Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold498
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1804022
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.36
File 10 of 17
Found at i:912205 original size:20 final size:21
Alignment explanation
Indices: 912180--912221 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
912170 GATCTTACTT
912180 ATTTTATA-A-TTATATAATTA
1 ATTTTATATATTTATAT-ATTA
912200 ATTTTATATATTTATATATTA
1 ATTTTATATATTTATATATTA
912221 A
1 A
912222 GTAATTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
21 6 0.30
22 6 0.30
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTATATATTTATATATTA
Found at i:912687 original size:2 final size:2
Alignment explanation
Indices: 912680--912710 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
912670 ATATTTTTAA
912680 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
912711 AGATGAAAGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:912691 original size:18 final size:18
Alignment explanation
Indices: 912648--912709 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
912638 ATGTATACAA
*
912648 ATATATATTTTTAAAAAT
1 ATATATATTTTTAAATAT
912666 -TATGATATTTTTAAATAT
1 ATAT-ATATTTTTAAATAT
* * *
912684 ATATATATATATATATAT
1 ATATATATTTTTAAATAT
912702 ATATATAT
1 ATATATAT
912710 AAGATGAAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 3 0.08
18 32 0.84
19 3 0.08
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (18 bp):
ATATATATTTTTAAATAT
Found at i:913511 original size:14 final size:14
Alignment explanation
Indices: 913494--913533 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
913484 CATATATTTT
913494 TAAAAAAATATTAA
1 TAAAAAAATATTAA
913508 TAAAAAAA-ACTTAA
1 TAAAAAAATA-TTAA
*
913522 TAAAAATATATT
1 TAAAAAAATATT
913534 TAATTATTGA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
13 1 0.04
14 21 0.91
15 1 0.04
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (14 bp):
TAAAAAAATATTAA
Found at i:914447 original size:17 final size:17
Alignment explanation
Indices: 914416--914466 Score: 50
Period size: 17 Copynumber: 2.8 Consensus size: 17
914406 GTTAGGTTAG
914416 ATTTATATTATAAATATA
1 ATTTAT-TTATAAATATA
*
914434 TATTTATTTA-AAATTTA
1 -ATTTATTTATAAATATA
914451 ATTTAATTTATTAAAT
1 ATTT-ATTTA-TAAAT
914467 TTATAAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
16 4 0.14
17 11 0.39
18 3 0.11
19 10 0.36
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTATTTATAAATATA
Found at i:916245 original size:4 final size:4
Alignment explanation
Indices: 916236--916263 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
916226 TTCAAATACA
916236 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT
916264 TGTTCAGGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (4 bp):
ATTT
Found at i:916475 original size:43 final size:51
Alignment explanation
Indices: 916408--916498 Score: 117
Period size: 45 Copynumber: 1.9 Consensus size: 51
916398 TAAATTTATA
*
916408 AAATATAAATTATTATATATT-AAAA-TTATATAAATAT-ATA-ATATTTT
1 AAATATAAATTATTATATATTAAAAATTTATACAAATATGATATATATTTT
916455 AAATAT-AATTA-TA-ATA-TAAAAATTTATACAAATATGATATATAT
1 AAATATAAATTATTATATATTAAAAATTTATACAAATATGATATATAT
916499 ATATATGATT
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
43 1 0.03
44 7 0.18
45 13 0.33
46 8 0.21
47 10 0.26
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (51 bp):
AAATATAAATTATTATATATTAAAAATTTATACAAATATGATATATATTTT
Found at i:916838 original size:31 final size:31
Alignment explanation
Indices: 916800--916862 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
916790 ACAAATACCA
916800 AAGTAAGCATATCTAGATCTCAATCAGGGAC
1 AAGTAAGCATATCTAGATCTCAATCAGGGAC
*
916831 AAGTAAGCATATTTAGATCTCAATCAGGGAC
1 AAGTAAGCATATCTAGATCTCAATCAGGGAC
916862 A
1 A
916863 TTCATCATAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (31 bp):
AAGTAAGCATATCTAGATCTCAATCAGGGAC
Found at i:918008 original size:25 final size:28
Alignment explanation
Indices: 917977--918032 Score: 82
Period size: 29 Copynumber: 2.1 Consensus size: 28
917967 TAGTGCAAAC
917977 TTAATTTAATTT-T-A-TATAATTTATA
1 TTAATTTAATTTATCATTATAATTTATA
918002 TTAATTTAATTTGATCATTATAATTTATA
1 TTAATTTAATTT-ATCATTATAATTTATA
918031 TT
1 TT
918033 TTATTCTTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
25 12 0.44
27 1 0.04
28 1 0.04
29 13 0.48
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.59
Consensus pattern (28 bp):
TTAATTTAATTTATCATTATAATTTATA
Found at i:918536 original size:69 final size:69
Alignment explanation
Indices: 918452--918657 Score: 304
Period size: 69 Copynumber: 3.0 Consensus size: 69
918442 GATTGCAAAG
* * * *
918452 TCTTTAAGATGTACATGCTTTAAGATGTTATAGTAAACTAAGGGTCAATAGTGCTCGTTACATTT
1 TCTTTAAGATATACATGCTTTAAGATGCTATAGTAAACTAAGGGTCAATAGTGCTCATTACCTTT
918517 GGCA
66 GGCA
*
918521 TCTTTAAGATATACATGCTTTAAGATGCTATAGTAAACTAAGGGTCAATGGTGCTCATTACCTTT
1 TCTTTAAGATATACATGCTTTAAGATGCTATAGTAAACTAAGGGTCAATAGTGCTCATTACCTTT
* *
918586 GCCG
66 GGCA
* * * **
918590 TCTTTAAGATTTACATGCTTTAAGATGCTGTAGTAAACAAAGGGTCGGTAGTGCTCATTACCTTT
1 TCTTTAAGATATACATGCTTTAAGATGCTATAGTAAACTAAGGGTCAATAGTGCTCATTACCTTT
918655 GGC
66 GGC
918658 TAAGCTTAGT
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 123 1.00
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (69 bp):
TCTTTAAGATATACATGCTTTAAGATGCTATAGTAAACTAAGGGTCAATAGTGCTCATTACCTTT
GGCA
Found at i:918757 original size:19 final size:19
Alignment explanation
Indices: 918716--918758 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
918706 CTTACCTTAC
*
918716 AATTTTATTCATAAAAAAT
1 AATTTTATTAATAAAAAAT
*
918735 -ATTTTATTAATTAAAAAT
1 AATTTTATTAATAAAAAAT
918753 AATTTT
1 AATTTT
918759 TATAATATAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 16 0.76
19 5 0.24
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTTTATTAATAAAAAAT
Found at i:918770 original size:18 final size:21
Alignment explanation
Indices: 918726--918770 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
918716 AATTTTATTC
*
918726 ATAAAAAATATTTTATTAATT
1 ATAAATAATATTTTATTAATT
*
918747 AAAAATAAT-TTTTA-TAA-T
1 ATAAATAATATTTTATTAATT
918765 ATAAAT
1 ATAAAT
918771 TATTAATATA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
18 6 0.29
19 3 0.14
20 5 0.24
21 7 0.33
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (21 bp):
ATAAATAATATTTTATTAATT
Found at i:918800 original size:6 final size:6
Alignment explanation
Indices: 918762--918836 Score: 54
Period size: 6 Copynumber: 13.0 Consensus size: 6
918752 TAATTTTTAT
* * *
918762 AATATA AATTATT AATAT- -ATTTA AATTTA AATATA AATATA ACATAATA
1 AATATA AA-TATA AATATA AATATA AATATA AATATA AATATA A-AT-ATA
918811 AA-AT- -ATATA AATAT- AATATA AATATA
1 AATATA AATATA AATATA AATATA AATATA
918837 CAAAATTTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
3 1 0.02
4 5 0.09
5 7 0.12
6 32 0.56
7 8 0.14
8 4 0.07
ACGTcount: A:0.60, C:0.01, G:0.00, T:0.39
Consensus pattern (6 bp):
AATATA
Found at i:919293 original size:21 final size:21
Alignment explanation
Indices: 919251--919293 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
919241 ATCTTTAAAC
* *
919251 ATTTTATTTAAAATTATTTTT
1 ATTTTATTTAAAATAATATTT
919272 ATTTTAATTT-AAATAATATTT
1 ATTTT-ATTTAAAATAATATTT
919293 A
1 A
919294 ATATTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTATTTAAAATAATATTT
Found at i:919391 original size:12 final size:12
Alignment explanation
Indices: 919376--919408 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
919366 AAAATTTTAT
919376 ATTTATATTAAA
1 ATTTATATTAAA
*
919388 ATTTAAATTAAA
1 ATTTATATTAAA
919400 ATTT-TATTA
1 ATTTATATTA
919409 TAAAAATTCA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 4 0.21
12 15 0.79
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (12 bp):
ATTTATATTAAA
Found at i:921214 original size:26 final size:26
Alignment explanation
Indices: 921159--921216 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
921149 TACTATTTAT
* ** *
921159 TAATTAAAAATATATTTATTTAAATT
1 TAATTTAAAATATATAAATTTAAATA
921185 TAATTTAAAATATATAAATATT-AATA
1 TAATTTAAAATATATAAAT-TTAAATA
921211 TAATTT
1 TAATTT
921217 TTTAATATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 25 0.93
27 2 0.07
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (26 bp):
TAATTTAAAATATATAAATTTAAATA
Found at i:922285 original size:14 final size:14
Alignment explanation
Indices: 922256--922284 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
922246 GACTGCTCAT
922256 CCTCACCCCCCCCC
1 CCTCACCCCCCCCC
922270 CCTC-CCCCCCCCC
1 CCTCACCCCCCCCC
922283 CC
1 CC
922285 CCCCAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.03, C:0.90, G:0.00, T:0.07
Consensus pattern (14 bp):
CCTCACCCCCCCCC
Found at i:928415 original size:2 final size:2
Alignment explanation
Indices: 928408--928441 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
928398 GCATTCGAGT
*
928408 AG AG AG AG AG AG AG AG AG AG AG AC AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
928442 CTTTCTTTAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.03, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:929378 original size:2 final size:2
Alignment explanation
Indices: 929371--929401 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
929361 ATAATCAAAA
929371 AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
929402 TTATTTAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:930549 original size:23 final size:25
Alignment explanation
Indices: 930498--930549 Score: 60
Period size: 23 Copynumber: 2.3 Consensus size: 25
930488 TTAAAATTTT
*
930498 ATTT-TATTATTTTTAATATTTTTA
1 ATTTATATTATTTTTAATATTCTTA
930522 A--TATATTATTTTT-ATA-TCTTA
1 ATTTATATTATTTTTAATATTCTTA
930543 ATTTATA
1 ATTTATA
930550 AAAATTTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 7
0.75 0.03 0.22
Matches are distributed among these distances:
21 5 0.21
22 4 0.17
23 14 0.58
24 1 0.04
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (25 bp):
ATTTATATTATTTTTAATATTCTTA
Found at i:930805 original size:2 final size:2
Alignment explanation
Indices: 930798--930836 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
930788 ATCAACAAAC
930798 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
930837 GCTGTAAAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:932013 original size:17 final size:18
Alignment explanation
Indices: 931977--932017 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
931967 TTTTGTCATT
*
931977 AATTTAATAGATTCAATC
1 AATTGAATAGATTCAATC
*
931995 AATTGAATAG-TTGAATC
1 AATTGAATAGATTCAATC
932012 AATTGA
1 AATTGA
932018 TTATATTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.44, C:0.07, G:0.12, T:0.37
Consensus pattern (18 bp):
AATTGAATAGATTCAATC
Found at i:932678 original size:13 final size:13
Alignment explanation
Indices: 932651--932684 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
932641 AAACTTAGTA
*
932651 ATTTGTGTATTTAT
1 ATTT-TGTATATAT
932665 ATTTTGTATATAT
1 ATTTTGTATATAT
932678 ATTTTGT
1 ATTTTGT
932685 TGTGTTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 15 0.79
14 4 0.21
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.65
Consensus pattern (13 bp):
ATTTTGTATATAT
Found at i:932742 original size:18 final size:17
Alignment explanation
Indices: 932697--932742 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
932687 TGTTATAATC
*
932697 ATAT-TTAAAAAATTTT
1 ATATATTAATAAATTTT
932713 ATATA-TATATAAATTTT
1 ATATATTA-ATAAATTTT
932730 GATATATTAATAA
1 -ATATATTAATAA
932743 TTAATAATAT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
16 6 0.24
17 8 0.32
18 9 0.36
19 2 0.08
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (17 bp):
ATATATTAATAAATTTT
Found at i:932763 original size:17 final size:17
Alignment explanation
Indices: 932706--932771 Score: 59
Period size: 17 Copynumber: 4.0 Consensus size: 17
932696 CATATTTAAA
932706 AAATTTT-ATATATATAT
1 AAATTTTAATA-ATATAT
*
932723 AAATTTTGAT-ATAT-T
1 AAATTTTAATAATATAT
*
932738 -AATAATTAATAATATAT
1 AAAT-TTTAATAATATAT
*
932755 AAATTTTAAAAATATAT
1 AAATTTTAATAATATAT
932772 TTACATCGTA
Statistics
Matches: 40, Mismatches: 4, Indels: 10
0.74 0.07 0.19
Matches are distributed among these distances:
14 3 0.08
15 5 0.12
16 8 0.20
17 19 0.47
18 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
AAATTTTAATAATATAT
Found at i:933058 original size:31 final size:29
Alignment explanation
Indices: 933000--933058 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 29
932990 TTTTATCGAG
933000 TTTTAAATTATTAATTTTAAATTCAAATAA
1 TTTTAAATTATT-ATTTTAAATTCAAATAA
933030 TTTTAAATTAATT-TTTTAATCATTCAAAT
1 TTTTAAATT-ATTATTTTAA--ATTCAAAT
933059 TAGAGTTGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
29 6 0.23
30 9 0.35
31 11 0.42
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (29 bp):
TTTTAAATTATTATTTTAAATTCAAATAA
Found at i:933442 original size:2 final size:2
Alignment explanation
Indices: 933435--933470 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
933425 ATCATGAACA
933435 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
933471 GATTCAACAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:933607 original size:13 final size:13
Alignment explanation
Indices: 933589--933613 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
933579 CAATAGTTTC
933589 TTTTTTATTTTTA
1 TTTTTTATTTTTA
933602 TTTTTTATTTTT
1 TTTTTTATTTTT
933614 TTGGTTCTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (13 bp):
TTTTTTATTTTTA
Found at i:934128 original size:2 final size:2
Alignment explanation
Indices: 934123--934158 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
934113 TTTAATACTT
934123 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
934159 ACAAATCCTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:934907 original size:3 final size:3
Alignment explanation
Indices: 934899--934926 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
934889 AAATTATTGA
934899 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT T
934927 TTTTGAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:935099 original size:4 final size:4
Alignment explanation
Indices: 935085--935120 Score: 56
Period size: 4 Copynumber: 9.2 Consensus size: 4
935075 TCCTGCATCT
*
935085 ATAA GTAA ATAA ATAA ATAA ATAA ATAA AT-A ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATAA A
935121 GAAAATAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 3 0.10
4 26 0.90
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
ATAA
Found at i:935573 original size:5 final size:5
Alignment explanation
Indices: 935563--935588 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
935553 TATTAATAGT
935563 AATAA AATAA AATAA AATAA AATAA A
1 AATAA AATAA AATAA AATAA AATAA A
935589 GAAGAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:935727 original size:3 final size:3
Alignment explanation
Indices: 935721--935750 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
935711 TACTATTATT
935721 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
935751 AGAAGGATTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:937528 original size:20 final size:20
Alignment explanation
Indices: 937488--937528 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
937478 CTCATCTTTA
*
937488 TTTTTAAATTAATTTTTTAT
1 TTTTTAAATTAATTTTATAT
937508 TTTTTAAA-TATATTTTATAT
1 TTTTTAAATTA-ATTTTATAT
937528 T
1 T
937529 AATTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 2 0.11
20 17 0.89
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (20 bp):
TTTTTAAATTAATTTTATAT
Found at i:938803 original size:25 final size:24
Alignment explanation
Indices: 938744--938807 Score: 71
Period size: 22 Copynumber: 2.7 Consensus size: 24
938734 TATTTTTAAT
*
938744 ATTTTAATTTATTTTAA-AAATAAA
1 ATTTTAA-TTATTTAAATAAATAAA
*
938768 AATTTAA--ATTTAAATAAATAAA
1 ATTTTAATTATTTAAATAAATAAA
938790 ATTTTTAATTATTTAAAT
1 A-TTTTAATTATTTAAAT
938808 TTGATCTTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
21 6 0.18
22 8 0.24
23 5 0.15
24 6 0.18
25 8 0.24
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (24 bp):
ATTTTAATTATTTAAATAAATAAA
Found at i:940410 original size:21 final size:22
Alignment explanation
Indices: 940372--940427 Score: 62
Period size: 21 Copynumber: 2.6 Consensus size: 22
940362 ATTATTTAAA
*
940372 AATATTATAAAAAATTTAT-ATC
1 AATATT-TAAATAATTTATAATC
* *
940394 AATATTTAAATATTTTATAATT
1 AATATTTAAATAATTTATAATC
940416 AA-ATTTAAATAA
1 AATATTTAAATAA
940428 AAATATTATT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 19 0.66
22 10 0.34
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.45
Consensus pattern (22 bp):
AATATTTAAATAATTTATAATC
Found at i:941147 original size:3 final size:3
Alignment explanation
Indices: 941139--941177 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
941129 ATCTTGCAGA
941139 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
941178 TAAAAAAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:946650 original size:2 final size:2
Alignment explanation
Indices: 946643--946691 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
946633 TTCATATTAG
946643 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
946685 AT AT AT A
1 AT AT AT A
946692 CTATGAAGTA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:947292 original size:6 final size:6
Alignment explanation
Indices: 947281--947305 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
947271 AAAGATATTA
947281 TAATAT TAATAT TAATAT TAATAT T
1 TAATAT TAATAT TAATAT TAATAT T
947306 TTTATAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (6 bp):
TAATAT
Found at i:947938 original size:20 final size:20
Alignment explanation
Indices: 947913--947953 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
947903 AATCGAAAAT
* * *
947913 AATTAATAATTATTTTTAAA
1 AATTAAAAATCATGTTTAAA
947933 AATTAAAAATCATGTTTAAA
1 AATTAAAAATCATGTTTAAA
947953 A
1 A
947954 TTTATAGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (20 bp):
AATTAAAAATCATGTTTAAA
Found at i:949781 original size:14 final size:14
Alignment explanation
Indices: 949751--949780 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
949741 ATATACATTT
949751 AAATATAAATATAA
1 AAATATAAATATAA
949765 AAATAT-AATATAA
1 AAATATAAATATAA
949778 AAA
1 AAA
949781 AAAAACTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAATATAAATATAA
Found at i:949793 original size:19 final size:19
Alignment explanation
Indices: 949749--949795 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
949739 TGATATACAT
*
949749 TTAAATATAAATATAAAAA
1 TTAAATATAAATAAAAAAA
949768 -TATAATATAAA-AAAAAAA
1 TTA-AATATAAATAAAAAAA
949786 CTTAAATATA
1 -TTAAATATA
949796 TTGAATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
18 8 0.33
19 14 0.58
20 2 0.08
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
TTAAATATAAATAAAAAAA
Found at i:951800 original size:14 final size:14
Alignment explanation
Indices: 951781--951815 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
951771 TTAATGATAC
951781 ATAAATATTAAATA
1 ATAAATATTAAATA
*
951795 ATAAATATTTAATA
1 ATAAATATTAAATA
951809 A-AAATAT
1 ATAAATAT
951816 GTATTTTACT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (14 bp):
ATAAATATTAAATA
Found at i:952855 original size:39 final size:39
Alignment explanation
Indices: 952782--952857 Score: 109
Period size: 39 Copynumber: 1.9 Consensus size: 39
952772 TTTAATATTA
* *
952782 ATTAAATTATAATTTAATAATAAAAATATTTTTTATTTAT
1 ATTAAATTATAA-TAAATAATAAAAATAATTTTTATTTAT
952822 ATTAAATTATAA-AAATATATAAAAATAATTTTTATT
1 ATTAAATTATAATAAATA-ATAAAAATAATTTTTATT
952858 ATTTTATAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
38 4 0.12
39 17 0.52
40 12 0.36
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (39 bp):
ATTAAATTATAATAAATAATAAAAATAATTTTTATTTAT
Found at i:954818 original size:13 final size:13
Alignment explanation
Indices: 954800--954825 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
954790 AAAAACGATC
954800 AATAATTATTTTT
1 AATAATTATTTTT
954813 AATAATTATTTTT
1 AATAATTATTTTT
954826 TAGAAATATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
AATAATTATTTTT
Found at i:957605 original size:19 final size:19
Alignment explanation
Indices: 957583--957641 Score: 50
Period size: 19 Copynumber: 3.1 Consensus size: 19
957573 TAAAAATATA
957583 TAAACATTAAAATAATTTT
1 TAAACATTAAAATAATTTT
*
957602 TAAA-ATATATTAAT-ATATTT
1 TAAACAT-TA-AAATAAT-TTT
* *
957622 CAAACAATAAAATAATTTT
1 TAAACATTAAAATAATTTT
957641 T
1 T
957642 TAGATCGGAT
Statistics
Matches: 30, Mismatches: 5, Indels: 10
0.67 0.11 0.22
Matches are distributed among these distances:
18 2 0.07
19 14 0.47
20 13 0.43
21 1 0.03
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAACATTAAAATAATTTT
Found at i:958596 original size:2 final size:2
Alignment explanation
Indices: 958589--958615 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
958579 TAATTACTCC
958589 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
958616 GAGATAATGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:959736 original size:3 final size:3
Alignment explanation
Indices: 959728--959753 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
959718 GAATTCGATA
959728 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
959754 AATTCGTGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:960276 original size:16 final size:17
Alignment explanation
Indices: 960257--960288 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
960247 ATGATATGCA
960257 TTTATAA-TTAAATTTG
1 TTTATAAGTTAAATTTG
960273 TTTATAAGTTAAATTT
1 TTTATAAGTTAAATTT
960289 AATTTATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (17 bp):
TTTATAAGTTAAATTTG
Found at i:974690 original size:3 final size:3
Alignment explanation
Indices: 974684--974728 Score: 81
Period size: 3 Copynumber: 15.0 Consensus size: 3
974674 TATTTAACCC
*
974684 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
974729 CTACCATTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:976311 original size:17 final size:17
Alignment explanation
Indices: 976289--976321 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
976279 AAATGAGTAA
*
976289 CATATTTTTTATTATAT
1 CATATTTATTATTATAT
976306 CATATTTATTATTATA
1 CATATTTATTATTATA
976322 AATAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (17 bp):
CATATTTATTATTATAT
Found at i:976347 original size:12 final size:12
Alignment explanation
Indices: 976330--976360 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
976320 TAAATAATTA
976330 AATATTATAAAT
1 AATATTATAAAT
*
976342 AATATTATAATT
1 AATATTATAAAT
976354 AATATTA
1 AATATTA
976361 ATAATAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
AATATTATAAAT
Found at i:976376 original size:13 final size:13
Alignment explanation
Indices: 976348--976381 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
976338 AAATAATATT
* *
976348 ATAATTAATATTA
1 ATAATAAATATCA
976361 ATAATAAATATCA
1 ATAATAAATATCA
976374 ATAATAAA
1 ATAATAAA
976382 AAATTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.62, C:0.03, G:0.00, T:0.35
Consensus pattern (13 bp):
ATAATAAATATCA
Found at i:976603 original size:17 final size:16
Alignment explanation
Indices: 976583--976633 Score: 66
Period size: 17 Copynumber: 3.1 Consensus size: 16
976573 AAATAAATTT
976583 TTAATTTAAATAAAAGA
1 TTAATTTAAATAAAA-A
*
976600 TTAATTTATATTAAAAA
1 TTAATTTA-AATAAAAA
*
976617 TTTATTTAAATAAAAA
1 TTAATTTAAATAAAAA
976633 T
1 T
976634 AAAATATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 8 0.27
17 16 0.53
18 6 0.20
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (16 bp):
TTAATTTAAATAAAAA
Found at i:976693 original size:31 final size:32
Alignment explanation
Indices: 976607--976684 Score: 101
Period size: 31 Copynumber: 2.5 Consensus size: 32
976597 AGATTAATTT
**
976607 ATATTAAAAATTTA-TTT-AAATAA-AAATAAA
1 ATATTAAAAATTTATTTTAAAATAATTTA-AAA
976637 ATATTAAAAATTTATTTTAAAATAATTTAAAA
1 ATATTAAAAATTTATTTTAAAATAATTTAAAA
976669 AT-TTAAAAATTTATTT
1 ATATTAAAAATTTATTT
976685 GTATATAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 14 0.33
31 17 0.40
32 11 0.26
33 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (32 bp):
ATATTAAAAATTTATTTTAAAATAATTTAAAA
Found at i:976963 original size:17 final size:17
Alignment explanation
Indices: 976941--976995 Score: 64
Period size: 16 Copynumber: 3.4 Consensus size: 17
976931 TATTTAAAAT
976941 ATTTTATATTTATATAA
1 ATTTTATATTTATATAA
976958 ATTTTAATATGTTA-AT-A
1 ATTTT-ATAT-TTATATAA
976975 A-TTTATA-TTATATAA
1 ATTTTATATTTATATAA
976990 ATTTTA
1 ATTTTA
976996 AAATATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 11
0.75 0.00 0.25
Matches are distributed among these distances:
13 3 0.09
14 2 0.06
15 5 0.15
16 7 0.21
17 7 0.21
18 6 0.18
19 3 0.09
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTATATTTATATAA
Found at i:976975 original size:18 final size:18
Alignment explanation
Indices: 976928--976976 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
976918 TATATCATAA
976928 TAATATTTAA-AATATTT
1 TAATATTTAATAATATTT
976945 T-ATATTTATATAA-ATTT
1 TAATATTTA-ATAATATTT
976962 TAATATGTTAATAAT
1 TAATAT-TTAATAAT
976977 TTATATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
16 7 0.26
17 7 0.26
18 10 0.37
19 3 0.11
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATATTTAATAATATTT
Found at i:976989 original size:32 final size:31
Alignment explanation
Indices: 976938--977017 Score: 101
Period size: 32 Copynumber: 2.6 Consensus size: 31
976928 TAATATTTAA
* * *
976938 AATATTTTATATTTATATAAATTTTAATATGTT
1 AATAATTTATA-TTATATAAATTTTAAAAT-AT
976971 AATAATTTATATTATATAAATTTTAAAATAT
1 AATAATTTATATTATATAAATTTTAAAATAT
977002 -AT-ATTTATATTATATA
1 AATAATTTATATTATATA
977018 TTTAATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
29 14 0.32
30 2 0.05
31 1 0.02
32 17 0.39
33 10 0.23
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
AATAATTTATATTATATAAATTTTAAAATAT
Found at i:977724 original size:22 final size:22
Alignment explanation
Indices: 977696--977755 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
977686 TTTAAGTAAT
977696 TTAATTAAATTTAAAATTAAAA
1 TTAATTAAATTTAAAATTAAAA
* * *
977718 TTAATT-AACTCAAAAATAAAA
1 TTAATTAAATTTAAAATTAAAA
*
977739 TT-ATCTAAATTTGAAAT
1 TTAAT-TAAATTTAAAAT
977756 GCTTTAAATA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
20 2 0.07
21 15 0.52
22 12 0.41
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (22 bp):
TTAATTAAATTTAAAATTAAAA
Found at i:977800 original size:15 final size:15
Alignment explanation
Indices: 977761--977803 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
977751 GAAATGCTTT
* *
977761 AAATAATT-AATTTA
1 AAATAATTAAACTCA
977775 AAATAACTTAAACTCA
1 AAATAA-TTAAACTCA
977791 AAATAATTAAACT
1 AAATAATTAAACT
977804 TAATAAATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 6 0.24
15 9 0.36
16 10 0.40
ACGTcount: A:0.58, C:0.09, G:0.00, T:0.33
Consensus pattern (15 bp):
AAATAATTAAACTCA
Found at i:977998 original size:16 final size:14
Alignment explanation
Indices: 977964--978008 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
977954 ATCTTAATTC
977964 AAAATAATTTGAACAA
1 AAAATAATTT-AA-AA
977980 AAAATAATTTAAAA
1 AAAATAATTTAAAA
977994 TAAAA-AATTTAAAA
1 -AAAATAATTTAAAA
978008 A
1 A
978009 TTTAAAAACT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.04
14 11 0.39
15 6 0.21
16 10 0.36
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.27
Consensus pattern (14 bp):
AAAATAATTTAAAA
Found at i:978004 original size:14 final size:15
Alignment explanation
Indices: 977946--978007 Score: 58
Period size: 16 Copynumber: 4.1 Consensus size: 15
977936 TGATCCAAAC
977946 ATAAAATAATCTT-AA
1 ATAAAATAAT-TTAAA
*
977961 TTCAAAATAATTTGAACA
1 AT-AAAATAATTT-AA-A
977979 A-AAAATAATTTAAA
1 ATAAAATAATTTAAA
977993 ATAAAA-AATTTAAA
1 ATAAAATAATTTAAA
978007 A
1 A
978008 ATTTAAAAAC
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
14 11 0.28
15 9 0.22
16 18 0.45
17 1 0.03
18 1 0.03
ACGTcount: A:0.63, C:0.05, G:0.02, T:0.31
Consensus pattern (15 bp):
ATAAAATAATTTAAA
Found at i:984217 original size:21 final size:22
Alignment explanation
Indices: 984181--984221 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
984171 ATTTAACGAG
984181 ATTAATATAAATAATTTAATTT
1 ATTAATATAAATAATTTAATTT
*
984203 ATTAATA-ATATAATTTAAT
1 ATTAATATAAATAATTTAAT
984222 AAAATTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (22 bp):
ATTAATATAAATAATTTAATTT
Found at i:984483 original size:22 final size:22
Alignment explanation
Indices: 984458--984512 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
984448 ATTAATTAAT
*
984458 ATATTATTTATAATATA-TTATA
1 ATATTATATAT-ATATAGTTATA
*
984480 ATATTATATATATATAGTTATT
1 ATATTATATATATATAGTTATA
*
984502 ATACTATATAT
1 ATATTATATAT
984513 GAAACTTTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATTATATATATATAGTTATA
Found at i:985927 original size:14 final size:15
Alignment explanation
Indices: 985884--985947 Score: 64
Period size: 14 Copynumber: 4.4 Consensus size: 15
985874 TGAGGAAATC
985884 ATAACTAAAT-ATGAAT
1 ATAA-TAAATAAT-AAT
* *
985900 ATAATATAT-TTAAT
1 ATAATAAATAATAAT
985914 A-AATAAATAATAAT
1 ATAATAAATAATAAT
985928 ATAAT-AATAATAAT
1 ATAATAAATAATAAT
985942 ATAATA
1 ATAATA
985948 TTTTAAAATA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
13 6 0.15
14 23 0.56
15 8 0.20
16 4 0.10
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
ATAATAAATAATAAT
Found at i:986142 original size:19 final size:19
Alignment explanation
Indices: 986106--986143 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
986096 TTATTTAAAT
986106 TTAATTATAAAAATATATA
1 TTAATTATAAAAATATATA
986125 TTAA-TATAAAAATA-ATA
1 TTAATTATAAAAATATATA
986142 TT
1 TT
986144 TTACTATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 5 0.26
18 10 0.53
19 4 0.21
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (19 bp):
TTAATTATAAAAATATATA
Found at i:988621 original size:9 final size:9
Alignment explanation
Indices: 988607--988637 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
988597 ATTAATTTTA
988607 AAAATATTT
1 AAAATATTT
988616 AAAATATTT
1 AAAATATTT
988625 AAAATAATTT
1 AAAAT-ATTT
988635 AAA
1 AAA
988638 CTATATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 14 0.67
10 7 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAATATTT
Found at i:991780 original size:26 final size:26
Alignment explanation
Indices: 991751--991805 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
991741 TAATAAAATT
991751 TTTTATT-AAACTTGACAAAT-TAAAAA
1 TTTTATTGAAA-TTG-CAAATATAAAAA
*
991777 TTTTATTGAAATTGTAAATATAAAAA
1 TTTTATTGAAATTGCAAATATAAAAA
991803 TTT
1 TTT
991806 ATTTTAAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 4 0.15
26 19 0.73
27 3 0.12
ACGTcount: A:0.47, C:0.04, G:0.05, T:0.44
Consensus pattern (26 bp):
TTTTATTGAAATTGCAAATATAAAAA
Found at i:992475 original size:19 final size:21
Alignment explanation
Indices: 992438--992477 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
992428 ATTTAATTTA
992438 ATTTTATTCTTATAAAATAATT
1 ATTTTATTCTTAT-AAATAATT
992460 ATTTTATT-TTAT-AATAAT
1 ATTTTATTCTTATAAATAAT
992478 ACATCAATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.33
21 4 0.22
22 8 0.44
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTATTCTTATAAATAATT
Found at i:1001293 original size:22 final size:22
Alignment explanation
Indices: 1001253--1001314 Score: 76
Period size: 22 Copynumber: 2.9 Consensus size: 22
1001243 AACTTAATGA
*
1001253 TAAAATATT-TA-ATATAAATT
1 TAAAATATTATATTTATAAATT
1001273 TAAAATATTATATTTATAAATT
1 TAAAATATTATATTTATAAATT
*
1001295 T-AAATTTTATCATTTATAAA
1 TAAAATATTAT-ATTTATAAA
1001315 AATATTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.24
21 10 0.27
22 18 0.49
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAATATTATATTTATAAATT
Found at i:1001713 original size:20 final size:16
Alignment explanation
Indices: 1001661--1001705 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
1001651 ATTTTTACTT
*
1001661 TTAAA-AAATTTTTAA
1 TTAAATAAATATTTAA
1001676 TTAAATAAATATTTAA
1 TTAAATAAATATTTAA
1001692 TTAAATTAAATATT
1 TTAAA-TAAATATT
1001706 ACTTAATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 5 0.19
16 14 0.52
17 8 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
TTAAATAAATATTTAA
Found at i:1003682 original size:15 final size:15
Alignment explanation
Indices: 1003662--1003694 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
1003652 TGATTTTTTA
1003662 TTATTTTTGAA-ATAT
1 TTATTTTT-AATATAT
1003677 TTATTTTTAATATAT
1 TTATTTTTAATATAT
1003692 TTA
1 TTA
1003695 AATATAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 2 0.12
15 15 0.88
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (15 bp):
TTATTTTTAATATAT
Found at i:1004923 original size:18 final size:18
Alignment explanation
Indices: 1004882--1004914 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
1004872 TATCCGTTAG
1004882 TTAAAAAGATATTATAAT
1 TTAAAAAGATATTATAAT
1004900 TTAAAAA-A-ATTATAA
1 TTAAAAAGATATTATAA
1004915 ATATTAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 1 0.07
18 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.36
Consensus pattern (18 bp):
TTAAAAAGATATTATAAT
Found at i:1005304 original size:22 final size:23
Alignment explanation
Indices: 1005274--1005318 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
1005264 ATATGTTTAT
1005274 TATTATAAAACTTA-AAAGTTAAA
1 TATTATAAAACTTATAAA-TTAAA
*
1005297 TATT-TAAATCTTATAAATTAAA
1 TATTATAAAACTTATAAATTAAA
1005319 AAAATAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 13 0.65
23 7 0.35
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (23 bp):
TATTATAAAACTTATAAATTAAA
Found at i:1005560 original size:14 final size:14
Alignment explanation
Indices: 1005520--1005561 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
1005510 AATTTTTTGA
*
1005520 TATATTTAAATAAT
1 TATATTTAAATATT
*
1005534 TATATTTATATATT
1 TATATTTAAATATT
1005548 TATATTTAAATATT
1 TATATTTAAATATT
1005562 AATTAAACAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATATTTAAATATT
Found at i:1006495 original size:18 final size:18
Alignment explanation
Indices: 1006472--1006511 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
1006462 TATAAATAAG
1006472 TTATCA-GTTTATATATTC
1 TTATCATGTTTATATA-TC
1006490 TTATCATGTTTATATATC
1 TTATCATGTTTATATATC
1006508 TTAT
1 TTAT
1006512 TATATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.28, C:0.10, G:0.05, T:0.57
Consensus pattern (18 bp):
TTATCATGTTTATATATC
Found at i:1007302 original size:3 final size:3
Alignment explanation
Indices: 1007296--1007340 Score: 72
Period size: 3 Copynumber: 14.7 Consensus size: 3
1007286 AATTATTTCT
*
1007296 TTA TTA TTA TTA TTA TTA TTA TTA TATA TAA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TT
1007341 GTATCTGTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
3 36 0.92
4 3 0.08
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:1007353 original size:22 final size:22
Alignment explanation
Indices: 1007296--1007340 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
1007286 AATTATTTCT
*
1007296 TTAT-TATTATTATTATTATTA
1 TTATATATAATTATTATTATTA
1007317 TTATATATAATTATTATTATTA
1 TTATATATAATTATTATTATTA
1007339 TT
1 TT
1007341 GTATCTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 4 0.18
22 18 0.82
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (22 bp):
TTATATATAATTATTATTATTA
Found at i:1007832 original size:13 final size:14
Alignment explanation
Indices: 1007814--1007847 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
1007804 TTCAAGCAGC
1007814 ATAAAAATAAAA-A
1 ATAAAAATAAAAGA
1007827 ATAAAAATAAAAGA
1 ATAAAAATAAAAGA
1007841 A-AAAAAT
1 ATAAAAAT
1007848 TCCTTTCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 18 0.90
14 2 0.10
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (14 bp):
ATAAAAATAAAAGA
Found at i:1007921 original size:29 final size:28
Alignment explanation
Indices: 1007889--1007981 Score: 98
Period size: 29 Copynumber: 3.2 Consensus size: 28
1007879 TTAAAAAACC
* * *
1007889 TTTTAATTTATACTTTTTATTTAAGTAAA
1 TTTTAATTTTTA-TTTATATTTAAATAAA
*
1007918 TTTTTATATTTTTA-TTATATTTAAATATA
1 -TTTTA-ATTTTTATTTATATTTAAATAAA
*
1007947 TTTTTATTTTTATTTATATTTAAATAAAA
1 TTTTAATTTTTATTTATATTTAAAT-AAA
1007976 TTTTAA
1 TTTTAA
1007982 AAATTTGATG
Statistics
Matches: 53, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
27 7 0.13
28 16 0.30
29 19 0.36
30 5 0.09
31 6 0.11
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.62
Consensus pattern (28 bp):
TTTTAATTTTTATTTATATTTAAATAAA
Found at i:1007979 original size:28 final size:29
Alignment explanation
Indices: 1007906--1007980 Score: 100
Period size: 28 Copynumber: 2.6 Consensus size: 29
1007896 TTATACTTTT
*
1007906 TATTTAAGTAAATTTTTATATTTTTATTA
1 TATTTAAATAAATTTTTATATTTTTATTA
*
1007935 TATTTAAATATA-TTTT-TATTTTTATTTA
1 TATTTAAATAAATTTTTATATTTTTA-TTA
*
1007963 TATTTAAATAAAATTTTA
1 TATTTAAATAAATTTTTA
1007981 AAAATTTGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
27 8 0.20
28 18 0.45
29 14 0.35
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (29 bp):
TATTTAAATAAATTTTTATATTTTTATTA
Found at i:1010678 original size:143 final size:148
Alignment explanation
Indices: 1010393--1010685 Score: 506
Period size: 143 Copynumber: 2.0 Consensus size: 148
1010383 TATATGTTAA
* *
1010393 CACTCTTATCTATGTCTTCGGGATGGAGACTTTTGGTTTATAATTGCATGACGAATTGATGATAT
1 CACTCTTATCTATGTCTTCGGGATGGAGACATTTGGTTGATAATTGCATGACGAATTGATGATAT
1010458 ATAAACATCGCATGTCCTGTGTTTTTCAATTTATAATAATCCGTGTGCTGCTTTCCTCTCATGAA
66 ATAAACATCG-ATGTCCTGTGTTTTTCAATTTATAATAATCCGTGTGCTGCTTTCCTCTCATGAA
1010523 ATGAGGCACTTCTTCTAAC
130 ATGAGGCACTTCTTCTAAC
* *
1010542 CACTCTTATCTATGTCTTTGGGATGGAGACATTTGGTTGATAATTGCTTGACGAATTGATGATAT
1 CACTCTTATCTATGTCTTCGGGATGGAGACATTTGGTTGATAATTGCATGACGAATTGATGATAT
1010607 AT-AACAT-G-T-TCC-GTGTTTTTCAATTTATAATAATCCGTGTGCTGCTTTCCTCTCATGAAA
66 ATAAACATCGATGTCCTGTGTTTTTCAATTTATAATAATCCGTGTGCTGCTTTCCTCTCATGAAA
1010667 TGAGGCACTTCTTCTAAC
131 TGAGGCACTTCTTCTAAC
1010685 C
1 C
1010686 CGGGACTTTA
Statistics
Matches: 140, Mismatches: 4, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
143 67 0.48
144 3 0.02
145 1 0.01
147 1 0.01
148 5 0.04
149 63 0.45
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (148 bp):
CACTCTTATCTATGTCTTCGGGATGGAGACATTTGGTTGATAATTGCATGACGAATTGATGATAT
ATAAACATCGATGTCCTGTGTTTTTCAATTTATAATAATCCGTGTGCTGCTTTCCTCTCATGAAA
TGAGGCACTTCTTCTAAC
Found at i:1010859 original size:2 final size:2
Alignment explanation
Indices: 1010852--1010890 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
1010842 AATATAGATC
1010852 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1010891 ACTTTTTGAC
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1013228 original size:3 final size:3
Alignment explanation
Indices: 1013220--1013250 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
1013210 ATATAAGTAC
1013220 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1013251 AACAAAAACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:1020488 original size:15 final size:14
Alignment explanation
Indices: 1020465--1020507 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
1020455 AATCCAATTA
*
1020465 AATTAAATTTTTTT
1 AATTTAATTTTTTT
*
1020479 AATTTGAATTTGTTT
1 AATTT-AATTTTTTT
*
1020494 GATTTAATTTTTTT
1 AATTTAATTTTTTT
1020508 TTAATTTTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (14 bp):
AATTTAATTTTTTT
Found at i:1020825 original size:20 final size:21
Alignment explanation
Indices: 1020796--1020846 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
1020786 TAAACTTTAC
*
1020796 TTAAGATTTTA-ATAGTATTT
1 TTAAGATTTTATATAATATTT
*
1020816 TTAAGTTTTTATATAATATTT
1 TTAAGATTTTATATAATATTT
* *
1020837 TAAAAATTTT
1 TTAAGATTTT
1020847 CATTAATTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 10 0.40
21 15 0.60
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (21 bp):
TTAAGATTTTATATAATATTT
Found at i:1020837 original size:21 final size:20
Alignment explanation
Indices: 1020796--1020837 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
1020786 TAAACTTTAC
*
1020796 TTAAGATTTTAATAGTATTT
1 TTAAGATTTTAATAATATTT
*
1020816 TTAAGTTTTTATATAATATTT
1 TTAAGATTTTA-ATAATATTT
1020837 T
1 T
1020838 AAAAATTTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
TTAAGATTTTAATAATATTT
Found at i:1020986 original size:20 final size:19
Alignment explanation
Indices: 1020948--1021003 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
1020938 ATTAATTTGA
*
1020948 TTTAATAATTTTTTAAAAGAT
1 TTTAATAATATTTT-AAAG-T
1020969 TTTAATAATATTTTAAAGT
1 TTTAATAATATTTTAAAGT
*
1020988 TTTCTATAATATTTTA
1 TTT-AATAATATTTTA
1021004 TTTTTTAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
19 4 0.12
20 15 0.47
21 13 0.41
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (19 bp):
TTTAATAATATTTTAAAGT
Found at i:1021451 original size:13 final size:13
Alignment explanation
Indices: 1021433--1021480 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 13
1021423 TTATGTGTAT
1021433 TATATAATTTAAA
1 TATATAATTTAAA
1021446 TATATAATATTATAA
1 TATATAAT-TTA-AA
1021461 TATA-AATTTTAAAA
1 TATATAA-TTT-AAA
1021475 TATATA
1 TATATA
1021481 TTATCTATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
13 8 0.27
14 13 0.43
15 9 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
TATATAATTTAAA
Found at i:1021480 original size:21 final size:20
Alignment explanation
Indices: 1021433--1021480 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
1021423 TTATGTGTAT
* *
1021433 TATATAATTTAAATATATAA
1 TATATAATATAAATATAAAA
*
1021453 TATTATAATATAAATTTTAAAA
1 TA-TATAATATAAA-TATAAAA
1021475 TATATA
1 TATATA
1021481 TTATCTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 2 0.09
21 14 0.61
22 7 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
TATATAATATAAATATAAAA
Found at i:1022015 original size:23 final size:22
Alignment explanation
Indices: 1021961--1022015 Score: 67
Period size: 23 Copynumber: 2.4 Consensus size: 22
1021951 GATTAAGTAA
*
1021961 AATATTTTAAATAGATTTATTC
1 AATATTTTAAATAAATTTATTC
1021983 AAT-TGATTTAAATAAATTTATTC
1 AATAT--TTTAAATAAATTTATTC
1022006 AGATATTTTA
1 A-ATATTTTA
1022016 TGATATTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
21 1 0.04
22 3 0.11
23 21 0.75
24 2 0.07
25 1 0.04
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.49
Consensus pattern (22 bp):
AATATTTTAAATAAATTTATTC
Found at i:1022384 original size:24 final size:25
Alignment explanation
Indices: 1022352--1022399 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
1022342 AATCTTGATT
*
1022352 ATTTATTT-AATTTAA-TAAATATG
1 ATTTATTTAAATTAAATTAAATATG
1022375 ATTTGATTTAAATTAAATTAAATAT
1 ATTT-ATTTAAATTAAATTAAATAT
1022400 TTAAAAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 4 0.19
25 6 0.29
26 7 0.33
ACGTcount: A:0.46, C:0.00, G:0.04, T:0.50
Consensus pattern (25 bp):
ATTTATTTAAATTAAATTAAATATG
Found at i:1025061 original size:13 final size:13
Alignment explanation
Indices: 1025045--1025075 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
1025035 TTATTTTTTT
1025045 AATTACAATATAA
1 AATTACAATATAA
1025058 AATTACAATATAA
1 AATTACAATATAA
1025071 AATTA
1 AATTA
1025076 AAATTTATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
AATTACAATATAA
Found at i:1025086 original size:15 final size:13
Alignment explanation
Indices: 1025045--1025093 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
1025035 TTATTTTTTT
*
1025045 AATTACAATATAA
1 AATTAAAATATAA
*
1025058 AATTACAATATAA
1 AATTAAAATATAA
1025071 AATTAAAATTTATAA
1 AATTAAAA--TATAA
*
1025086 AAATAAAA
1 AATTAAAA
1025094 AGTTCAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
13 20 0.62
15 12 0.38
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (13 bp):
AATTAAAATATAA
Found at i:1027557 original size:19 final size:20
Alignment explanation
Indices: 1027528--1027571 Score: 56
Period size: 19 Copynumber: 2.2 Consensus size: 20
1027518 TAAAAAAATT
1027528 AATATTAAATAA-AAGATAAA
1 AATATTAAATAATAA-ATAAA
*
1027548 TATATT-AATAATAAATAAA
1 AATATTAAATAATAAATAAA
1027567 AATAT
1 AATAT
1027572 ATATTTAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.66, C:0.00, G:0.02, T:0.32
Consensus pattern (20 bp):
AATATTAAATAATAAATAAA
Found at i:1027586 original size:26 final size:26
Alignment explanation
Indices: 1027525--1027580 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
1027515 AATTAAAAAA
*
1027525 ATTAATATTAAATAAAAGATAAATAT
1 ATTAATAATAAATAAAAGATAAATAT
*
1027551 ATTAATAATAAATAAAA-ATATATAT
1 ATTAATAATAAATAAAAGATAAATAT
1027576 -TTAAT
1 ATTAAT
1027581 TTAATAGTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
24 5 0.18
25 7 0.25
26 16 0.57
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
ATTAATAATAAATAAAAGATAAATAT
Found at i:1027705 original size:23 final size:24
Alignment explanation
Indices: 1027675--1027737 Score: 60
Period size: 23 Copynumber: 2.8 Consensus size: 24
1027665 TAACTAATTA
1027675 AATT-AATTTTTTAATAAAAAT-T
1 AATTCAATTTTTTAATAAAAATAT
* * * *
1027697 ACTTCAATTATTAAAT-TAAATAT
1 AATTCAATTTTTTAATAAAAATAT
*
1027720 AATTTAATTTTTTAATAA
1 AATTCAATTTTTTAATAA
1027738 TATATTATAT
Statistics
Matches: 29, Mismatches: 9, Indels: 4
0.69 0.21 0.10
Matches are distributed among these distances:
22 7 0.24
23 22 0.76
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.49
Consensus pattern (24 bp):
AATTCAATTTTTTAATAAAAATAT
Found at i:1027742 original size:23 final size:23
Alignment explanation
Indices: 1027662--1027742 Score: 53
Period size: 23 Copynumber: 3.6 Consensus size: 23
1027652 TTTATATTAA
*
1027662 TTTTAACT-AAT-TAAATTAATT
1 TTTTAACTAAATATAATTTAATT
* * *
1027683 TTTTAA-TAAAAATTACTTCAATT
1 TTTTAACTAAATA-TAATTTAATT
* * *
1027706 ATTAAATTAAATATAATTTAATT
1 TTTTAACTAAATATAATTTAATT
1027729 TTTTAA-TAATATAT
1 TTTTAACTAA-ATAT
1027743 TATATATATA
Statistics
Matches: 44, Mismatches: 11, Indels: 8
0.70 0.17 0.13
Matches are distributed among these distances:
20 1 0.02
21 8 0.18
22 3 0.07
23 27 0.61
24 5 0.11
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.51
Consensus pattern (23 bp):
TTTTAACTAAATATAATTTAATT
Found at i:1028055 original size:27 final size:28
Alignment explanation
Indices: 1028003--1028077 Score: 86
Period size: 27 Copynumber: 2.8 Consensus size: 28
1027993 AATATTTATA
* *
1028003 ATAATAATTTTT-ATAAATATAGAAAAT
1 ATAATAATTTTTAATATATATAAAAAAT
*
1028030 TTAATAATTTTTAATATAT-TAAAAAAT
1 ATAATAATTTTTAATATATATAAAAAAT
*
1028057 ATAAT-ATATTTAATATA-ATAA
1 ATAATAATTTTTAATATATATAA
1028078 TTTTAAAAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
26 14 0.34
27 22 0.54
28 5 0.12
ACGTcount: A:0.55, C:0.00, G:0.01, T:0.44
Consensus pattern (28 bp):
ATAATAATTTTTAATATATATAAAAAAT
Found at i:1028212 original size:21 final size:22
Alignment explanation
Indices: 1028180--1028226 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
1028170 AAGAAAACTT
1028180 AATTAAATTATTA-AATGATTTA
1 AATTAAATTATTATAAT-ATTTA
1028202 AATTAAA-TATTATAATATTTA
1 AATTAAATTATTATAATATTTA
1028223 AATT
1 AATT
1028227 TATTTATTCG
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
21 14 0.58
22 10 0.42
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (22 bp):
AATTAAATTATTATAATATTTA
Found at i:1032857 original size:2 final size:2
Alignment explanation
Indices: 1032850--1032883 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
1032840 TTTGCTTGAT
1032850 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1032884 GATGTATATT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1033809 original size:22 final size:21
Alignment explanation
Indices: 1033784--1033843 Score: 66
Period size: 22 Copynumber: 2.8 Consensus size: 21
1033774 ATATTAAATT
*
1033784 TTTATTTAAATAAATTAATTAA
1 TTTATTTAATTAAATTAA-TAA
* *
1033806 TTTAATTAATTAAATCGAATAA
1 TTTATTTAATTAAAT-TAATAA
*
1033828 TTAATTTAATTAAATT
1 TTTATTTAATTAAATT
1033844 TTTTAACCTC
Statistics
Matches: 31, Mismatches: 6, Indels: 3
0.77 0.15 0.08
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (21 bp):
TTTATTTAATTAAATTAATAA
Found at i:1035012 original size:16 final size:15
Alignment explanation
Indices: 1034987--1035020 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
1034977 CAAGCCATCA
*
1034987 TGCATTGTTAGACTGT
1 TGCATGGTTAGACT-T
1035003 TGCATGGTTAGACTT
1 TGCATGGTTAGACTT
1035018 TGC
1 TGC
1035021 TCATGGGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.18, C:0.15, G:0.26, T:0.41
Consensus pattern (15 bp):
TGCATGGTTAGACTT
Found at i:1035182 original size:40 final size:40
Alignment explanation
Indices: 1035100--1035183 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
1035090 TTTGATTTAT
*
1035100 ATTATTATTTATTTAATTTTAATTATAAATATTAATAAAA
1 ATTATTATTTATTTAATTTTAATTATAAATATAAATAAAA
*
1035140 ATTATT-TTTATATT-ATTTTAATTAATAAA-ATAAAATATAA
1 ATTATTATTTAT-TTAATTTTAATT-ATAAATAT-AAATAAAA
1035180 ATTA
1 ATTA
1035184 ATTTAATAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
39 16 0.41
40 23 0.59
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (40 bp):
ATTATTATTTATTTAATTTTAATTATAAATATAAATAAAA
Found at i:1035601 original size:25 final size:25
Alignment explanation
Indices: 1035545--1035615 Score: 65
Period size: 25 Copynumber: 2.8 Consensus size: 25
1035535 ATATATTTTT
* *
1035545 TAAA-ATTTAAAATATTATATTTAATT
1 TAAATATTT-AAATA-TATATTAAATA
*
1035571 TTAATATTTAAATATATATTAAATA
1 TAAATATTTAAATATATATTAAATA
*
1035596 TAAATA-TAAAATATGATATT
1 TAAATATTTAAATAT-ATATT
1035616 TAAAAAAAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
24 7 0.18
25 19 0.50
26 8 0.21
27 4 0.11
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.46
Consensus pattern (25 bp):
TAAATATTTAAATATATATTAAATA
Found at i:1035913 original size:33 final size:32
Alignment explanation
Indices: 1035876--1035939 Score: 76
Period size: 33 Copynumber: 2.0 Consensus size: 32
1035866 TAATTTATTT
*
1035876 TAATTTAAATT-ATTATTTAATTAATAAAAATAA
1 TAATTTAAATTAAATA-TTAATT-ATAAAAATAA
* *
1035909 TAATTTTATTTAAATATTAATTATAAAAATA
1 TAATTTAAATTAAATATTAATTATAAAAATA
1035940 TTTTATAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
32 9 0.33
33 15 0.56
34 3 0.11
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (32 bp):
TAATTTAAATTAAATATTAATTATAAAAATAA
Found at i:1036392 original size:2 final size:2
Alignment explanation
Indices: 1036387--1036424 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1036377 TCAACTGGAT
1036387 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1036425 GCTATGTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1037661 original size:2 final size:2
Alignment explanation
Indices: 1037654--1037686 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1037644 GTTCAAAGCC
1037654 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1037687 AGTGCAAGTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1037839 original size:23 final size:23
Alignment explanation
Indices: 1037813--1037866 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
1037803 TTAAATTATT
*
1037813 ATTTAATAAATAAAAATATTTAA
1 ATTTAATAAATAAAAATATATAA
* *
1037836 ATTTAAT-TATAAAATTATATAA
1 ATTTAATAAATAAAAATATATAA
1037858 ATATTAATA
1 AT-TTAATA
1037867 TAAATTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
22 14 0.54
23 12 0.46
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (23 bp):
ATTTAATAAATAAAAATATATAA
Found at i:1040596 original size:13 final size:13
Alignment explanation
Indices: 1040575--1040604 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
1040565 TTAAAATTTA
*
1040575 TTATTATTAATAT
1 TTATGATTAATAT
1040588 TTATGATTAATAT
1 TTATGATTAATAT
1040601 TTAT
1 TTAT
1040605 TATAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (13 bp):
TTATGATTAATAT
Found at i:1040597 original size:29 final size:31
Alignment explanation
Indices: 1040542--1040613 Score: 94
Period size: 29 Copynumber: 2.4 Consensus size: 31
1040532 TATAACGTGA
*
1040542 ATTATAATTATTATTTAGTGATTTTAAAATTT
1 ATTATAATTAATATTTAGTGA-TTTAAAATTT
* *
1040574 ATTATTATTAATATTTA-TGA-TTAATATTT
1 ATTATAATTAATATTTAGTGATTTAAAATTT
1040603 ATTATAATTAA
1 ATTATAATTAA
1040614 ATATAATTAT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 18 0.50
31 3 0.08
32 15 0.42
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (31 bp):
ATTATAATTAATATTTAGTGATTTAAAATTT
Found at i:1040607 original size:16 final size:16
Alignment explanation
Indices: 1040542--1040613 Score: 53
Period size: 16 Copynumber: 4.7 Consensus size: 16
1040532 TATAACGTGA
*
1040542 ATTATAATTATTATTT
1 ATTATAATTAATATTT
* * *
1040558 AGTGAT-TTTAAAATTT
1 A-TTATAATTAATATTT
*
1040574 ATTATTATTAATA--T
1 ATTATAATTAATATTT
*
1040588 -TTATGATTAATATTT
1 ATTATAATTAATATTT
1040603 ATTATAATTAA
1 ATTATAATTAA
1040614 ATATAATTAT
Statistics
Matches: 42, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
13 11 0.26
14 1 0.02
15 4 0.10
16 23 0.55
17 3 0.07
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (16 bp):
ATTATAATTAATATTT
Found at i:1041326 original size:18 final size:19
Alignment explanation
Indices: 1041304--1041355 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
1041294 ATATACATAA
1041304 AAAATATAATTATAATATT
1 AAAATATAATTATAATATT
* *
1041323 -AAATTTAATTGAT-TTATT
1 AAAATATAATT-ATAATATT
1041341 AAAATATCAATTATA
1 AAAATAT-AATTATA
1041356 CATGAAATTA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
18 13 0.50
19 9 0.35
20 4 0.15
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (19 bp):
AAAATATAATTATAATATT
Found at i:1041751 original size:15 final size:15
Alignment explanation
Indices: 1041733--1041787 Score: 56
Period size: 15 Copynumber: 3.5 Consensus size: 15
1041723 TATATTTGTG
* *
1041733 TTTTTTATATTATCT
1 TTTTTTATATCATAT
* *
1041748 TTTTTTGTATCATTT
1 TTTTTTATATCATAT
1041763 TATATTTTATATCATAT
1 T-T-TTTTATATCATAT
1041780 TTTTTTAT
1 TTTTTTAT
1041788 TTTATATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
15 19 0.58
16 2 0.06
17 12 0.36
ACGTcount: A:0.22, C:0.05, G:0.02, T:0.71
Consensus pattern (15 bp):
TTTTTTATATCATAT
Found at i:1042031 original size:2 final size:2
Alignment explanation
Indices: 1042026--1042105 Score: 51
Period size: 2 Copynumber: 39.5 Consensus size: 2
1042016 TGTGTGTGTG
* * *
1042026 TA TA TA TA TA TA TA TA TA TA GA TA TA T- TA -A T- TT TT TGA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
*
1042066 -A TGA TGA TA TA TGA TA TT TA TA TA TA TA TA TA TCA TA TA T
1 TA T-A T-A TA TA T-A TA TA TA TA TA TA TA TA TA T-A TA TA T
1042106 TATCATTATC
Statistics
Matches: 65, Mismatches: 5, Indels: 16
0.76 0.06 0.19
Matches are distributed among these distances:
1 4 0.06
2 51 0.78
3 10 0.15
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1042273 original size:2 final size:2
Alignment explanation
Indices: 1042266--1042298 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1042256 GATGTGATTG
1042266 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1042299 ACCAGTCAAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:1042983 original size:16 final size:16
Alignment explanation
Indices: 1042928--1042983 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 16
1042918 TATGTTTAAT
1042928 TTTTTAAAT-TTTATA
1 TTTTTAAATATTTATA
* * *
1042943 TATTCAAAAATTTAT-
1 TTTTTAAATATTTATA
*
1042958 TTTTT-TATATTTATA
1 TTTTTAAATATTTATA
1042973 TTTTTAAATAT
1 TTTTTAAATAT
1042984 GTGTTGAAAA
Statistics
Matches: 30, Mismatches: 8, Indels: 5
0.70 0.19 0.12
Matches are distributed among these distances:
14 7 0.23
15 14 0.47
16 9 0.30
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTTAAATATTTATA
Found at i:1043853 original size:5 final size:5
Alignment explanation
Indices: 1043843--1043875 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
1043833 AATAAATTAC
*
1043843 AAAAG AAAAG AAAAG AAAAG AGAA- AAAAG AAAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAA
1043876 ATATAAAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
4 3 0.12
5 22 0.88
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:1046748 original size:18 final size:17
Alignment explanation
Indices: 1046720--1046758 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 17
1046710 ATAATTTATT
1046720 AAATATAAATTTTATTGTA
1 AAATATAAATTTT-TT-TA
1046739 AAATAT-AATTTTTTTA
1 AAATATAAATTTTTTTA
1046755 AAAT
1 AAAT
1046759 GAAGTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
16 6 0.30
17 2 0.10
18 6 0.30
19 6 0.30
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (17 bp):
AAATATAAATTTTTTTA
Found at i:1047777 original size:22 final size:21
Alignment explanation
Indices: 1047748--1047797 Score: 73
Period size: 21 Copynumber: 2.3 Consensus size: 21
1047738 TCAATATAAT
1047748 ATTTTTACTTTATTTTTAAACA
1 ATTTTTAC-TTATTTTTAAACA
* *
1047770 TTTTTTACTTATTTTTAATCA
1 ATTTTTACTTATTTTTAAACA
1047791 ATTTTTA
1 ATTTTTA
1047798 ATTTTTCACT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (21 bp):
ATTTTTACTTATTTTTAAACA
Done.