Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold490

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 190694
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.35


File 2 of 2

Found at i:185302 original size:14 final size:14

Alignment explanation


    Indices: 185280--185312  Score: 57
    Period size: 14  Copynumber: 2.4  Consensus size: 14

     185270 TATTTTTATT

                *         
     185280 ATATAAATATAAAA
          1 ATATTAATATAAAA

                          
     185294 ATATTAATATAAAA
          1 ATATTAATATAAAA

                 
     185308 ATATT
          1 ATATT

     185313 TTTAATATTT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  14   18  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (14 bp):   
ATATTAATATAAAA

Done.