 GGAGTTGTGGGCTTTGAAAAGAAAAATATGCCAC
1 -GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
* * *
770234 GGAGTTGTGCAC-TT-AAAA-AAAAGGGTGCCATA
1 -GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCA-C
*
770266 GAGTCGTGGACTT
1 GAGTTGTGGACTT
770279 GAAGAAGAGA
Statistics
Matches: 165, Mismatches: 36, Indels: 21
0.74 0.16 0.09
Matches are distributed among these distances:
31 19 0.12
32 22 0.13
33 64 0.39
34 60 0.36
ACGTcount: A:0.38, C:0.12, G:0.28, T:0.23
Consensus pattern (33 bp):
GAGTTGTGGACTTTAAAAAGAAAAAGGTGCCAC
Found at i:770293 original size:30 final size:30
Alignment explanation
Indices: 770266--770481 Score: 166
Period size: 30 Copynumber: 7.0 Consensus size: 30
770256 GGGTGCCATA
*
770266 GAGTCGTGGACTTGAAGAAGAGATGCCACT
1 GAGTCATGGACTTGAAGAAGAGATGCCACT
* * *
770296 AAGTCATGGA-TGTGGAGAAGAGATGTCACT
1 GAGTCATGGACT-TGAAGAAGAGATGCCACT
* * *
770326 GAGTCATGGGCTTTAGGAAGGAGATGCCACT
1 GAGTCATGGACTTGAAGAA-GAGATGCCACT
* *
770357 GAGTCATGGACTTTGGGAGAAAAAAGATGCCACT
1 GAGTCATGGAC-TT--GA-AGAAGAGATGCCACT
* * *
770391 AAGTCATGGACTTGGAAGAAAAAAATGCCACT
1 GAGTCATGGACTT-GAAG-AAGAGATGCCACT
* * * *
770423 GAGTCCTGGACTTGGAGAAGAAATACCTACT
1 GAGTCATGGACTTGAAGAAGAGATGCC-ACT
* * *
770454 GAGTCATGGATTTTAGGAAG-GATGCCAC
1 GAGTCATGGACTTGAAGAAGAGATGCCAC
770482 AGTGTCGTGG
Statistics
Matches: 147, Mismatches: 30, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
29 3 0.02
30 48 0.33
31 43 0.29
32 28 0.19
33 2 0.01
34 21 0.14
35 2 0.01
ACGTcount: A:0.33, C:0.15, G:0.30, T:0.22
Consensus pattern (30 bp):
GAGTCATGGACTTGAAGAAGAGATGCCACT
Found at i:770390 original size:34 final size:32
Alignment explanation
Indices: 770286--770463 Score: 161
Period size: 31 Copynumber: 5.6 Consensus size: 32
770276 CTTGAAGAAG
* * *
770286 AGATGCCACTAAGTCATGGA-TGTGGAG-AAG
1 AGATGCCACTGAGTCATGGACTTTGGAGAAAA
* * * **
770316 AGATGTCACTGAGTCATGGGCTTTAG-GAAGG
1 AGATGCCACTGAGTCATGGACTTTGGAGAAAA
770347 AGATGCCACTGAGTCATGGACTTTGGGAGAAAAA
1 AGATGCCACTGAGTCATGGACTTT-GGAG-AAAA
*
770381 AGATGCCACTAAGTCATGGAC-TTGGAAGAAAA
1 AGATGCCACTGAGTCATGGACTTTGG-AGAAAA
* * *
770413 AAATGCCACTGAGTCCTGGAC-TTGGAGAAGA
1 AGATGCCACTGAGTCATGGACTTTGGAGAAAA
*
770444 A-ATACCTACTGAGTCATGGA
1 AGATGCC-ACTGAGTCATGGA
770464 TTTTAGGAAG
Statistics
Matches: 123, Mismatches: 18, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
30 22 0.18
31 45 0.37
32 29 0.24
33 5 0.04
34 22 0.18
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (32 bp):
AGATGCCACTGAGTCATGGACTTTGGAGAAAA
Found at i:770461 original size:97 final size:95
Alignment explanation
Indices: 770286--770463 Score: 218
Period size: 97 Copynumber: 1.9 Consensus size: 95
770276 CTTGAAGAAG
* * * * * *
770286 AGATGCCACTAAGTCATGGATGTGGAGAAGAGATGTCACTGAGTCATGGGCTTTAGGAAGGAGAT
1 AGATGCCACTAAGTCATGGATGTGGAGAAAAAATGCCACTGAGTCATGGACTTTAGGAAAGAAAT
*
770351 GCCACTGAGTCATGGACTTTGGGAGAAAAA
66 ACCACTGAGTCATGGACTTTGGGAGAAAAA
*
770381 AGATGCCACTAAGTCATGGACT-TGGAAGAAAAAAATGCCACTGAGTCCTGGAC-TT-GGAGAAG
1 AGATGCCACTAAGTCATGGA-TGTGG-AG-AAAAAATGCCACTGAGTCATGGACTTTAGGA-AAG
770443 AAATACCTACTGAGTCATGGA
62 AAATACC-ACTGAGTCATGGA
770464 TTTTAGGAAG
Statistics
Matches: 70, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
95 26 0.37
96 12 0.17
97 32 0.46
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (95 bp):
AGATGCCACTAAGTCATGGATGTGGAGAAAAAATGCCACTGAGTCATGGACTTTAGGAAAGAAAT
ACCACTGAGTCATGGACTTTGGGAGAAAAA
Found at i:771741 original size:18 final size:17
Alignment explanation
Indices: 771705--771739 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
771695 AATTTTTGTG
771705 TGTTTTTTTTTTTGCTT
1 TGTTTTTTTTTTTGCTT
771722 TGTTTTTTTTTTTGCTT
1 TGTTTTTTTTTTTGCTT
771739 T
1 T
771740 TGACTTCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.00, C:0.06, G:0.11, T:0.83
Consensus pattern (17 bp):
TGTTTTTTTTTTTGCTT
Found at i:779206 original size:32 final size:32
Alignment explanation
Indices: 779134--779402 Score: 214
Period size: 32 Copynumber: 8.3 Consensus size: 32
779124 AAATCTCTTC
* *
779134 TCAAAGCCCACGACTCAGTGGCAAT-CTCTTC-
1 TCAAAGTCCACGACTCAGTGGC-ATCCTTTTCT
779165 TCAAAGTCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCCTTTTCT
779197 TCAAAGTCCACGACTCAGTGGCAT--TTTGTC-
1 TCAAAGTCCACGACTCAGTGGCATCCTTT-TCT
779227 TCAAAGTCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGTCCACGACTCAGTGGCATCCTTTTCT
* * *
779259 TCAAAGCCCACAACTCCGTGGCA-CCTTTTTCTTT
1 TCAAAGTCCACGACTCAGTGGCATCC-TTTTC--T
* * * * *
779293 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCT
1 TCAAAGTCCACGACTCAGTGGCA-TCCTTTT--CT
** * *
779328 TTTAAGTCCACAACTCCGTGGCA-CCTTGTTCCT
1 TCAAAGTCCACGACTCAGTGGCATCCTT-TT-CT
** *
779361 TTTAAGTCCACGACTCCGTGGCA-CCTTCTT-T
1 TCAAAGTCCACGACTCAGTGGCATCCTT-TTCT
*
779392 TCAAAGCCCAC
1 TCAAAGTCCAC
779403 AATTTCGTGG
Statistics
Matches: 209, Mismatches: 15, Indels: 28
0.83 0.06 0.11
Matches are distributed among these distances:
30 29 0.14
31 41 0.20
32 52 0.25
33 34 0.16
34 25 0.12
35 26 0.12
36 1 0.00
37 1 0.00
ACGTcount: A:0.22, C:0.33, G:0.15, T:0.30
Consensus pattern (32 bp):
TCAAAGTCCACGACTCAGTGGCATCCTTTTCT
Found at i:779246 original size:62 final size:62
Alignment explanation
Indices: 779134--779281 Score: 235
Period size: 62 Copynumber: 2.4 Consensus size: 62
779124 AAATCTCTTC
779134 TCAAAGCCCACGACTCAGTGGCAATCTCTTCTCAAAGTCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGC-ATCTCTTCTCAAAGTCCACGACTCAGTGGCATCCTTTTCT
* *
779197 TCAAAGTCCACGACTCAGTGGCAT-TTTGTCTCAAAGTCCACGACTCAGTGGCATCCTTTTCT
1 TCAAAGCCCACGACTCAGTGGCATCTCT-TCTCAAAGTCCACGACTCAGTGGCATCCTTTTCT
* *
779259 TCAAAGCCCACAACTCCGTGGCA
1 TCAAAGCCCACGACTCAGTGGCA
779282 CCTTTTTCTT
Statistics
Matches: 79, Mismatches: 5, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
61 2 0.03
62 56 0.71
63 21 0.27
ACGTcount: A:0.24, C:0.32, G:0.17, T:0.26
Consensus pattern (62 bp):
TCAAAGCCCACGACTCAGTGGCATCTCTTCTCAAAGTCCACGACTCAGTGGCATCCTTTTCT
Found at i:779304 original size:34 final size:34
Alignment explanation
Indices: 779261--779827 Score: 448
Period size: 34 Copynumber: 17.3 Consensus size: 34
779251 CCTTTTCTTC
779261 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
*
779295 AAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * *
779331 -AAGTCCACAACTCCGTGGCACCTTGTTCCTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
779364 -AAGTCCACGACTCCGTGGCACC---TTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * * * *
779394 AAAGCCCACAATTTCGTGGCAACATTTTTCTTCTC
1 AAAGCCCACAACTCCGTGGC-ACCTTTTTCTTTTT
*
779429 AAAGCCCACCACTCCGTGGCA-CTTTTTCTTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
779462 AAAGCCCATAACTCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT--CTTTTT
* *
779499 AAAGCCCACCACTCTGTGGCA-C-TTTT-TTTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
779530 AAAGCCCACAAAATCCGTGGCACTCTTTTTCCCTTTTC
1 AAAGCCCAC-AACTCCGTGGCAC-CTTTTT--CTTTTT
* *
779568 AAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTT
1 AAAGCCCACAACTCCGTGGCAC-CTTTTT-CTTTTT
* * *
779604 AAAGTCCACGACTCCGTGGCACC---TTCTTTTC
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
779635 AAAGCCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* *
779663 -AAGCCCACAACTCCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTT
* *
779697 -AAGTCCACAACTCTGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
779724 -AAGCCCACAACTTCGTGGCACTTTTTTCATCTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTC-TTTTT
*
779758 -AAGTCCACAACTCCGTGGCACC-----C-TTTT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
* * *
779785 -AAGCCCACAACTCCGTGGCACCTTTCTCCTTCT
1 AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
779818 AAAGCCCACA
1 AAAGCCCACA
779828 CAAGTCGGTG
Statistics
Matches: 436, Mismatches: 58, Indels: 78
0.76 0.10 0.14
Matches are distributed among these distances:
27 66 0.15
28 3 0.01
29 3 0.01
30 6 0.01
31 53 0.12
32 16 0.04
33 58 0.13
34 86 0.20
35 62 0.14
36 29 0.07
37 41 0.09
38 13 0.03
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (34 bp):
AAAGCCCACAACTCCGTGGCACCTTTTTCTTTTT
Found at i:779467 original size:68 final size:67
Alignment explanation
Indices: 779227--779827 Score: 435
Period size: 61 Copynumber: 9.2 Consensus size: 67
779217 GCATTTTGTC
* * * * *
779227 TCAAAGTCCACGACTCAGTGGCATCCTTTTC--TTCAAAGCCCACAACTCCGTGGCACCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCA-CTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC
779290 TTT
65 TTT
* * *
779293 TTAAAGCCCACAACTCCGTGGCACTCTTTTTCCCTTTT-AAGTCCACAACTCCGTGGCACCTTGT
1 TCAAAGCCCACAACTCCGTGGCA--CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACCTT-T
*
779357 TCCTTT
62 TTCTTT
* * * * * * *
779363 T--AAGTCCACGACTCCGTGGCAC--CTTCTTTTCAAAGCCCACAATTTCGTGGCAACATTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGC-ACCTTTTTC
*
779424 TTC
65 TTT
* *
779427 TCAAAGCCCACCACTCCGTGGCACTTTTTCTTTTTAAAGCCCATAACTCCGTGGCACTCTTTTTC
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCAC-CTTTTT-
779492 CCTTT
64 -CTTT
* * *
779497 TCAAAGCCCACCACTCTGTGGCAC-TTTT-TTTTTAAAGCCCACAAAATCCGTGGCACTCTTTTT
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCAC-AACTCCGTGGCAC-CTTTTT
779560 CCCTTT
64 --CTTT
* * * *
779566 TCAAAGCCCACAACTCTGTGGCACTCTTTTTCCCTTTTAAAGTCCACGACTCCGTGGCACC---T
1 TCAAAGCCCACAACTCCGTGGCA--CTTTTT-CTTTTTAAAGCCCACAACTCCGTGGCACCTTTT
779628 TCTTT
63 TCTTT
* *
779633 TCAAAGCCCACAACTCCGTGGCAC-----CCTTTT-AAGCCCACAACTCCGTGGCACTTTTTTCA
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-
779692 TCTT
65 T-TT
* * * * *
779696 T--AAGTCCACAACTCTGTGGCAC-----CCTTTT-AAGCCCACAACTTCGTGGCACTTTTTTCA
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTC-
779753 TCTT
65 T-TT
* * *
779757 T--AAGTCCACAACTCCGTGGCAC-----CCTTTT-AAGCCCACAACTCCGTGGCACCTTTCTC-
1 TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
*
779813 CT
66 TT
779815 TCTAAAGCCCACA
1 TC-AAAGCCCACA
779828 CAAGTCGGTG
Statistics
Matches: 458, Mismatches: 49, Indels: 61
0.81 0.09 0.11
Matches are distributed among these distances:
58 21 0.05
59 6 0.01
61 120 0.26
62 1 0.00
63 7 0.02
64 24 0.05
65 5 0.01
66 39 0.09
67 34 0.07
68 61 0.13
69 76 0.17
70 35 0.08
71 1 0.00
72 5 0.01
73 11 0.02
74 12 0.03
ACGTcount: A:0.21, C:0.34, G:0.13, T:0.32
Consensus pattern (67 bp):
TCAAAGCCCACAACTCCGTGGCACTTTTTCTTTTTAAAGCCCACAACTCCGTGGCACCTTTTTCT
TT
Found at i:779628 original size:27 final size:28
Alignment explanation
Indices: 779597--779806 Score: 174
Period size: 27 Copynumber: 7.1 Consensus size: 28
779587 CACTCTTTTT
* *
779597 CCCTTTTAAAGTCCACGACTCCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
779625 CCTTCTTTTCAAAGCCCACAACTCCGTGGCA
1 CC--CTTTT-AAAGCCCACAACTCCGTGGCA
779656 CCCTTTT-AAGCCCACAACTCCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
** * *
779683 CTTTTTTCATCTTTAAGTCCACAACTCTGTGGCA
1 CCCTTTT-A-----AAGCCCACAACTCCGTGGCA
*
779717 CCCTTTT-AAGCCCACAACTTCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
** *
779744 CTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTT-A-----AAGCCCACAACTCCGTGGCA
779778 CCCTTTT-AAGCCCACAACTCCGTGGCA
1 CCCTTTTAAAGCCCACAACTCCGTGGCA
779805 CC
1 CC
779807 TTTCTCCTTC
Statistics
Matches: 147, Mismatches: 18, Indels: 35
0.74 0.09 0.17
Matches are distributed among these distances:
27 68 0.46
28 2 0.01
29 5 0.03
30 5 0.03
31 21 0.14
34 46 0.31
ACGTcount: A:0.21, C:0.36, G:0.14, T:0.29
Consensus pattern (28 bp):
CCCTTTTAAAGCCCACAACTCCGTGGCA
Found at i:779827 original size:61 final size:60
Alignment explanation
Indices: 779597--779855 Score: 276
Period size: 61 Copynumber: 4.2 Consensus size: 60
779587 CACTCTTTTT
* *
779597 CCCTTTTAAAGTCCACGACTCCGTGGCACC-TTCT---TTTCAAAGCCCACAACTCCGTGGCA
1 CCCTTTT-AAGCCCACAACTCCGTGGCACCTTTCTCACTTT--AAGCCCACAACTCCGTGGCA
* * * *
779656 CCCTTTTAAGCCCACAACTCCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCTGTGGCA
1 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCA-CTTTAAGCCCACAACTCCGTGGCA
* * * *
779717 CCCTTTTAAGCCCACAACTTCGTGGCACTTTTTTCATCTTTAAGTCCACAACTCCGTGGCA
1 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCA-CTTTAAGCCCACAACTCCGTGGCA
* *
779778 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTC-CTTCTAAAGCCCACACAAGTCGGTGGCAA
1 CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCACTT-T-AAG-CC-CACAACTCCGTGGC-A
*
779842 CCCTTCTAAGCCCA
1 CCCTTTTAAGCCCA
779856 ATATCGCTGG
Statistics
Matches: 175, Mismatches: 15, Indels: 15
0.85 0.07 0.07
Matches are distributed among these distances:
58 19 0.11
59 13 0.07
60 1 0.01
61 112 0.64
62 1 0.01
63 15 0.09
64 14 0.08
ACGTcount: A:0.22, C:0.36, G:0.14, T:0.28
Consensus pattern (60 bp):
CCCTTTTAAGCCCACAACTCCGTGGCACCTTTCTCACTTTAAGCCCACAACTCCGTGGCA
Found at i:779914 original size:49 final size:49
Alignment explanation
Indices: 779861--780358 Score: 663
Period size: 49 Copynumber: 10.5 Consensus size: 49
779851 GCCCAATATC
* *
779861 GCTGGCCTTGAATCAGCATATTGGCACCTTCTTCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
779910 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
*
779959 GCTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780008 GTTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780057 GCTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780100 GCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* * *
780149 ACTGGCCTTGAATCAGCACATTGGCA----C--CTTTAAGTCCAATATC
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* **
780192 GCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780241 GCTGGCCTTGAATCAGCACATT-G-A----CACCTTTAAGTCCAATATA
1 GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780284 GCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAATGTA
1 GCTGGCCTTGAATCAGCACATTGGCACC--TT-CATCTTTAAGTCCAATGTA
780336 GCTGGCCTTGAATCAGCACATTG
1 GCTGGCCTTGAATCAGCACATTG
780359 ACATCCTTTT
Statistics
Matches: 398, Mismatches: 30, Indels: 39
0.85 0.06 0.08
Matches are distributed among these distances:
43 113 0.28
44 1 0.00
45 3 0.01
47 2 0.01
48 1 0.00
49 240 0.60
52 38 0.10
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.32
Consensus pattern (49 bp):
GCTGGCCTTGAATCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
Found at i:780104 original size:43 final size:43
Alignment explanation
Indices: 780041--780314 Score: 350
Period size: 43 Copynumber: 6.1 Consensus size: 43
780031 GCACCTTCAT
*
780041 CTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
780084 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA----C
* *
780131 ATCTTTAAGTCCAATGTAACTGGCCTTGAATCAGCACATTGGCAC
1 --CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
* *
780176 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCA-C
* *
780220 TTTTTCTTTAAGTCCAATGTAGCTGGCCTTGAATCAGCACATTGACAC
1 -----CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
*
780268 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCAC
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
780311 CTTT
1 CTTT
780315 TCCATCTTTA
Statistics
Matches: 201, Mismatches: 18, Indels: 24
0.83 0.07 0.10
Matches are distributed among these distances:
43 121 0.60
44 1 0.00
45 1 0.00
47 1 0.00
48 1 0.00
49 76 0.38
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.32
Consensus pattern (43 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCACATTGGCAC
Found at i:780154 original size:92 final size:92
Alignment explanation
Indices: 779992--780367 Score: 599
Period size: 92 Copynumber: 4.0 Consensus size: 92
779982 GCACCTTCAT
* * * *
779992 CTTTAAGTCCAATGTAGTTGGCCTTGACTCAGCACATTGGCACCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
*
780057 GCTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGACAC
* *
780084 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCATCTTCATCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
* *
780149 ACTGGCCTTGAATCAGCACATTGGCAC
66 GCTGGCCTTGAATCAGCACATTGACAC
* **
780176 CTTTAAGTCCAATATCGCTGGCCTTGAATCAGCATATTGGCACCTTTTTCTTTAAGTCCAATGTA
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
780241 GCTGGCCTTGAATCAGCACATTGACAC
66 GCTGGCCTTGAATCAGCACATTGACAC
*
780268 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCCATCTTTAAGTTCAAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACC--TT-CATCTTTAAGTCCAAT
780333 GTAGCTGGCCTTGAATCAGCACATTGACATC
63 GTAGCTGGCCTTGAATCAGCACATTGACA-C
780364 CTTT
1 CTTT
780368 TTCTCATCTT
Statistics
Matches: 264, Mismatches: 16, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
92 215 0.81
94 2 0.01
95 42 0.16
96 5 0.02
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (92 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTCATCTTTAAGTCCAATGTA
GCTGGCCTTGAATCAGCACATTGACAC
Found at i:780346 original size:52 final size:53
Alignment explanation
Indices: 780268--780421 Score: 193
Period size: 52 Copynumber: 2.9 Consensus size: 53
780258 ACATTGACAC
780268 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTC-CAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
* * * *
780320 CTTTAAGTTCAATGTAGCTGGCCTTGAATCAGCACATTGACATCCTTTTTCTCAT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCA-CC-TTTTCTCAT
* * * * * *
780375 CTTTAAGCCCAATATCGTTGGCCGTGAATCAACATATTGGCATCTTT
1 CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTT
780422 ATCACTTTTC
Statistics
Matches: 85, Mismatches: 14, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
52 38 0.45
53 5 0.06
54 6 0.07
55 36 0.42
ACGTcount: A:0.25, C:0.24, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTTAAGTCCAATATAGCTGGCCTTGAATCAGCATATTGGCACCTTTTCTCAT
Found at i:781325 original size:13 final size:13
Alignment explanation
Indices: 781307--781331 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
781297 CATAAAGTGT
781307 TGTATCGATACAA
1 TGTATCGATACAA
781320 TGTATCGATACA
1 TGTATCGATACA
781332 TATTTTTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (13 bp):
TGTATCGATACAA
Found at i:781412 original size:13 final size:13
Alignment explanation
Indices: 781394--781418 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
781384 ATTACTCAAA
781394 TGTATCGATACAT
1 TGTATCGATACAT
781407 TGTATCGATACA
1 TGTATCGATACA
781419 CTGATCTTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TGTATCGATACAT
Found at i:781469 original size:52 final size:50
Alignment explanation
Indices: 781407--781555 Score: 208
Period size: 52 Copynumber: 2.9 Consensus size: 50
781397 ATCGATACAT
*
781407 TGTATCGATACACTGATCTTTGTATCGATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACT-AT-TATGTATCGATACATGCAGGCAAATTTGCCCAGA
* * *
781459 TGTATCGATACATTATAAAATGTATCAATACATGCAGGCAAATTTGCCCAGA
1 TGTATCGATACACTAT--TATGTATCGATACATGCAGGCAAATTTGCCCAGA
781511 TGTATCGATACACTATTAAATGTATCGATACATGCAGGCAAATTT
1 TGTATCGATACACTATT--ATGTATCGATACATGCAGGCAAATTT
781556 TCATATTTCG
Statistics
Matches: 86, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
51 2 0.02
52 84 0.98
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (50 bp):
TGTATCGATACACTATTATGTATCGATACATGCAGGCAAATTTGCCCAGA
Found at i:790560 original size:21 final size:19
Alignment explanation
Indices: 790527--790569 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 19
790517 GAGATGTTGG
790527 ACATACTAAAAATGCATGAA
1 ACATACTAAAAATGCAT-AA
*
790547 ACATAGCTCAAAATGCATAA
1 ACATA-CTAAAAATGCATAA
790567 ACA
1 ACA
790570 CAGGCTGTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.53, C:0.19, G:0.09, T:0.19
Consensus pattern (19 bp):
ACATACTAAAAATGCATAA
Found at i:792843 original size:8 final size:8
Alignment explanation
Indices: 792827--792900 Score: 51
Period size: 8 Copynumber: 9.0 Consensus size: 8
792817 CATCTTCATG
792827 AAATAAAA
1 AAATAAAA
*
792835 AATTAAAA
1 AAATAAAA
*
792843 AAAT-CAA
1 AAATAAAA
792850 AAATAGAAA
1 AAATA-AAA
*
792859 AATTATAAA
1 AAATA-AAA
* * *
792868 TATTATAA
1 AAATAAAA
*
792876 AAACAATAA
1 AAATAA-AA
792885 AAATAAAA
1 AAATAAAA
792893 AAATAAAA
1 AAATAAAA
792901 TTGGAATAAA
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
7 6 0.12
8 24 0.48
9 20 0.40
ACGTcount: A:0.76, C:0.03, G:0.01, T:0.20
Consensus pattern (8 bp):
AAATAAAA
Found at i:793003 original size:19 final size:19
Alignment explanation
Indices: 792972--793014 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
792962 AAAGAAAAAG
*
792972 AAAAATTCAAAAATAATAA
1 AAAAATTCAAAAATAAGAA
*
792991 AAAAATT-AGAAAATTAGAA
1 AAAAATTCA-AAAATAAGAA
793010 AAAAA
1 AAAAA
793015 GGTAAAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 1 0.05
19 20 0.95
ACGTcount: A:0.74, C:0.02, G:0.05, T:0.19
Consensus pattern (19 bp):
AAAAATTCAAAAATAAGAA
Found at i:794102 original size:23 final size:22
Alignment explanation
Indices: 794065--794107 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
794055 ACAATAAAGT
794065 AAAGAAAAAAAGAAAATAAATAA
1 AAAGAAAAAAAGAAAA-AAATAA
* *
794088 AAAGAAAAGAGGAAAAAAAT
1 AAAGAAAAAAAGAAAAAAAT
794108 GAGAATAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 4 0.22
23 14 0.78
ACGTcount: A:0.79, C:0.00, G:0.14, T:0.07
Consensus pattern (22 bp):
AAAGAAAAAAAGAAAAAAATAA
Found at i:798777 original size:166 final size:163
Alignment explanation
Indices: 798425--799022 Score: 701
Period size: 166 Copynumber: 3.7 Consensus size: 163
798415 TTTTCGAGAA
* *
798425 GATTTTTCTTAGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTAATAATTAATTTA
1 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCAT-ATTAATTTA
* * *
798490 CTTTTAAAAAATTCATTCATTTTCATAAATTTTGAATTTTTT-CTTAAAT---TT-TTTTTGAAA
65 ATTTTAAAAAATGCATTCATTTTCATAAATTTTGAATTTTTTCCTGAAATCCCTTGTTTTTGAAA
* *
798550 TACAGAGTTTTTTACTTCGTAAATTTTTTCGGGAG
130 AACAGAGTTTTCTACTTCGTAAATTTTTTCGGG-G
798585 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTTAA
1 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTTAA
* * * *
798650 TTTTCAAAAATGCATTTATTTCCATAAATTTTGAATTTTTTCCTCGAAAGTCCCTTGTTTTCGAA
66 TTTTAAAAAATGCATTCATTTTCATAAATTTTGAATTTTTTCCT-GAAA-TCCCTTGTTTTTGAA
*
798715 AAACATAGTTTTCTACTTCGTAAATTTTTTCAGGGG
129 AAACAGAGTTTTCTACTTCGTAAATTTTTTC-GGGG
* ** * * ** * *
798751 AATTTTTCTTTTTTTTTAATTTTTAAAATTCATCAAATATTATTACTTATTTCATAAAAAATTAG
1 GATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTTAA
*
798816 TTTTAAAAAATGCATTCATTTTCATGAGATTTTG--TGTTTTTCCTTGAAATTCCCTTGTTTTTG
66 TTTTAAAAAATGCATTCATTTTCAT-AAATTTTGAAT-TTTTTCC-TGAAA-TCCCTTGTTTTTG
* * * * * *
798879 AAAAACGGATTTTTCTACTCCATAATTTATTTTGGGGG
127 AAAAACAGAGTTTTCTACTTCGTAAATT-TTTTCGGGG
*
798917 GATTTTTCTTGGTTTTTAATTTTTAAAA-TCTATAAAATATTATTATTTATTTCATATTAAATCT
1 GATTTTTCTTGGTTTTTAATTTTTAAAATTC-ATAAAATATTATTATTTATTTCATATT-AATTT
* * ** * * *
798981 -GTTTTCAAAAATATATTCATTTTCATGAGTTTTGATTTTTTT
64 AATTTTAAAAAATGCATTCATTTTCATAAATTTTGAATTTTTT
799023 TAAATCCCCC
Statistics
Matches: 373, Mismatches: 49, Indels: 26
0.83 0.11 0.06
Matches are distributed among these distances:
159 46 0.12
160 55 0.15
161 3 0.01
162 1 0.00
165 10 0.03
166 239 0.64
167 19 0.05
ACGTcount: A:0.31, C:0.09, G:0.08, T:0.52
Consensus pattern (163 bp):
GATTTTTCTTGGTTTTTAATTTTTAAAATTCATAAAATATTATTATTTATTTCATATTAATTTAA
TTTTAAAAAATGCATTCATTTTCATAAATTTTGAATTTTTTCCTGAAATCCCTTGTTTTTGAAAA
ACAGAGTTTTCTACTTCGTAAATTTTTTCGGGG
Found at i:799680 original size:10 final size:10
Alignment explanation
Indices: 799665--799711 Score: 67
Period size: 10 Copynumber: 4.4 Consensus size: 10
799655 AAACAAGTGA
799665 AAAAAAAAAG
1 AAAAAAAAAG
799675 AAAAAAAAAG
1 AAAAAAAAAG
799685 AAAGAAAAAAAG
1 -AA-AAAAAAAG
799697 AGAAAAAAAAG
1 A-AAAAAAAAG
799708 AAAA
1 AAAA
799712 TTCCAAGCAT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
10 13 0.38
11 12 0.35
12 9 0.26
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:799700 original size:14 final size:14
Alignment explanation
Indices: 799664--799711 Score: 64
Period size: 14 Copynumber: 3.5 Consensus size: 14
799654 GAAACAAGTG
799664 AAAAAAA-AAAGAA
1 AAAAAAAGAAAGAA
799677 AAAAAAAGAAAGAA
1 AAAAAAAGAAAGAA
*
799691 AAAAAGAGAAA-AA
1 AAAAAAAGAAAGAA
799704 AAAGAAAA
1 AAA-AAAA
799712 TTCCAAGCAT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
13 12 0.39
14 19 0.61
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAAGAA
Found at i:800121 original size:7 final size:7
Alignment explanation
Indices: 800111--800136 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
800101 ATAATTTTTA
800111 ATAATAT
1 ATAATAT
800118 ATAATAT
1 ATAATAT
800125 ATAATAT
1 ATAATAT
800132 ATAAT
1 ATAAT
800137 TTTTATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (7 bp):
ATAATAT
Found at i:800163 original size:15 final size:15
Alignment explanation
Indices: 800145--800174 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
800135 ATTTTTATAA
*
800145 TATAAATTTAATGCT
1 TATAAATGTAATGCT
800160 TATAAATGTAATGCT
1 TATAAATGTAATGCT
800175 AAAAATCTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.40, C:0.07, G:0.10, T:0.43
Consensus pattern (15 bp):
TATAAATGTAATGCT
Found at i:801282 original size:3 final size:3
Alignment explanation
Indices: 801269--801325 Score: 105
Period size: 3 Copynumber: 18.7 Consensus size: 3
801259 TGAATTTTAA
801269 AAT AGAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT A-AT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
801315 AAT AAT AAT AA
1 AAT AAT AAT AA
801326 AGATTTTTTT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
3 50 0.94
4 3 0.06
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:801903 original size:155 final size:153
Alignment explanation
Indices: 801608--802136 Score: 566
Period size: 155 Copynumber: 3.4 Consensus size: 153
801598 ATTATCCTAG
* * *
801608 GTCCTTTAGGGGTA-CTGAGTACTTTTACGTCAAAGGTATCCTCA-AGAGGTATTTTCATAATTT
1 GTCCTTTAGGGGTATC-GAGTACTTTTACGTCAAAGGTATCC-CATAGGGGCATTTTCGTAATTT
* * ** * *
801671 TTTAAAATCGAGTCCTAGGTTATCACCAGATCCGCTTTTATGCCGAA-AGTAGATATTTAGGATA
64 TTTAAAAT-GAGTCCTTGGTTGTCACTGGGTCTGCTTTTATG-CGAAGA-TAGATATTTAGGATA
* * * *
801735 GGTTTATCCCATCTATTATCTTTTTTAC
126 GGTTCATCTCATCTATTATCCTTTTTAA
* * *
801763 GTCCTTTAGGAGTA-CTGAGTACTTTTACGTCAAAGGTATCCTATAGGGGCATTTTTGTAATTTT
1 GTCCTTTAGGGGTATC-GAGTACTTTTACGTCAAAGGTATCCCATAGGGGCATTTTCGTAATTTT
*
801827 TTAAAACTGAGTCCTTGGTTGTCACTGGGTCTGCTTTTATGTCGAAGATAGATATTTAGGATAAG
65 TTAAAA-TGAGTCCTTGGTTGTCACTGGGTCTGCTTTTATG-CGAAGATAGATATTTAGGATAGG
801892 TTCATCTCATCTATTATCCTTTTTAA
128 TTCATCTCATCTATTATCCTTTTTAA
* * * **
801918 GTCCTTTAGGGGTATCAAGTACTTTTACGTCAAAAGTATCCCCTAACGGCATTTTCGTAATTTTT
1 GTCCTTTAGGGGTATCGAGTACTTTTACGTCAAAGGTATCCCATAGGGGCATTTTCGTAATTTTT
* * * * * * * *
801983 CATAATAACGT-CTTAGGTTGTCA-TCGAGTATGCTTTTATGCTAAAGGTAGATATTTAGAATAG
66 TAAAATGA-GTCCTT-GGTTGTCACT-GGGTCTGCTTTTATGC-GAAGATAGATATTTAGGATAG
*
802046 GTTCATCTCATCTATTAGCCTTTTTAA
127 GTTCATCTCATCTATTATCCTTTTTAA
* * ** * * *
802073 GTCTTTTAGGGGTATCGGGTACTTTTACGTTGAAGGTATCCCCTATGAGCATTTTCGTAATTTT
1 GTCCTTTAGGGGTATCGAGTACTTTTACGTCAAAGGTATCCCATAGGGGCATTTTCGTAATTTT
802137 CCTACAAAAC
Statistics
Matches: 321, Mismatches: 45, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
154 8 0.02
155 310 0.97
156 3 0.01
ACGTcount: A:0.25, C:0.16, G:0.19, T:0.40
Consensus pattern (153 bp):
GTCCTTTAGGGGTATCGAGTACTTTTACGTCAAAGGTATCCCATAGGGGCATTTTCGTAATTTTT
TAAAATGAGTCCTTGGTTGTCACTGGGTCTGCTTTTATGCGAAGATAGATATTTAGGATAGGTTC
ATCTCATCTATTATCCTTTTTAA
Found at i:803807 original size:51 final size:51
Alignment explanation
Indices: 803745--803861 Score: 146
Period size: 51 Copynumber: 2.3 Consensus size: 51
803735 ATTTAACTAG
* * * * *
803745 ATGTATCGATACATTGAAGAATGTAT-GATACATTTGGGTCAAAAACATAGA
1 ATGTATTGATACATTGAAAAATATATCGATACATTTGGATC-AAAACACAGA
* * *
803796 ATGTGTTGATACAATGAAAAATATATCGATACATTTGGATCAAAACCCAGA
1 ATGTATTGATACATTGAAAAATATATCGATACATTTGGATCAAAACACAGA
803847 ATGTATTGATACATT
1 ATGTATTGATACATT
803862 TTTTTTTAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
51 42 0.76
52 13 0.24
ACGTcount: A:0.41, C:0.11, G:0.17, T:0.31
Consensus pattern (51 bp):
ATGTATTGATACATTGAAAAATATATCGATACATTTGGATCAAAACACAGA
Found at i:803929 original size:20 final size:21
Alignment explanation
Indices: 803904--803949 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
803894 TCCAATATTG
803904 ATACATTCACTTA-TGTATCA
1 ATACATTCACTTATTGTATCA
*
803924 ATACATTCACTTATTGTATTA
1 ATACATTCACTTATTGTATCA
803945 ATACA
1 ATACA
803950 AATTGTAGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (21 bp):
ATACATTCACTTATTGTATCA
Found at i:805742 original size:21 final size:21
Alignment explanation
Indices: 805718--805760 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
805708 ACAATGATGA
*
805718 TGAAAAAGATGAA-AAAGTTTT
1 TGAAAAAGA-AAATAAAGTTTT
*
805739 TGAAGAAGAAAATAAAGTTTT
1 TGAAAAAGAAAATAAAGTTTT
805760 T
1 T
805761 AAAGAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 2 0.11
21 17 0.89
ACGTcount: A:0.51, C:0.00, G:0.19, T:0.30
Consensus pattern (21 bp):
TGAAAAAGAAAATAAAGTTTT
Found at i:806682 original size:55 final size:55
Alignment explanation
Indices: 806598--806709 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
806588 GTGGTCTACA
*
806598 AAATTCAGAGATTCGCCGGTTGGGTTCGGGAGTTGGTTACGCGTAGAGAGGTACG
1 AAATTCAGAGATTCACCGGTTGGGTTCGGGAGTTGGTTACGCGTAGAGAGGTACG
806653 AAATTCAGAGATTCACCGGTTGGGTTCGGGAGTTGGTTACGCGTAGAGAGGTACG
1 AAATTCAGAGATTCACCGGTTGGGTTCGGGAGTTGGTTACGCGTAGAGAGGTACG
806708 AA
1 AA
806710 CCTCGCGACG
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.24, C:0.14, G:0.37, T:0.25
Consensus pattern (55 bp):
AAATTCAGAGATTCACCGGTTGGGTTCGGGAGTTGGTTACGCGTAGAGAGGTACG
Found at i:809560 original size:13 final size:13
Alignment explanation
Indices: 809538--809627 Score: 63
Period size: 13 Copynumber: 6.0 Consensus size: 13
809528 GGCAGGAGCT
*
809538 TTGTAGCGATACA
1 TTGTATCGATACA
809551 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
809567 CTTATGTATCGATACA
1 --T-TGTATCGATACA
809583 TTGTATCGATACAACA
1 TTGTATCGAT---ACA
809599 CTTATGTATCGATACA
1 --T-TGTATCGATACA
809615 TTGTATCGATACA
1 TTGTATCGATACA
809628 ACACTTATGT
Statistics
Matches: 64, Mismatches: 1, Indels: 24
0.72 0.01 0.27
Matches are distributed among these distances:
13 30 0.47
14 2 0.03
16 12 0.19
18 2 0.03
19 18 0.28
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.34
Consensus pattern (13 bp):
TTGTATCGATACA
Found at i:809576 original size:19 final size:19
Alignment explanation
Indices: 809552--809646 Score: 106
Period size: 19 Copynumber: 5.6 Consensus size: 19
809542 AGCGATACAT
809552 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
809571 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
809584 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
809603 TGTATCGAT---ACA--T-
1 TGTATCGATACAACACTTA
809616 TGTATCGATACAACACTTA
1 TGTATCGATACAACACTTA
809635 TGTATCGATACA
1 TGTATCGATACA
809647 GTTACTGTTT
Statistics
Matches: 64, Mismatches: 0, Indels: 24
0.73 0.00 0.27
Matches are distributed among these distances:
13 18 0.28
14 2 0.03
16 12 0.19
18 2 0.03
19 30 0.47
ACGTcount: A:0.35, C:0.19, G:0.13, T:0.34
Consensus pattern (19 bp):
TGTATCGATACAACACTTA
Found at i:809585 original size:32 final size:32
Alignment explanation
Indices: 809539--809646 Score: 207
Period size: 32 Copynumber: 3.4 Consensus size: 32
809529 GCAGGAGCTT
*
809539 TGTAGCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
809571 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
809603 TGTATCGATACATTGTATCGATACAACACTTA
1 TGTATCGATACATTGTATCGATACAACACTTA
809635 TGTATCGATACA
1 TGTATCGATACA
809647 GTTACTGTTT
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
32 75 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (32 bp):
TGTATCGATACATTGTATCGATACAACACTTA
Found at i:811975 original size:26 final size:26
Alignment explanation
Indices: 811919--811968 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
811909 ACTTATCTAA
* * *
811919 AATCCCAAATAAAGTTTAATTTTAGT
1 AATCCCAAATAAAATTAAACTTTAGT
*
811945 AATCCCAGATAAAATTAAACTTTA
1 AATCCCAAATAAAATTAAACTTTA
811969 TCAATCCTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.46, C:0.14, G:0.06, T:0.34
Consensus pattern (26 bp):
AATCCCAAATAAAATTAAACTTTAGT
Found at i:816509 original size:17 final size:17
Alignment explanation
Indices: 816487--816525 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
816477 AGTTCCATTA
816487 GCCATTTCTCATTAAAT
1 GCCATTTCTCATTAAAT
816504 GCCATTTCTCATTAAAT
1 GCCATTTCTCATTAAAT
816521 GCCAT
1 GCCAT
816526 GTCTTGAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.08, T:0.38
Consensus pattern (17 bp):
GCCATTTCTCATTAAAT
Found at i:816772 original size:32 final size:32
Alignment explanation
Indices: 816727--816787 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
816717 CATTTAGGTC
* *
816727 AAAACCCAGAATGTATTAATACAATGAAATCA
1 AAAACCCAAAATGTATCAATACAATGAAATCA
*
816759 AAAACCCAAAATGTATCGATACAATGAAA
1 AAAACCCAAAATGTATCAATACAATGAAA
816788 AATGTATCGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.54, C:0.16, G:0.10, T:0.20
Consensus pattern (32 bp):
AAAACCCAAAATGTATCAATACAATGAAATCA
Found at i:821100 original size:66 final size:65
Alignment explanation
Indices: 821017--821149 Score: 198
Period size: 66 Copynumber: 2.0 Consensus size: 65
821007 ATCGATAATA
*
821017 ATCCATAAAAAATACTCTTATTTCCT-GTG-AATTTTTTTCGATGAAAAAGTATCAAAAACTCAA
1 ATCCATAAAAAATACTCTTATTT-CTAGTGAAATTTTTTT-AATGAAAAAGTATCAAAAACTCAA
821080 GT
64 GT
* *
821082 ATCCATCAAAAAATACTCTTATTTCTAGTGAAATTTTTTTAATGAAAAAGTATCAACAACTTAAG
1 ATCCAT-AAAAAATACTCTTATTTCTAGTGAAATTTTTTTAATGAAAAAGTATCAAAAACTCAAG
821147 T
65 T
821148 AT
1 AT
821150 TTCATCAACA
Statistics
Matches: 62, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
65 8 0.13
66 45 0.73
67 9 0.15
ACGTcount: A:0.41, C:0.14, G:0.08, T:0.36
Consensus pattern (65 bp):
ATCCATAAAAAATACTCTTATTTCTAGTGAAATTTTTTTAATGAAAAAGTATCAAAAACTCAAGT
Found at i:822235 original size:95 final size:95
Alignment explanation
Indices: 822136--822325 Score: 362
Period size: 95 Copynumber: 2.0 Consensus size: 95
822126 ATTGATTCGA
822136 AGCTTTGGATAGATACATTTATATTATTAAATCTAACATTTATTTTGCCAAAATATTAATCATAT
1 AGCTTTGGATAGATACATTTATATTATTAAATCTAACATTTATTTTGCCAAAATATTAATCATAT
822201 ATTAAAATTTTAAAAAAATATAAAATCCAT
66 ATTAAAATTTTAAAAAAATATAAAATCCAT
* *
822231 AGCTTTGGATAGATCCATTTATATTATTAAATCTAACATTTATTTTGCTAAAATATTAATCATAT
1 AGCTTTGGATAGATACATTTATATTATTAAATCTAACATTTATTTTGCCAAAATATTAATCATAT
822296 ATTAAAATTTTAAAAAAATATAAAATCCAT
66 ATTAAAATTTTAAAAAAATATAAAATCCAT
822326 TAATTTTATA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
95 93 1.00
ACGTcount: A:0.45, C:0.09, G:0.05, T:0.41
Consensus pattern (95 bp):
AGCTTTGGATAGATACATTTATATTATTAAATCTAACATTTATTTTGCCAAAATATTAATCATAT
ATTAAAATTTTAAAAAAATATAAAATCCAT
Found at i:823465 original size:2 final size:2
Alignment explanation
Indices: 823458--823486 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
823448 TTATTTAACC
823458 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
823487 TAAATTTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:825737 original size:17 final size:17
Alignment explanation
Indices: 825715--825754 Score: 71
Period size: 17 Copynumber: 2.4 Consensus size: 17
825705 GATAGAGTTG
825715 ATAGAGTTTAGACTTAT
1 ATAGAGTTTAGACTTAT
825732 ATAGAGTTTAGACTTAT
1 ATAGAGTTTAGACTTAT
*
825749 CTAGAG
1 ATAGAG
825755 ATAGAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.35, C:0.07, G:0.20, T:0.38
Consensus pattern (17 bp):
ATAGAGTTTAGACTTAT
Found at i:827222 original size:33 final size:33
Alignment explanation
Indices: 827180--827245 Score: 105
Period size: 33 Copynumber: 2.0 Consensus size: 33
827170 AGATAGCCTT
* *
827180 ATATCTTCTTCTTTCTTTTTCTCTTACTTCTTC
1 ATATCTTCTTCTTTATTCTTCTCTTACTTCTTC
*
827213 ATATCTTCTTTTTTATTCTTCTCTTACTTCTTC
1 ATATCTTCTTCTTTATTCTTCTCTTACTTCTTC
827246 CAACCTAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.11, C:0.26, G:0.00, T:0.64
Consensus pattern (33 bp):
ATATCTTCTTCTTTATTCTTCTCTTACTTCTTC
Found at i:833121 original size:24 final size:23
Alignment explanation
Indices: 833093--833178 Score: 67
Period size: 22 Copynumber: 3.8 Consensus size: 23
833083 AAGAAATAGA
833093 ATATATATTAGTATATATATAACT
1 ATATATA-TAGTATATATATAACT
* *
833117 -T-TATACTAATATAAATAT-A-T
1 ATATATA-TAGTATATATATAACT
833137 ATATATATAGTATA-ATA-AAGCT
1 ATATATATAGTATATATATAA-CT
*
833159 ATATATATTACTATATATAT
1 ATATATA-TAGTATATATAT
833179 CAAGCTATTG
Statistics
Matches: 49, Mismatches: 5, Indels: 15
0.71 0.07 0.22
Matches are distributed among these distances:
20 5 0.10
21 8 0.16
22 26 0.53
23 7 0.14
24 3 0.06
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (23 bp):
ATATATATAGTATATATATAACT
Found at i:833183 original size:26 final size:28
Alignment explanation
Indices: 833131--833186 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 28
833121 ACTAATATAA
833131 ATATATATATATATAGTATAATAAAGCT
1 ATATATATATATATAGTATAATAAAGCT
*
833159 ATATATAT-TACTATA-TAT-ATCAAGCT
1 ATATATATATA-TATAGTATAATAAAGCT
833185 AT
1 AT
833187 TGTAGCATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 9 0.35
27 5 0.19
28 12 0.46
ACGTcount: A:0.46, C:0.07, G:0.05, T:0.41
Consensus pattern (28 bp):
ATATATATATATATAGTATAATAAAGCT
Found at i:833186 original size:14 final size:13
Alignment explanation
Indices: 833134--833186 Score: 51
Period size: 12 Copynumber: 4.2 Consensus size: 13
833124 AATATAAATA
833134 TATATATATATAG-
1 TATATATATA-AGC
833147 TATA-ATA-AAGC
1 TATATATATAAGC
*
833158 TATATATATTA-C
1 TATATATATAAGC
833170 TATATATATCAAGC
1 TATATATAT-AAGC
833184 TAT
1 TAT
833187 TGTAGCATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
10 2 0.06
11 5 0.15
12 16 0.48
13 6 0.18
14 4 0.12
ACGTcount: A:0.45, C:0.08, G:0.06, T:0.42
Consensus pattern (13 bp):
TATATATATAAGC
Found at i:837297 original size:20 final size:21
Alignment explanation
Indices: 837272--837312 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
837262 TGAATGTAGT
*
837272 ATGTGTTAAA-TCTATATATA
1 ATGTGTCAAATTCTATATATA
*
837292 ATGTGTCAAATTTTATATATA
1 ATGTGTCAAATTCTATATATA
837313 TAACACTATG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (21 bp):
ATGTGTCAAATTCTATATATA
Found at i:837684 original size:20 final size:21
Alignment explanation
Indices: 837653--837696 Score: 81
Period size: 20 Copynumber: 2.1 Consensus size: 21
837643 TTACACGAAA
837653 GAGCATTCTATGGATCAAATT
1 GAGCATTCTATGGATCAAATT
837674 GAGCA-TCTATGGATCAAATT
1 GAGCATTCTATGGATCAAATT
837694 GAG
1 GAG
837697 AGGAAATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 18 0.78
21 5 0.22
ACGTcount: A:0.34, C:0.14, G:0.23, T:0.30
Consensus pattern (21 bp):
GAGCATTCTATGGATCAAATT
Found at i:838058 original size:16 final size:16
Alignment explanation
Indices: 838037--838069 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
838027 TCTATTCATG
838037 GATCTAATTTAATGAT
1 GATCTAATTTAATGAT
838053 GATCTAATTTAATGAT
1 GATCTAATTTAATGAT
838069 G
1 G
838070 GATATTGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (16 bp):
GATCTAATTTAATGAT
Found at i:838111 original size:15 final size:16
Alignment explanation
Indices: 838080--838136 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
838070 GATATTGAGC
838080 TTTTTGTAAATAAATT
1 TTTTTGTAAATAAATT
*
838096 TTTTTGTAAA-ATA-T
1 TTTTTGTAAATAAATT
*
838110 TTTTT-AAAATAAATT
1 TTTTTGTAAATAAATT
*
838125 TTTTTATAAATA
1 TTTTTGTAAATA
838137 TATTAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 3 0.09
14 8 0.24
15 8 0.24
16 15 0.44
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (16 bp):
TTTTTGTAAATAAATT
Found at i:838348 original size:68 final size:69
Alignment explanation
Indices: 838273--838404 Score: 162
Period size: 68 Copynumber: 1.9 Consensus size: 69
838263 TTTTTATAAA
* * * **
838273 TTAATTAAATTTAAAATATTTA-ATAAAT-AA-TAATGTATTAATTATTATTTTTTAATAAAAAA
1 TTAATTAAACTTAAAAAATTTACATAAATAAATTAA-ATATTAATTATT-TTTTAAAATAAAAAA
838335 TAATAC
64 TAATAC
* *
838341 TTAATTAACCTTAAAAAATTTACATTAATAAATTAAATATTAATTATTTTTTAAAATAAAAAAT
1 TTAATTAAACTTAAAAAATTTACATAAATAAATTAAATATTAATTATTTTTTAAAATAAAAAAT
838405 TAAATTAAAA
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
68 19 0.35
69 19 0.35
70 13 0.24
71 3 0.06
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (69 bp):
TTAATTAAACTTAAAAAATTTACATAAATAAATTAAATATTAATTATTTTTTAAAATAAAAAATA
ATAC
Found at i:838458 original size:19 final size:18
Alignment explanation
Indices: 838434--838471 Score: 58
Period size: 19 Copynumber: 2.1 Consensus size: 18
838424 TATTATTTTT
838434 TTTAATAAAATTAATTAAA
1 TTTAATAAAATTAA-TAAA
*
838453 TTTAATAAATTTAATAAA
1 TTTAATAAAATTAATAAA
838471 T
1 T
838472 AATATATCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (18 bp):
TTTAATAAAATTAATAAA
Found at i:838464 original size:9 final size:9
Alignment explanation
Indices: 838434--838471 Score: 58
Period size: 9 Copynumber: 4.1 Consensus size: 9
838424 TATTATTTTT
838434 TTTAATAAA
1 TTTAATAAA
*
838443 ATTAATTAAA
1 TTTAA-TAAA
838453 TTTAATAAA
1 TTTAATAAA
838462 TTTAATAAA
1 TTTAATAAA
838471 T
1 T
838472 AATATATCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
9 18 0.69
10 8 0.31
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (9 bp):
TTTAATAAA
Found at i:838890 original size:26 final size:26
Alignment explanation
Indices: 838854--838903 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
838844 ATAAAATTAA
*
838854 TTTAATTTATT-TTTATGAAATTTATT
1 TTTAATTTATTATATAT-AAATTTATT
*
838880 TTTATTTTATTATATATAAATTTA
1 TTTAATTTATTATATATAAATTTA
838904 AAATATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTAATTTATTATATATAAATTTATT
Found at i:839447 original size:32 final size:33
Alignment explanation
Indices: 839397--839458 Score: 99
Period size: 32 Copynumber: 1.9 Consensus size: 33
839387 ATTTATGTAA
*
839397 TTTAATTTGATTTATAAAAATGTAAAATTTATT
1 TTTAATTTGAATTATAAAAATGTAAAATTTATT
*
839430 TTTAATTT-AATTATAAAACTGTAAAATTT
1 TTTAATTTGAATTATAAAAATGTAAAATTT
839459 TAAGATTGGC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.50
Consensus pattern (33 bp):
TTTAATTTGAATTATAAAAATGTAAAATTTATT
Found at i:840084 original size:19 final size:19
Alignment explanation
Indices: 840046--840084 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
840036 TAAGTATACC
* *
840046 TCTTTATATTATTTAGTAT
1 TCTTAATATTATTAAGTAT
*
840065 TCTTAATATTATTAATTAT
1 TCTTAATATTATTAAGTAT
840084 T
1 T
840085 TTATGATATG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.31, C:0.05, G:0.03, T:0.62
Consensus pattern (19 bp):
TCTTAATATTATTAAGTAT
Found at i:851391 original size:13 final size:13
Alignment explanation
Indices: 851373--851398 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
851363 AAATATTAAA
851373 ATATTAAAAATAT
1 ATATTAAAAATAT
851386 ATATTAAAAATAT
1 ATATTAAAAATAT
851399 TTTATTAATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
ATATTAAAAATAT
Found at i:851399 original size:30 final size:31
Alignment explanation
Indices: 851338--851399 Score: 83
Period size: 30 Copynumber: 2.0 Consensus size: 31
851328 AATGTAAATA
*
851338 AAAATATAATAAAAATTATTATTTAAAATATT
1 AAAATAT-ATAAAAATTATTATTAAAAATATT
851370 AAAATAT-TAAAAA-TATATATTAAAAATATT
1 AAAATATATAAAAATTAT-TATTAAAAATATT
851400 TTATTAATTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 18 0.64
32 7 0.25
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (31 bp):
AAAATATATAAAAATTATTATTAAAAATATT
Found at i:851436 original size:23 final size:22
Alignment explanation
Indices: 851393--851436 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
851383 TATATATTAA
*
851393 AAATATTTTATTAATTATATTT
1 AAATATTTTATAAATTATATTT
851415 AAATATTTTTATCAAATT-TATT
1 AAATA-TTTTAT-AAATTATATT
851437 ATATTATTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 10 0.53
24 4 0.21
ACGTcount: A:0.41, C:0.02, G:0.00, T:0.57
Consensus pattern (22 bp):
AAATATTTTATAAATTATATTT
Found at i:851461 original size:29 final size:29
Alignment explanation
Indices: 851422--851500 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
851412 TTTAAATATT
* *
851422 TTTATCAAATTTATTATATTA-TTTTAGTA
1 TTTATTAAATTTATAATATTATTTTTA-TA
*
851451 TTTATTAAATTTATAATATTATTTTTATT
1 TTTATTAAATTTATAATATTATTTTTATA
*
851480 TTTATTATATTTA-AA-ATTATT
1 TTTATTAAATTTATAATATTATT
851501 AATGTAATGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 6 0.13
28 2 0.04
29 32 0.71
30 5 0.11
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (29 bp):
TTTATTAAATTTATAATATTATTTTTATA
Found at i:851868 original size:17 final size:17
Alignment explanation
Indices: 851846--851891 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
851836 TTAAAATATT
851846 ATATTAAATATATTATA
1 ATATTAAATATATTATA
*
851863 ATATTATAA-ATAATATA
1 ATATTA-AATATATTATA
851880 ATA-TAAATATAT
1 ATATTAAATATAT
851892 AAATATTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
15 2 0.08
16 5 0.20
17 16 0.64
18 2 0.08
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
ATATTAAATATATTATA
Found at i:851877 original size:22 final size:22
Alignment explanation
Indices: 851831--851896 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 22
851821 AAATATCAAA
* *
851831 AATA-ATTAAAATATTAT-ATT
1 AATATATTATAATATTATAAAT
851851 AAATATATTATAATATTATAAAT
1 -AATATATTATAATATTATAAAT
*
851874 AATATAATATAA-ATATATAAAT
1 AATATATTATAATAT-TATAAAT
851896 A
1 A
851897 TTTAATTGCT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
21 6 0.15
22 31 0.79
23 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (22 bp):
AATATATTATAATATTATAAAT
Found at i:852723 original size:20 final size:20
Alignment explanation
Indices: 852693--852767 Score: 78
Period size: 20 Copynumber: 3.8 Consensus size: 20
852683 TTTTACCTTG
*
852693 ATGTTTCGATACATTTTTCA
1 ATGTATCGATACATTTTTCA
* * * *
852713 ATATATCGATACATGTATGA
1 ATGTATCGATACATTTTTCA
* * *
852733 ATGTATCGATATATTCTACA
1 ATGTATCGATACATTTTTCA
852753 ATGTATCGATACATT
1 ATGTATCGATACATT
852768 ATGTCTTTTT
Statistics
Matches: 42, Mismatches: 13, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 42 1.00
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.41
Consensus pattern (20 bp):
ATGTATCGATACATTTTTCA
Found at i:852760 original size:40 final size:39
Alignment explanation
Indices: 852693--852770 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
852683 TTTTACCTTG
* * *
852693 ATGTTTCGATACATTTTTCAATATATCGATACATGTATGA
1 ATGTATCGATACATTCTACAATATATCGATACAT-TATGA
* *
852733 ATGTATCGATATATTCTACAATGTATCGATACATTATG
1 ATGTATCGATACATTCTACAATATATCGATACATTATG
852771 TCTTTTTACC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.41
Consensus pattern (39 bp):
ATGTATCGATACATTCTACAATATATCGATACATTATGA
Found at i:853703 original size:23 final size:23
Alignment explanation
Indices: 853676--853731 Score: 105
Period size: 22 Copynumber: 2.5 Consensus size: 23
853666 AGCCTTTGAC
853676 CATGCATTTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
853699 CATGCA-TTTTTTTATTATGTTT
1 CATGCATTTTTTTTATTATGTTT
853721 CATGCATTTTT
1 CATGCATTTTT
853732 AATATGTCCA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
22 22 0.69
23 10 0.31
ACGTcount: A:0.18, C:0.11, G:0.09, T:0.62
Consensus pattern (23 bp):
CATGCATTTTTTTTATTATGTTT
Done.